Query 001247
Match_columns 1115
No_of_seqs 167 out of 297
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 19:46:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525 Sister chromatid cohes 100.0 1E-135 2E-140 1273.4 77.9 1049 12-1084 8-1104(1266)
2 KOG1525 Sister chromatid cohes 99.1 1.1E-09 2.3E-14 140.6 16.3 221 8-231 409-649 (1266)
3 PTZ00429 beta-adaptin; Provisi 98.7 0.00014 3.1E-09 91.4 40.3 391 269-755 39-437 (746)
4 KOG2171 Karyopherin (importin) 98.6 0.00061 1.3E-08 86.1 42.2 563 223-856 5-596 (1075)
5 PTZ00429 beta-adaptin; Provisi 98.2 0.007 1.5E-07 76.6 38.2 122 246-373 89-210 (746)
6 KOG1020 Sister chromatid cohes 98.1 0.01 2.3E-07 76.8 35.5 134 297-442 810-944 (1692)
7 KOG1824 TATA-binding protein-i 98.0 0.12 2.5E-06 64.7 46.1 365 21-413 24-468 (1233)
8 PF01602 Adaptin_N: Adaptin N 98.0 0.00089 1.9E-08 82.2 24.6 117 245-369 62-179 (526)
9 KOG1020 Sister chromatid cohes 97.7 0.084 1.8E-06 68.9 34.1 166 245-414 796-965 (1692)
10 PRK09687 putative lyase; Provi 97.6 0.00043 9.3E-09 78.1 12.6 59 343-406 160-218 (280)
11 PRK09687 putative lyase; Provi 97.6 0.00037 8.1E-09 78.6 12.1 145 246-407 41-186 (280)
12 PF01602 Adaptin_N: Adaptin N 97.3 0.26 5.7E-06 60.5 32.8 277 204-533 94-374 (526)
13 PRK13800 putative oxidoreducta 97.1 0.048 1E-06 71.6 24.2 119 264-405 777-895 (897)
14 KOG1060 Vesicle coat complex A 97.1 0.17 3.8E-06 62.2 26.1 373 270-715 43-421 (968)
15 PF13646 HEAT_2: HEAT repeats; 96.9 0.0054 1.2E-07 56.0 9.3 83 308-405 4-88 (88)
16 PF12717 Cnd1: non-SMC mitotic 96.9 0.022 4.7E-07 59.9 14.9 94 316-411 1-94 (178)
17 KOG1242 Protein containing ada 96.8 0.7 1.5E-05 56.1 27.7 231 302-582 215-449 (569)
18 PRK13800 putative oxidoreducta 96.7 0.0082 1.8E-07 78.6 12.2 120 263-407 622-741 (897)
19 KOG0212 Uncharacterized conser 96.7 1.8 4E-05 51.9 29.3 434 207-671 26-509 (675)
20 PF10508 Proteasom_PSMB: Prote 96.6 0.27 5.9E-06 60.3 23.3 242 164-410 90-367 (503)
21 KOG1062 Vesicle coat complex A 96.2 1.3 2.9E-05 55.0 25.6 355 258-712 103-467 (866)
22 PF12348 CLASP_N: CLASP N term 96.1 0.064 1.4E-06 58.4 12.9 147 263-412 54-209 (228)
23 PF13646 HEAT_2: HEAT repeats; 96.0 0.022 4.8E-07 51.9 7.4 86 264-367 1-88 (88)
24 PF14500 MMS19_N: Dos2-interac 95.8 0.97 2.1E-05 50.6 20.8 231 63-308 6-255 (262)
25 KOG2025 Chromosome condensatio 95.6 0.45 9.7E-06 58.2 17.7 158 217-404 59-217 (892)
26 KOG2023 Nuclear transport rece 95.5 3.4 7.4E-05 50.6 24.3 217 245-470 378-613 (885)
27 PLN03200 cellulose synthase-in 95.3 5.6 0.00012 55.7 28.6 374 315-752 416-812 (2102)
28 KOG1824 TATA-binding protein-i 95.2 14 0.0003 47.3 32.7 544 204-768 454-1053(1233)
29 KOG1061 Vesicle coat complex A 95.2 6 0.00013 49.5 25.6 373 262-676 13-417 (734)
30 COG5096 Vesicle coat complex, 95.1 5.2 0.00011 50.7 25.3 129 271-410 28-157 (757)
31 PF12755 Vac14_Fab1_bd: Vacuol 95.0 0.066 1.4E-06 50.6 6.7 67 340-407 25-94 (97)
32 KOG1060 Vesicle coat complex A 94.9 15 0.00033 46.1 31.1 162 245-415 91-252 (968)
33 KOG1949 Uncharacterized conser 94.7 2.4 5.3E-05 52.0 20.1 102 264-369 222-329 (1005)
34 PF10508 Proteasom_PSMB: Prote 94.7 15 0.00033 45.2 34.2 143 263-406 120-269 (503)
35 KOG0213 Splicing factor 3b, su 94.7 9 0.0002 47.6 24.6 298 63-409 560-954 (1172)
36 KOG2023 Nuclear transport rece 94.5 0.55 1.2E-05 57.0 14.2 182 167-382 105-293 (885)
37 PF12460 MMS19_C: RNAPII trans 94.5 13 0.00029 44.5 26.5 316 52-379 36-402 (415)
38 COG5218 YCG1 Chromosome conden 94.5 8.2 0.00018 46.8 23.3 251 268-558 97-371 (885)
39 PLN03200 cellulose synthase-in 94.4 20 0.00043 50.6 30.2 111 602-717 733-862 (2102)
40 PF12719 Cnd3: Nuclear condens 94.3 0.47 1E-05 54.2 13.0 98 270-371 35-143 (298)
41 PF12348 CLASP_N: CLASP N term 94.3 0.34 7.3E-06 52.7 11.3 103 264-371 96-206 (228)
42 cd00020 ARM Armadillo/beta-cat 94.3 0.067 1.4E-06 51.1 5.2 30 263-292 8-37 (120)
43 PF02985 HEAT: HEAT repeat; I 94.1 0.075 1.6E-06 39.0 3.8 29 343-371 1-29 (31)
44 PF12717 Cnd1: non-SMC mitotic 93.9 0.55 1.2E-05 49.4 11.6 83 248-333 11-93 (178)
45 PF13513 HEAT_EZ: HEAT-like re 93.2 0.055 1.2E-06 45.1 2.1 52 317-368 1-54 (55)
46 KOG1949 Uncharacterized conser 93.1 11 0.00024 46.6 21.3 211 265-486 177-400 (1005)
47 KOG0414 Chromosome condensatio 93.0 3.2 6.9E-05 53.9 17.6 153 243-401 895-1056(1251)
48 KOG2011 Sister chromatid cohes 92.3 0.27 5.9E-06 63.2 7.3 104 307-410 291-400 (1048)
49 PF13513 HEAT_EZ: HEAT-like re 92.1 0.12 2.7E-06 42.9 2.9 52 356-407 1-55 (55)
50 PF10363 DUF2435: Protein of u 91.9 1.3 2.8E-05 41.5 9.6 87 302-392 2-89 (92)
51 PF12719 Cnd3: Nuclear condens 91.9 8.3 0.00018 44.0 18.3 106 303-410 26-144 (298)
52 COG5240 SEC21 Vesicle coat com 91.5 36 0.00078 41.5 22.6 325 79-434 44-386 (898)
53 COG5098 Chromosome condensatio 91.5 0.94 2E-05 55.2 10.0 104 308-411 304-417 (1128)
54 KOG2011 Sister chromatid cohes 91.3 15 0.00033 48.1 20.9 256 142-411 138-438 (1048)
55 cd00020 ARM Armadillo/beta-cat 91.1 0.37 8E-06 45.9 5.4 96 312-407 16-118 (120)
56 KOG2259 Uncharacterized conser 91.1 0.44 9.5E-06 57.8 6.9 97 306-406 376-472 (823)
57 PF13001 Ecm29: Proteasome sta 90.9 9.3 0.0002 47.0 18.4 213 141-383 267-498 (501)
58 PF12755 Vac14_Fab1_bd: Vacuol 90.8 0.53 1.1E-05 44.5 5.9 84 279-362 3-88 (97)
59 KOG0915 Uncharacterized conser 90.8 30 0.00065 46.6 22.9 316 66-393 1047-1457(1702)
60 PF12765 Cohesin_HEAT: HEAT re 90.6 0.33 7.3E-06 38.4 3.6 39 327-365 3-41 (42)
61 KOG0414 Chromosome condensatio 89.7 83 0.0018 41.7 57.9 443 245-718 295-784 (1251)
62 KOG2259 Uncharacterized conser 89.5 2.5 5.4E-05 51.7 11.2 112 296-410 191-311 (823)
63 TIGR02270 conserved hypothetic 89.3 2.7 5.8E-05 50.2 11.5 54 346-406 151-204 (410)
64 KOG1062 Vesicle coat complex A 89.1 26 0.00056 44.3 19.6 165 167-371 220-414 (866)
65 TIGR02270 conserved hypothetic 89.1 2.1 4.5E-05 51.1 10.4 123 266-409 121-267 (410)
66 KOG1078 Vesicle coat complex C 88.7 11 0.00023 47.4 15.9 135 221-363 389-524 (865)
67 KOG1820 Microtubule-associated 88.5 5.5 0.00012 51.2 14.0 151 258-412 249-446 (815)
68 KOG2956 CLIP-associating prote 88.0 5.1 0.00011 47.4 12.2 154 273-435 341-498 (516)
69 COG5240 SEC21 Vesicle coat com 87.4 80 0.0017 38.7 23.7 51 624-674 319-369 (898)
70 KOG1058 Vesicle coat complex C 87.2 95 0.0021 39.3 24.6 144 256-411 14-165 (948)
71 KOG1248 Uncharacterized conser 87.0 1.2E+02 0.0026 40.3 25.3 298 24-369 585-896 (1176)
72 KOG1967 DNA repair/transcripti 86.7 3.4 7.4E-05 52.3 10.4 149 261-409 866-1024(1030)
73 COG5098 Chromosome condensatio 86.2 4.7 0.0001 49.5 10.8 135 244-378 281-423 (1128)
74 PF01347 Vitellogenin_N: Lipop 85.4 17 0.00036 45.9 16.2 127 256-403 480-616 (618)
75 COG5096 Vesicle coat complex, 84.9 3.5 7.6E-05 52.2 9.4 103 304-410 93-196 (757)
76 PF12231 Rif1_N: Rap1-interact 84.2 97 0.0021 36.6 27.4 321 66-411 3-354 (372)
77 COG1413 FOG: HEAT repeat [Ener 83.2 9.3 0.0002 44.1 11.7 127 257-409 104-242 (335)
78 COG1413 FOG: HEAT repeat [Ener 82.2 10 0.00022 43.8 11.4 124 263-410 75-210 (335)
79 PF14676 FANCI_S2: FANCI solen 82.2 3 6.6E-05 43.0 6.2 121 245-368 38-158 (158)
80 KOG1058 Vesicle coat complex C 81.8 81 0.0017 39.9 18.6 255 64-368 142-422 (948)
81 PF12765 Cohesin_HEAT: HEAT re 81.8 1.8 3.9E-05 34.3 3.5 39 366-404 3-42 (42)
82 KOG0392 SNF2 family DNA-depend 81.1 8.3 0.00018 50.6 10.6 138 241-383 792-945 (1549)
83 PF02985 HEAT: HEAT repeat; I 80.4 3 6.5E-05 30.5 4.0 29 382-410 2-30 (31)
84 KOG0368 Acetyl-CoA carboxylase 79.1 1.2E+02 0.0025 41.4 19.5 257 107-371 768-1083(2196)
85 smart00638 LPD_N Lipoprotein N 76.7 1.1E+02 0.0025 38.1 19.1 144 254-407 389-543 (574)
86 PF05804 KAP: Kinesin-associat 76.5 1.1E+02 0.0024 39.3 18.5 177 644-831 289-478 (708)
87 KOG1967 DNA repair/transcripti 75.7 1.1E+02 0.0024 39.7 17.6 140 225-365 862-1018(1030)
88 KOG2213 Apoptosis inhibitor 5/ 75.5 1.3E+02 0.0029 35.3 17.0 230 300-566 22-275 (460)
89 COG5537 IRR1 Cohesin [Cell div 72.5 5.5 0.00012 48.4 5.4 104 302-409 273-386 (740)
90 PF12074 DUF3554: Domain of un 72.1 2E+02 0.0043 33.4 18.4 204 147-355 19-257 (339)
91 PF10363 DUF2435: Protein of u 70.5 15 0.00032 34.5 6.8 85 267-357 8-92 (92)
92 PF08167 RIX1: rRNA processing 70.5 32 0.00069 35.7 10.1 137 602-770 19-162 (165)
93 KOG0166 Karyopherin (importin) 70.1 11 0.00024 45.7 7.4 141 262-406 152-305 (514)
94 KOG1059 Vesicle coat complex A 70.1 54 0.0012 41.2 12.9 165 244-409 163-365 (877)
95 PF13251 DUF4042: Domain of un 68.6 56 0.0012 34.6 11.4 131 277-410 1-175 (182)
96 PF01347 Vitellogenin_N: Lipop 68.2 63 0.0014 40.8 14.1 139 256-406 429-586 (618)
97 KOG1248 Uncharacterized conser 68.0 4.2E+02 0.0091 35.6 50.1 145 121-266 282-433 (1176)
98 KOG1059 Vesicle coat complex A 67.9 15 0.00033 45.7 7.8 112 256-375 103-214 (877)
99 PF14911 MMS22L_C: S-phase gen 67.0 60 0.0013 38.2 12.3 184 97-287 140-370 (373)
100 KOG1078 Vesicle coat complex C 66.8 3.7E+02 0.0081 34.5 21.1 238 630-891 267-522 (865)
101 COG5181 HSH155 U2 snRNP splice 66.5 3.4E+02 0.0073 33.9 18.4 259 146-410 395-718 (975)
102 KOG1992 Nuclear export recepto 66.4 2.3E+02 0.0049 36.5 17.3 116 113-233 603-733 (960)
103 PF05004 IFRD: Interferon-rela 66.1 1.5E+02 0.0033 34.1 15.3 67 648-714 46-114 (309)
104 KOG0211 Protein phosphatase 2A 65.6 20 0.00044 45.9 8.7 135 274-411 210-347 (759)
105 KOG0413 Uncharacterized conser 65.6 20 0.00043 46.0 8.2 136 270-410 939-1074(1529)
106 PF11864 DUF3384: Domain of un 64.8 3.3E+02 0.0072 33.2 22.0 166 116-291 147-330 (464)
107 PF14500 MMS19_N: Dos2-interac 64.3 2.5E+02 0.0054 31.6 22.9 64 345-410 2-70 (262)
108 KOG1240 Protein kinase contain 64.1 55 0.0012 43.3 11.9 156 241-397 439-634 (1431)
109 KOG1243 Protein kinase [Genera 63.9 26 0.00057 43.7 8.9 102 308-409 335-437 (690)
110 KOG0413 Uncharacterized conser 63.8 1.8E+02 0.004 37.9 15.9 69 342-410 576-646 (1529)
111 KOG4413 26S proteasome regulat 63.4 2.8E+02 0.0061 32.0 18.5 165 243-411 189-379 (524)
112 KOG2171 Karyopherin (importin) 62.0 5.2E+02 0.011 34.6 68.4 314 62-412 86-421 (1075)
113 COG5537 IRR1 Cohesin [Cell div 62.0 49 0.0011 40.7 10.4 130 272-412 285-428 (740)
114 PF12830 Nipped-B_C: Sister ch 61.6 33 0.00072 36.4 8.3 70 341-411 7-76 (187)
115 PF03378 CAS_CSE1: CAS/CSE pro 59.6 1.3E+02 0.0028 36.5 13.7 191 75-294 45-256 (435)
116 COG5181 HSH155 U2 snRNP splice 58.7 4.6E+02 0.0099 32.9 19.4 303 53-367 599-943 (975)
117 PF05918 API5: Apoptosis inhib 56.6 1.4E+02 0.003 37.2 13.3 83 274-363 34-116 (556)
118 KOG2933 Uncharacterized conser 56.3 75 0.0016 36.3 10.0 162 244-410 107-281 (334)
119 PF13251 DUF4042: Domain of un 56.2 79 0.0017 33.5 9.8 98 271-371 49-174 (182)
120 KOG0211 Protein phosphatase 2A 55.7 3E+02 0.0066 35.7 16.5 139 261-401 275-419 (759)
121 PF04826 Arm_2: Armadillo-like 55.2 1.6E+02 0.0035 32.9 12.7 107 646-753 13-123 (254)
122 smart00638 LPD_N Lipoprotein N 54.8 2.6E+02 0.0057 34.9 16.1 95 256-362 475-569 (574)
123 KOG2032 Uncharacterized conser 53.5 3.6E+02 0.0079 32.8 15.4 115 339-458 255-373 (533)
124 KOG1991 Nuclear transport rece 53.1 6.4E+02 0.014 33.4 18.4 241 144-387 317-592 (1010)
125 KOG0166 Karyopherin (importin) 51.3 1.3E+02 0.0029 36.8 11.8 169 265-440 69-250 (514)
126 KOG1077 Vesicle coat complex A 50.2 73 0.0016 40.0 9.3 100 256-361 323-423 (938)
127 PF05004 IFRD: Interferon-rela 50.1 2.3E+02 0.0051 32.6 13.3 150 263-412 87-260 (309)
128 COG5218 YCG1 Chromosome conden 50.0 6.1E+02 0.013 31.7 24.1 261 23-372 3-267 (885)
129 PF05327 RRN3: RNA polymerase 49.4 1.8E+02 0.0039 36.4 13.2 188 102-325 31-223 (563)
130 KOG2956 CLIP-associating prote 49.3 4.2E+02 0.009 32.2 15.0 166 163-331 300-476 (516)
131 KOG0915 Uncharacterized conser 48.7 9.5E+02 0.021 33.5 40.1 313 74-412 788-1163(1702)
132 KOG1242 Protein containing ada 47.2 6.7E+02 0.014 31.4 33.4 187 248-442 41-231 (569)
133 KOG2025 Chromosome condensatio 46.6 7.4E+02 0.016 31.7 29.4 214 141-409 75-294 (892)
134 cd00256 VATPase_H VATPase_H, r 45.7 6.3E+02 0.014 30.6 20.7 63 67-133 65-131 (429)
135 PF12074 DUF3554: Domain of un 45.6 1.2E+02 0.0027 35.1 10.4 87 319-409 3-90 (339)
136 PF05804 KAP: Kinesin-associat 45.0 8.1E+02 0.018 31.7 22.3 166 542-714 461-648 (708)
137 COG5116 RPN2 26S proteasome re 44.5 40 0.00087 41.0 5.9 96 313-411 526-652 (926)
138 PF04118 Dopey_N: Dopey, N-ter 44.5 1.9E+02 0.0042 33.3 11.3 107 251-368 131-251 (307)
139 PF14228 MOR2-PAG1_mid: Cell m 43.9 1E+03 0.022 32.5 24.9 126 278-411 486-612 (1120)
140 KOG2051 Nonsense-mediated mRNA 43.6 1.6E+02 0.0034 38.9 11.1 92 245-337 481-579 (1128)
141 KOG2160 Armadillo/beta-catenin 43.5 3.1E+02 0.0067 32.0 12.6 98 270-372 132-241 (342)
142 PF04826 Arm_2: Armadillo-like 43.0 1E+02 0.0022 34.4 8.7 135 273-407 24-161 (254)
143 PF12530 DUF3730: Protein of u 42.5 5E+02 0.011 28.5 16.3 129 625-756 55-190 (234)
144 KOG2213 Apoptosis inhibitor 5/ 41.9 6.7E+02 0.014 29.8 23.7 90 274-368 36-134 (460)
145 cd03568 VHS_STAM VHS domain fa 41.9 70 0.0015 32.5 6.6 71 603-677 36-113 (144)
146 PF14664 RICTOR_N: Rapamycin-i 41.7 59 0.0013 38.4 6.9 112 263-376 26-142 (371)
147 PF05918 API5: Apoptosis inhib 41.6 8.1E+02 0.018 30.7 25.1 108 299-410 19-126 (556)
148 KOG2062 26S proteasome regulat 40.5 1.4E+02 0.0031 37.8 9.8 141 278-435 502-673 (929)
149 KOG4413 26S proteasome regulat 39.7 2.2E+02 0.0048 32.8 10.3 129 275-410 53-201 (524)
150 cd03561 VHS VHS domain family; 39.4 2.6E+02 0.0057 27.8 10.2 81 329-411 26-114 (133)
151 PF11919 DUF3437: Domain of un 39.0 77 0.0017 29.6 5.8 57 355-412 2-61 (90)
152 PF08767 CRM1_C: CRM1 C termin 37.5 2.5E+02 0.0054 32.5 11.1 126 167-292 43-195 (319)
153 PF00514 Arm: Armadillo/beta-c 36.0 59 0.0013 25.1 3.9 29 342-370 12-40 (41)
154 COG5064 SRP1 Karyopherin (impo 34.8 3.5E+02 0.0075 31.4 11.0 137 264-407 73-251 (526)
155 PF12830 Nipped-B_C: Sister ch 34.1 2.5E+02 0.0055 29.7 9.7 63 304-371 9-74 (187)
156 PF11707 Npa1: Ribosome 60S bi 33.0 2.1E+02 0.0045 33.3 9.5 128 258-409 52-214 (330)
157 PF08506 Cse1: Cse1; InterPro 32.7 7.9E+02 0.017 29.1 14.3 223 509-747 102-369 (370)
158 KOG0567 HEAT repeat-containing 32.3 7.9E+02 0.017 27.8 14.4 61 345-412 190-252 (289)
159 PF06972 DUF1296: Protein of u 31.9 76 0.0017 27.2 4.0 35 322-360 7-41 (60)
160 KOG0162 Myosin class I heavy c 31.7 4.3E+02 0.0094 33.6 11.8 222 163-413 455-711 (1106)
161 KOG2153 Protein involved in th 31.0 1.3E+02 0.0029 37.5 7.5 62 321-382 303-365 (704)
162 PF14911 MMS22L_C: S-phase gen 30.7 5.1E+02 0.011 30.7 12.0 123 18-160 223-347 (373)
163 KOG0168 Putative ubiquitin fus 30.3 8.9E+02 0.019 31.7 14.4 243 50-311 328-641 (1051)
164 PF11865 DUF3385: Domain of un 30.1 4.8E+02 0.01 26.9 10.7 143 252-409 4-157 (160)
165 KOG1820 Microtubule-associated 30.0 1.3E+03 0.029 30.3 16.5 104 306-409 256-365 (815)
166 PF11698 V-ATPase_H_C: V-ATPas 29.7 2.1E+02 0.0046 28.2 7.4 67 342-410 43-116 (119)
167 KOG1517 Guanine nucleotide bin 29.3 3.7E+02 0.0079 35.8 11.0 136 256-411 597-734 (1387)
168 PF00514 Arm: Armadillo/beta-c 28.8 61 0.0013 25.0 2.9 30 261-290 11-40 (41)
169 KOG2062 26S proteasome regulat 28.8 1.1E+02 0.0024 38.7 6.3 101 299-408 480-583 (929)
170 KOG1061 Vesicle coat complex A 28.7 1.4E+03 0.03 29.6 27.4 124 246-375 70-193 (734)
171 PF04867 DUF643: Protein of un 28.3 5.3E+02 0.011 24.6 9.2 102 468-583 4-110 (114)
172 KOG2160 Armadillo/beta-catenin 28.0 5.1E+02 0.011 30.3 11.2 145 264-411 85-242 (342)
173 cd03567 VHS_GGA VHS domain fam 27.0 1.8E+02 0.004 29.4 6.7 52 626-677 56-119 (139)
174 KOG3723 PH domain protein Melt 26.6 1.3E+03 0.029 28.7 14.5 191 139-336 20-285 (851)
175 KOG1293 Proteins containing ar 26.1 3.6E+02 0.0078 33.9 10.0 173 267-449 336-524 (678)
176 cd03569 VHS_Hrs_Vps27p VHS dom 26.0 1.9E+02 0.0041 29.3 6.7 72 602-677 39-117 (142)
177 PF00790 VHS: VHS domain; Int 25.5 6.7E+02 0.014 25.1 10.6 68 629-699 27-98 (140)
178 PF07637 PSD5: Protein of unkn 25.3 2.3E+02 0.0051 24.5 6.2 59 4-67 2-61 (64)
179 PF00790 VHS: VHS domain; Int 25.0 1.9E+02 0.0041 29.1 6.5 81 329-412 31-120 (140)
180 KOG0212 Uncharacterized conser 24.5 1.5E+03 0.032 28.5 36.2 283 118-411 12-326 (675)
181 cd06561 AlkD_like A new struct 24.5 3E+02 0.0066 28.8 8.4 75 318-400 121-195 (197)
182 KOG2050 Puf family RNA-binding 24.2 1.5E+03 0.032 28.5 14.3 238 279-550 111-376 (652)
183 KOG1243 Protein kinase [Genera 23.9 1.3E+02 0.0028 37.9 5.8 114 256-371 324-437 (690)
184 KOG2038 CAATT-binding transcri 23.5 1.7E+03 0.037 28.9 18.9 50 313-364 314-363 (988)
185 PF08569 Mo25: Mo25-like; Int 23.4 1.2E+03 0.027 27.2 15.1 167 229-410 49-239 (335)
186 cd03568 VHS_STAM VHS domain fa 23.3 4E+02 0.0088 27.1 8.5 72 339-410 34-111 (144)
187 COG5079 SAC3 Nuclear protein e 22.9 58 0.0013 39.3 2.6 107 967-1111 195-309 (646)
188 cd00280 TRFH Telomeric Repeat 22.8 4.3E+02 0.0094 28.2 8.5 103 47-157 30-139 (200)
189 PF12530 DUF3730: Protein of u 22.5 1E+03 0.023 26.0 16.6 75 248-326 107-183 (234)
190 PF10274 ParcG: Parkin co-regu 22.3 1.9E+02 0.0041 30.8 5.9 81 253-333 27-110 (183)
191 cd03565 VHS_Tom1 VHS domain fa 22.1 2.5E+02 0.0054 28.4 6.6 72 603-677 37-118 (141)
192 COG5219 Uncharacterized conser 21.9 1.2E+03 0.027 30.8 13.4 194 98-328 1036-1263(1525)
193 smart00288 VHS Domain present 21.4 4.3E+02 0.0093 26.3 8.2 73 339-411 34-113 (133)
194 cd03572 ENTH_epsin_related ENT 21.4 1.3E+02 0.0028 29.8 4.3 84 302-410 37-120 (122)
195 KOG0946 ER-Golgi vesicle-tethe 21.3 5.1E+02 0.011 33.4 10.1 129 242-410 106-242 (970)
196 cd00197 VHS_ENTH_ANTH VHS, ENT 21.1 5.9E+02 0.013 24.3 8.9 67 339-405 34-111 (115)
197 PF08569 Mo25: Mo25-like; Int 21.0 1.4E+03 0.029 26.8 19.5 88 266-354 213-313 (335)
No 1
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1e-135 Score=1273.43 Aligned_cols=1049 Identities=31% Similarity=0.472 Sum_probs=884.7
Q ss_pred HccccCCCCCChHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCC
Q 001247 12 VGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEA 91 (1115)
Q Consensus 12 ~g~~l~~~~~~~~~Ll~rL~~l~~~L~~~~Q~~~~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APda 91 (1115)
-|-+....|.+++||++||++|+++|++++|++ .+.+++.|++.+|+++.||+|+|+|||++||||+|||||||||||
T Consensus 8 ~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPea 85 (1266)
T KOG1525|consen 8 PGCLTSLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEA 85 (1266)
T ss_pred CCCccccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCC
Confidence 355566678999999999999999999999996 689999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhcCCChhcHHHHH
Q 001247 92 PYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSM 171 (1115)
Q Consensus 92 Py~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~~~~li~~lF~~~~~~v~~~~~~~v~~~m 171 (1115)
||+++||+|||++|++||.||+|+.||||.||+||||+|+.||.|++|.|.+|++++.++|++||++++.+|+++|.+ |
T Consensus 86 Py~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~-~ 164 (1266)
T KOG1525|consen 86 PYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN-M 164 (1266)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH-H
Confidence 999999999999999999999999999999999999999999955455555599999999999999999999999999 9
Q ss_pred HHHHHHHhcccccccHHHHHHHHHhhcCCCc---hHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCC-CCCCCcchHHH
Q 001247 172 QTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDYHE 247 (1115)
Q Consensus 172 ~~Il~~vI~e~~~i~~~~ld~il~~~~~~~~---~~a~~la~~v~~~~~~~l~~~i~~~~~~~l~~~~-~~~~~~~~~h~ 247 (1115)
.+||+.+|.|.+.||.++|++||.+|..++. ..|+++|.++++.|++.+++.+++||++.+.++. ..+....++|+
T Consensus 165 ~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he 244 (1266)
T KOG1525|consen 165 LDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHE 244 (1266)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHH
Confidence 9999999999999999999999999976543 3999999999999999999999999999887754 34556678999
Q ss_pred HHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHh
Q 001247 248 VIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHV 327 (1115)
Q Consensus 248 li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~ 327 (1115)
+|++||+++|++|++|||||++||.+|++.+|+.||.++|+||+.+++.++.+|+++|.+|||||+|++++||++||+++
T Consensus 245 ~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~ 324 (1266)
T KOG1525|consen 245 LILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESI 324 (1266)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 328 KSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 328 ~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
++||.+||+...+..+..+++.|..|+|++||..+|.++|+++.+.+..++. +++.++||+||||+.||++||++|+++
T Consensus 325 ~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~Laql 403 (1266)
T KOG1525|consen 325 KQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQL 403 (1266)
T ss_pred HHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999998777788889999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHH-hhhhccCCCcchhhcccchHHHhhhhhccCCCch-hHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001247 408 FRG-CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEK 485 (1115)
Q Consensus 408 y~~-~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~-~ve~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~ka~~~ 485 (1115)
|+. |+...+.|...+..|.|||++||++||.|+.+.+ +||++++++|+|+++++++|+++|+++|++||..+.++|..
T Consensus 404 Yk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~ 483 (1266)
T KOG1525|consen 404 YKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNE 483 (1266)
T ss_pred HHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHH
Confidence 997 4555566778889999999999999999987654 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhh--hhHHHHHHHHHHhccCC
Q 001247 486 ILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDSNT 563 (1115)
Q Consensus 486 il~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l--~D~r~~~llk~~~~~~s 563 (1115)
|+++|.++|.+++.|+.+++..+.++ ..+++...|..++..||||.+.....++|++. .+..+..++..+.++..
T Consensus 484 i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~ 560 (1266)
T KOG1525|consen 484 ILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSI 560 (1266)
T ss_pred HHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999987765443 66677777889999999999999999999763 66788889999999988
Q ss_pred CHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhccccch-hHHHHHHHHHHhhc-------ccch--hhhhHHHH
Q 001247 564 SFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQK-------SSAN--AQFMQSCM 629 (1115)
Q Consensus 564 ~~~~~~~a~~ellkkl~~----~~~~~~~~~~Ll~R~s~~i~n~-s~V~~Ll~~~~~~~-------~~~~--~~~~~~a~ 629 (1115)
+|++..-.+++.+.+++. +..+..+.+.+..|..++.++. +.+..+++....+. ..++ ......+.
T Consensus 561 ~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~ 640 (1266)
T KOG1525|consen 561 SCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKK 640 (1266)
T ss_pred hHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHH
Confidence 888776556666666554 4457788899999999988887 77777776443211 1111 12334567
Q ss_pred HHHHHHHhhCCcCccccH--HHHHHHHhhccccchHhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHH
Q 001247 630 DILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAV 707 (1115)
Q Consensus 630 ~LL~~iS~~~P~lf~~~~--~~L~~~l~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la~~Gtp~~AK~Av 707 (1115)
.++.++|..+|.+|.... ..++..+....+...+.+|+.+.+.|+......+...+.+.+.+.+++..|+|.+||+|+
T Consensus 641 ~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~ 720 (1266)
T KOG1525|consen 641 YLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAK 720 (1266)
T ss_pred HHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHHHh
Confidence 899999999999988873 666666666555677889999988884444444455667889999999999999999999
Q ss_pred HHHHhhcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhcccccccc-hHHHHHHHHHhhhcccccccC
Q 001247 708 HALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKIRN 781 (1115)
Q Consensus 708 ~~L~~~~~~~~~~~~~~l~~~l~~~l~~~-----~~~~~~L~sLa~ia~~~p~~f~~~-~~~I~~fiik~iL~~~~~~~~ 781 (1115)
+|+.++...+.. .+.+.++.+.+.+..+ .++.+.+.+||+|+.+.|..|.++ ..++..||+|+++..++.+++
T Consensus 721 ~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~~e 799 (1266)
T KOG1525|consen 721 RCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSPGE 799 (1266)
T ss_pred hhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCcccc
Confidence 999988776422 3345566677766433 499999999999999999666554 778999999999888888776
Q ss_pred C-CCCCCCCC----hhhHHHHHHHHHHHHHhhcCCCccc--cccchHHHHHHHHHhh-ccCccccCCCCChhHHhhhhHH
Q 001247 782 D-TKACWDDR----SELCLLKIYGIKTLVKSYLPVKDAH--IRPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRLA 853 (1115)
Q Consensus 782 ~-~~~~W~~~----~~~~~~K~~aLK~lvn~l~~~~~~~--~~~~~~~l~~lL~~i~-~~Gel~~~~~t~~~~~srLRL~ 853 (1115)
. ....|++. +..+.+|..+++++++||++...+. .+......+.+|..++ +.|+...+..+|..+++++|+.
T Consensus 800 ~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr~~ 879 (1266)
T KOG1525|consen 800 KNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLRLT 879 (1266)
T ss_pred ccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhhhh
Confidence 5 66788763 4467889999999999999986642 1111122566777765 7999999999999999999999
Q ss_pred HHHHHHHhhhh--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHHHHh
Q 001247 854 SAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQN 931 (1115)
Q Consensus 854 Aa~~lLKLa~~--~~~~i~~~~~~l~~~~~qD~~~~VR~~Fl~KL~k~L~~~~l~~ry~~lf~la~~~~~~~~~~~~k~~ 931 (1115)
|+.+++|+|.. +..+++++++..+.+.++|++++||..|+.|+++++.+..+|.-|++.|.++..+..... ...+..
T Consensus 880 a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d~~~~~-~~~~~~ 958 (1266)
T KOG1525|consen 880 AKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPDVSKEL-LANKRE 958 (1266)
T ss_pred hhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccchhhhh-hhHHHH
Confidence 99999999976 578899999998888899999999999999999999999999999999988542211100 011111
Q ss_pred HHHHHHHHHHHHHhhhhhccccccccCcchhhHHHHHHHhcCCCCCCccchhcHHHHHHHHHHHHHHHHHhhcccccccc
Q 001247 932 LADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKS 1011 (1115)
Q Consensus 932 l~~~i~~~~~~~~r~~~~~~~~~~~~~~pE~~l~~LIhlLAHH~~pd~~~~~~~~~~~~~~~~l~F~l~~l~~~~e~~~~ 1011 (1115)
..+-...+++.+.....+.++. .....|||+.+|.+|++||| |++...+++..|-.+..++||.++.+..
T Consensus 959 ~~t~~~~~~r~~t~~e~~~s~~-~~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~------- 1028 (1266)
T KOG1525|consen 959 EETKNSASRREQTKFERATSDG-TLAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDE------- 1028 (1266)
T ss_pred hhhhcchhhhhhhhhhhccCch-hhhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhh-------
Confidence 1122222223233333333321 15688999999999999999 9999888999999999999999999864
Q ss_pred cccccccHHHHHH----HHHHhhcccccccc---ccccchHHHHHhHHHHHHHHhc-cCCCCCccccccCCCcccccCCC
Q 001247 1012 EASNKESISVIIS----IFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYKPYE 1083 (1115)
Q Consensus 1012 ~~a~~eN~sll~~----la~riKq~~Da~~~---~~s~~ly~l~DLaq~ii~~~~~-k~w~l~~yPgkv~LP~~lf~p~~ 1083 (1115)
+|..+-.+ +.+-+++.+|...+ ..+..||+|||+|+.++..... .+|+.++|||+.+||..+|++..
T Consensus 1029 -----~~~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~~~~ 1103 (1266)
T KOG1525|consen 1029 -----ENENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFTSPK 1103 (1266)
T ss_pred -----hhccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhCCcc
Confidence 33333333 44445667777644 3356799999999999998775 67999999999999999999977
Q ss_pred C
Q 001247 1084 K 1084 (1115)
Q Consensus 1084 s 1084 (1115)
+
T Consensus 1104 ~ 1104 (1266)
T KOG1525|consen 1104 D 1104 (1266)
T ss_pred h
Confidence 4
No 2
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.1e-09 Score=140.64 Aligned_cols=221 Identities=29% Similarity=0.365 Sum_probs=194.5
Q ss_pred HHHHHccccCCCCCC--hHHHHHHHHHH--------HHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHH
Q 001247 8 QLKEVGSKLETPPST--KDGLVKLLKQA--------ATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVA 77 (1115)
Q Consensus 8 ~~~~~g~~l~~~~~~--~~~Ll~rL~~l--------~~~L~~~~Q~~~~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~a 77 (1115)
.+...|.|...++.+ +++|+..+-+. +..|.++.|+..-.+.+.+++++.-|+.=....|++-++.+-..
T Consensus 409 ~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q 488 (1266)
T KOG1525|consen 409 CLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQ 488 (1266)
T ss_pred HhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHH
Confidence 455788999999988 99999988777 67788888877667889999999999999999999999999999
Q ss_pred HHHHHHHh--hcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCChhhH--HHHHHHHHhhhhhhhhccC---CchHHHHH
Q 001247 78 TCICEITR--ITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRR--VVILETLAKYRSCVVMLDL---ECDELVNE 150 (1115)
Q Consensus 78 cCl~dilR--i~APdaPy~~~~lkdif~l~~~~~~~L~d~~~~~~~~~--~~lLe~la~vks~vl~~dl---~~~~li~~ 150 (1115)
.||.+++| |.+|..||+++.++.||..|+..+..|.|+.+..|... ..+|+.++++++|+.+++. .|.++...
T Consensus 489 ~~ls~~vr~~I~~~k~~~~d~~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~~C~~l~~~ 568 (1266)
T KOG1525|consen 489 SRLSEEVRDYITLSKTPNTDDSMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSISCKELLIT 568 (1266)
T ss_pred HHHHHHHHHHhccccCCCccHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 99999999 99999999999999999999999999999977544443 3599999999999999994 58899889
Q ss_pred HHHHHHHhhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCc---hHHHHHHHHHHHHhhhhhhHHHHHH
Q 001247 151 MYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQF 227 (1115)
Q Consensus 151 lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~i~~~~ld~il~~~~~~~~---~~a~~la~~v~~~~~~~l~~~i~~~ 227 (1115)
||..|+.+++..++++++..|..+|++.|.+ |+-+++..+...+..+.. ..+..+...+|..|+-++..++.+-
T Consensus 569 v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~---v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ 645 (1266)
T KOG1525|consen 569 VKEILFELGRKKQSKNLFSSMEKELIERIAE---VSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEA 645 (1266)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhcc---hhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHH
Confidence 9999999999999999999999999999999 888888888877755433 2678899999999999999988777
Q ss_pred HHHh
Q 001247 228 LVSS 231 (1115)
Q Consensus 228 ~~~~ 231 (1115)
+..+
T Consensus 646 ls~~ 649 (1266)
T KOG1525|consen 646 LSSI 649 (1266)
T ss_pred hhhc
Confidence 6653
No 3
>PTZ00429 beta-adaptin; Provisional
Probab=98.67 E-value=0.00014 Score=91.40 Aligned_cols=391 Identities=12% Similarity=0.055 Sum_probs=213.0
Q ss_pred ccccCCchHHHHHHHH-HHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 001247 269 GELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1115)
Q Consensus 269 ~eL~se~~~~R~~At~-~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l 347 (1115)
.+|.+.+...|+.|.+ +++-|.-+. +...-+++.-+.+ .-.+.++|.-+--+.......+|+ .+--.++.|
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~G~--DvS~LF~dVvk~~----~S~d~elKKLvYLYL~~ya~~~pe--lalLaINtl 110 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTMGR--DVSYLFVDVVKLA----PSTDLELKKLVYLYVLSTARLQPE--KALLAVNTF 110 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCC--CchHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcccChH--HHHHHHHHH
Confidence 4445666676666665 667665543 5555666666644 333677887776666665554553 234568999
Q ss_pred HHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhccc
Q 001247 348 CDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEW 427 (1115)
Q Consensus 348 ~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~w 427 (1115)
.+=+.|+++.||.-|+++++.+-... +-+.++..+..-+.|+++-||+.|.-+++++|+..-. ....-+|
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe-------lv~~~~~ 180 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRVSS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ-------LFYQQDF 180 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-------cccccch
Confidence 99999999999999999888544322 2234556777788999999999999999999997421 1123356
Q ss_pred chHHHhhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001247 428 IPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMH 507 (1115)
Q Consensus 428 IP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~~~~~~~~~l~~~~~~ 507 (1115)
+|. +..+..+.|. ..+-.. ...+..+.. -++.. +. + ....+++++....+.
T Consensus 181 ~~~-L~~LL~D~dp--~Vv~nA---------------l~aL~eI~~-~~~~~---l~-l------~~~~~~~Ll~~L~e~ 231 (746)
T PTZ00429 181 KKD-LVELLNDNNP--VVASNA---------------AAIVCEVND-YGSEK---IE-S------SNEWVNRLVYHLPEC 231 (746)
T ss_pred HHH-HHHHhcCCCc--cHHHHH---------------HHHHHHHHH-hCchh---hH-H------HHHHHHHHHHHhhcC
Confidence 653 3343322221 111111 111111111 11110 10 0 111122222221111
Q ss_pred cCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCc--h
Q 001247 508 QDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR--L 585 (1115)
Q Consensus 508 ~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r~~~llk~~~~~~s~~~~~~~a~~ellkkl~~~~~--~ 585 (1115)
+ +-.+-. +++.|+..-|+. -.+.......+..++...++ +
T Consensus 232 ---~-EW~Qi~---IL~lL~~y~P~~-------------------------------~~e~~~il~~l~~~Lq~~N~AVV 273 (746)
T PTZ00429 232 ---N-EWGQLY---ILELLAAQRPSD-------------------------------KESAETLLTRVLPRMSHQNPAVV 273 (746)
T ss_pred ---C-hHHHHH---HHHHHHhcCCCC-------------------------------cHHHHHHHHHHHHHhcCCCHHHH
Confidence 1 112222 233333322321 11122334444555554433 5
Q ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHhh----cccchhhhhHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccc
Q 001247 586 YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQ----KSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEII 661 (1115)
Q Consensus 586 ~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~----~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~~~l~~~~~~~ 661 (1115)
++.++.++.-..+. +.+.+...++++... ..+.+ ...-.+.+-+..|...+|.+|..|.+.+--...+.+ .+
T Consensus 274 l~Aik~il~l~~~~--~~~~~~~~~~rl~~pLv~L~ss~~-eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~-yI 349 (746)
T PTZ00429 274 MGAIKVVANLASRC--SQELIERCTVRVNTALLTLSRRDA-ETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPP-FV 349 (746)
T ss_pred HHHHHHHHHhcCcC--CHHHHHHHHHHHHHHHHHhhCCCc-cHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcH-HH
Confidence 66677666544322 455555554433221 01111 123467777889999999999987655433333332 36
Q ss_pred hHhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcC-CCc
Q 001247 662 KEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-HLP 740 (1115)
Q Consensus 662 ~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la~~Gtp~~AK~Av~~L~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~ 740 (1115)
....|.+|+..+.. ++. ..+..-|..|+.+.++.-++.||++|+.+.-.- ....+..++.|.+-+..+. ...
T Consensus 350 K~~KLeIL~~Lane--~Nv----~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~~cV~~Ll~ll~~~~~~v~ 422 (746)
T PTZ00429 350 KLEKLRLLLKLVTP--SVA----PEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVAPDCANLLLQIVDRRPELLP 422 (746)
T ss_pred HHHHHHHHHHHcCc--ccH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCchhHH
Confidence 67789999887643 222 235667888999888999999999998765421 1223344555555554322 222
Q ss_pred hHHHHHHHHHhhccc
Q 001247 741 AVLQSLGCIAQTAMP 755 (1115)
Q Consensus 741 ~~L~sLa~ia~~~p~ 755 (1115)
..+.++-.|.+..|.
T Consensus 423 e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 423 QVVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHHCcc
Confidence 345556666666664
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00061 Score=86.11 Aligned_cols=563 Identities=14% Similarity=0.152 Sum_probs=311.5
Q ss_pred HHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhcccc-CCchHHHHHHHHHHHHhhcCCCCChhhhc
Q 001247 223 GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELL-TDQLDTRLKAVGLVGDLFAVPGSANNEQF 301 (1115)
Q Consensus 223 ~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~-se~~~~R~~At~~lg~m~s~~~~~~~~~~ 301 (1115)
.+.|.+...+.-|+. ....+-+.+..+|+-.| ++|.|.+-+. +.|+++|..|.-++-|+++..-..+..+-
T Consensus 5 ~l~qLl~~l~spDn~---vr~~Ae~~l~~~~~~~~-----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNE---VRRQAEEALETLAKTEP-----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred HHHHHHHHhcCCCch---HHHHHHHHHHHhhcccc-----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 344455544433321 22346677777888888 7778888887 77999999999999998876433332222
Q ss_pred -----HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC
Q 001247 302 -----HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1115)
Q Consensus 302 -----~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~ 376 (1115)
.++-..+. ....+.||.+..+.+..|-.+-... .-+++++.|..+.+++|+.-|-.|+-.+..+...-...
T Consensus 77 ~~siks~lL~~~~---~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQ---SETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHHHHH---hccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc
Confidence 22333333 4567899999999988876654322 35799999999999999999999999988776543333
Q ss_pred CCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhc-ccchHHHhhhhhccCCCchhHHHHhhh
Q 001247 377 IPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEF-EWIPGKILRCLYDKDFGSDTIESVLCG 452 (1115)
Q Consensus 377 v~~---~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~-~wIP~~il~~~y~~d~~~~~ve~vl~e 452 (1115)
... +++.-+.+-|-|-...||-.|.++++.+.... ++++.....| .-+|+-+.-+--
T Consensus 153 ~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~----~~~~~~~~~~~~llP~~l~vl~~--------------- 213 (1075)
T KOG2171|consen 153 LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL----ENNKSEVDKFRDLLPSLLNVLQE--------------- 213 (1075)
T ss_pred cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh----ccchHHHHHHHHHhHHHHHHhHh---------------
Confidence 332 66777888899999899999999999866542 1223333344 445555443210
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh--hcCCCcHHHHHHHHHHHHHHhhh
Q 001247 453 SLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQR-LQQEMQRYLSLRQM--HQDGDAPEIQKKILFCFRVMSRS 529 (1115)
Q Consensus 453 ~LlP~~~~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~-~~~~~~~~l~~~~~--~~~~~~~~~~~kl~~~i~~Ls~~ 529 (1115)
.++.. . .+..-.++ ++|.+++..-.+ ++..+...++++-+ .+.+-++.+....-.+|-+++..
T Consensus 214 -~i~~~--d---~~~a~~~l--------~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 214 -VIQDG--D---DDAAKSAL--------EALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred -hhhcc--c---hHHHHHHH--------HHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 00000 0 00000111 111222211111 33344444555432 12222334444444456666666
Q ss_pred cCCchhHHHHHHHHHhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHhhhccccchhHHH
Q 001247 530 FAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAK--HRLYDFLSTLSMKCSYLLFNKEHVK 607 (1115)
Q Consensus 530 fpd~~ka~~~l~kf~~l~D~r~~~llk~~~~~~s~~~~~~~a~~ellkkl~~~--~~~~~~~~~Ll~R~s~~i~n~s~V~ 607 (1115)
-|-..| +...+-++=+-.++.-.++.+.| .+..++ ++ +++. ...+.+-...+-|.|.-+=.+--.|
T Consensus 280 Ap~~~k------~~~~~~~~lv~~~l~~mte~~~D-~ew~~~-d~----~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p 347 (1075)
T KOG2171|consen 280 APAMCK------KLALLGHTLVPVLLAMMTEEEDD-DEWSNE-DD----LDEDDEETPYRAAEQALDRLALHLGGKQVLP 347 (1075)
T ss_pred hHHHhh------hchhhhccHHHHHHHhcCCcccc-hhhccc-cc----cccccccCcHHHHHHHHHHHHhcCChhhehH
Confidence 333333 33333444444455444444444 222111 00 1111 1123344445555555554454455
Q ss_pred HHHHHHHhhcccchhhhhHHHHHHHHHHHhhCCcCccccHHHHHHHH----hhccccchHhHHHHHHHhhcchHhhhhcc
Q 001247 608 EILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLL----KEENEIIKEGILHVLAKAGGTIREQLAAT 683 (1115)
Q Consensus 608 ~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~~~l----~~~~~~~~~~~L~~L~~~~~~~~~~~~~~ 683 (1115)
-++..+..-..+.+-.....|+--|-.|+.-++.+-.++.++++.++ .+..+.+...++.++.+.+..+...+...
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 55554433222222234455666777788888888888876666654 44556677888888887764432111110
Q ss_pred -cchHHHH-HHHHhhcCChHHHHHHHHHHHhhcCCCccc----hHHHHHHHHHHhhhhc-C--CCchHHHHHHHHHhhcc
Q 001247 684 -SSSVDLL-LERLCLEGSRRQAKYAVHALAAITKDDGLK----SLSVLYKRLVDMLEEK-T--HLPAVLQSLGCIAQTAM 754 (1115)
Q Consensus 684 -~~~l~~~-L~~la~~Gtp~~AK~Av~~L~~~~~~~~~~----~~~~l~~~l~~~l~~~-~--~~~~~L~sLa~ia~~~p 754 (1115)
.+.+.+. +..+-..++|+.-.||+.++....-.-... ++..+++.....|..+ + -....++++|.+|.-+-
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 0111211 223334577888889999987444222122 3334444333334322 2 34457889999999988
Q ss_pred cccccchHHHHHHHHHhhhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccC
Q 001247 755 PVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYG 834 (1115)
Q Consensus 755 ~~f~~~~~~I~~fiik~iL~~~~~~~~~~~~~W~~~~~~~~~K~~aLK~lvn~l~~~~~~~~~~~~~~l~~lL~~i~~~G 834 (1115)
..|...-+.++.++. ++|..+.. ++-.+.+.|. +.|++-.-++...+...+.+..++.++-.+ .+|
T Consensus 508 ~~F~pY~d~~Mp~L~-~~L~n~~~----------~d~r~Lrgkt--mEcisli~~AVGke~F~~~a~eliqll~~~-~~~ 573 (1075)
T KOG2171|consen 508 EKFIPYFDRLMPLLK-NFLQNADD----------KDLRELRGKT--MECLSLIARAVGKEKFLPLAEELIQLLLEL-QGS 573 (1075)
T ss_pred hhhHhHHHHHHHHHH-HHHhCCCc----------hhhHHHHhhH--HHHHHHHHHHhhhhhhhHhHHHHHHHHHhh-ccc
Confidence 889888888988864 55544321 1112333343 555554444454455677777778776543 244
Q ss_pred ccccCCC-CChhHHhhhhHHHHH
Q 001247 835 EMSEDIE-SSSVDKAHLRLASAK 856 (1115)
Q Consensus 835 el~~~~~-t~~~~~srLRL~Aa~ 856 (1115)
+.....+ ++....+|-|++-+.
T Consensus 574 ~~~~dd~~~sy~~~~warmc~il 596 (1075)
T KOG2171|consen 574 DQDDDDPLRSYMIAFWARMCRIL 596 (1075)
T ss_pred chhhccccHHHHHHHHHHHHHHh
Confidence 4443333 344566666665543
No 5
>PTZ00429 beta-adaptin; Provisional
Probab=98.19 E-value=0.007 Score=76.57 Aligned_cols=122 Identities=14% Similarity=0.071 Sum_probs=95.8
Q ss_pred HHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHH
Q 001247 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1115)
Q Consensus 246 h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~ 325 (1115)
|--+....+..|++..-++..+...|.+.|+.+|-.|.+++|.+-. ..-.+.+-....+-..|.+|-||...+-
T Consensus 89 YLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAal 162 (746)
T PTZ00429 89 YLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAAM 162 (746)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 5555556677899999999999999999999999999999996543 2233445555666678999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh
Q 001247 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1115)
Q Consensus 326 ~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~ 373 (1115)
++.++...+|+.-....+++.|.+.|.|.|..|-..|+.++.++....
T Consensus 163 ai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 163 GLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 999988888864223456778888899999999999999888775433
No 6
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.05 E-value=0.01 Score=76.78 Aligned_cols=134 Identities=21% Similarity=0.267 Sum_probs=99.9
Q ss_pred hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC
Q 001247 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1115)
Q Consensus 297 ~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~ 376 (1115)
|...|...-+.-|+=-.-..++||.+++++...|....|+-.-..++-.++..|++|+--.||-|||.-++.......+.
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH
Confidence 34444444444444455778999999999999998887764334688899999999999999999999998654433332
Q ss_pred CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhh-hccCCC
Q 001247 377 IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL-YDKDFG 442 (1115)
Q Consensus 377 v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~il~~~-y~~d~~ 442 (1115)
-.+-...+++|+.|--..|||.||+.+-.+|-.+ +.|.-||.-.-... .++|-+
T Consensus 890 -~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-----------pdf~~i~~~cakmlrRv~DEE 944 (1692)
T KOG1020|consen 890 -IFQYYDQIIERILDTGVSVRKRVIKILRDICEET-----------PDFSKIVDMCAKMLRRVNDEE 944 (1692)
T ss_pred -HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-----------CChhhHHHHHHHHHHHhccch
Confidence 2345668899999999999999999999999874 45666666555443 366644
No 7
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.99 E-value=0.12 Score=64.72 Aligned_cols=365 Identities=15% Similarity=0.168 Sum_probs=201.2
Q ss_pred CChHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHH
Q 001247 21 STKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKD 100 (1115)
Q Consensus 21 ~~~~~Ll~rL~~l~~~L~~~~Q~~~~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkd 100 (1115)
..+.+|.++|++-+-.| |- ++...+.+.|+ ++|.-++.+||-++.-|++=+-- --..++++.
T Consensus 24 MAtsDLm~eLqkdsi~L---d~-------dSe~kvv~~lL--klL~D~ngEVQnlAVKClg~lvs------Kvke~~le~ 85 (1233)
T KOG1824|consen 24 MATSDLMTELQKDSIKL---DD-------DSERKVVKMLL--KLLEDKNGEVQNLAVKCLGPLVS------KVKEDQLET 85 (1233)
T ss_pred hhHHHHHHHHHhhhhhc---cc-------cchhHHHHHHH--HHHhccCcHHHHHHHHHHHHHHh------hchHHHHHH
Confidence 45677888887753333 22 33344444443 47788999999999999875541 112244554
Q ss_pred HHHHHHHhccC-CCCCCCCChhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHh----hcC-CChhcHHHHHHHH
Q 001247 101 IFQLIVGTFSG-LKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAV----ASD-DHPESVLSSMQTI 174 (1115)
Q Consensus 101 if~l~~~~~~~-L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~~~~li~~lF~~~~~~----v~~-~~~~~v~~~m~~I 174 (1115)
+-.=+.. + +++.+..-|.-...+...++++.-++ ...+-...|+.|... +.. +...-+.-..++|
T Consensus 86 ~ve~L~~---~~~s~keq~rdissi~Lktvi~nl~P~~------~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDi 156 (1233)
T KOG1824|consen 86 IVENLCS---NMLSGKEQLRDISSIGLKTVIANLPPSS------SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDI 156 (1233)
T ss_pred HHHHHhh---hhccchhhhccHHHHHHHHHHhcCCCcc------ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHH
Confidence 3332222 2 34444444444455555555543210 122333344444333 222 1222356667888
Q ss_pred HHHHhcccccccH----HHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHhh-cCCCC-CCCCcch-HHH
Q 001247 175 MIVLLEESEDIQE----DLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSM-SGDSR-PGHSHID-YHE 247 (1115)
Q Consensus 175 l~~vI~e~~~i~~----~~ld~il~~~~~~~~~~a~~la~~v~~~~~~~l~~~i~~~~~~~l-~~~~~-~~~~~~~-~h~ 247 (1115)
|..++.-..++-+ .++..++-++..++. +-++=|.-.+..-+....+.+-.++.+.+ .|=+. ...+..+ .-.
T Consensus 157 l~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~-aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq 235 (1233)
T KOG1824|consen 157 LADVLSRFGTLLPNFHLSILKCLLPQLQSPRL-AVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQ 235 (1233)
T ss_pred HHHHHHhhcccCcchHHHHHHHHhhcccChHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 8888888666333 334444444433221 11222222222222222222222222222 11111 1111221 234
Q ss_pred HHHHHHhhC----chhhhhhhhhhhccc---cCCchHHHHHHHHHHHHhhcCCC---------------------CChhh
Q 001247 248 VIYDVYRCS----PQILSGVVPYLTGEL---LTDQLDTRLKAVGLVGDLFAVPG---------------------SANNE 299 (1115)
Q Consensus 248 li~el~~~~----P~lL~~Vip~Le~eL---~se~~~~R~~At~~lg~m~s~~~---------------------~~~~~ 299 (1115)
.+-++.+.+ -+-+..++|.+.+.. ..+++++|....+.+|-.+--.. .|+.-
T Consensus 236 ~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 236 CLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCC
Confidence 444444432 233455777777777 78899999999998886554321 11100
Q ss_pred -hcHHHHHHHHhc------------ccCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHHHcCCchhHHHHHHHH
Q 001247 300 -QFHSVFSEFLKR------------LTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVA 364 (1115)
Q Consensus 300 -~~~~~~~~fL~R------------~~D~s~~VR~~~v~~~~~il~~~~~~--~~~~~l~~~l~~rL~D~DekVR~aaV~ 364 (1115)
+.-+.=+.|+.- =.|.|=.||.+..++....+.++++. +--+.+-..+..|+.|-+|.|+..+..
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~ 395 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFH 395 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHH
Confidence 001122222222 23555689999999999999887652 122456678899999999999999999
Q ss_pred HHHHhhhhhcCC---------------------CCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 001247 365 VICDVACHALNS---------------------IPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1115)
Q Consensus 365 ~i~~la~~~l~~---------------------v~~---~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~ 413 (1115)
++-++-...... ++. -+.+.++.-+|+|+.+-|.-|+..|..+-+.+.+
T Consensus 396 ~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~ 468 (1233)
T KOG1824|consen 396 AYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPG 468 (1233)
T ss_pred HHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcc
Confidence 998775432211 111 2457889999999999999999999999988643
No 8
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.98 E-value=0.00089 Score=82.17 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=98.2
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHH
Q 001247 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1115)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v 324 (1115)
.|-.+..++...|+++.-++..+..+|.++|+.+|-.|.+++|.+-.. +++ +.+...-.+-..|.+|.||.+.+
T Consensus 62 ~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~---~~~---~~l~~~v~~ll~~~~~~VRk~A~ 135 (526)
T PF01602_consen 62 GYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP---EMA---EPLIPDVIKLLSDPSPYVRKKAA 135 (526)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH---HHH---HHHHHHHHHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc---chh---hHHHHHHHHHhcCCchHHHHHHH
Confidence 477788889999999999999999999999999999999999996622 233 55555666666799999999999
Q ss_pred HHhHHHHhcCCCCCChHH-HHHHHHHHcCCchhHHHHHHHHHHHHh
Q 001247 325 EHVKSCLLTDPSRADAPQ-ILTALCDRLLDFDENVRKQVVAVICDV 369 (1115)
Q Consensus 325 ~~~~~il~~~~~~~~~~~-l~~~l~~rL~D~DekVR~aaV~~i~~l 369 (1115)
-+..++....|+. ... +.+.+...|.|+|..|+.+|+.+++++
T Consensus 136 ~~l~~i~~~~p~~--~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 136 LALLKIYRKDPDL--VEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHCHCC--HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHH--HHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 9999999887763 334 789999999999999999999999887
No 9
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.65 E-value=0.084 Score=68.88 Aligned_cols=166 Identities=19% Similarity=0.194 Sum_probs=131.2
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhc---cccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHH
Q 001247 245 YHEVIYDVYRCSPQILSGVVPYLTG---ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRM 321 (1115)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~---eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~ 321 (1115)
.-.+|+..--..-++..+.=|.|.. -|..+...+|..|.+.|..|...++ ..-.+|+.=.+--||++|-+.+||-
T Consensus 796 ~a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVRE 873 (1692)
T KOG1020|consen 796 DAKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVRE 873 (1692)
T ss_pred hHHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHH
Confidence 3444444444455555554444433 3445679999999999999998865 5678999999999999999999999
Q ss_pred HHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCC-CHHHHHHHHHhhccCChhHHHHH
Q 001247 322 SVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI-PVETVKLVAERLRDKSVLVKRYT 400 (1115)
Q Consensus 322 ~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v-~~~~l~~l~eR~rDKk~~VR~~A 400 (1115)
+.|+..+.++.++|+ ...+.-+.+.+|..|+---||.-|++.++++....+... =.++...+..|+-|---.|-+-+
T Consensus 874 AaldLvGrfvl~~~e--~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv 951 (1692)
T KOG1020|consen 874 AALDLVGRFVLSIPE--LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLV 951 (1692)
T ss_pred HHHHHHhhhhhccHH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHH
Confidence 999999999999886 456888999999999999999999999999765444322 23456677799999988899999
Q ss_pred HHHHHHHHHHhhhh
Q 001247 401 MERLADIFRGCCLR 414 (1115)
Q Consensus 401 i~~L~~ly~~~~~~ 414 (1115)
-..+-++|-.=++.
T Consensus 952 ~etf~klWF~p~~~ 965 (1692)
T KOG1020|consen 952 RETFLKLWFTPVPE 965 (1692)
T ss_pred HHHHHHHhccCCCc
Confidence 99999999865443
No 10
>PRK09687 putative lyase; Provisional
Probab=97.64 E-value=0.00043 Score=78.06 Aligned_cols=59 Identities=17% Similarity=0.090 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 001247 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1115)
Q Consensus 343 l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ 406 (1115)
.++.|...|.|+|..||..|+.+++.+. .-+.+....|...+.|....||..|+.+||+
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~~-----~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSNK-----YDNPDIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 4444444455555555555444444331 1122333344444455555555555555544
No 11
>PRK09687 putative lyase; Provisional
Probab=97.63 E-value=0.00037 Score=78.55 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=103.8
Q ss_pred HHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhc-ccCCChhHHHHHH
Q 001247 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR-LTDRIVAVRMSVL 324 (1115)
Q Consensus 246 h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R-~~D~s~~VR~~~v 324 (1115)
...+..|...-.. .+++.+..-+.++|..+|..|+..||++ +.++.. -+..+.....- .+|.++.||...+
T Consensus 41 ~~A~~aL~~~~~~---~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~----~~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 41 ISSIRVLQLRGGQ---DVFRLAIELCSSKNPIERDIGADILSQL-GMAKRC----QDNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred HHHHHHHHhcCcc---hHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccc----hHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4455556555432 2334444456789999999999999985 443321 12333333333 4999999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 001247 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1115)
Q Consensus 325 ~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L 404 (1115)
...+++=...+. ....+.+.+...+.|.|..||.+|+.+++.+. +.+.+..|...+.|..+.||..|+.+|
T Consensus 113 ~aLG~~~~~~~~--~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aL 183 (280)
T PRK09687 113 NATGHRCKKNPL--YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFAL 183 (280)
T ss_pred HHHhcccccccc--cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999875221111 12367788888999999999999999887432 355778888999999999999999999
Q ss_pred HHH
Q 001247 405 ADI 407 (1115)
Q Consensus 405 ~~l 407 (1115)
|++
T Consensus 184 g~~ 186 (280)
T PRK09687 184 NSN 186 (280)
T ss_pred hcC
Confidence 998
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.33 E-value=0.26 Score=60.46 Aligned_cols=277 Identities=13% Similarity=0.197 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHhh-hhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhh-hhhhhhccccCCchHHHHH
Q 001247 204 TARRLAMNVIEQCA-GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSG-VVPYLTGELLTDQLDTRLK 281 (1115)
Q Consensus 204 ~a~~la~~v~~~~~-~~l~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~-Vip~Le~eL~se~~~~R~~ 281 (1115)
.-..+|.+.+.+.. ..+-+.+...+...+..++ ..-..++-.-+..+++..|+++.. ++|.+..-|...|..++..
T Consensus 94 ~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~--~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~ 171 (526)
T PF01602_consen 94 YIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPS--PYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSA 171 (526)
T ss_dssp HHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHH
T ss_pred HHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHH
Confidence 34445544443332 2344444444444443321 111224677888899999999988 7999999999999999999
Q ss_pred HHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCCh--HHHHHHHHHHcCCchhHHH
Q 001247 282 AVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA--PQILTALCDRLLDFDENVR 359 (1115)
Q Consensus 282 At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~--~~l~~~l~~rL~D~DekVR 359 (1115)
|+.++..+ ..++..+..--|..++...+...+.+|-+++..++....+....+. .. ..+++.+...+...+..|+
T Consensus 172 a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~--~~~~~~~i~~l~~~l~s~~~~V~ 248 (526)
T PF01602_consen 172 ALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE--DADKNRIIEPLLNLLQSSSPSVV 248 (526)
T ss_dssp HHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh--hhhHHHHHHHHHHHhhccccHHH
Confidence 99999999 3322112233455555555455899999999999998875544332 23 4688999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhhhcc
Q 001247 360 KQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDK 439 (1115)
Q Consensus 360 ~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~ 439 (1115)
.+++..+..+..... +-...+..+..-+.++.+.||-.|+..+..+-..+. ..+. -+..++.++-
T Consensus 249 ~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~----------~~v~-~~~~~~~~l~-- 313 (526)
T PF01602_consen 249 YEAIRLIIKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP----------PAVF-NQSLILFFLL-- 313 (526)
T ss_dssp HHHHHHHHHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH----------HHHG-THHHHHHHHH--
T ss_pred HHHHHHHHHhhcchH--HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc----------hhhh-hhhhhhheec--
Confidence 999999987655433 223456677888889999999999888877765531 1111 1222222111
Q ss_pred CCCchhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHH
Q 001247 440 DFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKI 519 (1115)
Q Consensus 440 d~~~~~ve~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~kl 519 (1115)
...+..-|...+--++.-.++...+- +-..+.+|+ ++..+++++..+
T Consensus 314 -----------------~~~d~~Ir~~~l~lL~~l~~~~n~~~----------Il~eL~~~l------~~~~d~~~~~~~ 360 (526)
T PF01602_consen 314 -----------------YDDDPSIRKKALDLLYKLANESNVKE----------ILDELLKYL------SELSDPDFRREL 360 (526)
T ss_dssp -----------------CSSSHHHHHHHHHHHHHH--HHHHHH----------HHHHHHHHH------HHC--HHHHHHH
T ss_pred -----------------CCCChhHHHHHHHHHhhcccccchhh----------HHHHHHHHH------HhccchhhhhhH
Confidence 11234445555555565666654432 223333443 112345577777
Q ss_pred HHHHHHHhhhcCCc
Q 001247 520 LFCFRVMSRSFAEP 533 (1115)
Q Consensus 520 ~~~i~~Ls~~fpd~ 533 (1115)
-+.|..++..+|..
T Consensus 361 i~~I~~la~~~~~~ 374 (526)
T PF01602_consen 361 IKAIGDLAEKFPPD 374 (526)
T ss_dssp HHHHHHHHHHHGSS
T ss_pred HHHHHHHHhccCch
Confidence 77788888777554
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.12 E-value=0.048 Score=71.56 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=78.1
Q ss_pred hhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 001247 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1115)
Q Consensus 264 ip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l 343 (1115)
+|.|..-+..+|..+|..|+..||.+-..+. .....+.-..|.++.||...++..+.+ +. .+.
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~----~~a 839 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAELGCPPD---------DVAAATAALRASAWQVRQGAARALAGA----AA----DVA 839 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCcch---------hHHHHHHHhcCCChHHHHHHHHHHHhc----cc----cch
Confidence 3445555667778888888888887733211 111233334667788888888876541 11 245
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 001247 344 LTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1115)
Q Consensus 344 ~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~ 405 (1115)
++.|...|.|+|..||.+|+.+++.+ ..+......|...+.|....||++|...|.
T Consensus 840 ~~~L~~~L~D~~~~VR~~A~~aL~~~------~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 840 VPALVEALTDPHLDVRKAAVLALTRW------PGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcc------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 67777778888888888888877753 224455666777778888888888887775
No 14
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.17 Score=62.18 Aligned_cols=373 Identities=13% Similarity=0.152 Sum_probs=186.6
Q ss_pred cccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHH
Q 001247 270 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1115)
Q Consensus 270 eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~ 349 (1115)
-|.+.....-+.|.+-+=-|++. |-+... +|-+-.+--.-++++|+..+-=+.-+.-..+|+... -=++.+++
T Consensus 43 lLdSnkd~~KleAmKRIia~iA~-G~dvS~----~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk 115 (968)
T KOG1060|consen 43 LLDSNKDSLKLEAMKRIIALIAK-GKDVSL----LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQK 115 (968)
T ss_pred HHhccccHHHHHHHHHHHHHHhc-CCcHHH----HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHh
Confidence 35567777777777655445544 334433 444445555666777776554444443445665322 23689999
Q ss_pred HcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccch
Q 001247 350 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIP 429 (1115)
Q Consensus 350 rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP 429 (1115)
-|.||...+|..|..+.+++-.. .|-+=+|-++.+-.+|--+-||+.|...+-++|+.-.. ...++..+=
T Consensus 116 ~L~DpN~LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e-------~k~qL~e~I 185 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE-------QKDQLEEVI 185 (968)
T ss_pred hhcCCcHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh-------hHHHHHHHH
Confidence 99999999999988887754322 22233567899999999999999999999999986211 111222222
Q ss_pred HHHhhhhhccCCCchhHHHH--hhhcCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001247 430 GKILRCLYDKDFGSDTIESV--LCGSLFPTGFSV-KDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQM 506 (1115)
Q Consensus 430 ~~il~~~y~~d~~~~~ve~v--l~e~LlP~~~~~-~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~~~~~~~~~l~~~~~ 506 (1115)
.++|+ +++ .-.|-.+ .|+..=|-.++- ..--+++.+++-.+|+=+.-.+
T Consensus 186 ~~LLa---D~s--plVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvl----------------------- 237 (968)
T KOG1060|consen 186 KKLLA---DRS--PLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVL----------------------- 237 (968)
T ss_pred HHHhc---CCC--CcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHH-----------------------
Confidence 22221 222 1111111 122222211100 0112333333333333221111
Q ss_pred hcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHH-hhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCc-
Q 001247 507 HQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILD-QLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR- 584 (1115)
Q Consensus 507 ~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~-~l~D~r~~~llk~~~~~~s~~~~~~~a~~ellkkl~~~~~- 584 (1115)
|...++|--..||+|+.....++.=. .-|....|.-+++=...+.|.+-+-++.+=++- +.++
T Consensus 238 ------------I~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~---S~n~s 302 (968)
T KOG1060|consen 238 ------------INMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ---SRNPS 302 (968)
T ss_pred ------------HHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh---cCCcH
Confidence 22223443355666654333322111 011111111112112234455444333333332 2222
Q ss_pred hHHHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhCCcCccccHHHHHHHHhhcccc-chH
Q 001247 585 LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEI-IKE 663 (1115)
Q Consensus 585 ~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~~~l~~~~~~-~~~ 663 (1115)
+.-.+-.+.|-.+|.-=+.--++.|+..+... . ++ ....+.-+..||...|++|.+|.+..- +...|+. +.-
T Consensus 303 VVmA~aql~y~lAP~~~~~~i~kaLvrLLrs~-~-~v---qyvvL~nIa~~s~~~~~lF~P~lKsFf--v~ssDp~~vk~ 375 (968)
T KOG1060|consen 303 VVMAVAQLFYHLAPKNQVTKIAKALVRLLRSN-R-EV---QYVVLQNIATISIKRPTLFEPHLKSFF--VRSSDPTQVKI 375 (968)
T ss_pred HHHHHHhHHHhhCCHHHHHHHHHHHHHHHhcC-C-cc---hhhhHHHHHHHHhcchhhhhhhhhceE--eecCCHHHHHH
Confidence 22223345565555544444466677644322 1 11 133344556678899999999976553 3333443 222
Q ss_pred hHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcC
Q 001247 664 GILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITK 715 (1115)
Q Consensus 664 ~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la~~Gtp~~AK~Av~~L~~~~~ 715 (1115)
.=|++|+..... .+ -+....-++.|.......-|--||++|+....
T Consensus 376 lKleiLs~La~e--sn----i~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~ 421 (968)
T KOG1060|consen 376 LKLEILSNLANE--SN----ISEILRELQTYIKSSDRSFAAAAVKAIGRCAS 421 (968)
T ss_pred HHHHHHHHHhhh--cc----HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 335666655432 01 11233445566666666677778888875544
No 15
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.91 E-value=0.0054 Score=56.01 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=66.1
Q ss_pred HHhcc-cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 001247 308 FLKRL-TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVA 386 (1115)
Q Consensus 308 fL~R~-~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~ 386 (1115)
.+... +|.++.||...+...+.+ ...++++.|...+.|+|..||.+|+.+++.+. +.+.+..+.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~~~~~L~ 68 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIG-------DPEAIPALI 68 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHHTHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHHHHHHHH
Confidence 34445 699999999999887731 13478999999999999999999999999663 345677778
Q ss_pred Hhhcc-CChhHHHHHHHHHH
Q 001247 387 ERLRD-KSVLVKRYTMERLA 405 (1115)
Q Consensus 387 eR~rD-Kk~~VR~~Ai~~L~ 405 (1115)
+.+.| ....||..|+..||
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 87877 45678999999987
No 16
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.90 E-value=0.022 Score=59.95 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=84.8
Q ss_pred ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh
Q 001247 316 IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 395 (1115)
Q Consensus 316 s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~ 395 (1115)
+|.||.-++-..+++...+|. .....++.+..+|.|+|+.||..|+..+..+....+-.+.+.++..+...+.|..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 478999999999999998885 345678899999999999999999999999999888888888878888899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 001247 396 VKRYTMERLADIFRGC 411 (1115)
Q Consensus 396 VR~~Ai~~L~~ly~~~ 411 (1115)
||..|...+..+....
T Consensus 79 Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 79 IRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998874
No 17
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.7 Score=56.08 Aligned_cols=231 Identities=16% Similarity=0.188 Sum_probs=147.0
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCH--
Q 001247 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV-- 379 (1115)
Q Consensus 302 ~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~-- 379 (1115)
.+++-.-|..|.|+.+.||-+...+++.++..-+.. -...++..+..-+.+.-++=-.++++.++-++......++.
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l 293 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL 293 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence 566667777889999999999999988766543322 24567777777777777777788888888777655544433
Q ss_pred -HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhhhccCCC-chhHHHHhhhcCCCC
Q 001247 380 -ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG-SDTIESVLCGSLFPT 457 (1115)
Q Consensus 380 -~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~-~~~ve~vl~e~LlP~ 457 (1115)
+++..+.+.+-|-|+.||+.++.+|-++=... ++ ..+.-+=.++++|+-++.-+ .+.++.+..+.
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-----dN----~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~tt---- 360 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-----DN----PDIQKIIPTLLDALADPSCYTPECLDSLGATT---- 360 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-----cc----HHHHHHHHHHHHHhcCcccchHHHHHhhccee----
Confidence 56788999999999999999999998765542 11 12334455677776443311 23444443332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHH
Q 001247 458 GFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537 (1115)
Q Consensus 458 ~~~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~ 537 (1115)
+....|+.+..-+.-++.+.-. +-+..++++...+|..+++.-+||....
T Consensus 361 -------------FV~~V~~psLalmvpiL~R~l~-----------------eRst~~kr~t~~IidNm~~LveDp~~la 410 (569)
T KOG1242|consen 361 -------------FVAEVDAPSLALMVPILKRGLA-----------------ERSTSIKRKTAIIIDNMCKLVEDPKDLA 410 (569)
T ss_pred -------------eeeeecchhHHHHHHHHHHHHh-----------------hccchhhhhHHHHHHHHHHhhcCHHHHh
Confidence 3345565544443334333211 1122345566666777888888888877
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 001247 538 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAK 582 (1115)
Q Consensus 538 ~~l~kf~~l~D~r~~~llk~~~~~~s~~~~~~~a~~ellkkl~~~ 582 (1115)
..+..+. +.+...+.+. .|++.+ ...++...+++|+|..
T Consensus 411 pfl~~Ll----p~lk~~~~d~-~PEvR~-vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 411 PFLPSLL----PGLKENLDDA-VPEVRA-VAARALGALLERLGEV 449 (569)
T ss_pred hhHHHHh----hHHHHHhcCC-ChhHHH-HHHHHHHHHHHHHHhh
Confidence 6666655 3444455555 666655 3355777788888764
No 18
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.72 E-value=0.0082 Score=78.56 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=90.2
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~ 342 (1115)
.++.|-..|..+++.+|..|++.||+.-. +...........|.++.||...++....+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc------
Confidence 55677777889999999999999998631 33444555566899999999999998876433221
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 343 l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
.+.|...|.|+|+.||.+|+.++..+.... . ..+...+.|+.+.||.+|+..|+.+
T Consensus 686 -~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----~---~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 686 -APALRDHLGSPDPVVRAAALDVLRALRAGD-----A---ALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred -hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----H---HHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 235556778899999999999888654211 1 2346688999999999999999974
No 19
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=1.8 Score=51.92 Aligned_cols=434 Identities=15% Similarity=0.154 Sum_probs=225.0
Q ss_pred HHHHHHHHHh-hhhhhHHHHHHHHHhhcCCCC-CCCCcc-----hHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHH
Q 001247 207 RLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSR-PGHSHI-----DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR 279 (1115)
Q Consensus 207 ~la~~v~~~~-~~~l~~~i~~~~~~~l~~~~~-~~~~~~-----~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R 279 (1115)
++.++..+++ .+++...|.+..++.++..+. ..+.++ -++-+=.+--.+.-.++.+|++.+ ...|..+|
T Consensus 26 k~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf----~D~d~~vR 101 (675)
T KOG0212|consen 26 KLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCF----SDQDSQVR 101 (675)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhc----cCccceee
Confidence 3444444332 367777777777776654322 111111 112222222223333444455544 44788999
Q ss_pred HHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHH---HHHhHHHHhcCCCCCChHHHHHHHHHHcCCchh
Q 001247 280 LKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV---LEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1115)
Q Consensus 280 ~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~---v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~De 356 (1115)
--|.+.+=.+-..-..++..-++.+|....+=+.|.+..||-.. -...++|.....+.-...++++-|.+|+.+.+.
T Consensus 102 yyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~ 181 (675)
T KOG0212|consen 102 YYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINP 181 (675)
T ss_pred eHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCc
Confidence 99998877666544446777889999999999999999998543 233444554433222356899999999999999
Q ss_pred HHHHHHHHHHHHhhhh-hcCCC--CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccC-C--C-------c--c
Q 001247 357 NVRKQVVAVICDVACH-ALNSI--PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN-G--S-------I--N 421 (1115)
Q Consensus 357 kVR~aaV~~i~~la~~-~l~~v--~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~-~--~-------~--~ 421 (1115)
-+|..+|.-+.-+... .++-+ -++++.-+..=+-|-..+||..+=+.|+.+-+....+... + . . +
T Consensus 182 ~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 182 MTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred hHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC
Confidence 9999999977755431 11111 1245555666678899999999999999988876543321 0 0 0 0
Q ss_pred ------hhhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCCCCHHHH----HHHHHH--HHhcCCHHHHHHHHHHHHH
Q 001247 422 ------QNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDR----VRHWVR--IFSGFDRIEMKALEKILEQ 489 (1115)
Q Consensus 422 ------~~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R----~~~ll~--l~~~lD~~~~ka~~~il~~ 489 (1115)
...+.||-.- .++.....-..-.-+++.++|.-.+.++. .....+ +.+-.++...+ ..+ .
T Consensus 262 s~~~iq~~al~Wi~ef----V~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~--~~i--d 333 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEF----VKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLK--EEI--D 333 (675)
T ss_pred CcHHHHHHHHHHHHHH----hcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhc--ccc--c
Confidence 0123444111 12222111111112256788875443332 222221 22222221111 000 0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHh---hhcCCchhHHHH------HHHHHhhhhHH---HHHHHHH
Q 001247 490 KQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMS---RSFAEPAKAEEN------FLILDQLKDAN---VWKILMN 557 (1115)
Q Consensus 490 k~~~~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls---~~fpd~~ka~~~------l~kf~~l~D~r---~~~llk~ 557 (1115)
-..+-..+++|+. .|.++ +++. +.+|+. ..+|...-...+ |..+..--|.= ...++..
T Consensus 334 ~~~ii~vl~~~l~-------~~~~~--tri~-~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 334 YGSIIEVLTKYLS-------DDREE--TRIA-VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred hHHHHHHHHHHhh-------cchHH--HHHH-HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 0111222333332 12222 2322 244443 444554332211 11111111211 1222223
Q ss_pred HhccCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHh
Q 001247 558 LLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILAR 637 (1115)
Q Consensus 558 ~~~~~s~~~~~~~a~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~ 637 (1115)
++....+. ..++....++..-.....+.+.--.|.-|.-++..|.++|=.-+..+-.. .++-..++..-+.|+.+--
T Consensus 404 i~~s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~--e~nl~FAstMV~~Ln~iLl 480 (675)
T KOG0212|consen 404 ICSSSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER--EENLKFASTMVQALNTILL 480 (675)
T ss_pred HhcCcccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc--cccchHHHHHHHHHHhhhc
Confidence 33333222 22334444444443333344445557788889999999987665544221 3344566778899999999
Q ss_pred hCCcCccccHHHHHHHHhh-ccccchHhHHHHHHH
Q 001247 638 FSPLLLGGTEEELVNLLKE-ENEIIKEGILHVLAK 671 (1115)
Q Consensus 638 ~~P~lf~~~~~~L~~~l~~-~~~~~~~~~L~~L~~ 671 (1115)
+.|++|. |.+.|++ .++. .......|++
T Consensus 481 TStELf~-----LR~~Lk~lsn~e-s~~lF~cLy~ 509 (675)
T KOG0212|consen 481 TSTELFQ-----LRNKLKDLSNEE-SQNLFCCLYR 509 (675)
T ss_pred ccHHHHH-----HHHHHHhccChh-hhHHHHHHHH
Confidence 9999995 5555554 2221 2234555553
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.58 E-value=0.27 Score=60.29 Aligned_cols=242 Identities=19% Similarity=0.271 Sum_probs=155.7
Q ss_pred hhcHHHHHHHHHHHHhccccc-----ccHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHH--------HHHHH
Q 001247 164 PESVLSSMQTIMIVLLEESED-----IQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIK--------QFLVS 230 (1115)
Q Consensus 164 ~~~v~~~m~~Il~~vI~e~~~-----i~~~~ld~il~~~~~~~~~~a~~la~~v~~~~~~~l~~~i~--------~~~~~ 230 (1115)
.+.|....+..+..++.+.+. +..+++..|+..+..... ...+.|.+++...+.. ...+. .-+.+
T Consensus 90 ~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~-~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~ 167 (503)
T PF10508_consen 90 SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL-SVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKS 167 (503)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH-HHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHH
Confidence 356777777777777777665 567777777777754433 3334444444443321 12222 22333
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHhhCchhhhh-----hhhhhhccccCCchHHHHHHHHHHHHhhcCC-CCChhhhcHHH
Q 001247 231 SMSGDSRPGHSHIDYHEVIYDVYRCSPQILSG-----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSV 304 (1115)
Q Consensus 231 ~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~-----Vip~Le~eL~se~~~~R~~At~~lg~m~s~~-~~~~~~~~~~~ 304 (1115)
.+... .+....++++++.++.+.+|+.+.. +++.+..+|.++|+-+|+.|.+++++|-..+ |..+..+. .+
T Consensus 168 l~~~~--~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~-gi 244 (503)
T PF10508_consen 168 LMSQS--SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQ-GI 244 (503)
T ss_pred HHhcc--CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhC-CH
Confidence 33221 1123457899999999999988765 5689999999999999999999999998855 33333222 34
Q ss_pred HHHHHhcc----cCC-ChhHHH-HHHHHhHHHHhcCCCC--CChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh---
Q 001247 305 FSEFLKRL----TDR-IVAVRM-SVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA--- 373 (1115)
Q Consensus 305 ~~~fL~R~----~D~-s~~VR~-~~v~~~~~il~~~~~~--~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~--- 373 (1115)
+....... .|. ...+.+ .-+++.+.+...+|.. ...+.+++.+.+.+...|...|..|+.+++.++.+.
T Consensus 245 ~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~ 324 (503)
T PF10508_consen 245 FDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK 324 (503)
T ss_pred HHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH
Confidence 44444333 333 222221 2235555544444431 122456666677777899999999999999987522
Q ss_pred --c-CCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 374 --L-NSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 374 --l-~~v~~---~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
+ ..-+. .+++.++++.+.-+..+|..|+..++.++..
T Consensus 325 ~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 325 QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 3 11122 3688999999999999999999999999964
No 21
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=1.3 Score=55.01 Aligned_cols=355 Identities=17% Similarity=0.148 Sum_probs=200.5
Q ss_pred hhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC
Q 001247 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR 337 (1115)
Q Consensus 258 ~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~ 337 (1115)
+++.-+.-.|...|++.|--+==+|.-++|.|++. .++ |++...--.-.+-.++-||.+.+-++-.++..-|+
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s~---Ema---rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~- 175 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMA---RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD- 175 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHh---HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch-
Confidence 34445566788999999988889999999999975 233 33333333333346889999999999999988886
Q ss_pred CChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccC
Q 001247 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN 417 (1115)
Q Consensus 338 ~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~ 417 (1115)
..+-.+....++|.|-|..|=.+++.-+.++...+++ .+. +-|| ....|-++-+....
T Consensus 176 -l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-----~l~----~fr~--------l~~~lV~iLk~l~~---- 233 (866)
T KOG1062|consen 176 -LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-----ALS----YFRD--------LVPSLVKILKQLTN---- 233 (866)
T ss_pred -HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-----HHH----HHHH--------HHHHHHHHHHHHhc----
Confidence 3456778888999999999999988877766554432 221 1111 12222222222111
Q ss_pred CCcch-hhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 001247 418 GSINQ-NEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQE 496 (1115)
Q Consensus 418 ~~~~~-~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~~~~~ 496 (1115)
+.... -.+..||+-.|+ -|.-|++.+++.-|+++...+..++.+..+
T Consensus 234 ~~yspeydv~gi~dPFLQ----------------------------i~iLrlLriLGq~d~daSd~M~DiLaqvat---- 281 (866)
T KOG1062|consen 234 SGYSPEYDVHGISDPFLQ----------------------------IRILRLLRILGQNDADASDLMNDILAQVAT---- 281 (866)
T ss_pred CCCCCccCccCCCchHHH----------------------------HHHHHHHHHhcCCCccHHHHHHHHHHHHHh----
Confidence 11000 123334333332 356678888888888888777777655433
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCch---hHHHHHHHHHhhhhHHHHH-HHHHHhcc-CCCHHHHHHH
Q 001247 497 MQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPA---KAEENFLILDQLKDANVWK-ILMNLLDS-NTSFDQAFTG 571 (1115)
Q Consensus 497 ~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~---ka~~~l~kf~~l~D~r~~~-llk~~~~~-~s~~~~~~~a 571 (1115)
-++ .+..--.+-|-.+++-|....|++. .|...|-||-.-+|+++.+ .|..++.. +.|-..+.+=
T Consensus 282 ------ntd----sskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH 351 (866)
T KOG1062|consen 282 ------NTD----SSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH 351 (866)
T ss_pred ------ccc----ccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH
Confidence 011 1111122334555555655556654 5566777887667766544 22222111 1233333334
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhCCcCccccH-HHH
Q 001247 572 RDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE-EEL 650 (1115)
Q Consensus 572 ~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~-~~L 650 (1115)
+.-++.-+.++-+ .++.=-.-.++.++|.+||..+++. ||..+-+. ++-|++.. ...
T Consensus 352 r~tIleCL~DpD~---SIkrralELs~~lvn~~Nv~~mv~e------------------Ll~fL~~~-d~~~k~~~as~I 409 (866)
T KOG1062|consen 352 RSTILECLKDPDV---SIKRRALELSYALVNESNVRVMVKE------------------LLEFLESS-DEDFKADIASKI 409 (866)
T ss_pred HHHHHHHhcCCcH---HHHHHHHHHHHHHhccccHHHHHHH------------------HHHHHHhc-cHHHHHHHHHHH
Confidence 4555555555421 1111011135567888888888773 34444333 44455543 333
Q ss_pred HHHHhhccc---cchHhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHh
Q 001247 651 VNLLKEENE---IIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAA 712 (1115)
Q Consensus 651 ~~~l~~~~~---~~~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la~~Gtp~~AK~Av~~L~~ 712 (1115)
+.+.+.=+| +-...++++|...|.++++. ...-+-++.-+|.+..=+|+++-|.+
T Consensus 410 ~~laEkfaP~k~W~idtml~Vl~~aG~~V~~d-------v~~nll~LIa~~~~e~~~y~~~rLy~ 467 (866)
T KOG1062|consen 410 AELAEKFAPDKRWHIDTMLKVLKTAGDFVNDD-------VVNNLLRLIANAFQELHEYAVLRLYL 467 (866)
T ss_pred HHHHHhcCCcchhHHHHHHHHHHhcccccchh-------hHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 333333222 22355677777777664433 33445566677767777788777754
No 22
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.12 E-value=0.064 Score=58.41 Aligned_cols=147 Identities=18% Similarity=0.157 Sum_probs=105.4
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~ 342 (1115)
+++.+...+.+..-.+-..|..+++.++..-+..|....+.+....++|..|....||....++...++.+-+.. ..
T Consensus 54 ~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~ 130 (228)
T PF12348_consen 54 LLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PK 130 (228)
T ss_dssp --HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----H
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HH
Confidence 334566666667778888999999999987776776667888889999999999999999999999887754411 24
Q ss_pred H-HHHHHHHcCCchhHHHHHHHHHHHHhhhhhc---CCCC-----HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 001247 343 I-LTALCDRLLDFDENVRKQVVAVICDVACHAL---NSIP-----VETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1115)
Q Consensus 343 l-~~~l~~rL~D~DekVR~aaV~~i~~la~~~l---~~v~-----~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~ 412 (1115)
+ ...+..-..+-..+||..++..+..+..... ..+. ..+...+..-+.|.++.||+.|-..+..+|+.+-
T Consensus 131 ~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 131 ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 5 7788888999999999999998887654333 2222 3467899999999999999999999999999863
No 23
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.00 E-value=0.022 Score=51.89 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=65.4
Q ss_pred hhhhhccc-cCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 001247 264 VPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1115)
Q Consensus 264 ip~Le~eL-~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~ 342 (1115)
||.|-..| .+++..+|..|++++|++- .+.+-..++....|.++.||.+.+...+.+ . ..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~-------~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI-G-------DPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H-------HHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C-------CHH
Confidence 45666677 7889999999999999431 235566666666999999999999999864 1 246
Q ss_pred HHHHHHHHcCCc-hhHHHHHHHHHHH
Q 001247 343 ILTALCDRLLDF-DENVRKQVVAVIC 367 (1115)
Q Consensus 343 l~~~l~~rL~D~-DekVR~aaV~~i~ 367 (1115)
.+..|.+.+.|+ ++.||.+++.+++
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 888888888775 5567999888764
No 24
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.84 E-value=0.97 Score=50.62 Aligned_cols=231 Identities=12% Similarity=0.201 Sum_probs=152.4
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccC
Q 001247 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1115)
Q Consensus 63 ~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl 142 (1115)
..|.+.|..+|+-.--||++++-=..| -..+.+|..-++.||.+-| .|.. .+...+.-....+-|-.+
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~-~~L~~~ev~~L~~F~~~rl---~D~~--------~~~~~l~gl~~L~~~~~~ 73 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPP-DFLSRQEVQVLLDFFCSRL---DDHA--------CVQPALKGLLALVKMKNF 73 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCH-hhccHHHHHHHHHHHHHHh---ccHh--------hHHHHHHHHHHHHhCcCC
Confidence 567889999999999999999984444 4488899999999999865 4422 222233333333334444
Q ss_pred CchHHHHHHHHHHHHhhc-CCChhcHHHHHHHHHHHHhccc----ccccHHHHHHHHHhhcCCCch----HHHHHHHHHH
Q 001247 143 ECDELVNEMYSTFFAVAS-DDHPESVLSSMQTIMIVLLEES----EDIQEDLLVILLSALGRNKND----TARRLAMNVI 213 (1115)
Q Consensus 143 ~~~~li~~lF~~~~~~v~-~~~~~~v~~~m~~Il~~vI~e~----~~i~~~~ld~il~~~~~~~~~----~a~~la~~v~ 213 (1115)
+ .+....+.+.+|+-+. ..++.+.+...-.|+..+++.. ..+..+.+.-++..+..+|-. -++++...++
T Consensus 74 ~-~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 74 S-PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred C-hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3 2335555555554343 3467777777777777777653 346778888777766554433 7888888887
Q ss_pred HHhhhhhhHHHHHHHHHhhc------CCCCCCCCcchHHHHHHHHHhh---CchhhhhhhhhhhccccCCchHHHHHHHH
Q 001247 214 EQCAGKLEAGIKQFLVSSMS------GDSRPGHSHIDYHEVIYDVYRC---SPQILSGVVPYLTGELLTDQLDTRLKAVG 284 (1115)
Q Consensus 214 ~~~~~~l~~~i~~~~~~~l~------~~~~~~~~~~~~h~li~el~~~---~P~lL~~Vip~Le~eL~se~~~~R~~At~ 284 (1115)
..-. +.+....+|.-+.. ........++..-+|-..|..+ .|..-.-++|.|-++|.|+...++..+.+
T Consensus 153 ~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 153 QEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred Hhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 7765 46677777754321 1111111234444555555444 67776779999999999999999999999
Q ss_pred HHHHhhcCCCCC-hhhhcHHHHHHH
Q 001247 285 LVGDLFAVPGSA-NNEQFHSVFSEF 308 (1115)
Q Consensus 285 ~lg~m~s~~~~~-~~~~~~~~~~~f 308 (1115)
++..++..-|.. +.....++|++.
T Consensus 231 tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 231 TLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999876644 344457778754
No 25
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.62 E-value=0.45 Score=58.21 Aligned_cols=158 Identities=21% Similarity=0.286 Sum_probs=104.8
Q ss_pred hhhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCC
Q 001247 217 AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1115)
Q Consensus 217 ~~~l~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~ 296 (1115)
+|++-..+..|++++-.-+. . -+ ++...+-.|=--..|.+-.+|-...+++.++....+.-
T Consensus 59 ~dRIl~fla~fv~sl~q~d~-----e---~D-----------lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei 119 (892)
T KOG2025|consen 59 PDRILSFLARFVESLPQLDK-----E---ED-----------LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI 119 (892)
T ss_pred HHHHHHHHHHHHHhhhccCc-----h---hh-----------HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc
Confidence 46666677778877532221 0 11 22222222333355789999999999999998743211
Q ss_pred hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHH-cCCchhHHHHHHHHHHHHhhhhhcC
Q 001247 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR-LLDFDENVRKQVVAVICDVACHALN 375 (1115)
Q Consensus 297 ~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~r-L~D~DekVR~aaV~~i~~la~~~l~ 375 (1115)
=-.-|.-+-...+.|..|+.|.||++.|.+... +.-.|. ++.-++.+.+..- -+||.+.||.+|.-.|.
T Consensus 120 dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsr-lQ~d~~-dee~~v~n~l~~liqnDpS~EVRRaaLsnI~-------- 189 (892)
T KOG2025|consen 120 DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSR-LQGDPK-DEECPVVNLLKDLIQNDPSDEVRRAALSNIS-------- 189 (892)
T ss_pred CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HhcCCC-CCcccHHHHHHHHHhcCCcHHHHHHHHHhhc--------
Confidence 123344555688999999999999999999876 332332 3344566655554 38999999999665443
Q ss_pred CCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 001247 376 SIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1115)
Q Consensus 376 ~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L 404 (1115)
++.+++-.+.||.||=+..+|+-+-..+
T Consensus 190 -vdnsTlp~IveRarDV~~anRrlvY~r~ 217 (892)
T KOG2025|consen 190 -VDNSTLPCIVERARDVSGANRRLVYERC 217 (892)
T ss_pred -cCcccchhHHHHhhhhhHHHHHHHHHHh
Confidence 4556677789999999999998764433
No 26
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=3.4 Score=50.60 Aligned_cols=217 Identities=18% Similarity=0.189 Sum_probs=138.8
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHH--
Q 001247 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS-- 322 (1115)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~-- 322 (1115)
+.+++..+|+- ++|..++|.|.+.|.+|+=.+|-.++=.+|-|--+=-.-|...-|.+.--++.-..||.|-||..
T Consensus 378 aLDVLanvf~~--elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 378 ALDVLANVFGD--ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHHhhHH--HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 46677666653 67777999999999999999999999999977654212244455888888899999999999963
Q ss_pred --HHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-cCCCCH--HHHHH---HHHhhccCCh
Q 001247 323 --VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPV--ETVKL---VAERLRDKSV 394 (1115)
Q Consensus 323 --~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~-l~~v~~--~~l~~---l~eR~rDKk~ 394 (1115)
.-++++.++.-+++ .--..++.+|.+|++|..-+|--|||.++..+.... -+.||. .+|.+ ....-.-|+.
T Consensus 456 WTLsRys~wv~~~~~~-~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRD-EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred eeHhhhhhhHhcCChH-hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcce
Confidence 23555555544332 223578889999999999999999999999886644 445553 22222 2233344556
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhh--hhhccCCCc-------hhHHHHhhhcCCCCCCCHHHHH
Q 001247 395 LVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILR--CLYDKDFGS-------DTIESVLCGSLFPTGFSVKDRV 465 (1115)
Q Consensus 395 ~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~il~--~~y~~d~~~-------~~ve~vl~e~LlP~~~~~~~R~ 465 (1115)
.|==.||-+||.--.++..+.. -.+. -||--|=. ..-+.|++. ..|-..+-+.++|+--++=+|.
T Consensus 535 lILYDAIgtlAdsvg~~Ln~~~----Yiqi--LmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc 608 (885)
T KOG2023|consen 535 LILYDAIGTLADSVGHALNKPA----YIQI--LMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRC 608 (885)
T ss_pred ehHHHHHHHHHHHHHHhcCcHH----HHHH--hccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHH
Confidence 6666788888776665443211 0000 01211111 111223220 1456666777888876776675
Q ss_pred HHHHH
Q 001247 466 RHWVR 470 (1115)
Q Consensus 466 ~~ll~ 470 (1115)
-++++
T Consensus 609 ~~il~ 613 (885)
T KOG2023|consen 609 FRILQ 613 (885)
T ss_pred HHHHH
Confidence 55553
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=95.34 E-value=5.6 Score=55.69 Aligned_cols=374 Identities=16% Similarity=0.116 Sum_probs=181.4
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCC---ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHH
Q 001247 315 RIVAVRMSVLEHVKSCLLTDPSRA---DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAE 387 (1115)
Q Consensus 315 ~s~~VR~~~v~~~~~il~~~~~~~---~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~----~v~~~~l~~l~e 387 (1115)
.+.+++...+.+...+...+.+.- .....++.|.+.|...++.+|..++.+++-++..+-+ .+....+..|.+
T Consensus 416 ~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~ 495 (2102)
T PLN03200 416 ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQ 495 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 447899998888877554333210 0012457888888889999999999999887653221 122334567778
Q ss_pred hhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHHH
Q 001247 388 RLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH 467 (1115)
Q Consensus 388 R~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~ 467 (1115)
.++..+..+|++|...|+++=... .. .......-|-||. +++..-..+.+ ..+ .=+..
T Consensus 496 LL~s~~~~iqeeAawAL~NLa~~~-~q---ir~iV~~aGAIpp-LV~LL~sgd~~--~q~---------------~Aa~A 553 (2102)
T PLN03200 496 LLETGSQKAKEDSATVLWNLCCHS-ED---IRACVESAGAVPA-LLWLLKNGGPK--GQE---------------IAAKT 553 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCc-HH---HHHHHHHCCCHHH-HHHHHhCCCHH--HHH---------------HHHHH
Confidence 888889999999999998875420 00 0011122355664 55554222211 000 01122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhh
Q 001247 468 WVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLK 547 (1115)
Q Consensus 468 ll~l~~~lD~~~~ka~~~il~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~ 547 (1115)
+.++..+-|.... ..++++. . .+++.++...-.++..+...-.......+. . -
T Consensus 554 L~nLi~~~d~~~I-----------------~~Lv~LL---l-sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g----~--~ 606 (2102)
T PLN03200 554 LTKLVRTADAATI-----------------SQLTALL---L-GDLPESKVHVLDVLGHVLSVASLEDLVREG----S--A 606 (2102)
T ss_pred HHHHHhccchhHH-----------------HHHHHHh---c-CCChhHHHHHHHHHHHHHhhcchhHHHHHh----h--h
Confidence 2233222222211 1222221 1 122222222211222221111110000000 0 0
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhhHH
Q 001247 548 DANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQS 627 (1115)
Q Consensus 548 D~r~~~llk~~~~~~s~~~~~~~a~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~ 627 (1115)
+..-...|-.+...+++ ..-..|. ..+-.+-..+ .+... .++....|+-|+..+... +.....+.
T Consensus 607 ~~ggL~~Lv~LL~sgs~-~ikk~Aa-~iLsnL~a~~--~d~~~--------avv~agaIpPLV~LLss~---~~~v~keA 671 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKE-ETQEKAA-SVLADIFSSR--QDLCE--------SLATDEIINPCIKLLTNN---TEAVATQS 671 (2102)
T ss_pred ccccHHHHHHHHcCCCH-HHHHHHH-HHHHHHhcCC--hHHHH--------HHHHcCCHHHHHHHHhcC---ChHHHHHH
Confidence 00111222222222211 0001111 1111111111 01111 134445688888866532 11122334
Q ss_pred HHHHHHHHHhhCCc--Cc---cccHHHHHHHHhhccccchHhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHH
Q 001247 628 CMDILGILARFSPL--LL---GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQ 702 (1115)
Q Consensus 628 a~~LL~~iS~~~P~--lf---~~~~~~L~~~l~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la~~Gtp~~ 702 (1115)
|..|.+..+...+. .. .+.+..|+++|...+..+++.++.+|+++.+.-...-.......++.|.++-.+|+++.
T Consensus 672 A~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~ 751 (2102)
T PLN03200 672 ARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEG 751 (2102)
T ss_pred HHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHH
Confidence 44444443322222 11 34579999999998877889999999988654211111123456899999999999999
Q ss_pred HHHHHHHHHhhcCCCccch-H------HHHHHHHHHhhhhcC--CCch--HHHHHHHHHhh
Q 001247 703 AKYAVHALAAITKDDGLKS-L------SVLYKRLVDMLEEKT--HLPA--VLQSLGCIAQT 752 (1115)
Q Consensus 703 AK~Av~~L~~~~~~~~~~~-~------~~l~~~l~~~l~~~~--~~~~--~L~sLa~ia~~ 752 (1115)
=++|+.+|..++....... + .-.+..+++.|+..+ +..+ .|..|+-+++.
T Consensus 752 k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 752 KRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 9999999977765432110 1 012344555554222 3333 56666766664
No 28
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.19 E-value=14 Score=47.31 Aligned_cols=544 Identities=17% Similarity=0.157 Sum_probs=268.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhcC-CCCCCCCcc--h-HHHHHHHHHhhCchhhhhhhhhhhccccCC--c--
Q 001247 204 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSG-DSRPGHSHI--D-YHEVIYDVYRCSPQILSGVVPYLTGELLTD--Q-- 275 (1115)
Q Consensus 204 ~a~~la~~v~~~~~~~l~~~i~~~~~~~l~~-~~~~~~~~~--~-~h~li~el~~~~P~lL~~Vip~Le~eL~se--~-- 275 (1115)
..+.+-..+++...+-+.+++-..+.++++. .+.++.+.. . .--+..-|-.+.|+...+-+|-|-.-+.+- |
T Consensus 454 ~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f 533 (1233)
T KOG1824|consen 454 GCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF 533 (1233)
T ss_pred hHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch
Confidence 6788888888888888888777666666542 111122111 2 223444455667777776666554433211 1
Q ss_pred hHHHHHHHHHHHHhhcC-----C--CCChhhhcHHHHHHHHhcc--cCCChhHHHHHHHHhHHHHhcCCC--CCChHHHH
Q 001247 276 LDTRLKAVGLVGDLFAV-----P--GSANNEQFHSVFSEFLKRL--TDRIVAVRMSVLEHVKSCLLTDPS--RADAPQIL 344 (1115)
Q Consensus 276 ~~~R~~At~~lg~m~s~-----~--~~~~~~~~~~~~~~fL~R~--~D~s~~VR~~~v~~~~~il~~~~~--~~~~~~l~ 344 (1115)
-.+--.|..+.+++... + +.++.......+.+-+.|+ +|.+-+||...+.+.++++.+-.+ +.+-..++
T Consensus 534 yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L 613 (1233)
T KOG1824|consen 534 YKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTL 613 (1233)
T ss_pred HhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 22222333333333321 1 2344555677888888875 799999999999999998876543 23445677
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCc
Q 001247 345 TALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 420 (1115)
Q Consensus 345 ~~l~~rL~D~DekVR~aaV~~i~~la~~~l~----~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~ 420 (1115)
..+.+|+. .|--|+.||+|++.++...++ .+-.+.+..++.=+|--....|.++...+-++-..|...+ +..
T Consensus 614 ~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~--~~~ 689 (1233)
T KOG1824|consen 614 PILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSI--PAE 689 (1233)
T ss_pred HHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cHH
Confidence 88889986 688899999999999875543 3445678888887776667788887777777777763221 111
Q ss_pred c-hhhcccchHHHhhhhhccCCCchhHHHHhhhcC--CCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHH
Q 001247 421 N-QNEFEWIPGKILRCLYDKDFGSDTIESVLCGSL--FPTGFSVKDRVRHWVRIFS-----GFDRIEMKALEKILEQKQR 492 (1115)
Q Consensus 421 ~-~~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~L--lP~~~~~~~R~~~ll~l~~-----~lD~~~~ka~~~il~~k~~ 492 (1115)
. ..-++.||+-|- ..|++....--.+..++ .|...-.+-+-..+-++.+ .+-..+..++..++..-..
T Consensus 690 ~~e~vL~el~~Lis----esdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~ 765 (1233)
T KOG1824|consen 690 LLEAVLVELPPLIS----ESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVI 765 (1233)
T ss_pred HHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHh
Confidence 1 112344444332 22322111111111111 1111001111111111111 1111111221111111111
Q ss_pred HHHH---HHHHHHHHhh-h--c--CCCcHHHHHHHHHHHHHHhhhcCCchhHH--HHHHHHH--hhhhH-HHHHHHHHH-
Q 001247 493 LQQE---MQRYLSLRQM-H--Q--DGDAPEIQKKILFCFRVMSRSFAEPAKAE--ENFLILD--QLKDA-NVWKILMNL- 558 (1115)
Q Consensus 493 ~~~~---~~~~l~~~~~-~--~--~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~--~~l~kf~--~l~D~-r~~~llk~~- 558 (1115)
-+.. +-..+.+... . + ++-....--.+.++++.|+..+|+..++. .-.+.|. +.+|+ |+|-+|..=
T Consensus 766 t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGE 845 (1233)
T KOG1824|consen 766 TKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGE 845 (1233)
T ss_pred cCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhh
Confidence 0000 1111222111 0 0 01112222347788889999999655542 2334444 23443 333333211
Q ss_pred hccCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccc--hhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHH
Q 001247 559 LDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFN--KEHVKEILLEVAAQKSSANAQFMQSCMDILGILA 636 (1115)
Q Consensus 559 ~~~~s~~~~~~~a~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n--~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS 636 (1115)
++...+..-...-..-+++-++++ ..|..+.--|-.+.+-.+ ..-+|.+++.+... ... .----+.+...|+
T Consensus 846 lgr~~~~s~~~e~~~~iieaf~sp--~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sq--pk~--QyLLLhSlkevi~ 919 (1233)
T KOG1824|consen 846 LGRRKDLSPQNELKDTIIEAFNSP--SEDVKSAASYALGSLAVGNLPKYLPFILEQIESQ--PKR--QYLLLHSLKEVIV 919 (1233)
T ss_pred hccCCCCCcchhhHHHHHHHcCCC--hHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcc--hHh--HHHHHHHHHHHHH
Confidence 111111000000001122222322 234444444444444442 23467777765432 111 1112356777899
Q ss_pred hhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHH---HHHHHHHHHhh
Q 001247 637 RFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQ---AKYAVHALAAI 713 (1115)
Q Consensus 637 ~~~P~lf~~~~~~L~~~l~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la~~Gtp~~---AK~Av~~L~~~ 713 (1115)
...+..|++.++..-.+|...-+..-++.=-+++.|-|.+- -...+++.+.|+..-..|.|.. +=-|+|.. +
T Consensus 920 ~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~---l~epesLlpkL~~~~~S~a~~~rs~vvsavKfs--i 994 (1233)
T KOG1824|consen 920 SASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV---LIEPESLLPKLKLLLRSEASNTRSSVVSAVKFS--I 994 (1233)
T ss_pred HhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH---hCChHHHHHHHHHHhcCCCcchhhhhhheeeee--e
Confidence 99999999999999999887544333444444555544321 1234578999999888877633 22233321 2
Q ss_pred cCCCccchHHHHHH-HHHHhh---hhcC-CC-chHHHHHHHHHhhcccccccchHHHHHHH
Q 001247 714 TKDDGLKSLSVLYK-RLVDML---EEKT-HL-PAVLQSLGCIAQTAMPVFETRESEIEEFI 768 (1115)
Q Consensus 714 ~~~~~~~~~~~l~~-~l~~~l---~~~~-~~-~~~L~sLa~ia~~~p~~f~~~~~~I~~fi 768 (1115)
++.... +..+.+ .|-+.+ .+.+ +. ...|+++...+.+-|....+--+++.-.+
T Consensus 995 sd~p~~--id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~L 1053 (1233)
T KOG1824|consen 995 SDQPQP--IDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLL 1053 (1233)
T ss_pred cCCCCc--cCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHH
Confidence 222221 112222 222222 2222 11 23567777777777766655444444333
No 29
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=6 Score=49.50 Aligned_cols=373 Identities=13% Similarity=0.079 Sum_probs=194.2
Q ss_pred hhhhhhhccccCCchHHHHHHH-HHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 001247 262 GVVPYLTGELLTDQLDTRLKAV-GLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At-~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~ 340 (1115)
+.+|.+..+|.+.-...|..|+ ++++.|--++ +...-+|+.-++ ..=.+.+.-.-+=.+....-..+|. .+
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~--DvSslF~dvvk~----~~T~dlelKKlvyLYl~nYa~~~P~--~a 84 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGK--DVSSLFPDVVKC----MQTRDLELKKLVYLYLMNYAKGKPD--LA 84 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccCc--chHhhhHHHHhh----cccCCchHHHHHHHHHHHhhccCch--HH
Confidence 4556666666666556666665 4667776653 455545554444 4444456555555565555556675 34
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCc
Q 001247 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 420 (1115)
Q Consensus 341 ~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~ 420 (1115)
...++.+.+-.-|+++.+|.-|+...+ +-....+.+-...-+..-.+|+.+-||+.|..+++++|.....-..
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~---~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~---- 157 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMG---CLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE---- 157 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhcee---eEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc----
Confidence 456788888899999999998777655 3334444555667788888999999999999999999986322111
Q ss_pred chhhcccchHHHhhhhhccCCCc-----hhHHHHhhhc--CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001247 421 NQNEFEWIPGKILRCLYDKDFGS-----DTIESVLCGS--LFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRL 493 (1115)
Q Consensus 421 ~~~~~~wIP~~il~~~y~~d~~~-----~~ve~vl~e~--LlP~~~~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~~ 493 (1115)
-..+++.+=.++.+.++.. ..+..+.... -.+... ...+..+++....-+++=+ -..+
T Consensus 158 ----~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l-~~~~~~~lL~al~ec~EW~---qi~I------- 222 (734)
T KOG1061|consen 158 ----DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLEL-NPQLINKLLEALNECTEWG---QIFI------- 222 (734)
T ss_pred ----ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccc-cHHHHHHHHHHHHHhhhhh---HHHH-------
Confidence 1233344333333222220 0111111111 011111 1234444444333333311 0111
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCch-----hHHHHHHHHHhhhhHHHHHHHHHH-------hc-
Q 001247 494 QQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPA-----KAEENFLILDQLKDANVWKILMNL-------LD- 560 (1115)
Q Consensus 494 ~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~-----ka~~~l~kf~~l~D~r~~~llk~~-------~~- 560 (1115)
++.+..+.-.++.+...- ++.++..++-.. -+...+..+.+..+...-.+++.. ++
T Consensus 223 -------L~~l~~y~p~d~~ea~~i----~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~ 291 (734)
T KOG1061|consen 223 -------LDCLAEYVPKDSREAEDI----CERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS 291 (734)
T ss_pred -------HHHHHhcCCCCchhHHHH----HHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecc
Confidence 111111211122122211 222221111111 112222222222111111111111 11
Q ss_pred -cCCCHHHHHHHHHHHHHHhc---CCC-c----hH--HHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhhHHHH
Q 001247 561 -SNTSFDQAFTGRDDLLKILG---AKH-R----LY--DFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCM 629 (1115)
Q Consensus 561 -~~s~~~~~~~a~~ellkkl~---~~~-~----~~--~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~ 629 (1115)
++..|-.++|+.--+.++-+ .+. . .. -+++..-..+-..+.|.+++..++..+..............+.
T Consensus 292 ~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaI 371 (734)
T KOG1061|consen 292 ESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAV 371 (734)
T ss_pred cchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHH
Confidence 23345555555433333311 000 0 00 1455555667777889999999988776544444444566777
Q ss_pred HHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhhcch
Q 001247 630 DILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTI 676 (1115)
Q Consensus 630 ~LL~~iS~~~P~lf~~~~~~L~~~l~~~~~~~~~~~L~~L~~~~~~~ 676 (1115)
+-+-.++...++. .++++.|.++++-+-+.++.++..++..+...+
T Consensus 372 raig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRky 417 (734)
T KOG1061|consen 372 RAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKY 417 (734)
T ss_pred HHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcC
Confidence 7788888888888 788999999999655556777788887776543
No 30
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.10 E-value=5.2 Score=50.70 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=98.7
Q ss_pred ccCCchHHHHHHHH-HHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHH
Q 001247 271 LLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1115)
Q Consensus 271 L~se~~~~R~~At~-~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~ 349 (1115)
|.+.+...|+.|.+ ++..|..+. ++..=+|++-+.|..| +++++.-+=-+...+-..+|. +.-..++.+.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--dmssLf~dViK~~~tr----d~ElKrL~ylYl~~yak~~P~--~~lLavNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--DMSSLFPDVIKNVATR----DVELKRLLYLYLERYAKLKPE--LALLAVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHh
Confidence 66777777877775 667777754 5777888888888843 567777666666555566773 44466789999
Q ss_pred HcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 350 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 350 rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
=+.|+++.+|..|+...+.+-.. .+-+-++..+.+-+-|+.+-||+.|+-+++++|+.
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 99999999999988887744332 33445678889999999999999999999999974
No 31
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.98 E-value=0.066 Score=50.55 Aligned_cols=67 Identities=19% Similarity=0.161 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 340 APQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 340 ~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v---~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
.++|++.+..++.|+|.+||..||+++..++...-..+ =.+++..+..++.|-...||.-| ..|-++
T Consensus 25 l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 35788889999999999999999999999886443332 23578889999999999999887 555444
No 32
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=15 Score=46.10 Aligned_cols=162 Identities=14% Similarity=0.045 Sum_probs=117.9
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHH
Q 001247 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1115)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v 324 (1115)
.|--+.+-.+-.|++=+--|-.+.--|...|.-+|--|.+++..|= +..--|-.-.+--+-..|.+|-||....
T Consensus 91 VyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA 164 (968)
T KOG1060|consen 91 VYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAA 164 (968)
T ss_pred HHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 3555666677789998888899999999999999999999987542 3333466777777888999999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 001247 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1115)
Q Consensus 325 ~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L 404 (1115)
-+++.+..-.|+ .-.++++.+...|.|.+..|=-+||.++.++....++.+-.. .+.+..-+.|=.-==....|..|
T Consensus 165 ~AIpKLYsLd~e--~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkn-yrklC~ll~dvdeWgQvvlI~mL 241 (968)
T KOG1060|consen 165 HAIPKLYSLDPE--QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKN-YRKLCRLLPDVDEWGQVVLINML 241 (968)
T ss_pred HhhHHHhcCChh--hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHH-HHHHHhhccchhhhhHHHHHHHH
Confidence 999998876665 334899999999999999999999999998877777655443 12222222222211123456666
Q ss_pred HHHHHHhhhhc
Q 001247 405 ADIFRGCCLRN 415 (1115)
Q Consensus 405 ~~ly~~~~~~~ 415 (1115)
.+.-+++..+.
T Consensus 242 ~RYAR~~l~~P 252 (968)
T KOG1060|consen 242 TRYARHQLPDP 252 (968)
T ss_pred HHHHHhcCCCc
Confidence 66655555443
No 33
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=2.4 Score=51.98 Aligned_cols=102 Identities=25% Similarity=0.172 Sum_probs=82.3
Q ss_pred hhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhc-HHHHHHHHhcc-----cCCChhHHHHHHHHhHHHHhcCCCC
Q 001247 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF-HSVFSEFLKRL-----TDRIVAVRMSVLEHVKSCLLTDPSR 337 (1115)
Q Consensus 264 ip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~-~~~~~~fL~R~-----~D~s~~VR~~~v~~~~~il~~~~~~ 337 (1115)
--.++.-|.++-+.+|.-||..+.+.++. |+.-- |.+-...|++. .|.+++||+..++..+.++.+-.++
T Consensus 222 f~~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh 297 (1005)
T KOG1949|consen 222 FEELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSH 297 (1005)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccch
Confidence 33566667788999999999999999984 55544 44566777775 4678899999999999988765555
Q ss_pred CChHHHHHHHHHHcCCchhHHHHHHHHHHHHh
Q 001247 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDV 369 (1115)
Q Consensus 338 ~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~l 369 (1115)
..-..++++|.--|+|.-|+||.|+|..+..+
T Consensus 298 ~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 298 PLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred hHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 55678899999999999999999999887654
No 34
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=94.67 E-value=15 Score=45.20 Aligned_cols=143 Identities=19% Similarity=0.179 Sum_probs=93.6
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCC-ChhHHHHHHHHhHHHHhcCCCCCCh-
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLLTDPSRADA- 340 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~-s~~VR~~~v~~~~~il~~~~~~~~~- 340 (1115)
++|.+-.-|..+|..+-..|.++|.++.+.+. .+..-+++.-..=|...... +..||.-+.+.+..+-..+++....
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 56666677888999999999999999998653 33222222224444444455 6689999999998877665542111
Q ss_pred --HHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh--cCCC-CHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 001247 341 --PQILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSI-PVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1115)
Q Consensus 341 --~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~--l~~v-~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ 406 (1115)
+.+++.+...|.|.|.-||+.+++.+.+++... ...+ ...++..+...+.+-+..-|-.++-..|.
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence 237778888899999999999999999998722 2222 22355556666555554334334443333
No 35
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.67 E-value=9 Score=47.57 Aligned_cols=298 Identities=15% Similarity=0.214 Sum_probs=155.6
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccC
Q 001247 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1115)
Q Consensus 63 ~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl 142 (1115)
..|.....-||..+|.||+-+.-. -.||.-+++..||+.+-+-.+.=. + +.....|..+.. . +-+
T Consensus 560 ~gl~De~qkVR~itAlalsalaea---a~Pygie~fDsVlkpLwkgir~hr---g---k~laafLkAigy---l--ipl- 624 (1172)
T KOG0213|consen 560 HGLKDEQQKVRTITALALSALAEA---ATPYGIEQFDSVLKPLWKGIRQHR---G---KELAAFLKAIGY---L--IPL- 624 (1172)
T ss_pred HhhcccchhhhhHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHcc---C---hHHHHHHHHHhh---c--ccc-
Confidence 344455566999999999988763 368999999999998866443211 1 111222222221 1 111
Q ss_pred CchHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCC----chHHHHHHHHHHHHhhh
Q 001247 143 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK----NDTARRLAMNVIEQCAG 218 (1115)
Q Consensus 143 ~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~i~~~~ld~il~~~~~~~----~~~a~~la~~v~~~~~~ 218 (1115)
+..-+...| -..+|.-+|-|..+-..+.-+++|.-+++.- .+++|.= .|
T Consensus 625 -----md~eya~yy--------------Trevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r--------~d 677 (1172)
T KOG0213|consen 625 -----MDAEYASYY--------------TREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIR--------FD 677 (1172)
T ss_pred -----ccHHHHHHh--------------HHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHh--------hh
Confidence 111111122 1345556666665544454445554443211 1144421 12
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh--CchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCC
Q 001247 219 KLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1115)
Q Consensus 219 ~l~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~--~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~ 296 (1115)
.+...+..|-+-=+.+|.. .-...-+.-.+|..- +-..+.- +-.+|.+|.++.|..+.+++.++++..|..
T Consensus 678 ilp~ff~~fw~rrmA~drr---~ykqlv~ttv~ia~KvG~~~~v~R----~v~~lkde~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 678 ILPEFFFSFWGRRMALDRR---NYKQLVDTTVEIAAKVGSDPIVSR----VVLDLKDEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred hhHHHHhhhhhhhhhcccc---chhhHHHHHHHHHHHhCchHHHHH----HhhhhccccHHHHHHHHHHHHHHHhccccc
Confidence 2333333333322222210 000112222222221 2223333 346788899999999999999999876522
Q ss_pred -h----------------------------------------hhhc-HHHHHHHHhcccCCChhHHHHHHHHhHHHHh--
Q 001247 297 -N----------------------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-- 332 (1115)
Q Consensus 297 -~----------------------------------------~~~~-~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~-- 332 (1115)
+ ++.| |.+-..-|.|.+.+++.||..-.+.++.+..
T Consensus 751 diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vl 830 (1172)
T KOG0213|consen 751 DIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVL 830 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 0 1222 6677777889999999999987776665431
Q ss_pred cCCC----------------CC---------------------------ChHHHHHHHHHHcCCchhHHHHHHHHHHHHh
Q 001247 333 TDPS----------------RA---------------------------DAPQILTALCDRLLDFDENVRKQVVAVICDV 369 (1115)
Q Consensus 333 ~~~~----------------~~---------------------------~~~~l~~~l~~rL~D~DekVR~aaV~~i~~l 369 (1115)
.... ++ -+++|+..|.--|..-++||-...|.-++.+
T Consensus 831 ktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~I 910 (1172)
T KOG0213|consen 831 KTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTI 910 (1172)
T ss_pred HhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHH
Confidence 1110 00 1122223333334555666666666666666
Q ss_pred hhhhcCCCCHH-HHH---HHHHhhccCChhHHHHHHHHHHHHHH
Q 001247 370 ACHALNSIPVE-TVK---LVAERLRDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 370 a~~~l~~v~~~-~l~---~l~eR~rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
+-...+.||.. -++ .|.|-++--|.++|+.|.+++|-+=+
T Consensus 911 adrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 911 ADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred HhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 66666666653 122 33444555556666666666665544
No 36
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=0.55 Score=57.03 Aligned_cols=182 Identities=19% Similarity=0.183 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHhcccc--cccHHHHHHHHHhhcCCC---chHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCC
Q 001247 167 VLSSMQTIMIVLLEESE--DIQEDLLVILLSALGRNK---NDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHS 241 (1115)
Q Consensus 167 v~~~m~~Il~~vI~e~~--~i~~~~ld~il~~~~~~~---~~~a~~la~~v~~~~~~~l~~~i~~~~~~~l~~~~~~~~~ 241 (1115)
+.+....|+++.|-..+ .-.+++|..+..-+..+. .+.|+.--.+||+..++.+..-+. +
T Consensus 105 lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~---~------------ 169 (885)
T KOG2023|consen 105 LIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVL---T------------ 169 (885)
T ss_pred HHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcc---c------------
Confidence 44444444444443323 356788888887775432 237888788889888776554332 0
Q ss_pred cchHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHH
Q 001247 242 HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRM 321 (1115)
Q Consensus 242 ~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~ 321 (1115)
+. |--.||-+=.-.++..+.+|..|+..+-..+-.....+...-..--....-+.+|.+|+||.
T Consensus 170 --rp--------------l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk 233 (885)
T KOG2023|consen 170 --RP--------------LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRK 233 (885)
T ss_pred --Cc--------------hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 00 11123333344567899999999999998876654333322222223444567999999999
Q ss_pred HHHHHhHHHHhcCCCC--CChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHH
Q 001247 322 SVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV 382 (1115)
Q Consensus 322 ~~v~~~~~il~~~~~~--~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l 382 (1115)
....+...+|.-+|++ .-...|++++..+-.|+||.|-++||+---.+|... ++.+++
T Consensus 234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp---i~~~~L 293 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP---ICKEVL 293 (885)
T ss_pred HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc---CcHHHH
Confidence 9999999988888763 123589999999999999999999999877666544 555554
No 37
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.52 E-value=13 Score=44.50 Aligned_cols=316 Identities=15% Similarity=0.202 Sum_probs=172.6
Q ss_pred HHHHHHHhcchhhhcCC---CcchHHHHHHHHHHHHhhcCCCCCCCch--HHHH-HHHHHHHhccCCCCCCCCChhhHHH
Q 001247 52 MQPFLNAIVQPVLLKHQ---DKDVKLLVATCICEITRITAPEAPYSDD--VLKD-IFQLIVGTFSGLKDTGGPSFGRRVV 125 (1115)
Q Consensus 52 l~~~~~~L~~~~lL~h~---d~~Vr~~~acCl~dilRi~APdaPy~~~--~lkd-if~l~~~~~~~L~d~~~~~~~~~~~ 125 (1115)
++.+...|.++--..++ +.+.-..+.-||..++.-..-+.++.+. ..++ +...+++..-.-.+.++. ....
T Consensus 36 ~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~---~~~~ 112 (415)
T PF12460_consen 36 LETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD---LDDR 112 (415)
T ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc---cchH
Confidence 33444444444332222 3444444555566665555444434432 2232 444444433222222222 4566
Q ss_pred HHHHHHhhhh-hhhhccCC-chHHHHHHHHHHHHh-----hcC------CChhcHHHHHHHHHHHHhccccccc--HHHH
Q 001247 126 ILETLAKYRS-CVVMLDLE-CDELVNEMYSTFFAV-----ASD------DHPESVLSSMQTIMIVLLEESEDIQ--EDLL 190 (1115)
Q Consensus 126 lLe~la~vks-~vl~~dl~-~~~li~~lF~~~~~~-----v~~------~~~~~v~~~m~~Il~~vI~e~~~i~--~~~l 190 (1115)
+|+.++.+=. ++-.++.+ .++++.++|+.|+.. ... ..+.........++..+=-+. .+| .+++
T Consensus 113 ~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~-~~~~~~~ll 191 (415)
T PF12460_consen 113 VLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDV-SLPDLEELL 191 (415)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCccc-CccCHHHHH
Confidence 7777776533 33445555 578899999999811 000 123334444444444332222 233 2345
Q ss_pred HHHHHhhcCCCch----HHHHHHHHHHHHh--hhhhhHHHHHHHHHhhcCCCCCCCCcchHHH--------HHHHHHhhC
Q 001247 191 VILLSALGRNKND----TARRLAMNVIEQC--AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHE--------VIYDVYRCS 256 (1115)
Q Consensus 191 d~il~~~~~~~~~----~a~~la~~v~~~~--~~~l~~~i~~~~~~~l~~~~~~~~~~~~~h~--------li~el~~~~ 256 (1115)
+-++.-....... ++.++..-++|++ .+.+...+...+... .............+ ++.+-+..+
T Consensus 192 ~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 192 QSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSI--SSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhh--cccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 5444433222222 5556777788884 444666666666554 11111111122222 222222223
Q ss_pred chhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcC-CC-------CCh-----hhhcHHHHHHHHhcccCCChhHHHHH
Q 001247 257 PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV-PG-------SAN-----NEQFHSVFSEFLKRLTDRIVAVRMSV 323 (1115)
Q Consensus 257 P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~-~~-------~~~-----~~~~~~~~~~fL~R~~D~s~~VR~~~ 323 (1115)
.+++...+.. |.+ .++...|.+.+|-++++ ++ ++. =+-|-.+....+..+.+.+..+|...
T Consensus 270 ~~~~~~L~~l----L~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~y 343 (415)
T PF12460_consen 270 TELLDKLLEL----LSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNY 343 (415)
T ss_pred HHHHHHHHHH----hCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHH
Confidence 3334333333 322 77899999999999998 32 110 12345556667888888888899999
Q ss_pred HHHhHHHHhcCCCC---CChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCH
Q 001247 324 LEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV 379 (1115)
Q Consensus 324 v~~~~~il~~~~~~---~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~ 379 (1115)
+.+...++.+-|.. .+.+++++-|.+.|-=+|..||.++..++..+.......+.+
T Consensus 344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 99999999877752 345678888888887788889999999998877766444444
No 38
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.49 E-value=8.2 Score=46.77 Aligned_cols=251 Identities=17% Similarity=0.162 Sum_probs=144.9
Q ss_pred hccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 001247 268 TGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1115)
Q Consensus 268 e~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l 347 (1115)
=--+.+.+..+|....+.++.+.-.-+.-=-.-|..+-....+|.-|..+.||.+.|.+....= .-+.++...+.+.|
T Consensus 97 lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q--e~~~neen~~~n~l 174 (885)
T COG5218 97 LRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ--EMELNEENRIVNLL 174 (885)
T ss_pred HhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccCChHHHHHHHH
Confidence 3345678999999999999987654331012234556667889999999999999999876532 22233444555544
Q ss_pred HHH-cCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcc
Q 001247 348 CDR-LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFE 426 (1115)
Q Consensus 348 ~~r-L~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~ 426 (1115)
..- -+||.+.||.+|.--|. ++..+.-.+.||.||=....|+- +|.+..+++++ -++.
T Consensus 175 ~~~vqnDPS~EVRr~allni~---------vdnsT~p~IlERarDv~~anRr~-------vY~r~Lp~iGd-----~~~l 233 (885)
T COG5218 175 KDIVQNDPSDEVRRLALLNIS---------VDNSTYPCILERARDVSGANRRM-------VYERCLPRIGD-----LKSL 233 (885)
T ss_pred HHHHhcCcHHHHHHHHHHHee---------eCCCcchhHHHHhhhhhHHHHHH-------HHHHHhhhhcc-----hhhc
Confidence 443 48999999999654332 45556667899999998888874 46665555432 2344
Q ss_pred cchHHHhhhhh-ccC--CC--chhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001247 427 WIPGKILRCLY-DKD--FG--SDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYL 501 (1115)
Q Consensus 427 wIP~~il~~~y-~~d--~~--~~~ve~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~~~~~~~~~l 501 (1115)
.|--+|+-.=+ -+| +. ...+|.+....+.|.+.+ ++.+...+|-...+. +-.++..++
T Consensus 234 si~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~-------lveLle~lDvSr~sv----------~v~aik~~F 296 (885)
T COG5218 234 SIDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLR-------LVELLEFLDVSRRSV----------LVAAIKGVF 296 (885)
T ss_pred cccceehhhhhcchhhhhhHHHHHHHHHHHHhccccccc-------HHHHHHHHhhhhHHH----------HHHHHHHHH
Confidence 44444442111 233 21 236777777777776533 344444444332221 112222222
Q ss_pred HHHhhhc------C---CC-cHH---HHH-----HHHHHHHHHhhhcCCchhHHHHHHHHHhhhhHHHHHHHHHH
Q 001247 502 SLRQMHQ------D---GD-APE---IQK-----KILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNL 558 (1115)
Q Consensus 502 ~~~~~~~------~---~~-~~~---~~~-----kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r~~~llk~~ 558 (1115)
+.+-..- + .| .++ ..+ =+++-|.-+-.-||+..+-.+.+..+..+.++..|.-+-++
T Consensus 297 ~~R~D~ls~~eFPe~~w~d~T~E~tfL~rt~~lyCldnNitell~~fPe~~~L~~~~~hyvslry~sSYnt~cfi 371 (885)
T COG5218 297 EKRPDVLSEKEFPEYLWSDPTEENTFLSRTELLYCLDNNITELLGRFPESLALPDLESHYVSLRYRSSYNTLCFI 371 (885)
T ss_pred hhccccchhhhcHHHHhhCchHHHHHHHHHHHHHHHhccHHHHHhhchhhhcchHHHhhheeeeeccccchhHHH
Confidence 2211000 0 00 000 000 01122334445599999999988888888888755554444
No 39
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.44 E-value=20 Score=50.58 Aligned_cols=111 Identities=23% Similarity=0.229 Sum_probs=68.7
Q ss_pred chhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhCC--cCc------cccHHHHHHHHhhccccc--hHhHHHHHHH
Q 001247 602 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSP--LLL------GGTEEELVNLLKEENEII--KEGILHVLAK 671 (1115)
Q Consensus 602 n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P--~lf------~~~~~~L~~~l~~~~~~~--~~~~L~~L~~ 671 (1115)
+-..|+.|++.+... +. .....|-..|..+.+.+| ++| .+.+..|+++|...|... +..+|.+|+.
T Consensus 733 ~~~~I~~Lv~lLr~G-~~---~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~ 808 (2102)
T PLN03200 733 AEDIILPLTRVLREG-TL---EGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALAL 808 (2102)
T ss_pred hcCcHHHHHHHHHhC-Ch---HHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 445588888866532 22 223456677888888888 333 445789999999865433 3347888775
Q ss_pred hhcc-----h----HhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCC
Q 001247 672 AGGT-----I----REQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 717 (1115)
Q Consensus 672 ~~~~-----~----~~~~~~~~~~l~~~L~~la~~Gtp~~AK~Av~~L~~~~~~~ 717 (1115)
.++. + ..-+.+..+++.+..+-+ -.|.|.-.--|+.+|..++++.
T Consensus 809 l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 809 LARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred HHhhcccCCCCCCchhhHHhccCchHHHHHHH-HcCChHHHHHHHHHHHHHhccC
Confidence 5432 0 011122233344433445 7799988899999999998764
No 40
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.33 E-value=0.47 Score=54.15 Aligned_cols=98 Identities=18% Similarity=0.243 Sum_probs=76.8
Q ss_pred cccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC-----------C
Q 001247 270 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-----------A 338 (1115)
Q Consensus 270 eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~-----------~ 338 (1115)
-+++++..+|..|++.+| +++--+-+++.+|=.++..-+.+ | +++||+..++.+-+++..|+.. .
T Consensus 35 ~v~~~~~~vR~~al~cLG-l~~Lld~~~a~~~l~l~~~~~~~--~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~ 110 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLG-LCCLLDKELAKEHLPLFLQALQK--D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESV 110 (298)
T ss_pred HhcCCCHHHHHHHHHHHH-HHHHhChHHHHHHHHHHHHHHHh--C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccc
Confidence 356789999999999999 55544557787776666655533 5 9999999999999999987421 1
Q ss_pred ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001247 339 DAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1115)
Q Consensus 339 ~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1115)
....+.+.+.+-+.+.+++||..||+++|.+-.
T Consensus 111 ~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 111 DSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 234688888888988899999999999997654
No 41
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.30 E-value=0.34 Score=52.74 Aligned_cols=103 Identities=18% Similarity=0.106 Sum_probs=66.8
Q ss_pred hhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHH-HHHHHhcccCCChhHHHHHHHHhHHHHhcCCC--C---
Q 001247 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--R--- 337 (1115)
Q Consensus 264 ip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~-~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~--~--- 337 (1115)
+|.|=..+...+..+|..|.+++-.|+..-+ -++.+ ......-.++++|.||..++++...++...+. .
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 3444444555677788888888888886422 12444 44555567888889999888888888877761 1
Q ss_pred C--ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001247 338 A--DAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1115)
Q Consensus 338 ~--~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1115)
. ....+.+.+.+.+.|++..||.+|-+++..+..
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1 124688999999999999999999888886643
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.28 E-value=0.067 Score=51.14 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=25.7
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcC
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAV 292 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~ 292 (1115)
++|.|-.-|...+..+|..|..+++.|...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~ 37 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAG 37 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcC
Confidence 667777777888899999999999998876
No 43
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.05 E-value=0.075 Score=39.01 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001247 343 ILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1115)
Q Consensus 343 l~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1115)
|++.+.+.+.|++++||.+|+.++++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 45677788889999999999998887754
No 44
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.94 E-value=0.55 Score=49.40 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=63.6
Q ss_pred HHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHh
Q 001247 248 VIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHV 327 (1115)
Q Consensus 248 li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~ 327 (1115)
.+-.|..-.|+++-+.+|.+..-|+.+++.+|..|...+.+++.. ++.+-.+.++..++.-..|.++.||.....+.
T Consensus 11 ~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~ 87 (178)
T PF12717_consen 11 ALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVDENPEIRSLARSFF 87 (178)
T ss_pred HHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcCCCHHHHHHHHHHH
Confidence 344455667888888888888888888888888888888888865 46666677778888888888888888877777
Q ss_pred HHHHhc
Q 001247 328 KSCLLT 333 (1115)
Q Consensus 328 ~~il~~ 333 (1115)
..+...
T Consensus 88 ~e~~~~ 93 (178)
T PF12717_consen 88 SELLKK 93 (178)
T ss_pred HHHHHh
Confidence 776665
No 45
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.22 E-value=0.055 Score=45.09 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=33.7
Q ss_pred hhHHHHHHHHhHHHHhcCCC--CCChHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 001247 317 VAVRMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1115)
Q Consensus 317 ~~VR~~~v~~~~~il~~~~~--~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~ 368 (1115)
|.||...+...+.+....+. .....++++.|...|.|+++.||.+|+.+++.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46777777777663332221 01234677788888888888888888777664
No 46
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=11 Score=46.63 Aligned_cols=211 Identities=16% Similarity=0.147 Sum_probs=134.3
Q ss_pred hhhhccccCCchHHHHHHHHHHHHhhcCCCCChhh-----hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhc----CC
Q 001247 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-----QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT----DP 335 (1115)
Q Consensus 265 p~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~-----~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~----~~ 335 (1115)
|-|.--|++.|-.+|..|..++-+.|--.+.+... --..-|....+=..|--|.||...++..-.+... -|
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 66778899999999999999999999766655421 1122344455566899999999999887765532 24
Q ss_pred CCCChHHHHHHHH-HHcCCchhHHHHHHHHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 001247 336 SRADAPQILTALC-DRLLDFDENVRKQVVAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1115)
Q Consensus 336 ~~~~~~~l~~~l~-~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~-~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~ 413 (1115)
.. ...++++.+. +.-.|+--.||.++++.+-.++.....+---+ .|..|..-+-|+..+||..+...|.++=++-.-
T Consensus 257 ~~-i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~ 335 (1005)
T KOG1949|consen 257 PT-ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAA 335 (1005)
T ss_pred HH-HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhh
Confidence 32 2345554433 44689999999999999988776554443333 467888889999999999999999998776322
Q ss_pred hccCCCcchhhcccchHHHhhhhhccCCCc--hhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001247 414 RNFNGSINQNEFEWIPGKILRCLYDKDFGS--DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKI 486 (1115)
Q Consensus 414 ~~~~~~~~~~~~~wIP~~il~~~y~~d~~~--~~ve~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~ka~~~i 486 (1115)
+ -+.-||--.+-.--..|.+. ..+-+.++...+|..-+.+..-.|-.++. +.+..+-..|.++
T Consensus 336 ~---------f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tlv-~~n~~A~~rf~~~ 400 (1005)
T KOG1949|consen 336 K---------FWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTLV-QMNHAAARRFYQY 400 (1005)
T ss_pred h---------hhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH-ccCHHHHHHHHHH
Confidence 1 22334443332222344321 23444556677887665544333333332 2344433334433
No 47
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.96 E-value=3.2 Score=53.92 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=108.7
Q ss_pred chHHHHHHHHHhh---Cc--hhhhhhhhhhhccc----cCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhccc
Q 001247 243 IDYHEVIYDVYRC---SP--QILSGVVPYLTGEL----LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT 313 (1115)
Q Consensus 243 ~~~h~li~el~~~---~P--~lL~~Vip~Le~eL----~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~ 313 (1115)
.+.+++|..+.+- .| .+|....|.++.-- ...|+.++..||-.+|+|.-- ++.|-..|-+++-.-+.+
T Consensus 895 Dd~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~fces~l~llftimek-- 971 (1251)
T KOG0414|consen 895 DDLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAEFCESHLPLLFTIMEK-- 971 (1251)
T ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhc--
Confidence 3466666655432 33 56666777776654 355799999999999999865 345655554444444443
Q ss_pred CCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCC
Q 001247 314 DRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS 393 (1115)
Q Consensus 314 D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk 393 (1115)
-.+|-||.-+|=.++++...-|. ......+.|-.||+|.+..||..|+.++.-+.-...-.|-+ .+..++--+-|-.
T Consensus 972 sp~p~IRsN~VvalgDlav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKG-ql~eMA~cl~D~~ 1048 (1251)
T KOG0414|consen 972 SPSPRIRSNLVVALGDLAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKG-QLSEMALCLEDPN 1048 (1251)
T ss_pred CCCceeeecchheccchhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcc-cHHHHHHHhcCCc
Confidence 35789999999999998887775 34477889999999999999999999998876655433322 2446677788888
Q ss_pred hhHHHHHH
Q 001247 394 VLVKRYTM 401 (1115)
Q Consensus 394 ~~VR~~Ai 401 (1115)
..||.-|=
T Consensus 1049 ~~IsdlAk 1056 (1251)
T KOG0414|consen 1049 AEISDLAK 1056 (1251)
T ss_pred HHHHHHHH
Confidence 87665543
No 48
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.26 E-value=0.27 Score=63.22 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=79.3
Q ss_pred HHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHH-HHH
Q 001247 307 EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV-KLV 385 (1115)
Q Consensus 307 ~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l-~~l 385 (1115)
.|+-|+.|+.|.||+.|++..+..+.+-|+.-....-+++++=.|.|-...||+..++++..+-...-..-..+++ .-.
T Consensus 291 VFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRF 370 (1048)
T KOG2011|consen 291 VFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRF 370 (1048)
T ss_pred eeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 6889999999999999999999888877864333467899999999999999999999998876653222222221 222
Q ss_pred HHh-----hccCChhHHHHHHHHHHHHHHH
Q 001247 386 AER-----LRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 386 ~eR-----~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
.+| .||-..+||..++..+-..+..
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~~~~ 400 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLLSSS 400 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHhcc
Confidence 222 5888999999999888777654
No 49
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.14 E-value=0.12 Score=42.93 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhhhhhc---CCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 356 ENVRKQVVAVICDVACHAL---NSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 356 ekVR~aaV~~i~~la~~~l---~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
+.||.+|+.+++.++.... ...-.+++..|...++|.+..||..|...||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4799999999997664332 223446788999999999999999999999875
No 50
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.95 E-value=1.3 Score=41.48 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=70.2
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCC-CCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHH
Q 001247 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP-SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1115)
Q Consensus 302 ~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~-~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~ 380 (1115)
.++++.+++-.+|..++||..-+....+.+.++. .......++..+..-|.|+|.=|=+.||++++.++... |.+
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~----p~~ 77 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH----PDE 77 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC----hHH
Confidence 3678999999999999999999999999887766 33345678888999999999999999999999888765 334
Q ss_pred HHHHHHHhhccC
Q 001247 381 TVKLVAERLRDK 392 (1115)
Q Consensus 381 ~l~~l~eR~rDK 392 (1115)
++..+.++-.|+
T Consensus 78 vl~~L~~~y~~~ 89 (92)
T PF10363_consen 78 VLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHhCc
Confidence 555555555544
No 51
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.91 E-value=8.3 Score=44.04 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=74.2
Q ss_pred HHHHHHHhc-ccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-c---CCC
Q 001247 303 SVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-L---NSI 377 (1115)
Q Consensus 303 ~~~~~fL~R-~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~-l---~~v 377 (1115)
++++.++-. ..-.++.||..-+++.+-+-.-+. ..+.+-+.-+...+...++.||..|++++.++.... . ..-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 677777632 233457999999999986444333 334555555555554449999999999999997532 2 222
Q ss_pred C--------HHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 378 P--------VETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 378 ~--------~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
+ ..+++.+.+-+.+-...||..|.+++++|.-.
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 2 24667777777777889999999999998875
No 52
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=91.53 E-value=36 Score=41.46 Aligned_cols=325 Identities=12% Similarity=0.132 Sum_probs=179.6
Q ss_pred HHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCChhhHHHH-HHHHHhhhhhhhhccCCchHHHHHHHHHHHH
Q 001247 79 CICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVI-LETLAKYRSCVVMLDLECDELVNEMYSTFFA 157 (1115)
Q Consensus 79 Cl~dilRi~APdaPy~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~~l-Le~la~vks~vl~~dl~~~~li~~lF~~~~~ 157 (1115)
-|+.++|+.+----|...+.+.+|--+.+-|.+ .++|..|++|+ ++-++.+- +|.+.-.=...=+
T Consensus 44 lls~l~yll~tge~f~e~~at~lff~i~KlFQh----kd~~Lrq~VY~aIkelS~~t----------edvlm~tssiMkD 109 (898)
T COG5240 44 LLSNLFYLLSTGELFPEATATNLFFAILKLFQH----KDLYLRQCVYSAIKELSKLT----------EDVLMGTSSIMKD 109 (898)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHhhcc----------hhhhHHHHHHHHh
Confidence 367888988888888888888888777777754 67889999886 45555432 2222111111111
Q ss_pred hhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHh-hcC---CCchHHHHHHHHHHHHhhhhhhH---HHHHHHHH
Q 001247 158 VASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSA-LGR---NKNDTARRLAMNVIEQCAGKLEA---GIKQFLVS 230 (1115)
Q Consensus 158 ~v~~~~~~~v~~~m~~Il~~vI~e~~~i~~~~ld~il~~-~~~---~~~~~a~~la~~v~~~~~~~l~~---~i~~~~~~ 230 (1115)
+.++-+..+...-..-|..||++... +. ..-+|.+ +.. ....+|-..|-.+.-.+-+...+ ..+....+
T Consensus 110 -~~~g~~~~~kp~AiRsL~~Vid~~tv-~~--~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~ 185 (898)
T COG5240 110 -LNGGVPDDVKPMAIRSLFSVIDGETV-YD--FERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLD 185 (898)
T ss_pred -hccCCccccccHHHHHHHHhcCcchh-hh--HHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhh
Confidence 23334445555555666666666322 11 1222322 111 11112222222222111121111 11222222
Q ss_pred hh-----cCC-C-CCCCCcc---hHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhh
Q 001247 231 SM-----SGD-S-RPGHSHI---DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQ 300 (1115)
Q Consensus 231 ~l-----~~~-~-~~~~~~~---~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~ 300 (1115)
.- .|. + .|....+ .+.-++|++-+..--.++..+..+-..+...|-.--..-++.+..++-. .+++..+
T Consensus 186 l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~-n~q~~~q 264 (898)
T COG5240 186 LKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE-NSQALLQ 264 (898)
T ss_pred HhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHh-ChHHHHH
Confidence 11 111 1 1222222 3456899999987777777766666666544544444555555666655 4577888
Q ss_pred cHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHH
Q 001247 301 FHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1115)
Q Consensus 301 ~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~ 380 (1115)
.....+.||+-.-| .|-++..+..-.+-..|-..+.....+..|+.-|.-+.---|.+|...+.++|...++.|+.-
T Consensus 265 ~rpfL~~wls~k~e---mV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 265 LRPFLNSWLSDKFE---MVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHhcCcch---hhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 88889999964443 444444433333222232223455778899999999999999999999999999888876542
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhh
Q 001247 381 TVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILR 434 (1115)
Q Consensus 381 ~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~il~ 434 (1115)
- ..+-..+-|-+..+--.||++|-+-=. .......+..||+-+=.
T Consensus 342 N-~evEsLIsd~Nr~IstyAITtLLKTGt--------~e~idrLv~~I~sfvhD 386 (898)
T COG5240 342 N-KEVESLISDENRTISTYAITTLLKTGT--------EETIDRLVNLIPSFVHD 386 (898)
T ss_pred C-hhHHHHhhcccccchHHHHHHHHHcCc--------hhhHHHHHHHHHHHHHh
Confidence 1 123455677777777778877654211 11222345777775543
No 53
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.51 E-value=0.94 Score=55.22 Aligned_cols=104 Identities=19% Similarity=0.254 Sum_probs=78.0
Q ss_pred HHhcccCCChhHHHHHHHHhHHHHhcCCC---C-----CChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCC--
Q 001247 308 FLKRLTDRIVAVRMSVLEHVKSCLLTDPS---R-----ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI-- 377 (1115)
Q Consensus 308 fL~R~~D~s~~VR~~~v~~~~~il~~~~~---~-----~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v-- 377 (1115)
|..=..--+-..|..+++.+++++..--. . ....++++-|.+||.|+-.-+|-.|++++..+--.+...+
T Consensus 304 ~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~ 383 (1128)
T COG5098 304 FDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGR 383 (1128)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccch
Confidence 33333445667899999999998753211 1 1235788999999999999999999988776533222222
Q ss_pred CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 378 PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 378 ~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
-.++.+.++.|+-||..-||+.|++.++++.-.+
T Consensus 384 r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 384 RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 3468899999999999999999999999987765
No 54
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.27 E-value=15 Score=48.06 Aligned_cols=256 Identities=15% Similarity=0.137 Sum_probs=148.9
Q ss_pred CCchHHHHHHHHHHHHhhcCC--------ChhcHHHHHHHHHHHHhccccc----ccHHHHHHHHHhhc---CC------
Q 001247 142 LECDELVNEMYSTFFAVASDD--------HPESVLSSMQTIMIVLLEESED----IQEDLLVILLSALG---RN------ 200 (1115)
Q Consensus 142 l~~~~li~~lF~~~~~~v~~~--------~~~~v~~~m~~Il~~vI~e~~~----i~~~~ld~il~~~~---~~------ 200 (1115)
.+..+.+..|-+.|..--+++ .-+++...+...+...|.++.. ...-+.|-+++-+. ..
T Consensus 138 ~ds~~i~~~~~e~~~e~es~DYpl~~~g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fR 217 (1048)
T KOG2011|consen 138 VDSSSITLSMTELFDERESGDYPLTSKGPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFR 217 (1048)
T ss_pred ccchHHHHHHHHHHhhhhhccCcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHH
Confidence 446788999999988843332 2356889999999999988755 33444555555431 11
Q ss_pred --CchHHHHHHHHHHHHhhhhhh-HHHHHHHHHhhcCCCCCCCCc-c-h-------HHHHHHHHHhhCchhhhhhhhhhh
Q 001247 201 --KNDTARRLAMNVIEQCAGKLE-AGIKQFLVSSMSGDSRPGHSH-I-D-------YHEVIYDVYRCSPQILSGVVPYLT 268 (1115)
Q Consensus 201 --~~~~a~~la~~v~~~~~~~l~-~~i~~~~~~~l~~~~~~~~~~-~-~-------~h~li~el~~~~P~lL~~Vip~Le 268 (1115)
.+-.|.++-..+|...-.-.+ ....+=--+.=..+ ...... + . .++-+-+|-.+.-++.-+| +-
T Consensus 218 hTaTl~~mklmt~Lv~va~~Ls~~~~~tskQleaEr~k-~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sV---FV 293 (1048)
T KOG2011|consen 218 HTATLAAMKLMTALVSVALNLSSHNDKTSKQLEAERNK-SRGNRARLESLLMLRKETQEQQDEIESMINDIFDSV---FV 293 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhe---ee
Confidence 112566666666655433222 11110000000001 111110 0 1 1222222222222222222 22
Q ss_pred ccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHH--HHHhc----ccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 001247 269 GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS--EFLKR----LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1115)
Q Consensus 269 ~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~--~fL~R----~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~ 342 (1115)
+--+.-++.+|...++-+|-- ++.||+.|- .||+= .+|+..+||..+++....+..+.....-...
T Consensus 294 HRYRDV~~~IRaiCiqeLgiW--------i~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~l 365 (1048)
T KOG2011|consen 294 HRYRDVDPDIRAICIQELGIW--------IKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLEL 365 (1048)
T ss_pred eecccCchHHHHHHHHHHHHH--------HHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHH
Confidence 334456789999999999954 456676654 34432 5899999999999999997776322222234
Q ss_pred HHHHHHHH-----cCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH-HHHHh
Q 001247 343 ILTALCDR-----LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD-IFRGC 411 (1115)
Q Consensus 343 l~~~l~~r-----L~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~-ly~~~ 411 (1115)
...-++.| ..|.+.-||.......- .......++.+-+..|.+.|=|-++.||+.|+..|-. ++..+
T Consensus 366 FtsRFK~RIVeMadrd~~~~Vrav~L~~~~--~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~ 438 (1048)
T KOG2011|consen 366 FTSRFKDRIVEMADRDRNVSVRAVGLVLCL--LLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERV 438 (1048)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHH--HHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhccc
Confidence 45544444 47788888876554322 3445667888888899999999999999999887754 34333
No 55
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.15 E-value=0.37 Score=45.94 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=69.6
Q ss_pred ccCCChhHHHHHHHHhHHHHhcCCCC--C-ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHH
Q 001247 312 LTDRIVAVRMSVLEHVKSCLLTDPSR--A-DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKL 384 (1115)
Q Consensus 312 ~~D~s~~VR~~~v~~~~~il~~~~~~--~-~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~----~v~~~~l~~ 384 (1115)
..|.++.+|...+.....+-...|.. . ....+++.+.+.+.|+|++||..++.+++.++..... .+...++..
T Consensus 16 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~ 95 (120)
T cd00020 16 LSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPK 95 (120)
T ss_pred HHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHH
Confidence 34555788888888777755443321 0 0125677888889999999999999999998764321 122235778
Q ss_pred HHHhhccCChhHHHHHHHHHHHH
Q 001247 385 VAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 385 l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
+.+.+.+.+..||+.|+..|+++
T Consensus 96 l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 96 LVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999876
No 56
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.10 E-value=0.44 Score=57.83 Aligned_cols=97 Identities=26% Similarity=0.291 Sum_probs=82.6
Q ss_pred HHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHH
Q 001247 306 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLV 385 (1115)
Q Consensus 306 ~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l 385 (1115)
.+|+--+.|-=-+||.+.|.....+-.++|.. +..-++.|.+.++|-.+.||+.++.++..++.. -.+.++.+..+
T Consensus 376 GA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--l~i~eeql~~i 451 (823)
T KOG2259|consen 376 GALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--LAIREEQLRQI 451 (823)
T ss_pred ceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--heecHHHHHHH
Confidence 56677777777899999999999988888875 447889999999999999999999999887776 56788899999
Q ss_pred HHhhccCChhHHHHHHHHHHH
Q 001247 386 AERLRDKSVLVKRYTMERLAD 406 (1115)
Q Consensus 386 ~eR~rDKk~~VR~~Ai~~L~~ 406 (1115)
.+-+.|..+.||...-..|+.
T Consensus 452 l~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 452 LESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999887776654
No 57
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=90.90 E-value=9.3 Score=47.02 Aligned_cols=213 Identities=17% Similarity=0.183 Sum_probs=125.1
Q ss_pred cCCchHHHHHHHHHHH--HhhcC----CChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 001247 141 DLECDELVNEMYSTFF--AVASD----DHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIE 214 (1115)
Q Consensus 141 dl~~~~li~~lF~~~~--~~v~~----~~~~~v~~~m~~Il~~vI~e~~~i~~~~ld~il~~~~~~~~~~a~~la~~v~~ 214 (1115)
++|..+++..||..|+ .+..+ --+..+..-+..+|.--+... ..+++++.+++..+....+
T Consensus 267 ~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa-~~~~~~~~i~~~~l~~~~~------------ 333 (501)
T PF13001_consen 267 SLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA-TSFPNILQIVFDGLYSDNT------------ 333 (501)
T ss_pred CCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH-hCCccHHHHHhccccCCcc------------
Confidence 3556678888888888 32111 123445555555555433322 3455666666665533211
Q ss_pred HhhhhhhHHHHHHH---HHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhh----ccccCCchHHHHHHHHHHH
Q 001247 215 QCAGKLEAGIKQFL---VSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLT----GELLTDQLDTRLKAVGLVG 287 (1115)
Q Consensus 215 ~~~~~l~~~i~~~~---~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le----~eL~se~~~~R~~At~~lg 287 (1115)
..|++..--+|+ ..++.. -=...+-...|.++...+|.++ ....+++...|..|=+++|
T Consensus 334 --~~klk~~~l~F~~~~~~~~~~------------~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 334 --NSKLKSLALQFIRGSSWIFKH------------ISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred --ccccchhcchhhhcchHHhhh------------cCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 123333333333 111110 0011223566777777888884 3466789999999999999
Q ss_pred HhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCC-----hHHHH-HHHHHHcCCchhHHHHH
Q 001247 288 DLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-----APQIL-TALCDRLLDFDENVRKQ 361 (1115)
Q Consensus 288 ~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~-----~~~l~-~~l~~rL~D~DekVR~a 361 (1115)
.+..... .+....-++-.-+.....+-.++||...-++...++.+-+.... ..... ..+.....+....+|.+
T Consensus 400 ~L~~~~p-~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~ 478 (501)
T PF13001_consen 400 LLAKRAP-SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYA 478 (501)
T ss_pred HHHccCc-ccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHH
Confidence 9887654 33444455555566666888999999999998887654332111 11112 23333445777789999
Q ss_pred HHHHHHHhhhhhcCCCCHHHHH
Q 001247 362 VVAVICDVACHALNSIPVETVK 383 (1115)
Q Consensus 362 aV~~i~~la~~~l~~v~~~~l~ 383 (1115)
||+-.. ++..+++++...+.
T Consensus 479 avk~an--~~fpf~d~~aR~i~ 498 (501)
T PF13001_consen 479 AVKYAN--ACFPFSDVPARYIC 498 (501)
T ss_pred HHHHHH--HhCCccchHHHHHH
Confidence 999777 57788888776553
No 58
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=90.81 E-value=0.53 Score=44.49 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHHHcCCchh
Q 001247 279 RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDE 356 (1115)
Q Consensus 279 R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~--~~~~~l~~~l~~rL~D~De 356 (1115)
|..+.-.|+..--+-+.......+.+-.--|.-+.|.++.||....|+..+|....... .--.+|.++|.+.+.|+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 55555555555333344455666778888899999999999999999999987654321 1125889999999999999
Q ss_pred HHHHHH
Q 001247 357 NVRKQV 362 (1115)
Q Consensus 357 kVR~aa 362 (1115)
.||.+|
T Consensus 83 ~Vr~~a 88 (97)
T PF12755_consen 83 NVRSAA 88 (97)
T ss_pred hHHHHH
Confidence 999985
No 59
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.77 E-value=30 Score=46.65 Aligned_cols=316 Identities=14% Similarity=0.190 Sum_probs=151.3
Q ss_pred cCCCcchHHHHHHHH--HHHHhhcCCCCCCCc--hHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhcc
Q 001247 66 KHQDKDVKLLVATCI--CEITRITAPEAPYSD--DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLD 141 (1115)
Q Consensus 66 ~h~d~~Vr~~~acCl--~dilRi~APdaPy~~--~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~d 141 (1115)
+=.+++-|+--|||+ +|++|= .|+++ +.+.+++.-.++....+++. --.-..-....|+ |.||-+||
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g----~~~~~~~e~lpelw~~~fRvmDDIKEs---VR~aa~~~~~~ls--Kl~vr~~d 1117 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQG----RPFDQVKEKLPELWEAAFRVMDDIKES---VREAADKAARALS--KLCVRICD 1117 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHhhhcc
Confidence 448899899889986 599994 67776 56888777777765444331 1111122333333 34666777
Q ss_pred CC----chHHHHHH--------------------HHHHHHhhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhh
Q 001247 142 LE----CDELVNEM--------------------YSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSAL 197 (1115)
Q Consensus 142 l~----~~~li~~l--------------------F~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~i~~~~ld~il~~~ 197 (1115)
.. +.+.+.-+ ..+..+++ +.-++.+..+..+..-.+++-.+.+.+.||..+--..
T Consensus 1118 ~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~-Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1118 VTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLA-KSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred cCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHH-HhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence 53 12222111 12222222 1123334445555555555555555555555443222
Q ss_pred c----------------------------------------------------CCCchHHHHHHHHHHHHhhhhhhHHHH
Q 001247 198 G----------------------------------------------------RNKNDTARRLAMNVIEQCAGKLEAGIK 225 (1115)
Q Consensus 198 ~----------------------------------------------------~~~~~~a~~la~~v~~~~~~~l~~~i~ 225 (1115)
. -+.+..+..+-..+..+|..-|.|+.-
T Consensus 1197 ~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sg 1276 (1702)
T KOG0915|consen 1197 INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSG 1276 (1702)
T ss_pred hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchh
Confidence 0 000113344444444555555555555
Q ss_pred HHHHHhhcCCCCCCCCcchHH-HHHHHHHhh-CchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHH
Q 001247 226 QFLVSSMSGDSRPGHSHIDYH-EVIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHS 303 (1115)
Q Consensus 226 ~~~~~~l~~~~~~~~~~~~~h-~li~el~~~-~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~ 303 (1115)
.+|+-.+.|-........+++ .-.--|.++ .|+=-...+-.+-.++..++++.+..+..++.+ |+....+..+.|.+
T Consensus 1277 Kll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~e~Lkn~as 1355 (1702)
T KOG0915|consen 1277 KLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQEMLKNYAS 1355 (1702)
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhHHHHHhhHH
Confidence 555554443211111111110 111112222 443444444444445555555656667777666 55443334444444
Q ss_pred HHH--HHHhcccCCChhHHHHHHHHhHHHHhcCCCCC--ChHHHHHHHHHH-cCCchhHHHHHHHHHHHHhhhhhcCCCC
Q 001247 304 VFS--EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA--DAPQILTALCDR-LLDFDENVRKQVVAVICDVACHALNSIP 378 (1115)
Q Consensus 304 ~~~--~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~--~~~~l~~~l~~r-L~D~DekVR~aaV~~i~~la~~~l~~v~ 378 (1115)
..- .||.++.+ .-+.=-.|-+.=..+....-.+- ...+++..+++. +.+.-.++|..+.+++..++......+|
T Consensus 1356 aILPLiFLa~~ee-~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~ 1434 (1702)
T KOG0915|consen 1356 AILPLIFLAMHEE-EKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAP 1434 (1702)
T ss_pred HHHHHHHHHHhHH-HHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCC
Confidence 333 45555544 11111112111111111000000 113555555555 4555599999999999988887777777
Q ss_pred HHH--------HHHHHHhhccCC
Q 001247 379 VET--------VKLVAERLRDKS 393 (1115)
Q Consensus 379 ~~~--------l~~l~eR~rDKk 393 (1115)
.+. +.++..|+-|=|
T Consensus 1435 ~p~ilkl~~~ll~~L~GRiwdGK 1457 (1702)
T KOG0915|consen 1435 IPVILKLALSLLDTLNGRIWDGK 1457 (1702)
T ss_pred hHHHHHHHHHHHHHhhccccccH
Confidence 543 346666665544
No 60
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=90.56 E-value=0.33 Score=38.44 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=28.3
Q ss_pred hHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHH
Q 001247 327 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 365 (1115)
Q Consensus 327 ~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~ 365 (1115)
...++...|.....+++.+.+..|+.|++..||.+||..
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 344555566544456788888888888888888888764
No 61
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.72 E-value=83 Score=41.70 Aligned_cols=443 Identities=16% Similarity=0.139 Sum_probs=205.2
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCC--CCC---hhhhcHH-HHHHHHhcccCCChh
Q 001247 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP--GSA---NNEQFHS-VFSEFLKRLTDRIVA 318 (1115)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~--~~~---~~~~~~~-~~~~fL~R~~D~s~~ 318 (1115)
.-..+.++-..+|.+...=+..+-.-|.++.=..|-..++..|.+-.+- +.+ ..++-++ .-..+..|..|+++-
T Consensus 295 v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~ 374 (1251)
T KOG0414|consen 295 VGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAY 374 (1251)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHH
Confidence 4678899999999999999999988999999999999999999987652 111 1122222 334444555555555
Q ss_pred HHHHHHHHhHHHHhcC--CCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhH
Q 001247 319 VRMSVLEHVKSCLLTD--PSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLV 396 (1115)
Q Consensus 319 VR~~~v~~~~~il~~~--~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~V 396 (1115)
||.+.++-...|-.-| |-+ ...+++.....||.|-.--||..|++-+..+- +++|--
T Consensus 375 vRskVLqv~~~l~~~~s~p~~-~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L--------------------~~~Pfs 433 (1251)
T KOG0414|consen 375 VRSKVLQVFRRLFQQHSIPLG-SRTEVLELAIGRLEDKSSLVRKNAIQLLSSLL--------------------DRHPFS 433 (1251)
T ss_pred HHHHHHHHHHHHHHccCCCcc-HHHHHHHHHhcccccccHHHHHHHHHHHHHHH--------------------hcCCch
Confidence 5555555544433222 111 12344444444444444444444444322211 111111
Q ss_pred HHHHHHHHHHHHHHhhhhccC--CCcchhhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCCCCHHHH-HH-HHHHHH
Q 001247 397 KRYTMERLADIFRGCCLRNFN--GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDR-VR-HWVRIF 472 (1115)
Q Consensus 397 R~~Ai~~L~~ly~~~~~~~~~--~~~~~~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R-~~-~ll~l~ 472 (1115)
++.-...+..-|..+....+. ++.....=..+++--..- +..-.. .++..=+..--|.......- .. .+..-.
T Consensus 434 ~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n-~~~vi~--~~~~~~~~~~~q~~ss~~~~~e~~~~~~~~ 510 (1251)
T KOG0414|consen 434 SELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSEN-VKGVIE--DAEKDSTTEKNQLESSDNKQEEHCLLENEV 510 (1251)
T ss_pred hhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhh-ccccee--echhhhhhhccccccccccchhhhhhhhhh
Confidence 222222222223333222210 000000000011100000 000000 00000000011110000000 00 000111
Q ss_pred hcCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhh-
Q 001247 473 SGFDRIE----MKALEKILEQKQRLQQEMQRYLSLRQ-MHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL- 546 (1115)
Q Consensus 473 ~~lD~~~----~ka~~~il~~k~~~~~~~~~~l~~~~-~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l- 546 (1115)
...+..+ .++..+++...-+....|.+-+...- ..-++...+++.-+.-.. .+..| +-.-|+.++++.-.+
T Consensus 511 ~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl~--~c~~F-~I~gae~~irkMl~LV 587 (1251)
T KOG0414|consen 511 ESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFLV--RCKQF-GIDGAEFGIRKMLPLV 587 (1251)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH--HHHHh-CCCcHHHHHHHHhhhh
Confidence 1111111 12223333333333333333333221 112234445555544322 23333 333445566655543
Q ss_pred --hhHHHHHHHHHH-------hccCCCHHHHHHHHHHHHHHhcC-----CCchHHHHHHHHHhhhccccchhHHHHHHHH
Q 001247 547 --KDANVWKILMNL-------LDSNTSFDQAFTGRDDLLKILGA-----KHRLYDFLSTLSMKCSYLLFNKEHVKEILLE 612 (1115)
Q Consensus 547 --~D~r~~~llk~~-------~~~~s~~~~~~~a~~ellkkl~~-----~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~ 612 (1115)
+|..++.++..| .+++..-.+.....+-+++.+-+ ..++-+.+..|+. ---+++..|..|..+
T Consensus 588 Wskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv~---~~~Id~~Vi~~Lw~~ 664 (1251)
T KOG0414|consen 588 WSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIGDLTSLEEVLCELVA---RGYIDAAVINKLWEI 664 (1251)
T ss_pred hCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHh---CCCccHHHHHHHHHH
Confidence 555555544444 34444444432223334444322 2233333444433 456888888999987
Q ss_pred HHhhcccchhhhhHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhhc-chH----hhh---hccc
Q 001247 613 VAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGG-TIR----EQL---AATS 684 (1115)
Q Consensus 613 ~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~~~l~~~~~~~~~~~L~~L~~~~~-~~~----~~~---~~~~ 684 (1115)
....+.+.......-++.+|-++|...|++-..+.+.|+++=-. .+.....+|..++.++- ... ..+ .+..
T Consensus 665 ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~iglg-~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~ 743 (1251)
T KOG0414|consen 665 FTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQIGLG-EPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQE 743 (1251)
T ss_pred HHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHHhccC-cHHHHHHHHHHHHHhhcccccchhhccccccCchH
Confidence 64333222211223467899999999999999998887765332 34455667777775541 111 111 1223
Q ss_pred chHHHHHHHHhhcCCh-------HHHHHHHHHHHhhcCCCc
Q 001247 685 SSVDLLLERLCLEGSR-------RQAKYAVHALAAITKDDG 718 (1115)
Q Consensus 685 ~~l~~~L~~la~~Gtp-------~~AK~Av~~L~~~~~~~~ 718 (1115)
..+..+|+.+-..|-+ .-|..|+.+|..++..++
T Consensus 744 ~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~~Pe 784 (1251)
T KOG0414|consen 744 EVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISMLPE 784 (1251)
T ss_pred HHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhcChH
Confidence 4577888887776422 556778888887776554
No 62
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.49 E-value=2.5 Score=51.66 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=82.1
Q ss_pred ChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC
Q 001247 296 ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1115)
Q Consensus 296 ~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~ 375 (1115)
.....-..+|+....=++|.++.||...++..-. |. + .....+.+.+-..+-+.|.++.||.+||+.+.-.+...+-
T Consensus 191 s~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~-L~-e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 191 SLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLA-LS-E-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred cccccHHHHHHHHHHHhcCCCcchHHHHHHHHHh-hc-c-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCC
Confidence 3444556788887777899999999988887433 11 1 1123345667777789999999999999999877664431
Q ss_pred CC---------CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 376 SI---------PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 376 ~v---------~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
.. -++.+..+.+=+||..+.||.+|.+.||.+=+.
T Consensus 268 ~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 268 PLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 11 224577999999999999999999999876654
No 63
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=89.29 E-value=2.7 Score=50.19 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=25.8
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 001247 346 ALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1115)
Q Consensus 346 ~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ 406 (1115)
.+..-|.|.|..||.+|+.+++.+-.. +.+..+..-+.|....||..|+.+++.
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~~-------~a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPRR-------LSESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccc-------cchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 333344466666666666655543211 111112233556666666666665543
No 64
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.11 E-value=26 Score=44.29 Aligned_cols=165 Identities=18% Similarity=0.244 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhcc-------cccccHHHHHH-HHH---hhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCC
Q 001247 167 VLSSMQTIMIVLLEE-------SEDIQEDLLVI-LLS---ALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGD 235 (1115)
Q Consensus 167 v~~~m~~Il~~vI~e-------~~~i~~~~ld~-il~---~~~~~~~~~a~~la~~v~~~~~~~l~~~i~~~~~~~l~~~ 235 (1115)
+...+..||..+++- ...||...|.+ ||. -++++.. ..+|.|..-+.|.++..=..
T Consensus 220 l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~------------daSd~M~DiLaqvatntdss- 286 (866)
T KOG1062|consen 220 LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA------------DASDLMNDILAQVATNTDSS- 286 (866)
T ss_pred HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc------------cHHHHHHHHHHHHHhccccc-
Confidence 445555666666643 12377777773 332 2345432 33466666666666542111
Q ss_pred CCCCCCcc-hHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCC------------------CC
Q 001247 236 SRPGHSHI-DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG------------------SA 296 (1115)
Q Consensus 236 ~~~~~~~~-~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~------------------~~ 296 (1115)
.+.+. =.||-+..|.-+- .+..+|.+|+..+|+-++.++ .+
T Consensus 287 ---kN~GnAILYE~V~TI~~I~-----------------~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~ 346 (866)
T KOG1062|consen 287 ---KNAGNAILYECVRTIMDIR-----------------SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPT 346 (866)
T ss_pred ---ccchhHHHHHHHHHHHhcc-----------------CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcH
Confidence 11111 1355555554443 345677777777777776653 24
Q ss_pred hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001247 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1115)
Q Consensus 297 ~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1115)
.+++|+.+--+- -.|.+++||....|..-.++..+. ...+++.|.+-|.-.|+.+|...+..|+.++.
T Consensus 347 avqrHr~tIleC---L~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 347 AVQRHRSTILEC---LKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 578888876554 479999999999999877665433 45677777777777788899888888887654
No 65
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=89.10 E-value=2.1 Score=51.10 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=82.8
Q ss_pred hhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHH
Q 001247 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 345 (1115)
Q Consensus 266 ~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~ 345 (1115)
.|-.-|.++++.+|..+...+|..-..+ + .....+|+ |.++.||..-+...+.+= .+ +...
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~~~-------~-~~L~~~L~---d~d~~Vra~A~raLG~l~--~~------~a~~ 181 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRHDP-------G-PALEAALT---HEDALVRAAALRALGELP--RR------LSES 181 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccCh-------H-HHHHHHhc---CCCHHHHHHHHHHHHhhc--cc------cchH
Confidence 3445567889999999999999733221 1 24455554 999999999999998632 11 3455
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHhhhh----------hcCCC--------------CHHHHHHHHHhhccCChhHHHHHH
Q 001247 346 ALCDRLLDFDENVRKQVVAVICDVACH----------ALNSI--------------PVETVKLVAERLRDKSVLVKRYTM 401 (1115)
Q Consensus 346 ~l~~rL~D~DekVR~aaV~~i~~la~~----------~l~~v--------------~~~~l~~l~eR~rDKk~~VR~~Ai 401 (1115)
.|..-+.|.|+.||.+|+.+...+... .-... +.+.+..|.+.++|.. ||..++
T Consensus 182 ~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~ 259 (410)
T TIGR02270 182 TLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREAL 259 (410)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHH
Confidence 566679999999999999887655210 00011 1234445566667754 999999
Q ss_pred HHHHHHHH
Q 001247 402 ERLADIFR 409 (1115)
Q Consensus 402 ~~L~~ly~ 409 (1115)
..||++=.
T Consensus 260 ~AlG~lg~ 267 (410)
T TIGR02270 260 RAVGLVGD 267 (410)
T ss_pred HHHHHcCC
Confidence 99996543
No 66
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.66 E-value=11 Score=47.44 Aligned_cols=135 Identities=19% Similarity=0.159 Sum_probs=91.1
Q ss_pred hHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhh
Q 001247 221 EAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQ 300 (1115)
Q Consensus 221 ~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~ 300 (1115)
+...-.|+.+++.++++ .+-.....+.|..+-+..|+.=..-+-.|.+-. ||-..+..+|+.++.+--. | -...
T Consensus 389 ~~~~m~FL~~~Lr~eGg-~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI--EDce~~~i~~rILhlLG~E-g--P~a~ 462 (865)
T KOG1078|consen 389 HTVMMNFLSNMLREEGG-FEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI--EDCEFTQIAVRILHLLGKE-G--PKAP 462 (865)
T ss_pred HHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH--HhccchHHHHHHHHHHhcc-C--CCCC
Confidence 33455677777766322 122224577777777878876444333333322 4567788999999966543 2 1234
Q ss_pred cHHHHHHH-HhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHH
Q 001247 301 FHSVFSEF-LKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVV 363 (1115)
Q Consensus 301 ~~~~~~~f-L~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV 363 (1115)
.|+-|-.| .+|-.=-+..||.+.|.+...|....+.. .+.|...|+++++|.|+.||-.|-
T Consensus 463 ~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l--~~sI~vllkRc~~D~DdevRdrAt 524 (865)
T KOG1078|consen 463 NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL--LPSILVLLKRCLNDSDDEVRDRAT 524 (865)
T ss_pred CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc--cccHHHHHHHHhcCchHHHHHHHH
Confidence 45555544 47777778999999999999999666542 347888999999999999998753
No 67
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=88.46 E-value=5.5 Score=51.18 Aligned_cols=151 Identities=16% Similarity=0.268 Sum_probs=113.0
Q ss_pred hhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCC--C-------------------Ch-------------h-----
Q 001247 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--S-------------------AN-------------N----- 298 (1115)
Q Consensus 258 ~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~--~-------------------~~-------------~----- 298 (1115)
+++..+-|.++.++.+.+=..|..|++-+...+..++ . |+ +
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 6788899999999999999999999999999998764 1 10 1
Q ss_pred --hhc-HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh-hhc
Q 001247 299 --EQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HAL 374 (1115)
Q Consensus 299 --~~~-~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~-~~l 374 (1115)
..| ...+..+|.|+-|+-+.+|-..++++-.++.+.+ ...+.+.+..-+.+...++|...-..+...-. ...
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 111 4567788999999999999999999988877555 34677777777888888888875444432211 111
Q ss_pred CCCCH----HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 001247 375 NSIPV----ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1115)
Q Consensus 375 ~~v~~----~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~ 412 (1115)
..++. .+...+.-.+.|+...||+.|...++.+++.+-
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 22333 355678889999999999999999999999763
No 68
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=87.98 E-value=5.1 Score=47.41 Aligned_cols=154 Identities=12% Similarity=0.101 Sum_probs=108.1
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcC
Q 001247 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1115)
Q Consensus 273 se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~ 352 (1115)
++++..|..|.+.|++|...+...+...---+-..+|.-..|....|=....+.|-.++.+|.-. .-+.-+..++.
T Consensus 341 ~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~----~~I~~i~~~Il 416 (516)
T KOG2956|consen 341 SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL----QCIVNISPLIL 416 (516)
T ss_pred chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch----hHHHHHhhHHh
Confidence 47999999999999999999877777666777889999999999999888899988888876421 23445556666
Q ss_pred CchhHHHHHHHHHHHHhh----hhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccc
Q 001247 353 DFDENVRKQVVAVICDVA----CHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWI 428 (1115)
Q Consensus 353 D~DekVR~aaV~~i~~la----~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wI 428 (1115)
-.||..=.++++....+. ...+..+=.++.=.+.+=.-.-...|||.|+=+|-.+|+..-. ..-...+...
T Consensus 417 t~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~-----~~mePhL~~L 491 (516)
T KOG2956|consen 417 TADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM-----EEMEPHLEQL 491 (516)
T ss_pred cCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH-----HhhhhHhhhc
Confidence 688988888887655432 2223322223333444444455678999999999999998521 1122445556
Q ss_pred hHHHhhh
Q 001247 429 PGKILRC 435 (1115)
Q Consensus 429 P~~il~~ 435 (1115)
++.-+++
T Consensus 492 t~sk~~L 498 (516)
T KOG2956|consen 492 TSSKLNL 498 (516)
T ss_pred cHHHHHH
Confidence 6655544
No 69
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=87.43 E-value=80 Score=38.68 Aligned_cols=51 Identities=29% Similarity=0.327 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhhc
Q 001247 624 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGG 674 (1115)
Q Consensus 624 ~~~~a~~LL~~iS~~~P~lf~~~~~~L~~~l~~~~~~~~~~~L~~L~~~~~ 674 (1115)
..-+|+++|+.+|..+|+.-..+-.++-+++.+.|-....-++-+|-+.|.
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt 369 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGT 369 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCc
Confidence 445789999999999999999998999889998887666667777766664
No 70
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.20 E-value=95 Score=39.30 Aligned_cols=144 Identities=16% Similarity=0.171 Sum_probs=89.7
Q ss_pred CchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCCh--hHHHH---HHHHhHHH
Q 001247 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIV--AVRMS---VLEHVKSC 330 (1115)
Q Consensus 256 ~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~--~VR~~---~v~~~~~i 330 (1115)
.|+.-...--++...|.+.++..+..|.+.+=.|+.. | ..+|++... +-||.=.+- ++... ..+.+|
T Consensus 14 ~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mln-G----e~~p~Llm~-IiRfvlps~~~elKKLly~ywE~vP-- 85 (948)
T KOG1058|consen 14 SPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLN-G----EDLPSLLMT-IIRFVLPSRNHELKKLLYYYWELVP-- 85 (948)
T ss_pred CCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHc-C----CCchHHHHH-HhheeeccCchHHHHHHHHHHHHcc--
Confidence 3444444445778889999999999999988777765 3 345554443 234432211 11111 111111
Q ss_pred HhcCCCCCChH---HHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 331 LLTDPSRADAP---QILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 331 l~~~~~~~~~~---~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
.+++++.... -+.+++++=|.-|.|=||-.+..-+|.+--..+ =+.++-++..-.--++.=||+.|+-.+..+
T Consensus 86 -Kt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~EL---lepl~p~IracleHrhsYVRrNAilaifsI 161 (948)
T KOG1058|consen 86 -KTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPEL---LEPLMPSIRACLEHRHSYVRRNAILAIFSI 161 (948)
T ss_pred -ccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHH---hhhhHHHHHHHHhCcchhhhhhhheeehhH
Confidence 2333332222 345889999999999999999998886543221 112334455555567889999999999999
Q ss_pred HHHh
Q 001247 408 FRGC 411 (1115)
Q Consensus 408 y~~~ 411 (1115)
|+..
T Consensus 162 yk~~ 165 (948)
T KOG1058|consen 162 YKNF 165 (948)
T ss_pred Hhhh
Confidence 9983
No 71
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.04 E-value=1.2e+02 Score=40.32 Aligned_cols=298 Identities=14% Similarity=0.183 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCc-hHHHHHH
Q 001247 24 DGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSD-DVLKDIF 102 (1115)
Q Consensus 24 ~~Ll~rL~~l~~~L~~~~Q~~~~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~-~~lkdif 102 (1115)
+.|-.|...|..-+..+=...+.....+|..-+.++++ -.|..|+-....-+-|++ .|-+||.+ ++...+|
T Consensus 585 ~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as-----~~~~s~~~~~~~slLdl~---~~~a~~~~e~~vs~l~ 656 (1176)
T KOG1248|consen 585 KILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELAS-----DLDESVASFKTLSLLDLL---IALAPVQTESQVSKLF 656 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhc-----cchhhhhhHHHHHHHHHH---HhhhccccchhHHHHH
Confidence 45555555555555332121112233445555544443 233567777777666664 56777776 5677777
Q ss_pred HHHHHhccCCCCC-CCCChhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcc
Q 001247 103 QLIVGTFSGLKDT-GGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEE 181 (1115)
Q Consensus 103 ~l~~~~~~~L~d~-~~~~~~~~~~lLe~la~vks~vl~~dl~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e 181 (1115)
.-.+..... ++.--++.|-||+.+....++-... ++.+.++|+..++.... -+.-....=..-+..+++.
T Consensus 657 ----~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~----~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~~~ 727 (1176)
T KOG1248|consen 657 ----TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLV----EQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLLKL 727 (1176)
T ss_pred ----HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHH----HHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHh
Confidence 222222222 3345678899999999885554322 46777777777775532 2223334445666666665
Q ss_pred cc-----cccHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhC
Q 001247 182 SE-----DIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCS 256 (1115)
Q Consensus 182 ~~-----~i~~~~ld~il~~~~~~~~~~a~~la~~v~~~~~~~l~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~ 256 (1115)
.+ .+|..+-++||.. +..+..+++.|-+++..-.. ++ ..+..++.+ .
T Consensus 728 ~~~e~~~~i~k~I~EvIL~~--Ke~n~~aR~~Af~lL~~i~~-----i~----~~~d~g~e~-----------------~ 779 (1176)
T KOG1248|consen 728 LSAEHCDLIPKLIPEVILSL--KEVNVKARRNAFALLVFIGA-----IQ----SSLDDGNEP-----------------A 779 (1176)
T ss_pred ccHHHHHHHHHHHHHHHHhc--ccccHHHHhhHHHHHHHHHH-----HH----hhhcccccc-----------------h
Confidence 44 4777777777765 22233444444443332221 22 111111111 3
Q ss_pred chhhhhhhhhhhccccCCchHHHHHHHHHHHHhhc---CC-CCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHh
Q 001247 257 PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA---VP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL 332 (1115)
Q Consensus 257 P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s---~~-~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~ 332 (1115)
++.|..+++-|..-|-.|....+---.--++.++- .. +..+. +.++..--+=..-.+++||.+.|.+.+-++.
T Consensus 780 ~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l---~~li~~V~~~L~s~sreI~kaAI~fikvlv~ 856 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETL---EKLISMVCLYLASNSREIAKAAIGFIKVLVY 856 (1176)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 34444455555554444433332221122223332 21 11222 3344433333456789999999999988776
Q ss_pred cCCC---CCChHHHHHHHHHHcCCchhHHHHHHHHHHHHh
Q 001247 333 TDPS---RADAPQILTALCDRLLDFDENVRKQVVAVICDV 369 (1115)
Q Consensus 333 ~~~~---~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~l 369 (1115)
.-|. ..-.++|+..+..-++|.--+||.++=.-+..+
T Consensus 857 ~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 857 KFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred cCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5553 112357889999999999999998865544433
No 72
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=86.74 E-value=3.4 Score=52.35 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=118.1
Q ss_pred hhhhhhhhccccCCchHHHHHHHHHHHHhhcCCC-CChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCC--C
Q 001247 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--R 337 (1115)
Q Consensus 261 ~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~-~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~--~ 337 (1115)
..+.|-|.....+.....|-.=.+.|...++.-+ .-+....|.++--.|.-..=.++.||..-.+..+..+..++. .
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 4577777777777888888888888888887533 234567788999999999999999999999999998887664 2
Q ss_pred CChHHHHHHHHHHcCCch---hHHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 001247 338 ADAPQILTALCDRLLDFD---ENVRKQVVAVICDVACHA----LNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 338 ~~~~~l~~~l~~rL~D~D---ekVR~aaV~~i~~la~~~----l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
.....+++.+..--.|.| --||..|.+....+.... +...-+++++.+..-+-|||..||++|+.+=.+-|-
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 334577788887778888 689999999999887633 334466899999999999999999999987655443
No 73
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.18 E-value=4.7 Score=49.49 Aligned_cols=135 Identities=14% Similarity=0.187 Sum_probs=108.7
Q ss_pred hHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCC--CCChhhhcHHHHHHHH----hcccCCCh
Q 001247 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP--GSANNEQFHSVFSEFL----KRLTDRIV 317 (1115)
Q Consensus 244 ~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~--~~~~~~~~~~~~~~fL----~R~~D~s~ 317 (1115)
+.-..+..|....|.+.+--+-++..-|.++.-..|-..++..|.+..+. +.+.+..||...+..+ .|+.|.+|
T Consensus 281 ~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~p 360 (1128)
T COG5098 281 DISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYP 360 (1128)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccch
Confidence 45667888999999999999999999999999999999999999887642 3367788887777655 59999999
Q ss_pred hHHHHHHHHhHHHHhcCCC-CCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-cCCCC
Q 001247 318 AVRMSVLEHVKSCLLTDPS-RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIP 378 (1115)
Q Consensus 318 ~VR~~~v~~~~~il~~~~~-~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~-l~~v~ 378 (1115)
-+|.+.++-+..|..-+.- .....+++..+..||.|----||..||+-.+.+-... |...-
T Consensus 361 y~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~h 423 (1128)
T COG5098 361 YTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASEH 423 (1128)
T ss_pred HHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhhc
Confidence 9999999999886643211 1234689999999999999999999999988876543 44333
No 74
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=85.39 E-value=17 Score=45.92 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=75.0
Q ss_pred Cchhhhhhhhhhhcccc----CCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhccc---CCChhHHHHHHHHhH
Q 001247 256 SPQILSGVVPYLTGELL----TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT---DRIVAVRMSVLEHVK 328 (1115)
Q Consensus 256 ~P~lL~~Vip~Le~eL~----se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~---D~s~~VR~~~v~~~~ 328 (1115)
.+.+...+++.|..+|. ..|...++.+.+.||.| +. |.+...++.-.. +.+..||.+++.+..
T Consensus 480 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~-g~---------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr 549 (618)
T PF01347_consen 480 SRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL-GH---------PESIPVLLPYIEGKEEVPHFIRVAAIQALR 549 (618)
T ss_dssp -SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc-CC---------chhhHHHHhHhhhccccchHHHHHHHHHHH
Confidence 44555556666666665 56789999999999987 22 233344443333 559999999999988
Q ss_pred HHHhcCCCCCChHHHHHHHHHHcCCchh--HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhh-ccCChhHHHHHHHH
Q 001247 329 SCLLTDPSRADAPQILTALCDRLLDFDE--NVRKQVVAVICDVACHALNSIPVETVKLVAERL-RDKSVLVKRYTMER 403 (1115)
Q Consensus 329 ~il~~~~~~~~~~~l~~~l~~rL~D~De--kVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~-rDKk~~VR~~Ai~~ 403 (1115)
.+....| ..+.+.|..-+.|..| .||.+|+-.+-. ..-|..++..++..+ .|+...|+.-....
T Consensus 550 ~~~~~~~-----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~------~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 550 RLAKHCP-----EKVREILLPIFMNTTEDPEVRIAAYLILMR------CNPSPSVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp TGGGT-H-----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH------T---HHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHhhcCc-----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh------cCCCHHHHHHHHHHHhhCchHHHHHHHHHh
Confidence 7644444 2455566666655544 499997665442 123556788888877 67777777655443
No 75
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=84.95 E-value=3.5 Score=52.19 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=86.5
Q ss_pred HHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHH-HH
Q 001247 304 VFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-TV 382 (1115)
Q Consensus 304 ~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~-~l 382 (1115)
.-+.|++=+.|.++.||...+.....+ ...+....+++.+++++.|++.-||..|+-++.++-.-+.+.+++. ..
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 467888899999999999999886642 2223456778899999999999999999999998776667777776 77
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 383 KLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 383 ~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
..+.+.+.|-.+.|=..|..+|..++..
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 7788999999999999999999999887
No 76
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=84.17 E-value=97 Score=36.65 Aligned_cols=321 Identities=12% Similarity=0.082 Sum_probs=177.8
Q ss_pred cCCCcchHHHHHHHHHHHHhhcCCCCCCCc---hHHHHHHHHHHHhcc---CCCCC-CCCChhhHHHHHHHHHhhhhhhh
Q 001247 66 KHQDKDVKLLVATCICEITRITAPEAPYSD---DVLKDIFQLIVGTFS---GLKDT-GGPSFGRRVVILETLAKYRSCVV 138 (1115)
Q Consensus 66 ~h~d~~Vr~~~acCl~dilRi~APdaPy~~---~~lkdif~l~~~~~~---~L~d~-~~~~~~~~~~lLe~la~vks~vl 138 (1115)
...|++=|.-+-..|+..+|.|--. |..+ +.+.-+.+++-+=+. +=++| ++..+.|..-+|..+-.--.++-
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~-~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNL-PDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 3455555555556689999988432 2221 234444444444222 22233 44556777777776655444433
Q ss_pred hccCCchHHHHHHHHHHHHhh-cCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhh---cC---CCc--hHHHHHH
Q 001247 139 MLDLECDELVNEMYSTFFAVA-SDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSAL---GR---NKN--DTARRLA 209 (1115)
Q Consensus 139 ~~dl~~~~li~~lF~~~~~~v-~~~~~~~v~~~m~~Il~~vI~e~~~i~~~~ld~il~~~---~~---~~~--~~a~~la 209 (1115)
.++ ++....+..+..... .++.++.+...-..++..-==....++.+..+.|+.-+ .. .++ ..+-.+=
T Consensus 82 ~l~---~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~ 158 (372)
T PF12231_consen 82 TLS---DDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIY 158 (372)
T ss_pred hCC---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHH
Confidence 333 333334444444443 45567777666666655311111224555555555433 21 112 1667788
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhcCC-CCCCCCcchHHHHHHHHHhhCc-h--hhhhhhhhhhccccCCchHHHHHHHHH
Q 001247 210 MNVIEQCAGKLEAGIKQFLVSSMSGD-SRPGHSHIDYHEVIYDVYRCSP-Q--ILSGVVPYLTGELLTDQLDTRLKAVGL 285 (1115)
Q Consensus 210 ~~v~~~~~~~l~~~i~~~~~~~l~~~-~~~~~~~~~~h~li~el~~~~P-~--lL~~Vip~Le~eL~se~~~~R~~At~~ 285 (1115)
++++.++.+.|...+..+|..++.+- +.......++..+..++-.+.+ + +-..+...+...+..+ .+-..-++.
T Consensus 159 ~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~ 236 (372)
T PF12231_consen 159 KRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCER 236 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHH
Confidence 89999999999999988876554321 0001112235556655544432 2 2222333344444433 777888888
Q ss_pred HHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHH
Q 001247 286 VGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 365 (1115)
Q Consensus 286 lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~ 365 (1115)
+.+|+.+++. ...=|++|..+..=..+.- +. ..+...+.+.-.+.+++.+|..||.+|..+
T Consensus 237 L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~--------------~~---~w~~~n~wL~v~e~cFn~~d~~~k~~A~~a 297 (372)
T PF12231_consen 237 LKEMIKSKDE--YKLAMQIWSVVILLLGSSR--------------LD---SWEHLNEWLKVPEKCFNSSDPQVKIQAFKA 297 (372)
T ss_pred HHHHHhCcCC--cchHHHHHHHHHHHhCCch--------------hh---ccHhHhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999998531 2333889987764332211 11 112345788888899999999999999988
Q ss_pred HHHhhhhh-cC-CCCHHHHH--------HHHHhhccCCh-hHHHHHHHHHHHHHHHh
Q 001247 366 ICDVACHA-LN-SIPVETVK--------LVAERLRDKSV-LVKRYTMERLADIFRGC 411 (1115)
Q Consensus 366 i~~la~~~-l~-~v~~~~l~--------~l~eR~rDKk~-~VR~~Ai~~L~~ly~~~ 411 (1115)
=.-+.+.. .+ ..+.+.++ .+..+.-+|.. .+|..++.+++.++-..
T Consensus 298 W~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~~ 354 (372)
T PF12231_consen 298 WRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYYA 354 (372)
T ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHHH
Confidence 77776622 11 12233332 33333333333 89999999999876443
No 77
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=83.17 E-value=9.3 Score=44.08 Aligned_cols=127 Identities=23% Similarity=0.330 Sum_probs=89.0
Q ss_pred chhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCC------------hhHHHHHH
Q 001247 257 PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI------------VAVRMSVL 324 (1115)
Q Consensus 257 P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s------------~~VR~~~v 324 (1115)
|..+-..++.++. .++..+|..|...+|++-.... +...+.-..|.. -.+|...+
T Consensus 104 ~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 104 PEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred hhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 5555455555554 7999999999999998876542 222222222222 15676666
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 001247 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1115)
Q Consensus 325 ~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L 404 (1115)
+..+. ..+ .+....+...+.|.+..||.+|..+++.+.... ..+...+...+.|-.+.||..++..|
T Consensus 171 ~~l~~----~~~----~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 171 EALGE----LGD----PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred HHHHH----cCC----hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 66543 121 256778889999999999999999999877655 44556778899999999999999999
Q ss_pred HHHHH
Q 001247 405 ADIFR 409 (1115)
Q Consensus 405 ~~ly~ 409 (1115)
|.+=.
T Consensus 238 ~~~~~ 242 (335)
T COG1413 238 GEIGD 242 (335)
T ss_pred cccCc
Confidence 87543
No 78
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=82.20 E-value=10 Score=43.81 Aligned_cols=124 Identities=22% Similarity=0.228 Sum_probs=66.2
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~ 342 (1115)
++|.+..-|..++..+|..|+..+|++-... ..|. ...+|.. |.+..||.......+.+-.. .
T Consensus 75 av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~------a~~~-li~~l~~--d~~~~vR~~aa~aL~~~~~~--------~ 137 (335)
T COG1413 75 AVPLLRELLSDEDPRVRDAAADALGELGDPE------AVPP-LVELLEN--DENEGVRAAAARALGKLGDE--------R 137 (335)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCChh------HHHH-HHHHHHc--CCcHhHHHHHHHHHHhcCch--------h
Confidence 3444555555666666666666555443221 1111 1222222 66667777666666542211 1
Q ss_pred HHHHHHHHcCC------------chhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 343 ILTALCDRLLD------------FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 343 l~~~l~~rL~D------------~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
-+..+...+.| +...||.+++.+++.+. ..+....+.++.+|....||..|...|+.+-..
T Consensus 138 a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~-------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 138 ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG-------DPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 12222223333 22356666655555322 223445667788888888999999888887665
No 79
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=82.15 E-value=3 Score=43.02 Aligned_cols=121 Identities=14% Similarity=0.187 Sum_probs=91.1
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHH
Q 001247 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1115)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v 324 (1115)
.-+++.++++..+..-..++-++-+.+-+.....-..=+.+|+.|.... .....+|.+.-+.|++-+....+++-...+
T Consensus 38 G~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~vle~~~~l~~~ld~l~~lp~~~a~~ll 116 (158)
T PF14676_consen 38 GIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTVLECSSKLKELLDYLSFLPGDVAIGLL 116 (158)
T ss_dssp HHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHHS-S-HHHHGGGGGTTTS-HHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3578888999999888888888888887665553344578888888763 356778889999999999999999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 001247 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1115)
Q Consensus 325 ~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~ 368 (1115)
.+.-.++..+++ ....++--|++-+.--|..+|..||..+++
T Consensus 117 ~Al~PLi~~s~~--lrd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 117 RALLPLIKFSPS--LRDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp HHHHHHHTT-HH--HHHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCHH--HHHHHHHHHHHHHccccHHHHHHHHHHhcC
Confidence 999998887764 334678888989999999999999998864
No 80
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.78 E-value=81 Score=39.90 Aligned_cols=255 Identities=15% Similarity=0.205 Sum_probs=137.6
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhc---CCCCCCCchHHHHHHHHHHHhccCCCCCCCCChhhHH-------------HHH
Q 001247 64 LLKHQDKDVKLLVATCICEITRIT---APEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRV-------------VIL 127 (1115)
Q Consensus 64 lL~h~d~~Vr~~~acCl~dilRi~---APdaPy~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~-------------~lL 127 (1115)
=|+|...=||-.+-||+-.|++.+ -|||| .-|..++.+.. ||+ +-...| |++
T Consensus 142 cleHrhsYVRrNAilaifsIyk~~~~L~pDap------eLi~~fL~~e~----Dps--CkRNAFi~L~~~D~ErAl~Yl~ 209 (948)
T KOG1058|consen 142 CLEHRHSYVRRNAILAIFSIYKNFEHLIPDAP------ELIESFLLTEQ----DPS--CKRNAFLMLFTTDPERALNYLL 209 (948)
T ss_pred HHhCcchhhhhhhheeehhHHhhhhhhcCChH------HHHHHHHHhcc----Cch--hHHHHHHHHHhcCHHHHHHHHH
Confidence 469999999999999999999995 48888 33455554432 221 122223 333
Q ss_pred HHHHhhhhhhhhccCCchHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCchHHHH
Q 001247 128 ETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARR 207 (1115)
Q Consensus 128 e~la~vks~vl~~dl~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~i~~~~ld~il~~~~~~~~~~a~~ 207 (1115)
+++..|-++.-. .+-+|.++.+. ++-..|..=-.++.-|+..+-.+++.+ + |.
T Consensus 210 ~~idqi~~~~~~----LqlViVE~Irk----v~~~~p~~~~~~i~~i~~lL~stssaV-------~------------fE 262 (948)
T KOG1058|consen 210 SNIDQIPSFNDS----LQLVIVELIRK----VCLANPAEKARYIRCIYNLLSSTSSAV-------I------------FE 262 (948)
T ss_pred hhHhhccCccHH----HHHHHHHHHHH----HHhcCHHHhhHHHHHHHHHHhcCCchh-------h------------hh
Confidence 333333222100 12233333322 222333333333333333333332222 1 11
Q ss_pred HHHHHH--HHhhhhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCc----hhhhhhhhhhhccccCCchHHHHH
Q 001247 208 LAMNVI--EQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSP----QILSGVVPYLTGELLTDQLDTRLK 281 (1115)
Q Consensus 208 la~~v~--~~~~~~l~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P----~lL~~Vip~Le~eL~se~~~~R~~ 281 (1115)
-|..++ ......+.++...|+.=+....+. +..+-..+.+.++....- +++..|++. |.+.|-++|.+
T Consensus 263 aa~tlv~lS~~p~alk~Aa~~~i~l~~kesdn--nvklIvldrl~~l~~~~~~il~~l~mDvLrv----Lss~dldvr~K 336 (948)
T KOG1058|consen 263 AAGTLVTLSNDPTALKAAASTYIDLLVKESDN--NVKLIVLDRLSELKALHEKILQGLIMDVLRV----LSSPDLDVRSK 336 (948)
T ss_pred hcceEEEccCCHHHHHHHHHHHHHHHHhccCc--chhhhhHHHHHHHhhhhHHHHHHHHHHHHHH----cCcccccHHHH
Confidence 111111 111233444444444433222111 011112344555553333 444444444 66799999999
Q ss_pred HHHHHHHhhcCCCCChhhhcHHHHH-HHH---hcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhH
Q 001247 282 AVGLVGDLFAVPGSANNEQFHSVFS-EFL---KRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357 (1115)
Q Consensus 282 At~~lg~m~s~~~~~~~~~~~~~~~-~fL---~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~Dek 357 (1115)
+....-++.+++... + --..++ ++. +--+|..-+-|...++....+-.+-|+ .+..++..|.+-+-|+.++
T Consensus 337 tldi~ldLvssrNve--d-iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD~N~~ 411 (948)
T KOG1058|consen 337 TLDIALDLVSSRNVE--D-IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISDSNEA 411 (948)
T ss_pred HHHHHHhhhhhccHH--H-HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhccCCHH
Confidence 999999998876421 1 011111 111 113566677799999999998888886 4678999999999999999
Q ss_pred HHHHHHHHHHH
Q 001247 358 VRKQVVAVICD 368 (1115)
Q Consensus 358 VR~aaV~~i~~ 368 (1115)
-=..++.-+.+
T Consensus 412 aas~vl~FvrE 422 (948)
T KOG1058|consen 412 AASDVLMFVRE 422 (948)
T ss_pred HHHHHHHHHHH
Confidence 87777776665
No 81
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=81.76 E-value=1.8 Score=34.29 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.6
Q ss_pred HHHhhhhhcCCCCH-HHHHHHHHhhccCChhHHHHHHHHH
Q 001247 366 ICDVACHALNSIPV-ETVKLVAERLRDKSVLVKRYTMERL 404 (1115)
Q Consensus 366 i~~la~~~l~~v~~-~~l~~l~eR~rDKk~~VR~~Ai~~L 404 (1115)
+..+....+..... .++..+..|+.|.++.||+.|+..+
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 44444445444433 5778999999999999999998753
No 82
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=81.13 E-value=8.3 Score=50.56 Aligned_cols=138 Identities=20% Similarity=0.213 Sum_probs=100.6
Q ss_pred CcchHHHHHHHHH-----hhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCC
Q 001247 241 SHIDYHEVIYDVY-----RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR 315 (1115)
Q Consensus 241 ~~~~~h~li~el~-----~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~ 315 (1115)
....-.++...+| +..| +.+-.|-+-.-+.+....+|..|.+.+|.||.. .-...+-.+.+.++-=..|.
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~--~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~---~~~e~m~~v~~~~~~ll~~~ 866 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP--LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKS---ATRETMATVINGFLPLLGDL 866 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh--hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccch
Confidence 3444566666666 2344 667788888889999999999999999999976 34566677777777777788
Q ss_pred ChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhh--------hcCCCCHHHHH
Q 001247 316 IVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACH--------ALNSIPVETVK 383 (1115)
Q Consensus 316 s~~VR~~~v~~~~~il~~~~~~---~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~--------~l~~v~~~~l~ 383 (1115)
+--+|.+-....-..|.....+ .-..-++.-|..|+-|.+|.||.+|-+++..+... .+..+|.+++.
T Consensus 867 ~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~ 945 (1549)
T KOG0392|consen 867 DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLA 945 (1549)
T ss_pred hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHH
Confidence 8888887777766666532211 11234678888999999999999999999988652 24456777763
No 83
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=80.43 E-value=3 Score=30.49 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.1
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 382 VKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 382 l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
+-.+.+.+.|..+.||..|...|+++.+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44567888999999999999999999864
No 84
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=79.15 E-value=1.2e+02 Score=41.37 Aligned_cols=257 Identities=17% Similarity=0.227 Sum_probs=135.8
Q ss_pred HhccCCCCC---CCCChhhHHHHHHHHHhhhhhh-hhccCCchHHHHHH---------HHHHHHhhcCCChhcHHHHHHH
Q 001247 107 GTFSGLKDT---GGPSFGRRVVILETLAKYRSCV-VMLDLECDELVNEM---------YSTFFAVASDDHPESVLSSMQT 173 (1115)
Q Consensus 107 ~~~~~L~d~---~~~~~~~~~~lLe~la~vks~v-l~~dl~~~~li~~l---------F~~~~~~v~~~~~~~v~~~m~~ 173 (1115)
.+|++++.| .+..-.++.++|.++-.+-.-- ..+|=.-++||..| .+..+..+..-.|+++...|..
T Consensus 768 G~~p~~~~p~~~g~k~~~k~~~~l~~l~nIL~Gy~~~l~~~~~~li~~Lr~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~ 847 (2196)
T KOG0368|consen 768 GSFPRLGSPAIEGNKPHQKFHSLLNRLENILAGYDPKLDETVQELIKVLRDPELPYLEWQEHISALANRLPPNLDKSLES 847 (2196)
T ss_pred ccccccCCccccccchHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHhcCCCcChHHHHHHHHHHhccCChhHHHHHHH
Confidence 467777766 3334455677777766542111 11111135555555 5556666667789999999999
Q ss_pred HHHHHhcccccccHHHHHHHHHh-hcC-CCch---------HHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCCc
Q 001247 174 IMIVLLEESEDIQEDLLVILLSA-LGR-NKND---------TARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSH 242 (1115)
Q Consensus 174 Il~~vI~e~~~i~~~~ld~il~~-~~~-~~~~---------~a~~la~~v~~~~~~~l~~~i~~~~~~~l~~~~~~~~~~ 242 (1115)
++..-..-...-|...|..|+.. +.. +.++ |--+|..+-+..-.......+.+++.+-+.-+.......
T Consensus 848 ~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~~~~ 927 (2196)
T KOG0368|consen 848 LVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFNGRD 927 (2196)
T ss_pred HHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 88877776668899999988863 322 1111 222333333322222222222222211110000000011
Q ss_pred chHHHHHHHHHhhCchhhhhhhhhhhccccCCc-hHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHH
Q 001247 243 IDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQ-LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRM 321 (1115)
Q Consensus 243 ~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~-~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~ 321 (1115)
...-+.+..|-+-.+.-+..|+-++- ++.. ...-.+.+.+++.+=. ++ ...++.|..-|.++.+-+...-.
T Consensus 928 ~~~e~~i~~lr~~~~~d~~kVv~~i~---SHs~i~~KN~Lv~~ll~~l~~-~s----~~~~~~f~~iL~~l~~L~~~~~~ 999 (2196)
T KOG0368|consen 928 SHYEDVILRLREENKKDLKKVVDIIL---SHSQIKSKNKLVLALLDQLKP-PS----SKVSDEFRDILRKLTELNHTNTS 999 (2196)
T ss_pred chHHHHHHHHHHhhhhHHHHHHHHHH---cchhhhhhhHHHHHHHHHhcC-CC----CCCCHHHHHHHHHHHhhccchHH
Confidence 12234555555555555555554442 2222 2223445555665544 23 34466677777777777777666
Q ss_pred HHHHHhHHHHhcCCCCCChHHHHH-------------------HHHHHcCCc---------------hhHHHHHHHHHHH
Q 001247 322 SVLEHVKSCLLTDPSRADAPQILT-------------------ALCDRLLDF---------------DENVRKQVVAVIC 367 (1115)
Q Consensus 322 ~~v~~~~~il~~~~~~~~~~~l~~-------------------~l~~rL~D~---------------DekVR~aaV~~i~ 367 (1115)
+..-.|.+||...|+.....+.++ ....+|.|+ |+.|+.+|++.+.
T Consensus 1000 eVal~Ar~iLi~~ps~~~R~n~~e~i~~s~i~~~g~~~~~~~~~~l~~lidS~~~v~dvL~~fF~H~d~~v~~~alevYv 1079 (2196)
T KOG0368|consen 1000 EVALKARQILIQSPSYELRHNQIESILKSSIVMTGYQFKKPCLEILKELIDSNLSVFDVLPGFFYHSDPTVSSAALEVYV 1079 (2196)
T ss_pred HHHHHHHHHHHhCcchhhhHHHHHHHHHhhhhcccCcccccchhHHHhhccchhhHHHHHHHhhccccHHHHHHHHHHHH
Confidence 776777777776665322222222 112456666 9999999999987
Q ss_pred Hhhh
Q 001247 368 DVAC 371 (1115)
Q Consensus 368 ~la~ 371 (1115)
.-++
T Consensus 1080 ~ray 1083 (2196)
T KOG0368|consen 1080 RRAY 1083 (2196)
T ss_pred HHhh
Confidence 7443
No 85
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=76.66 E-value=1.1e+02 Score=38.12 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=91.1
Q ss_pred hhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCC-------hhhhcHHHHHHHHhcc-cCCChhHHHHHHH
Q 001247 254 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-------NNEQFHSVFSEFLKRL-TDRIVAVRMSVLE 325 (1115)
Q Consensus 254 ~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~-------~~~~~~~~~~~fL~R~-~D~s~~VR~~~v~ 325 (1115)
+-.|+++..+.+.++..-...+..+|.-|+-.+|.|.-.--.+ ..+++-......|+.. .+.+...+..+++
T Consensus 389 ~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 389 YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 4577788888888887766778899999999999888421111 1223333333333332 3456677888888
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHHHcC---CchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHH
Q 001247 326 HVKSCLLTDPSRADAPQILTALCDRLL---DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTME 402 (1115)
Q Consensus 326 ~~~~il~~~~~~~~~~~l~~~l~~rL~---D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~ 402 (1115)
+.++ ..+| ..++.+...+. +....||.+||.++..++...++.+-.-++....+ ++..++||-.|..
T Consensus 469 aLGN--~g~~------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n--~~e~~EvRiaA~~ 538 (574)
T smart00638 469 ALGN--AGHP------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN--RAEPPEVRMAAVL 538 (574)
T ss_pred hhhc--cCCh------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC--CCCChHHHHHHHH
Confidence 8775 2223 34444444444 45678999999999987776655554444443322 2245789998887
Q ss_pred HHHHH
Q 001247 403 RLADI 407 (1115)
Q Consensus 403 ~L~~l 407 (1115)
.|.+-
T Consensus 539 ~lm~t 543 (574)
T smart00638 539 VLMET 543 (574)
T ss_pred HHHhc
Confidence 77653
No 86
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=76.52 E-value=1.1e+02 Score=39.30 Aligned_cols=177 Identities=19% Similarity=0.168 Sum_probs=98.1
Q ss_pred cccHHHHHHHHhhccccchHhHHHHHHHhhcchHhhhh-cccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccch-
Q 001247 644 GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLA-ATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKS- 721 (1115)
Q Consensus 644 ~~~~~~L~~~l~~~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~~l~~~L~~la~~Gtp~~AK~Av~~L~~~~~~~~~~~- 721 (1115)
++-+.-|++.|..++....-.++..|.+.+-+ .++-. -......+.|.++-..+++..-.-|.++|..++.+.+...
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 55677899999877655555566666666633 22211 1234678889999999998888999999998877654211
Q ss_pred --HHHHHHHHHHhhhhcCCCchHHHHHHHHHhhc--ccccccchHHHHHHHHHhhhcccccccCCCCCCCC-----CChh
Q 001247 722 --LSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTA--MPVFETRESEIEEFIKSKILRCSNKIRNDTKACWD-----DRSE 792 (1115)
Q Consensus 722 --~~~l~~~l~~~l~~~~~~~~~L~sLa~ia~~~--p~~f~~~~~~I~~fiik~iL~~~~~~~~~~~~~W~-----~~~~ 792 (1115)
-.-++..++.-|.........+..|.+++... ...|.. ++.+..+++-++..+.+.. ..+.-|. -+..
T Consensus 368 mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~--TdcIp~L~~~Ll~~~~~~v-~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAY--TDCIPQLMQMLLENSEEEV-QLELIALLINLALNKR 444 (708)
T ss_pred HHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhh--cchHHHHHHHHHhCCCccc-cHHHHHHHHHHhcCHH
Confidence 00133444444543322233566666666653 344532 2356777777665432211 1111110 0111
Q ss_pred --hHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhh
Q 001247 793 --LCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML 831 (1115)
Q Consensus 793 --~~~~K~~aLK~lvn~l~~~~~~~~~~~~~~l~~lL~~i~ 831 (1115)
...++--+|+.|+.+.....+ ..++++++++-
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D-------~lLlKlIRNiS 478 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRD-------PLLLKLIRNIS 478 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhccc-------HHHHHHHHHHH
Confidence 111234456666666644332 56788888864
No 87
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=75.71 E-value=1.1e+02 Score=39.68 Aligned_cols=140 Identities=21% Similarity=0.288 Sum_probs=100.1
Q ss_pred HHHHHHhhc---C--CCCCCCCcchHHHHHHHHHhhCchhh-----hhhhhhhhccccCCchHHHHHHHHHHHHhhcCCC
Q 001247 225 KQFLVSSMS---G--DSRPGHSHIDYHEVIYDVYRCSPQIL-----SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG 294 (1115)
Q Consensus 225 ~~~~~~~l~---~--~~~~~~~~~~~h~li~el~~~~P~lL-----~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~ 294 (1115)
|.||.++.- . ...++.....+|+.+.-+-...|.-. -..+|.|=+-|.-+|..+|..+++++-..+...+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 456666531 1 12334445567787777777777521 2355677788999999999999999998887755
Q ss_pred CChhhhcHHHHH-HHHhcccCCC---hhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHHHcCCchhHHHHHHHHH
Q 001247 295 SANNEQFHSVFS-EFLKRLTDRI---VAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAV 365 (1115)
Q Consensus 295 ~~~~~~~~~~~~-~fL~R~~D~s---~~VR~~~v~~~~~il~~~~~~---~~~~~l~~~l~~rL~D~DekVR~aaV~~ 365 (1115)
.+.+.|-+|+- .+|.=..|-+ ..||...+++...+..--|.+ ....+++.+|.+.|-|+--.||.+||.+
T Consensus 942 -tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 942 -TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred -ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 67777766654 6665555555 889999999987755533432 2346899999999999999999998875
No 88
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=75.51 E-value=1.3e+02 Score=35.30 Aligned_cols=230 Identities=17% Similarity=0.194 Sum_probs=120.8
Q ss_pred hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-cCCCC
Q 001247 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIP 378 (1115)
Q Consensus 300 ~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~-l~~v~ 378 (1115)
+|-+-|..-|+-..--+-+=|.+ -+++|.+...-|+ .+.+-+++-.+..-|-|-.||.+|++.+-.++.-. +.-|.
T Consensus 22 q~v~~y~~il~~~k~~~k~k~la-sq~ip~~fk~fp~--la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~ 98 (460)
T KOG2213|consen 22 QHVDDYEGILKAVKGTSKEKRLA-SQFIPRFFKHFPS--LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVN 98 (460)
T ss_pred hhHHHHHHHHHHhhcchHHHHHH-HHHHHHHHhhCch--hhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhH
Confidence 67777777776666655555554 5777777766676 45578888888899999999999888765544432 22222
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhh--hccCCCchhHHHHhhhcCCC
Q 001247 379 VETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL--YDKDFGSDTIESVLCGSLFP 456 (1115)
Q Consensus 379 ~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~il~~~--y~~d~~~~~ve~vl~e~LlP 456 (1115)
+.+.+.| . =..|+.||.+.-. .+...-...+..|-++|+-+- |.+ .-||+-+
T Consensus 99 d~l~qLL-n-------------k~sl~~Lf~~~~~--~D~~irek~l~fi~tKl~~l~~e~L~----kevE~~i------ 152 (460)
T KOG2213|consen 99 DVLVQLL-N-------------KASLTGLFGQIEV--GDEQIREKVLKFIRTKLITLKGEVLT----KEVERHI------ 152 (460)
T ss_pred HHHHHHH-H-------------HHHHHHHHhhhhh--hhHHHHHHHHHHHHHHhhcccHHHhh----hHHHHHH------
Confidence 2222222 1 2234555554311 000000122334444443220 000 0011110
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcCC-----CcHHHHHHHHHHHHHH
Q 001247 457 TGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQ-----QEMQRYLSLRQMHQDG-----DAPEIQKKILFCFRVM 526 (1115)
Q Consensus 457 ~~~~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~~~-----~~~~~~l~~~~~~~~~-----~~~~~~~kl~~~i~~L 526 (1115)
++-.-..+.+.+..++.+|..++..-+.++ ..|+++++--+...+- ..++.-.++-++...-
T Consensus 153 --------v~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~A 224 (460)
T KOG2213|consen 153 --------VDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMA 224 (460)
T ss_pred --------HHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHh
Confidence 222224556667777888888887766655 3455554443332221 1234444555555444
Q ss_pred hhhcCCchhHHHHHH---------HHHhhhhHHHHHHHHHH--hccCCCHH
Q 001247 527 SRSFAEPAKAEENFL---------ILDQLKDANVWKILMNL--LDSNTSFD 566 (1115)
Q Consensus 527 s~~fpd~~ka~~~l~---------kf~~l~D~r~~~llk~~--~~~~s~~~ 566 (1115)
..+|.-..+....+. .|+++-+.|=..+||.+ |++.|+.+
T Consensus 225 vPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq 275 (460)
T KOG2213|consen 225 VPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQ 275 (460)
T ss_pred hhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHH
Confidence 455555444433322 36677789999999988 44444433
No 89
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=72.46 E-value=5.5 Score=48.39 Aligned_cols=104 Identities=16% Similarity=0.124 Sum_probs=70.5
Q ss_pred HHHHH-HHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHH
Q 001247 302 HSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1115)
Q Consensus 302 ~~~~~-~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~ 380 (1115)
.++.. .|..|..|+++.||+.|+......+.+-|+--.-...++...=-|.|..+.||+.+++.+--+....++.=
T Consensus 273 ~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d--- 349 (740)
T COG5537 273 KDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTD--- 349 (740)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcch---
Confidence 34444 79999999999999999999988777666411011234555666999999999999998876655443311
Q ss_pred HHHHHHHhh---------ccCChhHHHHHHHHHHHHHH
Q 001247 381 TVKLVAERL---------RDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 381 ~l~~l~eR~---------rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
.++...+|- +|=.. ||-.+++.|..+=-
T Consensus 350 ~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 350 AIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHH
Confidence 333334443 34444 88888888776544
No 90
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=72.06 E-value=2e+02 Score=33.41 Aligned_cols=204 Identities=13% Similarity=0.114 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhccc-ccccHHHHHHHHHhhcCCCch--HHH--HHHHHHH-------H
Q 001247 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSALGRNKND--TAR--RLAMNVI-------E 214 (1115)
Q Consensus 147 li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~-~~i~~~~ld~il~~~~~~~~~--~a~--~la~~v~-------~ 214 (1115)
+-..+-+.+...+..+..+.....+.+.|..-..-. ..+|.++++.+-.-+...+.. -+| .++..+. .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 444444555555556656677777777777665554 789999999988877654432 222 2222222 2
Q ss_pred HhhhhhhHHHHHHHHHhhcCCCCC--CCCcchHHHHHH--------------HHH----hhCchhhhhhhhhhhccccCC
Q 001247 215 QCAGKLEAGIKQFLVSSMSGDSRP--GHSHIDYHEVIY--------------DVY----RCSPQILSGVVPYLTGELLTD 274 (1115)
Q Consensus 215 ~~~~~l~~~i~~~~~~~l~~~~~~--~~~~~~~h~li~--------------el~----~~~P~lL~~Vip~Le~eL~se 274 (1115)
.....+-|.+-+.+.++....-.. .....-++-++. ..| .--|.+|.+ |-+...|.++
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~--~kvyskl~~~ 176 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLS--EKVYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcC--HHHHhccCCH
Confidence 222334555555566555432111 111112222222 011 112333333 3445554332
Q ss_pred chHHHHHHHHHHHHhhcCCCCChhhh-cHHHHHHHHhcccCC--ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHc
Q 001247 275 QLDTRLKAVGLVGDLFAVPGSANNEQ-FHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL 351 (1115)
Q Consensus 275 ~~~~R~~At~~lg~m~s~~~~~~~~~-~~~~~~~fL~R~~D~--s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL 351 (1115)
++ =.-.++.+-.++.+........ .....++|+-=.... +++||...++..+.++..+|.. ....++.++...|
T Consensus 177 ~d--~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l 253 (339)
T PF12074_consen 177 ED--LCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWL 253 (339)
T ss_pred hH--HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHH
Confidence 22 2345555555555443222111 133444666666666 6777777777777777766642 3345556666555
Q ss_pred CCch
Q 001247 352 LDFD 355 (1115)
Q Consensus 352 ~D~D 355 (1115)
.+.+
T Consensus 254 ~~~~ 257 (339)
T PF12074_consen 254 SSSE 257 (339)
T ss_pred Hhcc
Confidence 4433
No 91
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=70.53 E-value=15 Score=34.48 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=72.2
Q ss_pred hhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHH
Q 001247 267 LTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTA 346 (1115)
Q Consensus 267 Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~ 346 (1115)
.-.+|+++.+++|-.+..++++++..+. .-...-+.+..-|+.=-.|.++=|=...++....+...+|+ ++++.
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~ 81 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPI 81 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHH
Confidence 3456778899999999999999999876 34556689999999999999999999999999887777773 68889
Q ss_pred HHHHcCCchhH
Q 001247 347 LCDRLLDFDEN 357 (1115)
Q Consensus 347 l~~rL~D~Dek 357 (1115)
|.+...|.+++
T Consensus 82 L~~~y~~~~~~ 92 (92)
T PF10363_consen 82 LLDEYADPSEQ 92 (92)
T ss_pred HHHHHhCcccC
Confidence 98888887763
No 92
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=70.52 E-value=32 Score=35.74 Aligned_cols=137 Identities=15% Similarity=0.180 Sum_probs=87.2
Q ss_pred chhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhC-CcCccccH----HHHHHHHhhccc-cchHhHHHHHHHhhcc
Q 001247 602 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS-PLLLGGTE----EELVNLLKEENE-IIKEGILHVLAKAGGT 675 (1115)
Q Consensus 602 n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~-P~lf~~~~----~~L~~~l~~~~~-~~~~~~L~~L~~~~~~ 675 (1115)
+++.+..+..++..--.+++....-.+..|+..+...+ |+.|..|- ..|.+.|+..++ .+.+.++.+|..+-..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 67788888887754333332223346788999999998 99997764 667777776443 3456666666655322
Q ss_pred hHhhhhcccchHHHHHHHHhhc-CChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcc
Q 001247 676 IREQLAATSSSVDLLLERLCLE-GSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAM 754 (1115)
Q Consensus 676 ~~~~~~~~~~~l~~~L~~la~~-Gtp~~AK~Av~~L~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~L~sLa~ia~~~p 754 (1115)
.... ++ +..+ +||.-.|....+|....+ . .-....|.+|+.+-+.+|
T Consensus 99 ~~~~-p~-----------l~Rei~tp~l~~~i~~ll~l~~~-~-------------------~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 99 IRGK-PT-----------LTREIATPNLPKFIQSLLQLLQD-S-------------------SCPETALDALATLLPHHP 146 (165)
T ss_pred hcCC-Cc-----------hHHHHhhccHHHHHHHHHHHHhc-c-------------------ccHHHHHHHHHHHHHHCC
Confidence 2211 11 1111 457766666565553322 0 122457888999999999
Q ss_pred cccccchHHHHHHHHH
Q 001247 755 PVFETRESEIEEFIKS 770 (1115)
Q Consensus 755 ~~f~~~~~~I~~fiik 770 (1115)
..|..+...|..+++.
T Consensus 147 tt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 147 TTFRPFANKIESALLS 162 (165)
T ss_pred ccccchHHHHHHHHHH
Confidence 9999999899888764
No 93
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.12 E-value=11 Score=45.74 Aligned_cols=141 Identities=21% Similarity=0.191 Sum_probs=83.7
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCC--CChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHh-----cC
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-----TD 334 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~--~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~-----~~ 334 (1115)
+.+|.+-.-|.+.++.+|-.|+-.||.+.++.. -+++-.+ ..-...|.=.+..++ ..++..+-..|. .+
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~-g~l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC-GALDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh-cchHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC
Confidence 456667777889999999999999999998742 0111111 122222332333222 334333333332 22
Q ss_pred CC--CCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 001247 335 PS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1115)
Q Consensus 335 ~~--~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v----~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ 406 (1115)
|+ .+.+..++++|...++.+|+.|...||-+++-++-...+.+ ...+...|-+.+.-.+..|+.-|+..+|+
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 44 24557899999999999999999999998886654332222 11233344555555555566555555444
No 94
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.09 E-value=54 Score=41.18 Aligned_cols=165 Identities=13% Similarity=0.134 Sum_probs=118.1
Q ss_pred hHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHH-------H--------
Q 001247 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSE-------F-------- 308 (1115)
Q Consensus 244 ~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~-------f-------- 308 (1115)
++--++|.++.--|+-|-...|-|-+.|..+|+.+-..||..+.++-...+-++-.--|..|+- |
T Consensus 163 kAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKL 242 (877)
T KOG1059|consen 163 KAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKL 242 (877)
T ss_pred HHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHH
Confidence 6778999999999999999999999999999999999999999999876554443333444432 2
Q ss_pred HhcccCCChhHHHHHHHHhHHHHhc----------------------CCCCCC-hHHHHHHHHHHcCCchhHHHHHHHHH
Q 001247 309 LKRLTDRIVAVRMSVLEHVKSCLLT----------------------DPSRAD-APQILTALCDRLLDFDENVRKQVVAV 365 (1115)
Q Consensus 309 L~R~~D~s~~VR~~~v~~~~~il~~----------------------~~~~~~-~~~l~~~l~~rL~D~DekVR~aaV~~ 365 (1115)
.+...=..|..+.+.++-.-+++.+ +|++.. ++-.+..|+..+-|+|...+.-.+-+
T Consensus 243 F~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 243 FAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred HhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 2344455666666665544443321 222211 22335678888999999999999999
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 001247 366 ICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 366 i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
.+.++..++..|... -..+..-+-||..+||-.|+..|--+-+
T Consensus 323 m~KI~ktHp~~Vqa~-kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAH-KDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHhhhCHHHHHHh-HHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 999999998887653 1123455678999999999988755444
No 95
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=68.55 E-value=56 Score=34.63 Aligned_cols=131 Identities=17% Similarity=0.157 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhhcC-CCCCh---------------hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC------
Q 001247 277 DTRLKAVGLVGDLFAV-PGSAN---------------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD------ 334 (1115)
Q Consensus 277 ~~R~~At~~lg~m~s~-~~~~~---------------~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~------ 334 (1115)
.+|..|..+++.+... ++-.+ ....++++...+ .|.++.||.+.++....+|...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il---~Dp~~kvR~aA~~~l~~lL~gsk~~L~~ 77 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL---KDPSPKVRAAAASALAALLEGSKPFLAQ 77 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH---cCCchhHHHHHHHHHHHHHHccHHHHHH
Confidence 3799999999999877 32111 122344444444 5999999999999998887532
Q ss_pred ------CCC---CC---hHHHHHHHHHHc-----CCchhHHHHHHHHHHHHhhhh-hcCCCCHHH----HHHHHHhhccC
Q 001247 335 ------PSR---AD---APQILTALCDRL-----LDFDENVRKQVVAVICDVACH-ALNSIPVET----VKLVAERLRDK 392 (1115)
Q Consensus 335 ------~~~---~~---~~~l~~~l~~rL-----~D~DekVR~aaV~~i~~la~~-~l~~v~~~~----l~~l~eR~rDK 392 (1115)
+.+ .. ...++..+...| ...+..+=.+.+|++..+... .++.++.++ +..+..+++++
T Consensus 78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC
Confidence 110 01 123344444333 455666777888888877653 356677765 56788899999
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 001247 393 SVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 393 k~~VR~~Ai~~L~~ly~~ 410 (1115)
.+.||..+...+|-+-..
T Consensus 158 d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSV 175 (182)
T ss_pred CCcHHHHHHHHHHHHHcC
Confidence 999999999999988764
No 96
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=68.22 E-value=63 Score=40.75 Aligned_cols=139 Identities=12% Similarity=0.131 Sum_probs=83.6
Q ss_pred CchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcC----C---------CCChhhhcHHHHHHHHhc-ccCCChhHHH
Q 001247 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV----P---------GSANNEQFHSVFSEFLKR-LTDRIVAVRM 321 (1115)
Q Consensus 256 ~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~----~---------~~~~~~~~~~~~~~fL~R-~~D~s~~VR~ 321 (1115)
.+++|..+.+.++..-...+..+|..|.-.+|.|... . .......+-.-+..-|+. ....+..-++
T Consensus 429 t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 508 (618)
T PF01347_consen 429 TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKI 508 (618)
T ss_dssp -HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHH
T ss_pred CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHH
Confidence 4455555555555554456778888888888887742 1 123445565555555553 3456778999
Q ss_pred HHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCc---hhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCC--hhH
Q 001247 322 SVLEHVKSCLLTDPSRADAPQILTALCDRLLDF---DENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS--VLV 396 (1115)
Q Consensus 322 ~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~---DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk--~~V 396 (1115)
.++++.+++ .+| ++++.|...+.+. ...||.+||.++..++... |.++...+..-..|.. ++|
T Consensus 509 ~~LkaLgN~--g~~------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~----~~~v~~~l~~I~~n~~e~~Ev 576 (618)
T PF01347_consen 509 VYLKALGNL--GHP------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC----PEKVREILLPIFMNTTEDPEV 576 (618)
T ss_dssp HHHHHHHHH--T-G------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-----HHHHHHHHHHHHH-TTS-HHH
T ss_pred HHHHHhhcc--CCc------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC----cHHHHHHHHHHhcCCCCChhH
Confidence 999999874 233 4666666666666 8999999988766543333 4444445555555544 689
Q ss_pred HHHHHHHHHH
Q 001247 397 KRYTMERLAD 406 (1115)
Q Consensus 397 R~~Ai~~L~~ 406 (1115)
|-.|...|.+
T Consensus 577 RiaA~~~lm~ 586 (618)
T PF01347_consen 577 RIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998877765
No 97
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.97 E-value=4.2e+02 Score=35.60 Aligned_cols=145 Identities=17% Similarity=0.194 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHhhhhhhhhccCC-chHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcC
Q 001247 121 GRRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGR 199 (1115)
Q Consensus 121 ~~~~~lLe~la~vks~vl~~dl~-~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~i~~~~ld~il~~~~~ 199 (1115)
..-.+.+.-+.+-..++-..|.+ |=.=+..+|..||.+- .+..+++.....+++..|+.++-.+-..+-...+..+..
T Consensus 282 ~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~-~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~ 360 (1176)
T KOG1248|consen 282 LLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTIL-ESLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLD 360 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHH-hcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHc
Confidence 44566666666666666666655 5455667888888854 344567888899999999999888666666665555544
Q ss_pred CCchHHHHH----HHHHHHHhhhhhhHHHHHHHHHhhc-CCCCCCCCcchH-HHHHHHHHhhCchhhhhhhhh
Q 001247 200 NKNDTARRL----AMNVIEQCAGKLEAGIKQFLVSSMS-GDSRPGHSHIDY-HEVIYDVYRCSPQILSGVVPY 266 (1115)
Q Consensus 200 ~~~~~a~~l----a~~v~~~~~~~l~~~i~~~~~~~l~-~~~~~~~~~~~~-h~li~el~~~~P~lL~~Vip~ 266 (1115)
-+..++|.+ -..+|++|...-.|++..-+..+-. ..+......... +-+...+-..=|+.+++++|.
T Consensus 361 ~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpL 433 (1176)
T KOG1248|consen 361 YKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPL 433 (1176)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcch
Confidence 444455544 4555566666555555554444321 111222222234 445667777899999999995
No 98
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.92 E-value=15 Score=45.67 Aligned_cols=112 Identities=18% Similarity=0.202 Sum_probs=80.1
Q ss_pred CchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCC
Q 001247 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1115)
Q Consensus 256 ~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~ 335 (1115)
.-+++.-.+-++.-.|.+.|+-.=-.|...|+. |..|+ ++ +++.+.-+.=.+-.-|-||...|-..-.+...-|
T Consensus 103 ~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~-fvTpd--LA---RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP 176 (877)
T KOG1059|consen 103 DTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSC-IVTPD--LA---RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP 176 (877)
T ss_pred CccHHHHHHHHHHHHhccCccchhhheeccccc-ccCch--hh---HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh
Confidence 334444445567777777777776777777763 44443 45 3344444444455678899999988888777777
Q ss_pred CCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC
Q 001247 336 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1115)
Q Consensus 336 ~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~ 375 (1115)
+ -.+.-.+.|.++|-|||..|--|||.+||++|..++.
T Consensus 177 e--Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 177 E--ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred H--hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 5 2356778999999999999999999999999998765
No 99
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=67.00 E-value=60 Score=38.23 Aligned_cols=184 Identities=18% Similarity=0.318 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhccCCCCCCCCChhhHHH-HHH----HHH---hhhh-h----hhhccCC-chHH----HHHHHHHHHHh
Q 001247 97 VLKDIFQLIVGTFSGLKDTGGPSFGRRVV-ILE----TLA---KYRS-C----VVMLDLE-CDEL----VNEMYSTFFAV 158 (1115)
Q Consensus 97 ~lkdif~l~~~~~~~L~d~~~~~~~~~~~-lLe----~la---~vks-~----vl~~dl~-~~~l----i~~lF~~~~~~ 158 (1115)
-++++|-+|+.-++.+.-..++|-.+... |.+ .+. ..+. + ...++-| ..++ +..+=+.|+..
T Consensus 140 ai~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~~~~~l~~~il~~i~~~fl~~ 219 (373)
T PF14911_consen 140 AIRKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTPRNEELRKFILQVIRSNFLEF 219 (373)
T ss_pred HHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhhhhhHHHHHHHHHHHHHHhcC
Confidence 48999999999888888778888666532 111 111 1111 0 1122222 1222 22222233332
Q ss_pred hcCCChhcHHHHHHHHHHHHhcc----cccccHHHHHHHH----HhhcC-CCc----hHHHHHHHHHHHHhh--------
Q 001247 159 ASDDHPESVLSSMQTIMIVLLEE----SEDIQEDLLVILL----SALGR-NKN----DTARRLAMNVIEQCA-------- 217 (1115)
Q Consensus 159 v~~~~~~~v~~~m~~Il~~vI~e----~~~i~~~~ld~il----~~~~~-~~~----~~a~~la~~v~~~~~-------- 217 (1115)
.+.-|+.=......++.+++++ .+..-...++.++ +++.. +.. .-|-.+-..+++.|.
T Consensus 220 -~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~ 298 (373)
T PF14911_consen 220 -KGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPR 298 (373)
T ss_pred -CCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHH
Confidence 2322333334445555555555 2222222333322 22211 111 234444444455555
Q ss_pred hhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccC--------CchHHHHHHHHHHH
Q 001247 218 GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLT--------DQLDTRLKAVGLVG 287 (1115)
Q Consensus 218 ~~l~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~s--------e~~~~R~~At~~lg 287 (1115)
+.++..+++|..+-+. -....++.++..+....|+++.+.||+++.++.. +|...|..=-++++
T Consensus 299 ~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~ 370 (373)
T PF14911_consen 299 EQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDSERKRGLGRDVALRKALSRLLS 370 (373)
T ss_pred HHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 3455555555544211 1223689999999999999999999999998864 35666665555544
No 100
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.81 E-value=3.7e+02 Score=34.54 Aligned_cols=238 Identities=17% Similarity=0.149 Sum_probs=120.0
Q ss_pred HHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHH
Q 001247 630 DILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHA 709 (1115)
Q Consensus 630 ~LL~~iS~~~P~lf~~~~~~L~~~l~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la~~Gtp~~AK~Av~~ 709 (1115)
.....+...+|..+...+..|--++........-.++++|.+.+-..+..... -..-|+.+....++.-|-+|+-.
T Consensus 267 rai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~----cN~elE~lItd~NrsIat~AITt 342 (865)
T KOG1078|consen 267 RAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV----CNLDLESLITDSNRSIATLAITT 342 (865)
T ss_pred HHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc----cchhHHhhhcccccchhHHHHHH
Confidence 44556667777777776666655555554445566778887776543332221 22336667777777788888888
Q ss_pred HHhhcCCCccchHHHHHHHHHHhhh--hcCCCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhcccccccCCCCCCC
Q 001247 710 LAAITKDDGLKSLSVLYKRLVDMLE--EKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACW 787 (1115)
Q Consensus 710 L~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~L~sLa~ia~~~p~~f~~~~~~I~~fiik~iL~~~~~~~~~~~~~W 787 (1115)
|.+.+..+ ...-|++.|..... .+........++-.+....| .+-+.+++|+.+ +|... ++-+-+..-
T Consensus 343 LLKTG~e~---sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp----~k~~~~m~FL~~-~Lr~e--Gg~e~K~ai 412 (865)
T KOG1078|consen 343 LLKTGTES---SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP----RKHTVMMNFLSN-MLREE--GGFEFKRAI 412 (865)
T ss_pred HHHhcchh---HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc----HHHHHHHHHHHH-HHHhc--cCchHHHHH
Confidence 77544322 22335555555432 11244445555655555444 444457777653 33321 110000000
Q ss_pred CCC-----hhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCccccCCCCChh-----------HHhhhh
Q 001247 788 DDR-----SELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSV-----------DKAHLR 851 (1115)
Q Consensus 788 ~~~-----~~~~~~K~~aLK~lvn~l~~~~~~~~~~~~~~l~~lL~~i~~~Gel~~~~~t~~~-----------~~srLR 851 (1115)
++. .+.-.+|..||--+.-....+ +. -+...++|.-++.+|=... +|.. +-+..|
T Consensus 413 vd~Ii~iie~~pdsKe~~L~~LCefIEDc---e~---~~i~~rILhlLG~EgP~a~---~Pskyir~iyNRviLEn~ivR 483 (865)
T KOG1078|consen 413 VDAIIDIIEENPDSKERGLEHLCEFIEDC---EF---TQIAVRILHLLGKEGPKAP---NPSKYIRFIYNRVILENAIVR 483 (865)
T ss_pred HHHHHHHHHhCcchhhHHHHHHHHHHHhc---cc---hHHHHHHHHHHhccCCCCC---CcchhhHHHhhhhhhhhhhhH
Confidence 000 001112444444333333221 11 1333444444455554432 2222 346779
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHhhcccCCchhHHHH
Q 001247 852 LASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKL 891 (1115)
Q Consensus 852 L~Aa~~lLKLa~~~~~~i~~~~~~l~~~~~qD~~~~VR~~ 891 (1115)
.+|-.++-|.... +....+.+-.++-.-..|...+||.+
T Consensus 484 aaAv~alaKfg~~-~~~l~~sI~vllkRc~~D~DdevRdr 522 (865)
T KOG1078|consen 484 AAAVSALAKFGAQ-DVVLLPSILVLLKRCLNDSDDEVRDR 522 (865)
T ss_pred HHHHHHHHHHhcC-CCCccccHHHHHHHHhcCchHHHHHH
Confidence 9999988888832 23333344444444456777888877
No 101
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=66.46 E-value=3.4e+02 Score=33.93 Aligned_cols=259 Identities=17% Similarity=0.224 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcc-----cccccHHHHHHHHHhhcCCCch--HHHHHHHHHHHHhh-
Q 001247 146 ELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEE-----SEDIQEDLLVILLSALGRNKND--TARRLAMNVIEQCA- 217 (1115)
Q Consensus 146 ~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e-----~~~i~~~~ld~il~~~~~~~~~--~a~~la~~v~~~~~- 217 (1115)
+.+.+.|.-+.+.++. |-.++...++.-|..+|-- ...-..+...+++..|...+.. .--.+..++|.+..
T Consensus 395 e~fd~vl~pLw~g~~~-hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~ 473 (975)
T COG5181 395 EQFDEVLCPLWEGASQ-HRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGT 473 (975)
T ss_pred HHHHHHHHHHHHHHHh-cCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCC
Confidence 3444555555555543 4445555556666555532 2345667888888888543221 33344445554332
Q ss_pred ---hhhhHHH-HHHHHHh----hcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHh
Q 001247 218 ---GKLEAGI-KQFLVSS----MSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDL 289 (1115)
Q Consensus 218 ---~~l~~~i-~~~~~~~----l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m 289 (1115)
.++...| ..||+-. ..+|. ++....-.-..+..=.--+|.+.--++ ..++.|-++.|..++.++.+.
T Consensus 474 ~tp~~lr~~v~pefF~~fw~rr~A~dr-~~~k~v~~ttvilAk~~g~~~v~~kil----~~~~De~ep~r~m~a~~vsri 548 (975)
T COG5181 474 DTPWKLRDQVSPEFFSPFWRRRSAGDR-RSYKQVVLTTVILAKMGGDPRVSRKIL----EYYSDEPEPYRKMNAGLVSRI 548 (975)
T ss_pred CCHHHHHHhhcHHhhchHHHhhhcccc-cccceeehhHHHHHHHcCChHHHHHHH----hhccCCcchhhhhhhHHHHHH
Confidence 2333333 2233221 11221 111111122233332333555544443 446668899999999999999
Q ss_pred hcCCCC-Ch----------------------------------------hhhc-HHHHHHHHhcccCCChhHHHHHHHHh
Q 001247 290 FAVPGS-AN----------------------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHV 327 (1115)
Q Consensus 290 ~s~~~~-~~----------------------------------------~~~~-~~~~~~fL~R~~D~s~~VR~~~v~~~ 327 (1115)
|+.-|. .| .+.| +.+-..-|++.+-+.|.||..-.+.+
T Consensus 549 ~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~ 628 (975)
T COG5181 549 FSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLM 628 (975)
T ss_pred HHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 987642 11 1222 67788899999999999999888887
Q ss_pred HHHHh--cCCC-CCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh-hhcCCC--CH-HHHHHHHHhhccCChhHHHHH
Q 001247 328 KSCLL--TDPS-RADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSI--PV-ETVKLVAERLRDKSVLVKRYT 400 (1115)
Q Consensus 328 ~~il~--~~~~-~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~-~~l~~v--~~-~~l~~l~eR~rDKk~~VR~~A 400 (1115)
+.+.. .+.. ..+..-+-..|-+-|-.-+..|=-.+++++|.+-. ..++.. |. .++-++..-+|.|+.+|-...
T Consensus 629 ~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nt 708 (975)
T COG5181 629 GSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANT 708 (975)
T ss_pred HHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhH
Confidence 76432 2221 11111222345556667778888888888887643 445543 22 355677888899999999989
Q ss_pred HHHHHHHHHH
Q 001247 401 MERLADIFRG 410 (1115)
Q Consensus 401 i~~L~~ly~~ 410 (1115)
+..+|.+-..
T Consensus 709 i~lvg~I~~~ 718 (975)
T COG5181 709 IALVGTICMN 718 (975)
T ss_pred HHHHHHHHhc
Confidence 9888887665
No 102
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.35 E-value=2.3e+02 Score=36.54 Aligned_cols=116 Identities=17% Similarity=0.311 Sum_probs=68.8
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhhhhhccCC--c-hHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhccccc-ccHH
Q 001247 113 KDTGGPSFGRRVVILETLAKYRSCVVMLDLE--C-DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-IQED 188 (1115)
Q Consensus 113 ~d~~~~~~~~~~~lLe~la~vks~vl~~dl~--~-~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~-i~~~ 188 (1115)
++|++|-| ++|+.|+++-+ +.-.|+-+ + ..+...||=.|-.+-+.| -....++...+|+.+++-+.. +|.+
T Consensus 603 KNPs~P~f--nHYLFEsi~~l--i~~t~~~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYvfQlla~lve~~~~~ip~~ 677 (960)
T KOG1992|consen 603 KNPSNPQF--NHYLFESIGLL--IRKTCKANPSAVSSLEEALFPVFQTILSED-IQEFIPYVFQLLAVLVEHSSGTIPDS 677 (960)
T ss_pred cCCCCchh--HHHHHHHHHHH--HHHHhccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 56777754 47889998753 22335543 1 346666664444443322 245778889999999998766 8887
Q ss_pred HHHHHHHhhcCC---Cc---hHHHHHHHHHHHHhhhhhh-----HHHHHHHHHhhc
Q 001247 189 LLVILLSALGRN---KN---DTARRLAMNVIEQCAGKLE-----AGIKQFLVSSMS 233 (1115)
Q Consensus 189 ~ld~il~~~~~~---~~---~~a~~la~~v~~~~~~~l~-----~~i~~~~~~~l~ 233 (1115)
...++.-.+.++ ++ .+.-+|-...+.+.+.... .+|-.+|..++.
T Consensus 678 ~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLia 733 (960)
T KOG1992|consen 678 YSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIA 733 (960)
T ss_pred HHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhc
Confidence 655444333321 12 2556777777766665433 345556665554
No 103
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=66.09 E-value=1.5e+02 Score=34.13 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=40.2
Q ss_pred HHHHHHHhhccccchHhHHHHHHHhh--cchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 001247 648 EELVNLLKEENEIIKEGILHVLAKAG--GTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1115)
Q Consensus 648 ~~L~~~l~~~~~~~~~~~L~~L~~~~--~~~~~~~~~~~~~l~~~L~~la~~Gtp~~AK~Av~~L~~~~ 714 (1115)
++.++.+.++.....+.+|..+.+.- ++..+.+......+...+.+....|++++...|.++++.+.
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ 114 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLA 114 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 34445555555455666777665432 22333332222346677778888899999999988876553
No 104
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=65.62 E-value=20 Score=45.87 Aligned_cols=135 Identities=17% Similarity=0.234 Sum_probs=100.7
Q ss_pred CchHHHHHHHHHHHHhhcCCCCC-hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcC
Q 001247 274 DQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1115)
Q Consensus 274 e~~~~R~~At~~lg~m~s~~~~~-~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~ 352 (1115)
|--+-|..|...+|.+...-..+ .-.+.++.+..+ ..|..|.||..+-+.++.+-..-++....+.+...+..-..
T Consensus 210 d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~l---c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~ 286 (759)
T KOG0211|consen 210 DWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSL---CQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLR 286 (759)
T ss_pred hhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhh---ccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhh
Confidence 33447888888888888654322 334555555555 58999999999999988766544444445678889999999
Q ss_pred CchhHHHHHHHHHHHHhhh-hhcC-CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 353 DFDENVRKQVVAVICDVAC-HALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 353 D~DekVR~aaV~~i~~la~-~~l~-~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
|-.+-||.+|+.....+.. ..-. .+-.....++-.-.-|+.+.||--.+.....+|...
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~ 347 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAV 347 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHh
Confidence 9999999999998887654 2222 344456678888889999999999999999999876
No 105
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=65.56 E-value=20 Score=45.99 Aligned_cols=136 Identities=12% Similarity=0.060 Sum_probs=96.6
Q ss_pred cccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHH
Q 001247 270 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1115)
Q Consensus 270 eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~ 349 (1115)
++..--..+|..++-|+|+|.-+++ .+++.|-+.+..=|....| +.||--.|=+..+|-.. ......--++.+..
T Consensus 939 ~g~~~~~~vra~~vvTlakmcLah~-~LaKr~~P~lvkeLe~~~~--~aiRnNiV~am~D~C~~--YTam~d~YiP~I~~ 1013 (1529)
T KOG0413|consen 939 EGAMFSDKVRAVGVVTLAKMCLAHD-RLAKRLMPMLVKELEYNTA--HAIRNNIVLAMGDICSS--YTAMTDRYIPMIAA 1013 (1529)
T ss_pred cccccchHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhhH--HHHhcceeeeehhhHHH--HHHHHHHhhHHHHH
Confidence 3333446789999999999998876 7899888887777765544 56775554444443221 11111235678889
Q ss_pred HcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 350 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 350 rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
+|.||++-||.+++.-+..+-.+.+-.-..+++--+---.-|-+..||..|=-.+|.+...
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999888877776666777654444556799999998877777766654
No 106
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=64.82 E-value=3.3e+02 Score=33.23 Aligned_cols=166 Identities=11% Similarity=0.164 Sum_probs=98.6
Q ss_pred CCCChhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHH
Q 001247 116 GGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLS 195 (1115)
Q Consensus 116 ~~~~~~~~~~lLe~la~vks~vl~~dl~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~i~~~~ld~il~ 195 (1115)
+...+.+.+.++.++-+..+..+ .++-+..|-+..+.+.+....+.....-..++..||. ...||.+-+..++.
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l-----~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~ 220 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYL-----DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIE 220 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHH
Confidence 44556777777777666544322 2455555555555554443344444555777777777 67899999998887
Q ss_pred hhcC-----CCchHHHHHHHHHHHHh-hhhhhHHHHHHHHHhhcCCCCCCCC---cch--HHHHHHHHHhh----Cchh-
Q 001247 196 ALGR-----NKNDTARRLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSRPGHS---HID--YHEVIYDVYRC----SPQI- 259 (1115)
Q Consensus 196 ~~~~-----~~~~~a~~la~~v~~~~-~~~l~~~i~~~~~~~l~~~~~~~~~---~~~--~h~li~el~~~----~P~l- 259 (1115)
-+-. +-.+++++..+++|..- ...+-+.++.++ .+.+..... .++ .+-+=.-+|.. .|.+
T Consensus 221 vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL----~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~ 296 (464)
T PF11864_consen 221 VLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDIL----RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLP 296 (464)
T ss_pred HHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHH----cccCccccccHHHHhhHHHHHHHHHhccccCCcceec
Confidence 5521 22348899999998642 333434444444 221111111 111 12222334666 3443
Q ss_pred --hhhhhhhhhccccCCchHHHHHHHHHHHHhhc
Q 001247 260 --LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 291 (1115)
Q Consensus 260 --L~~Vip~Le~eL~se~~~~R~~At~~lg~m~s 291 (1115)
...|+|.+..=|++.++-+=.....++-+++.
T Consensus 297 ~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 297 FSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred ccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 33499999999998888777788888888883
No 107
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=64.26 E-value=2.5e+02 Score=31.60 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=44.1
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHhhhhhc-CCCCHH----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 345 TALCDRLLDFDENVRKQVVAVICDVACHAL-NSIPVE----TVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 345 ~~l~~rL~D~DekVR~aaV~~i~~la~~~l-~~v~~~----~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
+.|+..|.|.|+.+|..++..++.+...-. ..++.+ ++....+|+.|.. .|.- |+.+|..+.+.
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~-~l~gl~~L~~~ 70 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQP-ALKGLLALVKM 70 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHH-HHHHHHHHHhC
Confidence 467889999999999999999887765433 234442 3457778886653 3333 37777777754
No 108
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=64.10 E-value=55 Score=43.33 Aligned_cols=156 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHhh--CchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHH-----hccc
Q 001247 241 SHIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFL-----KRLT 313 (1115)
Q Consensus 241 ~~~~~h~li~el~~~--~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL-----~R~~ 313 (1115)
..+++.+|+.++-++ .-..|-.|+|++-+-+...+.++|..|.+||.++++.-. ++....-.+|.++| .=.+
T Consensus 439 tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr-~~~~~daniF~eYlfP~L~~l~~ 517 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR-DIPPSDANIFPEYLFPHLNHLLN 517 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc-CCCcccchhhHhhhhhhhHhhhc
Q ss_pred C-CChhHHHHHHHHhHHHHh------------------cCCCC-------------CChHHHHHHHHHHcCCchhHHHHH
Q 001247 314 D-RIVAVRMSVLEHVKSCLL------------------TDPSR-------------ADAPQILTALCDRLLDFDENVRKQ 361 (1115)
Q Consensus 314 D-~s~~VR~~~v~~~~~il~------------------~~~~~-------------~~~~~l~~~l~~rL~D~DekVR~a 361 (1115)
| -...||++...+.+.+-. +.|.. ....-+...+...|.|++.-||.+
T Consensus 518 d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~ 597 (1431)
T KOG1240|consen 518 DSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRA 597 (1431)
T ss_pred cCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHH
Q ss_pred HHHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHH
Q 001247 362 VVAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVK 397 (1115)
Q Consensus 362 aV~~i~~la~~~l~~v~~~-~l~~l~eR~rDKk~~VR 397 (1115)
-++.|+.+..+-...=+.+ +|..+.-=+-||.+..|
T Consensus 598 Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR 634 (1431)
T KOG1240|consen 598 LLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLR 634 (1431)
T ss_pred HHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHH
No 109
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=63.92 E-value=26 Score=43.70 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=79.7
Q ss_pred HHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhh-hcCCCCHHHHHHHH
Q 001247 308 FLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACH-ALNSIPVETVKLVA 386 (1115)
Q Consensus 308 fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~-~l~~v~~~~l~~l~ 386 (1115)
-++=|.=.+..||...++...+.+-.-+......+|.+.+..=+.|+++.+|..+|+.+..++.. +-..+..|+++.++
T Consensus 335 l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~a 414 (690)
T KOG1243|consen 335 LLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLA 414 (690)
T ss_pred HHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHH
Confidence 34445666789999999999886653222112347889999999999999999999999998863 34568999999998
Q ss_pred HhhccCChhHHHHHHHHHHHHHH
Q 001247 387 ERLRDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 387 eR~rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
.---|-...+|-..-..||++=-
T Consensus 415 r~q~d~~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 415 RLQPDEHGGIRTNTTICLGKIAP 437 (690)
T ss_pred hhCccccCcccccceeeeccccc
Confidence 88778888999888888777633
No 110
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=63.80 E-value=1.8e+02 Score=37.88 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=52.6
Q ss_pred HHHHHHHHHcC-CchhHHHHHHHHHHHHhhh-hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 342 QILTALCDRLL-DFDENVRKQVVAVICDVAC-HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 342 ~l~~~l~~rL~-D~DekVR~aaV~~i~~la~-~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
.++..+..|+. |.-+.||.+++........ .+....=++.|+.|-+.+||.-.+||+.+...|+++-..
T Consensus 576 ~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~ 646 (1529)
T KOG0413|consen 576 DVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLR 646 (1529)
T ss_pred HHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhh
Confidence 44456777777 8889999999887765443 222223334589999999999999999999999998775
No 111
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=63.44 E-value=2.8e+02 Score=31.96 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=91.0
Q ss_pred chHHHHHHHHHhhCchhhhh-----hhhhhhccccC-CchHHHHHHHHHHHHhhc-CCCCChhhhc---HHHHHHHHhcc
Q 001247 243 IDYHEVIYDVYRCSPQILSG-----VVPYLTGELLT-DQLDTRLKAVGLVGDLFA-VPGSANNEQF---HSVFSEFLKRL 312 (1115)
Q Consensus 243 ~~~h~li~el~~~~P~lL~~-----Vip~Le~eL~s-e~~~~R~~At~~lg~m~s-~~~~~~~~~~---~~~~~~fL~R~ 312 (1115)
.+.++||.+|+.++|+.+.. .+-+|+.||.. +|+-+|....+++..+.- .+|..|..+- ..+-+-.-|--
T Consensus 189 vRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGad 268 (524)
T KOG4413|consen 189 VRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGAD 268 (524)
T ss_pred HHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCC
Confidence 36899999999999999864 68899999997 899999999998877653 4454543221 22233334444
Q ss_pred cCCChhHHHHHHHHhHHHHhcCCCCC-ChHHHHH-------HHHHH--cCCchhHHHHHHHHHHHHhhhhh-----cCCC
Q 001247 313 TDRIVAVRMSVLEHVKSCLLTDPSRA-DAPQILT-------ALCDR--LLDFDENVRKQVVAVICDVACHA-----LNSI 377 (1115)
Q Consensus 313 ~D~s~~VR~~~v~~~~~il~~~~~~~-~~~~l~~-------~l~~r--L~D~DekVR~aaV~~i~~la~~~-----l~~v 377 (1115)
.|.=...|..|.-- .++.+..-.+ -.+.+.+ +.-+. .+|||. --+||.+++.+.... +-.-
T Consensus 269 sdPfekfralmgfg--kffgkeaimdvseeaicealiiaidgsfEmiEmnDpda--ieaAiDalGilGSnteGadlllkT 344 (524)
T KOG4413|consen 269 SDPFEKFRALMGFG--KFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA--IEAAIDALGILGSNTEGADLLLKT 344 (524)
T ss_pred CCcHHHHHHHHHHH--HHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH--HHHHHHHHHhccCCcchhHHHhcc
Confidence 44444555443211 1111110000 0112222 11122 355553 456777777665321 1122
Q ss_pred CHHHHHHHHHhhccCChhHH-HHHHHHHHHHHHHh
Q 001247 378 PVETVKLVAERLRDKSVLVK-RYTMERLADIFRGC 411 (1115)
Q Consensus 378 ~~~~l~~l~eR~rDKk~~VR-~~Ai~~L~~ly~~~ 411 (1115)
+..-.+.+..|.-|.+..-. ..|+..|+.+-...
T Consensus 345 gppaaehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 345 GPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred CChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 33345556667777664333 34667776665543
No 112
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.00 E-value=5.2e+02 Score=34.60 Aligned_cols=314 Identities=14% Similarity=0.122 Sum_probs=173.6
Q ss_pred hhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhcc
Q 001247 62 PVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLD 141 (1115)
Q Consensus 62 ~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~d 141 (1115)
..+.+-.-.-||--.|--+|+|-|---|+ +--++.++++.+.. +++.+.-.-.++||.++.++..-. +
T Consensus 86 ~~~~~E~~~~vr~k~~dviAeia~~~l~e------~WPell~~L~q~~~---S~~~~~rE~al~il~s~~~~~~~~---~ 153 (1075)
T KOG2171|consen 86 EIIQSETEPSVRHKLADVIAEIARNDLPE------KWPELLQFLFQSTK---SPNPSLRESALLILSSLPETFGNT---L 153 (1075)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHHhc---CCCcchhHHHHHHHHhhhhhhccc---c
Confidence 34555666778888999999999977777 56677888887753 344444455688888887753211 1
Q ss_pred CCchHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccc--c-cc-------HHHHHHHHHhhcCCCch---HHHHH
Q 001247 142 LECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--D-IQ-------EDLLVILLSALGRNKND---TARRL 208 (1115)
Q Consensus 142 l~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~--~-i~-------~~~ld~il~~~~~~~~~---~a~~l 208 (1115)
-+--+-+..||...+.- ++++ |...-..-++.++...+ . .- +.++.++=.-+..++.+ .++..
T Consensus 154 ~~~~~~l~~lf~q~~~d--~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~ 229 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTD--PSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEA 229 (1075)
T ss_pred chhHHHHHHHHHHhccC--Ccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHH
Confidence 11234566666665542 2333 77666777777776654 1 11 11111111111111221 33344
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHhh---cCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHH
Q 001247 209 AMNVIEQCAGKLEAGIKQFLVSSM---SGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGL 285 (1115)
Q Consensus 209 a~~v~~~~~~~l~~~i~~~~~~~l---~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~ 285 (1115)
=-++...+..-+.|++.+.+.-++ .+++........+.++|.-+-+.+|.+.---=| +-+ .+...+
T Consensus 230 l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~----------~lv~~~ 298 (1075)
T KOG2171|consen 230 LIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL-LGH----------TLVPVL 298 (1075)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhc----------cHHHHH
Confidence 444444444445555544433222 121111111224677888777777765432111 111 111122
Q ss_pred HHHhhcCCCCChhhhcHHHHHHHHh-cccCCCh-hHHHHHHHHhHHHHhcCCCC-CChHHHHHHHHHHcCCchhHHHHHH
Q 001247 286 VGDLFAVPGSANNEQFHSVFSEFLK-RLTDRIV-AVRMSVLEHVKSCLLTDPSR-ADAPQILTALCDRLLDFDENVRKQV 362 (1115)
Q Consensus 286 lg~m~s~~~~~~~~~~~~~~~~fL~-R~~D~s~-~VR~~~v~~~~~il~~~~~~-~~~~~l~~~l~~rL~D~DekVR~aa 362 (1115)
+. |...-..+ .+|.+ --.|.+. +.=.-..+.+-+-+..+..+ -...-+.+.+...|.-+|++=|.|+
T Consensus 299 l~-~mte~~~D---------~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 299 LA-MMTEEEDD---------DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred HH-hcCCcccc---------hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 22 22211111 45554 1111111 11222334444555555432 2346788999999999999999999
Q ss_pred HHHHHHhhhhhcCC---CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 001247 363 VAVICDVACHALNS---IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1115)
Q Consensus 363 V~~i~~la~~~l~~---v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~ 412 (1115)
..+++.++.-..+. .=++++..+..-+.|-++.||-.|.+.+|++=-...
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~ 421 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ 421 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc
Confidence 99999887533222 223567788899999999999999999998866543
No 113
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=61.99 E-value=49 Score=40.67 Aligned_cols=130 Identities=17% Similarity=0.141 Sum_probs=91.1
Q ss_pred cCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHh------cccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHH
Q 001247 272 LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLK------RLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 345 (1115)
Q Consensus 272 ~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~------R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~ 345 (1115)
..-++.+|..+..-+|.-.+- +|+.|..-++ =..|.+..||...++-...+...+|..+-..+..+
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~l--------vP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGL--------VPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhc--------chHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 455788999999999877753 3444332111 25799999999999999998888887554455555
Q ss_pred HHHHH-----cCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh---HHHHHHHHHHHHHHHhh
Q 001247 346 ALCDR-----LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL---VKRYTMERLADIFRGCC 412 (1115)
Q Consensus 346 ~l~~r-----L~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~---VR~~Ai~~L~~ly~~~~ 412 (1115)
-+..| ..|.|= ||..+++..+.+ ..+..++.+-+-.+.-.|-|=++. +|.|+...++++-....
T Consensus 357 RFk~rILE~~r~D~d~-VRi~sik~l~~l--r~lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevi 428 (740)
T COG5537 357 RFKDRILEFLRTDSDC-VRICSIKSLCYL--RILGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVI 428 (740)
T ss_pred HHHHHHHHHHhhccch-hhHHHHHHHHHH--HHhcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 54444 578888 999999998854 444455555444555558888876 77788888777766643
No 114
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=61.61 E-value=33 Score=36.35 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 341 ~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
+.-++.+.+...++|..||..|++.+..+....+-+ |.+.+-++.-..-|....||+.|...+..+...|
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 445667777899999999999999998665544332 6677888888899999999999999999999987
No 115
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=59.65 E-value=1.3e+02 Score=36.48 Aligned_cols=191 Identities=15% Similarity=0.231 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhhcCCC-CCCCchH---HHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCCch---HH
Q 001247 75 LVATCICEITRITAPE-APYSDDV---LKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECD---EL 147 (1115)
Q Consensus 75 ~~acCl~dilRi~APd-aPy~~~~---lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~~~---~l 147 (1115)
|+.-|+.-++=++.-+ .||.+.- |..|++.+. ++|+||.|. +|+-|+++..=- .+++-+.+ .+
T Consensus 45 ylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~------kNPsnP~Fn--HylFEsi~~lir--~~~~~~~~~v~~~ 114 (435)
T PF03378_consen 45 YLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVS------KNPSNPRFN--HYLFESIGALIR--FVCEADPEAVSQF 114 (435)
T ss_dssp HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHH------TS---HHHH--HHHHHHHHHHHH--HS-GGGHH---HH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------hCCCCcchh--hhHHHHHHHHHH--hccCCChhHHHHH
Confidence 6666766666555544 5775532 333333222 357888765 678899986411 23332212 45
Q ss_pred HHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccc--cccH---HHHHHHHHhhc---CCCchHHHHHHHHHHHHhhhh
Q 001247 148 VNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--DIQE---DLLVILLSALG---RNKNDTARRLAMNVIEQCAGK 219 (1115)
Q Consensus 148 i~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~--~i~~---~~ld~il~~~~---~~~~~~a~~la~~v~~~~~~~ 219 (1115)
-..+|-.|-.+...| -.....+...||+.++|-.. .+|. +++..+++.-. +++-.+.-++-...+.+.+..
T Consensus 115 E~~L~P~f~~ILq~d-V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~ 193 (435)
T PF03378_consen 115 EEALFPPFQEILQQD-VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSF 193 (435)
T ss_dssp HHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchh
Confidence 555555555555433 24667777889998888765 5665 33344443221 111124456888888888775
Q ss_pred hh--H---HHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCch-hhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCC
Q 001247 220 LE--A---GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQ-ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP 293 (1115)
Q Consensus 220 l~--~---~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~-lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~ 293 (1115)
+. . .|-.-|.-.+.++. .+...++|+..+...+|. .+.+.+| ...+-++.|+=+++
T Consensus 194 i~~~~~l~~iLgvFQkLi~sk~----~D~~gF~LL~~iv~~~p~~~l~~yl~--------------~I~~lll~RLq~sk 255 (435)
T PF03378_consen 194 IVANNQLEPILGVFQKLIASKA----NDHYGFDLLESIVENLPPEALEPYLK--------------QIFTLLLTRLQSSK 255 (435)
T ss_dssp ----S-CHHHHHHHHHHHT-TT----CHHHHHHHHHHHHHHS-HHHHGGGHH--------------HHHHHHHHHHHHC-
T ss_pred hcchhhHHHHHHHHHHHHCCCC----cchHHHHHHHHHHHHCCHHHHHHHHH--------------HHHHHHHHHHhhCC
Confidence 52 1 22223444554431 233467888888888776 4555544 34556666665554
Q ss_pred C
Q 001247 294 G 294 (1115)
Q Consensus 294 ~ 294 (1115)
.
T Consensus 256 T 256 (435)
T PF03378_consen 256 T 256 (435)
T ss_dssp -
T ss_pred c
Confidence 3
No 116
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=58.71 E-value=4.6e+02 Score=32.86 Aligned_cols=303 Identities=16% Similarity=0.150 Sum_probs=166.6
Q ss_pred HHHHHHhcch--hhhcCCCcchHHHHHHH---HHHHHhhcCCCC--------CC------CchHHHHHHHHHHH-----h
Q 001247 53 QPFLNAIVQP--VLLKHQDKDVKLLVATC---ICEITRITAPEA--------PY------SDDVLKDIFQLIVG-----T 108 (1115)
Q Consensus 53 ~~~~~~L~~~--~lL~h~d~~Vr~~~acC---l~dilRi~APda--------Py------~~~~lkdif~l~~~-----~ 108 (1115)
+|....+++. ++|+||.++||.-.|-- |+-|+.-|.-.+ -| ..+.|--|.+.+-. -
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 4556667766 78999999999876543 333333222111 11 01234344433322 2
Q ss_pred ccCCCCCCCCChhhHHHHHHHH------HhhhhhhhhccCCch-HHHHHHHHHHHHhhc--CCChhcHHHHHHHHHHHHh
Q 001247 109 FSGLKDTGGPSFGRRVVILETL------AKYRSCVVMLDLECD-ELVNEMYSTFFAVAS--DDHPESVLSSMQTIMIVLL 179 (1115)
Q Consensus 109 ~~~L~d~~~~~~~~~~~lLe~l------a~vks~vl~~dl~~~-~li~~lF~~~~~~v~--~~~~~~v~~~m~~Il~~vI 179 (1115)
|+.+..|-+.-.+.-.-||.+= ..|+..-.+|+...+ -=..+--+.+|.++. ..+.+.+...-..-+.-+
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I- 757 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCI- 757 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH-
Confidence 4455555555555555566543 234444456665422 223445556666653 235555555554444332
Q ss_pred cccccccHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHHHH---hhcCCCCCC----CCcchHHHH-HHH
Q 001247 180 EESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVS---SMSGDSRPG----HSHIDYHEV-IYD 251 (1115)
Q Consensus 180 ~e~~~i~~~~ld~il~~~~~~~~~~a~~la~~v~~~~~~~l~~~i~~~~~~---~l~~~~~~~----~~~~~~h~l-i~e 251 (1115)
.+. -=|+++|+.+|++++-+.. -.++|..-+=.+-.-.+.-|+= ++.+=..+. ...++++-. ..-
T Consensus 758 s~a-iGPqdvL~~LlnnLkvqeR------q~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 758 SRA-IGPQDVLDILLNNLKVQER------QQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred Hhh-cCHHHHHHHHHhcchHHHH------HhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHH
Confidence 221 2489999999998853211 1122222222121222222321 111101111 112344433 334
Q ss_pred HHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCC-CCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHH
Q 001247 252 VYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1115)
Q Consensus 252 l~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~-~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~i 330 (1115)
+.+.+-+-+.+..|.||+-|...|...|+.|..++-.+--.. |.--....=.+.+-..--.-|.+|.|=..+-+....+
T Consensus 831 ig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~ 910 (975)
T COG5181 831 IGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESF 910 (975)
T ss_pred HHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHH
Confidence 677788999999999999999999999999999998887553 2111112222333333344578888877766665543
Q ss_pred HhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHH
Q 001247 331 LLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVIC 367 (1115)
Q Consensus 331 l~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~ 367 (1115)
-..-. ..-+.+++..=|.-|--+||.+-+.++.
T Consensus 911 ~~~lg----~g~~m~Yv~qGLFHPs~~VRk~ywtvyn 943 (975)
T COG5181 911 ATVLG----SGAMMKYVQQGLFHPSSTVRKRYWTVYN 943 (975)
T ss_pred HHHhc----cHHHHHHHHHhccCchHHHHHHHHHHHh
Confidence 22111 2357889999999999999988666554
No 117
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=56.56 E-value=1.4e+02 Score=37.16 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=52.8
Q ss_pred CchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCC
Q 001247 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 353 (1115)
Q Consensus 274 e~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D 353 (1115)
.+.....+|-+.+.+-|.. |.+--...+++.+.=..|-++.||+..++..+.+-..+|+ ..+.|.+.|...|.
T Consensus 34 g~~k~K~Laaq~I~kffk~----FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~--~v~kvaDvL~QlL~- 106 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKH----FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE--HVSKVADVLVQLLQ- 106 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHhh----ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH--HHhHHHHHHHHHHh-
Confidence 4566777888888888864 5555567788888888888888888888888887776664 35677777777666
Q ss_pred chhHHHHHHH
Q 001247 354 FDENVRKQVV 363 (1115)
Q Consensus 354 ~DekVR~aaV 363 (1115)
+||.+=..+|
T Consensus 107 tdd~~E~~~v 116 (556)
T PF05918_consen 107 TDDPVELDAV 116 (556)
T ss_dssp ---HHHHHHH
T ss_pred cccHHHHHHH
Confidence 5555444443
No 118
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.30 E-value=75 Score=36.26 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=119.0
Q ss_pred hHHHHHHHHHhhCchhhhh----hhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhH
Q 001247 244 DYHEVIYDVYRCSPQILSG----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 319 (1115)
Q Consensus 244 ~~h~li~el~~~~P~lL~~----Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~V 319 (1115)
+....|+.|-.+.|+.|.+ ||.++-.++++-.-.+=..|+.++|+||+.-+.-..+.-.++-...|+|..+-..=|
T Consensus 107 dgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 107 DGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 4567788888888876654 999999999999999999999999999998776666788888899999998888888
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC------CCCHHHHHHHHHhhccCC
Q 001247 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN------SIPVETVKLVAERLRDKS 393 (1115)
Q Consensus 320 R~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~------~v~~~~l~~l~eR~rDKk 393 (1115)
|...-++.-... +|-. ..-++..|.-.+.-...+||..+...+.... ..+. ....++...+++-++||=
T Consensus 187 reda~kAL~aMV-~~vt---p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v-~rl~v~~~~~~~~~dl~~a~~~~~~d~L 261 (334)
T KOG2933|consen 187 REDAEKALVAMV-NHVT---PQKLLRKLIPILQHSNPRVRAKAALCFSRCV-IRLGVLPVLLQGSCDLSRAAQEQGSDKL 261 (334)
T ss_pred HHHHHHHHHHHH-hccC---hHHHHHHHHHHHhhhchhhhhhhhccccccc-eeccccchhhHhHHHHHHHHHhhhcccc
Confidence 887777765533 3322 3467888888888999999998654332111 1111 123356678999999999
Q ss_pred hhHHHHHH---HHHHHHHHH
Q 001247 394 VLVKRYTM---ERLADIFRG 410 (1115)
Q Consensus 394 ~~VR~~Ai---~~L~~ly~~ 410 (1115)
+.+|+.|= ..+...|+.
T Consensus 262 p~~~~~a~~~~~~~~~v~~~ 281 (334)
T KOG2933|consen 262 PELREAARFVRLELKEVLKT 281 (334)
T ss_pred cccccchhHHHHhHHHHHHH
Confidence 99995544 444445554
No 119
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=56.19 E-value=79 Score=33.53 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=73.0
Q ss_pred ccCCchHHHHHHHHHHHHhhcCCCC-------------Ch-----------hhhcHHHHHHHHhcccCCChhHHHHHHHH
Q 001247 271 LLTDQLDTRLKAVGLVGDLFAVPGS-------------AN-----------NEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1115)
Q Consensus 271 L~se~~~~R~~At~~lg~m~s~~~~-------------~~-----------~~~~~~~~~~fL~R~~D~s~~VR~~~v~~ 326 (1115)
+...+..+|..|..++.-|+.+... .| .+-|..+.... -...++.+=.+.+++
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L---~~E~~~~~l~q~lK~ 125 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLAL---QAEKSPPVLTQLLKC 125 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHH---hcccccHHHHHHHHH
Confidence 4567899999999999999987521 11 23444444443 245567788899999
Q ss_pred hHHHHhcCCCC----CChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001247 327 VKSCLLTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1115)
Q Consensus 327 ~~~il~~~~~~----~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1115)
....+.+.|.. +...++++.+..++...|..||.++.-+++.+..
T Consensus 126 la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 126 LAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 99888888864 3456778899999999999999999888876543
No 120
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=55.70 E-value=3e+02 Score=35.65 Aligned_cols=139 Identities=21% Similarity=0.231 Sum_probs=102.4
Q ss_pred hhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhc-CCCCCC
Q 001247 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-DPSRAD 339 (1115)
Q Consensus 261 ~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~-~~~~~~ 339 (1115)
..|+|.+.+-+..|...+|..|++.++.+++--..+. ..+......++.-..|.+..||-...+....+-.. .|+. .
T Consensus 275 s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~-~ 352 (759)
T KOG0211|consen 275 SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA-T 352 (759)
T ss_pred hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc-C
Confidence 3466777776677789999999999998887543322 77788889999999999999998877776653321 1222 1
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhh-h---cCCCCH-HHHHHHHHhhccCChhHHHHHH
Q 001247 340 APQILTALCDRLLDFDENVRKQVVAVICDVACH-A---LNSIPV-ETVKLVAERLRDKSVLVKRYTM 401 (1115)
Q Consensus 340 ~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~-~---l~~v~~-~~l~~l~eR~rDKk~~VR~~Ai 401 (1115)
..+.......-+.|..+.||.++-.-+..+++. + .-.++. ..+-.+-.-+-|....||....
T Consensus 353 ~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a 419 (759)
T KOG0211|consen 353 RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALA 419 (759)
T ss_pred cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHh
Confidence 236778888899999999999998888877762 2 133333 3567888889999999887643
No 121
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=55.22 E-value=1.6e+02 Score=32.90 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=66.2
Q ss_pred cHHHHHHHHhh-ccccchHhHHHHHHHhhcchHhhhh-cccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCc-cchH
Q 001247 646 TEEELVNLLKE-ENEIIKEGILHVLAKAGGTIREQLA-ATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDG-LKSL 722 (1115)
Q Consensus 646 ~~~~L~~~l~~-~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~~l~~~L~~la~~Gtp~~AK~Av~~L~~~~~~~~-~~~~ 722 (1115)
+.+.|+.+|+. ++|.+.+.++-++.+.+.+ +.+.. -.+.+-++.+.++--.++|+.-..|..+|..++.+.+ ....
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 35788888886 4666778888888876643 11111 1122457778888888889888889999986655443 2234
Q ss_pred HHHHHHHHHhhhhc-CCCchHHHHHHHHHhhc
Q 001247 723 SVLYKRLVDMLEEK-THLPAVLQSLGCIAQTA 753 (1115)
Q Consensus 723 ~~l~~~l~~~l~~~-~~~~~~L~sLa~ia~~~ 753 (1115)
+..+..+++.+-.. .+.+.-++.|..+..+.
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt 123 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT 123 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC
Confidence 44555555554322 24455566666666653
No 122
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=54.78 E-value=2.6e+02 Score=34.90 Aligned_cols=95 Identities=21% Similarity=0.164 Sum_probs=54.6
Q ss_pred CchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCC
Q 001247 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1115)
Q Consensus 256 ~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~ 335 (1115)
.|..+....|.++.. ..-...+|..|+..|.++-... -....+-+|.-|+++- .+++||++.+-.. +.++|
T Consensus 475 ~~~~i~~l~~~l~~~-~~~~~~iR~~Av~Alr~~a~~~---p~~v~~~l~~i~~n~~--e~~EvRiaA~~~l---m~t~P 545 (574)
T smart00638 475 HPSSIKVLEPYLEGA-EPLSTFIRLAAILALRNLAKRD---PRKVQEVLLPIYLNRA--EPPEVRMAAVLVL---METKP 545 (574)
T ss_pred ChhHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHhC---chHHHHHHHHHHcCCC--CChHHHHHHHHHH---HhcCC
Confidence 555555566666521 2234678888888888764321 1244456677776555 4567888766553 45567
Q ss_pred CCCChHHHHHHHHHHcCCchhHHHHHH
Q 001247 336 SRADAPQILTALCDRLLDFDENVRKQV 362 (1115)
Q Consensus 336 ~~~~~~~l~~~l~~rL~D~DekVR~aa 362 (1115)
+.. .+-......-.|++..|+..+
T Consensus 546 ~~~---~l~~ia~~l~~E~~~QV~sfv 569 (574)
T smart00638 546 SVA---LLQRIAELLNKEPNLQVASFV 569 (574)
T ss_pred CHH---HHHHHHHHHhhcCcHHHHHHh
Confidence 532 233333333457778887654
No 123
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.50 E-value=3.6e+02 Score=32.85 Aligned_cols=115 Identities=14% Similarity=0.069 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhh
Q 001247 339 DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLR 414 (1115)
Q Consensus 339 ~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v----~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~ 414 (1115)
.-..+...+..|..||+.++|..|+..++.++...++.+ +.-+-.-+....-|-+.+|--+||++|..+-.....
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~- 333 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN- 333 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh-
Confidence 446788899999999999999999999998887655433 222223344455555689999999999998776422
Q ss_pred ccCCCcchhhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCC
Q 001247 415 NFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTG 458 (1115)
Q Consensus 415 ~~~~~~~~~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~ 458 (1115)
.....-+-.|--++-..+=..+.+-+.--.++|+.|.|+.
T Consensus 334 ----~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 334 ----DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred ----cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 1111223333333333332222222355666777777653
No 124
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.11 E-value=6.4e+02 Score=33.37 Aligned_cols=241 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhhcCC-ChhcHHHHHHHHHHHHh-----------cccccccHHHHHHHHHhhcCCCch--HHHHHH
Q 001247 144 CDELVNEMYSTFFAVASDD-HPESVLSSMQTIMIVLL-----------EESEDIQEDLLVILLSALGRNKND--TARRLA 209 (1115)
Q Consensus 144 ~~~li~~lF~~~~~~v~~~-~~~~v~~~m~~Il~~vI-----------~e~~~i~~~~ld~il~~~~~~~~~--~a~~la 209 (1115)
+++++..+++-+=..|+.+ .=+.+.+++..|+..|| +--+.=|.+-+..=+.-+....+. +|..+-
T Consensus 317 s~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l 396 (1010)
T KOG1991|consen 317 SDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFL 396 (1010)
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHH
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhc------CCCCCCCCcchHHHHHHHHHhh----Cc--hhhhh-hhhhhhccccCCch
Q 001247 210 MNVIEQCAGKLEAGIKQFLVSSMS------GDSRPGHSHIDYHEVIYDVYRC----SP--QILSG-VVPYLTGELLTDQL 276 (1115)
Q Consensus 210 ~~v~~~~~~~l~~~i~~~~~~~l~------~~~~~~~~~~~~h~li~el~~~----~P--~lL~~-Vip~Le~eL~se~~ 276 (1115)
-.+|.+-..--=|-+-+|..+++. ...........+...+-.|..+ +| +.+.. +.+.+-.++++.--
T Consensus 397 ~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g 476 (1010)
T KOG1991|consen 397 TTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYG 476 (1010)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchh
Q ss_pred HHHHHHHHHHHHhhcCC---CCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCC-----hHHHHHHHH
Q 001247 277 DTRLKAVGLVGDLFAVP---GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-----APQILTALC 348 (1115)
Q Consensus 277 ~~R~~At~~lg~m~s~~---~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~-----~~~l~~~l~ 348 (1115)
-.|..|..++|+.=+.. ..++.+.+..+.+++++ |.+-+||++-+-+...++.+.+..++ ...+.+.|.
T Consensus 477 ~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~---d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL 553 (1010)
T KOG1991|consen 477 YLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN---DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELL 553 (1010)
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc---CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHH
Q ss_pred HHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 001247 349 DRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAE 387 (1115)
Q Consensus 349 ~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~e 387 (1115)
.-.++++-.+=..+.+.+..--.+-+.-+-.++..++++
T Consensus 554 ~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~ 592 (1010)
T KOG1991|consen 554 KLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAE 592 (1010)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
No 125
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.26 E-value=1.3e+02 Score=36.84 Aligned_cols=169 Identities=17% Similarity=0.173 Sum_probs=105.3
Q ss_pred hhhhccccCCchHHHHHHHHHHHHhhcCCC---CChhhh--cHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC-
Q 001247 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPG---SANNEQ--FHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA- 338 (1115)
Q Consensus 265 p~Le~eL~se~~~~R~~At~~lg~m~s~~~---~~~~~~--~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~- 338 (1115)
+..-..+.|++.+.+..|++.+-+++|... .+.+-. -=+.+-.||+| |..|.+|.+..=+..+|-.-..+..
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~--~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR--DDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc--CCChhHHHHHHHHHHHHhcCchhhcc
Confidence 334444668999999999999999999753 121111 13456677774 4456677666656656554322210
Q ss_pred --ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHHHh
Q 001247 339 --DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAERL-RDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 339 --~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~----v~~~~l~~l~eR~-rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
.....+..|...+..+++.||-.||-+++.+|-.+... ++-..+..|..-+ .+.+.+..+.++=+|+++.+.-
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 11234567889999999999999999999988655331 2223333333333 3333467777788888877752
Q ss_pred hhhccCCCcchhhcccchHHHhhhhhccC
Q 001247 412 CLRNFNGSINQNEFEWIPGKILRCLYDKD 440 (1115)
Q Consensus 412 ~~~~~~~~~~~~~~~wIP~~il~~~y~~d 440 (1115)
+.+...+.+.-|=..|+.+.|..|
T Consensus 227 -----~P~P~~~~v~~iLp~L~~ll~~~D 250 (514)
T KOG0166|consen 227 -----NPSPPFDVVAPILPALLRLLHSTD 250 (514)
T ss_pred -----CCCCcHHHHHHHHHHHHHHHhcCC
Confidence 123334556666667777777766
No 126
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.16 E-value=73 Score=39.96 Aligned_cols=100 Identities=23% Similarity=0.230 Sum_probs=75.4
Q ss_pred CchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCC-CChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC
Q 001247 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD 334 (1115)
Q Consensus 256 ~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~-~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~ 334 (1115)
.|+++...+-+|-.-|.+-+..+|-+|.+.+.+|.+... .+..+.|.++--.-|+ .+++++||...|+. |-.-
T Consensus 323 e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLk--terDvSirrravDL----LY~m 396 (938)
T KOG1077|consen 323 EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLK--TERDVSIRRRAVDL----LYAM 396 (938)
T ss_pred cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhc--cccchHHHHHHHHH----HHHH
Confidence 689999999999999999999999999999999998743 4556777776655554 46677888877765 4444
Q ss_pred CCCCChHHHHHHHHHHcCCchhHHHHH
Q 001247 335 PSRADAPQILTALCDRLLDFDENVRKQ 361 (1115)
Q Consensus 335 ~~~~~~~~l~~~l~~rL~D~DekVR~a 361 (1115)
.+.+.+.+|+..+..-|--.|-.+|-+
T Consensus 397 cD~~Nak~IV~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 397 CDVSNAKQIVAELLQYLETADYSIREE 423 (938)
T ss_pred hchhhHHHHHHHHHHHHhhcchHHHHH
Confidence 455567788877777666566555554
No 127
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=50.09 E-value=2.3e+02 Score=32.59 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=92.8
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcC--CCCChhhhcHHHHHHHHhcccCCC--hhHHHHHHHHhHHHHhc-CCCC
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAV--PGSANNEQFHSVFSEFLKRLTDRI--VAVRMSVLEHVKSCLLT-DPSR 337 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~--~~~~~~~~~~~~~~~fL~R~~D~s--~~VR~~~v~~~~~il~~-~~~~ 337 (1115)
++.+++.-++......+.+|.+++|-+.-. +|.+-..-|..+...+..-..|.+ +.+|..++.+.+-+-.- -.+.
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 455666667777778899999999977544 344545555555555555555654 57898998776653331 1222
Q ss_pred CChHHHHHHHH---HH-cC--C---------chhHHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHhhccCChhHHH
Q 001247 338 ADAPQILTALC---DR-LL--D---------FDENVRKQVVAVICDVACHA----LNSIPVETVKLVAERLRDKSVLVKR 398 (1115)
Q Consensus 338 ~~~~~l~~~l~---~r-L~--D---------~DekVR~aaV~~i~~la~~~----l~~v~~~~l~~l~eR~rDKk~~VR~ 398 (1115)
++..++++.+. .. .. | ++..|..+|+.+.+=+.... +...-.+.+..+.+.+--....||.
T Consensus 167 ~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRi 246 (309)
T PF05004_consen 167 EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRI 246 (309)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 23332334444 11 11 2 13568888888877665322 1122223455667777777899999
Q ss_pred HHHHHHHHHHHHhh
Q 001247 399 YTMERLADIFRGCC 412 (1115)
Q Consensus 399 ~Ai~~L~~ly~~~~ 412 (1115)
.|=..+|-+|-...
T Consensus 247 AAGEaiAll~E~~~ 260 (309)
T PF05004_consen 247 AAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999864
No 128
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=49.95 E-value=6.1e+02 Score=31.69 Aligned_cols=261 Identities=19% Similarity=0.196 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHH
Q 001247 23 KDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIF 102 (1115)
Q Consensus 23 ~~~Ll~rL~~l~~~L~~~~Q~~~~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdif 102 (1115)
.++-++.|..+..-.+...|+ .++...++..+++-+ |.+.--.++.
T Consensus 3 v~~~~~~~~s~~~if~k~Q~s-~aGhrk~~a~l~~~~---------------------------------t~~~f~~~fl 48 (885)
T COG5218 3 VSETVSSLESMQLIFNKIQQS-SAGHRKSLAELMEML---------------------------------TAHEFSEEFL 48 (885)
T ss_pred hhHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH---------------------------------HHHhhHHHHH
Confidence 455667777777777776554 234444444444433 1111122333
Q ss_pred HHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCC-chHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcc
Q 001247 103 QLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEE 181 (1115)
Q Consensus 103 ~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~-~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e 181 (1115)
+..-..++-=++++.| .+-...|.++-++ .|.|.| ..+++...|++.+..+ +..-++|..-.+.|+.-+.+-
T Consensus 49 r~vn~IL~~Kk~~si~--dRil~fl~~f~~Y----~~~~dpeg~~~V~~~~~h~lRg~-eskdk~VR~r~lqila~~~d~ 121 (885)
T COG5218 49 RVVNTILACKKNPSIP--DRILSFLKRFFEY----DMPDDPEGEELVAGTFYHLLRGT-ESKDKKVRKRSLQILALLSDV 121 (885)
T ss_pred HHHHHhhccccCCCcH--HHHHHHHHHHHHh----cCCCChhhhHHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHHHh
Confidence 3333333322334444 3444444444332 466766 6899999999988765 445578999999999888777
Q ss_pred cccccHHHHHHHHHhhcC---CCchHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCch
Q 001247 182 SEDIQEDLLVILLSALGR---NKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQ 258 (1115)
Q Consensus 182 ~~~i~~~~ld~il~~~~~---~~~~~a~~la~~v~~~~~~~l~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~ 258 (1115)
-..|...+-..++..+.. .+..+.+.=|.. +-.||.++- + +...+.-.++..+-+..|+
T Consensus 122 v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~------------~L~~~Qe~~-~-----neen~~~n~l~~~vqnDPS 183 (885)
T COG5218 122 VREIDEVLANGLLEKLSERLFDREKAVRREAVK------------VLCYYQEME-L-----NEENRIVNLLKDIVQNDPS 183 (885)
T ss_pred cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHH------------HHHHHHhcc-C-----ChHHHHHHHHHHHHhcCcH
Confidence 666766666666655421 111111111111 112333321 1 1233444466655555553
Q ss_pred hhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC
Q 001247 259 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA 338 (1115)
Q Consensus 259 lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~ 338 (1115)
.++|..|.- +++. -++|+-.-|.|..|.+...|.-+-+.+-.=+---.+.+
T Consensus 184 -----------------~EVRr~all----ni~v--------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls 234 (885)
T COG5218 184 -----------------DEVRRLALL----NISV--------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS 234 (885)
T ss_pred -----------------HHHHHHHHH----Heee--------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc
Confidence 567777642 2222 14467788999999999999876655422110000111
Q ss_pred ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhh
Q 001247 339 DAPQILTALCDRLLDFDENVRKQVVAVICDVACH 372 (1115)
Q Consensus 339 ~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~ 372 (1115)
..+.|. .+.--|.|-|..||-|++.++..-...
T Consensus 235 i~kri~-l~ewgl~dRe~sv~~a~~d~ia~~w~~ 267 (885)
T COG5218 235 IDKRIL-LMEWGLLDREFSVKGALVDAIASAWRI 267 (885)
T ss_pred ccceeh-hhhhcchhhhhhHHHHHHHHHHHHhcc
Confidence 111222 445568999999999999988754433
No 129
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=49.36 E-value=1.8e+02 Score=36.44 Aligned_cols=188 Identities=16% Similarity=0.213 Sum_probs=102.4
Q ss_pred HHHHHHhc-cCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhc
Q 001247 102 FQLIVGTF-SGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180 (1115)
Q Consensus 102 f~l~~~~~-~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~ 180 (1115)
|.-++.+| ......+.+.-.+-..+| ....+||-.+|-.|..|+..+++.-.- +.++.+.......+..+..
T Consensus 31 Y~~L~~~l~~~~~~~d~~~~~~l~~~L---~~L~~~Vs~Ld~~~~~LV~ail~~~W~----~~~~~~v~~y~~Fl~~Lvs 103 (563)
T PF05327_consen 31 YDELVEQLSDPSESKDAISVSQLIRWL---KALSSCVSLLDSSCKQLVEAILSLNWL----GRDEDFVEAYIQFLINLVS 103 (563)
T ss_dssp HHHHHHHHHS-TT-TTS--HHHHHHHH---HHHHHGGGGG-SCCHHHHHHHHT-TGG----GS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCcccccHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHHcCCCC----CCCHHHHHHHHHHHHHHHH
Confidence 44445555 333333343333444444 444567777776788888888777331 2355677777777888877
Q ss_pred ccccccHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCC--CCCCcchHHHHHHHHHhhCch
Q 001247 181 ESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR--PGHSHIDYHEVIYDVYRCSPQ 258 (1115)
Q Consensus 181 e~~~i~~~~ld~il~~~~~~~~~~a~~la~~v~~~~~~~l~~~i~~~~~~~l~~~~~--~~~~~~~~h~li~el~~~~P~ 258 (1115)
....--..+++.+..+|.+......-. .+... ......+.|.++..|-+++|.
T Consensus 104 a~~~yl~~vl~~LV~~f~p~~~~~~~~-------------------------~~~~~~~~~~~~~~vH~~L~~Il~lvP~ 158 (563)
T PF05327_consen 104 AQPKYLSPVLSMLVKNFIPPPSSIAEW-------------------------PGCPPEKRREIYERVHDALQKILRLVPT 158 (563)
T ss_dssp H-GGGHHHHHHHHHHGGGS-HHHHHH----------------------------------------HHHHHHHHHHH-GG
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccc-------------------------chhhhhhhhhhHHHHHHHHHHHHHHcCC
Confidence 777777888999988887643211000 11110 111233689999999999999
Q ss_pred hhhhhhhhhhccccCCchHHHHHHH--HHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHH
Q 001247 259 ILSGVVPYLTGELLTDQLDTRLKAV--GLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1115)
Q Consensus 259 lL~~Vip~Le~eL~se~~~~R~~At--~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~ 325 (1115)
....++|.|....=.-..+.+...+ +-+=++.... ..--.++|..-+.|...++++|.+.|=+
T Consensus 159 s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~----P~L~~~Il~lIi~rLi~iDVeiq~~~dd 223 (563)
T PF05327_consen 159 SPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYC----PELRSDILSLIIERLIKIDVEIQIELDD 223 (563)
T ss_dssp GHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcch----HHHHHHHHHHHHHHHHHHhcccccCccc
Confidence 9999998888777655544443332 2222233221 2333567777777777777766655533
No 130
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=49.31 E-value=4.2e+02 Score=32.17 Aligned_cols=166 Identities=13% Similarity=0.161 Sum_probs=100.3
Q ss_pred ChhcHHHHHHHHHHHHhcccccccH----HHHHHHHHhhcCCCc----hHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcC
Q 001247 163 HPESVLSSMQTIMIVLLEESEDIQE----DLLVILLSALGRNKN----DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSG 234 (1115)
Q Consensus 163 ~~~~v~~~m~~Il~~vI~e~~~i~~----~~ld~il~~~~~~~~----~~a~~la~~v~~~~~~~l~~~i~~~~~~~l~~ 234 (1115)
...+-...+..|+.-+-+.+.+|.. ++|..+++-+...+. .-|.++-..+|++-+++|..+.---..-++..
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 3455667788888888888888888 455555555555333 26677777777887887766644333332221
Q ss_pred --CCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCC-ChhhhcHHHHHHHHhc
Q 001247 235 --DSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKR 311 (1115)
Q Consensus 235 --~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~-~~~~~~~~~~~~fL~R 311 (1115)
+..+.......-+.+.-+..+.|..=..||-.+ +..+|++.=.++++.+.+||..-.. .+...-|++-=.++.-
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~---Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqa 456 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPL---ILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQA 456 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhH---HhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHH
Confidence 111111111234455566666665433333222 2337788888899999999986542 2334445566666666
Q ss_pred ccCCChhHHHHHHHHhHHHH
Q 001247 312 LTDRIVAVRMSVLEHVKSCL 331 (1115)
Q Consensus 312 ~~D~s~~VR~~~v~~~~~il 331 (1115)
+.-.|..||..+|=+.-.++
T Consensus 457 y~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 457 YDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hcCchHHhhhhHHHhHHHHH
Confidence 77778888887777766544
No 131
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.72 E-value=9.5e+02 Score=33.54 Aligned_cols=313 Identities=15% Similarity=0.208 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHHHhccCCCCCCCCChhhH-----HHHHHHHHhhhhhhhhccCCchHH
Q 001247 74 LLVATCICEITRITAPEAPYSD-DVLKDIFQLIVGTFSGLKDTGGPSFGRR-----VVILETLAKYRSCVVMLDLECDEL 147 (1115)
Q Consensus 74 ~~~acCl~dilRi~APdaPy~~-~~lkdif~l~~~~~~~L~d~~~~~~~~~-----~~lLe~la~vks~vl~~dl~~~~l 147 (1115)
.-.+.|=.|-.++ -|+-|+-. ..=.+.+..|...|..+-+..+|.+.|. ..+...++.-+..++++. ++
T Consensus 788 ~~~~~~~~ds~~l-e~~~~~~~~~~n~~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~----eI 862 (1702)
T KOG0915|consen 788 INYTALGTDSNFL-EEKTDTEEDKVNDTRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLK----EI 862 (1702)
T ss_pred hhhhhcccchhhc-ccccchhhcccCCccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccH----HH
Confidence 3344455566666 33333321 1234456667777766666678887775 334455666666666543 33
Q ss_pred HHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccc-cccHHHHHHHHHhhcC--------------------CCch--H
Q 001247 148 VNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE-DIQEDLLVILLSALGR--------------------NKND--T 204 (1115)
Q Consensus 148 i~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~-~i~~~~ld~il~~~~~--------------------~~~~--~ 204 (1115)
. +-|.+++. -++++.+.|.+ .=|+-|-+=++ ..-.++++-++..+.. ++++ .
T Consensus 863 ~-~aF~~~Ls-d~dEf~QDvAs---rGlglVYelgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg 937 (1702)
T KOG0915|consen 863 Q-EAFSHLLS-DNDEFSQDVAS---RGLGLVYELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGG 937 (1702)
T ss_pred H-HHHHHHhc-ccHHHHHHHHh---cCceEEEecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCC
Confidence 3 55555553 22222222211 11111111111 1333344444433311 1111 1
Q ss_pred HHHHHHHHHHHhhhhhhHHH-HHHHHHhhc-CCCCCCC---------------Ccch--HHHHHHHHHhhCchhhhhhhh
Q 001247 205 ARRLAMNVIEQCAGKLEAGI-KQFLVSSMS-GDSRPGH---------------SHID--YHEVIYDVYRCSPQILSGVVP 265 (1115)
Q Consensus 205 a~~la~~v~~~~~~~l~~~i-~~~~~~~l~-~~~~~~~---------------~~~~--~h~li~el~~~~P~lL~~Vip 265 (1115)
.-.-=+++|+-.+|-=||-+ -+|++ ... ...-.++ .... .-.||-.|+|+-
T Consensus 938 ~isTYKELc~LASdl~qPdLVYKFM~-LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~--------- 1007 (1702)
T KOG0915|consen 938 KISTYKELCNLASDLGQPDLVYKFMQ-LANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQ--------- 1007 (1702)
T ss_pred cchHHHHHHHHHhhcCChHHHHHHHH-HhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhc---------
Confidence 22233689999888888876 44543 211 1000000 0111 234555555542
Q ss_pred hhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC---CChHH
Q 001247 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAPQ 342 (1115)
Q Consensus 266 ~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~---~~~~~ 342 (1115)
=..+..++..-|..-+-+..++......-+.+++++.|.-..++.=.||.+..-+..++|..+|-. +...+
T Consensus 1008 ------yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpe 1081 (1702)
T KOG0915|consen 1008 ------YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPE 1081 (1702)
T ss_pred ------cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 246778888878888888887654444556899999999999999999999999999999887752 33468
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC------CC-CHHHHHHH-----HHhhccCChhHHHHHHHHHHHHHHH
Q 001247 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALN------SI-PVETVKLV-----AERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 343 l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~------~v-~~~~l~~l-----~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
++.++-+-.=|-.|.||.++=++...+++-... .. ..+.+..+ .+-+--|-.+||+-++.++.++-+.
T Consensus 1082 lw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Ks 1161 (1702)
T KOG0915|consen 1082 LWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKS 1161 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHh
Confidence 888888888899999999987766555542211 11 12344432 3344456679999999999999998
Q ss_pred hh
Q 001247 411 CC 412 (1115)
Q Consensus 411 ~~ 412 (1115)
+-
T Consensus 1162 sg 1163 (1702)
T KOG0915|consen 1162 SG 1163 (1702)
T ss_pred ch
Confidence 63
No 132
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=47.24 E-value=6.7e+02 Score=31.36 Aligned_cols=187 Identities=14% Similarity=-0.010 Sum_probs=114.2
Q ss_pred HHHHHHhhCchhhhhhhhhhhccccCC-chHHHHHHHHHHHHhhcCCCCChhh-hcHHHHHHHHhcccCCChhHHHHHHH
Q 001247 248 VIYDVYRCSPQILSGVVPYLTGELLTD-QLDTRLKAVGLVGDLFAVPGSANNE-QFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1115)
Q Consensus 248 li~el~~~~P~lL~~Vip~Le~eL~se-~~~~R~~At~~lg~m~s~~~~~~~~-~~~~~~~~fL~R~~D~s~~VR~~~v~ 325 (1115)
..--+.+..-+...+.+|-.|+-|.+. +...|-..+-+-|-+- .+. .-.+ .-...-..++.--.=.+++||.+...
T Consensus 41 ~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a-~~~-~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~ 118 (569)
T KOG1242|consen 41 GEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLA-FHL-QIVDPRPISIIEILLEELDTPSKSVQRAVST 118 (569)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHH-Hhc-cccCcchhHHHHHHHHhcCCCcHHHHHHHHH
Confidence 444456667778888899999999876 5666666666666432 211 1111 11223446777778899999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh--cCCCCHHHHHHHHHhhccCChhHHHHHHHH
Q 001247 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSIPVETVKLVAERLRDKSVLVKRYTMER 403 (1115)
Q Consensus 326 ~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~--l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~ 403 (1115)
+.+....+... ....++.+-+.+.+.=++-.=|..+-..+..+.... ....+...+.++..-.+|||..-|++ ...
T Consensus 119 ~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re-~~~ 196 (569)
T KOG1242|consen 119 CLPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNRE-AAL 196 (569)
T ss_pred HhhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHH-HHH
Confidence 98886554332 223466666666666666666777666666554422 23446678899999999999998888 333
Q ss_pred HHHHHHHhhhhccCCCcchhhcccchHHHhhhhhccCCC
Q 001247 404 LADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG 442 (1115)
Q Consensus 404 L~~ly~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~ 442 (1115)
++-... +...+ +....-+--+-..||.++++....
T Consensus 197 ~a~~~~--~~~Lg--~~~EPyiv~~lp~il~~~~d~~~~ 231 (569)
T KOG1242|consen 197 LAFEAA--QGNLG--PPFEPYIVPILPSILTNFGDKINK 231 (569)
T ss_pred HHHHHH--HHhcC--CCCCchHHhhHHHHHHHhhccchh
Confidence 333222 22222 211122333445567777776543
No 133
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.61 E-value=7.4e+02 Score=31.72 Aligned_cols=214 Identities=20% Similarity=0.203 Sum_probs=132.2
Q ss_pred cCC-chHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhc-C--CCchHHHHHHHHHHHHh
Q 001247 141 DLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG-R--NKNDTARRLAMNVIEQC 216 (1115)
Q Consensus 141 dl~-~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~i~~~~ld~il~~~~-~--~~~~~a~~la~~v~~~~ 216 (1115)
+++ .+|++..+|.+++... +...++|..-.+.|+.-+.++-..||.+|-+.|...+. + .+. ++-
T Consensus 75 q~d~e~DlV~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre-p~V---------- 142 (892)
T KOG2025|consen 75 QLDKEEDLVAGTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE-PNV---------- 142 (892)
T ss_pred ccCchhhHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC-chH----------
Confidence 444 4779999999988754 45668899999999999999999999999998876552 1 111 111
Q ss_pred hhhhhHHHH-HHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCC
Q 001247 217 AGKLEAGIK-QFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS 295 (1115)
Q Consensus 217 ~~~l~~~i~-~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~ 295 (1115)
++|..++ .+|.+ + +.+....+-.++..+-+..| +.++|..|.-. ++..
T Consensus 143 --RiqAv~aLsrlQ~----d--~~dee~~v~n~l~~liqnDp-----------------S~EVRRaaLsn----I~vd-- 191 (892)
T KOG2025|consen 143 --RIQAVLALSRLQG----D--PKDEECPVVNLLKDLIQNDP-----------------SDEVRRAALSN----ISVD-- 191 (892)
T ss_pred --HHHHHHHHHHHhc----C--CCCCcccHHHHHHHHHhcCC-----------------cHHHHHHHHHh----hccC--
Confidence 1111111 12222 2 22233445555554444444 57888887543 2221
Q ss_pred ChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC
Q 001247 296 ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1115)
Q Consensus 296 ~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~ 375 (1115)
++|+-.-++|..|.+..+|.-+-+.+-.=+ +--...+..-+--+..-|.|-++.||-|.+.++..-.....
T Consensus 192 ------nsTlp~IveRarDV~~anRrlvY~r~lpki--d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~- 262 (892)
T KOG2025|consen 192 ------NSTLPCIVERARDVSGANRRLVYERCLPKI--DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS- 262 (892)
T ss_pred ------cccchhHHHHhhhhhHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-
Confidence 346667899999999999988777654322 11111122233456667999999999999998875443332
Q ss_pred CCCHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHH
Q 001247 376 SIPVETVKLVAERLRDKS-VLVKRYTMERLADIFR 409 (1115)
Q Consensus 376 ~v~~~~l~~l~eR~rDKk-~~VR~~Ai~~L~~ly~ 409 (1115)
...+++. .+|+-=-+ ..|+..|++.|-+.-+
T Consensus 263 --dgni~El-L~~ldvsnss~vavk~lealf~~v~ 294 (892)
T KOG2025|consen 263 --DGNILEL-LERLDVSNSSEVAVKALEALFSGVR 294 (892)
T ss_pred --cccHHHH-HHHhccccchHHHHHHHHHHHHHHH
Confidence 2333332 35543333 4899999998877433
No 134
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=45.75 E-value=6.3e+02 Score=30.61 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=39.2
Q ss_pred CCCcchHHHHHHHHHHHHhhcCCC-CCCCchHH---HHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhh
Q 001247 67 HQDKDVKLLVATCICEITRITAPE-APYSDDVL---KDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKY 133 (1115)
Q Consensus 67 h~d~~Vr~~~acCl~dilRi~APd-aPy~~~~l---kdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~v 133 (1115)
.+..++.-|+-.-+.|+++- .|. +++--+.. +++|.-|+..+. ..+.+-....+++|..+...
T Consensus 65 ~~~~d~vqyvL~Li~dll~~-~~~~~~~f~~~~~~~~~~~~~fl~lL~---~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 65 IDKDDTVRYVLTLIDDMLQE-DDTRVKLFHDDALLKKKTWEPFFNLLN---RQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred cCcHHHHHHHHHHHHHHHHh-chHHHHHHHHHhhccccchHHHHHHHc---CCchhHHHHHHHHHHHHHhc
Confidence 45677999999999999996 222 12211111 456777776543 34555666677777776543
No 135
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=45.57 E-value=1.2e+02 Score=35.10 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=66.5
Q ss_pred HHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHc-CCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHH
Q 001247 319 VRMSVLEHVKSCLLTDPSRADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVK 397 (1115)
Q Consensus 319 VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL-~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR 397 (1115)
=|+...+....+ |.......+++++..-+ .+..|.+..+.+.+++.-...--..+|.++++.+..=+.|||+.||
T Consensus 3 ~r~~~~~~L~~l----~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 3 QRVLHASMLSSL----PSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred HHHHHHHHHHhC----CCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHH
Confidence 355555554432 22224667888777765 4699999999999998643333378899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001247 398 RYTMERLADIFR 409 (1115)
Q Consensus 398 ~~Ai~~L~~ly~ 409 (1115)
+--+..+|..+.
T Consensus 79 ~~w~~~~~~~~~ 90 (339)
T PF12074_consen 79 RAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHh
Confidence 999999999877
No 136
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=45.01 E-value=8.1e+02 Score=31.70 Aligned_cols=166 Identities=18% Similarity=0.187 Sum_probs=82.8
Q ss_pred HHHhhhhHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHhcCCCc---hHHHHHHHHHhh------hccccchhHHHHHHH
Q 001247 542 ILDQLKDANVWKILMNLLDSNTSFDQA-FTGRDDLLKILGAKHR---LYDFLSTLSMKC------SYLLFNKEHVKEILL 611 (1115)
Q Consensus 542 kf~~l~D~r~~~llk~~~~~~s~~~~~-~~a~~ellkkl~~~~~---~~~~~~~Ll~R~------s~~i~n~s~V~~Ll~ 611 (1115)
.-.+.+|+-++|++|.+...+...++. ..-...|.+.+.+... ..+.+-+|-.-. +-++-+-.-+|.|.+
T Consensus 461 ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~ 540 (708)
T PF05804_consen 461 RALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKD 540 (708)
T ss_pred HHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHH
Confidence 333568889999999998877444433 3334455555554322 334444432221 123334456677776
Q ss_pred HHHhhcccchhhhhHHHHHHHHHHHhh-----CCcCc-c-ccHHHHHHHHhhccccchHhHHHHHHHhhcchHhh-----
Q 001247 612 EVAAQKSSANAQFMQSCMDILGILARF-----SPLLL-G-GTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ----- 679 (1115)
Q Consensus 612 ~~~~~~~~~~~~~~~~a~~LL~~iS~~-----~P~lf-~-~~~~~L~~~l~~~~~~~~~~~L~~L~~~~~~~~~~----- 679 (1115)
.+... .... ....|....++.. +..++ + +-+..|++++....+ --+-++|+++-+...+...
T Consensus 541 ~L~~g-~~~d----Dl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h~~tr~~ 614 (708)
T PF05804_consen 541 LLKPG-ASED----DLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFHEETREV 614 (708)
T ss_pred HhCCC-CCCh----HHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcChHHHHH
Confidence 55321 1111 1222333223221 11122 2 346889999987543 2457899998776543221
Q ss_pred hhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 001247 680 LAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1115)
Q Consensus 680 ~~~~~~~l~~~L~~la~~Gtp~~AK~Av~~L~~~~ 714 (1115)
+- ........|-++.-..++.-+|.|=.+|..+.
T Consensus 615 ll-~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 615 LL-KETEIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred HH-hccchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11 01123344444444455566666666655443
No 137
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=44.54 E-value=40 Score=41.02 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=59.2
Q ss_pred cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCH-------------
Q 001247 313 TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV------------- 379 (1115)
Q Consensus 313 ~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~------------- 379 (1115)
+|+++-.|..=+-...-...-.. ...-+-.-|.--..|.++.||+|||-+++-+.|.+...++.
T Consensus 526 ~d~ds~lRy~G~fs~alAy~GTg---n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~tvelLs~shN~hV 602 (926)
T COG5116 526 YDKDSILRYNGVFSLALAYVGTG---NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVELLSESHNFHV 602 (926)
T ss_pred cCchHHhhhccHHHHHHHHhcCC---cchhHhhhheeecccCchHHHHHHHHheeeeEecCcchhhHHHHHhhhccchhh
Confidence 68888888765544432222111 11223334444589999999999999998776666554322
Q ss_pred ------------------HHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 380 ------------------ETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 380 ------------------~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
..+..|--.|.|-..=||+-||.++|-+--.+
T Consensus 603 R~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 603 RAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred hhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc
Confidence 11224455567777778888887777766553
No 138
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=44.50 E-value=1.9e+02 Score=33.29 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=71.6
Q ss_pred HHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHH
Q 001247 251 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1115)
Q Consensus 251 el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~i 330 (1115)
.|.-+.|.++.+++|-||+| +.+.=..+.+++-++-..-+.+ .-|..+|.+.+ .+|++|...+.++..-
T Consensus 131 ~L~p~l~~li~slLpGLede----~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~ii-----~sp~~Rl~al~~l~~~ 199 (307)
T PF04118_consen 131 ALRPCLKGLILSLLPGLEDE----GSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCII-----TSPSRRLGALNYLLRR 199 (307)
T ss_pred HHHHHHHHHHHHhccccccC----CchHHHHHHHHHHHHHHhcChh--HHHHHHHHHHh-----cCcchhHHHHHHHHHh
Confidence 56677888999999999985 2222233444455444332322 34577888887 5899999988887654
Q ss_pred HhcCC------C--------CCChHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 001247 331 LLTDP------S--------RADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1115)
Q Consensus 331 l~~~~------~--------~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~ 368 (1115)
+-... . ..+..-+++++...|.|.+.-|++.+..-+..
T Consensus 200 l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 200 LPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred CCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 43211 0 12234577999999999999999997776654
No 139
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=43.92 E-value=1e+03 Score=32.54 Aligned_cols=126 Identities=10% Similarity=0.029 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC-CChHHHHHHHHHHcCCchh
Q 001247 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-ADAPQILTALCDRLLDFDE 356 (1115)
Q Consensus 278 ~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~-~~~~~l~~~l~~rL~D~De 356 (1115)
.+..+.+.|-.++- .+++++...+.|..-.++.|-..+-.....++...+.. ....+++.-..-++.|++.
T Consensus 486 ~~~lgr~AL~nLL~--------~N~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~ 557 (1120)
T PF14228_consen 486 RHSLGRRALKNLLE--------HNPDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESS 557 (1120)
T ss_pred HHHHHHHHHHHHHH--------hhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcH
Confidence 33555555555543 44678888889888888888777777777777655432 2345777777778899999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 357 NVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 357 kVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
.||..|++-+..+....+..-..+-.....+.+.+|-+.|-+.+...+++-...-
T Consensus 558 eIR~~A~qLL~~Le~R~~~~s~~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~~ 612 (1120)
T PF14228_consen 558 EIRSKAMQLLRALEERFFSSSGSEKSGDFRESISSKLPAVYKKAQFELSKRLAKQ 612 (1120)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccceehhccCCcHHHHHHHHHHHHHHHHHh
Confidence 9999998888776654443222112222345566666666666666665555543
No 140
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=43.65 E-value=1.6e+02 Score=38.86 Aligned_cols=92 Identities=22% Similarity=0.383 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccC-------CchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCCh
Q 001247 245 YHEVIYDVYRCSPQILSGVVPYLTGELLT-------DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIV 317 (1115)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~s-------e~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~ 317 (1115)
+-.++..|+.+.|++-..++-+|..+... -+...++..++.+|.|..-.-...... =+..+.+|.-|.-.+.
T Consensus 481 YsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hkK~q~~ietk~~~VrfIsEL~KF~lv~~~~i-f~cLk~ll~dF~~hnI 559 (1128)
T KOG2051|consen 481 YSRLVATLSKCMPDVATELVTMLRKEFRSHLHKKAQINIETKLKIVRFISELCKFQLVPKFEI-FSCLKMLLNDFTHHNI 559 (1128)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHhhhhhCccChHHH-HHHHHHHHHhcccccH
Confidence 45789999999999999999999888753 367888999999999987642111111 2367788888999999
Q ss_pred hHHHHHHHHhHHHHhcCCCC
Q 001247 318 AVRMSVLEHVKSCLLTDPSR 337 (1115)
Q Consensus 318 ~VR~~~v~~~~~il~~~~~~ 337 (1115)
++=+.+++.||.+|.++|+.
T Consensus 560 Em~c~lLE~~GrfLlr~pEt 579 (1128)
T KOG2051|consen 560 EMACVLLESCGRFLLRSPET 579 (1128)
T ss_pred HHHHHHHHhcchhhhcChhH
Confidence 99999999999999999963
No 141
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.45 E-value=3.1e+02 Score=32.03 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=64.5
Q ss_pred cccCCchHHHHHHHHHHHHhhcCCC-C--Chhh--hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHH-
Q 001247 270 ELLTDQLDTRLKAVGLVGDLFAVPG-S--ANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI- 343 (1115)
Q Consensus 270 eL~se~~~~R~~At~~lg~m~s~~~-~--~~~~--~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l- 343 (1115)
.|.+.+..+|..|+.++|..+.... + .+.. --+.+...+- .|.+..+|.+..=+....|.+++.+ ..+.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~~g--~~~fl 206 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNKPG--QDEFL 206 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCcHH--HHHHH
Confidence 7888999999999999999998642 1 0111 1133444433 6778889999999999988888753 1122
Q ss_pred ----HHHHHHHcCCchhHHH--HHHHHHHHHhhhh
Q 001247 344 ----LTALCDRLLDFDENVR--KQVVAVICDVACH 372 (1115)
Q Consensus 344 ----~~~l~~rL~D~DekVR--~aaV~~i~~la~~ 372 (1115)
...|.+.+.+.+..|| +.|+.-+..+...
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 2577788888544444 5555555554443
No 142
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=42.99 E-value=1e+02 Score=34.44 Aligned_cols=135 Identities=14% Similarity=0.140 Sum_probs=73.1
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHc-
Q 001247 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL- 351 (1115)
Q Consensus 273 se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL- 351 (1115)
++|+.++..|.-++|..-+.+...-.-.+-..-.-..+-.+|.++.||...+.+..++=.+......++.-+..+.+..
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 6789999999999998755442111111122223456667889999998777776542221111111222333333332
Q ss_pred CC-chhHHHHHHHHHHHHhhhhh-cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 352 LD-FDENVRKQVVAVICDVACHA-LNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 352 ~D-~DekVR~aaV~~i~~la~~~-l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
-+ .|..|..++.+.+..+.... .+++=...+..+...+..=...+|..+++.|..+
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 22 36778888888888776432 1221111222222223333456777777766655
No 143
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=42.49 E-value=5e+02 Score=28.52 Aligned_cols=129 Identities=17% Similarity=0.055 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHhhCCcCccccHHHHHHHHhhc------cccchHhHHHHHHHhhcchHhhhhcccchHHHHHHHHh-hc
Q 001247 625 MQSCMDILGILARFSPLLLGGTEEELVNLLKEE------NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLC-LE 697 (1115)
Q Consensus 625 ~~~a~~LL~~iS~~~P~lf~~~~~~L~~~l~~~------~~~~~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la-~~ 697 (1115)
...+++++..+-+..|..| +..+.++..+... +........-..+..-..+....|.....+...+..+. ..
T Consensus 55 ~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~ 133 (234)
T PF12530_consen 55 RYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQS 133 (234)
T ss_pred HHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcc
Confidence 3578899999999999999 4555554441111 11111222222233333333333333446777788877 66
Q ss_pred CChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcccc
Q 001247 698 GSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPV 756 (1115)
Q Consensus 698 Gtp~~AK~Av~~L~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~L~sLa~ia~~~p~~ 756 (1115)
+.+...-.|+.+|..+...+ ...+....+.+..++ ..+.-|..+.+|.+++.+.|..
T Consensus 134 ~~~~~~alale~l~~Lc~~~-vvd~~s~w~vl~~~l-~~~~rp~v~~~l~~l~~l~~~~ 190 (234)
T PF12530_consen 134 CDEVAQALALEALAPLCEAE-VVDFYSAWKVLQKKL-SLDYRPLVLKSLCSLFALVPQG 190 (234)
T ss_pred ccHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHhc-CCccchHHHHHHHHHHHHhccc
Confidence 77888889999999888543 333434455555555 2236688888899999887743
No 144
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=41.93 E-value=6.7e+02 Score=29.85 Aligned_cols=90 Identities=18% Similarity=0.134 Sum_probs=59.1
Q ss_pred CchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC-CCC--CChHHHH------
Q 001247 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-PSR--ADAPQIL------ 344 (1115)
Q Consensus 274 e~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~-~~~--~~~~~l~------ 344 (1115)
.......+|.+.+++-|.. |..--.+.+.+.+.-+.|-++.||.+.++-.|.+-.-. .++ +...+++
T Consensus 36 ~~~k~k~lasq~ip~~fk~----fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~ 111 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKH----FPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLT 111 (460)
T ss_pred cchHHHHHHHHHHHHHHhh----CchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHH
Confidence 4556778899999999975 33333568999999999999999999998777533210 000 0011111
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHH
Q 001247 345 TALCDRLLDFDENVRKQVVAVICD 368 (1115)
Q Consensus 345 ~~l~~rL~D~DekVR~aaV~~i~~ 368 (1115)
.-+..-.. .||.+|-.+.+-|.+
T Consensus 112 ~Lf~~~~~-~D~~irek~l~fi~t 134 (460)
T KOG2213|consen 112 GLFGQIEV-GDEQIREKVLKFIRT 134 (460)
T ss_pred HHHhhhhh-hhHHHHHHHHHHHHH
Confidence 12222334 699999988887653
No 145
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=41.88 E-value=70 Score=32.54 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccccchHhHHHHHHHhhcc
Q 001247 603 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAGGT 675 (1115)
Q Consensus 603 ~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~------~~L~~~l~~-~~~~~~~~~L~~L~~~~~~ 675 (1115)
+..+..|.+++.. +|....-.|+.||..+.+.+...|..++ ++|.+++.. .++.+...+|..+..|+..
T Consensus 36 k~a~ral~KRl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNH----KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 4556666666532 2222334577888888888888888764 667777776 3445777888888888866
Q ss_pred hH
Q 001247 676 IR 677 (1115)
Q Consensus 676 ~~ 677 (1115)
++
T Consensus 112 f~ 113 (144)
T cd03568 112 FK 113 (144)
T ss_pred hC
Confidence 54
No 146
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=41.72 E-value=59 Score=38.44 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=77.9
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHH-HHHHHhcccCCCh---hHHHHHHHHhHHHHhcCCCC-
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIV---AVRMSVLEHVKSCLLTDPSR- 337 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~-~~~fL~R~~D~s~---~VR~~~v~~~~~il~~~~~~- 337 (1115)
.++.+..-|-+++..+|..|-+.+--++++.. +.+..-.+ -..|+-|.-|++- .=|.+..+.+..++.-....
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~--~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEE--SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH--HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 34444445667779999999999999998763 22211111 2346666666544 34888888888887652211
Q ss_pred CChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC
Q 001247 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1115)
Q Consensus 338 ~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~ 376 (1115)
..-..++.++....-++||+.|..+++.+|+++..+++.
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH
Confidence 223467788888888999999999999999999887664
No 147
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=41.55 E-value=8.1e+02 Score=30.70 Aligned_cols=108 Identities=12% Similarity=0.130 Sum_probs=74.0
Q ss_pred hhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCC
Q 001247 299 EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP 378 (1115)
Q Consensus 299 ~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~ 378 (1115)
.+|.+.|..+|.-.. -++.+.....+.++.+...=|+ ...+.++++.+.+-|-|..||.+|++.+-.+...+.++|+
T Consensus 19 ~~~~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 19 SQHEEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp GGGHHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred ccCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence 789999999998877 4788999999999998887775 4668999999999999999999999999988877776664
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 379 VETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 379 ~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
. +...|++.+--=.+..+..+=+.|..+|+.
T Consensus 96 k-vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~ 126 (556)
T PF05918_consen 96 K-VADVLVQLLQTDDPVELDAVKNSLMSLLKQ 126 (556)
T ss_dssp H-HHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 3 222223333333345555555666666665
No 148
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.48 E-value=1.4e+02 Score=37.77 Aligned_cols=141 Identities=16% Similarity=0.169 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhH
Q 001247 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357 (1115)
Q Consensus 278 ~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~Dek 357 (1115)
.|=.|+-.---||+..+ ...++-++.+ +|++|-+|..=+=...-.... .+ ..+-|-.-|.--..|+++.
T Consensus 502 ~RGl~vGiaL~~ygrqe-----~Ad~lI~el~---~dkdpilR~~Gm~t~alAy~G--Tg-nnkair~lLh~aVsD~nDD 570 (929)
T KOG2062|consen 502 IRGLAVGIALVVYGRQE-----DADPLIKELL---RDKDPILRYGGMYTLALAYVG--TG-NNKAIRRLLHVAVSDVNDD 570 (929)
T ss_pred HHHHHHhHHHHHhhhhh-----hhHHHHHHHh---cCCchhhhhhhHHHHHHHHhc--cC-chhhHHHhhcccccccchH
Confidence 35555554444554432 1123333333 466777776433222211111 11 0122333444445677777
Q ss_pred HHHHHHHHHHHhhhhhcCCCCH-------------------------------HHHHHHHHhhccCChhHHHHHHHHHHH
Q 001247 358 VRKQVVAVICDVACHALNSIPV-------------------------------ETVKLVAERLRDKSVLVKRYTMERLAD 406 (1115)
Q Consensus 358 VR~aaV~~i~~la~~~l~~v~~-------------------------------~~l~~l~eR~rDKk~~VR~~Ai~~L~~ 406 (1115)
||++||.+++-+-+.+++.+|. +.+..+--.+.|+.-=||+-|+-++|-
T Consensus 571 VrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~am 650 (929)
T KOG2062|consen 571 VRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAM 650 (929)
T ss_pred HHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHH
Confidence 7777777776555555443322 233344455667777788888888777
Q ss_pred HHHHhhhhccCCCcchhhcccchHHHhhh
Q 001247 407 IFRGCCLRNFNGSINQNEFEWIPGKILRC 435 (1115)
Q Consensus 407 ly~~~~~~~~~~~~~~~~~~wIP~~il~~ 435 (1115)
+--... .....++..|-..+...
T Consensus 651 Im~Q~t------~~~~pkv~~frk~l~kv 673 (929)
T KOG2062|consen 651 IMIQQT------EQLCPKVNGFRKQLEKV 673 (929)
T ss_pred HHHhcc------cccCchHHHHHHHHHHH
Confidence 655431 12223455555555544
No 149
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=39.68 E-value=2.2e+02 Score=32.77 Aligned_cols=129 Identities=20% Similarity=0.268 Sum_probs=84.9
Q ss_pred chHHHHH---HHHHHHHhhcCC-CCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCCh--------HH
Q 001247 275 QLDTRLK---AVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA--------PQ 342 (1115)
Q Consensus 275 ~~~~R~~---At~~lg~m~s~~-~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~--------~~ 342 (1115)
|+..|-. .+..+-|+|... |..++..|....+.=| ..| +..|.+...+.++-|+.+. +.... .+
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGL--iad-dasVKiLackqigcilEdc-DtnaVseillvvNae 128 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGL--IAD-DASVKILACKQIGCILEDC-DTNAVSEILLVVNAE 128 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcc--cCC-cchhhhhhHhhhhHHHhcC-chhhHHHHHHHhhhh
Confidence 4455555 788899999875 5566766665555433 334 6688888888888777643 22222 25
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHhhhhh--cCCC-CHH-----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 343 ILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSI-PVE-----TVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 343 l~~~l~~rL~D~DekVR~aaV~~i~~la~~~--l~~v-~~~-----~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
+.+-+..++...|+.|-.+|++.+..++.+. ++.+ +.+ -++.++.|+-| -+|-.....+-+++..
T Consensus 129 ilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd---iaRvRVleLIieifSi 201 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND---IARVRVLELIIEIFSI 201 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh---HHHHHHHHHHHHHHhc
Confidence 5677888999999999999999999887532 3322 222 35566777644 4566566666666654
No 150
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=39.38 E-value=2.6e+02 Score=27.76 Aligned_cols=81 Identities=7% Similarity=0.027 Sum_probs=58.1
Q ss_pred HHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC-----CCCHHHHHHHHHhhccC---ChhHHHHH
Q 001247 329 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN-----SIPVETVKLVAERLRDK---SVLVKRYT 400 (1115)
Q Consensus 329 ~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~-----~v~~~~l~~l~eR~rDK---k~~VR~~A 400 (1115)
+++.+.+ ....+.+.+|.+||...+..|.+-|+..+..+....-. ..+.+.+..+...+.++ ...||+.+
T Consensus 26 d~I~~~~--~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~ki 103 (133)
T cd03561 26 DLINLKP--NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKA 103 (133)
T ss_pred HHHhCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 4444443 34679999999999999999999999998887764432 22446666666666654 46899998
Q ss_pred HHHHHHHHHHh
Q 001247 401 MERLADIFRGC 411 (1115)
Q Consensus 401 i~~L~~ly~~~ 411 (1115)
+..+..-+..+
T Consensus 104 l~ll~~W~~~f 114 (133)
T cd03561 104 LELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHh
Confidence 88776655543
No 151
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=39.04 E-value=77 Score=29.64 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 001247 355 DENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1115)
Q Consensus 355 DekVR~aaV~~i~~la~~~l~~v~~---~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~ 412 (1115)
+...|.++|-++|.+....+..||. ++|..|+....| ...||+.+=+.|+..++.+.
T Consensus 2 ~~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 2 DLRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp H-HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 3567899999999998888888887 567889999997 78999999999999999873
No 152
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=37.53 E-value=2.5e+02 Score=32.47 Aligned_cols=126 Identities=10% Similarity=0.169 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhcccc-------cccHHHHHHHHHhhcC----CCchHHHHHHHHHHHHhhhhhhHHHHHHHHHh----
Q 001247 167 VLSSMQTIMIVLLEESE-------DIQEDLLVILLSALGR----NKNDTARRLAMNVIEQCAGKLEAGIKQFLVSS---- 231 (1115)
Q Consensus 167 v~~~m~~Il~~vI~e~~-------~i~~~~ld~il~~~~~----~~~~~a~~la~~v~~~~~~~l~~~i~~~~~~~---- 231 (1115)
+...++.++...|+.++ .+=+++++.+|.-... .+....-.+...+|++-.+.+.+.+.+.+..+
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 45555666666666544 2333444444432222 13336678888899888888777777776543
Q ss_pred ---hcCCCCCC-CCcchHHHHHHHHHhhCchhhh--------hhhhhhhccccCCchHHHHHHHHHHHHhhcC
Q 001247 232 ---MSGDSRPG-HSHIDYHEVIYDVYRCSPQILS--------GVVPYLTGELLTDQLDTRLKAVGLVGDLFAV 292 (1115)
Q Consensus 232 ---l~~~~~~~-~~~~~~h~li~el~~~~P~lL~--------~Vip~Le~eL~se~~~~R~~At~~lg~m~s~ 292 (1115)
+.+|-... +-....++++..+.+.||+.+. .++-.+..-.++.+.++-..+.+.+..|+..
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNN 195 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 33332211 1223568899988888777664 4566677778888999999999999888863
No 153
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=36.05 E-value=59 Score=25.09 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHhh
Q 001247 342 QILTALCDRLLDFDENVRKQVVAVICDVA 370 (1115)
Q Consensus 342 ~l~~~l~~rL~D~DekVR~aaV~~i~~la 370 (1115)
..++.|...|.+.|+.||.+|+-+++.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36778888899999999999999988764
No 154
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=34.84 E-value=3.5e+02 Score=31.43 Aligned_cols=137 Identities=20% Similarity=0.298 Sum_probs=0.0
Q ss_pred hhhhhccccCCchHHHHHHHHHHHHhhcCCCCC-----hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC-CCC
Q 001247 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-----NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-PSR 337 (1115)
Q Consensus 264 ip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~-----~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~-~~~ 337 (1115)
+|+|...|-|+|.+.-+.||--+-+++|...+. ...---+-|-+|+. ++--.|.++-..-..+| .++
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~-------~~q~~mlqfEAaWalTNiaSG 145 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMD-------EIQRDMLQFEAAWALTNIASG 145 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHH-------hcchhHHHHHHHHHHhhhccC
Q ss_pred CChH-------HHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhc---------------------CCCCHHHHH----HH
Q 001247 338 ADAP-------QILTALCDRLLDFDENVRKQVVAVICDVACHAL---------------------NSIPVETVK----LV 385 (1115)
Q Consensus 338 ~~~~-------~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l---------------------~~v~~~~l~----~l 385 (1115)
.-.+ .-++-+...|.++++.||-++|=+++.+|-.+. +....++++ +|
T Consensus 146 tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 146 TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Q ss_pred HHhhccCCh----hHHHHHHHHHHHH
Q 001247 386 AERLRDKSV----LVKRYTMERLADI 407 (1115)
Q Consensus 386 ~eR~rDKk~----~VR~~Ai~~L~~l 407 (1115)
...+|-|++ ++=..|+-.|++|
T Consensus 226 SNlcRGknP~P~w~~isqalpiL~KL 251 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQALPILAKL 251 (526)
T ss_pred HHhhCCCCCCCchHHHHHHHHHHHHH
No 155
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=34.09 E-value=2.5e+02 Score=29.66 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=53.4
Q ss_pred HHHHHHhcccCCChhHHHHHHHHhHHHHh---cCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001247 304 VFSEFLKRLTDRIVAVRMSVLEHVKSCLL---TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1115)
Q Consensus 304 ~~~~fL~R~~D~s~~VR~~~v~~~~~il~---~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1115)
.|...|.-..+.+..||...++...-++. .|| .+.++.|....-|+++.||..|.+...++..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 47788888899999999999999998886 355 3788899999999999999998887777654
No 156
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=32.96 E-value=2.1e+02 Score=33.26 Aligned_cols=128 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhh--------hcHHHHHHHHhcccCCCh---------hHH
Q 001247 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE--------QFHSVFSEFLKRLTDRIV---------AVR 320 (1115)
Q Consensus 258 ~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~--------~~~~~~~~fL~R~~D~s~---------~VR 320 (1115)
.+|.+=+..|+..|.+....+...|.+++..|.+-.|...++ +.+.+=+-.--|..+... +||
T Consensus 52 ~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 52 SILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Q ss_pred HHHHHHhHHHHhcCCC---------CCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhcc
Q 001247 321 MSVLEHVKSCLLTDPS---------RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRD 391 (1115)
Q Consensus 321 ~~~v~~~~~il~~~~~---------~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rD 391 (1115)
..++++.-.++...+. +....-+.+++.+ |+.+-|+.- |.++.+++-+
T Consensus 132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~---D~~~~v~~i--------------------L~~l~~~Vl~ 188 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRK---DPPETVILI--------------------LETLKDKVLK 188 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccC---CCHHHHHHH--------------------HHHHHHHhcc
Q ss_pred CChhHHH---------HHHHHHHHHHH
Q 001247 392 KSVLVKR---------YTMERLADIFR 409 (1115)
Q Consensus 392 Kk~~VR~---------~Ai~~L~~ly~ 409 (1115)
-+ .|.+ .++..|+.+|.
T Consensus 189 ~~-~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 189 DS-SVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred CC-CCChhhhhhhcCHHHHHHHHHHhc
No 157
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=32.70 E-value=7.9e+02 Score=29.11 Aligned_cols=223 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCchHHH
Q 001247 509 DGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDF 588 (1115)
Q Consensus 509 ~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r~~~llk~~~~~~s~~~~~~~a~~ellkkl~~~~~~~~~ 588 (1115)
+++++....++.+.|-.+...| ..|=++.++.|.+--=.-++++|.. ++++..|..+. +....|
T Consensus 102 d~~e~~~l~kvK~~i~~~~~ly--~~kY~e~f~~~l~~fv~~vw~lL~~-~~~~~~~D~lv-------------~~al~F 165 (370)
T PF08506_consen 102 DDDEPGLLEKVKAWICENLNLY--AEKYEEEFEPFLPTFVQAVWNLLTK-ISQQPKYDILV-------------SKALQF 165 (370)
T ss_dssp -SSS--HHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHTC---SSGGGHHHH-------------HHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccccHHH-------------HHHHHH
Q ss_pred HHHHHHhhhcc-cc-chhHHHHHHHHH------------------------HhhcccchhhhhHHHHHHHHHHHhhCCcC
Q 001247 589 LSTLSMKCSYL-LF-NKEHVKEILLEV------------------------AAQKSSANAQFMQSCMDILGILARFSPLL 642 (1115)
Q Consensus 589 ~~~Ll~R~s~~-i~-n~s~V~~Ll~~~------------------------~~~~~~~~~~~~~~a~~LL~~iS~~~P~l 642 (1115)
+..+..+...- +| |+.|+..|++.+ ..-..+...+....|.++|..+++.++.-
T Consensus 166 L~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~ 245 (370)
T PF08506_consen 166 LSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ 245 (370)
T ss_dssp HHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH
Q ss_pred ccccHHHHHHHHhh-------ccccchHhHHHHHHHhhcchHhhhhcccc-----hHHHHHHHHhh-------cCChHHH
Q 001247 643 LGGTEEELVNLLKE-------ENEIIKEGILHVLAKAGGTIREQLAATSS-----SVDLLLERLCL-------EGSRRQA 703 (1115)
Q Consensus 643 f~~~~~~L~~~l~~-------~~~~~~~~~L~~L~~~~~~~~~~~~~~~~-----~l~~~L~~la~-------~Gtp~~A 703 (1115)
..+-+...+..+-. .+....++++..+..++-.....-.+..+ .+..-+..... ...|-.-
T Consensus 246 v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLk 325 (370)
T PF08506_consen 246 VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILK 325 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchH
Q ss_pred HHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHH
Q 001247 704 KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLG 747 (1115)
Q Consensus 704 K~Av~~L~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~L~sLa 747 (1115)
=.|++.+....+.=....+..++..+..+|...+...+..++.+
T Consensus 326 a~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 326 ADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
No 158
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=32.25 E-value=7.9e+02 Score=27.82 Aligned_cols=61 Identities=25% Similarity=0.283 Sum_probs=36.5
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHhh
Q 001247 345 TALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS--VLVKRYTMERLADIFRGCC 412 (1115)
Q Consensus 345 ~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk--~~VR~~Ai~~L~~ly~~~~ 412 (1115)
.+|.+-+.|.-.-.|.+|--+++++ -+..-+-.+.+.++|.+ +=||.+|...||.+=...|
T Consensus 190 ~al~~~l~~~SalfrhEvAfVfGQl-------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 190 NALIDGLADDSALFRHEVAFVFGQL-------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred HHHHHhcccchHHHHHHHHHHHhhc-------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 3444444444444444443333332 13334557788888887 5799999999998766543
No 159
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=31.86 E-value=76 Score=27.18 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=29.1
Q ss_pred HHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHH
Q 001247 322 SVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRK 360 (1115)
Q Consensus 322 ~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~ 360 (1115)
++|+.++.|...|+ ..+|...|.++-+||||.|-.
T Consensus 7 k~VQ~iKEiv~~hs----e~eIya~L~ecnMDpnea~qr 41 (60)
T PF06972_consen 7 KTVQSIKEIVGCHS----EEEIYAMLKECNMDPNEAVQR 41 (60)
T ss_pred HHHHHHHHHhcCCC----HHHHHHHHHHhCCCHHHHHHH
Confidence 67899999887755 358999999999999998754
No 160
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=31.73 E-value=4.3e+02 Score=33.60 Aligned_cols=222 Identities=15% Similarity=0.205 Sum_probs=125.7
Q ss_pred ChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCC-----c----------h-----------HHHHHHHHHHHHh
Q 001247 163 HPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK-----N----------D-----------TARRLAMNVIEQC 216 (1115)
Q Consensus 163 ~~~~v~~~m~~Il~~vI~e~~~i~~~~ld~il~~~~~~~-----~----------~-----------~a~~la~~v~~~~ 216 (1115)
.|..+.+.|-|...+.=..++...+.++.-+=..|..+. + + .--+|..++|+-.
T Consensus 455 ~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~phF~~~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm 534 (1106)
T KOG0162|consen 455 RPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHPHFESRSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELM 534 (1106)
T ss_pred CCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCCccccccCceEEEEeccceeeecccccccchhHHHHHHHHHH
Confidence 477788888888887777777777777776554443211 0 0 2346777777666
Q ss_pred hhhhhHHHHHHHHHhhcCCCC--CCCC----cchHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhh
Q 001247 217 AGKLEAGIKQFLVSSMSGDSR--PGHS----HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLF 290 (1115)
Q Consensus 217 ~~~l~~~i~~~~~~~l~~~~~--~~~~----~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~ 290 (1115)
...=.+.+...|-+-+..++. +... ...+.+|+..|.+|.|.-+-.+=|.=.-.=+.=++..=+.-++-||-==
T Consensus 535 ~ts~~~Fl~slFPe~v~~dskrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqE 614 (1106)
T KOG0162|consen 535 QTSENPFLKSLFPENVDADSKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQE 614 (1106)
T ss_pred hccchHHHHHhCchhhcccccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhh
Confidence 665566666666554443322 2221 2248999999999999999887775332111112222233455554110
Q ss_pred --cCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 001247 291 --AVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1115)
Q Consensus 291 --s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~ 368 (1115)
.-..+ .=.|+.+|..|+.||.=.+|.- |-.+ .+++.+.+.-.|.+--+++|+= +
T Consensus 615 NiRvRRA--GfAYRr~F~kF~qRyailsp~t---~~tw---------qGD~~~av~~il~~~~m~~~qy----------Q 670 (1106)
T KOG0162|consen 615 NIRVRRA--GFAYRRAFDKFAQRYAILSPQT---WPTW---------QGDEKQAVEHILRDVNMPSDQY----------Q 670 (1106)
T ss_pred heeehhh--hhHHHHHHHHHHHHheecCccc---cccc---------ccchHHHHHHHHHhcCCChhHh----------h
Confidence 00111 2369999999999999888875 4422 1222222333333344444432 2
Q ss_pred hhh-hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 001247 369 VAC-HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1115)
Q Consensus 369 la~-~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~ 413 (1115)
+.. ..|-.-|+.++ +.|-|||||+.== ...+-+.|+.+..
T Consensus 671 mG~tkVFiKnPEsLF--~LEemRer~~d~~---A~~IQkAWRrfv~ 711 (1106)
T KOG0162|consen 671 MGVTKVFIKNPESLF--LLEEMRERKWDGM---ARRIQKAWRRFVA 711 (1106)
T ss_pred ccceeEEecChHHHH--HHHHHHHHHhhHH---HHHHHHHHHHHHH
Confidence 222 23445577765 6788999998522 1233456666544
No 161
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.03 E-value=1.3e+02 Score=37.47 Aligned_cols=62 Identities=13% Similarity=0.016 Sum_probs=48.7
Q ss_pred HHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-cCCCCHHHH
Q 001247 321 MSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPVETV 382 (1115)
Q Consensus 321 ~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~-l~~v~~~~l 382 (1115)
..++++|-.++...|+....+.++..+-....|++.-||...|.+|..+.... ...++..++
T Consensus 303 ~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~V 365 (704)
T KOG2153|consen 303 QVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIV 365 (704)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHH
Confidence 46788888888888887777899999999999999999999999988766533 233333333
No 162
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=30.68 E-value=5.1e+02 Score=30.74 Aligned_cols=123 Identities=17% Similarity=0.243 Sum_probs=82.5
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCC--c
Q 001247 18 TPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYS--D 95 (1115)
Q Consensus 18 ~~~~~~~~Ll~rL~~l~~~L~~~~Q~~~~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~--~ 95 (1115)
.||......+..|++|-+.+.. |+. ..+..-++.+.-.+...-++-|-..-||..+.--+-.|++-+. ..+.. .
T Consensus 223 ~p~p~l~~vL~fl~~Ll~~~~~--~~~-~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~-~~~~~~~~ 298 (373)
T PF14911_consen 223 APPPRLASVLAFLQQLLKRLQR--QNE-NQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ-VGSSGEPR 298 (373)
T ss_pred CCCCcHHHHHHHHHHHHHhcCc--ccc-hhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc-ccCcchHH
Confidence 3777778888888888777752 222 2344556666666666666667677799998888888887554 12222 3
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHHhhc
Q 001247 96 DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVAS 160 (1115)
Q Consensus 96 ~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~~~~li~~lF~~~~~~v~ 160 (1115)
+++..+|.-|+.--.. -|-.+||.+||++|+.. .+++..++-++=..+.
T Consensus 299 ~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~----------p~lV~~Lip~i~q~l~ 347 (373)
T PF14911_consen 299 EQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELD----------PQLVISLIPTIRQSLK 347 (373)
T ss_pred HHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhC----------HHHHHHHHHHHHHHHH
Confidence 6788888888874322 34478999999999864 4566666666554443
No 163
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.34 E-value=8.9e+02 Score=31.70 Aligned_cols=243 Identities=13% Similarity=0.172 Sum_probs=0.0
Q ss_pred HhHHHHHHHh-cchhhhcCCCcchHHHHHHHHHHHHhhcCCCC-----CCCchHHHHHHHHHHHhccCCCCC--CCCChh
Q 001247 50 EAMQPFLNAI-VQPVLLKHQDKDVKLLVATCICEITRITAPEA-----PYSDDVLKDIFQLIVGTFSGLKDT--GGPSFG 121 (1115)
Q Consensus 50 ~~l~~~~~~L-~~~~lL~h~d~~Vr~~~acCl~dilRi~APda-----Py~~~~lkdif~l~~~~~~~L~d~--~~~~~~ 121 (1115)
+++..++..| +=..+|.|.|+.+=-+++.|++-|.-=++|++ =+..+-++.+=+|+.-+ ++ +++-|.
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt-----~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT-----PTILSNGTYT 402 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC-----cccccccchh
Q ss_pred hHHHHHHHHH--hhhhhhhhccCCchHHHHHHHHHHHHhhcCCChhcHHH---HHHHHHHHHhcccccccHH--------
Q 001247 122 RRVVILETLA--KYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLS---SMQTIMIVLLEESEDIQED-------- 188 (1115)
Q Consensus 122 ~~~~lLe~la--~vks~vl~~dl~~~~li~~lF~~~~~~v~~~~~~~v~~---~m~~Il~~vI~e~~~i~~~-------- 188 (1115)
--+-+|-.++ ..-.+.....++=-+.+.++|.+.-...+.++.+-+-. ........+|+=.--.|.+
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~ 482 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCS 482 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhh
Q ss_pred ----------------------------HHHHHHHhhcCCCch---HHHHHH----HHHHHHhhhhhhHHHHHHHHHhhc
Q 001247 189 ----------------------------LLVILLSALGRNKND---TARRLA----MNVIEQCAGKLEAGIKQFLVSSMS 233 (1115)
Q Consensus 189 ----------------------------~ld~il~~~~~~~~~---~a~~la----~~v~~~~~~~l~~~i~~~~~~~l~ 233 (1115)
+..-|+.|+.....+ .+.+++ +.++.+-.+.++..+...|. +++
T Consensus 483 ~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llp-VLv 561 (1051)
T KOG0168|consen 483 LIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLP-VLV 561 (1051)
T ss_pred hhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHH-HHH
Q ss_pred CCCCCCCCcchHHHHHHHHHhh----CchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCC-----------hh
Q 001247 234 GDSRPGHSHIDYHEVIYDVYRC----SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-----------NN 298 (1115)
Q Consensus 234 ~~~~~~~~~~~~h~li~el~~~----~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~-----------~~ 298 (1115)
+--..+-...=-|..+..|.|. .+++|.+|+.+ ...-.-+.-|++.++.. ++
T Consensus 562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~-------------~~vSS~lAG~lsskD~~vlVgALQvAEiLm 628 (1051)
T KOG0168|consen 562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKN-------------TNVSSHLAGMLSSKDLTVLVGALQVAEILM 628 (1051)
T ss_pred HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhc-------------chHHHHHHhhhhcCCCeeEeehHHHHHHHH
Q ss_pred hhcHHHHHHHHhc
Q 001247 299 EQFHSVFSEFLKR 311 (1115)
Q Consensus 299 ~~~~~~~~~fL~R 311 (1115)
+++|++|.....|
T Consensus 629 eKlpd~F~~~F~R 641 (1051)
T KOG0168|consen 629 EKLPDTFSPSFRR 641 (1051)
T ss_pred HHhHHHhhhhHhh
No 164
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=30.15 E-value=4.8e+02 Score=26.92 Aligned_cols=143 Identities=18% Similarity=0.238 Sum_probs=75.8
Q ss_pred HHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCC-----hhHHHHHHHH
Q 001247 252 VYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI-----VAVRMSVLEH 326 (1115)
Q Consensus 252 l~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s-----~~VR~~~v~~ 326 (1115)
-|.-.|++|.-.+..|..| .+..+|..|.+++| .+|+-+ |-.++..-+...+.. ....-...-.
T Consensus 4 PY~~yP~LL~~L~~iLk~e---~s~~iR~E~lr~lG-ilGALD-------P~~~k~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (160)
T PF11865_consen 4 PYLDYPELLDILLNILKTE---QSQSIRREALRVLG-ILGALD-------PYKHKSIQKSLDSKSSENSNDESTDISLPM 72 (160)
T ss_pred hHHHhHHHHHHHHHHHHhC---CCHHHHHHHHHHhh-hccccC-------cHHHhcccccCCccccccccccchhhHHhh
Confidence 4667799999988888887 34999999999999 555433 222222222111111 1111111100
Q ss_pred hHHHHhcCCCCCCh--HHHHHHHHHHcCCchhHHHH-HHHHHHHHhhh-hhcCCCCH--HHHHHHHHhhccCChhHHHHH
Q 001247 327 VKSCLLTDPSRADA--PQILTALCDRLLDFDENVRK-QVVAVICDVAC-HALNSIPV--ETVKLVAERLRDKSVLVKRYT 400 (1115)
Q Consensus 327 ~~~il~~~~~~~~~--~~l~~~l~~rL~D~DekVR~-aaV~~i~~la~-~~l~~v~~--~~l~~l~eR~rDKk~~VR~~A 400 (1115)
....|+.++- .-++++|..-|.|+--.--. ++|+++-.+-. .....+|. .++-.+..-+|.-..+.|+.-
T Consensus 73 ----~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~ 148 (160)
T PF11865_consen 73 ----MGISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFY 148 (160)
T ss_pred ----ccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHH
Confidence 0011221111 23456666666665443332 45555544432 22333433 344555666665566888888
Q ss_pred HHHHHHHHH
Q 001247 401 MERLADIFR 409 (1115)
Q Consensus 401 i~~L~~ly~ 409 (1115)
...|+.+..
T Consensus 149 ~~qL~~lv~ 157 (160)
T PF11865_consen 149 FQQLADLVS 157 (160)
T ss_pred HHHHHHHHH
Confidence 888888765
No 165
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=30.03 E-value=1.3e+03 Score=30.33 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=80.0
Q ss_pred HHHHhcccCCChhHHHHHHHHhHHHHhcCC-C--CCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh---cCCCCH
Q 001247 306 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDP-S--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---LNSIPV 379 (1115)
Q Consensus 306 ~~fL~R~~D~s~~VR~~~v~~~~~il~~~~-~--~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~---l~~v~~ 379 (1115)
..|...+.|+.-.=|.+-++....++.+.. . ......+...+.-++.|..-.|=.-+...+..+|... +.....
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 367788889999999999999999998766 1 1223466778889999999999999888888888633 333344
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 001247 380 ETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 380 ~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
.++-.+.+|+.|||..+|..+...+=.+-+
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~n 365 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILN 365 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHh
Confidence 567788999999999999876665544444
No 166
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=29.67 E-value=2.1e+02 Score=28.23 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCc-hhHHHHHHHHHHHHhhhhhcCCCCHHHH------HHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 342 QILTALCDRLLDF-DENVRKQVVAVICDVACHALNSIPVETV------KLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 342 ~l~~~l~~rL~D~-DekVR~aaV~~i~~la~~~l~~v~~~~l------~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
++++.|.+.|..+ |..+-.-||.-|++++...+.. ..++ ..+-+.|....+.||.+|+.++.++-..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g--r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG--RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG--HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH--HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 5666666666333 4445555555566655543331 1222 2456778889999999999999887543
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.30 E-value=3.7e+02 Score=35.78 Aligned_cols=136 Identities=15% Similarity=0.143 Sum_probs=83.1
Q ss_pred CchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCC-ChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC
Q 001247 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD 334 (1115)
Q Consensus 256 ~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~-~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~ 334 (1115)
.++++.--+.+|++. .+.-.|+=..-.||++..+-.. .+.-..-......+.=..|..|+||.+.|-+.+.+|.+.
T Consensus 597 ~~~li~iCle~lnd~---~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 597 NGNLIGICLEHLNDD---PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred cccHHHHHHHHhcCC---ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 444444333333332 3688999999999999987532 122233334445555678999999999999999988764
Q ss_pred CCCCChHHHHHHHHHHcCC-chhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 335 PSRADAPQILTALCDRLLD-FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 335 ~~~~~~~~l~~~l~~rL~D-~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
.+..++ -....+...| +|++++.+- .....+-.+..++.|=.+-||+|-...|+.+-..|
T Consensus 674 ~d~fde---~~~~~~~~~~l~~~~~~~E~--------------~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 674 SDNFDE---QTLVVEEEIDLDDERTSIED--------------LIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred ccccch---hhhhhhhhhcchhhhhhHHH--------------HHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 321111 1112233444 444444431 11111235678899999999999888877765544
No 168
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=28.80 E-value=61 Score=24.99 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=26.5
Q ss_pred hhhhhhhhccccCCchHHHHHHHHHHHHhh
Q 001247 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLF 290 (1115)
Q Consensus 261 ~~Vip~Le~eL~se~~~~R~~At~~lg~m~ 290 (1115)
.+++|.|-.-|.+++..+|..|+-.||.+-
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 358888999999999999999999999874
No 169
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.75 E-value=1.1e+02 Score=38.73 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=57.1
Q ss_pred hhcHHHHHHHHhcccCCCh--hHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC
Q 001247 299 EQFHSVFSEFLKRLTDRIV--AVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1115)
Q Consensus 299 ~~~~~~~~~fL~R~~D~s~--~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~ 376 (1115)
+..+.++...+.=..+.-. -+|-.-|-.+-- +. .+ ..+--..+.+.+.|-|.-.|..-+-++.- |+..-
T Consensus 480 t~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~-~y---gr--qe~Ad~lI~el~~dkdpilR~~Gm~t~al-Ay~GT-- 550 (929)
T KOG2062|consen 480 TANQEAIEDMLTYAQETQHEKIIRGLAVGIALV-VY---GR--QEDADPLIKELLRDKDPILRYGGMYTLAL-AYVGT-- 550 (929)
T ss_pred cCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHH-Hh---hh--hhhhHHHHHHHhcCCchhhhhhhHHHHHH-HHhcc--
Confidence 4455566655555544433 234433333211 11 11 12455566778899999999876665542 32111
Q ss_pred CCHHHHHHHHHh-hccCChhHHHHHHHHHHHHH
Q 001247 377 IPVETVKLVAER-LRDKSVLVKRYTMERLADIF 408 (1115)
Q Consensus 377 v~~~~l~~l~eR-~rDKk~~VR~~Ai~~L~~ly 408 (1115)
-.-+.++.|.+= +-|-+-.||+.|..+||-+-
T Consensus 551 gnnkair~lLh~aVsD~nDDVrRaAVialGFVl 583 (929)
T KOG2062|consen 551 GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVL 583 (929)
T ss_pred CchhhHHHhhcccccccchHHHHHHHHHheeeE
Confidence 122344444444 67888999999999999743
No 170
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.75 E-value=1.4e+03 Score=29.56 Aligned_cols=124 Identities=18% Similarity=0.111 Sum_probs=96.7
Q ss_pred HHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHH
Q 001247 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1115)
Q Consensus 246 h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~ 325 (1115)
|.-+..--+.-|++=.-.++.+-..-..+++.+|..|.++.|.+=-. .--.-++...++--+|.+|.||...+-
T Consensus 70 yLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~------~i~ey~~~Pl~~~l~d~~~yvRktaa~ 143 (734)
T KOG1061|consen 70 YLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVD------KITEYLCDPLLKCLKDDDPYVRKTAAV 143 (734)
T ss_pred HHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh------HHHHHHHHHHHHhccCCChhHHHHHHH
Confidence 44444455678998888999999999999999999999998854322 222446777888889999999999988
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC
Q 001247 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1115)
Q Consensus 326 ~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~ 375 (1115)
++...-.-+++......+++.|..-+.|+|..|=..|+.++.++...+.+
T Consensus 144 ~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 144 CVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 88776665555444457888899999999999999999999988876654
No 171
>PF04867 DUF643: Protein of unknown function (DUF643); InterPro: IPR006951 These are proteins of unknown function found in Borrelia burgdorferi (Lyme disease spirochete)
Probab=28.25 E-value=5.3e+02 Score=24.56 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=52.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHH
Q 001247 468 WVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYL---SLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILD 544 (1115)
Q Consensus 468 ll~l~~~lD~~~~ka~~~il~~k~~~~~~~~~~l---~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~ 544 (1115)
...+|..|++..++....+-+-.+--...=+++. +..+++. .|.-+.+..+-.-+-||.| +|-
T Consensus 4 isdFYdnL~~~tKKei~kLY~t~Q~TleqKrqiYs~y~~~Qeyk--------rKtGKSi~eiind~l~p~k------~fI 69 (114)
T PF04867_consen 4 ISDFYDNLSKETKKEINKLYGTDQLTLEQKRQIYSAYEAIQEYK--------RKTGKSINEIINDILDPAK------KFI 69 (114)
T ss_pred HhHHHhccCHhHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHH--------HhhcccHHHHHHHHhhHHH------HHH
Confidence 4568888898888887766544332222222222 2222221 2222222222233345555 333
Q ss_pred h--hhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 001247 545 Q--LKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKH 583 (1115)
Q Consensus 545 ~--l~D~r~~~llk~~~~~~s~~~~~~~a~~ellkkl~~~~ 583 (1115)
+ |+|..+-+-.+..-+...||.--.-..++-+.|+|...
T Consensus 70 kdvLKdk~li~kykn~kn~k~D~syKegmLekCL~klGE~~ 110 (114)
T PF04867_consen 70 KDVLKDKYLIKKYKNSKNMKFDFSYKEGMLEKCLEKLGEDK 110 (114)
T ss_pred HHHHhhhHHHHHHhccccceeechHhHhHHHHHHHHhcccc
Confidence 3 57776666666554455555333345678888888753
No 172
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.01 E-value=5.1e+02 Score=30.27 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=93.8
Q ss_pred hhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 001247 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1115)
Q Consensus 264 ip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l 343 (1115)
+|.--....+-+.+.|..|..-|-...-..+-+..=.--.-|.--++=-++.++.||.....-++.+..|||.. ...+
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~--Qe~v 162 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS--QEQV 162 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH--HHHH
Confidence 45555566677888899999988766554331111111335888888889999999999999999999999941 1122
Q ss_pred HH------HHHHHcCCchhHHHHHHHHHHHHhhhhhcCC------C-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 344 LT------ALCDRLLDFDENVRKQVVAVICDVACHALNS------I-PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 344 ~~------~l~~rL~D~DekVR~aaV~~i~~la~~~l~~------v-~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
++ -+.---.|.+..||..|.-||+.+....... + ...+|..+.++- ++....++.|+..++.+-..
T Consensus 163 ~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 163 IELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-NTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHh
Confidence 21 2222238999999999999999876533221 1 234444443331 13455666677777776665
Q ss_pred h
Q 001247 411 C 411 (1115)
Q Consensus 411 ~ 411 (1115)
.
T Consensus 242 ~ 242 (342)
T KOG2160|consen 242 D 242 (342)
T ss_pred h
Confidence 3
No 173
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=27.05 E-value=1.8e+02 Score=29.41 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhCCcCccccH------HHHHHHHhh------ccccchHhHHHHHHHhhcchH
Q 001247 626 QSCMDILGILARFSPLLLGGTE------EELVNLLKE------ENEIIKEGILHVLAKAGGTIR 677 (1115)
Q Consensus 626 ~~a~~LL~~iS~~~P~lf~~~~------~~L~~~l~~------~~~~~~~~~L~~L~~~~~~~~ 677 (1115)
-.|+.||..+.+.+..-|..++ .+|++++.. .++.+...+|..+..|+..++
T Consensus 56 l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 56 LQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3456667777776666665553 577777753 123466788888888886654
No 174
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=26.60 E-value=1.3e+03 Score=28.68 Aligned_cols=191 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred hccCCchHHHHHHHHHHHHhhc---------CCChhcHHHHHHHHHHHHhcccccccH---HHHHHHHHhhcCCCch---
Q 001247 139 MLDLECDELVNEMYSTFFAVAS---------DDHPESVLSSMQTIMIVLLEESEDIQE---DLLVILLSALGRNKND--- 203 (1115)
Q Consensus 139 ~~dl~~~~li~~lF~~~~~~v~---------~~~~~~v~~~m~~Il~~vI~e~~~i~~---~~ld~il~~~~~~~~~--- 203 (1115)
+..++..|++.+|=++|-.+-- .+..+.|......=+...|.|.+++.. +++|++=..+..+-..
T Consensus 20 LFsV~d~Di~dD~te~l~~ik~I~s~~dY~~NnnDQSVVEIcVtRit~aIRET~siE~YaAaLVDlLd~cL~hnl~p~g~ 99 (851)
T KOG3723|consen 20 LFSVDDSDIEDDLTEALEQIKIISSSSDYQTNNNDQSVVEICVTRITTAIRETESIEKYAAALVDLLDSCLEHNLRPFGK 99 (851)
T ss_pred cccCChHHHHhHHHHHHHHHHHhhcCcccccCCCcchhhhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccCccCCC
Q ss_pred -----HHHHHHHHHH-------------------------------------------HHhhhhhhHHHHHHHHHhhcCC
Q 001247 204 -----TARRLAMNVI-------------------------------------------EQCAGKLEAGIKQFLVSSMSGD 235 (1115)
Q Consensus 204 -----~a~~la~~v~-------------------------------------------~~~~~~l~~~i~~~~~~~l~~~ 235 (1115)
|-.++|.+|+ ..-+|-|+++--.-..+++.|.
T Consensus 100 kded~PHaKIAsDi~SSiFLny~K~~~m~~a~p~av~fL~rgn~el~rn~~~ylslaai~~adLL~~hTEv~~~siLSgn 179 (851)
T KOG3723|consen 100 KDEDTPHAKIASDIMSSIFLNYNKPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILSGN 179 (851)
T ss_pred CCCCCchhhHHHHHHHHHHHhcCCCCceeeehhhHHHHHhccChhhcccchhhhhHHHHhhhhhccCchHHHHHHHhccc
Q ss_pred CCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCC------------CCChhhhcHH
Q 001247 236 SRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP------------GSANNEQFHS 303 (1115)
Q Consensus 236 ~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~------------~~~~~~~~~~ 303 (1115)
.-...++..+++..|+.+.+-+|.+...|.+-++..|.+.-.+..-+--.. |+....+|-+
T Consensus 180 -------~~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~~ 252 (851)
T KOG3723|consen 180 -------TMLLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHND 252 (851)
T ss_pred -------hHHHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccchh
Q ss_pred HHHHHHhcccCCChhHHHHHHHHhHHHHhcCCC
Q 001247 304 VFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS 336 (1115)
Q Consensus 304 ~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~ 336 (1115)
.-..-|+...-.+|..=....++...+...+|.
T Consensus 253 i~~~Ilk~ia~~~pv~l~~~~E~l~e~~~~~p~ 285 (851)
T KOG3723|consen 253 IILNILKEIAVYEPVALNSFLEMLKEIGERFPY 285 (851)
T ss_pred HHHHHHHHHHhcCccchhhHHHHHHHHHHhCCC
No 175
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=26.06 E-value=3.6e+02 Score=33.92 Aligned_cols=173 Identities=13% Similarity=0.083 Sum_probs=101.3
Q ss_pred hhccccCCchHHHHHHHHHHHHhhcC---CCCChhhhcHHHHH--HHHhcccCCChhHHHHHHHHhHH------HHhcCC
Q 001247 267 LTGELLTDQLDTRLKAVGLVGDLFAV---PGSANNEQFHSVFS--EFLKRLTDRIVAVRMSVLEHVKS------CLLTDP 335 (1115)
Q Consensus 267 Le~eL~se~~~~R~~At~~lg~m~s~---~~~~~~~~~~~~~~--~fL~R~~D~s~~VR~~~v~~~~~------il~~~~ 335 (1115)
...+|.+-++..|..+..-.--|--. .+....++.-.++. .-.-..-=++..+|.+|..+-+. +|.+.+
T Consensus 336 ~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~ 415 (678)
T KOG1293|consen 336 ICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGL 415 (678)
T ss_pred HHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34567777888887765432211110 01122222222222 11112223467788888776554 455555
Q ss_pred CCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHH-----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 336 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-----TVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 336 ~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~-----~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
.+ .++...|-.-|+||+-.|-..+.-++|-+.. .+...-.. -++.+..-+.|+-+.+|+.+...|= +.
T Consensus 416 ~~---~dv~~plvqll~dp~~~i~~~~lgai~NlVm-efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr---~l 488 (678)
T KOG1293|consen 416 KR---NDVAQPLVQLLMDPEIMIMGITLGAICNLVM-EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLR---HL 488 (678)
T ss_pred cc---chhHHHHHHHhhCcchhHHHHHHHHHHHHHh-hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHH---HH
Confidence 43 3678888888999999999999999987643 22222222 3557889999999999987766653 33
Q ss_pred hhhhccCCCcchhhcccchHHHhhhhhccCCCchhHHHH
Q 001247 411 CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESV 449 (1115)
Q Consensus 411 ~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~~ve~v 449 (1115)
.+..- ...-.+-+.-||...+.+ |+||++...-|+.
T Consensus 489 ~f~~d--e~~k~~~~~ki~a~~i~~-l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 489 MFNCD--EEEKFQLLAKIPANLILD-LINDPDWAVQEQC 524 (678)
T ss_pred Hhcch--HHHHHHHHHHhhHHHHHH-HHhCCCHHHHHHH
Confidence 33210 001123468889888876 5888664444444
No 176
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=25.98 E-value=1.9e+02 Score=29.31 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=47.4
Q ss_pred chhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhCCcCccccH------HHHHHHHhhc-cccchHhHHHHHHHhhc
Q 001247 602 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKEE-NEIIKEGILHVLAKAGG 674 (1115)
Q Consensus 602 n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~------~~L~~~l~~~-~~~~~~~~L~~L~~~~~ 674 (1115)
-++.+..|-+++.. +|..-.-.|..||..+.+.+...|..++ ++|.+++... ++.+...+|..+..|+.
T Consensus 39 ~k~a~ral~krl~~----~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 39 PKYAMRALKKRLLS----KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 35666666666632 2222335678888888888888887764 6677766542 33466788888888886
Q ss_pred chH
Q 001247 675 TIR 677 (1115)
Q Consensus 675 ~~~ 677 (1115)
.++
T Consensus 115 ~f~ 117 (142)
T cd03569 115 AFR 117 (142)
T ss_pred HhC
Confidence 543
No 177
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=25.54 E-value=6.7e+02 Score=25.09 Aligned_cols=68 Identities=19% Similarity=0.158 Sum_probs=39.9
Q ss_pred HHHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHH----HhhcchHhhhhcccchHHHHHHHHhhcCC
Q 001247 629 MDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLA----KAGGTIREQLAATSSSVDLLLERLCLEGS 699 (1115)
Q Consensus 629 ~~LL~~iS~~~P~lf~~~~~~L~~~l~~~~~~~~~~~L~~L~----~~~~~~~~~~~~~~~~l~~~L~~la~~Gt 699 (1115)
.++-..|... |.-=+..++.|.+=|.+.++.+.-.+|.+|- ++|..+...+. +..|...|.+++....
T Consensus 27 l~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~--~~~fl~~l~~l~~~~~ 98 (140)
T PF00790_consen 27 LEICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVA--SKEFLDELVKLIKSKK 98 (140)
T ss_dssp HHHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHT--SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHh--HHHHHHHHHHHHccCC
Confidence 3444444443 4444555566666677766655555555554 55555555443 4568888999888654
No 178
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=25.34 E-value=2.3e+02 Score=24.52 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=42.5
Q ss_pred hHHHHHHHHccccCCCCCChHHHHHHHHHHHHHHhhcCCCCchhhHHhHH-HHHHHhcchhhhcC
Q 001247 4 KLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQ-PFLNAIVQPVLLKH 67 (1115)
Q Consensus 4 ~~~~~~~~~g~~l~~~~~~~~~Ll~rL~~l~~~L~~~~Q~~~~~~~~~l~-~~~~~L~~~~lL~h 67 (1115)
.+++-|..+|.+.--.|.+.+| +.++-++.+.-.+-+.+ -.++++ ++..-|.||.||-.
T Consensus 2 ~a~~~l~~Fa~rAfRRp~~~~e-~~~~~~~~~~~~~~g~~----~~~a~~~~l~aiL~SP~FLY~ 61 (64)
T PF07637_consen 2 CAREILRRFARRAFRRPLTDEE-VDRYLALYDSARAQGED----FEEALKEALQAILCSPSFLYR 61 (64)
T ss_pred hHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCcchhcc
Confidence 4678899999999999999888 88887777766654343 334554 44455678888743
No 179
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=25.00 E-value=1.9e+02 Score=29.09 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=58.8
Q ss_pred HHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhc-----CCCCHHHHHHHHHhhccCChh----HHHH
Q 001247 329 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL-----NSIPVETVKLVAERLRDKSVL----VKRY 399 (1115)
Q Consensus 329 ~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l-----~~v~~~~l~~l~eR~rDKk~~----VR~~ 399 (1115)
+.+..++ ....+.+++|.+||...+.+|-.-|+..+..+....- ...+.+.+..+...+.+++.. ||+.
T Consensus 31 D~i~~~~--~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k 108 (140)
T PF00790_consen 31 DLINSSP--DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEK 108 (140)
T ss_dssp HHHHTST--THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHH
T ss_pred HHHHcCC--ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHH
Confidence 3344443 3467999999999999999999999998887776432 234667888888888887764 7777
Q ss_pred HHHHHHHHHHHhh
Q 001247 400 TMERLADIFRGCC 412 (1115)
Q Consensus 400 Ai~~L~~ly~~~~ 412 (1115)
++..+.. |...+
T Consensus 109 ~l~ll~~-W~~~f 120 (140)
T PF00790_consen 109 ILELLQE-WAEAF 120 (140)
T ss_dssp HHHHHHH-HHHHT
T ss_pred HHHHHHH-HHHHH
Confidence 7766554 44444
No 180
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.53 E-value=1.5e+03 Score=28.45 Aligned_cols=283 Identities=14% Similarity=0.165 Sum_probs=169.4
Q ss_pred CChhhHHH-HHHHHHhhhhhhhhccCC-chHHHHHHHHHHHHhhcCCChh-cHHHHHHHHHHHHhcccccccHHHHHHHH
Q 001247 118 PSFGRRVV-ILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPE-SVLSSMQTIMIVLLEESEDIQEDLLVILL 194 (1115)
Q Consensus 118 ~~~~~~~~-lLe~la~vks~vl~~dl~-~~~li~~lF~~~~~~v~~~~~~-~v~~~m~~Il~~vI~e~~~i~~~~ld~il 194 (1115)
..|.++.. .||-=--||-++.-.|.+ -+.+|.++-..|--....++.+ .+..........=++.. .--..++.+++
T Consensus 12 KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~-~Y~~~iv~Pv~ 90 (675)
T KOG0212|consen 12 KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA-GYLEKIVPPVL 90 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH-HHHHHhhHHHH
Confidence 44555532 222222344555444443 2466666666655432222222 12222222222222222 24556777778
Q ss_pred HhhcCCCch-------HHHHHHHHHHHHhhhhhhHHHHHHHHHhh------cCCCCCCCCcchHHHHHHHHHhh-----C
Q 001247 195 SALGRNKND-------TARRLAMNVIEQCAGKLEAGIKQFLVSSM------SGDSRPGHSHIDYHEVIYDVYRC-----S 256 (1115)
Q Consensus 195 ~~~~~~~~~-------~a~~la~~v~~~~~~~l~~~i~~~~~~~l------~~~~~~~~~~~~~h~li~el~~~-----~ 256 (1115)
.+|...... +.|++|+- |-. .+--||+++. ..|+.. .....-+++-.+.+- +
T Consensus 91 ~cf~D~d~~vRyyACEsLYNiaKv----~k~----~v~~~Fn~iFdvL~klsaDsd~--~V~~~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 91 NCFSDQDSQVRYYACESLYNIAKV----AKG----EVLVYFNEIFDVLCKLSADSDQ--NVRGGAELLDRLIKDIVTESA 160 (675)
T ss_pred HhccCccceeeeHhHHHHHHHHHH----hcc----CcccchHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHhccccc
Confidence 888654332 44655542 222 3334555443 222111 111233333333332 1
Q ss_pred ch-hhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHh---
Q 001247 257 PQ-ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL--- 332 (1115)
Q Consensus 257 P~-lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~--- 332 (1115)
++ -|...||.|.+-+..-++..|.-.+.-+--+.+.|+.++..--|+.+.-.++=-.|-+++||..+=....++|.
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 11 26678999999999999999999999999999999999988889999988888999999999877776666664
Q ss_pred cCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCCh-hHHHHHHHH---HH
Q 001247 333 TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSV-LVKRYTMER---LA 405 (1115)
Q Consensus 333 ~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v---~~~~l~~l~eR~rDKk~-~VR~~Ai~~---L~ 405 (1115)
+.|+.-+..+.++-+...+.-+++..+..|+.-+.++.+.....+ -..++..+..-+-|+-. +++..|... |.
T Consensus 241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 567653446888999999999999999999888887765443322 12345566666777766 455554333 44
Q ss_pred HHHHHh
Q 001247 406 DIFRGC 411 (1115)
Q Consensus 406 ~ly~~~ 411 (1115)
++...+
T Consensus 321 ~l~s~~ 326 (675)
T KOG0212|consen 321 KLVSSE 326 (675)
T ss_pred HHHhhh
Confidence 444443
No 181
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=24.51 E-value=3e+02 Score=28.76 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=44.0
Q ss_pred hHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHH
Q 001247 318 AVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVK 397 (1115)
Q Consensus 318 ~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR 397 (1115)
..|..|+-.++.+.. .....++++.+...+.|.+.-||.++--++.+++.. -|..++..+.....+...-..
T Consensus 121 ~rR~~~~~~~~~~~~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~----~~~~v~~~l~~~~~~~~~~t~ 192 (197)
T cd06561 121 VRRAAIVLLLRLIKK----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK----DPERVIAFLEKNGLSMPRLTL 192 (197)
T ss_pred HHHHHHHHHHHHHHh----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHhCChHHH
Confidence 445556666554443 112456777777777788888888877777776666 344555555444444433444
Q ss_pred HHH
Q 001247 398 RYT 400 (1115)
Q Consensus 398 ~~A 400 (1115)
++|
T Consensus 193 r~a 195 (197)
T cd06561 193 RYA 195 (197)
T ss_pred HHH
Confidence 443
No 182
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=24.18 E-value=1.5e+03 Score=28.53 Aligned_cols=238 Identities=11% Similarity=0.135 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhhc-CCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC----CChHHHHHHH------
Q 001247 279 RLKAVGLVGDLFA-VPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR----ADAPQILTAL------ 347 (1115)
Q Consensus 279 R~~At~~lg~m~s-~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~----~~~~~l~~~l------ 347 (1115)
|...-.++-.-=+ -|..+.+++-.++|...-.|.. ..+.|-..|..+-..+..+-+. .+.+.|+..+
T Consensus 111 ~~e~K~l~kerK~~rp~~~~~qe~kslWEkLR~k~~--~ke~R~klv~el~~likg~i~~lv~aHDtSRViQt~Vky~s~ 188 (652)
T KOG2050|consen 111 RKERKKLLKERKSKRPTYEISQEAKSLWEKLRRKTT--PKEERDKLVSELYKLIKGKISKLVFAHDTSRVIQTCVKYGSE 188 (652)
T ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHhcCH
Confidence 4444444433222 2455678888999987655544 5678888887766544322100 0111222211
Q ss_pred ------HHHcCCchhHHHHHHHHHHHHh-hhhhcCCCCHHHHHHHHHhhccCC-hhHH-HHHHHHHHHHHHHhhhhccCC
Q 001247 348 ------CDRLLDFDENVRKQVVAVICDV-ACHALNSIPVETVKLVAERLRDKS-VLVK-RYTMERLADIFRGCCLRNFNG 418 (1115)
Q Consensus 348 ------~~rL~D~DekVR~aaV~~i~~l-a~~~l~~v~~~~l~~l~eR~rDKk-~~VR-~~Ai~~L~~ly~~~~~~~~~~ 418 (1115)
..-|. .+-|+++.-+ ++.. ...-|+.-+......+..=+|--- .-.| ++|--.+...|+.+..-.
T Consensus 189 ~~r~~if~eL~--p~~v~l~ksk-Y~k~~v~KmLkyGsk~q~a~iI~sl~Ghv~kLlRH~eaa~Vve~ay~~~A~l~--- 262 (652)
T KOG2050|consen 189 AQREQIFEELL--PFFVELAKSK-YAKFFVQKMLKYGSKAQKAKIINSLRGHVVKLLRHREAAYVVEYAYNDFATLE--- 262 (652)
T ss_pred HHHHHHHHHHh--HHHHHHHHhH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhhccHH---
Confidence 11111 1223332111 1111 112234444443322221111100 0112 245566777777653210
Q ss_pred CcchhhcccchHHHhhhhhccCCC------chhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 001247 419 SINQNEFEWIPGKILRCLYDKDFG------SDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQR 492 (1115)
Q Consensus 419 ~~~~~~~~wIP~~il~~~y~~d~~------~~~ve~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~ 492 (1115)
+ -..++.-||.+.+. ...++.++.+ .++.|...+-++...+++-.-|....+ .-
T Consensus 263 ----Q-----r~~li~EfYG~efqlfK~sn~~Tl~kil~~-------~pekk~~I~~~l~~~I~~v~eKg~v~~----ti 322 (652)
T KOG2050|consen 263 ----Q-----RQYLIQEFYGDEFQLFKDSNDKTLDKILAE-------APEKKASILRHLKAIITPVAEKGSVDH----TI 322 (652)
T ss_pred ----H-----HHHHHHHHhhHHHHHHhccCcccHHHHHHh-------ChHhHHHHHHHHHHHhHHHhhcchhHH----HH
Confidence 1 12233344443321 2367777653 457787777778887777665544432 45
Q ss_pred HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHh--hhcCCchhHHHHHHHHHhhhhHH
Q 001247 493 LQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMS--RSFAEPAKAEENFLILDQLKDAN 550 (1115)
Q Consensus 493 ~~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls--~~fpd~~ka~~~l~kf~~l~D~r 550 (1115)
+-.+|..|+..|.. ++...-++.....+. .+-||..++.=.+-.++..+||+
T Consensus 323 vHk~mlEy~~~ade------~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK 376 (652)
T KOG2050|consen 323 VHKLMLEYLTIADE------EEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERK 376 (652)
T ss_pred HHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHH
Confidence 77889999988633 333333333333332 23377777654444455567765
No 183
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=23.88 E-value=1.3e+02 Score=37.94 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=82.4
Q ss_pred CchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCC
Q 001247 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1115)
Q Consensus 256 ~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~ 335 (1115)
.++.-..++|.|-.-+.+.|..+|..-.+-+-+....-. =-.-....|-.+..=++|.++.+|..-|++...+.-.-.
T Consensus 324 ~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt--~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 324 EEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT--KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred ccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC--HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc
Confidence 444666788888888999999999876665554443211 112446678889999999999999999998876543222
Q ss_pred CCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001247 336 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1115)
Q Consensus 336 ~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1115)
.+..-.|+++.|.+.-.|.+-..|-.++-.++.++.
T Consensus 402 ~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 402 KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAP 437 (690)
T ss_pred hhhhcHHHHHHHHhhCccccCcccccceeeeccccc
Confidence 223446899999988889999999887766665554
No 184
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=23.46 E-value=1.7e+03 Score=28.91 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=23.1
Q ss_pred cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHH
Q 001247 313 TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVA 364 (1115)
Q Consensus 313 ~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~ 364 (1115)
.|.=+.|+..+++.+-.+|.+.|+ .+..++..+-.+|-||+-|+=..|.-
T Consensus 314 ~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsy 363 (988)
T KOG2038|consen 314 KDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASY 363 (988)
T ss_pred cccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHH
Confidence 344444555555555554444443 22344444444555555444444333
No 185
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=23.40 E-value=1.2e+03 Score=27.16 Aligned_cols=167 Identities=13% Similarity=0.181 Sum_probs=88.8
Q ss_pred HHhhcCCCCCCCCcchHHHHHHHHHhh-CchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCC-CCC------hhhh
Q 001247 229 VSSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSA------NNEQ 300 (1115)
Q Consensus 229 ~~~l~~~~~~~~~~~~~h~li~el~~~-~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~-~~~------~~~~ 300 (1115)
.+++.|++.........+.|..|+++. .-.+|...+|.|+. +.|..++..++.++... +.. +...
T Consensus 49 K~IL~G~~e~ep~~e~v~qLa~Ei~~~dll~~Li~~L~~L~f-------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~ 121 (335)
T PF08569_consen 49 KEILYGDGEPEPNPEQVAQLAQEIYRSDLLYLLIRNLPKLDF-------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLER 121 (335)
T ss_dssp HHHHHS-SS----HHHHHHHHHHHHHHTHHHHHHHTGGGS-H-------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHHHhhhCCC-------cccccHHHHHHHHHhhccCCCCCchHHHHHh
Confidence 456677654444444578888888887 23344455666665 48999999999998764 222 3456
Q ss_pred c-HHHHHHHHhcccCCChhHHHHHH-------H-HhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001247 301 F-HSVFSEFLKRLTDRIVAVRMSVL-------E-HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1115)
Q Consensus 301 ~-~~~~~~fL~R~~D~s~~VR~~~v-------~-~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1115)
| |++....+.-..+.+..+=...+ + .+..+| .++ ....+-+-...+.=.|=..|..++.++-.
T Consensus 122 ~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL-~~~-------~f~~ff~~~~~~~Fdiasdaf~t~~~llt 193 (335)
T PF08569_consen 122 HRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIIL-YSE-------CFWKFFKYVQLPNFDIASDAFSTFKELLT 193 (335)
T ss_dssp --THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHH-TSG-------GGGGHHHHTTSSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHh-CcH-------HHHHHHHHhcCCccHhHHHHHHHHHHHHh
Confidence 7 88888888777765543322111 0 111111 111 11122333445555555555555555433
Q ss_pred hhcCCCCH-------HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 372 HALNSIPV-------ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 372 ~~l~~v~~-------~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
.+-..++. ..+......+.-.+.-.|+.+++.||.+--.
T Consensus 194 ~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 194 RHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp SSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 22222211 2344556667777778888888888887654
No 186
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=23.31 E-value=4e+02 Score=27.05 Aligned_cols=72 Identities=18% Similarity=0.125 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhc-----CCCCHHHHHHHHHhhcc-CChhHHHHHHHHHHHHHHH
Q 001247 339 DAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL-----NSIPVETVKLVAERLRD-KSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 339 ~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l-----~~v~~~~l~~l~eR~rD-Kk~~VR~~Ai~~L~~ly~~ 410 (1115)
..++.+++|.+|+...+.+|=+.|+..+..+....- +..+.+.+..+...+.+ ....||..++..+-.....
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999998887775332 33466677777777766 4678999888777664433
No 187
>COG5079 SAC3 Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]
Probab=22.93 E-value=58 Score=39.26 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=57.2
Q ss_pred HHHHhcCCCCCCccchhcHHHHHHHHHHHHHHHHHhhcccccccccccccccHHHHHHHHHHhhccccccccccccchHH
Q 001247 967 LVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEASNKESISVIISIFRSIKCSEDIVDAAKSKNSHA 1046 (1115)
Q Consensus 967 LIhlLAHH~~pd~~~~~~~~~~~~~~~~l~F~l~~l~~~~e~~~~~~a~~eN~sll~~la~riKq~~Da~~~~~s~~ly~ 1046 (1115)
.+|+|+|| |.|..-.+++++... | ..++=+|-..+..|..-|.- ...|+
T Consensus 195 ~lh~L~~~--p~Fs~qqeleQL~ks----------L--------------~sL~elYdd~r~~~~~cpne-----aEFra 243 (646)
T COG5079 195 FLHLLHDH--PHFSKQQELEQLKKS----------L--------------ASLIELYDDGRAGKKECPNE-----AEFRA 243 (646)
T ss_pred HHHHHhcC--ccccHHhHHHHHHHH----------H--------------HHHHHHHHHHHhhcCCCCCH-----HHHHH
Confidence 67999999 888765566666532 1 12444566666666555521 11111
Q ss_pred HHHhHHHHHHHHhcc--CCCCCcccccc--CCCccc----ccCCCCcchhhhhhhhhhhhHHHHHhhhhheee
Q 001247 1047 ICDLGLSITKRLSRM--EDNSQGVFSSV--SLPSTL----YKPYEKKEGDDSLVSSLLTEFCFALASSFYRII 1111 (1115)
Q Consensus 1047 l~DLaq~ii~~~~~k--~w~l~~yPgkv--~LP~~l----f~p~~s~~ea~~~~~~~~~~~~~~~~~~~~~~~ 1111 (1115)
-+||-.+-.- .-.+|.|||-+ .+|..+ ++... ..+..+-+...||-|+-|..+|+.+|
T Consensus 244 -----YaiL~slgDp~yv~~iq~wp~~if~d~~vq~alkl~~laq--~nn~r~~~~rnteac~nlytrFfkl~ 309 (646)
T COG5079 244 -----YAILASLGDPRYVAGIQGWPGGIFCDLPVQIALKLMQLAQ--SNNFRLLGRRNTEACFNLYTRFFKLI 309 (646)
T ss_pred -----HHHHHHhCCchhhhccccCCccccccchHHHHHHHHHHhh--ccCeeeccccchhhhhHHHHHHHHHH
Confidence 1122222211 12466677655 233222 22211 22334446678999999999998765
No 188
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.78 E-value=4.3e+02 Score=28.22 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=66.5
Q ss_pred hhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchH-------HHHHHHHHHHhccCCCCCCCCC
Q 001247 47 SILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDV-------LKDIFQLIVGTFSGLKDTGGPS 119 (1115)
Q Consensus 47 ~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~-------lkdif~l~~~~~~~L~d~~~~~ 119 (1115)
.|-...+.++..|+...+=.+....-++++++||+-|--==.||.-|+.+. --.||..+-+.+.. .
T Consensus 30 ~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~E~~~----~--- 102 (200)
T cd00280 30 EDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVLESIEKEFSL----P--- 102 (200)
T ss_pred HHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHHHHHhcCC----c---
Confidence 466777888888888777667777788999999886655556899997643 34555555554431 1
Q ss_pred hhhHHHHHHHHHhhhhhhhhccCCchHHHHHHHHHHHH
Q 001247 120 FGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFA 157 (1115)
Q Consensus 120 ~~~~~~lLe~la~vks~vl~~dl~~~~li~~lF~~~~~ 157 (1115)
..-+...+.+-.+...++|..-.--+.-.++++.+|+
T Consensus 103 -~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 103 -ETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 1234445555566666666554334566666777766
No 189
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=22.53 E-value=1e+03 Score=26.00 Aligned_cols=75 Identities=21% Similarity=0.187 Sum_probs=49.8
Q ss_pred HHHHHHhhCchhhhhhhhhhhccc-cCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcc-cCCChhHHHHHHH
Q 001247 248 VIYDVYRCSPQILSGVVPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRL-TDRIVAVRMSVLE 325 (1115)
Q Consensus 248 li~el~~~~P~lL~~Vip~Le~eL-~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~-~D~s~~VR~~~v~ 325 (1115)
-+..+-+..|+-=..+++.|..=| ..+++..+..|.+.+.-+..+. +-.+..+|+...+++ .|..|.|=..+.+
T Consensus 107 s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~----vvd~~s~w~vl~~~l~~~~rp~v~~~l~~ 182 (234)
T PF12530_consen 107 SIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE----VVDFYSAWKVLQKKLSLDYRPLVLKSLCS 182 (234)
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHhcCCccchHHHHHHHH
Confidence 344444555664444566666666 7899999999999999999542 456678999988887 3444444433333
Q ss_pred H
Q 001247 326 H 326 (1115)
Q Consensus 326 ~ 326 (1115)
.
T Consensus 183 l 183 (234)
T PF12530_consen 183 L 183 (234)
T ss_pred H
Confidence 3
No 190
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=22.28 E-value=1.9e+02 Score=30.78 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=51.6
Q ss_pred HhhCchhhh--hhhhhhhccccCCchHHHHHHHHHHHHhhcC-CCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHH
Q 001247 253 YRCSPQILS--GVVPYLTGELLTDQLDTRLKAVGLVGDLFAV-PGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKS 329 (1115)
Q Consensus 253 ~~~~P~lL~--~Vip~Le~eL~se~~~~R~~At~~lg~m~s~-~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~ 329 (1115)
|++.|+-|- ..+|.+=+-|+-.+.+.|..|.+.+-+|+.. .+..+.-.=|.+-..--.-.+-++++|....++....
T Consensus 27 W~~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~ 106 (183)
T PF10274_consen 27 WKVDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQ 106 (183)
T ss_pred EecChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 777777764 4889999999999999999999999999987 2222222223333333333444445555555555444
Q ss_pred HHhc
Q 001247 330 CLLT 333 (1115)
Q Consensus 330 il~~ 333 (1115)
++.+
T Consensus 107 Lv~~ 110 (183)
T PF10274_consen 107 LVTS 110 (183)
T ss_pred HHHh
Confidence 4433
No 191
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=22.12 E-value=2.5e+02 Score=28.45 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhCCcCccccH------HH-HHHHHhhc-c--ccchHhHHHHHHHh
Q 001247 603 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EE-LVNLLKEE-N--EIIKEGILHVLAKA 672 (1115)
Q Consensus 603 ~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~------~~-L~~~l~~~-~--~~~~~~~L~~L~~~ 672 (1115)
++.+..|-+++.. +.|..-.-.|+.||..+.+.+...|..++ ++ |++++... + ..+...+|..+..|
T Consensus 37 k~a~ralkkRl~~---~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W 113 (141)
T cd03565 37 KDAVRALKKRLNG---NKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAW 113 (141)
T ss_pred HHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHH
Confidence 4556666665532 11111233467788888888887777543 56 77777632 2 24567788888888
Q ss_pred hcchH
Q 001247 673 GGTIR 677 (1115)
Q Consensus 673 ~~~~~ 677 (1115)
+..++
T Consensus 114 ~~~f~ 118 (141)
T cd03565 114 ADAFR 118 (141)
T ss_pred HHHhC
Confidence 86543
No 192
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.87 E-value=1.2e+03 Score=30.81 Aligned_cols=194 Identities=18% Similarity=0.220 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCC--chHHHHHHHHHHHHhhcCCChhcHHHHHHHHH
Q 001247 98 LKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE--CDELVNEMYSTFFAVASDDHPESVLSSMQTIM 175 (1115)
Q Consensus 98 lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~--~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il 175 (1115)
|..-|.+.-.-|.+-+|...|.|.-.-+.|+- -|+|+-+. ...+..+ .-+-+++......+|=
T Consensus 1036 L~~~~~f~~~vFs~sgd~g~~~f~~s~r~l~~------Sv~~~~i~~~~~l~~LR---------~~n~~~~~~~~vSdik 1100 (1525)
T COG5219 1036 LGENHHFVEKVFSLSGDLGLPSFRCSDRKLEQ------SVLLERIGPRAILYVLR---------KHNVPPQFVASVSDIK 1100 (1525)
T ss_pred HhhhhhhhhhheecccccCccHHHHHHHHHHh------hHhhccCCchHHHHHHH---------HccCcHHHHHhhccch
Confidence 45555555556776677777766655555543 12233322 1111111 1123455555566666
Q ss_pred HHHhcccccccHHHHHHHHHhhcCCCch----HHHHHHHHHHHHhhhhhhHHHHHHHHH---hhcCCCCCCCCcchHHHH
Q 001247 176 IVLLEESEDIQEDLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGIKQFLVS---SMSGDSRPGHSHIDYHEV 248 (1115)
Q Consensus 176 ~~vI~e~~~i~~~~ld~il~~~~~~~~~----~a~~la~~v~~~~~~~l~~~i~~~~~~---~l~~~~~~~~~~~~~h~l 248 (1115)
-.+.|..|++..-+++.++-++...++. .-++.--.++..|.-|.-+. ||+.- ....++ +
T Consensus 1101 d~IvEsndsmn~lLlkflFthfs~lrN~~~sr~~~q~l~k~~~~~p~k~ves--Qy~e~fp~~~N~~d-----------~ 1167 (1525)
T COG5219 1101 DCIVESNDSMNYLLLKFLFTHFSYLRNEALSRAVSQLLLKCRKGFPIKFVES--QYFEGFPEFPNADD-----------E 1167 (1525)
T ss_pred hhhhhcchHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHhCCCchhhhh--hhhhcCcccCCchh-----------H
Confidence 6666667889999999888887654432 34555555556655443333 45432 221111 1
Q ss_pred HHHHHhhCchhhhhhhhhhhccccCCch--HH-----------HHHHHHHHHHhhcCCCCCh------------hhhcHH
Q 001247 249 IYDVYRCSPQILSGVVPYLTGELLTDQL--DT-----------RLKAVGLVGDLFAVPGSAN------------NEQFHS 303 (1115)
Q Consensus 249 i~el~~~~P~lL~~Vip~Le~eL~se~~--~~-----------R~~At~~lg~m~s~~~~~~------------~~~~~~ 303 (1115)
.++...++.|-.+|++|+. .+ |.+.-+.+.+||--||--+ ...|=.
T Consensus 1168 ---------qmesv~mk~LreKls~d~~El~l~~~~~s~y~~d~Sl~~~~v~~~i~~Pgd~l~~v~k~ey~e~~~~vYL~ 1238 (1525)
T COG5219 1168 ---------QMESVCMKFLREKLSADDNELLLMLLAKSNYRNDRSLDMKGVVRMIERPGDHLLSVKKEEYRERHTIVYLP 1238 (1525)
T ss_pred ---------HHHHHHHHHHHHhhhhhhHHHHHHHHHHhCCCcccccCHhHHHHHhccccchhhhcCHHHHHHHhhHHHHH
Confidence 4455556666666666654 33 4445678999998887333 124677
Q ss_pred HHHHHHhcccCCChhHHHHHHHHhH
Q 001247 304 VFSEFLKRLTDRIVAVRMSVLEHVK 328 (1115)
Q Consensus 304 ~~~~fL~R~~D~s~~VR~~~v~~~~ 328 (1115)
+|+--++-|.|.+-.+|...+++..
T Consensus 1239 ~w~lI~~hf~dT~yNm~~siI~qL~ 1263 (1525)
T COG5219 1239 LWRLIYGHFADTVYNMYSSIISQLD 1263 (1525)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 8999999999999999999988864
No 193
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=21.42 E-value=4.3e+02 Score=26.32 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=55.1
Q ss_pred ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC-----CCCHHHHHHHHHhhccCCh-h-HHHHHHHHHHHHHHHh
Q 001247 339 DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN-----SIPVETVKLVAERLRDKSV-L-VKRYTMERLADIFRGC 411 (1115)
Q Consensus 339 ~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~-----~v~~~~l~~l~eR~rDKk~-~-VR~~Ai~~L~~ly~~~ 411 (1115)
...+.+.+|.+||...++.|=+-|+..+..+....-. ..+.+.+..+...+.++.. . ||+.++..+..-+..+
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999988877764322 2355677777777777664 2 8888888777666654
No 194
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=21.40 E-value=1.3e+02 Score=29.83 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=44.3
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHH
Q 001247 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVET 381 (1115)
Q Consensus 302 ~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~ 381 (1115)
..+=.-.++|.+|++|-|..++++...+++...+ .+....+++.+ ..|+. +..+...|+++
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~-----~~f~~~~~~~~---------~~Ik~-----~~~f~g~~Dp~ 97 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN-----SDFKRELQRNS---------AQIRE-----CANYKGPPDPL 97 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC-----HHHHHHHHHhH---------HHHHH-----HHHcCCCCCcc
Confidence 3444455667777777777777777766555332 13333333332 12221 22333322221
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 382 VKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 382 l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
...|-...||.+|-+.+.-+|+.
T Consensus 98 ------~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 98 ------KGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred ------cCcchhHHHHHHHHHHHHHHhcc
Confidence 22333456888888888888764
No 195
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.32 E-value=5.1e+02 Score=33.43 Aligned_cols=129 Identities=16% Similarity=0.215 Sum_probs=89.9
Q ss_pred cchHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHH
Q 001247 242 HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRM 321 (1115)
Q Consensus 242 ~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~ 321 (1115)
..+.-..|-+.+--.|+.+..|+..+|+ .|-.+|+-|++++.-+++..+.
T Consensus 106 sdd~g~~iae~fik~qd~I~lll~~~e~----~DF~VR~~aIqLlsalls~r~~-------------------------- 155 (970)
T KOG0946|consen 106 SDDLGLWIAEQFIKNQDNITLLLQSLEE----FDFHVRLYAIQLLSALLSCRPT-------------------------- 155 (970)
T ss_pred hhHHHHHHHHHHHcCchhHHHHHHHHHh----hchhhhhHHHHHHHHHHhcCCH--------------------------
Confidence 3356667788888889999999988887 7999999999999999988662
Q ss_pred HHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC---CCH-----HHHHHHHHhhccCC
Q 001247 322 SVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS---IPV-----ETVKLVAERLRDKS 393 (1115)
Q Consensus 322 ~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~---v~~-----~~l~~l~eR~rDKk 393 (1115)
.+.+++..+|. =+..+.+-|.|+.|-||-+++-.++++...+.+. |-. .++..+-+-..=.-
T Consensus 156 ----e~q~~ll~~P~------gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dG 225 (970)
T KOG0946|consen 156 ----ELQDALLVSPM------GISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDG 225 (970)
T ss_pred ----HHHHHHHHCch------hHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 23456777774 2345667889999999999999999887644331 111 12222222221122
Q ss_pred hhHHHHHHHHHHHHHHH
Q 001247 394 VLVKRYTMERLADIFRG 410 (1115)
Q Consensus 394 ~~VR~~Ai~~L~~ly~~ 410 (1115)
--|=.+|+..|-++-+.
T Consensus 226 gIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 226 GIVVEDCLILLNNLLKN 242 (970)
T ss_pred cchHHHHHHHHHHHHhh
Confidence 35777899998888775
No 196
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=21.09 E-value=5.9e+02 Score=24.32 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHH-----HHHHH------HHhhccCChhHHHHHHHHHH
Q 001247 339 DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-----TVKLV------AERLRDKSVLVKRYTMERLA 405 (1115)
Q Consensus 339 ~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~-----~l~~l------~eR~rDKk~~VR~~Ai~~L~ 405 (1115)
...++.+.|.+||.+.+++|-+.|...+-.+....-..+-.+ .+..+ ....+|....||+.+...+.
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 467899999999999999999999888877765443322221 12111 11123445678887766543
No 197
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=21.03 E-value=1.4e+03 Score=26.79 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=57.9
Q ss_pred hhhccccCCchHHHHHHHHHHHHhhcCCC-CChhhhc---HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC-Ch
Q 001247 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQF---HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA-DA 340 (1115)
Q Consensus 266 ~Le~eL~se~~~~R~~At~~lg~m~s~~~-~~~~~~~---~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~-~~ 340 (1115)
....-|.++|=-.|..++++||+++.++. .+++..| |+-....+.=..|+|..||.+...--+ +..+||... .+
T Consensus 213 ~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFK-vFVANp~K~~~I 291 (335)
T PF08569_consen 213 KYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFK-VFVANPNKPPPI 291 (335)
T ss_dssp HHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHH-HHHH-SS-BHHH
T ss_pred HHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHH-HHHhCCCCChHH
Confidence 34455778999999999999999999864 2234444 888888899999999999999876654 445566532 11
Q ss_pred --------HHHHHHHHHHcCCc
Q 001247 341 --------PQILTALCDRLLDF 354 (1115)
Q Consensus 341 --------~~l~~~l~~rL~D~ 354 (1115)
..+++.|.+-..|.
T Consensus 292 ~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 292 VDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHTHHHHHHHHHTTTTT-
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 23345555555665
Done!