Query 001247
Match_columns 1115
No_of_seqs 167 out of 297
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 18:26:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 99.2 5.4E-07 1.9E-11 115.0 48.9 623 65-759 99-792 (852)
2 4fdd_A Transportin-1; heat rep 99.0 7.8E-06 2.7E-10 104.3 48.9 640 153-832 93-803 (852)
3 2bpt_A Importin beta-1 subunit 99.0 8.1E-06 2.8E-10 103.5 48.8 630 164-868 108-817 (861)
4 1b3u_A Protein (protein phosph 99.0 7.9E-07 2.7E-11 107.5 35.4 324 64-410 18-354 (588)
5 2bpt_A Importin beta-1 subunit 98.9 5E-05 1.7E-09 96.2 53.0 336 54-410 95-483 (861)
6 1qgr_A Protein (importin beta 98.9 2.2E-05 7.4E-10 99.8 49.5 146 263-408 218-394 (876)
7 1u6g_C TIP120 protein, CAND1; 98.9 2.4E-05 8.2E-10 103.9 47.6 338 52-410 46-464 (1230)
8 1u6g_C TIP120 protein, CAND1; 98.8 4.2E-05 1.4E-09 101.5 45.5 560 259-901 130-721 (1230)
9 1qgr_A Protein (importin beta 98.8 0.00081 2.8E-08 85.2 54.8 338 64-410 136-538 (876)
10 1b3u_A Protein (protein phosph 98.8 5.7E-06 2E-10 99.9 33.3 258 146-410 45-311 (588)
11 2vgl_B AP-2 complex subunit be 98.6 5.5E-05 1.9E-09 92.6 36.2 396 264-758 15-426 (591)
12 2vgl_B AP-2 complex subunit be 98.4 0.00014 4.9E-09 88.9 34.0 124 245-374 69-192 (591)
13 1w63_A Adapter-related protein 98.4 0.0037 1.3E-07 76.8 44.8 513 264-891 36-567 (618)
14 1ibr_B P95, importin beta-1 su 98.3 0.00014 4.9E-09 84.7 28.4 329 68-411 49-439 (462)
15 2qk2_A LP04448P; mini spindles 98.2 1.6E-05 5.6E-10 85.5 16.2 147 261-411 55-207 (242)
16 2vgl_A Adaptor protein complex 98.1 0.011 3.8E-07 72.6 40.9 388 245-713 13-431 (621)
17 3ltj_A Alpharep-4; protein eng 98.1 0.00011 3.7E-09 76.2 19.0 121 262-407 76-196 (201)
18 2qk2_A LP04448P; mini spindles 98.1 1.1E-05 3.8E-10 86.9 11.2 149 259-411 12-164 (242)
19 1w63_A Adapter-related protein 98.0 0.0018 6.2E-08 79.6 30.6 121 245-373 90-210 (618)
20 3ltm_A Alpha-REP4; protein eng 98.0 0.00013 4.5E-09 76.2 17.4 125 262-411 81-205 (211)
21 3ltj_A Alpharep-4; protein eng 97.9 6.9E-05 2.4E-09 77.8 13.1 121 262-407 45-165 (201)
22 3ltm_A Alpha-REP4; protein eng 97.9 6.8E-05 2.3E-09 78.4 13.0 121 262-407 50-170 (211)
23 2jdq_A Importin alpha-1 subuni 97.8 0.0015 5E-08 76.0 24.2 147 263-409 21-179 (450)
24 2qk1_A Protein STU2; STU2P, XM 97.8 0.00021 7.2E-09 77.7 15.4 150 262-411 60-222 (249)
25 1ibr_B P95, importin beta-1 su 97.8 0.00071 2.4E-08 78.7 20.7 241 169-409 107-395 (462)
26 1wa5_B Importin alpha subunit; 97.7 0.0066 2.2E-07 72.7 26.6 396 259-717 84-512 (530)
27 4b8j_A Importin subunit alpha- 97.6 0.01 3.4E-07 71.0 27.6 392 262-716 74-497 (528)
28 2vgl_A Adaptor protein complex 97.6 0.07 2.4E-06 65.5 34.8 123 245-373 94-218 (621)
29 1oyz_A Hypothetical protein YI 97.5 0.00038 1.3E-08 76.1 12.3 132 262-407 54-186 (280)
30 1te4_A Conserved protein MTH18 97.5 2.6E-05 9.1E-10 75.7 2.6 120 262-407 12-131 (131)
31 2z6h_A Catenin beta-1, beta-ca 97.5 0.078 2.7E-06 65.1 34.3 149 259-408 11-168 (644)
32 2qk1_A Protein STU2; STU2P, XM 97.5 0.0011 3.7E-08 72.0 14.7 152 260-411 14-177 (249)
33 1oyz_A Hypothetical protein YI 97.5 0.00053 1.8E-08 74.9 12.0 123 260-407 126-248 (280)
34 2jdq_A Importin alpha-1 subuni 97.4 0.0044 1.5E-07 71.9 20.3 299 63-411 71-392 (450)
35 1wa5_B Importin alpha subunit; 97.3 0.0025 8.5E-08 76.4 15.8 333 64-411 95-459 (530)
36 4b8j_A Importin subunit alpha- 97.2 0.012 4.1E-07 70.3 21.3 150 262-411 286-445 (528)
37 2db0_A 253AA long hypothetical 97.2 0.0045 1.5E-07 62.8 13.7 212 187-409 31-246 (253)
38 4db8_A Armadillo-repeat protei 97.1 0.0026 8.7E-08 68.0 11.9 147 262-408 96-250 (252)
39 4hxt_A De novo protein OR329; 96.8 0.0014 4.9E-08 69.5 7.0 150 262-411 86-243 (252)
40 1jdh_A Beta-catenin; beta-cate 96.8 0.19 6.4E-06 59.4 26.3 150 257-407 12-170 (529)
41 2z6g_A B-catenin; FULL-length, 96.8 0.14 5E-06 64.4 26.2 149 258-407 146-303 (780)
42 4db6_A Armadillo repeat protei 96.7 0.0014 5E-08 67.9 5.7 146 263-409 13-167 (210)
43 4db6_A Armadillo repeat protei 96.6 0.0019 6.5E-08 67.0 6.1 146 262-407 54-207 (210)
44 4hxt_A De novo protein OR329; 96.6 0.0024 8.3E-08 67.6 6.5 147 262-409 44-199 (252)
45 4db8_A Armadillo-repeat protei 96.5 0.0026 9E-08 67.9 6.4 146 262-408 54-208 (252)
46 2of3_A ZYG-9; multifunctional 96.5 0.028 9.7E-07 61.2 14.2 142 265-411 49-198 (266)
47 4ffb_C Protein STU2; tubulin f 96.3 0.029 1E-06 61.4 13.4 143 263-411 11-170 (278)
48 2of3_A ZYG-9; multifunctional 96.3 0.069 2.4E-06 58.2 15.8 180 245-435 66-256 (266)
49 2db0_A 253AA long hypothetical 96.3 0.2 6.8E-06 51.0 17.5 197 161-371 42-246 (253)
50 1te4_A Conserved protein MTH18 96.1 0.009 3.1E-07 57.6 7.1 87 264-368 44-130 (131)
51 2z6g_A B-catenin; FULL-length, 96.1 0.19 6.3E-06 63.4 21.0 142 263-410 116-264 (780)
52 3tpo_A Importin subunit alpha- 95.8 0.32 1.1E-05 58.2 20.5 150 262-411 293-451 (529)
53 1xqr_A HSPBP1 protein; armadil 95.8 0.026 8.9E-07 62.7 9.9 145 263-410 82-239 (296)
54 4ffb_C Protein STU2; tubulin f 95.3 0.37 1.3E-05 52.5 16.8 147 261-410 54-213 (278)
55 3now_A UNC-45 protein, SD10334 95.1 6 0.0002 49.7 28.9 187 218-409 242-450 (810)
56 2x19_B Importin-13; nuclear tr 94.7 14 0.00046 47.2 51.3 161 245-410 427-600 (963)
57 4ady_A RPN2, 26S proteasome re 94.5 0.69 2.4E-05 58.6 18.2 146 273-438 553-699 (963)
58 3ul1_B Importin subunit alpha- 94.5 10 0.00035 44.8 32.5 148 261-409 315-478 (510)
59 3b2a_A TON_1937, putative unch 94.4 2.8 9.7E-05 44.4 19.5 136 565-706 113-252 (265)
60 1jdh_A Beta-catenin; beta-cate 94.1 1.8 6E-05 50.9 20.1 145 262-408 227-384 (529)
61 3tpo_A Importin subunit alpha- 94.0 6 0.0002 47.0 24.6 147 262-409 335-497 (529)
62 2z6h_A Catenin beta-1, beta-ca 93.7 2.6 8.9E-05 51.4 21.0 145 262-408 224-381 (644)
63 3gs3_A Symplekin, LD45768P; he 93.5 0.49 1.7E-05 51.2 12.4 131 303-436 15-153 (257)
64 2x1g_F Cadmus; transport prote 93.4 1.3 4.3E-05 57.0 18.4 160 245-410 441-616 (971)
65 3tjz_B Coatomer subunit gamma; 93.4 0.28 9.6E-06 55.7 10.6 117 246-371 89-205 (355)
66 3o2t_A Symplekin; heat repeat, 93.1 0.25 8.5E-06 56.6 9.7 131 302-435 24-162 (386)
67 1wa5_C Importin alpha RE-expor 93.0 9 0.00031 49.1 25.5 126 245-371 381-525 (960)
68 1wa5_C Importin alpha RE-expor 91.7 24 0.0008 45.2 26.8 130 276-409 375-525 (960)
69 3m1i_C Exportin-1; heat repeat 91.7 4.3 0.00015 52.7 20.0 164 245-410 433-619 (1049)
70 3tjz_B Coatomer subunit gamma; 91.2 1.4 4.6E-05 50.1 12.7 127 271-407 77-203 (355)
71 3l9t_A Putative uncharacterize 91.0 2.3 8E-05 45.1 13.4 173 218-410 33-208 (240)
72 3ul1_B Importin subunit alpha- 90.1 0.16 5.6E-06 60.5 4.1 150 262-411 274-432 (510)
73 1lrv_A LRV, leucine-rich repea 89.9 0.18 6.3E-06 54.2 3.9 91 267-405 151-242 (244)
74 4ady_A RPN2, 26S proteasome re 88.9 20 0.00067 45.6 21.4 126 273-409 589-719 (963)
75 4hat_C Exportin-1; heat repeat 88.6 68 0.0023 41.4 43.0 124 247-372 435-570 (1023)
76 3b2a_A TON_1937, putative unch 88.2 7.9 0.00027 41.1 14.4 171 250-431 25-197 (265)
77 3now_A UNC-45 protein, SD10334 87.6 67 0.0023 40.2 36.7 134 275-410 217-360 (810)
78 1xqr_A HSPBP1 protein; armadil 87.2 1.1 3.9E-05 49.4 8.0 135 274-410 52-197 (296)
79 3opb_A SWI5-dependent HO expre 86.1 13 0.00043 46.3 17.1 147 262-409 457-635 (778)
80 1lrv_A LRV, leucine-rich repea 83.0 1.5 5.2E-05 47.0 6.4 19 308-326 103-121 (244)
81 2iw3_A Elongation factor 3A; a 78.5 46 0.0016 42.6 18.5 220 182-410 48-281 (986)
82 3u0r_A Apoptosis inhibitor 5; 76.7 1.1E+02 0.0038 35.8 19.2 108 298-411 24-131 (507)
83 3u0r_A Apoptosis inhibitor 5; 70.2 30 0.001 40.4 12.5 113 245-368 48-160 (507)
84 3opb_A SWI5-dependent HO expre 69.8 6.5 0.00022 48.8 7.4 121 259-382 601-739 (778)
85 3gs3_A Symplekin, LD45768P; he 68.4 49 0.0017 35.5 13.2 130 277-411 30-175 (257)
86 3s51_A Protein FACI, fanconi a 63.5 1.2E+02 0.0041 39.7 17.2 121 247-371 424-544 (1308)
87 1vsy_5 Proteasome activator BL 62.1 19 0.00065 46.3 9.8 154 256-412 795-969 (997)
88 3oc3_A Helicase MOT1, MOT1; re 61.6 25 0.00086 41.9 9.6 132 260-403 297-430 (800)
89 1xm9_A Plakophilin 1; armadill 60.8 23 0.00079 41.1 9.6 110 263-372 3-117 (457)
90 3oc3_A Helicase MOT1, MOT1; re 60.5 15 0.00052 43.7 7.5 142 64-230 307-448 (800)
91 2iw3_A Elongation factor 3A; a 59.3 21 0.00072 45.7 9.4 145 263-410 55-205 (986)
92 3o2t_A Symplekin; heat repeat, 58.2 38 0.0013 38.6 10.4 131 278-413 41-187 (386)
93 3grl_A General vesicular trans 56.3 58 0.002 39.5 12.0 69 342-410 122-196 (651)
94 3nmw_A APC variant protein; AR 55.1 13 0.00044 42.0 5.9 147 263-410 171-335 (354)
95 1lsh_A Lipovitellin (LV-1N, LV 52.1 1.9E+02 0.0064 37.4 16.8 136 256-406 389-540 (1056)
96 3l6x_A Catenin delta-1; cateni 50.7 3.9E+02 0.013 32.0 26.9 108 605-717 356-478 (584)
97 3nmz_A APC variant protein; pr 50.3 19 0.00066 42.1 6.5 147 263-410 287-451 (458)
98 3ibv_A Exportin-T; karyopherin 47.3 2.1E+02 0.0071 36.7 16.0 293 52-371 533-870 (980)
99 3l9t_A Putative uncharacterize 46.0 86 0.0029 33.2 9.9 88 307-405 75-164 (240)
100 3l6x_A Catenin delta-1; cateni 42.9 1.2E+02 0.004 36.6 11.9 137 273-410 320-477 (584)
101 2zu6_B Programmed cell death p 42.5 68 0.0023 35.3 9.0 162 380-561 37-212 (307)
102 3nmw_A APC variant protein; AR 40.9 32 0.0011 38.7 6.2 144 261-407 126-290 (354)
103 3eiq_C Programmed cell death p 37.2 1.2E+02 0.0039 34.2 9.9 155 380-544 88-244 (358)
104 1vsy_5 Proteasome activator BL 36.4 39 0.0013 43.5 6.6 164 263-441 761-950 (997)
105 1xm9_A Plakophilin 1; armadill 31.4 1.2E+02 0.0041 34.9 9.4 109 605-717 3-118 (457)
106 1lsh_A Lipovitellin (LV-1N, LV 29.0 2.7E+02 0.0093 35.9 12.8 146 207-371 421-576 (1056)
107 1x5b_A Signal transducing adap 28.9 2.2E+02 0.0074 28.1 9.3 104 305-413 16-128 (163)
108 3gjx_A Exportin-1; transport, 28.3 8.9E+02 0.03 31.2 17.3 237 52-290 564-903 (1073)
109 3tt9_A Plakophilin-2; cell adh 27.7 1.4E+02 0.0048 31.3 8.1 65 343-407 53-122 (233)
110 3g2s_A C-terminal fragment of 26.8 2E+02 0.0068 28.0 8.5 104 304-411 11-127 (149)
111 1juq_A ADP-ribosylation factor 26.4 2.5E+02 0.0087 27.9 9.4 106 302-412 11-130 (171)
112 3ldz_A STAM-1, signal transduc 26.4 1.3E+02 0.0046 28.8 7.1 52 627-678 61-118 (140)
113 3swh_A MUNC13-1, protein UNC-1 25.0 1.4E+02 0.0048 33.3 7.9 27 245-271 237-265 (341)
114 3g2s_A C-terminal fragment of 23.7 1.3E+02 0.0045 29.3 6.5 52 626-677 66-129 (149)
115 3nmz_A APC variant protein; pr 23.7 1.2E+02 0.0041 35.2 7.3 115 602-716 328-451 (458)
116 1mhq_A ADP-ribosylation factor 22.6 1.1E+02 0.0037 29.9 5.6 87 603-698 37-135 (148)
117 1upk_A MO25 protein; transfera 22.5 8.2E+02 0.028 27.1 16.4 179 215-404 34-278 (341)
118 4gmo_A Putative uncharacterize 22.4 41 0.0014 41.2 3.2 73 262-373 35-107 (684)
119 3zyq_A Hepatocyte growth facto 22.0 4.2E+02 0.015 27.4 10.5 102 304-407 8-116 (226)
120 1ldd_A APC2WHB, anaphase promo 21.1 65 0.0022 27.8 3.2 29 80-108 28-60 (74)
121 4gmo_A Putative uncharacterize 20.5 70 0.0024 39.2 4.7 67 342-409 35-105 (684)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.16 E-value=5.4e-07 Score=115.02 Aligned_cols=623 Identities=11% Similarity=0.086 Sum_probs=323.1
Q ss_pred hcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhh-hhccC-
Q 001247 65 LKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCV-VMLDL- 142 (1115)
Q Consensus 65 L~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~v-l~~dl- 142 (1115)
|...++.||..+|-|++.|.+..-|+ -+ .+++..++..+. ++ + ......-+..+..+-.-. -..+-
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~~~~-~w-----p~ll~~L~~~l~---~~-~--~~~r~~al~~L~~i~~~~~~~~~~~ 166 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKGELQ-NW-----PDLLPKLCSLLD---SE-D--YNTCEGAFGALQKICEDSAEILDSD 166 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTTT-TC-----TTHHHHHHHHHS---CS-S--HHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HcCCCHHHHHHHHHHHHHHHHhcCcc-cc-----HHHHHHHHHHHc---CC-C--HHHHHHHHHHHHHHHHHhHHHhchh
Confidence 66788999999999999999986321 12 223333444332 21 2 222333333333211000 00000
Q ss_pred CchHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhccccc----ccHHHHHHHHHhhcCCCch---HHHHHHHHHHHH
Q 001247 143 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED----IQEDLLVILLSALGRNKND---TARRLAMNVIEQ 215 (1115)
Q Consensus 143 ~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~----i~~~~ld~il~~~~~~~~~---~a~~la~~v~~~ 215 (1115)
.....+..++..|+...++ ....|.......+..++..... .-++++..++..+...... .|...-..++..
T Consensus 167 ~~~~~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 167 VLDRPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp SSSSCHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 0012244555556655543 3456777777777776643221 1124555555544332221 455555677777
Q ss_pred hhhhhhHHHHHHHHHhhcC-CCCCCCCcchHHHHHHHH------HhhCchhhhhhhhhhhcccc----------CC----
Q 001247 216 CAGKLEAGIKQFLVSSMSG-DSRPGHSHIDYHEVIYDV------YRCSPQILSGVVPYLTGELL----------TD---- 274 (1115)
Q Consensus 216 ~~~~l~~~i~~~~~~~l~~-~~~~~~~~~~~h~li~el------~~~~P~lL~~Vip~Le~eL~----------se---- 274 (1115)
+.+.+.+++.+.+.-++.. .+....-...+-+.+..+ ++..+..+..++|.+-..+. .|
T Consensus 246 ~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed 325 (852)
T 4fdd_A 246 RMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG 325 (852)
T ss_dssp CHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc
Confidence 8888888877665543321 111111111223333333 23334455566666644431 21
Q ss_pred --------chHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCC--CCChHHHH
Q 001247 275 --------QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--RADAPQIL 344 (1115)
Q Consensus 275 --------~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~--~~~~~~l~ 344 (1115)
+-.+|..|...+|.+....+. ...|.+...+.....|.++.+|.+.+.+.+.|....+. .....+++
T Consensus 326 ~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l 402 (852)
T 4fdd_A 326 SGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELI 402 (852)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 124699999999998865442 23356666666667889999999999999987653321 11246789
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCc
Q 001247 345 TALCDRLLDFDENVRKQVVAVICDVACHA----LNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 420 (1115)
Q Consensus 345 ~~l~~rL~D~DekVR~aaV~~i~~la~~~----l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~ 420 (1115)
+.+...+.|++..||.+|+.+++.++... ....-..++..+.+.+.|.++.||..|...|+.+-......
T Consensus 403 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~------ 476 (852)
T 4fdd_A 403 PHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE------ 476 (852)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh------
Confidence 99999999999999999999999988632 22233467888999999999999999999999987654211
Q ss_pred chhhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001247 421 NQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRY 500 (1115)
Q Consensus 421 ~~~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~~~~~~~~~ 500 (1115)
...-+..|=..++.+.-.. . .+....++...+.+-+..-.. +.....+...+..+
T Consensus 477 l~~~l~~ll~~L~~~l~~~--------------------~-~~~~~~~~~ai~~l~~~~~~~----~~~~~~~~~l~p~l 531 (852)
T 4fdd_A 477 LVPYLAYILDTLVFAFSKY--------------------Q-HKNLLILYDAIGTLADSVGHH----LNKPEYIQMLMPPL 531 (852)
T ss_dssp GGGGHHHHHHHHHHHHHHC--------------------C-HHHHHHHHHHHHHHHHHHGGG----GCCHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHh--------------------C-hHHHHHHHHHHHHHHHHhhhh----hccHHHHHHHHHHH
Confidence 1111222222222222100 0 011111111111111000000 00112233444444
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhhHHHHHHHHHHhc--------c------CCCHH
Q 001247 501 LSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLD--------S------NTSFD 566 (1115)
Q Consensus 501 l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r~~~llk~~~~--------~------~s~~~ 566 (1115)
++.+....+.+ ++.. .+-.++..++..+.+.. ...+..+. +++.++++.++. + +.++.
T Consensus 532 ~~~~~~l~d~~-~~~~-~~~~~l~~i~~~~g~~~--~~~~~~i~----~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~ 603 (852)
T 4fdd_A 532 IQKWNMLKDED-KDLF-PLLECLSSVATALQSGF--LPYCEPVY----QRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFM 603 (852)
T ss_dssp HHHHHHSCTTC-TTHH-HHHHHHHHHHHHHGGGG--HHHHHHHH----HHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHH
T ss_pred HHHHHhccccc-HHHH-HHHHHHHHHHHHHhHhH--HHHHHHHH----HHHHHHHHHHHHHHHHhhcCCcccCCCcchHH
Confidence 44443333322 2332 34444555555443321 11222222 224444444321 1 11111
Q ss_pred -HHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhCCcCccc
Q 001247 567 -QAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGG 645 (1115)
Q Consensus 567 -~~~~a~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~ 645 (1115)
.+-.....+.+.+|+. ..+.+.+..-++.+++.+ .+.+......+..+|..++..+|.-|..
T Consensus 604 ~~~l~~l~~l~~~l~~~-------------~~~~~~~~~~~~~l~~~l----~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 666 (852)
T 4fdd_A 604 IVALDLLSGLAEGLGGN-------------IEQLVARSNILTLMYQCM----QDKMPEVRQSSFALLGDLTKACFQHVKP 666 (852)
T ss_dssp HHHHHHHHHHHHHHGGG-------------GHHHHHTCCHHHHHHHHT----TCSSHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred HHHHHHHHHHHHHHhHh-------------HHHHhcCCcHHHHHHHHh----CCCChhHHHHHHHHHHHHHHHhhHHHHH
Confidence 1122333444444422 111111223455555432 2222335567889999999999999999
Q ss_pred cHHHHHHHHhh----ccccchHhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcC-Ch-HHHHHHHHHHHhhcCCCcc
Q 001247 646 TEEELVNLLKE----ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEG-SR-RQAKYAVHALAAITKDDGL 719 (1115)
Q Consensus 646 ~~~~L~~~l~~----~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la~~G-tp-~~AK~Av~~L~~~~~~~~~ 719 (1115)
++..++..+.. +++.+...++.++..++..+.+.+.+.-..+.+.|-+.-... .+ ..-.-|+.+|+.+......
T Consensus 667 ~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~ 746 (852)
T 4fdd_A 667 CIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQ 746 (852)
T ss_dssp GHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHH
Confidence 98888766654 223344556666665554443334433345666665544432 22 4445566777666543211
Q ss_pred ---chHHHHHHHHHHhhhhc-C--CCchHHHHHHHHHhhccccccc
Q 001247 720 ---KSLSVLYKRLVDMLEEK-T--HLPAVLQSLGCIAQTAMPVFET 759 (1115)
Q Consensus 720 ---~~~~~l~~~l~~~l~~~-~--~~~~~L~sLa~ia~~~p~~f~~ 759 (1115)
..++.++...+..|... + .-.+....|..+.+..|.....
T Consensus 747 ~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~ 792 (852)
T 4fdd_A 747 EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQ 792 (852)
T ss_dssp HHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred HhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHH
Confidence 12455666666666422 1 2334556677777777765444
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.99 E-value=7.8e-06 Score=104.29 Aligned_cols=640 Identities=13% Similarity=0.085 Sum_probs=308.3
Q ss_pred HHHHHhhcCCChhcHHHHHHHHHHHHhcc-cccccHHHHHHHHHhhcCCCc---hHHHHHHHHHHHHhhhhhhH-----H
Q 001247 153 STFFAVASDDHPESVLSSMQTIMIVLLEE-SEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEA-----G 223 (1115)
Q Consensus 153 ~~~~~~v~~~~~~~v~~~m~~Il~~vI~e-~~~i~~~~ld~il~~~~~~~~---~~a~~la~~v~~~~~~~l~~-----~ 223 (1115)
+.++.... +.+..|......++..+... ...-.++++..++..+..... ..|...-..+|+...+.+.+ .
T Consensus 93 ~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~ 171 (852)
T 4fdd_A 93 SECLNNIG-DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRP 171 (852)
T ss_dssp HHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSC
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcch
Confidence 33334443 33456777778887777654 334567888888887754332 15555556777777665432 1
Q ss_pred HHHHHHHhhcCCCCCCCCcc--hHHHHHHHHHhhCchh----hhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCCh
Q 001247 224 IKQFLVSSMSGDSRPGHSHI--DYHEVIYDVYRCSPQI----LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 297 (1115)
Q Consensus 224 i~~~~~~~l~~~~~~~~~~~--~~h~li~el~~~~P~l----L~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~ 297 (1115)
+...+..++..=. ..+... .+...+..+....|+. +..++|.|-.-+..+++.+|..|.+.++++....+..+
T Consensus 172 ~~~il~~l~~~l~-~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 172 LNIMIPKFLQFFK-HSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHHHHTTTTT-CSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 2223322222100 011111 1223333222222322 22455555555677899999999999999987644222
Q ss_pred hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCC----CCCChHHHHHHHHHHc-----------CC---------
Q 001247 298 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP----SRADAPQILTALCDRL-----------LD--------- 353 (1115)
Q Consensus 298 ~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~----~~~~~~~l~~~l~~rL-----------~D--------- 353 (1115)
...-+.++..+++...|.++.||...+++...+..... -......+++.+...+ .|
T Consensus 251 ~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd 330 (852)
T 4fdd_A 251 LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDD 330 (852)
T ss_dssp GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccc
Confidence 23336788888888999999999999998777542110 0112457777777776 35
Q ss_pred --chhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHH
Q 001247 354 --FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGK 431 (1115)
Q Consensus 354 --~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~ 431 (1115)
.+..||.++..++..++......+-..++..+.+.+.|.++.+|..|+..||.+-....... ...+..+=..
T Consensus 331 ~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~------~~~l~~~l~~ 404 (852)
T 4fdd_A 331 TISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM------IPYLPELIPH 404 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH------GGGHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH------HHHHHHHHHH
Confidence 34478999999999998765555555678888899999999999999999998754321110 0112222223
Q ss_pred HhhhhhccCCCch-hHHHHh---hhcCCC--CCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHHH-----HHHHHHH
Q 001247 432 ILRCLYDKDFGSD-TIESVL---CGSLFP--TGFSVKDRVRHWVRIFSGFDRI----EMKALEKILEQ-----KQRLQQE 496 (1115)
Q Consensus 432 il~~~y~~d~~~~-~ve~vl---~e~LlP--~~~~~~~R~~~ll~l~~~lD~~----~~ka~~~il~~-----k~~~~~~ 496 (1115)
++.+..+++.+.. ..-.++ .+.+-+ ...--..=+..++.....-++. +..++..+... ...+...
T Consensus 405 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~l 484 (852)
T 4fdd_A 405 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYI 484 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHH
Confidence 3333322221100 000000 000000 0000001122222222211111 11111111110 0012222
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 001247 497 MQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLL 576 (1115)
Q Consensus 497 ~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r~~~llk~~~~~~s~~~~~~~a~~ell 576 (1115)
+..++.+...+ + .+....+..++..++...++.....+.+..+. +-+.+.+..+.+.+.+...+-.+...+.
T Consensus 485 l~~L~~~l~~~---~-~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~----p~l~~~~~~l~d~~~~~~~~~~~l~~i~ 556 (852)
T 4fdd_A 485 LDTLVFAFSKY---Q-HKNLLILYDAIGTLADSVGHHLNKPEYIQMLM----PPLIQKWNMLKDEDKDLFPLLECLSSVA 556 (852)
T ss_dssp HHHHHHHHHHC---C-HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHH----HHHHHHHHHSCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---C-hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHH----HHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 33333332221 1 11111122233333332222221111222221 1122222333344434433444455555
Q ss_pred HHhcCCCchHHHHHHHHHhhhccccchhHHHHHHHHHHh-hcccchhhhhHHHHHHHHHHHhhCCcCccccH------HH
Q 001247 577 KILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAA-QKSSANAQFMQSCMDILGILARFSPLLLGGTE------EE 649 (1115)
Q Consensus 577 kkl~~~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~-~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~------~~ 649 (1115)
+.+|.. +..++..++.++..++-+. -.......... ..+.........+.+++..|++...+-|..++ .-
T Consensus 557 ~~~g~~--~~~~~~~i~~~~~~~l~~~-l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~ 633 (852)
T 4fdd_A 557 TALQSG--FLPYCEPVYQRCVNLVQKT-LAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTL 633 (852)
T ss_dssp HHHGGG--GHHHHHHHHHHHHHHHHHH-HHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHH
T ss_pred HHHhHh--HHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHH
Confidence 555542 2223333322211110000 00000000000 00011122345667888888877766666442 34
Q ss_pred HHHHHhhccccchHhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcC---CCccchHHHHH
Q 001247 650 LVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITK---DDGLKSLSVLY 726 (1115)
Q Consensus 650 L~~~l~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la~~Gtp~~AK~Av~~L~~~~~---~~~~~~~~~l~ 726 (1115)
+.+.+.+.++.+...+..++..+.+.+...+.+.-..+.+.+.+.-..+.+..-+-|+.+++.+.. .+-......++
T Consensus 634 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il 713 (852)
T 4fdd_A 634 MYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL 713 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHH
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 444454444556667777777665544444333222355555554445566666666666654432 21122345567
Q ss_pred HHHHHhhhhcCCC-----chHHHHHHHHHhhcccccccchHHHHHHHHHhhhcccccccCCCCCCCCCChhhHHHHHHHH
Q 001247 727 KRLVDMLEEKTHL-----PAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGI 801 (1115)
Q Consensus 727 ~~l~~~l~~~~~~-----~~~L~sLa~ia~~~p~~f~~~~~~I~~fiik~iL~~~~~~~~~~~~~W~~~~~~~~~K~~aL 801 (1115)
..+..-++.. +. .+...++|.++...|..+..+.+.+..-..+.+ .... +. ..|..|.
T Consensus 714 ~~L~~~l~~~-~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l-~~~~------------d~---~e~~~a~ 776 (852)
T 4fdd_A 714 HQLVEIINRP-NTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSL-RNIR------------DN---EEKDSAF 776 (852)
T ss_dssp HHHHHHHTCS-SCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHH-HTSC------------SS---HHHHHHH
T ss_pred HHHHHHhCCC-CCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHh-cccc------------cc---HHHHHHH
Confidence 7777766532 22 224467888888888877776666655444422 2111 11 1267788
Q ss_pred HHHHHhhcCCCccccccchHHHHHHHHHhhc
Q 001247 802 KTLVKSYLPVKDAHIRPGIDDLLGILKSMLS 832 (1115)
Q Consensus 802 K~lvn~l~~~~~~~~~~~~~~l~~lL~~i~~ 832 (1115)
+.|.+.+....+. ....+..++..+.+
T Consensus 777 ~~l~~li~~~p~~----~~~~~~~~~~~~~~ 803 (852)
T 4fdd_A 777 RGICTMISVNPSG----VIQDFIFFCDAVAS 803 (852)
T ss_dssp HHHHHHHHHCGGG----TGGGHHHHHHHHHT
T ss_pred HHHHHHHHhChHh----HHHHHHHHHHHHHh
Confidence 8888777654431 23344555555554
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.99 E-value=8.1e-06 Score=103.48 Aligned_cols=630 Identities=12% Similarity=0.112 Sum_probs=318.0
Q ss_pred hhcHHHHHHHHHHHHhccc-c-cccHHHHHHHHHhhcCCCch----HHHHHHHHHHHHhhhh---hhHHHHHH---HHHh
Q 001247 164 PESVLSSMQTIMIVLLEES-E-DIQEDLLVILLSALGRNKND----TARRLAMNVIEQCAGK---LEAGIKQF---LVSS 231 (1115)
Q Consensus 164 ~~~v~~~m~~Il~~vI~e~-~-~i~~~~ld~il~~~~~~~~~----~a~~la~~v~~~~~~~---l~~~i~~~---~~~~ 231 (1115)
+..+......++..+.... . .-.++++..++..+..++.. .|..+...+|...... +.+++... +...
T Consensus 108 ~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~ 187 (861)
T 2bpt_A 108 EPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQG 187 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHh
Confidence 3556666677766665442 2 24577888888777544222 3444444555543322 23333333 3333
Q ss_pred hcCCCCCCCCcchHHHHHHHHHhhCchhh------hhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcH-HH
Q 001247 232 MSGDSRPGHSHIDYHEVIYDVYRCSPQIL------SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFH-SV 304 (1115)
Q Consensus 232 l~~~~~~~~~~~~~h~li~el~~~~P~lL------~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~-~~ 304 (1115)
+........-...+-+.+..+-.+..+-+ ..+++.|..-+.+++..+|..|.+.++++....+..+....+ .+
T Consensus 188 l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l 267 (861)
T 2bpt_A 188 AQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL 267 (861)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTH
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221010111122333333222222111 124555556677899999999999999999765444444445 89
Q ss_pred HHHHHhcccCCChhHHHHHHHHhHHHHhcC-------------CC--CC----ChHHHHHHHHHHcCCch-------hHH
Q 001247 305 FSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-------------PS--RA----DAPQILTALCDRLLDFD-------ENV 358 (1115)
Q Consensus 305 ~~~fL~R~~D~s~~VR~~~v~~~~~il~~~-------------~~--~~----~~~~l~~~l~~rL~D~D-------ekV 358 (1115)
|..++....|.++.||...+++...+.... |. .. ....+++.+...+.+.| ..|
T Consensus 268 ~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~ 347 (861)
T 2bpt_A 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNV 347 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcH
Confidence 999999999999999999999887766531 10 00 12467778877887543 489
Q ss_pred HHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhhhc
Q 001247 359 RKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYD 438 (1115)
Q Consensus 359 R~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~il~~~y~ 438 (1115)
|.++..++..++......+-..++..+.+.+.|..+.+|+.|+..+|.+-.....+ .....+..|=..+++..
T Consensus 348 r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~-----~~~~~l~~il~~l~~~l-- 420 (861)
T 2bpt_A 348 SMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKV-----QRTYYVHQALPSILNLM-- 420 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH-----HHHHHHHHHHHHHHHGG--
T ss_pred HHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHHHHc--
Confidence 99999999998875545554567788888889999999999999988764211000 00011111111111111
Q ss_pred cCCCchhHHHHhhhcCCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHH
Q 001247 439 KDFGSDTIESVLCGSLFPTGFSVKDRVRH---WVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEI 515 (1115)
Q Consensus 439 ~d~~~~~ve~vl~e~LlP~~~~~~~R~~~---ll~l~~~lD~~~~ka~~~il~~k~~~~~~~~~~l~~~~~~~~~~~~~~ 515 (1115)
+| .++.-|... +-.+...+.+. + .....+...+..++... + +++.+
T Consensus 421 ~d------------------~~~~vr~~a~~~l~~l~~~~~~~----~----~~~~~~~~~l~~l~~~l---~--~~~~v 469 (861)
T 2bpt_A 421 ND------------------QSLQVKETTAWCIGRIADSVAES----I----DPQQHLPGVVQACLIGL---Q--DHPKV 469 (861)
T ss_dssp GC------------------SCHHHHHHHHHHHHHHHHHHGGG----S----CTTTTHHHHHHHHHHHH---T--SCHHH
T ss_pred CC------------------CcHHHHHHHHHHHHHHHHHhhhh----c----CCHHHHHHHHHHHHHHh---c--cChHH
Confidence 11 122222111 00111110000 0 00011222223333222 1 11444
Q ss_pred HHHHHHHHHHHhhhcCC--chhHHHHHHHHHhhhhHHHHHHHHHHhc-cCC--CHH-HHHHHHHHHHHHhcCCCchHHHH
Q 001247 516 QKKILFCFRVMSRSFAE--PAKAEENFLILDQLKDANVWKILMNLLD-SNT--SFD-QAFTGRDDLLKILGAKHRLYDFL 589 (1115)
Q Consensus 516 ~~kl~~~i~~Ls~~fpd--~~ka~~~l~kf~~l~D~r~~~llk~~~~-~~s--~~~-~~~~a~~ellkkl~~~~~~~~~~ 589 (1115)
.......+..++..+++ +......+ +.+...|-.+++ ++. +.+ .+..+...+.+..+.. ...++
T Consensus 470 ~~~a~~al~~l~~~~~~~~~~~l~~~~--------~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~--~~~~~ 539 (861)
T 2bpt_A 470 ATNCSWTIINLVEQLAEATPSPIYNFY--------PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT--VAETS 539 (861)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCGGGGGH--------HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG--GHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHH--------HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh--hHHHH
Confidence 44433444444444432 11110111 112222222222 221 111 1233334444443322 11122
Q ss_pred HHHHHhhhccccchhHHHHHHHHHHhhc-------c----cchhhhhHHHHHHHHHHHhhCCcCccccHHHHHHH----H
Q 001247 590 STLSMKCSYLLFNKEHVKEILLEVAAQK-------S----SANAQFMQSCMDILGILARFSPLLLGGTEEELVNL----L 654 (1115)
Q Consensus 590 ~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~-------~----~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~~~----l 654 (1115)
. .-++.+++.+.... . +........+.+.|..+....+.-+..+.+.++.. +
T Consensus 540 ~-------------~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 606 (861)
T 2bpt_A 540 A-------------SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLL 606 (861)
T ss_dssp H-------------HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHH
T ss_pred H-------------HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 1 12233333332210 0 01111224566778888888887777776555544 4
Q ss_pred hhccc-cchHhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc---chHHHHHHHHH
Q 001247 655 KEENE-IIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL---KSLSVLYKRLV 730 (1115)
Q Consensus 655 ~~~~~-~~~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la~~Gtp~~AK~Av~~L~~~~~~~~~---~~~~~l~~~l~ 730 (1115)
...+. .+.+.++..+..+.....+.+.+.-..+.+.|.+.....++..-..|+.++..+...-+. .....++..+.
T Consensus 607 ~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~ 686 (861)
T 2bpt_A 607 EKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLA 686 (861)
T ss_dssp HSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHH
Confidence 44433 456677777765554433333222224566666655555566666677777655433222 12344555555
Q ss_pred HhhhhcC----CCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhcccccccCCCCCCCCCChhhHHHHHHHHHHHHH
Q 001247 731 DMLEEKT----HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVK 806 (1115)
Q Consensus 731 ~~l~~~~----~~~~~L~sLa~ia~~~p~~f~~~~~~I~~fiik~iL~~~~~~~~~~~~~W~~~~~~~~~K~~aLK~lvn 806 (1115)
..+...+ --...+.++|.|++..+..|....+.+...+++.+-..+ +. +++++.+ .....+..+++++..
T Consensus 687 ~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~---~~-~d~d~~~--~~~~vr~~~l~~~~~ 760 (861)
T 2bpt_A 687 QMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP---EN-GTLEALD--YQIKVLEAVLDAYVG 760 (861)
T ss_dssp HHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC---SS-SSHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC---CC-CChHHHH--HHHHHHHHHHHHHHH
Confidence 6664321 234577888999998888787766677766665432111 11 1111110 112235567777666
Q ss_pred hhcCCCc--cccccchHHHHHHHHHhhccCccccCCCCChhHHhhhhHHHHHHHHHhhhhc-CCC
Q 001247 807 SYLPVKD--AHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW-DHK 868 (1115)
Q Consensus 807 ~l~~~~~--~~~~~~~~~l~~lL~~i~~~Gel~~~~~t~~~~~srLRL~Aa~~lLKLa~~~-~~~ 868 (1115)
.+.+..+ +...+.+..++.+|...+.+++ ..+...+|-+|...+=.|++.+ ...
T Consensus 761 i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~--------~~~~~~vr~~a~~~l~~l~~~~~g~~ 817 (861)
T 2bpt_A 761 IVAGLHDKPEALFPYVGTIFQFIAQVAEDPQ--------LYSEDATSRAAVGLIGDIAAMFPDGS 817 (861)
T ss_dssp HHHHTTTCHHHHGGGHHHHHHHHHHHHHCHH--------HHTSHHHHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHcCcc--------cCCcHHHHHHHHHHHHHHHHHcCCch
Confidence 6554442 3355566777777655432100 0014579999999999999876 443
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.95 E-value=7.9e-07 Score=107.48 Aligned_cols=324 Identities=14% Similarity=0.145 Sum_probs=196.5
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCC
Q 001247 64 LLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE 143 (1115)
Q Consensus 64 lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~ 143 (1115)
.|+|.|.++|..++-+|..+.+..-|+ ....++..++.... |+ ++ .-+..+.+.+...-.. +.
T Consensus 18 ~l~s~~~~~R~~A~~~l~~i~~~~~~~-----~~~~~l~~~L~~~~----d~-~~--~vr~~~~~~L~~~~~~-----~~ 80 (588)
T 1b3u_A 18 ELRNEDVQLRLNSIKKLSTIALALGVE-----RTRSELLPFLTDTI----YD-ED--EVLLALAEQLGTFTTL-----VG 80 (588)
T ss_dssp HTTCSCHHHHHHHHHTHHHHHHHSCHH-----HHHHTHHHHHHHTC----CC-CH--HHHHHHHHHHTTCSGG-----GT
T ss_pred HhhcccHHHHHHHHHhHHHHHHHhCHH-----HHHHHHHHHHHHhc----CC-cH--HHHHHHHHHHHHHHhc-----cC
Confidence 367899999999999999998755442 33455666665432 32 22 2334444444432111 11
Q ss_pred chHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhccccc--ccHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhh-
Q 001247 144 CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED--IQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKL- 220 (1115)
Q Consensus 144 ~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~--i~~~~ld~il~~~~~~~~~~a~~la~~v~~~~~~~l- 220 (1115)
..+....++..+....+ +....|.......|..+.+.... +...++ .++..+........+..|..++......+
T Consensus 81 ~~~~~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~-~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 81 GPEYVHCLLPPLESLAT-VEETVVRDKAVESLRAISHEHSPSDLEAHFV-PLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp SGGGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTSCHHHHHHTHH-HHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred cHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 12222233333333332 33467888888888888765421 111122 22233333333344555555555554443
Q ss_pred ---hHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCch--hhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCC
Q 001247 221 ---EAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQ--ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS 295 (1115)
Q Consensus 221 ---~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~--lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~ 295 (1115)
.+.+..++...+.+++ ..-...+-+.+.++.+..+. ....++|.+..-+..++..+|..|.+.+|.+...-+.
T Consensus 159 ~~~~~~l~~~l~~l~~d~~--~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 236 (588)
T 1b3u_A 159 SAVKAELRQYFRNLCSDDT--PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236 (588)
T ss_dssp HHHHHHHHHHHHHHHTCSC--HHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH
Confidence 3444444444443221 11112345566666666553 3456888888888889999999999999988764331
Q ss_pred ChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC
Q 001247 296 ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1115)
Q Consensus 296 ~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~ 375 (1115)
. ...+.+...+..-..|.+..||...++..+.+....+......++++.+...+.|+++.||.+++.+++.++.....
T Consensus 237 ~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 314 (588)
T 1b3u_A 237 E--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp H--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred H--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh
Confidence 1 11233334444455799999999999999887754321111246788999999999999999999999988764332
Q ss_pred C-----CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 376 S-----IPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 376 ~-----v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
. .-..++..+...+.|+++.||..|...|+.+-..
T Consensus 315 ~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~ 354 (588)
T 1b3u_A 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI 354 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHH
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 2 1234667778889999999999999988887654
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.94 E-value=5e-05 Score=96.23 Aligned_cols=336 Identities=13% Similarity=0.068 Sum_probs=201.7
Q ss_pred HHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhh
Q 001247 54 PFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKY 133 (1115)
Q Consensus 54 ~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~v 133 (1115)
.+...|++ .|.+.+..||--+|-||+.|.+..-|...| .+++..++..+. ++.++ ..+...+..+..+
T Consensus 95 ~ik~~ll~--~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w-----~~ll~~L~~~l~---~~~~~--~~r~~al~~l~~l 162 (861)
T 2bpt_A 95 QIKTNALT--ALVSIEPRIANAAAQLIAAIADIELPHGAW-----PELMKIMVDNTG---AEQPE--NVKRASLLALGYM 162 (861)
T ss_dssp HHHHHHHH--HHTCSSHHHHHHHHHHHHHHHHHHGGGTCC-----HHHHHHHHHHTS---TTSCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHCCCchHHHHHHHHHHHHHHHhhCccccc-----HHHHHHHHHHHh---cCCCH--HHHHHHHHHHHHH
Confidence 34444444 467888999999999999999987664333 455666666553 22122 2222233333322
Q ss_pred hhhhhhccCC-----chHHHHHHHHHHHHhhcCC-ChhcHHHHHHHHHHHHhccccc-c-----cHHHHHHHHHhhcCCC
Q 001247 134 RSCVVMLDLE-----CDELVNEMYSTFFAVASDD-HPESVLSSMQTIMIVLLEESED-I-----QEDLLVILLSALGRNK 201 (1115)
Q Consensus 134 ks~vl~~dl~-----~~~li~~lF~~~~~~v~~~-~~~~v~~~m~~Il~~vI~e~~~-i-----~~~~ld~il~~~~~~~ 201 (1115)
- -+++ -+..+..++..+.....+. ....|.......+..+++-.+. . ...++..+...+....
T Consensus 163 ~-----~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 237 (861)
T 2bpt_A 163 C-----ESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED 237 (861)
T ss_dssp H-----HTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSC
T ss_pred H-----HcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCC
Confidence 1 1111 1345566666666666544 2567888888888877543221 1 1234555544332221
Q ss_pred c---hHHHHHHHHHHHHhhhhhhHHHH-HHHHHhhcC-CCCCCCCcchHHHHHHHHHhh-----------------Cch-
Q 001247 202 N---DTARRLAMNVIEQCAGKLEAGIK-QFLVSSMSG-DSRPGHSHIDYHEVIYDVYRC-----------------SPQ- 258 (1115)
Q Consensus 202 ~---~~a~~la~~v~~~~~~~l~~~i~-~~~~~~l~~-~~~~~~~~~~~h~li~el~~~-----------------~P~- 258 (1115)
. ..+...-..++..+.+.+.+++. .++.-++.. .+........+.+.+..+.+. +|.
T Consensus 238 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (861)
T 2bpt_A 238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF 317 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHH
Confidence 1 15566666777777787888776 554432211 111111111233333333222 121
Q ss_pred ---hhhhhhhhhhccccC-------CchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhH
Q 001247 259 ---ILSGVVPYLTGELLT-------DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVK 328 (1115)
Q Consensus 259 ---lL~~Vip~Le~eL~s-------e~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~ 328 (1115)
.+..++|.+-..|.. ++..+|..|..+++.+...-+. ...+.+.........|.+..+|.+.+...+
T Consensus 318 ~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~ 394 (861)
T 2bpt_A 318 ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVEQNITADNWRNREAAVMAFG 394 (861)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH---hHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Confidence 234566666544543 3357999999999988765332 223556666666667889999999999998
Q ss_pred HHHhcCC-C--CCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC-----CCHHHHHHHHHhhccCChhHHHHH
Q 001247 329 SCLLTDP-S--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS-----IPVETVKLVAERLRDKSVLVKRYT 400 (1115)
Q Consensus 329 ~il~~~~-~--~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~-----v~~~~l~~l~eR~rDKk~~VR~~A 400 (1115)
.+..... . ......+++.+...+.|+++.||.+++.+++.++...... .-..++..+...+.|. +.||..|
T Consensus 395 ~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a 473 (861)
T 2bpt_A 395 SIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNC 473 (861)
T ss_dssp HTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHH
Confidence 8664221 1 0112467788889999999999999999999887643222 2335677778888887 9999999
Q ss_pred HHHHHHHHHH
Q 001247 401 MERLADIFRG 410 (1115)
Q Consensus 401 i~~L~~ly~~ 410 (1115)
...|+.+-..
T Consensus 474 ~~al~~l~~~ 483 (861)
T 2bpt_A 474 SWTIINLVEQ 483 (861)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988665
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.93 E-value=2.2e-05 Score=99.77 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=107.1
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcH-HHHHHHHhcccCCChhHHHHHHHHhHHHHhcC-------
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFH-SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD------- 334 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~-~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~------- 334 (1115)
++|.+..-+..++..+|..|.+.++.+....+..+....+ .++...+....|.++.||...+++...+....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~ 297 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA 297 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhh
Confidence 5666666677889999999999999999865433433334 67777777888999999999888777665421
Q ss_pred ------------CCCCC----hHHHHHHHHHHcC-------CchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhcc
Q 001247 335 ------------PSRAD----APQILTALCDRLL-------DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRD 391 (1115)
Q Consensus 335 ------------~~~~~----~~~l~~~l~~rL~-------D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rD 391 (1115)
+.... ..+++..+...+. |.+++||.++..++..++......+-..++..+.+.+.|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~ 377 (876)
T 1qgr_A 298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN 377 (876)
T ss_dssp HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTC
T ss_pred ccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccC
Confidence 11111 1456666666664 456799999999999888755444444677788888999
Q ss_pred CChhHHHHHHHHHHHHH
Q 001247 392 KSVLVKRYTMERLADIF 408 (1115)
Q Consensus 392 Kk~~VR~~Ai~~L~~ly 408 (1115)
..+.||..|+..+|.+-
T Consensus 378 ~~~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 378 PDWRYRDAAVMAFGCIL 394 (876)
T ss_dssp SSHHHHHHHHHHHHHTS
T ss_pred CChHHHHHHHHHHHHHH
Confidence 99999999999998764
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.86 E-value=2.4e-05 Score=103.88 Aligned_cols=338 Identities=15% Similarity=0.173 Sum_probs=200.3
Q ss_pred HHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHH
Q 001247 52 MQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLA 131 (1115)
Q Consensus 52 l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la 131 (1115)
...+...|.+ .|.+++..||..++-||..+..-+ |+ .++..|+..++..+ .|++.. . +......++
T Consensus 46 ~~~il~~Ll~--~L~d~~~~vR~~A~~~L~~l~~~~-~~-----~~~~~i~~~Ll~~l---~d~~~~--v-R~~a~~~L~ 111 (1230)
T 1u6g_C 46 ERKVVKMILK--LLEDKNGEVQNLAVKCLGPLVSKV-KE-----YQVETIVDTLCTNM---LSDKEQ--L-RDISSIGLK 111 (1230)
T ss_dssp HHHHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTTS-CH-----HHHHHHHHHHHHHT---TCSSSH--H-HHHHHHHHH
T ss_pred HHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHhC-CH-----HHHHHHHHHHHHHh---cCCcHH--H-HHHHHHHHH
Confidence 3344444442 356899999999999999999743 22 56777887777764 443332 2 233334444
Q ss_pred hhhhhhhhccCCc--------hHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhccccc-c---cHHHHHHHHHhhcC
Q 001247 132 KYRSCVVMLDLEC--------DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-I---QEDLLVILLSALGR 199 (1115)
Q Consensus 132 ~vks~vl~~dl~~--------~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~-i---~~~~ld~il~~~~~ 199 (1115)
.+- .+++. .....+++..++....++....+......++..+++.... + -++++..++..+..
T Consensus 112 ~i~-----~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~ 186 (1230)
T 1u6g_C 112 TVI-----GELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 186 (1230)
T ss_dssp HHH-----HHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGC
T ss_pred HHH-----HhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcC
Confidence 321 12221 1245555555555555334456777888888888865332 2 24455555555543
Q ss_pred CCchHHHHHHHHHHHHhhhhhh----HHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchh----hhhhhhhhhccc
Q 001247 200 NKNDTARRLAMNVIEQCAGKLE----AGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQI----LSGVVPYLTGEL 271 (1115)
Q Consensus 200 ~~~~~a~~la~~v~~~~~~~l~----~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~l----L~~Vip~Le~eL 271 (1115)
. ...-+.-|...+...+..+. +.+-..+-..+..+.. ......+.+.+..+.+..|.. +..++|.+-..+
T Consensus 187 ~-~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l 264 (1230)
T 1u6g_C 187 P-RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFC 264 (1230)
T ss_dssp S-SHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 2 22233333333333333222 1111122222222111 122334677777777777754 456888888888
Q ss_pred cCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcc-------------------------------------cC
Q 001247 272 LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRL-------------------------------------TD 314 (1115)
Q Consensus 272 ~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~-------------------------------------~D 314 (1115)
..+++.+|..|.+.+|.+...-+..+..--+.+....+... .|
T Consensus 265 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d 344 (1230)
T 1u6g_C 265 NVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDD 344 (1230)
T ss_dssp SSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccc
Confidence 88899999999999999887655443222222222222211 24
Q ss_pred CChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhc------------------
Q 001247 315 RIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL------------------ 374 (1115)
Q Consensus 315 ~s~~VR~~~v~~~~~il~~~~~~--~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l------------------ 374 (1115)
.+..||....+....+..+.+.. ....++++.+..++.|.++.||.+++.++..+....-
T Consensus 345 ~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 424 (1230)
T 1u6g_C 345 MSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETP 424 (1230)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCH
T ss_pred cCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccch
Confidence 55678999999888877654431 1123567788889999999999999999887654221
Q ss_pred ----CCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 375 ----NSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 375 ----~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
...-..++..+...++|+.+.||..|+..|+.+-..
T Consensus 425 ~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 425 LTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 111234556667779999999999999999987765
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.77 E-value=4.2e-05 Score=101.55 Aligned_cols=560 Identities=14% Similarity=0.132 Sum_probs=285.6
Q ss_pred hhhhhhhhhhcccc-CCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC
Q 001247 259 ILSGVVPYLTGELL-TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR 337 (1115)
Q Consensus 259 lL~~Vip~Le~eL~-se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~ 337 (1115)
....++|.|..-+. +++..+|..|...++++...-+..+...++.+...++.-+.|.++.||...+++.+.+....+..
T Consensus 130 ~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~ 209 (1230)
T 1u6g_C 130 VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI 209 (1230)
T ss_dssp HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH
Confidence 46678888888888 68999999999999999975554566666999999999999999999999999999877654432
Q ss_pred CChHHHHHHHHHHcCCch-hHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 001247 338 ADAPQILTALCDRLLDFD-ENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1115)
Q Consensus 338 ~~~~~l~~~l~~rL~D~D-ekVR~aaV~~i~~la~~~l~~v---~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~ 413 (1115)
....+++.+...|.+.+ ..+|..++++++.++......+ -.+++..+..-+.|....||..|+..++.+-+.. +
T Consensus 210 -~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~-~ 287 (1230)
T 1u6g_C 210 -VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRC-P 287 (1230)
T ss_dssp --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT-T
T ss_pred -HHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC-h
Confidence 12345666666655443 5799999999999886433222 2467888888889999999999999999887742 1
Q ss_pred hccCCCcchhhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001247 414 RNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRL 493 (1115)
Q Consensus 414 ~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~~ 493 (1115)
......+..|-..+++.. ..|.+. ..+ +. .....+... . ..++.. ...
T Consensus 288 -----~~~~~~l~~li~~ll~~l-~~d~~~-~~~----~d-----~~~~~~~~~---~--~~~~~~----~~~------- 335 (1230)
T 1u6g_C 288 -----KEVYPHVSTIINICLKYL-TYDPNY-NYD----DE-----DEDENAMDA---D--GGDDDD----QGS------- 335 (1230)
T ss_dssp -----CCCHHHHHHHHHHHTTCC-CCC-----------------------------------------------------
T ss_pred -----HHHHHhHHHHHHHHHHHh-CCCCCC-CCc----cc-----ccccccccc---c--ccccch----hhc-------
Confidence 111112222222233322 001000 000 00 000000000 0 000000 000
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhhHHHHHHHHHHh-ccCCCHH-HHHHH
Q 001247 494 QQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLL-DSNTSFD-QAFTG 571 (1115)
Q Consensus 494 ~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r~~~llk~~~-~~~s~~~-~~~~a 571 (1115)
-..|-+ .+....+++..-..++..++..+|+.. ...+.++. ..+...+ +++...+ .+.++
T Consensus 336 ---~~~~~~-----~~d~~~~vR~~A~~~l~~l~~~~~~~~--~~~~~~l~--------~~l~~~l~d~~~~Vr~~a~~~ 397 (1230)
T 1u6g_C 336 ---DDEYSD-----DDDMSWKVRRAAAKCLDAVVSTRHEML--PEFYKTVS--------PALISRFKEREENVKADVFHA 397 (1230)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHTTCCTTH--HHHHTTTH--------HHHHSTTSCSSSHHHHHHHHH
T ss_pred ---cccccc-----ccccCHHHHHHHHHHHHHHHHhchhHH--HHHHHHHH--------HHHHHHcCCCchHHHHHHHHH
Confidence 000000 001112333333334444555544311 11111111 1111111 2222222 22344
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhCCcCccccHHHHH
Q 001247 572 RDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELV 651 (1115)
Q Consensus 572 ~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~ 651 (1115)
...+++.++...+..+-......+.++.-.=...++.++..+.....+.+......+..+|..+....|..+..|.+.++
T Consensus 398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll 477 (1230)
T 1u6g_C 398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLV 477 (1230)
T ss_dssp HHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHH
T ss_pred HHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHH
Confidence 45555555431000000000000000000001233444443222212222223356788899999999998888876666
Q ss_pred HHHhh----ccc--cchHhHHHHHHHhhcch-HhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc---CC-----
Q 001247 652 NLLKE----ENE--IIKEGILHVLAKAGGTI-REQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT---KD----- 716 (1115)
Q Consensus 652 ~~l~~----~~~--~~~~~~L~~L~~~~~~~-~~~~~~~~~~l~~~L~~la~~Gtp~~AK~Av~~L~~~~---~~----- 716 (1115)
..+.. .++ .+...++..+..+.+.. ++.+.+.-..+.+.|.+.....+++.+-.|+.++..+. +.
T Consensus 478 ~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~ 557 (1230)
T 1u6g_C 478 PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPS 557 (1230)
T ss_dssp HHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccccc
Confidence 55544 332 34455666665543221 11122122245666666555566765555666665443 22
Q ss_pred -Cc-cchHHHHHHHHHHhhhhcC-C---CchHHHHHHHHHhhcccccccchHHHHHHHHHhhhcccccccCCCCCCCCCC
Q 001247 717 -DG-LKSLSVLYKRLVDMLEEKT-H---LPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDR 790 (1115)
Q Consensus 717 -~~-~~~~~~l~~~l~~~l~~~~-~---~~~~L~sLa~ia~~~p~~f~~~~~~I~~fiik~iL~~~~~~~~~~~~~W~~~ 790 (1115)
.. ......++..+...+...+ + -.+.+.+||.++......+..+-..+...+...+ ... +
T Consensus 558 ~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l-~~e----------~--- 623 (1230)
T 1u6g_C 558 SFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERL-KNE----------I--- 623 (1230)
T ss_dssp CCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHT-TSS----------S---
T ss_pred ccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHh-ccc----------h---
Confidence 01 1234566777777663221 1 1234678888888877777665566666554332 110 1
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCccccCCCCChhHHhhhhHHHHHHHHHhhhhcCCCCC
Q 001247 791 SELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIP 870 (1115)
Q Consensus 791 ~~~~~~K~~aLK~lvn~l~~~~~~~~~~~~~~l~~lL~~i~~~Gel~~~~~t~~~~~srLRL~Aa~~lLKLa~~~~~~i~ 870 (1115)
.+..+++++.....+....+..+.+..++..|...+. + ....+|-.|..++-++++.....++
T Consensus 624 -----~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~-----~-------~~~~~r~~a~~al~~l~~~~~~~~~ 686 (1230)
T 1u6g_C 624 -----TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR-----K-------NQRALKLGTLSALDILIKNYSDSLT 686 (1230)
T ss_dssp -----HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTT-----S-------CCHHHHHHHHHHHHHHHHHCCTTCC
T ss_pred -----hHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH-----h-------CCHHHHHHHHHHHHHHHhcccccCC
Confidence 1344566655444332222334445555555544321 1 1235899999999999987655555
Q ss_pred HHHHHHHh----hcccCCchhHHHHHHHHHHHhHh
Q 001247 871 VDVFHLTL----RTPEISFPQAKKLFLSKVHQYVK 901 (1115)
Q Consensus 871 ~~~~~l~~----~~~qD~~~~VR~~Fl~KL~k~L~ 901 (1115)
.+.+.-++ -+..|+..+++..-++-|...+.
T Consensus 687 ~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~ 721 (1230)
T 1u6g_C 687 AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAK 721 (1230)
T ss_dssp HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Confidence 44443222 12346667777766666665553
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.75 E-value=0.00081 Score=85.25 Aligned_cols=338 Identities=14% Similarity=0.134 Sum_probs=203.7
Q ss_pred hhcCC--CcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhcc
Q 001247 64 LLKHQ--DKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLD 141 (1115)
Q Consensus 64 lL~h~--d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~d 141 (1115)
.+.+. |..+|..+.-||..+..-+.|+. -...+..++..+...+. +++ +...-+...++.+..+-.++- -.
T Consensus 136 ~l~~~~~~~~~r~~al~~l~~l~~~~~~~~--~~~~~~~ll~~l~~~l~---~~~-~~~~vr~~a~~~l~~~~~~~~-~~ 208 (876)
T 1qgr_A 136 NVTNPNSTEHMKESTLEAIGYICQDIDPEQ--LQDKSNEILTAIIQGMR---KEE-PSNNVKLAATNALLNSLEFTK-AN 208 (876)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHSCHHH--HGGGHHHHHHHHHHHHS---TTC-SCHHHHHHHHHHHHHHGGGCH-HH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhcCHhh--HHhHHHHHHHHHHHhhc---CCC-CCHHHHHHHHHHHHHHHHHHH-HH
Confidence 34566 88899999999999987654431 12446667777666553 332 344445556666654322210 01
Q ss_pred CCchHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhccccc-----ccHHHHHHHHHhhcCCCch---HHHHHHHHHH
Q 001247 142 LECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-----IQEDLLVILLSALGRNKND---TARRLAMNVI 213 (1115)
Q Consensus 142 l~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~-----i~~~~ld~il~~~~~~~~~---~a~~la~~v~ 213 (1115)
++.+.....+.+.++.... +...++.......+..+++.... ++..++..++..+...... .|..+-..++
T Consensus 209 ~~~~~~~~~il~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 209 FDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (876)
T ss_dssp HTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 1111111123444444443 33356777777777777765432 2335666666554322111 2322333333
Q ss_pred HHh---------------------hhhhhHHHHHHHH---HhhcC-CC---CCCCC-cchHHHHHHHHHhhCc-hhhhhh
Q 001247 214 EQC---------------------AGKLEAGIKQFLV---SSMSG-DS---RPGHS-HIDYHEVIYDVYRCSP-QILSGV 263 (1115)
Q Consensus 214 ~~~---------------------~~~l~~~i~~~~~---~~l~~-~~---~~~~~-~~~~h~li~el~~~~P-~lL~~V 263 (1115)
+.. ...+++++.+.+. ..+.. +. ..... ...+-..+..+-...| .++..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~ 367 (876)
T 1qgr_A 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHV 367 (876)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHH
Confidence 221 0112222333222 22221 11 01111 1123455555555554 466778
Q ss_pred hhhhhccccCCchHHHHHHHHHHHHhhcCCC-CChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCC----CC
Q 001247 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS----RA 338 (1115)
Q Consensus 264 ip~Le~eL~se~~~~R~~At~~lg~m~s~~~-~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~----~~ 338 (1115)
+|.+...|.+.+..+|..|...+|.+..+.+ ..+....+.++...+.-.+|.++.||...+...+.+....+. ..
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 447 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHH
Confidence 9999999999999999999999999987654 224445577888888889999999999999999987765432 23
Q ss_pred ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-----------------cCCCCHHHHHHHHHhhccC---ChhHHH
Q 001247 339 DAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-----------------LNSIPVETVKLVAERLRDK---SVLVKR 398 (1115)
Q Consensus 339 ~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~-----------------l~~v~~~~l~~l~eR~rDK---k~~VR~ 398 (1115)
....+++.+...+.|. .+||.+++.++..++... +...-..++..+...+.+. ...+|.
T Consensus 448 ~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~ 526 (876)
T 1qgr_A 448 YLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS 526 (876)
T ss_dssp THHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHH
Confidence 4568899999999986 999999999999887542 1111235677777777664 468999
Q ss_pred HHHHHHHHHHHH
Q 001247 399 YTMERLADIFRG 410 (1115)
Q Consensus 399 ~Ai~~L~~ly~~ 410 (1115)
.+++.++.+-..
T Consensus 527 ~~~~~l~~l~~~ 538 (876)
T 1qgr_A 527 SAYESLMEIVKN 538 (876)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.75 E-value=5.7e-06 Score=99.86 Aligned_cols=258 Identities=14% Similarity=0.104 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccc--cccHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhh----
Q 001247 146 ELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--DIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGK---- 219 (1115)
Q Consensus 146 ~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~--~i~~~~ld~il~~~~~~~~~~a~~la~~v~~~~~~~---- 219 (1115)
....++...+.+.. +....|...+...+..+.+... .....++..+.. +........+..|.+.+.+....
T Consensus 45 ~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~-l~~~~~~~vR~~a~~~L~~l~~~~~~~ 121 (588)
T 1b3u_A 45 RTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLES-LATVEETVVRDKAVESLRAISHEHSPS 121 (588)
T ss_dssp HHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHH-HTTSSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHHHHHHHCCHH
Confidence 33344444444444 3345677777777776554321 223445544433 32222333444444444443333
Q ss_pred -hhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCc-hhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCCh
Q 001247 220 -LEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSP-QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 297 (1115)
Q Consensus 220 -l~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P-~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~ 297 (1115)
+.+.+..++.....+++ ......+-.++..+....+ .....++|.+..-+..++..+|..|.+.+|.+...-+.+
T Consensus 122 ~~~~~l~~~l~~l~~~~~--~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~- 198 (588)
T 1b3u_A 122 DLEAHFVPLVKRLAGGDW--FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD- 198 (588)
T ss_dssp HHHHTHHHHHHHHHTCSS--HHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH-
T ss_pred HHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH-
Confidence 33344444444433321 1111123445555555544 334567787777777889999999999999988654421
Q ss_pred hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-cCC
Q 001247 298 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNS 376 (1115)
Q Consensus 298 ~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~-l~~ 376 (1115)
...+.+...++.-.+|.++.||...++..+.+....+.......+++.+...+.|++++||.+++++++.++... .+.
T Consensus 199 -~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~ 277 (588)
T 1b3u_A 199 -NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI 277 (588)
T ss_dssp -HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH
T ss_pred -hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc
Confidence 123456666677778999999999999988876654421122457777888889999999999999999887532 111
Q ss_pred CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 377 IPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 377 v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
...+++..+...+.|..+.||..|...|+.+-..
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 2334667778888999999999999999988764
No 11
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.60 E-value=5.5e-05 Score=92.63 Aligned_cols=396 Identities=12% Similarity=0.099 Sum_probs=214.5
Q ss_pred hhhhhccccCCchHHHHHHHH-HHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 001247 264 VPYLTGELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1115)
Q Consensus 264 ip~Le~eL~se~~~~R~~At~-~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~ 342 (1115)
+..|..+|.+.+...|..|.. ++.-|.-+. +...-+++ -++=..+.++.+|...--++..+...+|+ ...-
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~--d~~~~~~~----vi~l~~s~~~~~Krl~yl~l~~~~~~~~e--~~~l 86 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGK--DVSSLFPD----VVNCMQTDNLELKKLVYLYLMNYAKSQPD--MAIM 86 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHTTC--CCGGGHHH----HHHTTSSSCHHHHHHHHHHHHHHHHHSHH--HHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHCCC--ChHHHHHH----HHHHhCCCCHHHHHHHHHHHHHHcccCch--HHHH
Confidence 456778888888888877654 444443333 33333444 44457888999997777777666554443 2234
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcch
Q 001247 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQ 422 (1115)
Q Consensus 343 l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~ 422 (1115)
+++.+.+-|.|+++.||..|+.+++.+. ...+...++..+...+.|+++.||+.|+.+++++|+.. +...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-------p~~~ 156 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-------AQMV 156 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-------CCCH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-------hhhc
Confidence 5789999999999999999999888654 22233445566888889999999999999999999953 1111
Q ss_pred hhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001247 423 NEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVR---HWVRIFSGFDRIEMKALEKILEQKQRLQQEMQR 499 (1115)
Q Consensus 423 ~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~---~ll~l~~~lD~~~~ka~~~il~~k~~~~~~~~~ 499 (1115)
..-+|+| .+..+..++| +.-|.. .+..+... ++.. ++ ..-....+.+
T Consensus 157 ~~~~~~~-~l~~lL~d~d--------------------~~V~~~A~~aL~~i~~~-~~~~--~~------~~l~~~~~~~ 206 (591)
T 2vgl_B 157 EDQGFLD-SLRDLIADSN--------------------PMVVANAVAALSEISES-HPNS--NL------LDLNPQNINK 206 (591)
T ss_dssp HHHHHHH-HHHHTTSCSC--------------------HHHHHHHHHHHHHHTTS-CCSC--CS------CCCHHHHHHH
T ss_pred ccccHHH-HHHHHhCCCC--------------------hhHHHHHHHHHHHHHhh-CCCc--cc------hhccHHHHHH
Confidence 1112332 2233322211 111111 11111111 0000 00 0012333444
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHh
Q 001247 500 YLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKIL 579 (1115)
Q Consensus 500 ~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r~~~llk~~~~~~s~~~~~~~a~~ellkkl 579 (1115)
++..... ..+-.+.++ ++.++..-|.+.. ........+...+
T Consensus 207 Ll~~l~~----~~~~~q~~i---l~~l~~l~~~~~~-------------------------------~~~~~l~~l~~~l 248 (591)
T 2vgl_B 207 LLTALNE----CTEWGQIFI---LDCLSNYNPKDDR-------------------------------EAQSICERVTPRL 248 (591)
T ss_dssp HHHHHHH----CCHHHHHHH---HHHHHTSCCCSHH-------------------------------HHHHHHHHHTTCS
T ss_pred HHHcCCC----CCchHHHHH---HHHHHHhCCCChH-------------------------------HHHHHHHHHHHHH
Confidence 4443321 122333222 3334333333211 1111222222223
Q ss_pred cCCCc--hHHHHHHHHHhh-----hccccc---hhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhCCcCccccHHH
Q 001247 580 GAKHR--LYDFLSTLSMKC-----SYLLFN---KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEE 649 (1115)
Q Consensus 580 ~~~~~--~~~~~~~Ll~R~-----s~~i~n---~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~ 649 (1115)
++.++ .++.++.+.+=. ++-.++ ..-++.|+. +. + .+.+ ..-.|.+-|..+...+|..|..|...
T Consensus 249 ~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~-L~-~-~d~~--vr~~aL~~l~~i~~~~p~~~~~~~~~ 323 (591)
T 2vgl_B 249 SHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT-LL-S-GEPE--VQYVALRNINLIVQKRPEILKQEIKV 323 (591)
T ss_dssp CSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH-HT-T-SCHH--HHHHHHHHHHHHHHHCCSTTTTCTTT
T ss_pred cCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH-Hh-c-CCcc--HHHHHHHHHHHHHHhChHHHHHHHHh
Confidence 33322 345555554422 111111 111233332 21 1 2222 34567888999999999999988765
Q ss_pred HHHHHhhccccchHhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHH
Q 001247 650 LVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRL 729 (1115)
Q Consensus 650 L~~~l~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la~~Gtp~~AK~Av~~L~~~~~~~~~~~~~~l~~~l 729 (1115)
+.... +++..+...++.+|++.+.. ++. ..+...|..+....++.-.+.|++.|+.++..-. ......+..+
T Consensus 324 ~~~~~-~d~~~Ir~~al~~L~~l~~~--~nv----~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~-~~~~~~v~~L 395 (591)
T 2vgl_B 324 FFVKY-NDPIYVKLEKLDIMIRLASQ--ANI----AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE-QSAERCVSTL 395 (591)
T ss_dssp TSCCT-TSCHHHHHHHHHHHHHTCCS--STH----HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHHH
T ss_pred heecc-CChHHHHHHHHHHHHHHCCh--hhH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh-hHHHHHHHHH
Confidence 42111 22245667788888887643 111 2466778888888888888889999987765321 2233455666
Q ss_pred HHhhhhcCC--CchHHHHHHHHHhhcccccc
Q 001247 730 VDMLEEKTH--LPAVLQSLGCIAQTAMPVFE 758 (1115)
Q Consensus 730 ~~~l~~~~~--~~~~L~sLa~ia~~~p~~f~ 758 (1115)
++.+....+ ....+.++..|.+..|...+
T Consensus 396 l~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~ 426 (591)
T 2vgl_B 396 LDLIQTKVNYVVQEAIVVIRDIFRKYPNKYE 426 (591)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHcccchHHHHHHHHHHHHHHHHCcchHH
Confidence 665553321 12245577777777776654
No 12
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.45 E-value=0.00014 Score=88.90 Aligned_cols=124 Identities=15% Similarity=0.073 Sum_probs=96.9
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHH
Q 001247 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1115)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v 324 (1115)
.|--+..+.+..|+++.-+++.+...|.++|+.+|..|.+++|.+-.. ++. +.+......-..|.+|.||.+.+
T Consensus 69 ~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~---~~~---~~l~~~l~~~L~d~~~~VRk~A~ 142 (591)
T 2vgl_B 69 VYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD---KIT---EYLCEPLRKCLKDEDPYVRKTAA 142 (591)
T ss_dssp HHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG---GGH---HHHHHHHHHHSSCSCHHHHHHHH
T ss_pred HHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChH---HHH---HHHHHHHHHHcCCCChHHHHHHH
Confidence 355555666778999888999999999999999999999999987421 222 34445566666799999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhc
Q 001247 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL 374 (1115)
Q Consensus 325 ~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l 374 (1115)
.+...+...+|+.-....+++.+...|.|+|..||.+|+.++++++....
T Consensus 143 ~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 143 VCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 99999888777531112578899999999999999999999998877554
No 13
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.39 E-value=0.0037 Score=76.80 Aligned_cols=513 Identities=10% Similarity=0.027 Sum_probs=265.8
Q ss_pred hhhhhccccCCchHHHHHHHH-HHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 001247 264 VPYLTGELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1115)
Q Consensus 264 ip~Le~eL~se~~~~R~~At~-~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~ 342 (1115)
+-.|..+|++.+...|..++. ++.-|.-+. +..--+++.-+. +.+.+.++|...--++...+..+|+ ...-
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~--d~~~~~~~vik~----~~s~~~~~Krl~Yl~~~~~~~~~~e--~~~l 107 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLGY--PAHFGQLECLKL----IASQKFTDKRIGYLGAMLLLDERQD--VHLL 107 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHTTC--CCGGGHHHHHHH----HHSSSHHHHHHHHHHHHHHCCCCHH--HHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHcCC--CCcchHHHHHHH----HcCCchHHHHHHHHHHHHHhCCCcH--HHHH
Confidence 445556677666666666544 444333333 343344444443 3466667766555555554443331 2335
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcch
Q 001247 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQ 422 (1115)
Q Consensus 343 l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~ 422 (1115)
+++.|.+-|.|+++.||..|+.+++.+.... +...++..+...++|+++.||+.|+.+++++|+.+... .
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~---~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~-------v 177 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGSSE---MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL-------M 177 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG-------G
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH-------H
Confidence 6789999999999999999999999887432 23456778888999999999999999999999974211 1
Q ss_pred hhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001247 423 NEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLS 502 (1115)
Q Consensus 423 ~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~~~~~~~~~l~ 502 (1115)
+ +|+| .+..+..+.| ...+-.. +..+..+. .-++.....+..+ -..+-..+.+.+.
T Consensus 178 ~--~~~~-~l~~lL~D~d--~~V~~~A---------------l~~L~~i~-~~~~~~~~~~~~~---v~~l~~~L~~~~~ 233 (618)
T 1w63_A 178 E--MFLP-ATKNLLNEKN--HGVLHTS---------------VVLLTEMC-ERSPDMLAHFRKL---VPQLVRILKNLIM 233 (618)
T ss_dssp G--GGGG-GTTTSTTCCC--HHHHHHH---------------HHHHHHHC-CSHHHHHHHHHTT---HHHHHHHHHHHHH
T ss_pred H--HHHH-HHHHHhCCCC--HhHHHHH---------------HHHHHHHH-HhChHHHHHHHHH---HHHHHHHHHHHHc
Confidence 1 3333 2223322222 1111111 01111111 1122111111111 0111111111111
Q ss_pred H--Hhh--hcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhhHHHHHHHHHHhccC-----CCHHHHHHHHH
Q 001247 503 L--RQM--HQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSN-----TSFDQAFTGRD 573 (1115)
Q Consensus 503 ~--~~~--~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r~~~llk~~~~~~-----s~~~~~~~a~~ 573 (1115)
- +.+ +.+..++-.+.++-..+..++.. ||... +.++.+|..++.+. .+..-
T Consensus 234 ~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~--~~~~~------------~~~~~~L~~l~~~~~~~~~~~~aV------ 293 (618)
T 1w63_A 234 SGYSPEHDVSGISDPFLQVRILRLLRILGRN--DDDSS------------EAMNDILAQVATNTETSKNVGNAI------ 293 (618)
T ss_dssp SCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT--CHHHH------------HTTHHHHHHHHHTSCCSSTHHHHH------
T ss_pred CCCCccccccCCCCChHHHHHHHHHHHhCCC--CHHHH------------HHHHHHHHHHHhccccccchHHHH------
Confidence 0 000 11123466666665555555432 22111 22333444433221 01111
Q ss_pred HHHHHhcCCCchHHHHHHHHHhhh-ccccchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhCCcCccccHHHHHH
Q 001247 574 DLLKILGAKHRLYDFLSTLSMKCS-YLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVN 652 (1115)
Q Consensus 574 ellkkl~~~~~~~~~~~~Ll~R~s-~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~~ 652 (1115)
.++.++.++.-.+ +-+. ...+..|.+.+. +. +. .....|..-|..+...+|..|..|...+..
T Consensus 294 -----------~~ea~~~i~~l~~~~~l~-~~a~~~L~~~L~-~~-d~--~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~ 357 (618)
T 1w63_A 294 -----------LYETVLTIMDIKSESGLR-VLAINILGRFLL-NN-DK--NIRYVALTSLLKTVQTDHNAVQRHRSTIVD 357 (618)
T ss_dssp -----------HHHHHHHHHHSCCCHHHH-HHHHHHHHHHHT-CS-ST--TTHHHHHHHHHHHHHHHHHHHGGGHHHHHH
T ss_pred -----------HHHHHHHHHhcCCCHHHH-HHHHHHHHHHHh-CC-CC--chHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 2333443332111 0000 013444444332 11 22 234678899999999999999999999999
Q ss_pred HHhhccccchHhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHh
Q 001247 653 LLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDM 732 (1115)
Q Consensus 653 ~l~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~la~~Gtp~~AK~Av~~L~~~~~~~~~~~~~~l~~~l~~~ 732 (1115)
.+.+++..+...++.+|++.+.. .+. ..+...|..+....++.-...+++.|+.++..-. ......+..+.+.
T Consensus 358 ~l~d~d~~Ir~~alelL~~l~~~--~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~-~~~~~~v~~ll~l 430 (618)
T 1w63_A 358 CLKDLDVSIKRRAMELSFALVNG--NNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYA-PSKRWHIDTIMRV 430 (618)
T ss_dssp GGGSSCHHHHHHHHHHHHHHCCS--SST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHH
T ss_pred HccCCChhHHHHHHHHHHHHccc--ccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHH
Confidence 99988888888899999888753 111 2355667777777777777788888877654311 1122345555555
Q ss_pred hhhc-C-CCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhcccccccCCCCCCCCCChhhHHHHHHHHHHHHHhhcC
Q 001247 733 LEEK-T-HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLP 810 (1115)
Q Consensus 733 l~~~-~-~~~~~L~sLa~ia~~~p~~f~~~~~~I~~fiik~iL~~~~~~~~~~~~~W~~~~~~~~~K~~aLK~lvn~l~~ 810 (1115)
+... . -....+.++..+.+..|+..+. ++.-+++-+- .+ +..+.. ++ .++-++..+.-.
T Consensus 431 L~~~~~~v~~~~~~~l~~ii~~~p~l~~~----~v~~L~~~l~-~~-----------~~~~~~--~~-~~~wilGEy~~~ 491 (618)
T 1w63_A 431 LTTAGSYVRDDAVPNLIQLITNSVEMHAY----TVQRLYKAIL-GD-----------YSQQPL--VQ-VAAWCIGEYGDL 491 (618)
T ss_dssp HHHTGGGSCSSHHHHHHHHHHHSCSTHHH----HHHHHHHHHH-HC-----------CSCSHH--HH-HHHHHHHHHHHH
T ss_pred HHhccchhHHHHHHHHHHHHhcChhHHHH----HHHHHHHHHh-cc-----------cccHHH--HH-HHHHHHhhhHHH
Confidence 5422 1 2333567778888777754432 2222222221 11 011111 22 244444444321
Q ss_pred CCc---ccc---ccchHHHHHHHHHhhccCccccCCCCChhHHhhhhHHHHHHHHHhhhhcCCCCCHHHHHHHhhcccCC
Q 001247 811 VKD---AHI---RPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEIS 884 (1115)
Q Consensus 811 ~~~---~~~---~~~~~~l~~lL~~i~~~Gel~~~~~t~~~~~srLRL~Aa~~lLKLa~~~~~~i~~~~~~l~~~~~qD~ 884 (1115)
..+ +.. ...-..++.+|..++..- ..-...|.++-.++.|++...... .+.+..++....+|.
T Consensus 492 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----------~~~~~vr~~~lta~~Kl~~~~~~~-~~~l~~~L~~~~~~~ 560 (618)
T 1w63_A 492 LVSGQCEEEEPIQVTEDEVLDILESVLISN----------MSTSVTRGYALTAIMKLSTRFTCT-VNRIKKVVSIYGSSI 560 (618)
T ss_dssp HTTCCCSSSCCCCCCHHHHHHHHHHHHHST----------TCCHHHHHHHHHHHHHHHTTCSSC-HHHHHHHHHHHTTCS
T ss_pred hcccccccccccCCCHHHHHHHHHHHHhcc----------CCCHHHHHHHHHHHHHHHHhCcch-HHHHHHHHHHhcCCC
Confidence 111 000 011244566666644210 123567889999999999764332 233333333345788
Q ss_pred chhHHHH
Q 001247 885 FPQAKKL 891 (1115)
Q Consensus 885 ~~~VR~~ 891 (1115)
.++||.+
T Consensus 561 d~evrdR 567 (618)
T 1w63_A 561 DVELQQR 567 (618)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 8899987
No 14
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.32 E-value=0.00014 Score=84.71 Aligned_cols=329 Identities=10% Similarity=0.084 Sum_probs=198.9
Q ss_pred CCcchHHHHHHHHHHHHhhcCCC---------CCCCchHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhh
Q 001247 68 QDKDVKLLVATCICEITRITAPE---------APYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVV 138 (1115)
Q Consensus 68 ~d~~Vr~~~acCl~dilRi~APd---------aPy~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl 138 (1115)
.+..||.+.+-.|-..++-+-++ ...++++...|-..++.. |.+++... .+...++..++..-..
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~---l~~~~~~v-~~~~~~i~~ia~~~~~-- 122 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQT---LGTETYRP-SSASQCVAGIACAEIP-- 122 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---TTCCCSSS-CSHHHHHHHHHHHHGG--
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHH---hCCCCchh-hHHHHHHHHHHHHhcc--
Confidence 46789999999988887532100 113344444444445554 45555555 7777777777654211
Q ss_pred hccCCchHHHHHHHHHHHHhhcCCC-hhcHHHHHHHHHHHHhccc-c----cccHHHHHHHHHhhcCCC-chHHHHHHHH
Q 001247 139 MLDLECDELVNEMYSTFFAVASDDH-PESVLSSMQTIMIVLLEES-E----DIQEDLLVILLSALGRNK-NDTARRLAMN 211 (1115)
Q Consensus 139 ~~dl~~~~li~~lF~~~~~~v~~~~-~~~v~~~m~~Il~~vI~e~-~----~i~~~~ld~il~~~~~~~-~~~a~~la~~ 211 (1115)
+-.-.+++..+++.+- ++. ...+......++..+.++. . ..-+.++..++..+.... +..-+.-|.+
T Consensus 123 --~~~w~~ll~~L~~~l~----~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~ 196 (462)
T 1ibr_B 123 --VNQWPELIPQLVANVT----NPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATN 196 (462)
T ss_dssp --GTCCTTHHHHHHHHHH----CTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred --ccccHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 0012467777766542 321 3456666777778777764 1 222455666666565442 3333444444
Q ss_pred HHHHhhhhhh---------HHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhh-----hhhhhhhccccCCchH
Q 001247 212 VIEQCAGKLE---------AGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILS-----GVVPYLTGELLTDQLD 277 (1115)
Q Consensus 212 v~~~~~~~l~---------~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~-----~Vip~Le~eL~se~~~ 277 (1115)
.+..+...++ .++.+.+.+.+.++ .......+.+.+..+....|+.+. .++|.+-.-+..+++.
T Consensus 197 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 274 (462)
T 1ibr_B 197 ALLNSLEFTKANFDKESERHFIMQVVCEATQCP--DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE 274 (462)
T ss_dssp HHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 4444332222 22222222222111 111122367788888877776654 4555555556678999
Q ss_pred HHHHHHHHHHHhhcCC--------------------CCChhhhc-HHHHHHHHhccc-------CCChhHHHHHHHHhHH
Q 001247 278 TRLKAVGLVGDLFAVP--------------------GSANNEQF-HSVFSEFLKRLT-------DRIVAVRMSVLEHVKS 329 (1115)
Q Consensus 278 ~R~~At~~lg~m~s~~--------------------~~~~~~~~-~~~~~~fL~R~~-------D~s~~VR~~~v~~~~~ 329 (1115)
+|..|.+.++.+.... ...+.+.| +.+....+.... |.+..+|.........
T Consensus 275 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~ 354 (462)
T 1ibr_B 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML 354 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHH
Confidence 9999999888775431 11222222 333333333332 3467899999999888
Q ss_pred HHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 001247 330 CLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA----LNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1115)
Q Consensus 330 il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~----l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~ 405 (1115)
+....+. .....+++.+...+.|++++||.+|+.+++.++... +...-.+++..+...+.|.++.||..|...|+
T Consensus 355 l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 433 (462)
T 1ibr_B 355 LATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433 (462)
T ss_dssp HHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 7766553 334578889999999999999999999999988522 22222457888999999999999999999999
Q ss_pred HHHHHh
Q 001247 406 DIFRGC 411 (1115)
Q Consensus 406 ~ly~~~ 411 (1115)
++-...
T Consensus 434 ~~~~~~ 439 (462)
T 1ibr_B 434 RICELL 439 (462)
T ss_dssp HHHHHG
T ss_pred HHHHhc
Confidence 998764
No 15
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.23 E-value=1.6e-05 Score=85.55 Aligned_cols=147 Identities=10% Similarity=0.089 Sum_probs=122.4
Q ss_pred hhhhhhhhcccc-CCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCC
Q 001247 261 SGVVPYLTGELL-TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1115)
Q Consensus 261 ~~Vip~Le~eL~-se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~ 339 (1115)
..+++.|..-|. ..+..+|..|..++|.|...-+..|....+.+....+.++.|+++.||....++...+..+.+
T Consensus 55 ~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---- 130 (242)
T 2qk2_A 55 GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---- 130 (242)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----
Confidence 455666666674 789999999999999999776667777778999999999999999999999999999876433
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-cCCCCH----HHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 340 APQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPV----ETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 340 ~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~-l~~v~~----~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
...+++.+...+.|.+..||..++..+..+.... .+.... .++..+..-+.|+++.||..|+..++.++...
T Consensus 131 ~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 131 LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999865432 332222 46678888899999999999999999999875
No 16
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.14 E-value=0.011 Score=72.58 Aligned_cols=388 Identities=11% Similarity=0.063 Sum_probs=202.3
Q ss_pred HHHHHHHHHhhC-----chhhhhhhhhhhccccCC---chHH-HHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCC
Q 001247 245 YHEVIYDVYRCS-----PQILSGVVPYLTGELLTD---QLDT-RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR 315 (1115)
Q Consensus 245 ~h~li~el~~~~-----P~lL~~Vip~Le~eL~se---~~~~-R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~ 315 (1115)
.+++|..|..+- -..+..-+-.+..+|+++ +... +....+++.-|.-+.+..+ -++ .-++=+...
T Consensus 13 l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~--~~~----~vvkl~~s~ 86 (621)
T 2vgl_A 13 LAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDF--GHM----EAVNLLSSN 86 (621)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCS--CHH----HHHHGGGCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCch--hHH----HHHHHhcCC
Confidence 444555544442 223444455566667643 4444 4445556665554443332 234 444455677
Q ss_pred ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhh--ccCC
Q 001247 316 IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERL--RDKS 393 (1115)
Q Consensus 316 s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~--rDKk 393 (1115)
+..+|...--++..+...+| +..--+++.+.+=|.|+++-||..|+.++|.+.... +-+.++..+...+ .|++
T Consensus 87 ~~~~Krl~YL~l~~~~~~~~--e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e---~~~~l~~~v~~~l~~~d~~ 161 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSNS--ELIRLINNAIKNDLASRNPTFMGLALHCIANVGSRE---MAEAFAGEIPKILVAGDTM 161 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCCH--HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH---HHHHHTTHHHHHHHCSSSC
T ss_pred CHHHHHHHHHHHHHHccCCc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHhCCCCC
Confidence 88888776666665444433 223345789999999999999999999999875432 2234555666777 8999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 001247 394 VLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFS 473 (1115)
Q Consensus 394 ~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~ll~l~~ 473 (1115)
+-||+.|+-++.++|+.+. +. ... +..++.+..+..+.| ...+..++ ..+..+..
T Consensus 162 ~~VRK~A~~al~kl~~~~p-~~------~~~-~~~~~~l~~lL~d~d--~~V~~~a~---------------~~l~~i~~ 216 (621)
T 2vgl_A 162 DSVKQSAALCLLRLYRTSP-DL------VPM-GDWTSRVVHLLNDQH--LGVVTAAT---------------SLITTLAQ 216 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCG-GG------CCC-CSCHHHHHHHTTCSC--HHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCh-hh------cCc-hhHHHHHHHHhCCCC--ccHHHHHH---------------HHHHHHHH
Confidence 9999999999999999642 11 010 133556666553323 11111111 11111111
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhh--cCCCcHHHHHHHHHHHHHHhhhcCC-chhHHHHHHHHHhh
Q 001247 474 GFDRIEMKALEKILEQKQRLQQEMQRYLSLR----QMH--QDGDAPEIQKKILFCFRVMSRSFAE-PAKAEENFLILDQL 546 (1115)
Q Consensus 474 ~lD~~~~ka~~~il~~k~~~~~~~~~~l~~~----~~~--~~~~~~~~~~kl~~~i~~Ls~~fpd-~~ka~~~l~kf~~l 546 (1115)
. ++. .+..+. ..+-..+.+++... +++ .+-..|-.+.++ +++++..-|. .....+
T Consensus 217 ~-~~~---~~~~~~---~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~i---l~ll~~~~~~~d~~~~~-------- 278 (621)
T 2vgl_A 217 K-NPE---EFKTSV---SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKL---LRLLQCYPPPEDPAVRG-------- 278 (621)
T ss_dssp H-CHH---HHTTHH---HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHH---HHHGGGSSSCSSHHHHH--------
T ss_pred h-ChH---HHHHHH---HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHH---HHHHHHhCCCCCHHHHH--------
Confidence 1 121 111110 11111112222110 000 000134555554 5556555442 222211
Q ss_pred hhHHHHHHHHHHh----c-cCCC-HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccchhH----HHHHHHHHHhh
Q 001247 547 KDANVWKILMNLL----D-SNTS-FDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEH----VKEILLEVAAQ 616 (1115)
Q Consensus 547 ~D~r~~~llk~~~----~-~~s~-~~~~~~a~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n~s~----V~~Ll~~~~~~ 616 (1115)
.++..|..++ + |.++ .+. .|+ +.+.+++.++.++.=.+ +.+. +..|...+. +
T Consensus 279 ---~l~~~L~~il~~~~~~~ks~~l~~-~n~---------~~aVl~ea~~~i~~l~~----~~~~~~~~~~~L~~~L~-~ 340 (621)
T 2vgl_A 279 ---RLTECLETILNKAQEPPKSKKVQH-SNA---------KNAVLFEAISLIIHHDS----EPNLLVRACNQLGQFLQ-H 340 (621)
T ss_dssp ---HHHHHHHHHHHHHHSCCSCSSHHH-HHH---------HHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHSS-C
T ss_pred ---HHHHHHHHHHHhhccCcccccccc-cch---------HHHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHhc-C
Confidence 1222222222 1 1111 100 000 00223455555443221 2222 223332221 1
Q ss_pred cccchhhhhHHHHHHHHHHHhhCC--cCccccHHHHHHHHh-hccccchHhHHHHHHHhhcchHhhhhcccchHHHHHHH
Q 001247 617 KSSANAQFMQSCMDILGILARFSP--LLLGGTEEELVNLLK-EENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLER 693 (1115)
Q Consensus 617 ~~~~~~~~~~~a~~LL~~iS~~~P--~lf~~~~~~L~~~l~-~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~l~~~L~~ 693 (1115)
.+.| ..-.|.+-|..+...+| ..|..|...+...|. +++.++...+|.+|+..+.. ++. ..+...|.+
T Consensus 341 -~~~n--iry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv----~~Iv~eL~~ 411 (621)
T 2vgl_A 341 -RETN--LRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR--SNA----QQIVAEMLS 411 (621)
T ss_dssp -SCHH--HHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHH----HHHHHHHHH
T ss_pred -CCcc--hHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhH----HHHHHHHHH
Confidence 1222 34567888999998887 788999999999898 77777888899999888753 222 245666777
Q ss_pred HhhcCChHHHHHHHHHHHhh
Q 001247 694 LCLEGSRRQAKYAVHALAAI 713 (1115)
Q Consensus 694 la~~Gtp~~AK~Av~~L~~~ 713 (1115)
+....++.-...+++.|+.+
T Consensus 412 yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 412 YLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp HHHHCCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 77776766666677766644
No 17
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.11 E-value=0.00011 Score=76.24 Aligned_cols=121 Identities=16% Similarity=0.122 Sum_probs=96.1
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChH
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAP 341 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ 341 (1115)
.++|.|..-|..++..+|..|+..+|++-. +..+..++....|.++.||...+...+.+= . .
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~------~ 137 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG--D------E 137 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT--C------G
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C------H
Confidence 456777777888999999999999998632 224445555568999999999999988741 1 2
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 342 QILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 342 ~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
+.++.|...+.|+|+.||.+|+.+++.+. +.+.+..+.+.+.|..+.||..|+..|+++
T Consensus 138 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 138 RAVEPLIKALKDEDGWVRQSAADALGEIG-------GERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------chhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 56778888899999999999999998763 356777888888999999999999999875
No 18
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.09 E-value=1.1e-05 Score=86.89 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=120.6
Q ss_pred hhhhhhhhhhccccCCchHHHHHHHHHHHHhhcC-CCCChhhhcHHHHHHHHhccc-CCChhHHHHHHHHhHHHHhcCCC
Q 001247 259 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV-PGSANNEQFHSVFSEFLKRLT-DRIVAVRMSVLEHVKSCLLTDPS 336 (1115)
Q Consensus 259 lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~-~~~~~~~~~~~~~~~fL~R~~-D~s~~VR~~~v~~~~~il~~~~~ 336 (1115)
++..+-|.+...+.+.+-..|..|...|+.+..+ ++ -....|..+...+.++.. |.++.||...+++.+.+...-..
T Consensus 12 i~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~-~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~ 90 (242)
T 2qk2_A 12 ILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPK-LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK 90 (242)
T ss_dssp CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSS-BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred ccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCC-CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3444555688888999999999999999999987 43 224568899999999995 99999999999999987743211
Q ss_pred C--CChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 337 R--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 337 ~--~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
. .....+++.+.+++.|+...||.+++.++..+.... . ...++..+...+.||++.||..++..|+.+...+
T Consensus 91 ~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 91 RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-S--LEAQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-C--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 0 123578999999999999999999999999876532 1 2457888999999999999999999999987764
No 19
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.02 E-value=0.0018 Score=79.56 Aligned_cols=121 Identities=11% Similarity=-0.026 Sum_probs=101.1
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHH
Q 001247 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1115)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v 324 (1115)
.|--+..+....|+++.-++..|...|.+.|+.+|..|.+++|.+-.. +++ +.+.....+...|.+|.||.+.+
T Consensus 90 ~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~---~~~---~~l~~~l~~~L~~~~~~VRk~A~ 163 (618)
T 1w63_A 90 GYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS---EMC---RDLAGEVEKLLKTSNSYLRKKAA 163 (618)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH---HHH---HHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH---HHH---HHHHHHHHHHHcCCCHHHHHHHH
Confidence 355666677778999999999999999999999999999999998632 233 56677777778899999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh
Q 001247 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1115)
Q Consensus 325 ~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~ 373 (1115)
.+...+...+|+ ....+++.+...|.|.|..|+.+|+.+++++....
T Consensus 164 ~al~~l~~~~p~--~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 164 LCAVHVIRKVPE--LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp HHHHHHHHHCGG--GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHChH--HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence 999999988875 34577888889999999999999999999876543
No 20
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.01 E-value=0.00013 Score=76.22 Aligned_cols=125 Identities=15% Similarity=0.099 Sum_probs=97.1
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChH
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAP 341 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ 341 (1115)
.++|.|..-|.+++..+|..|+..+|++=. +......+....|.++.||...+...+.+ .. .
T Consensus 81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~--~~------~ 142 (211)
T 3ltm_A 81 RAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEI--GD------E 142 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH--CC------G
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CC------H
Confidence 456777777888999999999999998732 22444555566899999999999998875 11 2
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 342 QILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 342 ~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
+.++.|...+.|+|+.||.+++.+++.+. +.+.+..+.+.+.|..+.||..|...|+++-...
T Consensus 143 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 143 RAVEPLIKALKDEDGWVRQSAADALGEIG-------GERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 56778888899999999999999999764 3567778888889999999999999999887653
No 21
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.92 E-value=6.9e-05 Score=77.76 Aligned_cols=121 Identities=21% Similarity=0.183 Sum_probs=89.7
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChH
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAP 341 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ 341 (1115)
..+|.|..-|.+++..+|..|...+|++-. +.....++....|.++.||...+...+.+- . .
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~------~ 106 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIG--D------E 106 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C------G
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c------H
Confidence 456666666777888899999988887631 234455555667888889988888877631 1 2
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 342 QILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 342 ~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
+.++.|...|.|+|+.||.+|+.+++.+.. .+.+..+.+.+.|..+.||..|+..|+++
T Consensus 107 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 107 RAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 466677778888999999998888887642 34566777888888888999999888887
No 22
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.91 E-value=6.8e-05 Score=78.44 Aligned_cols=121 Identities=21% Similarity=0.183 Sum_probs=86.4
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChH
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAP 341 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ 341 (1115)
..+|.|..-|.+++..+|..|+..+|++-. +.....++....|.++.||...+...+.+- . .
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--~------~ 111 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIG--D------E 111 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C------G
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c------H
Confidence 455666666677788888888888887632 234455555667888888888888877631 1 2
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 342 QILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 342 ~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
+.++.|...+.|+|+.||.+|+.+++.+.. .+.+..+.+.+.|..+.||..|+..|+++
T Consensus 112 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 112 RAVEPLIKALKDEDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 456677777888888888888888876632 34556667777888888888888888876
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.85 E-value=0.0015 Score=75.96 Aligned_cols=147 Identities=11% Similarity=0.141 Sum_probs=104.8
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcCC-CCChhh--hcHHHHHHHHhcccCC-ChhHHHHHHHHhHHHHhcCCCCC
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNE--QFHSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLLTDPSRA 338 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~-~~~~~~--~~~~~~~~fL~R~~D~-s~~VR~~~v~~~~~il~~~~~~~ 338 (1115)
.+|.|-..|+++++.+|..|+..++++++.. +..... ..+.....++....+. ++.||...+.....+...++...
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 4566667788999999999999999998632 212111 1224666677777777 89999999999888765433210
Q ss_pred ---ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhcc-CChhHHHHHHHHHHHHHH
Q 001247 339 ---DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRD-KSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 339 ---~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~----~v~~~~l~~l~eR~rD-Kk~~VR~~Ai~~L~~ly~ 409 (1115)
....+++.|...|.|+|+.||..|+.+++.++..... .+....+..+...+.+ ....||..|+..|+++-.
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 0124778899999999999999999999998864311 1112345566677774 789999999999998864
No 24
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00021 Score=77.69 Aligned_cols=150 Identities=11% Similarity=0.111 Sum_probs=121.9
Q ss_pred hhhhhhhccc-cCCchHHHHHHHHHHHHhhcCCC-CChh-hhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC-CCC
Q 001247 262 GVVPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPG-SANN-EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-PSR 337 (1115)
Q Consensus 262 ~Vip~Le~eL-~se~~~~R~~At~~lg~m~s~~~-~~~~-~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~-~~~ 337 (1115)
.++..|..-| ...|..+|..|.+.+|.|..+-+ ..|. .-+..+...-+.|+.|+.+.||.+...++..+..+- |..
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~ 139 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLA 139 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccc
Confidence 4555666667 56789999999999999987655 5677 667888999999999999999999988888877643 221
Q ss_pred CC--hHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC-------CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 001247 338 AD--APQILTALCDRLLDFDENVRKQVVAVICDVACHALN-------SIPVETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1115)
Q Consensus 338 ~~--~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~-------~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly 408 (1115)
.. ...+++.|..-|......||.+++..++.++..... .++.+++..+..-+-|.+..||..|+..++.++
T Consensus 140 ~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 140 SSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp TTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11 347888888888888999999999999988865432 225667888899999999999999999999999
Q ss_pred HHh
Q 001247 409 RGC 411 (1115)
Q Consensus 409 ~~~ 411 (1115)
+..
T Consensus 220 ~~v 222 (249)
T 2qk1_A 220 KIF 222 (249)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 25
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.81 E-value=0.00071 Score=78.72 Aligned_cols=241 Identities=9% Similarity=0.088 Sum_probs=148.3
Q ss_pred HHHHHHHHHHhccc--ccccHHHHHHHHHhhcCCC-ch----HHHHHHHHHHHHh-hhhhhHHHHH---HHHHhhcCCCC
Q 001247 169 SSMQTIMIVLLEES--EDIQEDLLVILLSALGRNK-ND----TARRLAMNVIEQC-AGKLEAGIKQ---FLVSSMSGDSR 237 (1115)
Q Consensus 169 ~~m~~Il~~vI~e~--~~i~~~~ld~il~~~~~~~-~~----~a~~la~~v~~~~-~~~l~~~i~~---~~~~~l~~~~~ 237 (1115)
.....++..+.... +.-.++++..|+..+.... .. .|......+|+.+ .+.+.+++.. .+...+..+..
T Consensus 107 ~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (462)
T ss_dssp CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCC
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCC
Confidence 44444444443321 1245688888888775541 22 4555556666655 3334444333 33334433210
Q ss_pred CCCCcchHHHHHHHHHhhCch-----hh-hhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcH-HHHHHHHh
Q 001247 238 PGHSHIDYHEVIYDVYRCSPQ-----IL-SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFH-SVFSEFLK 310 (1115)
Q Consensus 238 ~~~~~~~~h~li~el~~~~P~-----lL-~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~-~~~~~fL~ 310 (1115)
...-...+-+.+..+-.+..+ .. ..++|.|...+.+++..+|..|.+.++.+....+..+....+ .+|...+.
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001122222221111111 11 114555556677889999999999999999765544445556 89999999
Q ss_pred cccCCChhHHHHHHHHhHHHHhcC-------------------CCCCC----hHHHHHHHHHHcCCc-------hhHHHH
Q 001247 311 RLTDRIVAVRMSVLEHVKSCLLTD-------------------PSRAD----APQILTALCDRLLDF-------DENVRK 360 (1115)
Q Consensus 311 R~~D~s~~VR~~~v~~~~~il~~~-------------------~~~~~----~~~l~~~l~~rL~D~-------DekVR~ 360 (1115)
...|.++.||...+++...+.... +.... ...+++.+...+.+. +..||.
T Consensus 267 ~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~ 346 (462)
T 1ibr_B 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 346 (462)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHH
Confidence 999999999999998877665431 11111 145667776666543 458999
Q ss_pred HHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 001247 361 QVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 361 aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
+|+.++..++....+.+-..++..+.+.+.|.++.+|..|+..+|.+-.
T Consensus 347 ~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 347 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 9999999887754444445567788889999999999999999998754
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.67 E-value=0.0066 Score=72.74 Aligned_cols=396 Identities=11% Similarity=0.074 Sum_probs=212.4
Q ss_pred hhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCC-Chh-hhcHHHHHHHHhcccCC-ChhHHHHHHHHhHHHHhcCC
Q 001247 259 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANN-EQFHSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLLTDP 335 (1115)
Q Consensus 259 lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~-~~~-~~~~~~~~~fL~R~~D~-s~~VR~~~v~~~~~il~~~~ 335 (1115)
.+...+|.|-..|.+++..+|..|+..++++++..+. ... -........++.-..+. ++.||...+.....+...++
T Consensus 84 ~~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp ---CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 3566788888999999999999999999999986321 110 01123445555555665 79999999998888665433
Q ss_pred CCCC---hHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 001247 336 SRAD---APQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1115)
Q Consensus 336 ~~~~---~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~----~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly 408 (1115)
.... ...+++.|...|.++++.||..|+.+++.++..... .+....+..+...+.+....||..|+..|+++.
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 1100 013467777888889999999999999998754211 111235667788888888999999999999886
Q ss_pred HHhhhhccCCCcchhhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHH
Q 001247 409 RGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVR---HWVRIFSGFDRIEMKALEK 485 (1115)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~---~ll~l~~~lD~~~~ka~~~ 485 (1115)
...- ..........+-..++++.... ++.-|.. .+..+... ++.....
T Consensus 244 ~~~~-----~~~~~~~~~~~l~~L~~lL~~~--------------------d~~v~~~a~~~L~~L~~~-~~~~~~~--- 294 (530)
T 1wa5_B 244 RGKK-----PQPDWSVVSQALPTLAKLIYSM--------------------DTETLVDACWAISYLSDG-PQEAIQA--- 294 (530)
T ss_dssp CCSS-----SCCCHHHHGGGHHHHHHHTTCC--------------------CHHHHHHHHHHHHHHHSS-CHHHHHH---
T ss_pred CCCC-----CCCcHHHHHhHHHHHHHHHcCC--------------------CHHHHHHHHHHHHHHhCC-CHHHHHH---
Confidence 5310 0000111122222333332211 2222321 22222222 2221111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhhHHHHHHHHHHhccCCCH
Q 001247 486 ILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSF 565 (1115)
Q Consensus 486 il~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r~~~llk~~~~~~s~~ 565 (1115)
+.. ...+..++.+.. ..++.+....-.++..|+... +.. .+.+ -+..+...|-.++... +.
T Consensus 295 ~~~-----~~~v~~Lv~lL~----~~~~~v~~~a~~~L~~l~~~~--~~~----~~~~---~~~~~l~~L~~lL~~~-~~ 355 (530)
T 1wa5_B 295 VID-----VRIPKRLVELLS----HESTLVQTPALRAVGNIVTGN--DLQ----TQVV---INAGVLPALRLLLSSP-KE 355 (530)
T ss_dssp HHH-----TTCHHHHHHGGG----CSCHHHHHHHHHHHHHHTTSC--HHH----HHHH---HHTTHHHHHHHHTTCS-CH
T ss_pred HHh-----cCcHHHHHHHHC----CCChhhHHHHHHHHHHHHcCC--HHH----HHHH---HHcchHHHHHHHHcCC-CH
Confidence 110 122334444432 123445444444444444321 111 1111 1223444444444433 22
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhC-C--cC
Q 001247 566 DQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS-P--LL 642 (1115)
Q Consensus 566 ~~~~~a~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~-P--~l 642 (1115)
.++..--..+..+...+ .+..+.++ +..-++.|++.+... +......|...|..++... | +.
T Consensus 356 -~vr~~A~~aL~~l~~~~--~~~~~~~~--------~~~~l~~L~~lL~~~----~~~v~~~a~~aL~~l~~~~~~~~~~ 420 (530)
T 1wa5_B 356 -NIKKEACWTISNITAGN--TEQIQAVI--------DANLIPPLVKLLEVA----EYKTKKEACWAISNASSGGLQRPDI 420 (530)
T ss_dssp -HHHHHHHHHHHHHTTSC--HHHHHHHH--------HTTCHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTTTCTHH
T ss_pred -HHHHHHHHHHHHHHcCC--HHHHHHHH--------HCCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 33323333444444322 12233322 234577888766431 1123455667777776653 3 22
Q ss_pred c-----cccHHHHHHHHhhccccchHhHHHHHHHhhcchHhh----------hh--cccchHHHHHHHHhhcCChHHHHH
Q 001247 643 L-----GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ----------LA--ATSSSVDLLLERLCLEGSRRQAKY 705 (1115)
Q Consensus 643 f-----~~~~~~L~~~l~~~~~~~~~~~L~~L~~~~~~~~~~----------~~--~~~~~l~~~L~~la~~Gtp~~AK~ 705 (1115)
. .+-+..|+.++.+.++.+...++.+|.++....+.. +. -......+.|..+...+++...+.
T Consensus 421 ~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~ 500 (530)
T 1wa5_B 421 IRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEK 500 (530)
T ss_dssp HHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHH
Confidence 1 234688999998877777777888887654322110 00 011234667778877788887788
Q ss_pred HHHHHHhhcCCC
Q 001247 706 AVHALAAITKDD 717 (1115)
Q Consensus 706 Av~~L~~~~~~~ 717 (1115)
|..+|..+...+
T Consensus 501 a~~il~~~~~~~ 512 (530)
T 1wa5_B 501 AYKIIETYFGEE 512 (530)
T ss_dssp HHHHHHHHSSSC
T ss_pred HHHHHHHHCCcc
Confidence 888887665543
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.64 E-value=0.01 Score=71.00 Aligned_cols=392 Identities=14% Similarity=0.075 Sum_probs=209.3
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhh--hcHHHHHHHHhcccCCC-hhHHHHHHHHhHHHHhcCCCCC
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE--QFHSVFSEFLKRLTDRI-VAVRMSVLEHVKSCLLTDPSRA 338 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~--~~~~~~~~fL~R~~D~s-~~VR~~~v~~~~~il~~~~~~~ 338 (1115)
.-+|.|-..|.++++.+|..|+..++++++..+..... ........++.-..+.+ +.||...+.+...+...++...
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 45788888899999999999999999998865311111 00122333333334444 8999999999888765433210
Q ss_pred ---ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHHH
Q 001247 339 ---DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERL-RDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 339 ---~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~----~v~~~~l~~l~eR~-rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
.....++.|...|.++++.||..|+.+++.++..... .+....+..+...+ .+....||..|+..|+++-..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 0013678888999999999999999999998753211 11112455667777 677899999999999988653
Q ss_pred hhhhccCCCcchhhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHH
Q 001247 411 CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH---WVRIFSGFDRIEMKALEKIL 487 (1115)
Q Consensus 411 ~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~---ll~l~~~lD~~~~ka~~~il 487 (1115)
. ..........+-..++.+... .+++-+... +..+..+ ++.....+ .
T Consensus 234 ~------~~~~~~~~~~~l~~L~~lL~~--------------------~~~~v~~~a~~aL~~l~~~-~~~~~~~~---~ 283 (528)
T 4b8j_A 234 K------PQPSFEQTRPALPALARLIHS--------------------NDEEVLTDACWALSYLSDG-TNDKIQAV---I 283 (528)
T ss_dssp S------SCCCHHHHTTHHHHHHHHTTC--------------------CCHHHHHHHHHHHHHHTSS-CHHHHHHH---H
T ss_pred C------CCCcHHHHHHHHHHHHHHHCC--------------------CCHHHHHHHHHHHHHHHcC-CHHHHHHH---H
Confidence 2 000011111112222222211 122233222 2222222 22211111 0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhhhHHHHHHHHHHhccCCCHHH
Q 001247 488 EQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQ 567 (1115)
Q Consensus 488 ~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r~~~llk~~~~~~s~~~~ 567 (1115)
. ...+..++.+.. ..++.++...-.++..|+.. .... .+.+ -+..+...|..++....+...
T Consensus 284 ~-----~g~v~~Lv~lL~----~~~~~v~~~a~~~L~nl~~~---~~~~---~~~~---~~~~~l~~L~~lL~~~~~~~v 345 (528)
T 4b8j_A 284 E-----AGVCPRLVELLL----HPSPSVLIPALRTVGNIVTG---DDAQ---TQCI---IDHQALPCLLSLLTQNLKKSI 345 (528)
T ss_dssp H-----TTCHHHHHHHTT----CSCHHHHHHHHHHHHHHTTS---CHHH---HHHH---HTTTHHHHHHHHHHSCCCHHH
T ss_pred H-----cCHHHHHHHHHc----CCChhHHHHHHHHHHHHHcC---CHHH---HHHH---HHhhhHHHHHHHHcCCCcHHH
Confidence 0 023344444432 12345555544445555432 1111 1111 123344444444444323322
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhh-CCcCc---
Q 001247 568 AFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARF-SPLLL--- 643 (1115)
Q Consensus 568 ~~~a~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~-~P~lf--- 643 (1115)
...+ -..+..+.... .+....++ +..-++.|++.+... +......|...|..++.. .|+..
T Consensus 346 ~~~A-~~~L~nl~~~~--~~~~~~~~--------~~~~i~~L~~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~~l 410 (528)
T 4b8j_A 346 KKEA-CWTISNITAGN--KDQIQAVI--------NAGIIGPLVNLLQTA----EFDIKKEAAWAISNATSGGSHDQIKYL 410 (528)
T ss_dssp HHHH-HHHHHHHHTSC--HHHHHHHH--------HTTCHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHH-HHHHHHHHCCC--HHHHHHHH--------HCCCHHHHHHHHhcC----CHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 2222 22233332221 12222222 223477777766432 112345566677777665 44432
Q ss_pred --cccHHHHHHHHhhccccchHhHHHHHHHhhcchHhh----------hh-c-ccchHHHHHHHHhhcCChHHHHHHHHH
Q 001247 644 --GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ----------LA-A-TSSSVDLLLERLCLEGSRRQAKYAVHA 709 (1115)
Q Consensus 644 --~~~~~~L~~~l~~~~~~~~~~~L~~L~~~~~~~~~~----------~~-~-~~~~l~~~L~~la~~Gtp~~AK~Av~~ 709 (1115)
.+.+..|+++|...++.+...++.+|.++....... +. . ......+.++++...+++...+.|..+
T Consensus 411 ~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~i 490 (528)
T 4b8j_A 411 VSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKI 490 (528)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 245789999999877777777788877664322110 00 0 112346678888888888888899998
Q ss_pred HHhhcCC
Q 001247 710 LAAITKD 716 (1115)
Q Consensus 710 L~~~~~~ 716 (1115)
|..+.+.
T Consensus 491 l~~~~~~ 497 (528)
T 4b8j_A 491 LEAYWMD 497 (528)
T ss_dssp HHHHCC-
T ss_pred HHHHCCC
Confidence 8766554
No 28
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.60 E-value=0.07 Score=65.48 Aligned_cols=123 Identities=13% Similarity=0.049 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcc--cCCChhHHHH
Q 001247 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRL--TDRIVAVRMS 322 (1115)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~--~D~s~~VR~~ 322 (1115)
.|--+..+.+..|+++.-++..+...|++.|+.+|-.|.+++|.+-. + +++ +.+-..-.+-. .|.+|-||..
T Consensus 94 ~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~--e~~---~~l~~~v~~~l~~~d~~~~VRK~ 167 (621)
T 2vgl_A 94 GYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS-R--EMA---EAFAGEIPKILVAGDTMDSVKQS 167 (621)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-H--HHH---HHHTTHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-H--HHH---HHHHHHHHHHHhCCCCCHHHHHH
Confidence 35556666677899999999999999999999999999999998843 1 222 33444444444 7999999999
Q ss_pred HHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh
Q 001247 323 VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1115)
Q Consensus 323 ~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~ 373 (1115)
.+-++..+...+|+.-...++.+.+.+.|.|+|..|+.+|+.++++++..+
T Consensus 168 A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 168 AALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 999999988877753211267888888999999999999999999887654
No 29
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.55 E-value=0.00038 Score=76.10 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=94.6
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHh-cccCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLK-RLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~-R~~D~s~~VR~~~v~~~~~il~~~~~~~~~ 340 (1115)
.++|.|-.-|.+++..+|..|+..+|++-..+. ..+.++..+.. -.+|.++.||...+...+.+-..++. ..
T Consensus 54 ~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~ 126 (280)
T 1oyz_A 54 DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI--YS 126 (280)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--cc
Confidence 356667777788899999999999998753322 12333333221 24688999999999988876543332 13
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 341 ~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
.++++.|...+.|+|+.||.+|+.+++.+.. .+.+..+.+.+.|..+.||..|+..|+.+
T Consensus 127 ~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 127 PKIVEQSQITAFDKSTNVRRATAFAISVIND-------KATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 4788888889999999999999988886543 23456667788899999999999999876
No 30
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.54 E-value=2.6e-05 Score=75.74 Aligned_cols=120 Identities=10% Similarity=0.034 Sum_probs=88.8
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChH
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAP 341 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ 341 (1115)
..+|.|..-|.+++..+|..|...+|++- .+ . ....+....|.++.||...+...+.+= ..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~-~~--~--------~~~L~~~L~d~~~~vR~~A~~aL~~~~--------~~ 72 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMG-DE--A--------FEPLLESLSNEDWRIRGAAAWIIGNFQ--------DE 72 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCS-ST--T--------HHHHHHGGGCSCHHHHHHHHHHHGGGC--------SH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhC-ch--H--------HHHHHHHHcCCCHHHHHHHHHHHHhcC--------CH
Confidence 45677888889999999999999998652 21 1 245556667999999999999877631 13
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 342 QILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 342 ~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
+.++.|...|.|+|+.||.+|+.+++.+. +.+.+..+.+.+.|....||..|+..|+++
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~-------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIG-------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHC-------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 56788888889999999999999999765 345677788888999999999999998753
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.54 E-value=0.078 Score=65.12 Aligned_cols=149 Identities=13% Similarity=0.045 Sum_probs=106.0
Q ss_pred hhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCC-hhhhcHHHHHHHHhcccC-CChhHHHHHHHHhHHHHhcCCC
Q 001247 259 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLTD-RIVAVRMSVLEHVKSCLLTDPS 336 (1115)
Q Consensus 259 lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~-~~~~~~~~~~~fL~R~~D-~s~~VR~~~v~~~~~il~~~~~ 336 (1115)
+=..++|.|..-|.++++.+|..|+..|+.+-...... .....+......++...+ .++.+|...+.....+- .+++
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls-~~~~ 89 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHRE 89 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT-TSHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh-cChh
Confidence 44557888888888999999999999999998764311 112345666666666654 48899998888877532 2221
Q ss_pred C-C--ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 001247 337 R-A--DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1115)
Q Consensus 337 ~-~--~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~----v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly 408 (1115)
. . .....++.|...|.++|+.||..|+.++..++...-.. +....+..+.+.+++....+|..|+..|+++-
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 0 0 00146678888999999999999999999988653211 12345678888999999999988887777665
No 32
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.0011 Score=72.05 Aligned_cols=152 Identities=10% Similarity=0.100 Sum_probs=118.7
Q ss_pred hhhhhhhhhccccCCchHHHHHHHHHHHH-hhcC-CCCCh-hhhcHHHHHHHHhcc-cCCChhHHHHHHHHhHHHHhcC-
Q 001247 260 LSGVVPYLTGELLTDQLDTRLKAVGLVGD-LFAV-PGSAN-NEQFHSVFSEFLKRL-TDRIVAVRMSVLEHVKSCLLTD- 334 (1115)
Q Consensus 260 L~~Vip~Le~eL~se~~~~R~~At~~lg~-m~s~-~~~~~-~~~~~~~~~~fL~R~-~D~s~~VR~~~v~~~~~il~~~- 334 (1115)
+.-.=|.+...+.+.+-..|..|..-|+. ++.+ +.... ...|.+++....+.. +|.++.||...+++.+.+...-
T Consensus 14 ~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~ 93 (249)
T 2qk1_A 14 LDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLK 93 (249)
T ss_dssp GGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 33344556777889999999999999999 8854 32111 357899999999999 8999999999999998876432
Q ss_pred -CCC--CChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-cCC---CCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 335 -PSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNS---IPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 335 -~~~--~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~-l~~---v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
+.- .-...++..+.+++.|....||.++..++-.+.... ... -...++..+.+-+..|++.||.+|+..|+++
T Consensus 94 ~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 94 TPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp TTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 221 123578999999999999999999888877666533 111 1446888899999999999999999999999
Q ss_pred HHHh
Q 001247 408 FRGC 411 (1115)
Q Consensus 408 y~~~ 411 (1115)
...+
T Consensus 174 ~~~~ 177 (249)
T 2qk1_A 174 MKEE 177 (249)
T ss_dssp HHHC
T ss_pred HHHc
Confidence 9874
No 33
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.46 E-value=0.00053 Score=74.91 Aligned_cols=123 Identities=13% Similarity=0.111 Sum_probs=84.3
Q ss_pred hhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCC
Q 001247 260 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1115)
Q Consensus 260 L~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~ 339 (1115)
-..++|.|..-|.+++..+|..|...+|.+-. + ......+....|.++.||...+...+.+ . . .
T Consensus 126 ~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~-~--~---~ 189 (280)
T 1oyz_A 126 SPKIVEQSQITAFDKSTNVRRATAFAISVIND-K---------ATIPLLINLLKDPNGDVRNWAAFAININ-K--Y---D 189 (280)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHH-T--C---C
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-H---------HHHHHHHHHHcCCCHHHHHHHHHHHHhh-c--c---C
Confidence 33556677777778888888888888886532 1 1233444455688888888888887764 1 1 1
Q ss_pred hHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 340 APQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 340 ~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
..++++.|...+.|+|+.||..|+.+++.+. +.+.+..+...+.|.. ||..|+..|+++
T Consensus 190 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 190 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-------DKRVLSVLCDELKKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-------CGGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------CHhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence 2467788888888888888888888887654 3445666666676643 888888888765
No 34
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.44 E-value=0.0044 Score=71.87 Aligned_cols=299 Identities=14% Similarity=0.118 Sum_probs=172.8
Q ss_pred hhhcCC-CcchHHHHHHHHHHHHhhcCCCCCCCchHHH-----HHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhh
Q 001247 63 VLLKHQ-DKDVKLLVATCICEITRITAPEAPYSDDVLK-----DIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSC 136 (1115)
Q Consensus 63 ~lL~h~-d~~Vr~~~acCl~dilRi~APdaPy~~~~lk-----dif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~ 136 (1115)
.+|++. |.+||..++-||..+..- +.+..+ ++...++..+ .+++...-.+....|.+++....-
T Consensus 71 ~~L~~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~i~~L~~lL---~~~~~~vr~~a~~~L~~l~~~~~~ 140 (450)
T 2jdq_A 71 EFLKRKENCTLQFESAWVLTNIASG-------NSLQTRIVIQAGAVPIFIELL---SSEFEDVQEQAVWALGNIAGDSTM 140 (450)
T ss_dssp HHHTCTTCHHHHHHHHHHHHHHHSS-------CHHHHHHHHHTTHHHHHHHHT---TCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcC-------CHHHHHHHHhCCCHHHHHHHH---cCCCHHHHHHHHHHHHHHccCCHH
Confidence 356677 889999999999998761 222222 2344444444 332222223334555555432100
Q ss_pred hhhccCCchHHH--HHHHHHHHHhhcCCChhcHHHHHHHHHHHHhccc-cc----ccHHHHHHHHHhhcCCCchHHHHHH
Q 001247 137 VVMLDLECDELV--NEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-ED----IQEDLLVILLSALGRNKNDTARRLA 209 (1115)
Q Consensus 137 vl~~dl~~~~li--~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~-~~----i~~~~ld~il~~~~~~~~~~a~~la 209 (1115)
..+.+ ...+..+......+....+.......+..+.... .. +-.+++..++..+.... ..
T Consensus 141 -------~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~----- 207 (450)
T 2jdq_A 141 -------CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSD-TD----- 207 (450)
T ss_dssp -------HHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCC-HH-----
T ss_pred -------HHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCC-HH-----
Confidence 01111 1233344444444445667777777777776443 11 12455566655553321 11
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHh
Q 001247 210 MNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDL 289 (1115)
Q Consensus 210 ~~v~~~~~~~l~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m 289 (1115)
+.......+..+..+.. .....+ +-.+++|.|-.-|.+++..+|..|...+|.+
T Consensus 208 ----------v~~~a~~~L~~l~~~~~-------~~~~~~---------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 208 ----------VLADACWALSYLSDGPN-------DKIQAV---------IDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp ----------HHHHHHHHHHHHTSSSH-------HHHHHH---------HHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHCCCc-------HHHHHH---------HHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 11111122222211100 000000 0124566666677788999999999999999
Q ss_pred hcCCCCChhh--hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC---ChHHHHHHHHHHcCCchhHHHHHHHH
Q 001247 290 FAVPGSANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA---DAPQILTALCDRLLDFDENVRKQVVA 364 (1115)
Q Consensus 290 ~s~~~~~~~~--~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~---~~~~l~~~l~~rL~D~DekVR~aaV~ 364 (1115)
....+ +..+ .........+.-..|.++.||...+...+++...++... ....+++.|...|.|.+.+||.+|+.
T Consensus 262 ~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 340 (450)
T 2jdq_A 262 VTGDD-IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW 340 (450)
T ss_dssp TTSCH-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhCCh-HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 87642 1111 012355666666777889999999999988665333210 00246678888889999999999999
Q ss_pred HHHHhhhh-hcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 365 VICDVACH-ALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 365 ~i~~la~~-~l~----~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
+++.++.. ... .+....+..+.+-+.++.+.||..|+..|+++....
T Consensus 341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 99998754 211 122346677888899999999999999999988753
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.27 E-value=0.0025 Score=76.42 Aligned_cols=333 Identities=12% Similarity=0.074 Sum_probs=179.6
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCC-hhhHHHHHHHHHhhh--hhhhhc
Q 001247 64 LLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPS-FGRRVVILETLAKYR--SCVVML 140 (1115)
Q Consensus 64 lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdif~l~~~~~~~L~d~~~~~-~~~~~~lLe~la~vk--s~vl~~ 140 (1115)
.|++.|.++|..++.+|..++.-. +++|...-.-.++...++..+ .+++++. -......|.+++... ..-.+.
T Consensus 95 ~L~s~~~~~~~~A~~~L~~ll~~~-~~~~~~~~~~~g~i~~Lv~~L---~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~ 170 (530)
T 1wa5_B 95 QLNSDDMQEQLSATVKFRQILSRE-HRPPIDVVIQAGVVPRLVEFM---RENQPEMLQLEAAWALTNIASGTSAQTKVVV 170 (530)
T ss_dssp HHSCSSHHHHHHHHHHHHHHTCCS-SSCSHHHHHHTTCHHHHHHTT---STTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCC-CCccHHHHHHCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 467889999999999998887632 223321111123444555443 4433332 223344455554311 011111
Q ss_pred cCCchHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhccccc-----ccHHHHHHHHHhhcCCCch---HHHHHHHHH
Q 001247 141 DLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-----IQEDLLVILLSALGRNKND---TARRLAMNV 212 (1115)
Q Consensus 141 dl~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~-----i~~~~ld~il~~~~~~~~~---~a~~la~~v 212 (1115)
+-.+=+.+.++.+ . ....|.......|..+....+. +...++..++..+...... .|...-..+
T Consensus 171 ~~g~i~~Lv~lL~-------~-~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 171 DADAVPLFIQLLY-------T-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HTTCHHHHHHHHH-------H-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHc-------C-CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 2111122222221 1 2345555556666666544322 1223455555555432211 111111222
Q ss_pred HHHhhhhh----hHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhh-----hhhhhhhccccCCchHHHHHHH
Q 001247 213 IEQCAGKL----EAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILS-----GVVPYLTGELLTDQLDTRLKAV 283 (1115)
Q Consensus 213 ~~~~~~~l----~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~-----~Vip~Le~eL~se~~~~R~~At 283 (1115)
|....... ...+-..+..++..++ ......+-..+..|....|+... +++|.|-.-|.+++..+|..|.
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~ 320 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKLIYSMD--TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPAL 320 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred hCCCCCCCcHHHHHhHHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHH
Confidence 21110100 0111112223333221 11111234455555544444332 6788888888999999999999
Q ss_pred HHHHHhhcCCCCChhh--hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC---ChHHHHHHHHHHcCCchhHH
Q 001247 284 GLVGDLFAVPGSANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA---DAPQILTALCDRLLDFDENV 358 (1115)
Q Consensus 284 ~~lg~m~s~~~~~~~~--~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~---~~~~l~~~l~~rL~D~DekV 358 (1115)
.++|.+....+. ..+ ........++.-..+.++.||...+.....+...++... ....+++.|...|.+.+..|
T Consensus 321 ~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 399 (530)
T 1wa5_B 321 RAVGNIVTGNDL-QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKT 399 (530)
T ss_dssp HHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HHHHHHHcCCHH-HHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 999999865321 111 011344455555667789999999999888665333200 00135567777888899999
Q ss_pred HHHHHHHHHHhhhhh-c--C----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 359 RKQVVAVICDVACHA-L--N----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 359 R~aaV~~i~~la~~~-l--~----~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
|.+|+.+++.++... . . .+....+..+.+.+.+..+.||..|+..|.++....
T Consensus 400 ~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 400 KKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999987642 1 1 112235667788888999999999999999998764
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.24 E-value=0.012 Score=70.29 Aligned_cols=150 Identities=15% Similarity=0.185 Sum_probs=106.0
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCCh-hhhcHHHHHHHHhcccCC-ChhHHHHHHHHhHHHHhcCCCCC-
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLLTDPSRA- 338 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~-~~~~~~~~~~fL~R~~D~-s~~VR~~~v~~~~~il~~~~~~~- 338 (1115)
+++|.|-.-|.+++..+|..|..+||.+....+... .--.......++.-..+. ++.||...+....++...++...
T Consensus 286 g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~ 365 (528)
T 4b8j_A 286 GVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ 365 (528)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH
Confidence 467777777888899999999999999987542110 001122344444444566 89999999999888765333100
Q ss_pred --ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-cCC----CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 339 --DAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNS----IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 339 --~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~-l~~----v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
....+++.|...|.+.|+.||.+|+.+++.++... ... +....+..+.+.+.++...||..|+..|+++....
T Consensus 366 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 366 AVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 00134567778888889999999999999987651 111 12235677888899999999999999999998764
No 37
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.18 E-value=0.0045 Score=62.75 Aligned_cols=212 Identities=16% Similarity=0.209 Sum_probs=151.8
Q ss_pred HHHHHHHHHhhcCCC---chHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcC-CCCCCCCcchHHHHHHHHHhhCchhhhh
Q 001247 187 EDLLVILLSALGRNK---NDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSG-DSRPGHSHIDYHEVIYDVYRCSPQILSG 262 (1115)
Q Consensus 187 ~~~ld~il~~~~~~~---~~~a~~la~~v~~~~~~~l~~~i~~~~~~~l~~-~~~~~~~~~~~h~li~el~~~~P~lL~~ 262 (1115)
.++++.++..+-..- ...|-.+-..+.....+-.+|.+...|. ++.. ...+-. ...-.-+-.+.++-|+++-+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~v-m~~ksEaIplt--qeIa~a~G~la~i~Pe~v~~ 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFS-LLKKSEAIPLT--QEIAKAFGQMAKEKPELVKS 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH-HHHHCCSHHHH--HHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHH-HHhhcccCchH--HHHHHHHhHHHHhCHHHHHh
Confidence 355665555553221 1155566666667777777888877775 2222 111110 12233455667889999999
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~ 342 (1115)
|+|-|-..+...+++.|..-.-.+|++.... ..--+..++.++.=..|++-.=|...+.+.+.+=.|++. -..-
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIaran----P~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~--yv~P 181 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIAKAN----PMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFK--YVNP 181 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHH--HHGG
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHHHhC----hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCcc--ccCc
Confidence 9999999999999999999999999887643 244467888898888999999999999998876566552 1223
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 001247 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 343 l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
-++.|...|+|-||-||..||+++..+|..+.. + -..+..-.+++.|...-|-+..-++|+++--
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-l-Rkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLNDK-L-RKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-H-HHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-H-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 456777889999999999999999999876544 1 1234455689999999999988889988754
No 38
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.08 E-value=0.0026 Score=67.95 Aligned_cols=147 Identities=10% Similarity=0.077 Sum_probs=107.9
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCC-hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC--
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA-- 338 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~-~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~-- 338 (1115)
+++|.|-.-|.+++..+|..|+..||.+...+... -.-.....+...+.-..|.++.||...+....++...++...
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 175 (252)
T 4db8_A 96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 175 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 35677777778899999999999999997764321 111223456667777788899999999999988665443210
Q ss_pred -ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 001247 339 -DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1115)
Q Consensus 339 -~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~----~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly 408 (1115)
....+++.|...|.++|+.||..|+.+++.++..... .+....+..+.+.+++..+.||+.|...|+++.
T Consensus 176 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 176 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 0023567888899999999999999999998753211 112235677889999999999999999998864
No 39
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.82 E-value=0.0014 Score=69.47 Aligned_cols=150 Identities=15% Similarity=0.131 Sum_probs=110.0
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCCh-hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC--
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA-- 338 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~-~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~-- 338 (1115)
+++|.|-.-|.++++.+|..|...|+.+....+..- .-.....+...+.-..+.++.||...+....++...++...
T Consensus 86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 165 (252)
T 4hxt_A 86 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 165 (252)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 456667777778999999999999999985432110 00112356666666778889999999999988665443210
Q ss_pred -ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 339 -DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 339 -~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~----v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
....+++.|...+.++|+.||..++.+++.++...... +....+..+.+-+.+....||+.|+..|+++....
T Consensus 166 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 166 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 01236788999999999999999999999988632211 12235678889999999999999999999998864
No 40
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.82 E-value=0.19 Score=59.38 Aligned_cols=150 Identities=13% Similarity=0.046 Sum_probs=103.2
Q ss_pred chhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCC-hhhhcHHHHHHHHhccc-CCChhHHHHHHHHhHHHHhcC
Q 001247 257 PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLT-DRIVAVRMSVLEHVKSCLLTD 334 (1115)
Q Consensus 257 P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~-~~~~~~~~~~~fL~R~~-D~s~~VR~~~v~~~~~il~~~ 334 (1115)
|.+-.+.+|.|..-|.++++.+|..|+..++.+-...... ..-..+......++... +.++.+|...+.....+-. +
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~ 90 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-H 90 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-S
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-C
Confidence 3444667888888888999999999999999998653210 11123455555555543 3478999998888877432 2
Q ss_pred CCC-C--ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 335 PSR-A--DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 335 ~~~-~--~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~----v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
++. . .....++.|...|.++|+.||..|+.++..++...... +....+..+.+.+++....||..|...|+.+
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 210 0 00135678888999999999999999999987653221 1234567888899999999999988888755
No 41
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.80 E-value=0.14 Score=64.41 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=105.6
Q ss_pred hhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCC-hhhhcHHHHHHHHhccc-CCChhHHHHHHHHhHHHHhcCC
Q 001247 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLT-DRIVAVRMSVLEHVKSCLLTDP 335 (1115)
Q Consensus 258 ~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~-~~~~~~~~~~~fL~R~~-D~s~~VR~~~v~~~~~il~~~~ 335 (1115)
.+....+|.|..-|.+++..+|..|+.+|+.+-...+.. .....+......+.... +.++.+|...+.....+ ..++
T Consensus 146 ~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~L-s~~~ 224 (780)
T 2z6g_A 146 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL-SHHR 224 (780)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HTSH
T ss_pred HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHH-hCCc
Confidence 445778888888888999999999999999987653211 11224555555555443 34899999999998873 3222
Q ss_pred CC-C--ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC---CC-CHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 336 SR-A--DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN---SI-PVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 336 ~~-~--~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~---~v-~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
+. . .....++.|...|.+.++.||..|+.++..++...-. .+ ....+..+.+.+++....||..|+..|..+
T Consensus 225 ~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 225 EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303 (780)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 11 0 0114667888999999999999999999998864322 11 223566788888898999999998888744
No 42
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.69 E-value=0.0014 Score=67.90 Aligned_cols=146 Identities=10% Similarity=0.081 Sum_probs=107.1
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhh--hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC--
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA-- 338 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~--~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~-- 338 (1115)
+.|.|-.-|.++|+.+|..|...|+.+..... .... .........+.-..+.++.||...+....++...++...
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 45566666889999999999999999985532 1111 111456667777778899999999999888664443210
Q ss_pred -ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 001247 339 -DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 339 -~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~----~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
.....++.|...|.++|+.||..|+.+++.++..... .+....+..+.+.+++....||..|+..|+++-.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 0013567888899999999999999999998753221 1223467788899999999999999999999865
No 43
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.63 E-value=0.0019 Score=66.98 Aligned_cols=146 Identities=10% Similarity=0.075 Sum_probs=106.0
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCCh-hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC--
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA-- 338 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~-~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~-- 338 (1115)
+++|.|-.-|.+++..+|..|...||.+....+..- .-.........+.-..+.++.||...+....++...++...
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (210)
T 4db6_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 567778888888999999999999999985432110 00011234455555677789999999999888665443210
Q ss_pred -ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 339 -DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 339 -~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~----~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
....+++.|...+.++|++||..|+.+++.++..... .+....+..+.+.+.+....||+.|...|+++
T Consensus 134 ~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 0124678888999999999999999999998764211 11223567888899999999999999999886
No 44
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.57 E-value=0.0024 Score=67.64 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=107.1
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhh--hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC-
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA- 338 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~--~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~- 338 (1115)
+++|.|-.-|.+++..+|..|+..|+.+..... .... ........++.-..|.++.||...+.....+...++...
T Consensus 44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 122 (252)
T 4hxt_A 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPD-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 567777777888999999999999999987632 1110 011234455555668889999999999888664443210
Q ss_pred --ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 001247 339 --DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 339 --~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~----~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
.....++.|.+.+.++|+.||..++.+++.++..... .+....+..+.+.+.+....||..|+..|+++-.
T Consensus 123 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 123 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 0014678888999999999999999999988763211 1123467788899999999999999999988754
No 45
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.52 E-value=0.0026 Score=67.85 Aligned_cols=146 Identities=12% Similarity=0.095 Sum_probs=107.3
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhh--hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC-C
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-A 338 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~--~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~-~ 338 (1115)
+++|.|-.-|.+++..+|..|+..||.+..... .... .........+.-..+.++.||...+....++....+.. .
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (252)
T 4db8_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence 477888888888999999999999999987432 1111 01134556666667788999999999988865433211 0
Q ss_pred --ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 001247 339 --DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1115)
Q Consensus 339 --~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~----v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly 408 (1115)
....+++.|...|.|+|+.||..|+.+++.++...... +....+..+.+.+.+....||..|+..|+++-
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 01146788899999999999999999999988633111 12235667888899999999999999999985
No 46
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.47 E-value=0.028 Score=61.25 Aligned_cols=142 Identities=12% Similarity=0.110 Sum_probs=110.5
Q ss_pred hhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHh-cccCCChhHHHHHHHHhHHHHhc---C-CCC--
Q 001247 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLK-RLTDRIVAVRMSVLEHVKSCLLT---D-PSR-- 337 (1115)
Q Consensus 265 p~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~-R~~D~s~~VR~~~v~~~~~il~~---~-~~~-- 337 (1115)
+.+...|-+.|-..|..|.+.+-+.+.... .-....-|+.-.|+. |+.|..+.|=..+++....++.. . +..
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 455666777899999999999999887533 223344555666877 99999999999999999887632 1 111
Q ss_pred CChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 338 ~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~-~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
.++..++++|.+|+-|+.|+||-++-..+..+..- .|.. ++..+.+-++.|++.+|.+++..++.+...+
T Consensus 128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v----~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV----VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 13467889999999999999999988777655422 2444 7888899999999999999999999999986
No 47
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.029 Score=61.35 Aligned_cols=143 Identities=15% Similarity=0.143 Sum_probs=108.1
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcCCCCC--------hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA--------NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD 334 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~--------~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~ 334 (1115)
=+| |++.|.+-+=..|+.|.+-+.++|...... ....++..|.. +..|..+.|-...+++...++...
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk---~l~DsN~~v~~~al~~l~~~~~~~ 86 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQ---YITDSNVVAQEQAIVALNSLIDAF 86 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHH---HTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHH---HhccchHHHHHHHHHHHHHHHHHh
Confidence 467 889999999999999999999999764311 12344555554 457999999999999988776532
Q ss_pred CC-C-------CChHHHHHHHHHH-cCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 001247 335 PS-R-------ADAPQILTALCDR-LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1115)
Q Consensus 335 ~~-~-------~~~~~l~~~l~~r-L~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~ 405 (1115)
.. . .....++..|.+| |-|+..++|..++.++..++.. ......++..+..-+..|++.||.+++..|+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~--~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 87 ASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL--DTSITQSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT--SSSSHHHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred hhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 21 0 1124567788877 8899999999999988766532 2234566778888899999999999999999
Q ss_pred HHHHHh
Q 001247 406 DIFRGC 411 (1115)
Q Consensus 406 ~ly~~~ 411 (1115)
++...+
T Consensus 165 ~~l~~f 170 (278)
T 4ffb_C 165 ELMAAF 170 (278)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999886
No 48
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.27 E-value=0.069 Score=58.16 Aligned_cols=180 Identities=17% Similarity=0.116 Sum_probs=124.7
Q ss_pred HHHHHHHHHhhCchhhhhh----hhhhhccccCCchHHHHHHHHHHHHhhc---CCCCChhhhc-HHHHHHHHhcccCCC
Q 001247 245 YHEVIYDVYRCSPQILSGV----VPYLTGELLTDQLDTRLKAVGLVGDLFA---VPGSANNEQF-HSVFSEFLKRLTDRI 316 (1115)
Q Consensus 245 ~h~li~el~~~~P~lL~~V----ip~Le~eL~se~~~~R~~At~~lg~m~s---~~~~~~~~~~-~~~~~~fL~R~~D~s 316 (1115)
+.+.+.+.-...|+-+.+. ++-+..-+...|..+=..+.+++..+|. +.+..+...- ..+--..+.|.-|..
T Consensus 66 ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k 145 (266)
T 2of3_A 66 ALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAK 145 (266)
T ss_dssp HHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSS
T ss_pred HHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCCh
Confidence 3444444444456544443 3323333446677777777777776663 3333333222 344557799999999
Q ss_pred hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHH---HHHHHhhccCC
Q 001247 317 VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV---KLVAERLRDKS 393 (1115)
Q Consensus 317 ~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l---~~l~eR~rDKk 393 (1115)
..||-..-+....+..-.| .+-+.+.+.+-+..-..++|.+.+..+..+-...--. |...+ ..++.-+-|+.
T Consensus 146 ~~vR~~~r~il~~l~~v~~----~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-~~~~l~~~~~ia~ll~D~d 220 (266)
T 2of3_A 146 DNMRTSVRDIVNVLSDVVG----PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-PLKSLSVEKTVAPFVGDKD 220 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHC----HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-GGGGGCHHHHHGGGGGCSS
T ss_pred HHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-ccccccchHHHHHHHcCCC
Confidence 9999998887766544333 3468888888888889999999999998876543222 55677 99999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhh
Q 001247 394 VLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRC 435 (1115)
Q Consensus 394 ~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~il~~ 435 (1115)
..||..|++++..+|+.. |......++.+|.+..+.
T Consensus 221 ~~VR~aAl~~lve~y~~~------Gd~v~k~lg~L~~~~~~~ 256 (266)
T 2of3_A 221 VNVRNAAINVLVACFKFE------GDQMWKAAGRMADKDKSL 256 (266)
T ss_dssp HHHHHHHHHHHHHHHHHH------TTHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh------hHHHHHHHhcCCHHHHHH
Confidence 999999999999999985 444455667777776654
No 49
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.25 E-value=0.2 Score=50.99 Aligned_cols=197 Identities=19% Similarity=0.269 Sum_probs=143.4
Q ss_pred CCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCchHH-HHHHHH---HHHHhhhhhhHHHHHHHHHhhcCCC
Q 001247 161 DDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTA-RRLAMN---VIEQCAGKLEAGIKQFLVSSMSGDS 236 (1115)
Q Consensus 161 ~~~~~~v~~~m~~Il~~vI~e~~~i~~~~ld~il~~~~~~~~~~a-~~la~~---v~~~~~~~l~~~i~~~~~~~l~~~~ 236 (1115)
++.-=.|...-..++..++.+.+.+-..+++.++.-+.+...-|. ..+|+. +-....+...+.|--.|.+--.|+
T Consensus 42 DDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd- 120 (253)
T 2db0_A 42 DDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGD- 120 (253)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS-
T ss_pred ccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCC-
Confidence 344445777788999999999999999999988877654332222 333332 223345556666666666643343
Q ss_pred CCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhc----c
Q 001247 237 RPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR----L 312 (1115)
Q Consensus 237 ~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R----~ 312 (1115)
.+..+..--.+-|+.+..|+++.+|.-.+-.-|.+.|..-|+.|...+|-| ...++.+-.-||-| .
T Consensus 121 --~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~al--------Gen~~~yv~PfLprL~aLL 190 (253)
T 2db0_A 121 --EKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAM--------GENSFKYVNPFLPRIINLL 190 (253)
T ss_dssp --HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC--------CTTTHHHHGGGHHHHHGGG
T ss_pred --ccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH--------hccCccccCcchHHHHHHH
Confidence 122334456888999999999999999999999999999999999998833 23344555555555 5
Q ss_pred cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001247 313 TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1115)
Q Consensus 313 ~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1115)
.|.+.-||...|+...++-..||. .+-++..-.+++.|+.+-|-..++.+++.+..
T Consensus 191 ~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 191 HDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 899999999999999998887774 34555555668999999999999999887653
No 50
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.11 E-value=0.009 Score=57.58 Aligned_cols=87 Identities=16% Similarity=0.097 Sum_probs=69.7
Q ss_pred hhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 001247 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1115)
Q Consensus 264 ip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l 343 (1115)
+|.|..-|.+++..+|..|+..+|++-. +......+....|.++.||...+...+.+= ..+.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--------~~~a 105 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG--------GERV 105 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--------SHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHH
Confidence 4677777888999999999999998632 344555556667999999999999988742 1367
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHH
Q 001247 344 LTALCDRLLDFDENVRKQVVAVICD 368 (1115)
Q Consensus 344 ~~~l~~rL~D~DekVR~aaV~~i~~ 368 (1115)
++.|...+.|+|..||.+|+.+++.
T Consensus 106 ~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 106 RAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 8888889999999999999887653
No 51
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.10 E-value=0.19 Score=63.43 Aligned_cols=142 Identities=14% Similarity=0.108 Sum_probs=94.9
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC---CC
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---AD 339 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~---~~ 339 (1115)
-+|.+-..|.+.+..+|..|.+.++.+ . +..+. ...|..++.-..+.++.||...+.....+-...... ..
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~-~--~~~i~---~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~ 189 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQ-D--DAELA---TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR 189 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHH-H--HHHHH---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhh-h--HHHHH---hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHh
Confidence 477888889999999999999998855 1 11222 456666666666889999999999988865432110 01
Q ss_pred hHHHHHHHHHHcCC-chhHHHHHHHHHHHHhhhhhc--C-CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 340 APQILTALCDRLLD-FDENVRKQVVAVICDVACHAL--N-SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 340 ~~~l~~~l~~rL~D-~DekVR~aaV~~i~~la~~~l--~-~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
...++..|...|.+ .|..||..|+.++..++...- . .+....+..|.+.+++....||..|+..|+++-..
T Consensus 190 ~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 23577777777764 489999999999998775321 0 11123567888999999999999999999998765
No 52
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.83 E-value=0.32 Score=58.16 Aligned_cols=150 Identities=14% Similarity=0.163 Sum_probs=104.2
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChh-hhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC--
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA-- 338 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~-~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~-- 338 (1115)
+++|.|-.-|.+++..++..|..++|.+.+..+..-. -........++.=..+.++.||...+-...+|...++...
T Consensus 293 g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~ 372 (529)
T 3tpo_A 293 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 372 (529)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4667777778899999999999999999876421100 0001112222333356788999998888888765444210
Q ss_pred -ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-cC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 339 -DAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 339 -~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~-l~----~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
....+++.|...|.+.+.+||.+|+.+++.++... .+ .+....+..|.+.+..+...|+..|+.+|.++.+.+
T Consensus 373 v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 373 VVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 01236678888899999999999999999887532 11 122234667788889999999999999999988754
No 53
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.78 E-value=0.026 Score=62.72 Aligned_cols=145 Identities=10% Similarity=0.096 Sum_probs=105.3
Q ss_pred hhhhhhc-cccCCchHHHHHHHHHHHHhhcCCCC--C-hh--hhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCC
Q 001247 263 VVPYLTG-ELLTDQLDTRLKAVGLVGDLFAVPGS--A-NN--EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS 336 (1115)
Q Consensus 263 Vip~Le~-eL~se~~~~R~~At~~lg~m~s~~~~--~-~~--~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~ 336 (1115)
.+|.|-. -|.++++.+|..|...||.+.+.... + +. ..-|.+++-+ . .|.++.||...+-+...+..+++.
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL-~--~~~~~~v~~~A~~ALsnl~~~~~~ 158 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL-D--RDACDTVRVKALFAISCLVREQEA 158 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-H--HCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH-c--cCCCHHHHHHHHHHHHHHHcCCcH
Confidence 3444444 67889999999999999999875321 0 11 1335665443 2 256789999999999988776653
Q ss_pred CC---ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 001247 337 RA---DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 337 ~~---~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~----v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
.. .....++.|...|.++|.+||..|+-+++.++....+. +....+..|.+.++.+...||..|+.+|+++-.
T Consensus 159 ~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 10 01135678888889999999999999999987653321 233467788899999999999999999999876
Q ss_pred H
Q 001247 410 G 410 (1115)
Q Consensus 410 ~ 410 (1115)
.
T Consensus 239 ~ 239 (296)
T 1xqr_A 239 D 239 (296)
T ss_dssp T
T ss_pred C
Confidence 4
No 54
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.37 Score=52.48 Aligned_cols=147 Identities=12% Similarity=0.106 Sum_probs=105.4
Q ss_pred hhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCCh-----hhhc-HHHHHHHHhc-ccCCChhHHHHHHHHhHHHHhc
Q 001247 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN-----NEQF-HSVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLT 333 (1115)
Q Consensus 261 ~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~-----~~~~-~~~~~~fL~R-~~D~s~~VR~~~v~~~~~il~~ 333 (1115)
....|.+..-+...|..+-..|.+++..++..-+... ...+ ..+....+.| ..|..+.+|...++++-.+...
T Consensus 54 ~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~ 133 (278)
T 4ffb_C 54 WRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133 (278)
T ss_dssp TSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 3445556656667899999999999998875433221 1111 3334445556 7899999999998888776543
Q ss_pred CCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhh-hcCCCCHH-----HHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 334 DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACH-ALNSIPVE-----TVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 334 ~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~-~l~~v~~~-----~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
... ...+.+.+..-+..-..+||.+++..+..+... ....++.. ++..+..-+-|....||..|+..++.+
T Consensus 134 ~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 134 DTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp SSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred cCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 221 246778888888888999999999999987653 45566643 345667778899999999999999999
Q ss_pred HHH
Q 001247 408 FRG 410 (1115)
Q Consensus 408 y~~ 410 (1115)
|+.
T Consensus 211 y~~ 213 (278)
T 4ffb_C 211 YKV 213 (278)
T ss_dssp HTC
T ss_pred HHH
Confidence 985
No 55
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=95.12 E-value=6 Score=49.70 Aligned_cols=187 Identities=11% Similarity=0.095 Sum_probs=118.8
Q ss_pred hhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhh------hhhhhhhccccCCchHHHHHHHHHHHHhhc
Q 001247 218 GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILS------GVVPYLTGELLTDQLDTRLKAVGLVGDLFA 291 (1115)
Q Consensus 218 ~~l~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~------~Vip~Le~eL~se~~~~R~~At~~lg~m~s 291 (1115)
+..+..+..|+++-+...+ .+..+.+...+..|+...|+.=. +++|.|-.-+.+++..++..|+..+|.+-+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~--~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~ 319 (810)
T 3now_A 242 ARFTDQIDEYIKDKLLAPD--MESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASS 319 (810)
T ss_dssp HHHHHHHHHHHHHHHSSCC--HHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCC--hHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Confidence 3444555566666443321 12234566677777777777644 567888888899999999999999999776
Q ss_pred CCC-CChhhhc-HHHHHHHHhcccCCChhHHHHHHHHhHHHHhc---CCC-C--CC--hHHHHHHHHHHcCCc--hhHHH
Q 001247 292 VPG-SANNEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT---DPS-R--AD--APQILTALCDRLLDF--DENVR 359 (1115)
Q Consensus 292 ~~~-~~~~~~~-~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~---~~~-~--~~--~~~l~~~l~~rL~D~--DekVR 359 (1115)
.+. .++...+ -+.+..+++ ..++.||....-..-.+-.. ++. . .. ..++++.+.+.|..+ |..||
T Consensus 320 ~~~~R~~I~~~gv~~L~~Ll~---s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~ 396 (810)
T 3now_A 320 KKDKAKALCEQGVDILKRLYH---SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIR 396 (810)
T ss_dssp SHHHHHTTHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHH
T ss_pred CcHHHHHHHHcCcHHHHHHHc---CCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHH
Confidence 642 1222222 223333333 34467777333333332211 222 1 11 246788899999888 99999
Q ss_pred HHHHHHHHHhhhhh---cCCC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 001247 360 KQVVAVICDVACHA---LNSI-PVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 360 ~aaV~~i~~la~~~---l~~v-~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
..||.+++.++... -..+ ....+..|.+.++.....|...|...|+++=.
T Consensus 397 ~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~ 450 (810)
T 3now_A 397 RWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN 450 (810)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcC
Confidence 99999999876422 1122 34566677777777888999999999999855
No 56
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.72 E-value=14 Score=47.17 Aligned_cols=161 Identities=11% Similarity=0.099 Sum_probs=107.7
Q ss_pred HHHHHHHHHhhCc-hhhhhhhhhhhccc----cCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhH
Q 001247 245 YHEVIYDVYRCSP-QILSGVVPYLTGEL----LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 319 (1115)
Q Consensus 245 ~h~li~el~~~~P-~lL~~Vip~Le~eL----~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~V 319 (1115)
+.+++..+....| +++..+++.++..| .+.+-..|-.|.-.+|.+..+........-+.+.. .+....+-++.|
T Consensus 427 ~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~-~l~~l~~~~~~v 505 (963)
T 2x19_B 427 ISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIG-LIPRISISNVQL 505 (963)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH-HGGGSCCCSHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHH-HHHhCCCCcHHH
Confidence 4556777777766 56666778887777 66788899999999998776543222222255666 455666668999
Q ss_pred HHHHHHHhHHHH---hcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCC-C--HHHHHHHHHhhc--c
Q 001247 320 RMSVLEHVKSCL---LTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI-P--VETVKLVAERLR--D 391 (1115)
Q Consensus 320 R~~~v~~~~~il---~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v-~--~~~l~~l~eR~r--D 391 (1115)
|...+...+++- ..|+. ....+++.+...+.| .+||..|+.++..++...-..+ | ++++..+..-+. +
T Consensus 506 r~~~~~~l~~~~~~l~~~~~--~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~ 581 (963)
T 2x19_B 506 ADTVMFTIGALSEWLADHPV--MINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQI 581 (963)
T ss_dssp HHHHHHHHHHTHHHHHHCHH--HHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCC
Confidence 988888877643 33332 223566777777766 7899999999998875332222 2 345555554443 2
Q ss_pred CChhHHHHHHHHHHHHHHH
Q 001247 392 KSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 392 Kk~~VR~~Ai~~L~~ly~~ 410 (1115)
=+..+|..+++++|.+-..
T Consensus 582 ~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 582 HKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp SCHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHhc
Confidence 3568899999999988753
No 57
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.54 E-value=0.69 Score=58.62 Aligned_cols=146 Identities=14% Similarity=0.076 Sum_probs=103.4
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcc-cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHc
Q 001247 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRL-TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL 351 (1115)
Q Consensus 273 se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~-~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL 351 (1115)
.++..+|..|+-.+|-.+++.|. +...+..|... .|.+..||...|-..+-|+..+|+ .+.+.+...+
T Consensus 553 ~~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e-----~v~rlv~~L~ 621 (963)
T 4ady_A 553 SDESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT-----TVPRIVQLLS 621 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS-----SHHHHTTTGG
T ss_pred CCCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH-----HHHHHHHHHH
Confidence 57888999999999988888773 33444444442 478889999999999988877663 2334444455
Q ss_pred CCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHH
Q 001247 352 LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGK 431 (1115)
Q Consensus 352 ~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~ 431 (1115)
.+.|..||..|.-+++-+...+. ..+.+..|..-..|....||+.|+..||.+-... +.....++..+-..
T Consensus 622 ~~~d~~VR~gAalALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt------nna~~~rva~~l~~ 692 (963)
T 4ady_A 622 KSHNAHVRCGTAFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ------TEKLNPQVADINKN 692 (963)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC------CTTTCTTHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC------ccccchHHHHHHHH
Confidence 68999999999998886554333 3667778888889999999999999999886542 12222355555555
Q ss_pred Hhhhhhc
Q 001247 432 ILRCLYD 438 (1115)
Q Consensus 432 il~~~y~ 438 (1115)
+...|+.
T Consensus 693 L~~~~~d 699 (963)
T 4ady_A 693 FLSVITN 699 (963)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 5554443
No 58
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.49 E-value=10 Score=44.76 Aligned_cols=148 Identities=11% Similarity=0.082 Sum_probs=91.5
Q ss_pred hhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChh-hhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCC
Q 001247 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1115)
Q Consensus 261 ~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~-~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~ 339 (1115)
.+++|.|-.-|.+.+..+|..|+.+++.+.+....... -........++.-..+.+..||.+.+.+..++...... +.
T Consensus 315 ~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~-~~ 393 (510)
T 3ul1_B 315 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-EQ 393 (510)
T ss_dssp TTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH-HH
T ss_pred ccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH-HH
Confidence 35788888889999999999999999999876421110 00112344455555677888998888887776543211 00
Q ss_pred h-----HHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHH----------HHHHHHHhhccCChhHHHHHHHHH
Q 001247 340 A-----PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE----------TVKLVAERLRDKSVLVKRYTMERL 404 (1115)
Q Consensus 340 ~-----~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~----------~l~~l~eR~rDKk~~VR~~Ai~~L 404 (1115)
. ..+++.|...|..+|.+|+..++.++..+....-..-..+ -+..+-+..-..+..|++.|...+
T Consensus 394 ~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii 473 (510)
T 3ul1_B 394 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473 (510)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0 1345778888888899999888888776643221111111 122333444556667777777766
Q ss_pred HHHHH
Q 001247 405 ADIFR 409 (1115)
Q Consensus 405 ~~ly~ 409 (1115)
-+.|.
T Consensus 474 e~yf~ 478 (510)
T 3ul1_B 474 EKYFS 478 (510)
T ss_dssp HHHCC
T ss_pred HHHCC
Confidence 66553
No 59
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=94.41 E-value=2.8 Score=44.39 Aligned_cols=136 Identities=21% Similarity=0.060 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhC--CcC
Q 001247 565 FDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS--PLL 642 (1115)
Q Consensus 565 ~~~~~~a~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~--P~l 642 (1115)
|..+.++..++++ .++....+..-..+-...+.-..+.-+..|...+ .++ +-.....|..+|.+|+... |++
T Consensus 113 y~Kl~~aL~dlik--~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl-~Sk---d~~vK~agl~~L~eia~~S~D~~i 186 (265)
T 3b2a_A 113 FLKAAKTLVSLLE--SPDDMMRIETIDVLSKLQPLEDSKLVRTYINELV-VSP---DLYTKVAGFCLFLNMLNSSADSGH 186 (265)
T ss_dssp HHHHHHHHHHHTT--SCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHH-TCS---SHHHHHHHHHHHHHHGGGCSSCCC
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHhCcCCcccchHHHHHHHHHHH-hCC---ChhHHHHHHHHHHHhhcccCCHHH
Confidence 4444444455544 2222344445555666666666777777777765 443 3334567899999999865 899
Q ss_pred ccccHHHHHHHHhhccccchHhHHHHHHHhhc-chHhhhhcccchHHHHHHHHh-hcCChHHHHHH
Q 001247 643 LGGTEEELVNLLKEENEIIKEGILHVLAKAGG-TIREQLAATSSSVDLLLERLC-LEGSRRQAKYA 706 (1115)
Q Consensus 643 f~~~~~~L~~~l~~~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~~l~~~L~~la-~~Gtp~~AK~A 706 (1115)
+++-.+++.++|..+|+...+.+|.+|-.+.+ .++++.-..-......-+++| ++|.|.-+--|
T Consensus 187 ~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka 252 (265)
T 3b2a_A 187 LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKA 252 (265)
T ss_dssp GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 99999999999999998888999999886653 344332221223455667899 99999766555
No 60
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=94.13 E-value=1.8 Score=50.89 Aligned_cols=145 Identities=10% Similarity=0.064 Sum_probs=98.2
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC---
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA--- 338 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~--- 338 (1115)
+++|.|-.-|.+++..+|..|+.+++.+-...+.. .........++.-..+.++.||...+....++-..+++..
T Consensus 227 g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 304 (529)
T 1jdh_A 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 304 (529)
T ss_dssp THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 57888888888889999999999999998764321 1234555556666678899999998888877644332100
Q ss_pred ChHHHHHHHHHHcCCc--hhHHHHHHHHHHHHhhhhhcCC-------CCHHHHHHHHHhhccCC-hhHHHHHHHHHHHHH
Q 001247 339 DAPQILTALCDRLLDF--DENVRKQVVAVICDVACHALNS-------IPVETVKLVAERLRDKS-VLVKRYTMERLADIF 408 (1115)
Q Consensus 339 ~~~~l~~~l~~rL~D~--DekVR~aaV~~i~~la~~~l~~-------v~~~~l~~l~eR~rDKk-~~VR~~Ai~~L~~ly 408 (1115)
.....++.|.+.|.+. ++.||..++.+++.++...... +....+..+...+++.+ ..||++|+..|+++-
T Consensus 305 ~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~ 384 (529)
T 1jdh_A 305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 384 (529)
T ss_dssp HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHh
Confidence 0012445666666543 3799999999999886543220 11123556777888877 599999998877764
No 61
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=94.01 E-value=6 Score=46.98 Aligned_cols=147 Identities=11% Similarity=0.084 Sum_probs=94.1
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChh-hhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~-~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~ 340 (1115)
+++|.|-.-|.+.+..+|..|..+|+.+.++...... -....+...++.-..+.+..||.+.+.+..++...... +..
T Consensus 335 g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~-~~~ 413 (529)
T 3tpo_A 335 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV-EQI 413 (529)
T ss_dssp TGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH-HHH
Confidence 4667777778899999999999999999886431110 01112444555556678899999988888876553211 001
Q ss_pred -----HHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHH----------HHHHHHhhccCChhHHHHHHHHHH
Q 001247 341 -----PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVET----------VKLVAERLRDKSVLVKRYTMERLA 405 (1115)
Q Consensus 341 -----~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~----------l~~l~eR~rDKk~~VR~~Ai~~L~ 405 (1115)
..+++.|...|..+|.+|+..++.++..+....-..-..+- +..+-+..-..+..|++.|...+-
T Consensus 414 ~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie 493 (529)
T 3tpo_A 414 VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 493 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 13467889999999999999999988876542211111111 223333344566777777777766
Q ss_pred HHHH
Q 001247 406 DIFR 409 (1115)
Q Consensus 406 ~ly~ 409 (1115)
+.|.
T Consensus 494 ~yf~ 497 (529)
T 3tpo_A 494 KYFS 497 (529)
T ss_dssp HHC-
T ss_pred HHCC
Confidence 6654
No 62
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=93.67 E-value=2.6 Score=51.45 Aligned_cols=145 Identities=10% Similarity=0.062 Sum_probs=99.7
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC---
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA--- 338 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~--- 338 (1115)
+++|.|-.-|...+..+|..|+.+|+.+...... . ..........+.-..+.++.||...+....++-..++...
T Consensus 224 g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~-~-~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v 301 (644)
T 2z6h_A 224 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-Q-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 301 (644)
T ss_dssp THHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT-C-CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh-h-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4678888888888999999999999999765432 1 2234566666666678889999988888877544332100
Q ss_pred ChHHHHHHHHHHcCCch--hHHHHHHHHHHHHhhhhhcC-------CCCHHHHHHHHHhhccCC-hhHHHHHHHHHHHHH
Q 001247 339 DAPQILTALCDRLLDFD--ENVRKQVVAVICDVACHALN-------SIPVETVKLVAERLRDKS-VLVKRYTMERLADIF 408 (1115)
Q Consensus 339 ~~~~l~~~l~~rL~D~D--ekVR~aaV~~i~~la~~~l~-------~v~~~~l~~l~eR~rDKk-~~VR~~Ai~~L~~ly 408 (1115)
.....++.|...|.+.+ +.||..++.+++.++..... .+....+..+.+.+++.+ ..||++|...|+++-
T Consensus 302 ~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa 381 (644)
T 2z6h_A 302 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 381 (644)
T ss_dssp HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHc
Confidence 00124566666676643 79999999999988653221 011124567777788765 699999998888774
No 63
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=93.52 E-value=0.49 Score=51.24 Aligned_cols=131 Identities=20% Similarity=0.208 Sum_probs=102.6
Q ss_pred HHHHHHHhcccCCChhHHHHHHHHhHHHHhc-CCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHH
Q 001247 303 SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVET 381 (1115)
Q Consensus 303 ~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~-~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~ 381 (1115)
+--.+||+..+-.+.+.++..+..+..++.+ +|+ ...++++.+..-..|++-.||.-.+.-+.+....... +-...
T Consensus 15 ~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~--ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~-l~~~~ 91 (257)
T 3gs3_A 15 AKVVDWCNELVIASPSTKCELLAKVQETVLGSCAE--LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE-LLPHV 91 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGG--GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHH
T ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHh--HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3345677777666668999999999996665 453 5678999988888999999999999999887655543 44566
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCC-------cchhhcccchHHHhhhh
Q 001247 382 VKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS-------INQNEFEWIPGKILRCL 436 (1115)
Q Consensus 382 l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~-------~~~~~~~wIP~~il~~~ 436 (1115)
+.++..-++|..+.|-|.||.+.+.+|+..+.....++ ..|+.+..+-+.|++.+
T Consensus 92 l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~ 153 (257)
T 3gs3_A 92 INVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMI 153 (257)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999999999999999998876553332 34677888888888874
No 64
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.44 E-value=1.3 Score=57.04 Aligned_cols=160 Identities=12% Similarity=0.086 Sum_probs=107.6
Q ss_pred HHHHHHHHHhhCc-hhhhhhhhhhhccccC-----CchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhccc--CCC
Q 001247 245 YHEVIYDVYRCSP-QILSGVVPYLTGELLT-----DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT--DRI 316 (1115)
Q Consensus 245 ~h~li~el~~~~P-~lL~~Vip~Le~eL~s-----e~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~--D~s 316 (1115)
+.+++..+....| +++..+++.++..|.+ .+-..|-.|+-.+|.+..+........-+.++. .+.... |..
T Consensus 441 ~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~ 519 (971)
T 2x1g_F 441 ISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLN 519 (971)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccC
Confidence 5678888888888 6777788898888875 677899999999998755433222223366666 444444 789
Q ss_pred hhHHHHHHHHhHHHHh---cCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCC---HHHHHHHHHhhc
Q 001247 317 VAVRMSVLEHVKSCLL---TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP---VETVKLVAERLR 390 (1115)
Q Consensus 317 ~~VR~~~v~~~~~il~---~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~---~~~l~~l~eR~r 390 (1115)
+.||...+...+.+-. .+| .-...+++.|...+ | .+|+.+|+.++..+....-..+. +.++..+.+-+.
T Consensus 520 ~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~ 594 (971)
T 2x1g_F 520 VKLLGTALETMGSYCNWLMENP--AYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLN 594 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence 9999999888876432 334 23567888888888 5 78999999999988743222121 234444444444
Q ss_pred c--CChhHHHHHHHHHHHHHHH
Q 001247 391 D--KSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 391 D--Kk~~VR~~Ai~~L~~ly~~ 410 (1115)
. =+..+|..+++++|.+...
T Consensus 595 ~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 595 TGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp STTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHHh
Confidence 3 2468899999999998864
No 65
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.37 E-value=0.28 Score=55.72 Aligned_cols=117 Identities=12% Similarity=0.030 Sum_probs=94.8
Q ss_pred HHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHH
Q 001247 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1115)
Q Consensus 246 h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~ 325 (1115)
|--+.++++..+++ .=|+..|...+++.|+-+|-.|.+++|++... .+. +++....-.-..|++|.||.+.+=
T Consensus 89 YLyl~~~~~~~~e~-iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m~---~~l~~~lk~~L~d~~pyVRk~A~l 161 (355)
T 3tjz_B 89 YLTIKEMSCIAEDV-IIVTSSLTKDMTGKEDSYRGPAVRALCQITDS---TML---QAIERYMKQAIVDKVPSVSSSALV 161 (355)
T ss_dssp HHHHHHHTTTSSCG-GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TTH---HHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHhCCCHHHH-HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HHH---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44555666664454 48999999999999999999999999998764 233 567777888889999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001247 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1115)
Q Consensus 326 ~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1115)
++.+++..+|+ .....++.+.+.+.|.+.-|=..|+.++.++..
T Consensus 162 ~~~kL~~~~pe--~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 162 SSLHLLKCSFD--VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHHTTTCHH--HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCHH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 99998877664 344566788889999999999999998888764
No 66
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=93.12 E-value=0.25 Score=56.56 Aligned_cols=131 Identities=15% Similarity=0.210 Sum_probs=100.7
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHhHHHHh-cCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHH
Q 001247 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1115)
Q Consensus 302 ~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~-~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~ 380 (1115)
.+---+||+-....+.+.++..+..+..++. .+|+ ...++++.+..--.|++-.||.-++..+.+......+.+ ..
T Consensus 24 ~~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps--Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-~~ 100 (386)
T 3o2t_A 24 SERVVDLLNQAALITNDSKITVLKQVQELIINKDPT--LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-LK 100 (386)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG--GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-HH
T ss_pred HHHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3444567777766666899999999999766 4564 456899999999999999999999999998776666654 66
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCC-------cchhhcccchHHHhhh
Q 001247 381 TVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS-------INQNEFEWIPGKILRC 435 (1115)
Q Consensus 381 ~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~-------~~~~~~~wIP~~il~~ 435 (1115)
++.+|...++|..+.|-|.||.+.+.+|...+.-...++ ..|+.+..|-+.|++.
T Consensus 101 ~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~ 162 (386)
T 3o2t_A 101 LIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILL 162 (386)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999999999999998654332111 2356666666777664
No 67
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.05 E-value=9 Score=49.07 Aligned_cols=126 Identities=10% Similarity=0.053 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhCch-hhhhhhhhhhcccc------CCchHHHHHHHHHHHHhhcC-CCCC-hhh------hcHHHHHH-H
Q 001247 245 YHEVIYDVYRCSPQ-ILSGVVPYLTGELL------TDQLDTRLKAVGLVGDLFAV-PGSA-NNE------QFHSVFSE-F 308 (1115)
Q Consensus 245 ~h~li~el~~~~P~-lL~~Vip~Le~eL~------se~~~~R~~At~~lg~m~s~-~~~~-~~~------~~~~~~~~-f 308 (1115)
+-+++..|-...++ ++..++|.+..-|. +++-..|-.|...+|-+... .+.. ... .....+.. -
T Consensus 381 a~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v 460 (960)
T 1wa5_C 381 CTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI 460 (960)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh
Confidence 56788888888875 44468888887777 67788999999999988532 1111 111 22222322 2
Q ss_pred HhcccCC---ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001247 309 LKRLTDR---IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1115)
Q Consensus 309 L~R~~D~---s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1115)
+.-..|. .|-||...+..++.+-..-+ ......+++.+...|.|++..||.+|+.++..+..
T Consensus 461 ~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 461 APDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 3334666 89999999999887543211 12245778888899999999999999999998765
No 68
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=91.69 E-value=24 Score=45.16 Aligned_cols=130 Identities=9% Similarity=0.102 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhccc---CCChhHHHHHHHHhHHHHhcC-----CCCC-----ChHH
Q 001247 276 LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT---DRIVAVRMSVLEHVKSCLLTD-----PSRA-----DAPQ 342 (1115)
Q Consensus 276 ~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~---D~s~~VR~~~v~~~~~il~~~-----~~~~-----~~~~ 342 (1115)
...|..|..++..+...-+......--..-...+.++. +.+...|-+.+-..+.|...- +... ....
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred cCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 46899999999888765431111111111223333321 233456767777766654211 1110 1122
Q ss_pred H-HHHHHHHcCCc---hhHHHHHHHHHHHHhhhhhcCCCCHH----HHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 001247 343 I-LTALCDRLLDF---DENVRKQVVAVICDVACHALNSIPVE----TVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 343 l-~~~l~~rL~D~---DekVR~aaV~~i~~la~~~l~~v~~~----~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
. .+.+...|.|+ ...||.+|+.+++.++.. ++.+ ++..+...+.|....||..|...|.++-.
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~----~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ----LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG----SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh----CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 2 23444556788 899999999999987753 2333 45677788899999999999999987654
No 69
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=91.68 E-value=4.3 Score=52.69 Aligned_cols=164 Identities=10% Similarity=0.045 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhCch-hhhhhhhhhhccccC--CchHHHHHHHHHHHHhhcCCCCChhhh-cHHHHHHHHhcc-----cCC
Q 001247 245 YHEVIYDVYRCSPQ-ILSGVVPYLTGELLT--DQLDTRLKAVGLVGDLFAVPGSANNEQ-FHSVFSEFLKRL-----TDR 315 (1115)
Q Consensus 245 ~h~li~el~~~~P~-lL~~Vip~Le~eL~s--e~~~~R~~At~~lg~m~s~~~~~~~~~-~~~~~~~fL~R~-----~D~ 315 (1115)
.-+++..+....|+ ++..+.+.|...+.+ .+-..|-.|.-.+|-+-+.-+...... .+.+...+++-. +|.
T Consensus 433 ~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~ 512 (1049)
T 3m1i_C 433 EREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN 512 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc
Confidence 45677777777775 455577888777753 566788899999996654322111223 366666665522 244
Q ss_pred ChhHHHHHHHHhH---HHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCC---------C--HHH
Q 001247 316 IVAVRMSVLEHVK---SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---------P--VET 381 (1115)
Q Consensus 316 s~~VR~~~v~~~~---~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v---------~--~~~ 381 (1115)
.+-||...+..++ ..+..||. -...+++.+...+.|++.+||.+|+.++..++...-..+ | ..+
T Consensus 513 ~~~v~~~~~~~lgry~~~~~~~~~--~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~i 590 (1049)
T 3m1i_C 513 KAVVASDIMYVVGQYPRFLKAHWN--FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTI 590 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHH--HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHH
Confidence 5666643333333 34455553 245788888889999999999999999998876432211 2 245
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 382 VKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 382 l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
+..+..-+.+-+..-+...++++|.+...
T Consensus 591 l~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 591 IRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 55554444444444455666666666644
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=91.18 E-value=1.4 Score=50.08 Aligned_cols=127 Identities=10% Similarity=0.059 Sum_probs=76.6
Q ss_pred ccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHH
Q 001247 271 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR 350 (1115)
Q Consensus 271 L~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~r 350 (1115)
+.++|...|...=-.+..+...++-.+. +=+.+.+=.+|.++-||...+.....|.. | +..+.+...+...
T Consensus 77 ~~s~d~~lKrLvYLyl~~~~~~~~e~iL-----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~--~m~~~l~~~lk~~ 147 (355)
T 3tjz_B 77 FQSNDPTLRRMCYLTIKEMSCIAEDVII-----VTSSLTKDMTGKEDSYRGPAVRALCQITD--S--TMLQAIERYMKQA 147 (355)
T ss_dssp GGCCCHHHHHHHHHHHHHHTTTSSCGGG-----GHHHHHHHHHSSCHHHHHHHHHHHHHHCC--T--TTHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHhCCCHHHHHH-----HHHHHHhhcCCCcHhHHHHHHHHHhcCCC--H--HHHHHHHHHHHHH
Confidence 4567777777665555444333221221 23455555677777888877777776543 2 2456777778888
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 351 LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 351 L~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
|.|.+.-||.+|+-++..+-...++.+ ...+..+.+.+.|+++.|--.|+..|..+
T Consensus 148 L~d~~pyVRk~A~l~~~kL~~~~pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei 203 (355)
T 3tjz_B 148 IVDKVPSVSSSALVSSLHLLKCSFDVV-KRWVNEAQEAASSDNIMVQYHALGLLYHV 203 (355)
T ss_dssp HTCSSHHHHHHHHHHHHHHTTTCHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 888888888877776665544443333 23456677777777777765444443333
No 71
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=91.03 E-value=2.3 Score=45.11 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=115.6
Q ss_pred hhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCCh
Q 001247 218 GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN 297 (1115)
Q Consensus 218 ~~l~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~ 297 (1115)
..|+.||....+.+..-+++ ....-+.-.++++..+ +...++....-.+++..++|..|+.++|+. .
T Consensus 33 ~~~~~~~~~~~~~~~~~~~g----f~~~~~~a~~~~~~~~--~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------ 99 (240)
T 3l9t_A 33 GSMKQYVARLEKDFSLIEHG----FKEEEQRALTDYKSND--GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------ 99 (240)
T ss_dssp -CHHHHHHHHHHHHTC---------CHHHHHHHHHHHHSC--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------
T ss_pred hHHHHHHHHHHHHHHHhhcc----cHHHHHHHHHHHHhCC--HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------
Confidence 46777887777776532221 1122334444444433 334445555555677889999999999988 3
Q ss_pred hhhcHHHHHHHHh-cccCCChhHHHHHHHHhHHHHh-cCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh-hhc
Q 001247 298 NEQFHSVFSEFLK-RLTDRIVAVRMSVLEHVKSCLL-TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HAL 374 (1115)
Q Consensus 298 ~~~~~~~~~~fL~-R~~D~s~~VR~~~v~~~~~il~-~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~-~~l 374 (1115)
..++.|..... =..|.+=.||-.+......++. .+|+ +.++.+..=+.|.+..||.+|....---+. ..+
T Consensus 100 --~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~ 172 (240)
T 3l9t_A 100 --KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF 172 (240)
T ss_dssp --TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT
T ss_pred --CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh
Confidence 22566665554 2458888999998888888886 6774 255677788899999999998876421111 234
Q ss_pred CCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 375 NSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 375 ~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
..-|..++..+....-|+..=||+---..|-.+-+.
T Consensus 173 k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 173 KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 455667888888899999999999877777665554
No 72
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=90.12 E-value=0.16 Score=60.46 Aligned_cols=150 Identities=14% Similarity=0.167 Sum_probs=104.8
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChh-hhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC--
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA-- 338 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~-~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~-- 338 (1115)
+++|.|-.-|.+++..+|..|..++|.+.+..+..-. -........++.-..+.++.||...+....+|...++...
T Consensus 274 g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~ 353 (510)
T 3ul1_B 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353 (510)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 4778888888999999999999999999876421100 0001112222333456788999998888888665443210
Q ss_pred -ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-cC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 339 -DAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 339 -~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~-l~----~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
....+++.|...+.+.|.+||.+|+.+++.++... .+ .+....+..|.+.++.+...|+..++.+|.++.+.+
T Consensus 354 v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 01246678888899999999999999999887632 11 122234667788889999999999999999998754
No 73
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=89.88 E-value=0.18 Score=54.22 Aligned_cols=91 Identities=21% Similarity=0.127 Sum_probs=61.0
Q ss_pred hhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcc-cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHH
Q 001247 267 LTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRL-TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 345 (1115)
Q Consensus 267 Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~-~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~ 345 (1115)
+..-++.++..+|..|...++ ..+|.+. .|.++.||...++.. +. +
T Consensus 151 l~~l~~D~d~~VR~~aa~~l~------------------~~ll~~ll~D~d~~VR~aaa~~l-------~~--------~ 197 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKRLP------------------EESLGLMTQDPEPEVRRIVASRL-------RG--------D 197 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHSC------------------GGGGGGSTTCSSHHHHHHHHHHC-------CG--------G
T ss_pred HHHHHcCCCHHHHHHHHHcCC------------------HHHHHHHHcCCCHHHHHHHHHhC-------CH--------H
Confidence 444456778889988877521 0233343 899999999888752 10 2
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 001247 346 ALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1115)
Q Consensus 346 ~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~ 405 (1115)
.|...+.|+|+.||.+++..+. . ..+... .|..+.||..|...||
T Consensus 198 ~L~~Ll~D~d~~VR~~aa~~l~-----------~---~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 198 DLLELLHDPDWTVRLAAVEHAS-----------L---EALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGGGGCSSHHHHHHHHHHSC-----------H---HHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHHcCCCHHHHHHHHHcCC-----------H---HHHHHc-cCCCHHHHHHHHHHhC
Confidence 3555688999999999777532 2 233444 8999999999887765
No 74
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.85 E-value=20 Score=45.61 Aligned_cols=126 Identities=12% Similarity=-0.014 Sum_probs=90.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcC
Q 001247 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1115)
Q Consensus 273 se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~ 352 (1115)
..+..+|..|+.-+|.+.-+.. +.-|.+....+ .+.++.||....-+.+-+=..+|. .++++.|...+.
T Consensus 589 d~~d~VRraAViaLGlI~~g~~----e~v~rlv~~L~---~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~ 657 (963)
T 4ady_A 589 DSNDDVRRAAVIALGFVLLRDY----TTVPRIVQLLS---KSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTK 657 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSC----SSHHHHTTTGG---GCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhhccCCH----HHHHHHHHHHH---hcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHcc
Confidence 4567899999999998644322 12233333222 366799999998887754444452 578889999999
Q ss_pred CchhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCC--hhHHHHHHHHHHHHHH
Q 001247 353 DFDENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKS--VLVKRYTMERLADIFR 409 (1115)
Q Consensus 353 D~DekVR~aaV~~i~~la~~~l~~v~~---~~l~~l~eR~rDKk--~~VR~~Ai~~L~~ly~ 409 (1115)
|+|+.||..|+.+.+-+..-.-+..+. .+++.+..-+.||+ ..+|--|.-..|-+..
T Consensus 658 D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 658 DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 999999999999999887765555333 46778888888866 4577777777777764
No 75
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=88.57 E-value=68 Score=41.42 Aligned_cols=124 Identities=10% Similarity=0.063 Sum_probs=80.9
Q ss_pred HHHHHHHhhC-chhhhhhhhhhhccccC--CchHHHHHHHHHHHHhhcCCCCC-hhhhcHHHHHHHHhccc-----CCCh
Q 001247 247 EVIYDVYRCS-PQILSGVVPYLTGELLT--DQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLT-----DRIV 317 (1115)
Q Consensus 247 ~li~el~~~~-P~lL~~Vip~Le~eL~s--e~~~~R~~At~~lg~m~s~~~~~-~~~~~~~~~~~fL~R~~-----D~s~ 317 (1115)
+.+.-+.... ++++...+|.+...+.. .+=..|-.|+=.+|-+..+...+ ...--|.+....++-.. |..+
T Consensus 435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~ 514 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKA 514 (1023)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchH
Confidence 5554454443 45666677777776664 56888999999999888766433 22223556665554433 4445
Q ss_pred hHHHHH---HHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhh
Q 001247 318 AVRMSV---LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACH 372 (1115)
Q Consensus 318 ~VR~~~---v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~ 372 (1115)
.||-.. +......+..||.. -..+++.|-..+.|+.++|..+||.++..++..
T Consensus 515 ~v~~t~~~~lGry~~wl~~~~~~--L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 515 VVASDIMYVVGQYPRFLKAHWNF--LRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHHHHHHHTCHHHHHHCHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 555222 23333455566642 457888899999999999999999999988753
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=88.17 E-value=7.9 Score=41.06 Aligned_cols=171 Identities=12% Similarity=0.094 Sum_probs=127.7
Q ss_pred HHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCC-CCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhH
Q 001247 250 YDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVK 328 (1115)
Q Consensus 250 ~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~-~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~ 328 (1115)
.|+-+.+++.+.-++..| ..+|..++..|...+++|+..- +.-=...+..++..+++=..+++..|=+..+++.+
T Consensus 25 ~ela~~~e~~l~~L~~LL----~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~ 100 (265)
T 3b2a_A 25 VSLALEDKRALFLILELA----GEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALG 100 (265)
T ss_dssp HHHHHHCHHHHHHHHHHT----TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHH
T ss_pred HHHHHhchhHHHHHHHHH----hccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 345566777666655555 5689999999999999999873 32224566778888888888999999999999999
Q ss_pred HHHhcCCCCC-ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001247 329 SCLLTDPSRA-DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 329 ~il~~~~~~~-~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1115)
.+|.+.|-+. .-.-+.+++..-....++-.|..+....+.+ ........+..-+...+.-|+..|...|+..|-++
T Consensus 101 ~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl---kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 101 YLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL---QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp HHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC---CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC---CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9998877432 1235778999999999999999999998876 55556677888888888999999999999888776
Q ss_pred HHHhhhhccCCCcchhhcccchHH
Q 001247 408 FRGCCLRNFNGSINQNEFEWIPGK 431 (1115)
Q Consensus 408 y~~~~~~~~~~~~~~~~~~wIP~~ 431 (1115)
=... ++......-|..||.-
T Consensus 178 a~~S----~D~~i~~~I~~eI~el 197 (265)
T 3b2a_A 178 LNSS----ADSGHLTLILDEIPSL 197 (265)
T ss_dssp GGGC----SSCCCGGGTTTTHHHH
T ss_pred hccc----CCHHHHHHHHHHHHHH
Confidence 4421 2222333456666653
No 77
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=87.58 E-value=67 Score=40.25 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=86.6
Q ss_pred chHHHHHHHHHHHHhhcCCCCChh-hhcHHHHHHHHh-cc--cCCChhHHHHHHHHhHHHHhcCCCC-C---ChHHHHHH
Q 001247 275 QLDTRLKAVGLVGDLFAVPGSANN-EQFHSVFSEFLK-RL--TDRIVAVRMSVLEHVKSCLLTDPSR-A---DAPQILTA 346 (1115)
Q Consensus 275 ~~~~R~~At~~lg~m~s~~~~~~~-~~~~~~~~~fL~-R~--~D~s~~VR~~~v~~~~~il~~~~~~-~---~~~~l~~~ 346 (1115)
.+..|..|+-++.+++-+-+++-. +.|...+..|++ |+ .|.+..||..|.-. .|+.--++. . .....++.
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt--~i~~g~~~~~~~~~~~~G~v~~ 294 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAIT--ALLNGPLDVGNQVVAREGILQM 294 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH--HHHSSSHHHHHHHHHTTTHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHH--HHhcCCHHHHHHHHhccchHHH
Confidence 568999999999999987654322 344555555542 22 44455677766544 334322210 0 01145577
Q ss_pred HHHHcCCchhHHHHHHHHHHHHhhhh--hcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 347 LCDRLLDFDENVRKQVVAVICDVACH--ALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 347 l~~rL~D~DekVR~aaV~~i~~la~~--~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
|...+.-.|+.|+.+|+.++...+.. .-+.|-..-...+......+...||..|+..|++++..
T Consensus 295 li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~ 360 (810)
T 3now_A 295 ILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSY 360 (810)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 77778788999999999999986542 12233222235566777788889999999999999764
No 78
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=87.20 E-value=1.1 Score=49.44 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=94.0
Q ss_pred CchHHHHHHHHHHHHhhcCCCCChhhhc--HHHHHHHHh-cccCCChhHHHHHHHHhHHHHhcCCCCCC---hHHHHHHH
Q 001247 274 DQLDTRLKAVGLVGDLFAVPGSANNEQF--HSVFSEFLK-RLTDRIVAVRMSVLEHVKSCLLTDPSRAD---APQILTAL 347 (1115)
Q Consensus 274 e~~~~R~~At~~lg~m~s~~~~~~~~~~--~~~~~~fL~-R~~D~s~~VR~~~v~~~~~il~~~~~~~~---~~~l~~~l 347 (1115)
.+.+.|..|...|..+....+ .+... -..|..++. =....++.||...+...+.|..++|.... ....++.|
T Consensus 52 ~~~e~k~~Al~~L~~lv~~~d--na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~L 129 (296)
T 1xqr_A 52 ADQQEREGALELLADLCENMD--NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 129 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhChh--hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence 455789999999998887542 11111 123445555 44567899999999999998887763100 01344666
Q ss_pred HHHcC-CchhHHHHHHHHHHHHhhhhhcC---CC-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 348 CDRLL-DFDENVRKQVVAVICDVACHALN---SI-PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 348 ~~rL~-D~DekVR~aaV~~i~~la~~~l~---~v-~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
...|. |++..||..|+-+++.++..... .+ ....+..|..-+++....||++|...|+.+...
T Consensus 130 l~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 66666 67899999999999988753211 11 123566777888889999999999999999875
No 79
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=86.12 E-value=13 Score=46.30 Aligned_cols=147 Identities=13% Similarity=0.178 Sum_probs=99.6
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCC--Chhhhc--HHHHHHHHhcccCCChhHHHHHHHHhHHHHhc-CCC
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS--ANNEQF--HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-DPS 336 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~--~~~~~~--~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~-~~~ 336 (1115)
+|+|.|-..|.+++...|..|++.++.|-..+.. .++++- |.+- ..|....+....+|.....+..+++.+ +|.
T Consensus 457 GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL-~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 457 ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIIL-EYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHH-HHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH-HHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 5999999999999999999999999999655421 123221 2222 223333333335899999999998854 332
Q ss_pred ----CCChHHHHHHHHHHcC-Cchh-------------HHHHHHHHHHHHhhhhh--------cCCCC-HHHHHHHHHhh
Q 001247 337 ----RADAPQILTALCDRLL-DFDE-------------NVRKQVVAVICDVACHA--------LNSIP-VETVKLVAERL 389 (1115)
Q Consensus 337 ----~~~~~~l~~~l~~rL~-D~De-------------kVR~aaV~~i~~la~~~--------l~~v~-~~~l~~l~eR~ 389 (1115)
+....+.++.|..-|. |++. .-+..|..+++-+|... -..+. ...+..+-+.+
T Consensus 536 ~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL 615 (778)
T 3opb_A 536 LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLM 615 (778)
T ss_dssp HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGG
T ss_pred HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHH
Confidence 1112367888887777 2332 33788999988887642 11233 24567888999
Q ss_pred ccCChhHHHHHHHHHHHHHH
Q 001247 390 RDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 390 rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
.+-+..||+.|...++++-.
T Consensus 616 ~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 616 LDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp GCSSHHHHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999875
No 80
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=83.05 E-value=1.5 Score=47.02 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=12.2
Q ss_pred HHhcccCCChhHHHHHHHH
Q 001247 308 FLKRLTDRIVAVRMSVLEH 326 (1115)
Q Consensus 308 fL~R~~D~s~~VR~~~v~~ 326 (1115)
+..-.+|.++.||...+..
T Consensus 103 L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 103 LSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHh
Confidence 4444567777777776664
No 81
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=78.46 E-value=46 Score=42.62 Aligned_cols=220 Identities=12% Similarity=0.207 Sum_probs=145.8
Q ss_pred cccccHHHHHHHHHhhcCCCch-HHHHHHHHHHHHh--hhhhhHHHHHHHHHhhc--CCCCCCCCcchHHHHHHHHHhh-
Q 001247 182 SEDIQEDLLVILLSALGRNKND-TARRLAMNVIEQC--AGKLEAGIKQFLVSSMS--GDSRPGHSHIDYHEVIYDVYRC- 255 (1115)
Q Consensus 182 ~~~i~~~~ld~il~~~~~~~~~-~a~~la~~v~~~~--~~~l~~~i~~~~~~~l~--~~~~~~~~~~~~h~li~el~~~- 255 (1115)
...++..+++.+...+...++. .|-..-..+|+.. ....+||+-.++..++. +|+.. .-...+..-+..|.+.
T Consensus 48 ~~~~~~~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~-~v~~aa~~~~~~~~~~~ 126 (986)
T 2iw3_A 48 EHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDK-EIQSVASETLISIVNAV 126 (986)
T ss_dssp SSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHS
T ss_pred ccccchhHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHhC
Confidence 3457888888888877654433 3344444555333 33678998877776653 33221 1111234445555554
Q ss_pred CchhhhhhhhhhhccccCC-chHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHh--
Q 001247 256 SPQILSGVVPYLTGELLTD-QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-- 332 (1115)
Q Consensus 256 ~P~lL~~Vip~Le~eL~se-~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~-- 332 (1115)
.|.-+..++|.|...|.+. .=+.+..|..++++|-..-...++...|++.-..-....|..++|-.+-.+....+-.
T Consensus 127 ~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~ 206 (986)
T 2iw3_A 127 NPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV 206 (986)
T ss_dssp CGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC
Confidence 5667888999999999866 4789999999999999643457888999999999999999999999876666555432
Q ss_pred cCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhc-CCCCHHHHH---HHHHh-hccCChhHHHHHHHHHHHH
Q 001247 333 TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL-NSIPVETVK---LVAER-LRDKSVLVKRYTMERLADI 407 (1115)
Q Consensus 333 ~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l-~~v~~~~l~---~l~eR-~rDKk~~VR~~Ai~~L~~l 407 (1115)
.|. ++.-.++.|.+++.+|++ |- ++|-.++...| ..|....|. =+..| ++++...+.+.+.....++
T Consensus 207 ~n~---d~~~~~~~~~~~~~~p~~-~~----~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~ 278 (986)
T 2iw3_A 207 DNK---DIERFIPSLIQCIADPTE-VP----ETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNM 278 (986)
T ss_dssp CCT---TTGGGHHHHHHHHHCTTH-HH----HHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred CCc---chhhhHHHHHHHhcChhh-hH----HHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcch
Confidence 233 345678899999999966 43 44445555443 456555433 33344 3566777777776666666
Q ss_pred HHH
Q 001247 408 FRG 410 (1115)
Q Consensus 408 y~~ 410 (1115)
-+-
T Consensus 279 ~~l 281 (986)
T 2iw3_A 279 CKL 281 (986)
T ss_dssp HTT
T ss_pred hhh
Confidence 553
No 82
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=76.68 E-value=1.1e+02 Score=35.76 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=81.1
Q ss_pred hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCC
Q 001247 298 NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI 377 (1115)
Q Consensus 298 ~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v 377 (1115)
..+|-+-|..+|.-..= ++.......+.++.+...=|+ ...+-++++.+.+-|.|..||.+|++.+-.+... +.
T Consensus 24 ~~~~~~~y~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~- 97 (507)
T 3u0r_A 24 VGQHKDAYQVILDGVKG-GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--EN- 97 (507)
T ss_dssp GGGGHHHHHHHHHGGGS-CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TC-
T ss_pred ccccHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hh-
Confidence 45688899999986555 788888899999998888786 4668899999999999999999999988877655 33
Q ss_pred CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001247 378 PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 378 ~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
-..+...|++.+--=....+...=+.|..+|+..
T Consensus 98 i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~D 131 (507)
T 3u0r_A 98 LPRVADILTQLLQTDDSAEFNLVNNALLSIFKMD 131 (507)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcC
Confidence 2334444555555445566666667777777763
No 83
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=70.21 E-value=30 Score=40.44 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHH
Q 001247 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1115)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v 324 (1115)
+-.+|..-|+.-|++--..|--+-+-...||+.+|..|++-|..+-.+ .....--++-...|. .| ++.-+..+-
T Consensus 48 aaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLq--td-d~~E~~~V~ 121 (507)
T 3u0r_A 48 AAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQ--TD-DSAEFNLVN 121 (507)
T ss_dssp HHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTT--CC-CHHHHHHHH
T ss_pred HHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHh--cc-chHHHHHHH
Confidence 345555556666665555555444444455666666666666554433 334444444444444 22 222223333
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 001247 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1115)
Q Consensus 325 ~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~ 368 (1115)
+....++..+| ...+.++..-+.-+||.||-.+++-|++
T Consensus 122 ~sL~sllk~Dp-----k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 122 NALLSIFKMDA-----KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHHHHHHHHCH-----HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCh-----HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 33344444333 2333444444444566666655555543
No 84
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=69.80 E-value=6.5 Score=48.83 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=78.4
Q ss_pred hhh--hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCC---Chhh-hcHH------HHHHHHhcccCCChhHHHHHHHH
Q 001247 259 ILS--GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS---ANNE-QFHS------VFSEFLKRLTDRIVAVRMSVLEH 326 (1115)
Q Consensus 259 lL~--~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~---~~~~-~~~~------~~~~fL~R~~D~s~~VR~~~v~~ 326 (1115)
++. +++|.|+.-|.++++.+|..|+++++.|.+.+.. .|.. ..|. +|-.++ ..-+.++|.+..-+
T Consensus 601 Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll---~s~D~~~r~AAagA 677 (778)
T 3opb_A 601 IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL---QLSDVESQRAVAAI 677 (778)
T ss_dssp HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG---GCSCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH---cCCCHHHHHHHHHH
Confidence 554 4899999999999999999999999999998752 3332 2233 455555 33567777776654
Q ss_pred hHHHHhcCCCC----CChHHHHHHHHHHcCC--chhHHHHHHHHHHHHhhhhhcCCCCHHHH
Q 001247 327 VKSCLLTDPSR----ADAPQILTALCDRLLD--FDENVRKQVVAVICDVACHALNSIPVETV 382 (1115)
Q Consensus 327 ~~~il~~~~~~----~~~~~l~~~l~~rL~D--~DekVR~aaV~~i~~la~~~l~~v~~~~l 382 (1115)
...+-..+|.. -...+.++.+..-|.| .|+.+|.-++.+++.++.-....-+.+.+
T Consensus 678 LAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~ 739 (778)
T 3opb_A 678 FANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVY 739 (778)
T ss_dssp HHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCC
T ss_pred HHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHH
Confidence 44432233310 0112455666667777 78888888888888777644444444333
No 85
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=68.43 E-value=49 Score=35.52 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchh
Q 001247 277 DTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1115)
Q Consensus 277 ~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~De 356 (1115)
+.++...+-+-++.-..+ ..-||+.+...|.=-.|.+.+||..++++........+. ....+++.|..-|.|.|.
T Consensus 30 ~~kl~~L~qa~el~~~~d---p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~--l~~~~l~~L~~Ll~d~d~ 104 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSC---AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE--LLPHVINVVSMLLRDNSA 104 (257)
T ss_dssp HHHHHHHHHHHHHHTTTT---GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHHccC---HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCCCH
Confidence 578888888888665543 246677888777766899999999999999988877664 567889999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCC------CCH--H-H---HHHHHHh----hccCChhHHHHHHHHHHHHHHHh
Q 001247 357 NVRKQVVAVICDVACHALNS------IPV--E-T---VKLVAER----LRDKSVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 357 kVR~aaV~~i~~la~~~l~~------v~~--~-~---l~~l~eR----~rDKk~~VR~~Ai~~L~~ly~~~ 411 (1115)
.|-..++.+.+.+-...|.. +++ + + +..+.++ ....+..||-.|++.+-.+--.+
T Consensus 105 ~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~q 175 (257)
T 3gs3_A 105 QVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQ 175 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhh
Confidence 99999999888775544432 231 2 1 2233333 34447899999999999876554
No 86
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=63.51 E-value=1.2e+02 Score=39.68 Aligned_cols=121 Identities=13% Similarity=0.115 Sum_probs=86.5
Q ss_pred HHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHH
Q 001247 247 EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1115)
Q Consensus 247 ~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~ 326 (1115)
.++.++++..+..-..++-|+-+.+-......=..-+.+|+.|..... -....+. --..++.=+.....++-...+.+
T Consensus 424 ~IL~~~Fk~h~~~r~~Iieqi~~RIv~~~~~~~s~~idlLs~lv~~~p-~~l~e~s-kl~e~~dyl~~lp~~~a~~Ll~a 501 (1308)
T 3s51_A 424 NILLETFKIHEMIRQEILEQVLNRVVTRTSSPINHFLDLFSDIIMYAP-LILQNCS-KVTETFDYLTFLPLQTVQGLLKA 501 (1308)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHCH-HHHSSCH-HHHGGGGGTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHhcc-HHHHhhh-HHHHHHHHHhcCCHHHHHHHHHH
Confidence 467788888887777777666665543321111335666666665432 2345555 55777777888888999999999
Q ss_pred hHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001247 327 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1115)
Q Consensus 327 ~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1115)
...++..+++ ....++.-|++-+.=.++..|..||..++.+-.
T Consensus 502 l~PLik~s~~--lrD~lIlvLRKamf~re~~~R~~AV~GfL~lLk 544 (1308)
T 3s51_A 502 VQPLLKISMS--MRDSLILVLRKAMFASQLDARKSAVAGFLLLLK 544 (1308)
T ss_dssp HHHHHTTCHH--HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HhHHHhcCHH--HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 9998887664 344678888888999999999999999998864
No 87
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=62.08 E-value=19 Score=46.30 Aligned_cols=154 Identities=7% Similarity=0.050 Sum_probs=114.2
Q ss_pred Cchhhhhhhhhhhcccc-CCchHHHHHHHHHHHHhhcCCCCCh-hhhcHHHHHHHHhcccCCC-hhHHHHHHHHhHHHHh
Q 001247 256 SPQILSGVVPYLTGELL-TDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRI-VAVRMSVLEHVKSCLL 332 (1115)
Q Consensus 256 ~P~lL~~Vip~Le~eL~-se~~~~R~~At~~lg~m~s~~~~~~-~~~~~~~~~~fL~R~~D~s-~~VR~~~v~~~~~il~ 332 (1115)
.|+.+..|+-.|+.-.+ +.+- .|..+...+--++-..---+ ..+...+|+..+.--.|.- ++||....+....++.
T Consensus 795 ~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~ 873 (997)
T 1vsy_5 795 RKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVH 873 (997)
T ss_dssp CHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 45666668888877676 4566 88888666543333211001 1344789999999999999 9999999999999887
Q ss_pred cC-CCCCChHHHHHHHHHHcCC------------chhHHHHHHHHHHHHhhhhhcCCCC--H---HHHHHHHHhhccCCh
Q 001247 333 TD-PSRADAPQILTALCDRLLD------------FDENVRKQVVAVICDVACHALNSIP--V---ETVKLVAERLRDKSV 394 (1115)
Q Consensus 333 ~~-~~~~~~~~l~~~l~~rL~D------------~DekVR~aaV~~i~~la~~~l~~v~--~---~~l~~l~eR~rDKk~ 394 (1115)
.. +.. ...+++..+.+++.- .+...|.++|-++|.+....+-.+| . ++|..|+....|. .
T Consensus 874 c~~~~~-~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~-~ 951 (997)
T 1vsy_5 874 NWKEEQ-PLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTS-G 951 (997)
T ss_dssp SCCSHH-HHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSC-S
T ss_pred cCCchh-hHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCC-C
Confidence 65 411 234677777777733 2336899999999998888888885 3 6789999999994 5
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 001247 395 LVKRYTMERLADIFRGCC 412 (1115)
Q Consensus 395 ~VR~~Ai~~L~~ly~~~~ 412 (1115)
.|++.+=++|+..++.+.
T Consensus 952 ~i~~tvk~tlseFkrTH~ 969 (997)
T 1vsy_5 952 MTGNAAKNTISEFKKVRA 969 (997)
T ss_dssp SHHHHTHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHhccc
Confidence 599999999999999873
No 88
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=61.65 E-value=25 Score=41.89 Aligned_cols=132 Identities=11% Similarity=0.125 Sum_probs=97.3
Q ss_pred hhhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCC-CC
Q 001247 260 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS-RA 338 (1115)
Q Consensus 260 L~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~-~~ 338 (1115)
|-.|+|-+-.-|...|+++|..|..+|--+. . ...+..-..-+|.....= -|.|++.=..|- .... |.++|. ..
T Consensus 297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~-p~~l~~LL~iLWd~L~~L-DDLSASTgSVMd-LLAk-L~s~p~~a~ 371 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-I-TDSLDLVLEKCWKNIESE-ELISVSKTSNLS-LLTK-IYRENPELS 371 (800)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-C-SSTHHHHHHHHHHHHHTC-CSCCTTHHHHHH-HHHH-HHHHCTTCC
T ss_pred HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-c-hhhHHHHHHHHHHHhhhh-cccchhhHHHHH-HHHH-HHcCCcccc
Confidence 5678888888899999999999999999888 3 335777788999998876 899988755443 3333 333332 11
Q ss_pred ChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhh-ccCChhHHHHHHHH
Q 001247 339 DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERL-RDKSVLVKRYTMER 403 (1115)
Q Consensus 339 ~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~-rDKk~~VR~~Ai~~ 403 (1115)
.-+++++-|--.+.-+=..||.++++++..+. ..++++.+.+++ -+.+.+||+.+.+.
T Consensus 372 ~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-------~~~~LRLIFQNILLE~neeIl~lS~~V 430 (800)
T 3oc3_A 372 IPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-------EESIDFLVAEVVLIEEKDEIREMAIKL 430 (800)
T ss_dssp CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 12377778888899999999999999876443 667777777664 57788888777653
No 89
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=60.75 E-value=23 Score=41.10 Aligned_cols=110 Identities=8% Similarity=0.053 Sum_probs=72.4
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcCCCCCh-hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCC--
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-- 339 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~-~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~-- 339 (1115)
.+|.|-.-|.++++.+|..|+..++.+....+..- .-........++.-....++.++...+.....+...++....
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46777777889999999999999999865432110 111112233333333456788998888888876654332100
Q ss_pred -hHHHHHHHHHHcC-CchhHHHHHHHHHHHHhhhh
Q 001247 340 -APQILTALCDRLL-DFDENVRKQVVAVICDVACH 372 (1115)
Q Consensus 340 -~~~l~~~l~~rL~-D~DekVR~aaV~~i~~la~~ 372 (1115)
....++.|.+.|. ..++.||..|+.+++.++..
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC
Confidence 0122467777887 77999999999999988864
No 90
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=60.49 E-value=15 Score=43.69 Aligned_cols=142 Identities=17% Similarity=0.223 Sum_probs=96.3
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhhccCC
Q 001247 64 LLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE 143 (1115)
Q Consensus 64 lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdif~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~ 143 (1115)
-|...|.|||+.+|.||..|. ..+++..+...+-++|..+.| =+++=..-+.+|..|-.... .....
T Consensus 307 GL~D~DDDVRAVAAetLiPIA---------~p~~l~~LL~iLWd~L~~LDD-LSASTgSVMdLLAkL~s~p~--~a~~d- 373 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP---------ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENP--ELSIP- 373 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC---------CSSTHHHHHHHHHHHHHTCCS-CCTTHHHHHHHHHHHHHHCT--TCCCC-
T ss_pred hcCCcccHHHHHHHHHhhhhc---------chhhHHHHHHHHHHHhhhhcc-cchhhHHHHHHHHHHHcCCc--ccccC-
Confidence 346679999999999998887 236688999999999999965 45555555666666554431 11111
Q ss_pred chHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHH
Q 001247 144 CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAG 223 (1115)
Q Consensus 144 ~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~e~~~i~~~~ld~il~~~~~~~~~~a~~la~~v~~~~~~~l~~~ 223 (1115)
..++..+|--|-+. -.+|+......+..++ ...++..|++++.-+......+++.++.++-.+-+++-
T Consensus 374 -p~LVPRL~PFLRHt-----ITSVR~AVL~TL~tfL------~~~~LRLIFQNILLE~neeIl~lS~~VWk~r~~Ll~~w 441 (800)
T 3oc3_A 374 -PERLKDIFPCFTSP-----VPEVRTSILNMVKNLS------EESIDFLVAEVVLIEEKDEIREMAIKLLKKRRDLPKNL 441 (800)
T ss_dssp -SGGGGGTGGGGTCS-----SHHHHHHHHHHTTTCC------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHTCSCCCHHH
T ss_pred -hHHHHHHHhhhcCC-----cHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 25555555443333 3578877777777666 56788899988765556678888888887333347777
Q ss_pred HHHHHHH
Q 001247 224 IKQFLVS 230 (1115)
Q Consensus 224 i~~~~~~ 230 (1115)
++...+-
T Consensus 442 i~L~MtP 448 (800)
T 3oc3_A 442 ILHFMNV 448 (800)
T ss_dssp HHHHHHH
T ss_pred HHHhcCc
Confidence 7766664
No 91
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=59.31 E-value=21 Score=45.67 Aligned_cols=145 Identities=10% Similarity=0.113 Sum_probs=103.1
Q ss_pred hhhhhhccccCCchHHHHHHHHHHHHhhcCCCCC-hhhhc-HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 001247 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-NNEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1115)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~-~~~~~-~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~ 340 (1115)
++..|...+..-... -.|...++.++...+.. -.+-| =.+...-|..+.||...||.+.-.++..++.+-+.. -.
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~-a~ 131 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV-AI 131 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG-GH
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH-HH
Confidence 333444444443333 77888888888544321 11111 134678888999999999999999998888764432 23
Q ss_pred HHHHHHHHHHcCCc-hhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 341 PQILTALCDRLLDF-DENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 341 ~~l~~~l~~rL~D~-DekVR~aaV~~i~~la~~~l~~v~~---~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
..+++.|..-+..+ .+..+.+|.+.+..++......+.. +++=.+.+-|-|-|++|.+.|..++-++-..
T Consensus 132 ~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~ 205 (986)
T 2iw3_A 132 KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATET 205 (986)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhc
Confidence 67778888777555 5999999999999998765544433 4566889999999999999999998876543
No 92
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=58.20 E-value=38 Score=38.61 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhH
Q 001247 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357 (1115)
Q Consensus 278 ~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~Dek 357 (1115)
.++...+-+-+++-..+. .-+++.+...++=-.|.+.+||.-+++++...-...++ ....++..|...|.|.|..
T Consensus 41 ~Kl~~L~q~~EL~l~~dp---sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e--l~~~~l~~L~~LL~d~d~~ 115 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDP---TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE--LLLKLIANLNMLLRDENVN 115 (386)
T ss_dssp HHHHHHHHHHHHHHTTCG---GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHhccCH---HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCCCHH
Confidence 566666777775333332 34566777777778899999999999999998776553 4678889999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCC------CCH---HH---HHHHHH----hhccCChhHHHHHHHHHHHHHHHhhh
Q 001247 358 VRKQVVAVICDVACHALNS------IPV---ET---VKLVAE----RLRDKSVLVKRYTMERLADIFRGCCL 413 (1115)
Q Consensus 358 VR~aaV~~i~~la~~~l~~------v~~---~~---l~~l~e----R~rDKk~~VR~~Ai~~L~~ly~~~~~ 413 (1115)
|-..++.+.+.+-...|.. .+. ++ +..+.+ .....+..||-.|++.+-.+--.+..
T Consensus 116 V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~ 187 (386)
T 3o2t_A 116 VVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSP 187 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCC
Confidence 9999999887765433332 221 11 223333 33344679999999999887766543
No 93
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=56.32 E-value=58 Score=39.52 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHH------HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001247 342 QILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE------TVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 342 ~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~~v~~~------~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~ 410 (1115)
+-+..|...|...|..||..+++.+..+.....+.+-.- -+..+-+-+.|++-.||.+|+-.|+.+=+.
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 345677778899999999999999998876555433222 245778899999999999999999998775
No 94
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=55.13 E-value=13 Score=41.98 Aligned_cols=147 Identities=11% Similarity=0.043 Sum_probs=86.1
Q ss_pred hhhhhhcc-ccCCchHHHHHHHHHHHHhhcCCCC---Chhhhc---HHHHHHHHhcccCC-ChhHHHHHHHHhHHHHh--
Q 001247 263 VVPYLTGE-LLTDQLDTRLKAVGLVGDLFAVPGS---ANNEQF---HSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLL-- 332 (1115)
Q Consensus 263 Vip~Le~e-L~se~~~~R~~At~~lg~m~s~~~~---~~~~~~---~~~~~~fL~R~~D~-s~~VR~~~v~~~~~il~-- 332 (1115)
++|.|-.- +.+.+..++..|+.+++.+-+..+. .+.... |.+ -..|....|. ..+|+...+-...++-.
T Consensus 171 ~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~L-v~lL~~~~~~~~~~v~~~A~~aL~nLs~~~ 249 (354)
T 3nmw_A 171 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL-VGTLTYRSQTNTLAIIESGGGILRNVSSLI 249 (354)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHH-HHHTTCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHH-HHHhccCCCcccHHHHHHHHHHHHHHHhhc
Confidence 44444443 3456778888888888887662211 111111 222 1223222221 11465554444433221
Q ss_pred -cCCCCCC---hHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 001247 333 -TDPSRAD---APQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1115)
Q Consensus 333 -~~~~~~~---~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~----~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L 404 (1115)
.+++... ....++.|.+.|.+.++.|+..|+.++..++..+.+ .+....+..|.+.++.+...||+.|...|
T Consensus 250 a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL 329 (354)
T 3nmw_A 250 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329 (354)
T ss_dssp TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1222100 013567888899999999999999999988753221 11223466788889999999999999999
Q ss_pred HHHHHH
Q 001247 405 ADIFRG 410 (1115)
Q Consensus 405 ~~ly~~ 410 (1115)
.++-..
T Consensus 330 ~nL~~~ 335 (354)
T 3nmw_A 330 RNLMAN 335 (354)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 998875
No 95
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=52.13 E-value=1.9e+02 Score=37.43 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=81.2
Q ss_pred CchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhcC----CC---CChhhhcHHHHHHHHhcccCCChhHHHHHHHHhH
Q 001247 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV----PG---SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVK 328 (1115)
Q Consensus 256 ~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~----~~---~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~ 328 (1115)
.|+++..+.+.++..-...+..+|..|.-.+|.|... .+ ......+.+....-++ ..+..-++.++++.+
T Consensus 389 t~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~---~~~~~~~~~~LkaLG 465 (1056)
T 1lsh_A 389 TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD---RAKEEEIVLALKALG 465 (1056)
T ss_dssp CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHh---cCChHHHHHHHHHhh
Confidence 3345555455554443446778888888888888753 11 1223333444444443 345778899999988
Q ss_pred HHHhcCCCCCChHHHHHHHHHHcC-------CchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccC--ChhHHHH
Q 001247 329 SCLLTDPSRADAPQILTALCDRLL-------DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDK--SVLVKRY 399 (1115)
Q Consensus 329 ~il~~~~~~~~~~~l~~~l~~rL~-------D~DekVR~aaV~~i~~la~~~l~~v~~~~l~~l~eR~rDK--k~~VR~~ 399 (1115)
++ .+| +.++.|.+.+. +...+||.+||.++..+++.. |..+-..+.....|+ .++||-.
T Consensus 466 N~--g~p------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~----p~~v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 466 NA--GQP------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD----PRKVQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp HH--TCG------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC----HHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred cc--CCh------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc----hHHHHHHHHHHhcCCCCChHHHHH
Confidence 73 234 34555555442 234589999999877776542 334444555666444 4689988
Q ss_pred HHHHHHH
Q 001247 400 TMERLAD 406 (1115)
Q Consensus 400 Ai~~L~~ 406 (1115)
|...|.+
T Consensus 534 A~~~Lm~ 540 (1056)
T 1lsh_A 534 SCIVFFE 540 (1056)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777754
No 96
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=50.68 E-value=3.9e+02 Score=31.96 Aligned_cols=108 Identities=16% Similarity=0.049 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhCCcC---c-cccHHHHHHHHhhcc--------ccchHhHHHHHHHh
Q 001247 605 HVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL---L-GGTEEELVNLLKEEN--------EIIKEGILHVLAKA 672 (1115)
Q Consensus 605 ~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~l---f-~~~~~~L~~~l~~~~--------~~~~~~~L~~L~~~ 672 (1115)
.++.|++.+.. ++......|...|..+|. +|.. + .+-+..|+.+|...+ +.+...++.+|.++
T Consensus 356 glp~Lv~LL~s----~~~~v~~~A~~aL~nLs~-~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL 430 (584)
T 3l6x_A 356 ALSAIADLLTN----EHERVVKAASGALRNLAV-DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV 430 (584)
T ss_dssp HHHHHHHGGGC----SCHHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcC----CCHHHHHHHHHHHHHHhC-ChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence 47777776532 122344567788888886 3432 1 112477888777642 23456678888765
Q ss_pred hcchHhh-hhcccchHHHHHHHHhhcC--ChHHHHHHHHHHHhhcCCC
Q 001247 673 GGTIREQ-LAATSSSVDLLLERLCLEG--SRRQAKYAVHALAAITKDD 717 (1115)
Q Consensus 673 ~~~~~~~-~~~~~~~l~~~L~~la~~G--tp~~AK~Av~~L~~~~~~~ 717 (1115)
...=+++ -.-.+...++.|.++...| .++..|.|..+|..+...+
T Consensus 431 ~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 431 IAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred hcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 3210111 1112445788899998887 7999999999998777643
No 97
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=50.34 E-value=19 Score=42.07 Aligned_cols=147 Identities=11% Similarity=0.048 Sum_probs=86.7
Q ss_pred hhhhhhcc-ccCCchHHHHHHHHHHHHhhcCC-C--CChhhhc---HHHHHHHHhcccCC-ChhHHHHHHHHhHHHHh--
Q 001247 263 VVPYLTGE-LLTDQLDTRLKAVGLVGDLFAVP-G--SANNEQF---HSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLL-- 332 (1115)
Q Consensus 263 Vip~Le~e-L~se~~~~R~~At~~lg~m~s~~-~--~~~~~~~---~~~~~~fL~R~~D~-s~~VR~~~v~~~~~il~-- 332 (1115)
++|.|-.- +.+.+..++..|+.+++.+-+.. + ..+.... |.+. ..|....|. ..+|+...+-...++-.
T Consensus 287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv-~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV-GTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHH-HHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHH-HHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 44555443 35567888888888888877622 1 1121111 2222 223222221 11355544444433221
Q ss_pred -cCCCCCC---hHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 001247 333 -TDPSRAD---APQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1115)
Q Consensus 333 -~~~~~~~---~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~----~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L 404 (1115)
.+++... ....++.|...|.+.+++|+..|+.+++.++..+.+ .+....+..|.+.++.+...||+.|...|
T Consensus 366 a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL 445 (458)
T 3nmz_A 366 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 445 (458)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2222100 013457788899999999999999999988753221 12223466788889999999999999999
Q ss_pred HHHHHH
Q 001247 405 ADIFRG 410 (1115)
Q Consensus 405 ~~ly~~ 410 (1115)
.+|-..
T Consensus 446 ~nL~~~ 451 (458)
T 3nmz_A 446 RNLMAN 451 (458)
T ss_dssp HHHHTC
T ss_pred HHHHcC
Confidence 998654
No 98
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=47.32 E-value=2.1e+02 Score=36.65 Aligned_cols=293 Identities=10% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCC-CCCCchHHHHHHHHHHHhccCCCCCCCC------------
Q 001247 52 MQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPE-APYSDDVLKDIFQLIVGTFSGLKDTGGP------------ 118 (1115)
Q Consensus 52 l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APd-aPy~~~~lkdif~l~~~~~~~L~d~~~~------------ 118 (1115)
+.++...++++.-+.|+++.||..+|..+..+.+-+.+. .||-++ |++-+-..|..=..+.+.
T Consensus 533 l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~----il~~l~~lL~~~~~~~~~~~~~~~~~~~~~ 608 (980)
T 3ibv_A 533 IPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTES----SLAMLGDLLNISVSPVTDMDAPVPTLNSSI 608 (980)
T ss_dssp HHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHH----HHHHTTGGGCCCCCCCCC--CSSCCHHHHH
T ss_pred HHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHH----HHHHHHHhhcCcCCCCCcccccccchhhhc
Q ss_pred ---ChhhHHHHHHHHHhhhhhhhh---ccCC-chHHHHHHHHHHHHhhcCCChh-cHHHHHHHHHHHHhcccccccHHHH
Q 001247 119 ---SFGRRVVILETLAKYRSCVVM---LDLE-CDELVNEMYSTFFAVASDDHPE-SVLSSMQTIMIVLLEESEDIQEDLL 190 (1115)
Q Consensus 119 ---~~~~~~~lLe~la~vks~vl~---~dl~-~~~li~~lF~~~~~~v~~~~~~-~v~~~m~~Il~~vI~e~~~i~~~~l 190 (1115)
.|..+.|+.|.++.+=+..-. .... .+.++..+|+.+-..+....+. .-...+..++..+-.-+...+..
T Consensus 609 ~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~-- 686 (980)
T 3ibv_A 609 RNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPAR-- 686 (980)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSC--
T ss_pred ccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcc--
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhcc
Q 001247 191 VILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGE 270 (1115)
Q Consensus 191 d~il~~~~~~~~~~a~~la~~v~~~~~~~l~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~e 270 (1115)
.++..| -..++.++.+.+-+.+..|-.+....+ +.-..+..+-.+...=+.+.+|.+-..
T Consensus 687 --------~~~~~p----~~~~f~~~~~~il~~l~~~~~~~~ire--------a~~~~~~r~i~~lg~~~~p~lp~~i~~ 746 (980)
T 3ibv_A 687 --------GSEEVA----WLASFNKASDEIFLILDRMGFNEDIRG--------AVRFTSGRIINVVGPDMLPKVPQLISI 746 (980)
T ss_dssp --------C-CCCS----HHHHHHHHHHHHHHHHHHSCCSHHHHH--------HHHHHHHHHTTTTHHHHTTTHHHHHHH
T ss_pred --------cCCCCc----HHHHHHHHHHHHHHHHHhcCCcHHHHH--------HHHHHHHHHHHHccHhHHHHHHHHHHH
Q ss_pred ccCC-chHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhc--------------ccCCChhHHHHHHHHhHHHHhcCC
Q 001247 271 LLTD-QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR--------------LTDRIVAVRMSVLEHVKSCLLTDP 335 (1115)
Q Consensus 271 L~se-~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R--------------~~D~s~~VR~~~v~~~~~il~~~~ 335 (1115)
|.+. +...=.....++|.+...=+.++..--..++..++.| +. -...+|.+...+...|+.++.
T Consensus 747 ll~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r-~~~~l~r~~~~fl~~i~~~~~ 825 (980)
T 3ibv_A 747 LLNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAV-KQNDLRKSYISFILQLLNKGF 825 (980)
T ss_dssp HHHHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHH-HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHH-HHHHHHHHHHHHHHHHHhCCc
Q ss_pred CCCChHH--------HHHHHHHHcCC-chhHHHHHHHHHHHHhhh
Q 001247 336 SRADAPQ--------ILTALCDRLLD-FDENVRKQVVAVICDVAC 371 (1115)
Q Consensus 336 ~~~~~~~--------l~~~l~~rL~D-~DekVR~aaV~~i~~la~ 371 (1115)
..-..++ ++..+...-.| +|.-++..++..+..+..
T Consensus 826 ~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~ 870 (980)
T 3ibv_A 826 GSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVS 870 (980)
T ss_dssp TGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHH
T ss_pred hhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
No 99
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=45.98 E-value=86 Score=33.21 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=62.4
Q ss_pred HHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHH-HcCCchhHHHHHHHHHHHHhhh-hhcCCCCHHHHHH
Q 001247 307 EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD-RLLDFDENVRKQVVAVICDVAC-HALNSIPVETVKL 384 (1115)
Q Consensus 307 ~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~-rL~D~DekVR~aaV~~i~~la~-~~l~~v~~~~l~~ 384 (1115)
.+..=..|.+-+||..-+...++. + + . .+++..+.. ---|...+||-.+.+++.++.. ..++. ++..
T Consensus 75 la~~L~~~~~deVR~~Av~lLg~~--~-~---~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----~l~~ 143 (240)
T 3l9t_A 75 LAFLAYQSDVYQVRMYAVFLFGYL--S-K---D-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----ALPI 143 (240)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHT--T-T---S-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----THHH
T ss_pred HHHHHHhCcchHHHHHHHHHHHhc--c-C---c-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----HHHH
Confidence 333444566668888888866654 1 2 2 578888876 5668888999888888887775 44442 4556
Q ss_pred HHHhhccCChhHHHHHHHHHH
Q 001247 385 VAERLRDKSVLVKRYTMERLA 405 (1115)
Q Consensus 385 l~eR~rDKk~~VR~~Ai~~L~ 405 (1115)
+.+=++|.+..||+.|+.++-
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~r 164 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLR 164 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTC
T ss_pred HHHHhcCCCHHHHHHHHHhhH
Confidence 677888888999998888765
No 100
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=42.94 E-value=1.2e+02 Score=36.57 Aligned_cols=137 Identities=13% Similarity=0.061 Sum_probs=89.6
Q ss_pred CCchHHHHHHHHHHHHhhcCCCC--Ch---hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC-C-ChHHHHH
Q 001247 273 TDQLDTRLKAVGLVGDLFAVPGS--AN---NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-A-DAPQILT 345 (1115)
Q Consensus 273 se~~~~R~~At~~lg~m~s~~~~--~~---~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~-~-~~~~l~~ 345 (1115)
+.++.++..|+..|..+-++.+. .. .-.........++=....++.|+...+.+..++-. ++.. . .....+.
T Consensus 320 s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~-~~~~~~~I~~g~ip 398 (584)
T 3l6x_A 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV-DARNKELIGKHAIP 398 (584)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHT-TCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhC-ChhHHHHHHhCCHH
Confidence 56899999999999999775431 01 11112223334444456678999999998887543 3321 0 1123445
Q ss_pred HHHHHcCCc--------hhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccC--ChhHHHHHHHHHHHHHHH
Q 001247 346 ALCDRLLDF--------DENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDK--SVLVKRYTMERLADIFRG 410 (1115)
Q Consensus 346 ~l~~rL~D~--------DekVR~aaV~~i~~la~~~l~----~v~~~~l~~l~eR~rDK--k~~VR~~Ai~~L~~ly~~ 410 (1115)
.|...|..+ .+.|+..||.+++.+...+.. .+....+..|...++++ ..+|++.|...|+.+|..
T Consensus 399 ~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 399 NLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 666667666 367888999988877542211 12223566778888887 899999999999999974
No 101
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.51 E-value=68 Score=35.32 Aligned_cols=162 Identities=13% Similarity=0.095 Sum_probs=84.1
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCCC
Q 001247 380 ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGF 459 (1115)
Q Consensus 380 ~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~ 459 (1115)
.+++.+..-.-|||..-|+-+...|+.||....+...-...-..-++.+|+-.+..--..+.=-..+.+.+.+.++|...
T Consensus 37 ~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~ 116 (307)
T 2zu6_B 37 GVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTY 116 (307)
T ss_dssp GHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhHhcccccchHHHHHHHHHHHHHhCCCCHHH
Confidence 45666778888999999999999999999654322100000112234445544443111110013678888888998764
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhc---C--C---CcHHHHHHHHHHHH-HHh
Q 001247 460 SVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQ---MHQ---D--G---DAPEIQKKILFCFR-VMS 527 (1115)
Q Consensus 460 ~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~~~~~~~~~l~~~~---~~~---~--~---~~~~~~~kl~~~i~-~Ls 527 (1115)
-.+.... ..++.+..++..-- .++.... ... + + ..+++++++...+. +++
T Consensus 117 l~~~~~~-------~~~~~g~~~l~~a~-----------~~l~~~~~~~~~~~~WG~~~~~~~~eelkkki~~lL~EY~~ 178 (307)
T 2zu6_B 117 IDSYKGT-------VDCVQARAALDKAT-----------VLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLL 178 (307)
T ss_dssp TGGGTTT-------CCCHHHHHHHHHHH-----------HHHHTCC----CCCSSCCCSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-------ccchHHHHHHHHHH-----------HHhcccccHhHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 3211111 23554443322210 1222110 000 1 1 34678888877774 443
Q ss_pred hhcCCchhHHHHHHHHH--hhhhHHHHHHHHHHhcc
Q 001247 528 RSFAEPAKAEENFLILD--QLKDANVWKILMNLLDS 561 (1115)
Q Consensus 528 ~~fpd~~ka~~~l~kf~--~l~D~r~~~llk~~~~~ 561 (1115)
. .|...|..|++.+. ..+..=+++.+...++.
T Consensus 179 ~--~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~ 212 (307)
T 2zu6_B 179 S--GDISEAEHCLKELEVPHFHHELVYEAIIMVLES 212 (307)
T ss_dssp H--CCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTC
T ss_pred C--CCHHHHHHHHHHcCCCcchHHHHHHHHHHHHcc
Confidence 3 58888877877664 23333344444444543
No 102
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=40.94 E-value=32 Score=38.67 Aligned_cols=144 Identities=13% Similarity=0.099 Sum_probs=90.6
Q ss_pred hhhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCC----hhh--hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC
Q 001247 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA----NNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD 334 (1115)
Q Consensus 261 ~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~----~~~--~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~ 334 (1115)
.++||.|-.-|.++++.+|..|+..|+.+-...+.. +.+ .=|.+.+.. .+. .++.++...+....++-..+
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL-~~~--~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA-LEV--KKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHH-HHC--CCHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHH-hcC--CCHHHHHHHHHHHHHHHccC
Confidence 356888888889999999999999999986542211 111 113333322 222 35677776666655532212
Q ss_pred CC-CCC---hHHHHHHHHHHcCCchh----HHHHHHHHHHHHhhhh---hcC----CCCHHHHHHHHHhhccCChhHHHH
Q 001247 335 PS-RAD---APQILTALCDRLLDFDE----NVRKQVVAVICDVACH---ALN----SIPVETVKLVAERLRDKSVLVKRY 399 (1115)
Q Consensus 335 ~~-~~~---~~~l~~~l~~rL~D~De----kVR~aaV~~i~~la~~---~l~----~v~~~~l~~l~eR~rDKk~~VR~~ 399 (1115)
++ ... ....++.|.+.|.+.++ .|+..|+-++..++.. ..+ .+....+..+.+.+++....|+++
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 11 000 12345677777776655 5898888888877641 111 112235677889999999999999
Q ss_pred HHHHHHHH
Q 001247 400 TMERLADI 407 (1115)
Q Consensus 400 Ai~~L~~l 407 (1115)
|...|+++
T Consensus 283 A~~aL~nL 290 (354)
T 3nmw_A 283 ACGTLWNL 290 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998887
No 103
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.17 E-value=1.2e+02 Score=34.25 Aligned_cols=155 Identities=12% Similarity=0.005 Sum_probs=72.9
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhhhccCCCchhHHHHhhhcCCCCCC
Q 001247 380 ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGF 459 (1115)
Q Consensus 380 ~~l~~l~eR~rDKk~~VR~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~il~~~y~~d~~~~~ve~vl~e~LlP~~~ 459 (1115)
.+++.+..-.-|||..-|+.+...|..||....+...--..-..-+..+|+-.+..--+.+.=-..+-+.+.+.++|...
T Consensus 88 ~~v~~~I~~aLdr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~ 167 (358)
T 3eiq_C 88 GVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTY 167 (358)
T ss_dssp GHHHHHHHHHTTSCHHHHHHHHHHHHTTTTTSCCHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSST
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHH
Confidence 45666667778999999999999999999532211000000012244444444442111110013678888888998764
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCcHHHHHHHHHHHH-HHhhhcCCchhHH
Q 001247 460 SVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQD-GDAPEIQKKILFCFR-VMSRSFAEPAKAE 537 (1115)
Q Consensus 460 ~~~~R~~~ll~l~~~lD~~~~ka~~~il~~k~~~~~~~~~~l~~~~~~~~-~~~~~~~~kl~~~i~-~Ls~~fpd~~ka~ 537 (1115)
=.+.... ...+.+..++.+-- ..-+.+....+.-..+....+ ...+++++++..++. ++.. .|...|.
T Consensus 168 l~~~~~~-------~~~~~~~~~l~~a~-~~L~~~~~~~~~~~~WG~g~~~~~veelkkki~~lL~EY~~s--~D~~EA~ 237 (358)
T 3eiq_C 168 IDSYKGT-------VDCVQARAALDKAT-VLLSMSKGGKRKDSVWGSGGGQQPVNHLVKEIDMLLKEYLLS--GDISEAE 237 (358)
T ss_dssp TGGGC----------CCHHHHHHHHHHH-HHHTC---------CCCCCCSSSCHHHHHHHHHHHHHHHHHH--CCHHHHH
T ss_pred HHHHhhc-------ccchHHHHHHHHHH-HHHhccchHHHHHHhcCCCCCCccHHHHHHHHHHHHHHhccC--CCHHHHH
Confidence 3222111 12333333322210 000001111111111110001 134677888777764 4433 5777777
Q ss_pred HHHHHHH
Q 001247 538 ENFLILD 544 (1115)
Q Consensus 538 ~~l~kf~ 544 (1115)
.|++.+.
T Consensus 238 ~ci~EL~ 244 (358)
T 3eiq_C 238 HCLKELE 244 (358)
T ss_dssp HHHHHHC
T ss_pred HHHHHcc
Confidence 7776664
No 104
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=36.42 E-value=39 Score=43.47 Aligned_cols=164 Identities=15% Similarity=0.193 Sum_probs=95.3
Q ss_pred hhhhhhccccCCch-HHHHH-HHHHHHHhhcCCCCChhhhcHHHHHHHHhcccC-----CChhHHHHHHHHhHHHHhcCC
Q 001247 263 VVPYLTGELLTDQL-DTRLK-AVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTD-----RIVAVRMSVLEHVKSCLLTDP 335 (1115)
Q Consensus 263 Vip~Le~eL~se~~-~~R~~-At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D-----~s~~VR~~~v~~~~~il~~~~ 335 (1115)
++|+|-.-...+|. ++-.. |..++..|=..+ +. ++.=..++..... .+- +|...+.+...+...|.
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~---~~---~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~ 833 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMP---IR---KNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAEL 833 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSC---CC---HHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCC---CC---HHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHH
Confidence 56666433333343 44444 666666543222 22 2223334443332 344 99999999877776553
Q ss_pred ---CCCChHHHHHHHHHHcCCch-hHHHHHHHHHHHHhhhhh-c-CCCCHHHHHHHHHhhcc------------CChhHH
Q 001247 336 ---SRADAPQILTALCDRLLDFD-ENVRKQVVAVICDVACHA-L-NSIPVETVKLVAERLRD------------KSVLVK 397 (1115)
Q Consensus 336 ---~~~~~~~l~~~l~~rL~D~D-ekVR~aaV~~i~~la~~~-l-~~v~~~~l~~l~eR~rD------------Kk~~VR 397 (1115)
+.++...|.+.+...|.|+. -.||..|-.+++.+.... + ..+ .+++..+.+|.-. |....|
T Consensus 834 f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~-~~li~~f~~~~~~~~~~~~~~~~~~~~~~~r 912 (997)
T 1vsy_5 834 LQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPL-LSLIERFAKGLDVNKYTSKERQKLSKTDIKI 912 (997)
T ss_dssp TTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHH-HHHHHHHTTSSTTTSSCHHHHHHHHHHCHHH
T ss_pred HHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhH-HHHHHHHHHHHhhcccccccccccchHHHHH
Confidence 22344578899999999999 999999999888764322 2 211 2455556566522 111456
Q ss_pred HHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHhhhh-hccCC
Q 001247 398 RYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL-YDKDF 441 (1115)
Q Consensus 398 ~~Ai~~L~~ly~~~~~~~~~~~~~~~~~~wIP~~il~~~-y~~d~ 441 (1115)
..|+-+||.+-..+ +....-=.|+|+.+..+. +.+|+
T Consensus 913 H~aVLgL~AlV~a~-------Py~vP~P~w~P~~l~~La~~~~~~ 950 (997)
T 1vsy_5 913 HGNVLGLGAIISAF-------PYVFPLPPWIPKNLSNLSSWARTS 950 (997)
T ss_dssp HHHHHHHHHHHTTC-------SCCSSCCTHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHhhC-------CCCCCCCcccHHHHHHHHHHhCCC
Confidence 66777777776653 111111279999987665 45553
No 105
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=31.43 E-value=1.2e+02 Score=34.85 Aligned_cols=109 Identities=12% Similarity=0.020 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhCCcCc-----cccHHHHHHHHhhccccchHhHHHHHHHhhcchHhh
Q 001247 605 HVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLL-----GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ 679 (1115)
Q Consensus 605 ~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf-----~~~~~~L~~~l~~~~~~~~~~~L~~L~~~~~~~~~~ 679 (1115)
.|+.|++.+... +......|...|..++..+|..= .+-+..|+++|.++++.+...+..+|.+++..-+++
T Consensus 3 ~l~~lv~~L~s~----~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 3 TIPKAVQYLSSQ----DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp CHHHHHHHHHSS----CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred CHHHHHHHHCCC----CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 367788766532 11234566778888887666432 233689999999877767777888887776421111
Q ss_pred h-hcccchHHHHHHHHhh-cCChHHHHHHHHHHHhhcCCC
Q 001247 680 L-AATSSSVDLLLERLCL-EGSRRQAKYAVHALAAITKDD 717 (1115)
Q Consensus 680 ~-~~~~~~l~~~L~~la~-~Gtp~~AK~Av~~L~~~~~~~ 717 (1115)
- .-....-++.|-++-. .|++..-..|+.+|..++..+
T Consensus 79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~ 118 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH
Confidence 1 1113345677777777 788988889999998777653
No 106
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=29.03 E-value=2.7e+02 Score=35.91 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=69.0
Q ss_pred HHHHHHHHH---hhhhhhHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh-Cchhhhhhhhhhhcc-ccCC--chHHH
Q 001247 207 RLAMNVIEQ---CAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGE-LLTD--QLDTR 279 (1115)
Q Consensus 207 ~la~~v~~~---~~~~l~~~i~~~~~~~l~~~~~~~~~~~~~h~li~el~~~-~P~lL~~Vip~Le~e-L~se--~~~~R 279 (1115)
.|+.+.|.. |...+-+.+..++.+.+..+ ...+..-.|..|--. .|..+..+.|.|+.. -.+. ...+|
T Consensus 421 slV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~-----~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~~~~~~~rvr 495 (1056)
T 1lsh_A 421 SLVFRYCANTVSCPDELLQPLHDLLSQSSDRA-----KEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQ 495 (1056)
T ss_dssp HHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCCCCSCHHHH
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHhhccCChhHHHHHHHhhcCccccccccchHHH
Confidence 555555532 44454555555555544321 111222233333222 565555555555432 0112 23455
Q ss_pred HHHHHHHHHhhcCCCCChhhhcHHH-HHHHHhcc--cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchh
Q 001247 280 LKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRL--TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1115)
Q Consensus 280 ~~At~~lg~m~s~~~~~~~~~~~~~-~~~fL~R~--~D~s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~De 356 (1115)
..|+..|.+ ++..+|.. ...++.-+ .+-.++||++.+... +.++|+.. .+.......-.|++.
T Consensus 496 ~aAi~ALr~--------~~~~~p~~v~~il~~i~~n~~e~~EvRiaA~~~L---m~t~P~~~---~l~~ia~~l~~E~~~ 561 (1056)
T 1lsh_A 496 AEAIMALRN--------IAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVF---FESKPSVA---LVSMVAVRLRREPNL 561 (1056)
T ss_dssp HHHHHTTTT--------GGGTCHHHHHHHHHHHHHCTTSCHHHHHHHHHHH---HHTCCCHH---HHHHHHHHHTTCSCH
T ss_pred HHHHHHHHH--------hhhhchHHHHHHHHHHhcCCCCChHHHHHHHHHH---HHHCcCHH---HHHHHHHHHhhCchH
Confidence 566554432 33456643 34566666 445666777655542 34566421 222222223355777
Q ss_pred HHHHHHHHHHHHhhh
Q 001247 357 NVRKQVVAVICDVAC 371 (1115)
Q Consensus 357 kVR~aaV~~i~~la~ 371 (1115)
.|+.-+...+..++.
T Consensus 562 QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 562 QVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 777766666655554
No 107
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=28.88 E-value=2.2e+02 Score=28.14 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=67.8
Q ss_pred HHHHHhcccCC---ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh---c--CC
Q 001247 305 FSEFLKRLTDR---IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---L--NS 376 (1115)
Q Consensus 305 ~~~fL~R~~D~---s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~---l--~~ 376 (1115)
+..++.|..|- ++..-. .++ +-+++.+.+. ...+.+.+|.+||...+..|.+.|+..+..+.... | ..
T Consensus 16 ~~~~IekATs~~~~~~Dw~~-~le-icD~I~~~~~--~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~ev 91 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTEDWSL-IMD-ICDKVGSTPN--GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEV 91 (163)
T ss_dssp THHHHHHHTCTTCSSCCHHH-HHH-HHHHHHHSSS--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHH-HHH-HHHHHhCCCc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45666666663 233222 122 2255555553 46799999999999999999999999888776543 2 23
Q ss_pred CCHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHhhh
Q 001247 377 IPVETVKLVAERLRDK-SVLVKRYTMERLADIFRGCCL 413 (1115)
Q Consensus 377 v~~~~l~~l~eR~rDK-k~~VR~~Ai~~L~~ly~~~~~ 413 (1115)
.+.+.+..+...+..| .+.||+.++. |-.-|...+.
T Consensus 92 as~~Fl~el~~l~~~~~~~~Vk~kil~-li~~W~~~f~ 128 (163)
T 1x5b_A 92 CSRDFATEVRAVIKNKAHPKVCEKLKS-LMVEWSEEFQ 128 (163)
T ss_dssp TSHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHTT
T ss_pred hhHHHHHHHHHHHccCCCHHHHHHHHH-HHHHHHHHhc
Confidence 4566777666555432 2589998887 4466776543
No 108
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=28.30 E-value=8.9e+02 Score=31.20 Aligned_cols=237 Identities=11% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCC---------CCC---------------CchHHHHHHHHHHH
Q 001247 52 MQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPE---------APY---------------SDDVLKDIFQLIVG 107 (1115)
Q Consensus 52 l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APd---------aPy---------------~~~~lkdif~l~~~ 107 (1115)
|.++...|. .++..+++||+...|-|+.-|..=|... .|| +.+++-.+|+-+-.
T Consensus 564 L~~vl~~L~--~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~ 641 (1073)
T 3gjx_A 564 LKTVVNKLF--EFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGY 641 (1073)
T ss_dssp HHHHHHHHH--HHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q ss_pred hccCCCCCC--------------------------------CCC-hhhHHHHHHHHHhhhhhhhhccCC-chHHHHHHHH
Q 001247 108 TFSGLKDTG--------------------------------GPS-FGRRVVILETLAKYRSCVVMLDLE-CDELVNEMYS 153 (1115)
Q Consensus 108 ~~~~L~d~~--------------------------------~~~-~~~~~~lLe~la~vks~vl~~dl~-~~~li~~lF~ 153 (1115)
-...+.+.. ++- -++-.+||+..+.|-+-+---=++ ...+..+|++
T Consensus 642 vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~ 721 (1073)
T 3gjx_A 642 MIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLN 721 (1073)
T ss_dssp HHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHH
Q ss_pred H---HHHhh------cCCChhc---------HHHHHHHHHHHHhccccc---ccHHHHHHHHHhh--------cCCCchH
Q 001247 154 T---FFAVA------SDDHPES---------VLSSMQTIMIVLLEESED---IQEDLLVILLSAL--------GRNKNDT 204 (1115)
Q Consensus 154 ~---~~~~v------~~~~~~~---------v~~~m~~Il~~vI~e~~~---i~~~~ld~il~~~--------~~~~~~~ 204 (1115)
. +.+.+ .+....+ |...+..++...|+-++. |...++..|+..+ ...+...
T Consensus 722 ~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~e 801 (1073)
T 3gjx_A 722 VYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPE 801 (1073)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTH
T ss_pred HHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHH
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhh--------cCCCCCCCCcchHHHHHHHHHhhCchhhhh--------hhhhhh
Q 001247 205 ARRLAMNVIEQCAGKLEAGIKQFLVSSM--------SGDSRPGHSHIDYHEVIYDVYRCSPQILSG--------VVPYLT 268 (1115)
Q Consensus 205 a~~la~~v~~~~~~~l~~~i~~~~~~~l--------~~~~~~~~~~~~~h~li~el~~~~P~lL~~--------Vip~Le 268 (1115)
.-.+...|+++....+.+.+...|..+. .+-..-.+-..+.++|+..+...||..+.+ |+-.+-
T Consensus 802 vL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~ 881 (1073)
T 3gjx_A 802 VLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSII 881 (1073)
T ss_dssp HHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHH
Q ss_pred ccccCCchHHHHHHHHHHHHhh
Q 001247 269 GELLTDQLDTRLKAVGLVGDLF 290 (1115)
Q Consensus 269 ~eL~se~~~~R~~At~~lg~m~ 290 (1115)
.-.++++.++=-.+.+++-+++
T Consensus 882 wa~kh~~r~i~~~~l~~~~~ll 903 (1073)
T 3gjx_A 882 WAFKHTMRNVADTGLQILFTLL 903 (1073)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCChhHHHHHHHHHHHHH
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=27.66 E-value=1.4e+02 Score=31.32 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=41.8
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC---CC-CHHHHHHHHHhhc-cCChhHHHHHHHHHHHH
Q 001247 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALN---SI-PVETVKLVAERLR-DKSVLVKRYTMERLADI 407 (1115)
Q Consensus 343 l~~~l~~rL~D~DekVR~aaV~~i~~la~~~l~---~v-~~~~l~~l~eR~r-DKk~~VR~~Ai~~L~~l 407 (1115)
.++.|...|...++.|+..|+.++.-++..+.+ .| ...-+..+.+-++ .+...+|+.|...|.++
T Consensus 53 ~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL 122 (233)
T 3tt9_A 53 GILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122 (233)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 346666677778899999999999988763211 11 1123445556665 36788998886555444
No 110
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=26.78 E-value=2e+02 Score=28.00 Aligned_cols=104 Identities=15% Similarity=0.073 Sum_probs=68.4
Q ss_pred HHHHHHhcccCCChh-HHH-HHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-----cCC
Q 001247 304 VFSEFLKRLTDRIVA-VRM-SVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-----LNS 376 (1115)
Q Consensus 304 ~~~~fL~R~~D~s~~-VR~-~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~-----l~~ 376 (1115)
.+..++.|..|-+-. --. ..++.| +++.+.+. ..++.+.+|.+|+...+++|=+.|...+....... ...
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileic-D~I~~~~~--~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~ei 87 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFC-EQLNEDFE--GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEV 87 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHH-HHGGGSSS--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHH-HHHHCCCC--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 455666666554320 011 122333 44555553 46789999999999999999999988887766533 234
Q ss_pred CCHHHHHHHHHhhccC------ChhHHHHHHHHHHHHHHHh
Q 001247 377 IPVETVKLVAERLRDK------SVLVKRYTMERLADIFRGC 411 (1115)
Q Consensus 377 v~~~~l~~l~eR~rDK------k~~VR~~Ai~~L~~ly~~~ 411 (1115)
.+.+.+..|..++.+| ...||...+..+-. |...
T Consensus 88 as~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~-W~~~ 127 (149)
T 3g2s_A 88 GKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYS-WTVG 127 (149)
T ss_dssp TSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHH-HHHH
T ss_pred hhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHH-HHHH
Confidence 4778888888888876 45799887776544 4443
No 111
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=26.45 E-value=2.5e+02 Score=27.86 Aligned_cols=106 Identities=11% Similarity=0.047 Sum_probs=72.3
Q ss_pred HHHHHHHHhcccCC---ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh---cC
Q 001247 302 HSVFSEFLKRLTDR---IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---LN 375 (1115)
Q Consensus 302 ~~~~~~fL~R~~D~---s~~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~---l~ 375 (1115)
++.+..++.|..|- ++..- .+-.+-+++.+.+. ...+.+.+|.+|+...+.+|.+.|+..+..+.... |+
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~--~ileicD~I~~~~~--~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh 86 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWE--YIIGFCDQINKELE--GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFH 86 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHH--HHHHHHHHHHHSTT--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHH--HHHHHHHHHHcCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 34466777777774 33332 22233355555553 46789999999999999999999999888776532 33
Q ss_pred --CCCHHHHHHHHHhhccC------ChhHHHHHHHHHHHHHHHhh
Q 001247 376 --SIPVETVKLVAERLRDK------SVLVKRYTMERLADIFRGCC 412 (1115)
Q Consensus 376 --~v~~~~l~~l~eR~rDK------k~~VR~~Ai~~L~~ly~~~~ 412 (1115)
..+.+.+..|...+..| ...||+.++..+-. |...+
T Consensus 87 ~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~-W~~~f 130 (171)
T 1juq_A 87 NEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS-WTMAL 130 (171)
T ss_dssp HHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHH-HHHHC
T ss_pred HHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH-HHHHc
Confidence 45777888888877654 36899988876655 55543
No 112
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=26.36 E-value=1.3e+02 Score=28.81 Aligned_cols=52 Identities=12% Similarity=0.189 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhCCcCcccc------HHHHHHHHhhccccchHhHHHHHHHhhcchHh
Q 001247 627 SCMDILGILARFSPLLLGGT------EEELVNLLKEENEIIKEGILHVLAKAGGTIRE 678 (1115)
Q Consensus 627 ~a~~LL~~iS~~~P~lf~~~------~~~L~~~l~~~~~~~~~~~L~~L~~~~~~~~~ 678 (1115)
.|+.||..+.+.+..-|... .++|++++...++.+...++..+..|+..++.
T Consensus 61 ~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 61 QALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 45566666666666655543 25666666555556777888888888765443
No 113
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=24.96 E-value=1.4e+02 Score=33.27 Aligned_cols=27 Identities=11% Similarity=0.255 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhCchhhhhh--hhhhhccc
Q 001247 245 YHEVIYDVYRCSPQILSGV--VPYLTGEL 271 (1115)
Q Consensus 245 ~h~li~el~~~~P~lL~~V--ip~Le~eL 271 (1115)
.+.++.+||+.+.+.+..+ +|.....|
T Consensus 237 f~rvL~~lW~~~l~~l~~~i~lP~~~~~~ 265 (341)
T 3swh_A 237 LKRVLKELWKLVMNTMERTIVLPPEFSKL 265 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhhh
Confidence 5789999999999999984 57775554
No 114
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=23.72 E-value=1.3e+02 Score=29.34 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhCCcCccccH------HHHHHHHhhc------cccchHhHHHHHHHhhcchH
Q 001247 626 QSCMDILGILARFSPLLLGGTE------EELVNLLKEE------NEIIKEGILHVLAKAGGTIR 677 (1115)
Q Consensus 626 ~~a~~LL~~iS~~~P~lf~~~~------~~L~~~l~~~------~~~~~~~~L~~L~~~~~~~~ 677 (1115)
-.|+.||..+.+.+...|...+ ++|++++... ++.+...+|..+..|+..++
T Consensus 66 l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (149)
T 3g2s_A 66 IQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 129 (149)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4566677777777777776653 6777777542 23466778888888886543
No 115
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=23.66 E-value=1.2e+02 Score=35.24 Aligned_cols=115 Identities=12% Similarity=0.036 Sum_probs=71.2
Q ss_pred chhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHh---hCCcC---c--cccHHHHHHHHhhccccchHhHHHHHHHhh
Q 001247 602 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILAR---FSPLL---L--GGTEEELVNLLKEENEIIKEGILHVLAKAG 673 (1115)
Q Consensus 602 n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~---~~P~l---f--~~~~~~L~~~l~~~~~~~~~~~L~~L~~~~ 673 (1115)
..-.|+.|++.+....+.+.......|...|..+|. .+|+. + .+-+..|+++|...+..+...++.+|.+++
T Consensus 328 ~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 328 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp STTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 445677777765432111110123456677778876 34442 1 123578888888776667888888998876
Q ss_pred cchHhhhh-cccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCC
Q 001247 674 GTIREQLA-ATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKD 716 (1115)
Q Consensus 674 ~~~~~~~~-~~~~~l~~~L~~la~~Gtp~~AK~Av~~L~~~~~~ 716 (1115)
..-+++.. -.+...++.|.++-..|+++..+.|..+|..+...
T Consensus 408 ~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp SSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 32122211 12335678888888889998888888888766543
No 116
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=22.64 E-value=1.1e+02 Score=29.90 Aligned_cols=87 Identities=11% Similarity=0.103 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh------ccccchHhHHHHHH
Q 001247 603 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE------ENEIIKEGILHVLA 670 (1115)
Q Consensus 603 ~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~------~~L~~~l~~------~~~~~~~~~L~~L~ 670 (1115)
++.+..|.+++. .+|....-.|+.||..+.+.+...|...+ ++|++++.. .++.+...+|..+.
T Consensus 37 k~a~rai~krl~----~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (148)
T 1mhq_A 37 THAPWLLAHKIQ----SPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILF 112 (148)
T ss_dssp HHHHHHHHHHHT----CSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHH
Q ss_pred HhhcchHhhhhcccchHHHHHHHHhhcC
Q 001247 671 KAGGTIREQLAATSSSVDLLLERLCLEG 698 (1115)
Q Consensus 671 ~~~~~~~~~~~~~~~~l~~~L~~la~~G 698 (1115)
.|+..++..+. +...-+.+-..|
T Consensus 113 ~W~~~f~~~p~-----i~~~y~~Lk~~G 135 (148)
T 1mhq_A 113 SWTVWFPEDIK-----IRDAYQMLKKQG 135 (148)
T ss_dssp HHHHHCTTCHH-----HHHHHHHHHHTT
T ss_pred HHHHHcCCCch-----HHHHHHHHHHcC
No 117
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=22.47 E-value=8.2e+02 Score=27.08 Aligned_cols=179 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHHHHh---hcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCchHHHHHHHHHHHHhhc
Q 001247 215 QCAGKLEAGIKQFLVSS---MSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 291 (1115)
Q Consensus 215 ~~~~~l~~~i~~~~~~~---l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s 291 (1115)
+..+|.+--++.++..+ +.|++.........+.|..|+++. +++..|=.-|..=+-+.|..++..++.++.
T Consensus 34 ~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~------dll~~Li~~l~~L~fE~RKd~~~if~~llr 107 (341)
T 1upk_A 34 KKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNS------GLLSTLVADLQLIDFEGKKDVAQIFNNILR 107 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHH------SHHHHHHHTGGGSCHHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh------CHHHHHHHhcccCCchhhccHHHHHHHHHh
Q ss_pred CC------CCChhhhcHHHHHHHHhcccCCChhHHHHHH-----------------------------------------
Q 001247 292 VP------GSANNEQFHSVFSEFLKRLTDRIVAVRMSVL----------------------------------------- 324 (1115)
Q Consensus 292 ~~------~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v----------------------------------------- 324 (1115)
.. ..+....||++....+.=..+.+...-...+
T Consensus 108 ~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~T 187 (341)
T 1upk_A 108 RQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFAT 187 (341)
T ss_dssp CCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHH
T ss_pred cccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHH
Q ss_pred ---------HHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHh-------hhhhcCCCCHHHHHHHHHh
Q 001247 325 ---------EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDV-------ACHALNSIPVETVKLVAER 388 (1115)
Q Consensus 325 ---------~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~l-------a~~~l~~v~~~~l~~l~eR 388 (1115)
+.+..+|.+|-+ .....+...|.-+.--.|+++++-++++ ....--.-+.+-|+.+--.
T Consensus 188 fkelLt~Hk~lvaefL~~nyd-----~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~L 262 (341)
T 1upk_A 188 FKDLLTRHKLLSAEFLEQHYD-----RFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNL 262 (341)
T ss_dssp HHHHHHSSHHHHHHHHHHTHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHhHH-----HHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHH
Q ss_pred hccCChhHHHHHHHHH
Q 001247 389 LRDKSVLVKRYTMERL 404 (1115)
Q Consensus 389 ~rDKk~~VR~~Ai~~L 404 (1115)
+|||...|+-||....
T Consensus 263 L~d~sk~Iq~EAFhVF 278 (341)
T 1upk_A 263 LRDKSRNIQFEAFHVF 278 (341)
T ss_dssp TTCSCHHHHHHHHHHH
T ss_pred hcCchhchhhhhhhhe
No 118
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=22.40 E-value=41 Score=41.24 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=53.7
Q ss_pred hhhhhhhccccCCchHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChH
Q 001247 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAP 341 (1115)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~ 341 (1115)
.++|.|+. |++.+...|..|...|+.+..++ +-|...++. .
T Consensus 35 ~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~------------------------~~~~l~~~~--------------~ 75 (684)
T 4gmo_A 35 KILPVLKD-LKSPDAKSRTTAAGAIANIVQDA------------------------KCRKLLLRE--------------Q 75 (684)
T ss_dssp TTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSH------------------------HHHHHHHHT--------------T
T ss_pred hHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCc------------------------HHHHHHHHc--------------C
Confidence 46677764 99999999999999999987532 222222211 1
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh
Q 001247 342 QILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1115)
Q Consensus 342 ~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~ 373 (1115)
-|...+...|.|++..||.+|..++..++...
T Consensus 76 ~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 76 VVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 24445677899999999999999999988653
No 119
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.02 E-value=4.2e+02 Score=27.39 Aligned_cols=102 Identities=12% Similarity=0.156 Sum_probs=64.7
Q ss_pred HHHHHHhcccCCCh-hHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-----cCCC
Q 001247 304 VFSEFLKRLTDRIV-AVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-----LNSI 377 (1115)
Q Consensus 304 ~~~~fL~R~~D~s~-~VR~~~v~~~~~il~~~~~~~~~~~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~-----l~~v 377 (1115)
.|..++.|..|-.- +.=...+-.+-+++.+.+. ...+.+.+|.+||...++.|-+.|+..+..+.... ....
T Consensus 8 ~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~--~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eia 85 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETDWESILQICDLIRQGDT--QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVA 85 (226)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHS
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhc
Confidence 56677777766542 1112222233344555443 46899999999999999999999999888776533 2234
Q ss_pred CHHHHHHHHHhhcc-CChhHHHHHHHHHHHH
Q 001247 378 PVETVKLVAERLRD-KSVLVKRYTMERLADI 407 (1115)
Q Consensus 378 ~~~~l~~l~eR~rD-Kk~~VR~~Ai~~L~~l 407 (1115)
+.+.+..|...+.. ....||+.++..+-.-
T Consensus 86 s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W 116 (226)
T 3zyq_A 86 NKQTMEELKDLLKRQVEVNVRNKILYLIQAW 116 (226)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 66666555444432 2357998887766443
No 120
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=21.11 E-value=65 Score=27.78 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=23.6
Q ss_pred HHHHHhhcCC-CCCCCc---hHHHHHHHHHHHh
Q 001247 80 ICEITRITAP-EAPYSD---DVLKDIFQLIVGT 108 (1115)
Q Consensus 80 l~dilRi~AP-daPy~~---~~lkdif~l~~~~ 108 (1115)
|..+||.++| ++||+. +||++...-.++.
T Consensus 28 Ih~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e 60 (74)
T 1ldd_A 28 IHSFLKITVPKDWGYNRITLQQLEGYLNTLADE 60 (74)
T ss_dssp HHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhC
Confidence 5678999998 578976 8999988877774
No 121
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=20.47 E-value=70 Score=39.17 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh--cC-CCCHHHHHH-HHHhhccCChhHHHHHHHHHHHHHH
Q 001247 342 QILTALCDRLLDFDENVRKQVVAVICDVACHA--LN-SIPVETVKL-VAERLRDKSVLVKRYTMERLADIFR 409 (1115)
Q Consensus 342 ~l~~~l~~rL~D~DekVR~aaV~~i~~la~~~--l~-~v~~~~l~~-l~eR~rDKk~~VR~~Ai~~L~~ly~ 409 (1115)
.|.+-| ++|..+|.++|..||.+++.++... .. .+....+.. +...+.|....||.+|.-.|.+|=.
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 444544 4699999999999999999987421 00 112233444 4666899999999999999988744
Done!