Query 001248
Match_columns 1114
No_of_seqs 825 out of 4693
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 19:48:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 4.1E-64 8.9E-69 499.8 35.9 457 5-659 17-480 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 2.9E-64 6.4E-69 484.5 31.5 459 5-657 7-475 (508)
3 KOG0319 WD40-repeat-containing 100.0 3.9E-56 8.4E-61 475.9 45.7 574 364-1081 25-622 (775)
4 KOG0319 WD40-repeat-containing 100.0 2.7E-55 5.9E-60 469.4 44.7 546 357-1026 61-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 2.3E-50 4.9E-55 414.7 60.3 579 359-1078 19-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 3.8E-50 8.3E-55 429.7 61.6 571 353-1079 50-710 (893)
7 KOG0271 Notchless-like WD40 re 100.0 2.2E-53 4.8E-58 419.4 25.7 374 343-930 100-479 (480)
8 KOG0318 WD40 repeat stress pro 100.0 1.4E-48 2.9E-53 401.6 56.3 541 350-1025 51-602 (603)
9 KOG0306 WD40-repeat-containing 100.0 2.4E-48 5.3E-53 415.7 46.4 605 367-1079 31-665 (888)
10 KOG0306 WD40-repeat-containing 100.0 2.1E-47 4.6E-52 408.5 48.9 514 357-1030 64-669 (888)
11 KOG0271 Notchless-like WD40 re 100.0 1.5E-49 3.2E-54 392.4 29.9 367 415-1023 110-479 (480)
12 KOG0291 WD40-repeat-containing 100.0 2.1E-45 4.5E-50 393.5 60.2 546 362-1087 18-623 (893)
13 KOG1408 WD40 repeat protein [F 100.0 4E-45 8.7E-50 387.2 41.4 627 361-1110 40-750 (1080)
14 KOG1408 WD40 repeat protein [F 100.0 5.5E-41 1.2E-45 355.9 40.6 546 357-1027 77-715 (1080)
15 KOG0273 Beta-transducin family 100.0 1.2E-40 2.5E-45 339.0 33.6 357 346-932 166-523 (524)
16 KOG1539 WD repeat protein [Gen 100.0 8.4E-37 1.8E-41 331.8 55.8 586 364-1079 39-649 (910)
17 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-40 3.8E-45 333.5 22.7 285 463-930 173-458 (459)
18 KOG0272 U4/U6 small nuclear ri 100.0 7.7E-40 1.7E-44 328.9 23.8 285 354-779 171-458 (459)
19 KOG0286 G-protein beta subunit 100.0 3.6E-38 7.8E-43 301.7 32.7 292 352-779 48-343 (343)
20 KOG1063 RNA polymerase II elon 100.0 5E-36 1.1E-40 319.3 47.3 586 354-1078 50-763 (764)
21 KOG0276 Vesicle coat complex C 100.0 4.6E-36 1E-40 315.0 44.3 464 357-1023 12-488 (794)
22 KOG1539 WD repeat protein [Gen 100.0 4.9E-35 1.1E-39 318.1 50.4 543 357-1024 75-647 (910)
23 KOG0279 G protein beta subunit 100.0 2.8E-36 6E-41 287.3 31.6 258 352-655 8-268 (315)
24 KOG1063 RNA polymerase II elon 100.0 6.5E-35 1.4E-39 310.8 42.9 549 362-1078 18-699 (764)
25 KOG0279 G protein beta subunit 100.0 5.9E-36 1.3E-40 285.1 30.9 297 748-1079 12-314 (315)
26 KOG2106 Uncharacterized conser 100.0 1.7E-34 3.6E-39 296.0 43.4 508 351-1077 97-625 (626)
27 KOG0296 Angio-associated migra 100.0 2.5E-35 5.4E-40 291.2 34.7 339 415-932 59-398 (399)
28 KOG0286 G-protein beta subunit 100.0 2E-35 4.4E-40 283.0 32.5 285 459-930 49-343 (343)
29 KOG0292 Vesicle coat complex C 100.0 7.7E-34 1.7E-38 309.3 47.6 490 357-1023 8-516 (1202)
30 KOG0263 Transcription initiati 100.0 7.3E-36 1.6E-40 325.1 31.7 275 345-650 364-651 (707)
31 KOG0284 Polyadenylation factor 100.0 1.1E-36 2.5E-41 304.4 21.1 349 281-781 22-380 (464)
32 KOG0276 Vesicle coat complex C 100.0 1E-33 2.2E-38 297.4 43.5 468 416-1079 9-491 (794)
33 KOG0295 WD40 repeat-containing 100.0 3.2E-35 7E-40 290.1 25.2 271 351-657 101-372 (406)
34 KOG0315 G-protein beta subunit 100.0 3.4E-34 7.4E-39 268.0 29.5 230 372-650 11-247 (311)
35 KOG0315 G-protein beta subunit 100.0 7.7E-34 1.7E-38 265.6 29.3 281 588-1034 12-297 (311)
36 KOG0273 Beta-transducin family 100.0 1.6E-33 3.6E-38 287.1 30.1 279 750-1078 234-523 (524)
37 KOG0296 Angio-associated migra 100.0 5.9E-33 1.3E-37 274.4 33.0 330 353-890 59-398 (399)
38 KOG0295 WD40 repeat-containing 100.0 6.7E-34 1.4E-38 280.8 24.4 301 415-931 103-405 (406)
39 KOG0293 WD40 repeat-containing 100.0 1.2E-33 2.5E-38 282.7 23.7 293 415-891 219-514 (519)
40 KOG2048 WD40 repeat protein [G 100.0 1.2E-29 2.7E-34 270.7 54.6 547 357-1077 24-600 (691)
41 KOG2048 WD40 repeat protein [G 100.0 3.6E-30 7.8E-35 274.8 50.4 502 421-1081 26-551 (691)
42 KOG0645 WD40 repeat protein [G 100.0 5.4E-32 1.2E-36 256.9 32.5 246 353-648 9-261 (312)
43 KOG0265 U5 snRNP-specific prot 100.0 2.3E-32 5.1E-37 263.3 29.1 291 414-887 41-335 (338)
44 KOG0263 Transcription initiati 100.0 1.9E-33 4.1E-38 306.4 23.1 274 750-1081 377-652 (707)
45 KOG0285 Pleiotropic regulator 100.0 1E-32 2.2E-37 271.1 25.8 252 347-650 139-391 (460)
46 KOG0292 Vesicle coat complex C 100.0 1.5E-30 3.2E-35 283.9 45.0 449 416-1034 5-488 (1202)
47 KOG0265 U5 snRNP-specific prot 100.0 4.3E-32 9.3E-37 261.5 27.8 256 348-650 37-298 (338)
48 KOG0285 Pleiotropic regulator 100.0 4E-32 8.8E-37 266.8 26.3 294 415-848 146-440 (460)
49 KOG0284 Polyadenylation factor 100.0 1.4E-32 2.9E-37 275.3 21.1 285 750-1081 95-383 (464)
50 KOG2106 Uncharacterized conser 100.0 4.8E-30 1E-34 263.4 39.9 432 351-931 146-625 (626)
51 KOG0645 WD40 repeat protein [G 100.0 3.5E-31 7.5E-36 251.5 28.7 293 748-1078 11-311 (312)
52 KOG0282 mRNA splicing factor [ 100.0 2.8E-32 6.2E-37 279.5 20.2 290 415-888 209-503 (503)
53 KOG0316 Conserved WD40 repeat- 100.0 3.9E-31 8.5E-36 245.3 24.9 252 347-650 5-259 (307)
54 KOG0266 WD40 repeat-containing 100.0 6.8E-31 1.5E-35 299.5 31.8 289 750-1078 158-454 (456)
55 KOG0281 Beta-TrCP (transducin 100.0 2.5E-32 5.4E-37 266.8 16.5 232 357-650 196-430 (499)
56 KOG0266 WD40 repeat-containing 100.0 2.1E-30 4.6E-35 295.4 32.4 256 357-659 158-419 (456)
57 KOG0316 Conserved WD40 repeat- 100.0 4.2E-30 9.1E-35 238.5 25.2 213 414-661 11-225 (307)
58 KOG0282 mRNA splicing factor [ 100.0 5.9E-31 1.3E-35 269.9 21.2 291 499-930 204-503 (503)
59 KOG1445 Tumor-specific antigen 100.0 9.8E-29 2.1E-33 259.7 38.0 625 351-1029 72-848 (1012)
60 KOG0278 Serine/threonine kinas 100.0 1.2E-30 2.5E-35 244.2 17.6 289 415-936 9-301 (334)
61 PLN00181 protein SPA1-RELATED; 100.0 1.8E-28 3.9E-33 302.5 39.2 310 380-931 457-792 (793)
62 KOG0281 Beta-TrCP (transducin 100.0 7.4E-31 1.6E-35 256.6 14.0 234 817-1081 196-431 (499)
63 KOG0643 Translation initiation 100.0 2.3E-29 5E-34 238.3 23.0 294 415-933 5-318 (327)
64 cd00200 WD40 WD40 domain, foun 100.0 3.4E-28 7.5E-33 266.1 36.2 285 460-930 4-289 (289)
65 KOG0275 Conserved WD40 repeat- 100.0 6.7E-30 1.5E-34 247.4 19.1 291 750-1076 212-507 (508)
66 cd00200 WD40 WD40 domain, foun 100.0 3.9E-28 8.5E-33 265.6 35.8 245 356-650 7-251 (289)
67 PLN00181 protein SPA1-RELATED; 100.0 3.2E-28 7E-33 300.2 36.8 297 749-1077 481-792 (793)
68 KOG1445 Tumor-specific antigen 100.0 4.6E-27 9.9E-32 247.2 33.7 626 415-1091 74-857 (1012)
69 KOG0278 Serine/threonine kinas 100.0 6.3E-29 1.4E-33 232.6 17.1 296 746-1090 9-311 (334)
70 KOG0640 mRNA cleavage stimulat 100.0 1.6E-27 3.6E-32 229.9 27.1 268 354-650 108-385 (430)
71 KOG0310 Conserved WD40 repeat- 100.0 4.5E-27 9.7E-32 242.2 27.9 286 750-1081 25-312 (487)
72 KOG0313 Microtubule binding pr 100.0 4.4E-27 9.4E-32 234.1 26.6 258 348-657 95-385 (423)
73 KOG1407 WD40 repeat protein [F 100.0 7.3E-27 1.6E-31 220.8 26.5 276 460-923 15-293 (313)
74 KOG0641 WD40 repeat protein [G 100.0 5.4E-26 1.2E-30 209.4 30.2 276 350-650 24-305 (350)
75 KOG0313 Microtubule binding pr 100.0 4.5E-27 9.8E-32 234.0 24.8 303 416-889 101-417 (423)
76 KOG0288 WD40 repeat protein Ti 100.0 5.1E-28 1.1E-32 243.2 18.2 260 345-655 161-423 (459)
77 KOG0299 U3 snoRNP-associated p 100.0 1.2E-26 2.5E-31 237.1 26.5 269 351-655 135-417 (479)
78 KOG0973 Histone transcription 100.0 5.2E-27 1.1E-31 265.5 25.8 304 750-1081 12-358 (942)
79 KOG0643 Translation initiation 100.0 5.5E-26 1.2E-30 215.5 28.2 234 353-638 5-251 (327)
80 KOG0310 Conserved WD40 repeat- 100.0 1.4E-26 3E-31 238.6 25.7 248 355-650 23-270 (487)
81 KOG0274 Cdc4 and related F-box 100.0 4E-26 8.6E-31 257.6 30.8 243 356-657 206-449 (537)
82 KOG1407 WD40 repeat protein [F 100.0 4.8E-26 1.1E-30 215.3 25.7 278 415-881 15-293 (313)
83 KOG0283 WD40 repeat-containing 100.0 1.4E-26 3.1E-31 255.4 25.4 276 749-1028 265-579 (712)
84 KOG0277 Peroxisomal targeting 99.9 1.8E-26 3.9E-31 217.2 21.5 287 362-731 12-308 (311)
85 KOG0283 WD40 repeat-containing 99.9 1.1E-26 2.3E-31 256.4 23.5 272 356-650 265-578 (712)
86 KOG1446 Histone H3 (Lys4) meth 99.9 3.2E-25 7E-30 217.1 30.6 253 817-1088 13-272 (311)
87 KOG0772 Uncharacterized conser 99.9 3.4E-26 7.3E-31 235.9 24.4 296 748-1077 164-486 (641)
88 KOG0288 WD40 repeat protein Ti 99.9 3.6E-27 7.9E-32 237.1 16.8 286 415-887 170-458 (459)
89 PTZ00421 coronin; Provisional 99.9 4.9E-25 1.1E-29 249.1 36.0 299 751-1080 20-333 (493)
90 KOG2096 WD40 repeat protein [G 99.9 1.7E-25 3.7E-30 217.1 27.3 304 616-1023 84-400 (420)
91 KOG0640 mRNA cleavage stimulat 99.9 1.5E-26 3.2E-31 223.4 19.3 247 750-1024 171-425 (430)
92 KOG1446 Histone H3 (Lys4) meth 99.9 1.1E-24 2.4E-29 213.4 32.3 288 460-933 9-304 (311)
93 KOG0308 Conserved WD40 repeat- 99.9 1.8E-26 4E-31 244.8 21.5 253 357-650 20-287 (735)
94 KOG0274 Cdc4 and related F-box 99.9 2.1E-25 4.6E-30 251.7 30.6 295 418-910 206-503 (537)
95 KOG0277 Peroxisomal targeting 99.9 3.1E-26 6.7E-31 215.6 18.9 252 351-647 53-308 (311)
96 KOG0973 Histone transcription 99.9 1.5E-25 3.2E-30 253.7 26.0 280 357-650 12-357 (942)
97 KOG0647 mRNA export protein (c 99.9 6.5E-25 1.4E-29 212.2 26.1 248 356-649 25-282 (347)
98 KOG0772 Uncharacterized conser 99.9 1.5E-25 3.2E-30 231.2 22.9 311 616-1034 165-500 (641)
99 KOG0294 WD40 repeat-containing 99.9 1.2E-24 2.7E-29 211.5 26.8 240 816-1081 41-284 (362)
100 PTZ00421 coronin; Provisional 99.9 2.2E-24 4.8E-29 243.9 32.8 264 357-651 19-293 (493)
101 KOG0305 Anaphase promoting com 99.9 4.1E-25 8.8E-30 238.5 25.0 255 345-650 203-463 (484)
102 KOG0305 Anaphase promoting com 99.9 8.5E-25 1.8E-29 236.0 27.1 275 362-781 181-461 (484)
103 KOG2096 WD40 repeat protein [G 99.9 3.1E-24 6.7E-29 208.4 27.7 315 413-888 79-400 (420)
104 KOG0300 WD40 repeat-containing 99.9 8E-25 1.7E-29 211.9 22.4 251 351-650 140-430 (481)
105 KOG0299 U3 snoRNP-associated p 99.9 1.8E-24 3.9E-29 221.2 25.6 293 415-837 137-444 (479)
106 KOG0308 Conserved WD40 repeat- 99.9 1.8E-25 3.9E-30 237.4 18.8 372 419-1033 20-401 (735)
107 KOG0641 WD40 repeat protein [G 99.9 2.2E-23 4.7E-28 192.3 29.8 308 750-1078 31-349 (350)
108 KOG0647 mRNA export protein (c 99.9 2.9E-24 6.2E-29 207.8 25.2 207 416-650 23-230 (347)
109 KOG0289 mRNA splicing factor [ 99.9 3.1E-24 6.8E-29 217.2 26.4 242 750-1024 260-505 (506)
110 PTZ00420 coronin; Provisional 99.9 1.1E-23 2.3E-28 238.6 32.4 224 838-1081 53-296 (568)
111 KOG0268 Sof1-like rRNA process 99.9 3.7E-25 8.1E-30 218.8 17.8 286 416-851 62-349 (433)
112 PTZ00420 coronin; Provisional 99.9 7.4E-24 1.6E-28 239.9 30.8 235 377-650 50-295 (568)
113 KOG0264 Nucleosome remodeling 99.9 1.3E-24 2.8E-29 222.9 22.1 268 351-649 117-405 (422)
114 KOG0300 WD40 repeat-containing 99.9 1.4E-24 2.9E-29 210.3 20.8 201 817-1027 271-478 (481)
115 KOG0301 Phospholipase A2-activ 99.9 4E-24 8.6E-29 229.1 26.3 240 352-648 7-249 (745)
116 KOG1963 WD40 repeat protein [G 99.9 1.8E-22 4E-27 223.6 39.7 517 424-1084 20-589 (792)
117 KOG0289 mRNA splicing factor [ 99.9 1.1E-23 2.5E-28 213.2 26.9 281 467-931 221-505 (506)
118 KOG0301 Phospholipase A2-activ 99.9 1.5E-23 3.2E-28 224.9 25.6 276 748-1079 11-289 (745)
119 KOG0268 Sof1-like rRNA process 99.9 1.6E-24 3.5E-29 214.3 15.2 243 353-650 61-304 (433)
120 KOG0294 WD40 repeat-containing 99.9 1.8E-22 3.9E-27 196.6 28.6 247 457-892 35-283 (362)
121 KOG0639 Transducin-like enhanc 99.9 8.8E-23 1.9E-27 209.8 27.0 271 325-650 393-665 (705)
122 KOG1332 Vesicle coat complex C 99.9 9.6E-24 2.1E-28 197.8 18.2 256 357-648 10-286 (299)
123 KOG1274 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 224.3 29.0 285 749-1075 11-297 (933)
124 KOG0639 Transducin-like enhanc 99.9 4.5E-23 9.8E-28 211.9 22.1 282 750-1077 418-703 (705)
125 KOG1332 Vesicle coat complex C 99.9 3.7E-23 8E-28 193.9 19.0 222 415-648 6-241 (299)
126 KOG1963 WD40 repeat protein [G 99.9 1.1E-20 2.3E-25 209.8 41.7 513 362-1032 20-590 (792)
127 KOG0646 WD40 repeat protein [G 99.9 1.2E-22 2.7E-27 208.4 24.0 232 400-662 64-320 (476)
128 KOG4283 Transcription-coupled 99.9 6.7E-22 1.4E-26 190.2 25.8 242 353-654 38-282 (397)
129 KOG1036 Mitotic spindle checkp 99.9 9.6E-22 2.1E-26 191.6 27.2 242 357-650 12-264 (323)
130 KOG1273 WD40 repeat protein [G 99.9 7.8E-22 1.7E-26 191.7 25.0 295 423-891 26-323 (405)
131 KOG2055 WD40 repeat protein [G 99.9 9.5E-22 2.1E-26 201.1 26.2 249 750-1025 256-512 (514)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-20 2.3E-25 208.4 36.9 205 823-1034 77-288 (300)
133 KOG0646 WD40 repeat protein [G 99.9 3.1E-22 6.8E-27 205.4 22.1 296 483-913 11-330 (476)
134 KOG4283 Transcription-coupled 99.9 1E-21 2.3E-26 188.9 24.2 307 749-1079 41-366 (397)
135 KOG0321 WD40 repeat-containing 99.9 2.7E-22 5.8E-27 213.0 21.2 435 426-1027 55-533 (720)
136 KOG1036 Mitotic spindle checkp 99.9 4.7E-21 1E-25 186.8 27.3 283 417-880 10-294 (323)
137 KOG0264 Nucleosome remodeling 99.9 4.1E-22 9E-27 204.6 19.4 233 350-604 169-404 (422)
138 KOG1274 WD40 repeat protein [G 99.9 2.6E-18 5.7E-23 191.0 50.3 254 355-649 10-263 (933)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.5E-20 1.2E-24 202.7 36.8 294 432-912 1-300 (300)
140 KOG0650 WD40 repeat nucleolar 99.9 3.4E-21 7.4E-26 202.9 24.6 314 458-929 393-732 (733)
141 KOG1273 WD40 repeat protein [G 99.9 1.4E-20 2.9E-25 183.1 26.7 276 346-650 12-324 (405)
142 KOG2055 WD40 repeat protein [G 99.9 6.1E-21 1.3E-25 195.3 24.5 247 357-649 212-468 (514)
143 KOG1538 Uncharacterized conser 99.9 1.6E-20 3.6E-25 199.3 27.5 455 422-977 14-520 (1081)
144 KOG1538 Uncharacterized conser 99.9 7.1E-20 1.5E-24 194.6 30.5 253 360-649 14-294 (1081)
145 KOG2445 Nuclear pore complex c 99.9 6.8E-20 1.5E-24 178.1 26.9 268 462-933 10-319 (361)
146 KOG0267 Microtubule severing p 99.9 2E-22 4.3E-27 216.9 10.4 232 817-1070 27-260 (825)
147 KOG0321 WD40 repeat-containing 99.9 1.4E-20 3.1E-25 200.0 22.6 290 764-1081 65-394 (720)
148 KOG0267 Microtubule severing p 99.9 5.9E-22 1.3E-26 213.4 11.3 205 416-650 24-228 (825)
149 KOG0269 WD40 repeat-containing 99.9 9.3E-21 2E-25 206.0 17.9 283 714-1027 51-342 (839)
150 KOG0650 WD40 repeat nucleolar 99.9 1.4E-19 3.1E-24 190.7 25.4 322 568-1022 395-732 (733)
151 KOG4328 WD40 protein [Function 99.9 1.1E-19 2.3E-24 186.2 23.1 254 357-650 185-452 (498)
152 KOG0269 WD40 repeat-containing 99.8 3.6E-20 7.8E-25 201.5 20.3 293 752-1081 40-343 (839)
153 KOG2445 Nuclear pore complex c 99.8 6.7E-19 1.5E-23 171.3 26.7 259 356-648 11-318 (361)
154 KOG0302 Ribosome Assembly prot 99.8 1.2E-19 2.6E-24 181.1 21.8 267 347-641 140-432 (440)
155 KOG1009 Chromatin assembly com 99.8 4.1E-19 8.9E-24 179.4 24.4 171 357-541 12-195 (434)
156 COG2319 FOG: WD40 repeat [Gene 99.8 4.4E-17 9.5E-22 190.5 46.1 371 353-933 60-443 (466)
157 KOG4328 WD40 protein [Function 99.8 3.9E-19 8.5E-24 182.1 23.9 295 750-1078 185-495 (498)
158 KOG1034 Transcriptional repres 99.8 1.9E-19 4.1E-24 176.6 20.5 298 749-1078 36-383 (385)
159 KOG0270 WD40 repeat-containing 99.8 1.3E-19 2.8E-24 185.2 19.4 256 370-656 192-457 (463)
160 KOG4378 Nuclear protein COP1 [ 99.8 3.6E-19 7.7E-24 183.4 21.9 212 761-1007 89-305 (673)
161 KOG4378 Nuclear protein COP1 [ 99.8 5.9E-19 1.3E-23 181.8 22.6 292 717-1057 5-303 (673)
162 KOG0270 WD40 repeat-containing 99.8 8.2E-19 1.8E-23 179.3 23.4 196 431-650 191-406 (463)
163 KOG0302 Ribosome Assembly prot 99.8 6.5E-19 1.4E-23 175.9 19.6 224 349-597 202-432 (440)
164 COG2319 FOG: WD40 repeat [Gene 99.8 3.3E-16 7.2E-21 183.1 46.0 369 460-1026 60-443 (466)
165 KOG1034 Transcriptional repres 99.8 4.7E-19 1E-23 173.9 16.9 258 357-648 88-383 (385)
166 KOG0307 Vesicle coat complex C 99.8 2.6E-19 5.7E-24 204.3 15.4 280 318-650 38-329 (1049)
167 KOG1524 WD40 repeat-containing 99.8 1.1E-16 2.4E-21 166.7 31.4 506 356-1081 12-526 (737)
168 KOG2919 Guanine nucleotide-bin 99.8 2.6E-17 5.6E-22 161.2 25.0 227 761-1016 121-361 (406)
169 KOG1009 Chromatin assembly com 99.8 2.3E-17 4.9E-22 167.0 23.7 302 751-1081 13-375 (434)
170 KOG2919 Guanine nucleotide-bin 99.8 3.7E-17 8E-22 160.1 22.7 274 468-924 52-362 (406)
171 KOG0322 G-protein beta subunit 99.8 1.2E-17 2.5E-22 159.1 18.2 308 500-931 5-322 (323)
172 KOG1912 WD40 repeat protein [G 99.8 3E-16 6.6E-21 170.6 30.7 505 357-1004 14-572 (1062)
173 KOG4497 Uncharacterized conser 99.8 4.6E-17 9.9E-22 159.6 21.8 405 363-925 13-425 (447)
174 KOG1310 WD40 repeat protein [G 99.8 4.5E-17 9.8E-22 170.1 23.0 168 459-648 44-231 (758)
175 KOG0303 Actin-binding protein 99.8 6.8E-17 1.5E-21 162.5 20.6 217 414-659 75-305 (472)
176 KOG0649 WD40 repeat protein [G 99.7 2.1E-15 4.6E-20 141.9 27.4 289 753-1076 12-314 (325)
177 KOG1912 WD40 repeat protein [G 99.7 2.9E-15 6.3E-20 163.1 32.2 600 348-1030 44-746 (1062)
178 PRK11028 6-phosphogluconolacto 99.7 1.7E-15 3.6E-20 168.1 31.3 279 717-1029 5-310 (330)
179 KOG2110 Uncharacterized conser 99.7 1.8E-15 4E-20 151.7 27.6 241 818-1081 5-251 (391)
180 KOG4497 Uncharacterized conser 99.7 5E-16 1.1E-20 152.5 22.9 344 579-1071 13-425 (447)
181 KOG0307 Vesicle coat complex C 99.7 3.6E-17 7.8E-22 187.1 16.9 278 721-1028 36-330 (1049)
182 KOG0303 Actin-binding protein 99.7 2.2E-16 4.8E-21 158.9 20.3 246 347-630 70-321 (472)
183 KOG0322 G-protein beta subunit 99.7 1.7E-16 3.7E-21 151.3 18.4 303 458-889 7-322 (323)
184 KOG1188 WD40 repeat protein [G 99.7 2.1E-16 4.6E-21 156.5 19.4 198 373-613 42-251 (376)
185 KOG1188 WD40 repeat protein [G 99.7 3.1E-16 6.6E-21 155.4 20.2 151 481-650 42-198 (376)
186 KOG1007 WD repeat protein TSSC 99.7 5E-16 1.1E-20 149.9 20.9 257 355-647 60-360 (370)
187 KOG1517 Guanine nucleotide bin 99.7 6.5E-16 1.4E-20 173.7 24.9 320 442-893 1050-1384(1387)
188 PRK11028 6-phosphogluconolacto 99.7 6.8E-15 1.5E-19 163.2 31.9 250 819-1084 35-310 (330)
189 KOG4227 WD40 repeat protein [G 99.7 1E-15 2.2E-20 153.3 22.2 168 460-650 51-227 (609)
190 KOG0642 Cell-cycle nuclear pro 99.7 1.2E-16 2.5E-21 168.7 16.4 229 415-650 289-563 (577)
191 KOG0644 Uncharacterized conser 99.7 3.7E-17 8E-22 179.0 13.0 282 460-936 185-472 (1113)
192 KOG4227 WD40 repeat protein [G 99.7 1.4E-15 3.1E-20 152.2 22.6 319 415-846 51-386 (609)
193 KOG1007 WD repeat protein TSSC 99.7 4.9E-16 1.1E-20 149.9 18.3 228 838-1079 39-290 (370)
194 KOG1524 WD40 repeat-containing 99.7 3.3E-15 7.1E-20 156.0 24.9 207 374-646 78-284 (737)
195 KOG0644 Uncharacterized conser 99.7 4.3E-17 9.4E-22 178.4 11.5 268 349-650 181-470 (1113)
196 KOG2110 Uncharacterized conser 99.7 1.9E-14 4.2E-19 144.5 28.2 260 817-1102 86-356 (391)
197 KOG0642 Cell-cycle nuclear pro 99.7 2.6E-16 5.7E-21 166.1 15.0 250 817-1085 293-568 (577)
198 KOG1517 Guanine nucleotide bin 99.7 5E-15 1.1E-19 166.7 25.5 195 830-1028 1178-1384(1387)
199 KOG1334 WD40 repeat protein [G 99.7 5.2E-16 1.1E-20 160.6 16.2 322 460-893 137-469 (559)
200 KOG1587 Cytoplasmic dynein int 99.7 3.9E-15 8.4E-20 166.9 24.3 260 353-650 237-518 (555)
201 KOG0649 WD40 repeat protein [G 99.7 1.2E-14 2.7E-19 136.9 21.7 254 360-649 12-275 (325)
202 KOG1334 WD40 repeat protein [G 99.7 1.5E-15 3.3E-20 157.2 16.6 306 356-733 140-467 (559)
203 KOG1587 Cytoplasmic dynein int 99.7 2.7E-14 5.9E-19 160.2 27.6 285 442-933 222-517 (555)
204 KOG1832 HIV-1 Vpr-binding prot 99.7 9.9E-17 2.1E-21 176.2 7.6 301 168-636 1012-1319(1516)
205 KOG0771 Prolactin regulatory e 99.7 1.9E-15 4E-20 154.8 15.7 198 822-1026 148-355 (398)
206 KOG0290 Conserved WD40 repeat- 99.6 1.9E-14 4.2E-19 139.3 21.0 246 816-1074 94-361 (364)
207 KOG0771 Prolactin regulatory e 99.6 3.2E-15 7E-20 153.1 16.1 199 863-1079 148-355 (398)
208 KOG0290 Conserved WD40 repeat- 99.6 2.5E-14 5.5E-19 138.4 20.5 252 355-644 93-361 (364)
209 KOG0974 WD-repeat protein WDR6 99.6 4.4E-12 9.6E-17 144.5 40.2 151 364-543 139-290 (967)
210 KOG1240 Protein kinase contain 99.6 2.1E-13 4.6E-18 156.6 29.1 212 415-650 1043-1275(1431)
211 KOG1310 WD40 repeat protein [G 99.6 1.3E-14 2.7E-19 152.1 15.2 239 354-613 46-312 (758)
212 PRK01742 tolB translocation pr 99.6 3.4E-13 7.4E-18 154.1 27.2 226 380-662 183-416 (429)
213 KOG1523 Actin-related protein 99.6 9.1E-14 2E-18 136.8 19.0 252 357-635 9-266 (361)
214 PRK01742 tolB translocation pr 99.6 1.4E-13 2.9E-18 157.4 23.8 221 353-629 198-426 (429)
215 KOG1240 Protein kinase contain 99.6 5.7E-13 1.2E-17 153.2 28.2 269 351-651 1041-1337(1431)
216 KOG2111 Uncharacterized conser 99.6 5.2E-13 1.1E-17 131.7 23.9 242 819-1081 6-259 (346)
217 KOG2659 LisH motif-containing 99.6 1.3E-14 2.8E-19 138.9 12.1 169 4-183 25-205 (228)
218 KOG2394 WD40 protein DMR-N9 [G 99.6 2.6E-13 5.5E-18 142.5 22.5 168 828-1005 183-384 (636)
219 COG4946 Uncharacterized protei 99.6 1.2E-10 2.6E-15 120.7 41.3 145 750-922 358-508 (668)
220 PF02239 Cytochrom_D1: Cytochr 99.6 2.8E-12 6E-17 141.0 31.4 325 525-990 8-356 (369)
221 KOG0974 WD-repeat protein WDR6 99.6 2.5E-11 5.5E-16 138.5 39.0 197 359-606 88-290 (967)
222 KOG1523 Actin-related protein 99.5 8.5E-13 1.8E-17 130.1 21.2 244 817-1078 9-278 (361)
223 PF02239 Cytochrom_D1: Cytochr 99.5 2.8E-12 6E-17 141.0 28.0 321 480-937 7-352 (369)
224 KOG2139 WD40 repeat protein [G 99.5 5.8E-12 1.3E-16 126.1 26.6 285 751-1078 98-431 (445)
225 KOG2139 WD40 repeat protein [G 99.5 8E-12 1.7E-16 125.1 26.2 287 716-1025 112-431 (445)
226 KOG2321 WD40 repeat protein [G 99.5 1.7E-12 3.8E-17 137.4 22.1 257 351-650 44-304 (703)
227 KOG2321 WD40 repeat protein [G 99.5 1.4E-12 3E-17 138.2 21.2 193 824-1027 139-345 (703)
228 KOG2394 WD40 protein DMR-N9 [G 99.5 2.4E-13 5.2E-18 142.7 15.1 155 357-518 218-383 (636)
229 KOG1272 WD40-repeat-containing 99.5 6E-14 1.3E-18 144.6 10.3 189 820-1020 211-404 (545)
230 KOG1272 WD40-repeat-containing 99.5 6.5E-13 1.4E-17 137.1 15.0 262 359-657 130-418 (545)
231 PRK03629 tolB translocation pr 99.4 1.7E-11 3.7E-16 139.6 26.1 221 353-628 193-427 (429)
232 PF10282 Lactonase: Lactonase, 99.4 5.1E-10 1.1E-14 123.9 36.5 208 822-1032 90-331 (345)
233 KOG2041 WD40 repeat protein [G 99.4 4.9E-10 1.1E-14 121.7 34.6 550 357-1025 13-619 (1189)
234 KOG2315 Predicted translation 99.4 3.1E-10 6.6E-15 121.1 32.0 285 753-1081 75-393 (566)
235 PRK03629 tolB translocation pr 99.4 8.6E-11 1.9E-15 133.9 30.4 223 382-660 180-416 (429)
236 PF04762 IKI3: IKI3 family; I 99.4 2.2E-08 4.7E-13 122.5 51.2 538 357-1030 74-689 (928)
237 PRK04922 tolB translocation pr 99.4 3.5E-11 7.6E-16 137.9 25.7 222 353-628 198-432 (433)
238 KOG2315 Predicted translation 99.4 3.7E-10 8.1E-15 120.4 30.9 348 358-913 34-411 (566)
239 PRK02889 tolB translocation pr 99.4 3.8E-11 8.2E-16 137.1 25.5 222 353-628 190-424 (427)
240 PRK05137 tolB translocation pr 99.4 1.4E-10 3E-15 133.3 29.1 216 381-650 182-414 (435)
241 PRK05137 tolB translocation pr 99.4 7E-11 1.5E-15 135.7 26.4 221 353-628 196-432 (435)
242 COG4946 Uncharacterized protei 99.4 5.6E-09 1.2E-13 108.6 36.6 171 829-1014 331-507 (668)
243 PF08662 eIF2A: Eukaryotic tra 99.4 3.1E-11 6.8E-16 120.2 19.8 155 863-1034 9-187 (194)
244 KOG2111 Uncharacterized conser 99.4 1.5E-09 3.2E-14 107.7 30.7 237 361-650 8-258 (346)
245 KOG1409 Uncharacterized conser 99.4 3.6E-11 7.7E-16 119.9 19.6 326 584-1026 34-395 (404)
246 KOG1354 Serine/threonine prote 99.4 9.5E-11 2.1E-15 116.7 22.2 183 465-650 25-246 (433)
247 PRK04922 tolB translocation pr 99.4 1.4E-10 3E-15 133.0 26.8 215 381-649 184-412 (433)
248 PRK02889 tolB translocation pr 99.4 1.7E-10 3.7E-15 131.7 27.3 192 416-640 191-392 (427)
249 TIGR02658 TTQ_MADH_Hv methylam 99.4 1.8E-09 4E-14 115.3 33.0 204 823-1034 109-339 (352)
250 COG5354 Uncharacterized protei 99.4 6.5E-10 1.4E-14 117.0 28.7 362 416-924 28-421 (561)
251 KOG2041 WD40 repeat protein [G 99.4 1.2E-09 2.5E-14 118.9 31.3 476 465-1034 14-541 (1189)
252 COG2706 3-carboxymuconate cycl 99.4 3.4E-09 7.3E-14 108.0 32.8 282 723-1030 15-328 (346)
253 KOG3881 Uncharacterized conser 99.4 7.8E-11 1.7E-15 119.8 21.0 256 355-650 52-322 (412)
254 PF04762 IKI3: IKI3 family; I 99.4 6.6E-07 1.4E-11 109.8 58.6 471 418-1025 73-639 (928)
255 PF10282 Lactonase: Lactonase, 99.3 8.7E-10 1.9E-14 122.1 30.6 252 818-1085 36-329 (345)
256 KOG3881 Uncharacterized conser 99.3 1.7E-10 3.8E-15 117.3 21.1 181 757-963 154-342 (412)
257 PRK01029 tolB translocation pr 99.3 3.1E-10 6.7E-15 128.6 25.8 223 357-629 183-425 (428)
258 COG5354 Uncharacterized protei 99.3 6.1E-09 1.3E-13 109.8 31.6 294 752-1081 72-398 (561)
259 COG2706 3-carboxymuconate cycl 99.3 1.1E-08 2.3E-13 104.4 31.9 255 817-1087 38-330 (346)
260 PF08662 eIF2A: Eukaryotic tra 99.3 1.6E-10 3.6E-15 115.0 18.4 150 906-1079 9-180 (194)
261 KOG1354 Serine/threonine prote 99.3 4.8E-10 1E-14 111.8 20.8 282 355-653 22-364 (433)
262 PRK04792 tolB translocation pr 99.3 9.6E-10 2.1E-14 125.8 26.1 222 353-628 212-446 (448)
263 KOG2314 Translation initiation 99.3 2.7E-09 5.9E-14 113.2 26.7 295 752-1081 250-576 (698)
264 TIGR02800 propeller_TolB tol-p 99.3 1.6E-09 3.6E-14 124.9 27.9 205 839-1071 170-387 (417)
265 TIGR02658 TTQ_MADH_Hv methylam 99.3 1E-08 2.2E-13 109.8 30.9 238 826-1081 53-333 (352)
266 PRK00178 tolB translocation pr 99.2 2.1E-09 4.5E-14 124.0 27.0 222 353-628 193-427 (430)
267 TIGR02800 propeller_TolB tol-p 99.2 4.1E-09 8.8E-14 121.7 28.3 191 416-640 185-386 (417)
268 KOG1409 Uncharacterized conser 99.2 2E-09 4.4E-14 107.6 21.1 215 415-661 19-240 (404)
269 KOG2314 Translation initiation 99.2 1.1E-08 2.3E-13 108.8 25.8 320 578-1025 214-573 (698)
270 KOG4547 WD40 repeat-containing 99.1 5E-09 1.1E-13 113.1 22.1 188 828-1026 3-221 (541)
271 PRK04792 tolB translocation pr 99.1 2.4E-08 5.3E-13 114.3 29.0 198 416-647 213-424 (448)
272 PRK00178 tolB translocation pr 99.1 1.9E-08 4.1E-13 116.1 27.9 199 416-648 194-406 (430)
273 KOG0280 Uncharacterized conser 99.1 9.2E-09 2E-13 100.9 20.6 273 724-1027 46-335 (339)
274 PRK01029 tolB translocation pr 99.1 2.4E-08 5.2E-13 113.3 27.6 219 381-650 165-405 (428)
275 TIGR03300 assembly_YfgL outer 99.1 2.5E-08 5.4E-13 113.0 27.8 304 481-929 67-376 (377)
276 KOG4547 WD40 repeat-containing 99.1 4.9E-09 1.1E-13 113.1 20.0 146 762-933 69-221 (541)
277 TIGR03300 assembly_YfgL outer 99.0 1.6E-07 3.5E-12 106.4 30.6 234 370-650 65-299 (377)
278 PLN02919 haloacid dehalogenase 99.0 8.9E-08 1.9E-12 119.8 29.9 261 755-1029 571-892 (1057)
279 PLN02919 haloacid dehalogenase 99.0 1.1E-07 2.4E-12 119.0 30.7 257 821-1081 570-891 (1057)
280 KOG0280 Uncharacterized conser 99.0 4.7E-08 1E-12 96.1 19.5 193 357-565 68-265 (339)
281 PRK04043 tolB translocation pr 99.0 1.6E-07 3.4E-12 105.8 26.2 156 359-544 188-360 (419)
282 KOG3617 WD40 and TPR repeat-co 99.0 1.8E-07 3.9E-12 104.2 24.8 113 358-497 15-131 (1416)
283 KOG1064 RAVE (regulator of V-A 98.9 6.1E-09 1.3E-13 124.9 13.4 198 357-614 2207-2408(2439)
284 KOG4190 Uncharacterized conser 98.9 4.3E-09 9.3E-14 111.1 9.4 210 816-1034 733-957 (1034)
285 PF15492 Nbas_N: Neuroblastoma 98.9 5.6E-07 1.2E-11 89.3 22.9 207 824-1034 3-268 (282)
286 KOG3914 WD repeat protein WDR4 98.9 2.3E-08 4.9E-13 103.0 13.3 171 359-552 63-234 (390)
287 KOG0309 Conserved WD40 repeat- 98.8 2.7E-08 5.9E-13 109.1 12.7 303 355-733 21-340 (1081)
288 KOG3914 WD repeat protein WDR4 98.8 3.8E-08 8.2E-13 101.4 12.8 158 905-1081 65-226 (390)
289 KOG1064 RAVE (regulator of V-A 98.8 2.4E-08 5.3E-13 119.9 12.2 200 416-657 2204-2406(2439)
290 PF13360 PQQ_2: PQQ-like domai 98.8 1.1E-06 2.3E-11 92.7 22.8 225 838-1085 2-237 (238)
291 PRK11138 outer membrane biogen 98.8 6E-06 1.3E-10 93.9 30.1 310 481-931 71-393 (394)
292 KOG4532 WD40-like repeat conta 98.8 1.7E-06 3.8E-11 84.0 21.0 234 629-933 83-332 (344)
293 PF15492 Nbas_N: Neuroblastoma 98.7 5.6E-06 1.2E-10 82.4 24.6 216 865-1087 3-270 (282)
294 PRK11138 outer membrane biogen 98.7 1.4E-05 3.1E-10 90.8 31.9 211 838-1077 169-393 (394)
295 PF07433 DUF1513: Protein of u 98.7 7E-06 1.5E-10 84.7 26.0 239 362-643 8-280 (305)
296 KOG4190 Uncharacterized conser 98.7 6.5E-08 1.4E-12 102.4 11.2 274 711-1021 744-1032(1034)
297 PRK04043 tolB translocation pr 98.7 4.5E-06 9.8E-11 94.1 26.6 209 840-1079 170-401 (419)
298 PF08450 SGL: SMP-30/Gluconola 98.7 1.2E-05 2.5E-10 84.9 27.3 220 822-1067 3-244 (246)
299 KOG4532 WD40-like repeat conta 98.7 3.1E-06 6.7E-11 82.3 20.1 242 831-1081 85-334 (344)
300 PF07433 DUF1513: Protein of u 98.6 9.3E-06 2E-10 83.7 23.8 186 823-1019 55-279 (305)
301 KOG4649 PQQ (pyrrolo-quinoline 98.6 9.1E-05 2E-09 72.2 28.5 146 471-645 16-162 (354)
302 KOG0309 Conserved WD40 repeat- 98.6 1.6E-07 3.5E-12 103.2 10.8 257 360-650 69-341 (1081)
303 KOG3617 WD40 and TPR repeat-co 98.6 8.4E-06 1.8E-10 91.4 23.2 113 425-546 20-136 (1416)
304 COG5170 CDC55 Serine/threonine 98.6 9.5E-07 2.1E-11 87.3 14.2 226 419-661 25-322 (460)
305 KOG0882 Cyclophilin-related pe 98.6 2.8E-06 6.2E-11 88.6 18.1 213 418-658 7-240 (558)
306 PF08450 SGL: SMP-30/Gluconola 98.6 0.00019 4.1E-09 75.7 31.8 228 362-637 3-244 (246)
307 KOG1897 Damage-specific DNA bi 98.5 0.0049 1.1E-07 72.0 50.1 314 714-1079 595-943 (1096)
308 PF06433 Me-amine-dh_H: Methyl 98.5 8.4E-05 1.8E-09 77.7 26.1 205 823-1034 99-329 (342)
309 KOG2695 WD40 repeat protein [G 98.5 5.8E-07 1.3E-11 90.4 9.8 164 365-552 218-387 (425)
310 COG5170 CDC55 Serine/threonine 98.5 1.1E-06 2.4E-11 86.9 11.5 119 816-935 170-312 (460)
311 PF13360 PQQ_2: PQQ-like domai 98.5 2.9E-05 6.4E-10 81.7 23.5 229 380-653 2-235 (238)
312 KOG4714 Nucleoporin [Nuclear s 98.5 1.9E-06 4.1E-11 83.5 12.6 210 361-605 39-255 (319)
313 PF00400 WD40: WD domain, G-be 98.5 5E-07 1.1E-11 63.4 6.1 39 892-930 1-39 (39)
314 KOG0882 Cyclophilin-related pe 98.4 1.8E-06 4E-11 90.0 12.4 213 858-1081 8-234 (558)
315 KOG2066 Vacuolar assembly/sort 98.4 5E-06 1.1E-10 93.4 16.0 190 860-1079 40-234 (846)
316 KOG1832 HIV-1 Vpr-binding prot 98.4 3.4E-07 7.4E-12 102.6 6.7 198 850-1081 1092-1294(1516)
317 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.0011 2.3E-08 65.0 29.2 145 365-537 17-161 (354)
318 KOG2695 WD40 repeat protein [G 98.4 1.3E-06 2.8E-11 88.0 9.8 151 876-1034 228-385 (425)
319 KOG4714 Nucleoporin [Nuclear s 98.4 3.7E-06 8E-11 81.5 12.3 198 862-1079 39-255 (319)
320 PF10607 CLTH: CTLH/CRA C-term 98.4 1.2E-06 2.7E-11 83.2 9.2 132 38-182 5-141 (145)
321 KOG0396 Uncharacterized conser 98.4 2.6E-06 5.7E-11 87.1 11.8 121 5-127 115-244 (389)
322 PRK02888 nitrous-oxide reducta 98.4 6.3E-05 1.4E-09 85.1 23.5 185 826-1026 200-405 (635)
323 KOG1920 IkappaB kinase complex 98.4 0.0028 6.1E-08 75.6 37.1 275 576-932 70-365 (1265)
324 KOG1920 IkappaB kinase complex 98.4 0.00012 2.7E-09 86.5 25.8 275 750-1077 67-364 (1265)
325 PRK02888 nitrous-oxide reducta 98.3 4.1E-05 8.9E-10 86.5 19.4 224 828-1079 139-405 (635)
326 KOG1275 PAB-dependent poly(A) 98.3 1.3E-05 2.9E-10 91.1 14.8 181 829-1023 146-340 (1118)
327 KOG2114 Vacuolar assembly/sort 98.3 7E-05 1.5E-09 85.2 20.0 208 866-1087 30-252 (933)
328 KOG1645 RING-finger-containing 98.2 6.1E-05 1.3E-09 78.0 17.4 230 841-1081 175-422 (463)
329 PF06433 Me-amine-dh_H: Methyl 98.2 0.0014 3.1E-08 68.7 27.6 248 381-659 17-330 (342)
330 KOG1645 RING-finger-containing 98.2 0.0002 4.2E-09 74.4 19.8 223 415-648 188-461 (463)
331 PF00400 WD40: WD domain, G-be 98.2 4.6E-06 1E-10 58.4 5.8 38 984-1023 2-39 (39)
332 PF08513 LisH: LisH; InterPro 98.2 3.1E-06 6.8E-11 52.3 3.9 27 6-32 1-27 (27)
333 cd00216 PQQ_DH Dehydrogenases 98.1 0.0018 3.9E-08 75.4 29.1 155 865-1034 222-433 (488)
334 PF08596 Lgl_C: Lethal giant l 98.1 0.0005 1.1E-08 76.2 22.9 283 753-1079 3-336 (395)
335 cd00216 PQQ_DH Dehydrogenases 98.1 0.0017 3.6E-08 75.8 27.6 245 831-1088 111-434 (488)
336 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0094 2E-07 66.5 32.5 105 367-495 1-129 (353)
337 KOG3621 WD40 repeat-containing 98.0 0.00044 9.6E-09 77.3 20.6 158 752-933 77-245 (726)
338 KOG2114 Vacuolar assembly/sort 98.0 0.00072 1.6E-08 77.3 22.3 202 824-1033 29-251 (933)
339 KOG3621 WD40 repeat-containing 98.0 0.00054 1.2E-08 76.7 20.3 139 357-516 32-177 (726)
340 KOG1275 PAB-dependent poly(A) 98.0 0.00014 3.1E-09 83.0 15.6 184 431-647 146-341 (1118)
341 KOG2066 Vacuolar assembly/sort 98.0 0.00056 1.2E-08 77.6 19.4 187 752-981 40-233 (846)
342 PF08596 Lgl_C: Lethal giant l 97.9 0.0027 5.8E-08 70.5 24.7 268 360-647 3-334 (395)
343 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.002 4.4E-08 71.8 24.1 97 823-920 239-345 (353)
344 PF04053 Coatomer_WDAD: Coatom 97.9 0.00084 1.8E-08 75.5 20.7 225 752-1028 33-265 (443)
345 smart00668 CTLH C-terminal to 97.9 1.4E-05 3.1E-10 61.8 4.4 52 38-90 5-56 (58)
346 smart00667 LisH Lissencephaly 97.9 1.8E-05 3.9E-10 53.3 4.3 32 4-35 2-33 (34)
347 KOG1897 Damage-specific DNA bi 97.9 0.11 2.3E-06 61.3 49.9 467 467-1022 489-1001(1096)
348 PF14583 Pectate_lyase22: Olig 97.9 0.0022 4.8E-08 68.7 21.9 175 839-1024 168-380 (386)
349 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.045 9.7E-07 64.1 34.2 115 481-614 71-199 (527)
350 PF06977 SdiA-regulated: SdiA- 97.8 0.002 4.2E-08 66.2 19.9 216 854-1075 16-247 (248)
351 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.028 6.2E-07 65.7 32.1 149 883-1034 272-499 (527)
352 PF11768 DUF3312: Protein of u 97.8 0.00023 5E-09 78.5 13.6 129 349-500 196-332 (545)
353 PF04841 Vps16_N: Vps16, N-ter 97.8 0.0082 1.8E-07 67.8 26.6 199 824-1034 34-255 (410)
354 COG3391 Uncharacterized conser 97.8 0.0073 1.6E-07 67.8 25.6 205 821-1034 76-292 (381)
355 PF06977 SdiA-regulated: SdiA- 97.8 0.018 3.8E-07 59.3 25.3 187 357-566 20-234 (248)
356 PF04053 Coatomer_WDAD: Coatom 97.8 0.0038 8.3E-08 70.3 22.4 221 818-1081 32-265 (443)
357 PF11768 DUF3312: Protein of u 97.7 0.013 2.8E-07 65.2 25.3 113 955-1081 208-332 (545)
358 COG0823 TolB Periplasmic compo 97.7 0.002 4.2E-08 72.4 18.8 164 353-544 186-361 (425)
359 PF14583 Pectate_lyase22: Olig 97.7 0.028 6.2E-07 60.5 26.2 287 758-1079 42-382 (386)
360 KOG1008 Uncharacterized conser 97.6 7.8E-05 1.7E-09 81.9 5.7 253 818-1081 56-338 (783)
361 PF04841 Vps16_N: Vps16, N-ter 97.6 0.14 3E-06 58.0 31.5 136 825-989 185-322 (410)
362 PF08553 VID27: VID27 cytoplas 97.5 0.0074 1.6E-07 71.7 21.1 150 477-647 492-646 (794)
363 KOG1008 Uncharacterized conser 97.5 3.8E-05 8.3E-10 84.2 2.2 204 357-604 55-275 (783)
364 COG3391 Uncharacterized conser 97.5 0.091 2E-06 59.1 28.9 241 820-1081 32-286 (381)
365 COG0823 TolB Periplasmic compo 97.5 0.013 2.8E-07 65.9 21.8 175 840-1031 174-364 (425)
366 PF00780 CNH: CNH domain; Int 97.5 0.039 8.5E-07 59.3 25.0 235 761-1034 5-264 (275)
367 PF02897 Peptidase_S9_N: Proly 97.4 0.12 2.7E-06 59.3 29.6 245 361-651 126-407 (414)
368 PRK13616 lipoprotein LpqB; Pro 97.4 0.023 5.1E-07 66.8 23.5 169 838-1024 328-524 (591)
369 KOG2817 Predicted E3 ubiquitin 97.4 0.0013 2.8E-08 69.0 11.1 108 6-115 117-237 (394)
370 PRK13616 lipoprotein LpqB; Pro 97.3 0.01 2.2E-07 69.7 19.0 187 819-1019 350-562 (591)
371 COG3386 Gluconolactonase [Carb 97.3 0.065 1.4E-06 57.3 22.9 221 825-1069 31-276 (307)
372 PF14727 PHTB1_N: PTHB1 N-term 97.3 0.5 1.1E-05 52.7 30.7 294 762-1089 36-371 (418)
373 PF02897 Peptidase_S9_N: Proly 97.2 0.076 1.6E-06 61.0 24.7 239 821-1081 126-407 (414)
374 COG3490 Uncharacterized protei 97.2 0.062 1.3E-06 54.0 19.8 254 357-646 66-346 (366)
375 COG3386 Gluconolactonase [Carb 97.2 0.12 2.5E-06 55.5 23.8 232 363-638 29-275 (307)
376 PF08553 VID27: VID27 cytoplas 97.1 0.032 6.9E-07 66.5 20.0 146 871-1024 492-646 (794)
377 KOG4640 Anaphase-promoting com 97.1 0.0026 5.6E-08 70.5 9.7 96 357-475 19-115 (665)
378 KOG2395 Protein involved in va 97.0 0.046 1E-06 59.7 18.4 150 478-647 345-499 (644)
379 COG3490 Uncharacterized protei 97.0 0.29 6.2E-06 49.5 22.4 234 822-1075 71-345 (366)
380 PF03178 CPSF_A: CPSF A subuni 97.0 0.079 1.7E-06 58.3 21.5 175 839-1025 2-202 (321)
381 KOG4640 Anaphase-promoting com 97.0 0.0034 7.3E-08 69.7 9.7 94 859-961 20-114 (665)
382 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.13 2.8E-06 57.0 22.0 94 425-519 6-118 (415)
383 TIGR03074 PQQ_membr_DH membran 96.9 1.7 3.7E-05 52.9 39.4 86 972-1066 640-743 (764)
384 smart00320 WD40 WD40 repeats. 96.9 0.0023 5E-08 44.0 5.3 39 892-930 2-40 (40)
385 PF03178 CPSF_A: CPSF A subuni 96.9 0.22 4.7E-06 54.9 23.2 222 381-646 2-263 (321)
386 PF00780 CNH: CNH domain; Int 96.9 0.27 5.8E-06 52.8 23.5 222 828-1081 5-258 (275)
387 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.43 9.3E-06 53.0 24.2 78 995-1084 307-404 (415)
388 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.074 1.6E-06 46.0 13.8 54 587-646 16-69 (111)
389 PF07995 GSDH: Glucose / Sorbo 96.7 0.99 2.2E-05 49.6 26.3 111 360-486 3-133 (331)
390 KOG2079 Vacuolar assembly/sort 96.6 0.064 1.4E-06 63.8 16.5 99 373-496 101-202 (1206)
391 KOG2395 Protein involved in va 96.6 0.037 8.1E-07 60.3 13.4 144 874-1024 348-499 (644)
392 KOG1898 Splicing factor 3b, su 96.5 2.9 6.2E-05 50.4 34.6 112 957-1081 938-1051(1205)
393 PRK10115 protease 2; Provision 96.4 2.3 4.9E-05 51.9 29.2 196 819-1025 127-344 (686)
394 PF10647 Gmad1: Lipoprotein Lp 96.3 0.5 1.1E-05 49.6 20.4 149 820-970 25-183 (253)
395 smart00320 WD40 WD40 repeats. 96.3 0.0099 2.1E-07 40.6 5.3 31 993-1023 10-40 (40)
396 COG3204 Uncharacterized protei 96.3 0.58 1.3E-05 47.9 18.9 170 898-1080 81-265 (316)
397 PF07995 GSDH: Glucose / Sorbo 96.3 0.87 1.9E-05 50.1 22.6 240 820-1073 3-330 (331)
398 KOG2079 Vacuolar assembly/sort 96.2 0.043 9.4E-07 65.1 12.5 101 829-932 98-203 (1206)
399 COG3204 Uncharacterized protei 96.2 0.83 1.8E-05 46.9 19.8 202 750-977 84-308 (316)
400 KOG4499 Ca2+-binding protein R 96.2 0.73 1.6E-05 45.2 18.4 140 465-629 108-264 (310)
401 PF15390 DUF4613: Domain of un 96.2 3.1 6.7E-05 47.1 26.4 156 466-647 20-185 (671)
402 PHA02713 hypothetical protein; 96.2 0.41 9E-06 56.7 20.7 228 840-1095 273-548 (557)
403 PF14870 PSII_BNR: Photosynthe 96.1 2.5 5.3E-05 45.1 28.4 158 857-1022 142-301 (302)
404 KOG2444 WD40 repeat protein [G 96.1 0.022 4.8E-07 55.5 7.9 104 830-933 70-178 (238)
405 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.26 5.6E-06 42.8 13.2 102 361-492 2-109 (111)
406 TIGR03074 PQQ_membr_DH membran 96.0 1.9 4E-05 52.6 25.5 210 873-1086 195-485 (764)
407 KOG4441 Proteins containing BT 96.0 0.9 1.9E-05 53.8 22.0 234 828-1089 283-555 (571)
408 PF05096 Glu_cyclase_2: Glutam 95.9 1.7 3.7E-05 44.7 20.8 185 821-1014 47-249 (264)
409 PF15390 DUF4613: Domain of un 95.8 0.4 8.7E-06 53.7 16.7 160 859-1027 19-188 (671)
410 PF05694 SBP56: 56kDa selenium 95.7 2.7 5.9E-05 46.2 22.1 221 369-606 86-344 (461)
411 PF10647 Gmad1: Lipoprotein Lp 95.6 0.68 1.5E-05 48.6 17.4 148 861-1018 25-188 (253)
412 PHA02713 hypothetical protein; 95.6 0.63 1.4E-05 55.2 18.9 188 828-1030 302-538 (557)
413 KOG2444 WD40 repeat protein [G 95.4 0.051 1.1E-06 53.1 7.4 103 374-498 73-178 (238)
414 PF12894 Apc4_WD40: Anaphase-p 95.3 0.061 1.3E-06 38.7 5.6 31 420-450 11-41 (47)
415 PF10168 Nup88: Nuclear pore c 95.1 7.1 0.00015 47.3 25.6 95 817-934 83-181 (717)
416 PF12894 Apc4_WD40: Anaphase-p 95.1 0.086 1.9E-06 37.9 5.9 33 995-1028 11-43 (47)
417 KOG1898 Splicing factor 3b, su 95.0 12 0.00026 45.5 31.8 105 824-933 939-1049(1205)
418 PRK10115 protease 2; Provision 94.7 14 0.00031 45.1 32.3 245 752-1028 127-397 (686)
419 KOG4441 Proteins containing BT 94.7 1.5 3.3E-05 51.9 18.5 192 823-1030 327-551 (571)
420 TIGR02604 Piru_Ver_Nterm putat 94.6 7.6 0.00016 43.5 23.2 138 819-969 14-200 (367)
421 PF05096 Glu_cyclase_2: Glutam 94.4 5.4 0.00012 41.1 18.9 191 750-970 43-248 (264)
422 COG4257 Vgb Streptogramin lyas 94.3 4.5 9.8E-05 41.1 17.5 198 862-1087 64-272 (353)
423 PRK13684 Ycf48-like protein; P 94.2 11 0.00024 41.5 28.0 155 859-1023 172-329 (334)
424 PF05694 SBP56: 56kDa selenium 93.9 4.1 8.8E-05 44.9 17.6 190 824-1014 135-392 (461)
425 PF12234 Rav1p_C: RAVE protein 93.8 0.9 1.9E-05 53.1 13.7 118 861-980 31-155 (631)
426 TIGR03118 PEPCTERM_chp_1 conse 93.8 9.8 0.00021 39.7 19.8 206 821-1034 25-288 (336)
427 PF10168 Nup88: Nuclear pore c 93.8 10 0.00022 46.0 23.0 69 379-449 40-112 (717)
428 PHA03098 kelch-like protein; P 93.7 2.9 6.4E-05 49.8 18.6 187 828-1029 293-515 (534)
429 PF14870 PSII_BNR: Photosynthe 93.6 12 0.00026 40.1 28.8 231 820-1075 63-301 (302)
430 KOG4499 Ca2+-binding protein R 93.4 8.9 0.00019 38.0 19.6 207 838-1066 36-272 (310)
431 KOG3630 Nuclear pore complex, 93.4 0.83 1.8E-05 55.1 12.5 146 818-969 100-260 (1405)
432 KOG1916 Nuclear protein, conta 93.1 0.097 2.1E-06 60.8 4.4 144 839-986 153-328 (1283)
433 PF12234 Rav1p_C: RAVE protein 92.9 2.8 6.1E-05 49.1 15.9 124 467-603 31-155 (631)
434 TIGR03118 PEPCTERM_chp_1 conse 92.9 13 0.00029 38.7 21.9 227 422-657 24-287 (336)
435 TIGR02604 Piru_Ver_Nterm putat 92.9 2.7 5.8E-05 47.1 15.7 151 860-1016 14-204 (367)
436 PHA02790 Kelch-like protein; P 92.8 6.5 0.00014 45.9 19.2 184 828-1028 270-473 (480)
437 PHA03098 kelch-like protein; P 92.7 5.9 0.00013 47.3 19.2 191 871-1086 294-517 (534)
438 KOG2247 WD40 repeat-containing 92.3 0.024 5.3E-07 61.2 -1.5 147 756-931 39-187 (615)
439 COG3823 Glutamine cyclotransfe 92.0 4.8 0.0001 39.1 13.2 178 829-1013 55-247 (262)
440 PF03022 MRJP: Major royal jel 92.0 15 0.00033 39.2 19.1 171 840-1014 35-254 (287)
441 KOG2280 Vacuolar assembly/sort 91.9 25 0.00054 41.4 21.0 181 839-1034 64-255 (829)
442 PF13449 Phytase-like: Esteras 91.9 23 0.00049 38.9 22.6 162 859-1024 19-248 (326)
443 COG5167 VID27 Protein involved 91.8 8.4 0.00018 42.6 16.4 155 471-648 472-632 (776)
444 KOG3630 Nuclear pore complex, 91.7 2.4 5.2E-05 51.5 13.4 98 820-920 157-261 (1405)
445 PRK13684 Ycf48-like protein; P 91.6 25 0.00053 38.8 29.6 156 902-1077 172-330 (334)
446 COG3823 Glutamine cyclotransfe 91.6 6.9 0.00015 38.1 13.8 183 871-1067 55-248 (262)
447 COG1520 FOG: WD40-like repeat 91.5 9.8 0.00021 42.8 18.2 203 874-1089 70-279 (370)
448 KOG3616 Selective LIM binding 91.4 2.7 5.9E-05 48.2 12.8 77 420-505 14-90 (1636)
449 KOG1916 Nuclear protein, conta 91.4 0.44 9.6E-06 55.7 6.9 163 357-546 131-328 (1283)
450 PF07676 PD40: WD40-like Beta 91.3 0.72 1.6E-05 31.7 5.5 33 354-386 4-38 (39)
451 KOG2280 Vacuolar assembly/sort 91.3 8.3 0.00018 45.1 16.5 186 418-629 82-270 (829)
452 PF10214 Rrn6: RNA polymerase 91.2 48 0.0011 41.3 26.7 174 817-1027 78-278 (765)
453 PF11725 AvrE: Pathogenicity f 91.0 31 0.00068 44.7 22.2 149 357-542 361-517 (1774)
454 PF10313 DUF2415: Uncharacteri 90.8 0.7 1.5E-05 32.2 4.8 32 860-891 1-34 (43)
455 PF10313 DUF2415: Uncharacteri 90.6 1 2.3E-05 31.4 5.5 32 421-452 1-35 (43)
456 PF14761 HPS3_N: Hermansky-Pud 90.5 13 0.00028 36.9 15.0 156 820-980 19-213 (215)
457 COG5276 Uncharacterized conser 90.5 24 0.00051 36.6 20.2 150 821-984 89-244 (370)
458 PLN00033 photosystem II stabil 90.1 37 0.0008 38.2 26.7 151 905-1075 241-396 (398)
459 PHA02790 Kelch-like protein; P 90.1 16 0.00034 42.7 18.5 185 871-1081 271-473 (480)
460 PF13449 Phytase-like: Esteras 90.0 14 0.0003 40.6 17.1 113 902-1015 19-166 (326)
461 PLN00033 photosystem II stabil 90.0 38 0.00082 38.1 27.5 152 863-1022 242-396 (398)
462 PF14761 HPS3_N: Hermansky-Pud 89.5 8.3 0.00018 38.2 12.8 157 906-1078 21-214 (215)
463 TIGR03606 non_repeat_PQQ dehyd 89.0 23 0.00049 40.3 17.7 111 860-973 30-166 (454)
464 PF05935 Arylsulfotrans: Aryls 88.6 20 0.00044 41.6 17.8 148 880-1037 126-313 (477)
465 COG4590 ABC-type uncharacteriz 88.3 2.6 5.6E-05 45.6 9.1 159 817-985 219-390 (733)
466 PF08728 CRT10: CRT10; InterP 88.3 12 0.00027 44.5 15.5 173 830-1024 49-245 (717)
467 KOG1983 Tomosyn and related SN 87.6 8.6 0.00019 48.7 14.7 67 956-1029 202-268 (993)
468 KOG2377 Uncharacterized conser 87.2 3.5 7.5E-05 44.8 9.3 123 357-499 65-187 (657)
469 COG1520 FOG: WD40-like repeat 87.1 57 0.0012 36.6 22.5 205 366-615 65-279 (370)
470 PF14727 PHTB1_N: PTHB1 N-term 87.1 58 0.0013 36.7 32.6 158 475-647 34-203 (418)
471 KOG1900 Nuclear pore complex, 86.8 5.8 0.00013 49.4 12.0 146 879-1026 96-273 (1311)
472 KOG2377 Uncharacterized conser 86.7 12 0.00026 40.9 12.9 104 901-1011 65-169 (657)
473 KOG2247 WD40 repeat-containing 86.5 0.34 7.3E-06 52.8 1.5 118 353-495 69-186 (615)
474 PF02333 Phytase: Phytase; In 85.8 62 0.0013 35.8 19.6 198 871-1081 67-293 (381)
475 PF12657 TFIIIC_delta: Transcr 85.7 4.1 8.8E-05 39.8 8.6 31 421-451 86-122 (173)
476 TIGR03606 non_repeat_PQQ dehyd 85.6 22 0.00049 40.4 15.2 64 356-432 27-90 (454)
477 PF03022 MRJP: Major royal jel 85.4 56 0.0012 35.0 20.2 147 490-636 35-253 (287)
478 PF08728 CRT10: CRT10; InterP 85.3 3.1 6.8E-05 49.2 8.6 123 372-496 115-245 (717)
479 KOG1983 Tomosyn and related SN 85.3 62 0.0013 41.3 20.4 55 589-650 212-266 (993)
480 COG3292 Predicted periplasmic 85.3 76 0.0016 36.4 24.0 71 420-498 164-234 (671)
481 COG4590 ABC-type uncharacteriz 85.2 7.9 0.00017 42.1 10.7 171 850-1029 211-390 (733)
482 KOG1896 mRNA cleavage and poly 85.2 1.2E+02 0.0025 38.4 42.6 189 880-1081 1002-1216(1366)
483 PF14781 BBS2_N: Ciliary BBSom 85.1 22 0.00048 32.3 11.7 113 960-1085 6-132 (136)
484 PF07569 Hira: TUP1-like enhan 84.2 4.2 9.1E-05 41.4 8.1 76 910-985 18-99 (219)
485 PF07569 Hira: TUP1-like enhan 84.0 5.5 0.00012 40.5 8.9 74 365-452 17-97 (219)
486 KOG2063 Vacuolar assembly/sort 84.0 85 0.0018 38.8 19.7 249 757-1033 20-276 (877)
487 TIGR03548 mutarot_permut cycli 83.9 72 0.0016 35.0 19.4 66 963-1029 123-198 (323)
488 COG4257 Vgb Streptogramin lyas 83.5 58 0.0013 33.6 22.3 240 356-650 59-307 (353)
489 KOG4659 Uncharacterized conser 83.5 1.4E+02 0.003 37.9 33.3 24 750-773 660-683 (1899)
490 KOG1900 Nuclear pore complex, 82.5 14 0.0003 46.3 12.5 171 344-542 64-273 (1311)
491 KOG4460 Nuclear pore complex, 82.3 24 0.00052 39.5 12.9 92 995-1090 103-210 (741)
492 PF02333 Phytase: Phytase; In 81.5 92 0.002 34.5 20.8 198 430-650 66-292 (381)
493 PF11635 Med16: Mediator compl 81.5 87 0.0019 38.9 19.4 78 995-1073 259-345 (753)
494 KOG4460 Nuclear pore complex, 81.3 1E+02 0.0022 34.9 20.1 73 861-934 105-200 (741)
495 PF12768 Rax2: Cortical protei 81.1 43 0.00093 35.5 14.2 92 381-495 16-121 (281)
496 COG5276 Uncharacterized conser 81.0 75 0.0016 33.1 28.5 200 417-650 38-243 (370)
497 PF09862 DUF2089: Protein of u 80.9 6.7 0.00015 34.4 6.8 77 3-98 33-113 (113)
498 COG5290 IkappaB kinase complex 80.5 92 0.002 37.1 17.1 128 955-1095 249-383 (1243)
499 PF12657 TFIIIC_delta: Transcr 79.8 11 0.00023 36.9 8.9 31 903-933 86-122 (173)
500 PF10395 Utp8: Utp8 family; I 79.5 1.4E+02 0.0031 35.5 23.9 238 825-1079 34-306 (670)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.1e-64 Score=499.82 Aligned_cols=457 Identities=22% Similarity=0.310 Sum_probs=375.6
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc---HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHH
Q 001248 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1114)
Q Consensus 5 ~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~---~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (1114)
+-|++|+++|+|+.+||.+|+..||.|+|+.++ ...|.+.++.|+|++++..+..+...+ +.....+.|++.+|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 899999999999999999998885444 3334569999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccc-ccchhhhccCCCChHHHHHHHHHHHhhcccCCCcccc
Q 001248 82 LEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLEN-FRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDK 160 (1114)
Q Consensus 82 lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~ 160 (1114)
||++..+.+..|+.+||+.+.++. .+.+++++|..-+..++ +..++... .......|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999998885 58899999887665543 33333322 223567899999999999999999
Q ss_pred cCCCCCchhHHHHHHHHhHHHHHhhccCCCCCCCCcCcccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 001248 161 LQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240 (1114)
Q Consensus 161 ~~~~~~p~~rL~~ll~qa~~~Q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1114)
+|++||+.||+||+++|+++|.||+ ..+..|||.||+|++ ..+|
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~---------------~qip--------------- 213 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR---------------LQIP--------------- 213 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc---------------ccCC---------------
Confidence 9999999999999999999999999 566689999999999 2222
Q ss_pred CCCCCCCCcccccccCCCCCcCCCcccCccCCCCCCCccccccCCCCCCCCCcccCCCCChhhhhcccCCCCCccccccC
Q 001248 241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLP 320 (1114)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 320 (1114)
T Consensus 214 -------------------------------------------------------------------------------- 213 (519)
T KOG0293|consen 214 -------------------------------------------------------------------------------- 213 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCCcCCCCcCCCCCCCCCcceeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeee
Q 001248 321 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF 399 (1114)
Q Consensus 321 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~ 399 (1114)
.+..+++. |.++||.+.||++|+| ||+++.|.+..||++.....+.-
T Consensus 214 ----------------------------~qt~qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl--- 261 (519)
T KOG0293|consen 214 ----------------------------SQTWQILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKL--- 261 (519)
T ss_pred ----------------------------chhhhhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceee---
Confidence 11113444 9999999999999997 99999999999999876544221
Q ss_pred eeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCe
Q 001248 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479 (1114)
Q Consensus 400 ~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~ 479 (1114)
..++.+|..+|..+.||||.+||++++.|..+.+||+.+|....... .+|...+.+++|.|||.
T Consensus 262 -------------~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~- 325 (519)
T KOG0293|consen 262 -------------KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF- 325 (519)
T ss_pred -------------eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc-
Confidence 11588999999999999999999999999999999999998765321 24668999999999999
Q ss_pred eEEEEecCCCCEEEEeCCCCcceeEeeccc-cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEE
Q 001248 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 558 (1114)
Q Consensus 480 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 558 (1114)
.+++|+.|+++..||+. |..+..+++-. ..|.++++ +.||+++++.+.|..|++++.++...+. +.....++++
T Consensus 326 -~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its 400 (519)
T KOG0293|consen 326 -RFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITS 400 (519)
T ss_pred -eeEecCCCCcEEEecCC-cchhhcccccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhc-cccccCceeE
Confidence 69999999999999965 56666666543 55888886 4577899999999999999988754443 2234456777
Q ss_pred EEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEe
Q 001248 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVST 637 (1114)
Q Consensus 559 ~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~ 637 (1114)
+++|.+++ ++++.-.+..+++||++..+.+..+.+|.....+..-+|.. +..++++|+
T Consensus 401 ~~iS~d~k---------------------~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS 459 (519)
T KOG0293|consen 401 FSISKDGK---------------------LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS 459 (519)
T ss_pred EEEcCCCc---------------------EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC
Confidence 77777666 67777789999999999999999998887666666777776 568999999
Q ss_pred CCCcEEEEEccCCccceeeccc
Q 001248 638 NDNGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 638 ~dg~i~iwd~~~~~~~~~~~~~ 659 (1114)
+|+.|+||+..++ ..+..+.|
T Consensus 460 ED~kvyIWhr~sg-kll~~LsG 480 (519)
T KOG0293|consen 460 EDSKVYIWHRISG-KLLAVLSG 480 (519)
T ss_pred CCceEEEEEccCC-ceeEeecC
Confidence 9999999999888 56655544
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.9e-64 Score=484.50 Aligned_cols=459 Identities=20% Similarity=0.332 Sum_probs=388.7
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHH
Q 001248 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1114)
Q Consensus 5 ~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (1114)
..||+|||.|||+|+.+++|+++||+|+++++| ++.|.+.|.+|+||.++..+.+|++.+ +-+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~------kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPD------KKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCch------hHHHHHHHHH
Confidence 468999999999999999999999999999998 899999999999999999999995543 6889999999
Q ss_pred HHHHHhcCCHHHHHHHHHhh--cccccccCHHHHHHHHHHhccccccchhhhccCCCChHHHHHHHHHHHhhcccCCCcc
Q 001248 81 YLEALDKHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFR 158 (1114)
Q Consensus 81 ~lell~~~~~~~A~~~l~~~--l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~ 158 (1114)
.|||+|.++...|..+||+. +.-|+..+|++|-.|+.|+..+.+++++.|.+ .+.+.+|..+++.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999975 55567789999999999999999999999875 23445566777777666654
Q ss_pred cccCCCCCchhHHHHHHHHhHHHHHhhccCCCCCCCCcCcccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 001248 159 DKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGP 238 (1114)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~qa~~~Q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1114)
+||+||+.||+||++||+. +|.+|||+..++
T Consensus 155 -------VppSRLlaLlGQaLKWQqH------------------------------------------QGLLPPGt~iDL 185 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQH------------------------------------------QGLLPPGTTIDL 185 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhh------------------------------------------cCCCCCCceeee
Confidence 9999999999999999987 789999999999
Q ss_pred CCCCCCCCCCcccccccCCCCCcCCCcccCccCCCCCCCccccccCCCCCCCCCcccCCCCChhhhhcccCCCCCccccc
Q 001248 239 FQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEIN 318 (1114)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 318 (1114)
|+|..+ |...+++..|+...+.|++++.++
T Consensus 186 FRGkAA---------~K~~~Ee~~Pt~l~r~IKFg~KSh----------------------------------------- 215 (508)
T KOG0275|consen 186 FRGKAA---------MKDQEEERYPTQLARSIKFGQKSH----------------------------------------- 215 (508)
T ss_pred ccchhh---------hhhhHhhhchHHhhhheecccccc-----------------------------------------
Confidence 998872 345567777777777777666665
Q ss_pred cCcccccccccCCCCcCCCCcCCCCCCCCCcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEee
Q 001248 319 LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRN 398 (1114)
Q Consensus 319 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~ 398 (1114)
+.|..|||||+| |++|+.||.|.|||+-+|+......
T Consensus 216 ------------------------------------------~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLk 252 (508)
T KOG0275|consen 216 ------------------------------------------VECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLK 252 (508)
T ss_pred ------------------------------------------hhheeeCCCCce-Eeeccccceeeeehhccchhhhhhh
Confidence 378899999997 9999999999999999998875322
Q ss_pred eeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeec-cccCCeeEEEecCCC
Q 001248 399 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPN 477 (1114)
Q Consensus 399 ~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~ 477 (1114)
++. ...+.-|.++|.|+.||.|...||+|+.||.|+||.+.+|.+++ .+. .|...|+|+.||.|+
T Consensus 253 YQA-----------qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~ 318 (508)
T KOG0275|consen 253 YQA-----------QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDN 318 (508)
T ss_pred hhh-----------hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCc
Confidence 221 12466788999999999999999999999999999999999988 454 899999999999999
Q ss_pred CeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCC--e
Q 001248 478 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR--W 555 (1114)
Q Consensus 478 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~ 555 (1114)
. .+++++.|.++++.-+.+|++++.+.||.+.|+...| .++|..+++++.||+|++|+..+.++..++...+. .
T Consensus 319 S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~ 394 (508)
T KOG0275|consen 319 S--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYP 394 (508)
T ss_pred c--hhhcccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCccc
Confidence 9 5899999999999999999999999999999999986 56778999999999999999999988887765432 4
Q ss_pred eEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccC-CCCCCcCeEEEcCCCCEEE
Q 001248 556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFNKDGCLLA 634 (1114)
Q Consensus 556 v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~ 634 (1114)
|.++..-|... ..++++...++|+|.++ .|+.++.+... ...+...+.+.||.|.+++
T Consensus 395 vnsv~~~PKnp--------------------eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiY 453 (508)
T KOG0275|consen 395 VNSVILLPKNP--------------------EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIY 453 (508)
T ss_pred ceeEEEcCCCC--------------------ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEE
Confidence 44444444332 46888889999999998 57778777532 2234567889999999999
Q ss_pred EEeCCCcEEEEEccCCccceeec
Q 001248 635 VSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 635 ~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
+.+.|+.++.+...+| ..-+.+
T Consensus 454 cigED~vlYCF~~~sG-~LE~tl 475 (508)
T KOG0275|consen 454 CIGEDGVLYCFSVLSG-KLERTL 475 (508)
T ss_pred EEccCcEEEEEEeecC-ceeeee
Confidence 9999999999998888 444444
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-56 Score=475.89 Aligned_cols=574 Identities=15% Similarity=0.229 Sum_probs=473.0
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEcCCccee-EEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCC
Q 001248 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 442 (1114)
Q Consensus 364 v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 442 (1114)
++|+++|+. |++.. ...|.+-|+.++... .. .-......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~~-L~t~~-~d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQH-LYTAC-GDRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCCE-EEEec-CceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 899999995 88765 346888999998763 21 1234556899999999999999999999
Q ss_pred eEEEEEccCCceeeeeEeecc-ccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCC
Q 001248 443 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 521 (1114)
Q Consensus 443 ~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 521 (1114)
.+++|++.+++.++ .+.. |.++|.-++|.|.+. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998776 5666 999999999999997 89999999999999999999999999999999999999998
Q ss_pred CceEEEEEecCCeEEEEEcCCCCC-eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEE
Q 001248 522 NIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600 (1114)
Q Consensus 522 ~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 600 (1114)
+...|++|+.|+++++||+.+... ...+..|...|+++.+++|+. .+++++.|..+.+
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---------------------~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---------------------ELLSVGRDKVIIV 218 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---------------------eEEEeccCcEEEE
Confidence 888899999999999999996554 667788888899998888865 6999999999999
Q ss_pred EECCCcceEEEeccCCCCCCcCeEEEcCC-----CCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCc
Q 001248 601 WDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1114)
Q Consensus 601 wd~~~~~~~~~~~~~~~~~~v~~~~~s~d-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1114)
||+.+-+...+++.... +-++.+-++ |.++++++.+|.+++||.+++ ...........+ .+
T Consensus 219 wd~~~~~~l~~lp~ye~---~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~-~~~~~~~~~~~~----------e~ 284 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPLYES---LESVVRLREELGGKGEYIITAGGSGVVQYWDSESG-KCVYKQRQSDSE----------EI 284 (775)
T ss_pred eehhhhhhhheechhhh---eeeEEEechhcCCcceEEEEecCCceEEEEecccc-hhhhhhccCCch----------hh
Confidence 99988777777765543 566777776 679999999999999999988 333322211100 00
Q ss_pred cchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceE
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1114)
...........++....+..+.++|.++......+. +..+.|.
T Consensus 285 ------------------------------~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv-------G~ndEI~ 327 (775)
T KOG0319|consen 285 ------------------------------DHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV-------GYNDEIL 327 (775)
T ss_pred ------------------------------hcceeccccCceEEEEccceEEEEEccccEEehhhc-------CCchhhe
Confidence 011112234556677778899999887755444433 4678899
Q ss_pred EEEE-ccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEE
Q 001248 756 RLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 834 (1114)
Q Consensus 756 ~l~~-s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 834 (1114)
++.| .|+.+.+++++..+.+|+|++..... . .+. +|...|.++....+|-+|+
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------------------~--ii~--GH~e~vlSL~~~~~g~lla 381 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSYC----------------------Q--IIP--GHTEAVLSLDVWSSGDLLA 381 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCce----------------------E--EEe--CchhheeeeeecccCcEEE
Confidence 9887 56778899999999999997653211 1 133 3999999999888889999
Q ss_pred EEe-CCeEEEEEcCCC----ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE-----E----Eeecc
Q 001248 835 SAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-----K----SKLKG 900 (1114)
Q Consensus 835 ~~~-dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~-----~----~~l~~ 900 (1114)
+++ |.++++|.++.+ .++....+|.+.|.+++++.....+|++++.|+++++|++...+. . .....
T Consensus 382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a 461 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA 461 (775)
T ss_pred EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence 999 999999987432 345567899999999999986678999999999999999976221 1 13357
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEE
Q 001248 901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 979 (1114)
Q Consensus 901 h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd 979 (1114)
|...|++|+.+|+.+++|+||.|++.+||+++. ......+.||.. .+.++.|+|..+.+++ ++|++|+||.
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-----~~l~~vLsGH~R---Gvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-----LRLLGVLSGHTR---GVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccC-----ceEEEEeeCCcc---ceEEEEeccccceeEeccCCceEEEEE
Confidence 999999999999999999999999999999995 345777888885 8999999999999999 6999999999
Q ss_pred cCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
+.+..|++++. ||...|..+.|-.+|+.|++++.||.|++|++.++++++.+. +|.+. |+ +++-++ +
T Consensus 534 is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~H~Dr-vW--aL~~~~-~ 600 (775)
T KOG0319|consen 534 ISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------AHNDR-VW--ALSVSP-L 600 (775)
T ss_pred eccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------hccce-eE--EEeecC-c
Confidence 99999999997 999999999999999999999999999999999999999887 55444 78 666667 4
Q ss_pred CCeEEEEeCCCcEEEEeccCCC
Q 001248 1060 PNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1060 ~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
...++||+.||.|.+|.=.+.+
T Consensus 601 ~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred cceeEecCCCeEEEEeecCcHH
Confidence 6799999999999999866654
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-55 Score=469.41 Aligned_cols=546 Identities=14% Similarity=0.194 Sum_probs=453.6
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccC-CCCCeeEEEEcCCCCeE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l 435 (1114)
..+.+++++.+||+++ |++++..+.+++|++.+|+.+. .++. |+++|.-++|+|.|.+|
T Consensus 61 d~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~ir-------------------swKa~He~Pvi~ma~~~~g~Ll 120 (775)
T KOG0319|consen 61 DEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIR-------------------SWKAIHEAPVITMAFDPTGTLL 120 (775)
T ss_pred chhhhheeeecCCccE-EEEeeccceEEEEEcccchHhH-------------------hHhhccCCCeEEEEEcCCCceE
Confidence 5678999999999995 8899999999999999997765 2444 99999999999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc-ceeEeeccccCEEE
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYS 514 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~ 514 (1114)
|+|+.|+.|+|||+..+.+.. .|.||.+.|.++.|.|+-...+|++|+.|+++++||+.+.. ++.++..|.+.|++
T Consensus 121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts 197 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS 197 (775)
T ss_pred EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence 999999999999999998777 79999999999999999886679999999999999999554 58889999999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
++|.++ +..++++|.|..+.+||+...+....++.. ..+.++.+-+++. ...+.+++++++
T Consensus 198 L~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~----------------~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 198 LAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREEL----------------GGKGEYIITAGG 258 (775)
T ss_pred eeeccC--CceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhc----------------CCcceEEEEecC
Confidence 997654 578999999999999999665554444322 2344555544411 111458999999
Q ss_pred CCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCC
Q 001248 595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1114)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1114)
+|.+++||..+++++........ ..+..+...+....++..+.|..+.++|..+. +..+.+-|....+. .
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~~-~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~--------D 328 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSDS-EEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEIL--------D 328 (775)
T ss_pred CceEEEEecccchhhhhhccCCc-hhhhcceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhhe--------e
Confidence 99999999999988776654432 23666666666667777788899999999888 77777777776655 2
Q ss_pred ccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccce
Q 001248 675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1114)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1114)
+...+ ++...++.++....+++|+..+.... .+ .+|...|
T Consensus 329 m~~lG--------------------------------~e~~~laVATNs~~lr~y~~~~~~c~----ii----~GH~e~v 368 (775)
T KOG0319|consen 329 MKFLG--------------------------------PEESHLAVATNSPELRLYTLPTSYCQ----II----PGHTEAV 368 (775)
T ss_pred eeecC--------------------------------CccceEEEEeCCCceEEEecCCCceE----EE----eCchhhe
Confidence 33333 56788999999999999987764433 22 4699999
Q ss_pred EEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC-CEE
Q 001248 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYV 833 (1114)
Q Consensus 755 ~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~-~~l 833 (1114)
.++....+|..|++++.|.++++|.++.+..... ++ -...+|.+.|.+++++..+ .++
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~~------------------~~---a~~~gH~~svgava~~~~~asff 427 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL------------------CV---AQANGHTNSVGAVAGSKLGASFF 427 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcchhh------------------hh---hhhcccccccceeeecccCccEE
Confidence 9999888889999999999999998843211100 01 1223599999999998765 478
Q ss_pred EEEe-CCeEEEEEcCCCc---------cccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccccc
Q 001248 834 MSAS-GGKISLFNMMTFK---------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1114)
Q Consensus 834 ~~~~-dg~i~iwd~~~~~---------~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1114)
++++ |.++++|++...+ +..+...|...|++++++| +..++|+|+.|.+.+||+++.+++..++.||..
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 8888 9999999997521 1123457999999999999 889999999999999999999999999999999
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001248 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 982 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~ 982 (1114)
.|++|.|+|..+.|||+|.|+||+||.+++ ..|++.+.||.. .|..+.|-.+|+.|++ +.||-+++|++++
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 999999999999999999999999999998 567899999985 8999999999999999 6999999999999
Q ss_pred CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 983 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
++|..++. .|...|++++.++++.++++|+.||.|.+|.=.|
T Consensus 579 ~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 579 NECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999876 8999999999999999999999999999996443
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-50 Score=414.70 Aligned_cols=579 Identities=14% Similarity=0.149 Sum_probs=437.1
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
+.-.-+.-.|.|..+|.+. ...|.+-++++..... ++.+|...++-..|||.|-|+|+|
T Consensus 19 g~~~~ig~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASG 77 (603)
T KOG0318|consen 19 GVPIIIGGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASG 77 (603)
T ss_pred CcceEeccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeec
Confidence 3445566678888877764 4678888888765543 578999999999999999999999
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEe-cCCCCEEEEeCCCCcceeEeeccccCEEEEee
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 517 (1114)
...|+|+|||....+.+ ...+++.-.++|..++|+.|+++ ++++| +.++..+++-+++|.-+..+.||...|+++.|
T Consensus 78 D~sG~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~ 155 (603)
T KOG0318|consen 78 DVSGKVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDF 155 (603)
T ss_pred CCcCcEEEEeccCccee-eeeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeec
Confidence 99999999998764433 22367778899999999999996 33343 33444444444578889999999999999998
Q ss_pred ccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCe
Q 001248 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597 (1114)
Q Consensus 518 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 597 (1114)
-++.. -.+++|+.|++|.+|+-...+-..++..|...|.++.| +|||.++++++.||.
T Consensus 156 KpsRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy---------------------sPDG~~Fat~gsDgk 213 (603)
T KOG0318|consen 156 KPSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY---------------------SPDGSRFATAGSDGK 213 (603)
T ss_pred cCCCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEE---------------------CCCCCeEEEecCCcc
Confidence 77654 57999999999999975544444444455555555554 555558999999999
Q ss_pred EEEEECCCcceEEEec-cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCcc
Q 001248 598 IKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 676 (1114)
Q Consensus 598 i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1114)
|.+||-.+|+.+..+. ...|.+.|.+++|+||++.+++++.|.+++|||+.+. .+.+.+.-....
T Consensus 214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v------------- 279 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGSTV------------- 279 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCch-------------
Confidence 9999999999999997 3445668999999999999999999999999999988 565555321110
Q ss_pred chhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEE
Q 001248 677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 756 (1114)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 756 (1114)
-.......+....|++.+.+|.+.+++.......... .+|...|++
T Consensus 280 ---------------------------~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i-------~GHnK~ITa 325 (603)
T KOG0318|consen 280 ---------------------------EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI-------SGHNKSITA 325 (603)
T ss_pred ---------------------------hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee-------cccccceeE
Confidence 0111223445788999999999999998876533222 469999999
Q ss_pred EEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEE
Q 001248 757 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 836 (1114)
Q Consensus 757 l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 836 (1114)
+..++++++|++++.||.|.-|+...+.. - .+.+..|...|.+++.+..+.++.++
T Consensus 326 Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~----------------------~--~~~g~~h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 326 LTVSPDGKTIYSGSYDGHINSWDSGSGTS----------------------D--RLAGKGHTNQIKGMAASESGELFTIG 381 (603)
T ss_pred EEEcCCCCEEEeeccCceEEEEecCCccc----------------------c--ccccccccceEEEEeecCCCcEEEEe
Confidence 99999999999999999999998653321 1 13334599999999999888888888
Q ss_pred eCCeEEEEEcCCCccccc--cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCC
Q 001248 837 SGGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 914 (1114)
Q Consensus 837 ~dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 914 (1114)
-|.++++.++........ ++- .....+++..+ ++.+++..+.++.+.+=|...-. ... -.-...+++++|++
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~~~---~~~-~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISDIVLLQDQTKVS---SIP-IGYESSAVAVSPDG 455 (603)
T ss_pred cCCeEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCcEEEEecCCcce---eec-cccccceEEEcCCC
Confidence 899999999865433322 121 22234888888 66677767666555544443221 211 22346789999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCC
Q 001248 915 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRE 993 (1114)
Q Consensus 915 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 993 (1114)
..+|.|+.|+.|+||.+...+......+. .|. +.|+.++||||+.|||++ ..+.+.+||..+.+.... .-.-
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~---~h~---a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~F 528 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKLL---EHR---AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWAF 528 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeeee---ccc---CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc-eeee
Confidence 99999999999999999986643322221 222 589999999999999996 678999999998877322 2225
Q ss_pred CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEE
Q 001248 994 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1073 (1114)
Q Consensus 994 h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~ 1073 (1114)
|...|.+++|+|+.+++|+|+.|.+|.||+++.-.....++ ..|... |+ .+.|. |...|++.+.|.+|+
T Consensus 529 HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik------nAH~~g-Vn--~v~wl--de~tvvSsG~Da~iK 597 (603)
T KOG0318|consen 529 HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK------NAHLGG-VN--SVAWL--DESTVVSSGQDANIK 597 (603)
T ss_pred eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec------cccccC-ce--eEEEe--cCceEEeccCcceeE
Confidence 89999999999999999999999999999998776664444 222233 66 88888 578999999999999
Q ss_pred EEecc
Q 001248 1074 VFEPL 1078 (1114)
Q Consensus 1074 vW~i~ 1078 (1114)
+|.+.
T Consensus 598 ~W~v~ 602 (603)
T KOG0318|consen 598 VWNVT 602 (603)
T ss_pred Eeccc
Confidence 99975
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-50 Score=429.68 Aligned_cols=571 Identities=18% Similarity=0.296 Sum_probs=443.5
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
..+.+...|++++.||+|.. |++....|.+.+-++.....++.++| ..+|.|+.|||||
T Consensus 50 l~~e~~~NI~~ialSp~g~l-llavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v~~i~fSPng 108 (893)
T KOG0291|consen 50 LPLETRYNITRIALSPDGTL-LLAVDERGRALLVSLLSRSVLHRFNF--------------------KRGVGAIKFSPNG 108 (893)
T ss_pred EEeecCCceEEEEeCCCceE-EEEEcCCCcEEEEecccceeeEEEee--------------------cCccceEEECCCC
Confidence 44458899999999999995 66678889999999988877765444 3489999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCce-----eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc--eeEe
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYIF 505 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~ 505 (1114)
+++|.|.. +.+.||....... .....++.+|-..|.++.|+.|.+ +|++|+.|.++++|+++..+- .+.+
T Consensus 109 ~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l 185 (893)
T KOG0291|consen 109 KFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYAL 185 (893)
T ss_pred cEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEec
Confidence 99998864 5699998765332 234456789999999999999999 899999999999999986655 5678
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee-----cC---------CCCeeEEEEEecCCCeEEee
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EA---------PGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-----~~---------~~~~v~~~~~s~~g~~~~~~ 571 (1114)
.+|.+.|.+.-|.. +...+++.+.||.+.+|.....-....- .+ ....+....|..-. +.+-.
T Consensus 186 ~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~-k~~ln 262 (893)
T KOG0291|consen 186 NGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK-KHYLN 262 (893)
T ss_pred cCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEE-eeeec
Confidence 99999998877643 4467999999999999987732111000 00 00011111111111 11112
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCC-CcEEEEEccCC
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDG 650 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d-g~i~iwd~~~~ 650 (1114)
.....+.+.+|++..+.|+++-..|...+|++....+++.+....+ .|..++|+..|.+|+.|+.. |.+.+|+..+.
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 2235788999999999999999999999999999999999986644 79999999999999998764 78999987655
Q ss_pred ccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
. .+-
T Consensus 341 s-YVl--------------------------------------------------------------------------- 344 (893)
T KOG0291|consen 341 S-YVL--------------------------------------------------------------------------- 344 (893)
T ss_pred c-eee---------------------------------------------------------------------------
Confidence 1 111
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
..++|...+.+++++|||.+++++++||.|+|||.. +|.+...
T Consensus 345 ---------------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~----------------------SgfC~vT 387 (893)
T KOG0291|consen 345 ---------------KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ----------------------SGFCFVT 387 (893)
T ss_pred ---------------eccccccceeeEEECCCCcEEEeccCCCcEEEEecc----------------------CceEEEE
Confidence 113488899999999999999999999999998765 4544432
Q ss_pred cCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCC-CeEEEEEecCCCcEEEEEeCCC-cEEEE
Q 001248 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDS-SIQIY 887 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~la~g~~dg-~v~iw 887 (1114)
+. .|.+.|+.+.|+.+|+.+++.+ ||+|+.||+......+++..... ...|++..| .|.++.+|+.|. .|+||
T Consensus 388 -Ft--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvW 463 (893)
T KOG0291|consen 388 -FT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVW 463 (893)
T ss_pred -ec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEE
Confidence 22 3999999999999999999999 99999999999999999875433 467888988 899999998776 79999
Q ss_pred EcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 888 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 888 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
++++|+++..+.||.++|.+++|+|++..|||+|.|.||++||+-..... .+.+... ..+..++|+|||+.|
T Consensus 464 S~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-vEtl~i~-------sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 464 SVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-VETLEIR-------SDVLAVSFRPDGKEL 535 (893)
T ss_pred EeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-eeeEeec-------cceeEEEEcCCCCeE
Confidence 99999999999999999999999999999999999999999998764221 1222222 367999999999999
Q ss_pred EE-EeCCeEEEEEcCCCceeeeeec------------------CCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 968 LV-VHETQLAIFETTKLECVKQWVP------------------RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 968 ~~-~~d~~i~iwd~~~~~~~~~~~~------------------~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
++ .-||+|.+||.+.+..+..+.. .......+.+++|+||.+|++|+....|++|++.++-
T Consensus 536 aVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 536 AVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred EEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 99 5899999999987766544321 1124678999999999999999999999999999998
Q ss_pred eeEEeCCCcc----------------------------------------------cCCCCCCCCccceEEEecCCCCCe
Q 001248 1029 LRCRINPSAY----------------------------------------------LPAGVSSSNVHPLVIAAHPQEPNE 1062 (1114)
Q Consensus 1029 ~~~~~~~~~~----------------------------------------------~~~~~~~~~v~~~~~~~~~~d~~~ 1062 (1114)
++.++..+.. +...+....|.+.++.|+|. |+-
T Consensus 616 llkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt-gra 694 (893)
T KOG0291|consen 616 LLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPT-GRA 694 (893)
T ss_pred eeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCC-cCe
Confidence 7776652210 00012233577789999995 788
Q ss_pred EEEEeCCCcEEEEeccC
Q 001248 1063 FALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1063 l~s~~~Dg~v~vW~i~~ 1079 (1114)
++.++..| |.++.+.+
T Consensus 695 FAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 695 FAAATTEG-LLIYSLDT 710 (893)
T ss_pred eeeecccc-eEEEecCC
Confidence 88777666 35555543
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-53 Score=419.39 Aligned_cols=374 Identities=20% Similarity=0.342 Sum_probs=299.7
Q ss_pred CCCCCCcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCC
Q 001248 343 TPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 422 (1114)
Q Consensus 343 ~~~~~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 422 (1114)
.......+....-+|.+.|-|++|+|+|++ ||+|+.|.++++||+.+..... +.++|...
T Consensus 100 rvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~KgH~~W 159 (480)
T KOG0271|consen 100 RVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKGHKNW 159 (480)
T ss_pred cccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecCCccE
Confidence 333444445555669999999999999997 9999999999999999876655 58999999
Q ss_pred eeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecC-----CCCeeEEEEecCCCCEEEEeCC
Q 001248 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-----PNKQLCVITCGDDKTIKVWDAT 497 (1114)
Q Consensus 423 V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-----d~~~~~l~s~~~d~~i~iwd~~ 497 (1114)
|.|++|||||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|||+.
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTK 235 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEcc
Confidence 99999999999999999999999999999987765 6889999999999965 455 79999999999999999
Q ss_pred CCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
.+.++..+.||..+|+|++|-. + .++++|+.|++|++|+...+.....+.+|.+.|..++.+.|--
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~----------- 301 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV----------- 301 (480)
T ss_pred CceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh-----------
Confidence 9999999999999999999842 2 4999999999999999999889999999999999998877642
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
|-+|..|.+=+-....+......+.. .....-..+..|++|+.|.++.+|+....++.
T Consensus 302 -----------LRtgaf~~t~~~~~~~se~~~~Al~r-------Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkp---- 359 (480)
T KOG0271|consen 302 -----------LRTGAFDHTGRKPKSFSEEQKKALER-------YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP---- 359 (480)
T ss_pred -----------hhccccccccccCCChHHHHHHHHHH-------HHHhhccCcceeEEecCCceEEEecccccccc----
Confidence 22222221100000000000000000 00001112344555555555555543211111
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCC
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1114)
T Consensus 360 -------------------------------------------------------------------------------- 359 (480)
T KOG0271|consen 360 -------------------------------------------------------------------------------- 359 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCC
Q 001248 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 817 (1114)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~ 817 (1114)
+.+ +. +|
T Consensus 360 ----------------------------------------------------------------------i~r-mt--gH 366 (480)
T KOG0271|consen 360 ----------------------------------------------------------------------ITR-MT--GH 366 (480)
T ss_pred ----------------------------------------------------------------------hhh-hh--ch
Confidence 100 11 38
Q ss_pred CCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 818 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
..-|..+.||||++++|+++ |..|++|+..+|+.+.+|++|-..|..++|+. |.++|++|+.|.++++||+.+.++..
T Consensus 367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecc
Confidence 88899999999999999999 99999999999999999999999999999999 99999999999999999999999999
Q ss_pred eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
.+.||.++|.++.|+|||..+++|+.|+.+++|.
T Consensus 446 DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 446 DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999999994
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-48 Score=401.64 Aligned_cols=541 Identities=17% Similarity=0.214 Sum_probs=426.8
Q ss_pred ceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 350 ~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
.+...-.|...++-..|||.|-| +|+|...|+|+|||....+.+....|+ .-.++|..++|+
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd 112 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWD 112 (603)
T ss_pred ceeeeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeC
Confidence 34455569999999999999996 999999999999999876555444433 335599999999
Q ss_pred CCCCeEEEEeCC----CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 430 PDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 430 pdg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
+|+++|++.+.. |.+.+|| +|..+. ++.||...|++++|-|.-.+ .++||++|++|.+|+=.--+...++
T Consensus 113 ~ds~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~ 186 (603)
T KOG0318|consen 113 FDSKRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSF 186 (603)
T ss_pred CCCcEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecc
Confidence 999999988653 3455565 555455 78999999999999998776 7999999999999986555666788
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec---CCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
..|...|.++.|+ |||.++++.+.||++.+||-.+++....+. +|.+.|.+++|+||++
T Consensus 187 r~HskFV~~VRys--PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~---------------- 248 (603)
T KOG0318|consen 187 REHSKFVNCVRYS--PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST---------------- 248 (603)
T ss_pred cccccceeeEEEC--CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc----------------
Confidence 8899999999975 557899999999999999999998888776 6777777777777766
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCC-CCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccc
Q 001248 583 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 661 (1114)
Q Consensus 583 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 661 (1114)
.+++++.|.+++|||+.+.+++.++...... .....+-|- ...|++.+.+|+|.+++...+. ..+.+.+|.
T Consensus 249 -----~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~-~~~~i~GHn 320 (603)
T KOG0318|consen 249 -----QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS-VLKVISGHN 320 (603)
T ss_pred -----eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC-hhheecccc
Confidence 7999999999999999999999998754431 223345554 6678999999999999999994 889999998
Q ss_pred cccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccc
Q 001248 662 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 741 (1114)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 741 (1114)
..+... ...+++.++++++.||.|.-|+...+......
T Consensus 321 K~ITaL-----------------------------------------tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~- 358 (603)
T KOG0318|consen 321 KSITAL-----------------------------------------TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA- 358 (603)
T ss_pred cceeEE-----------------------------------------EEcCCCCEEEeeccCceEEEEecCCccccccc-
Confidence 865532 23457799999999999999999876544332
Q ss_pred ccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCc
Q 001248 742 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 821 (1114)
Q Consensus 742 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v 821 (1114)
...|...|.+++.+..+. +++.+.|.++++.++......... .. ......
T Consensus 359 -----g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~-----------------~~-------~lg~QP 408 (603)
T KOG0318|consen 359 -----GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE-----------------VV-------KLGSQP 408 (603)
T ss_pred -----cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc-----------------ee-------ecCCCc
Confidence 245899999999988776 778888889998876533221110 00 023445
Q ss_pred cEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE--Eeec
Q 001248 822 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLK 899 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~--~~l~ 899 (1114)
.+++..+|+.+++..+++.|.+..-.+ .+.+.. ..-...++|++| ++..+|+|+.||.|+||.+..+.+. ..+.
T Consensus 409 ~~lav~~d~~~avv~~~~~iv~l~~~~--~~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~ 484 (603)
T KOG0318|consen 409 KGLAVLSDGGTAVVACISDIVLLQDQT--KVSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLL 484 (603)
T ss_pred eeEEEcCCCCEEEEEecCcEEEEecCC--cceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeee
Confidence 589999999888888877777665322 222222 334578999999 9999999999999999999876543 4567
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEE
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIF 978 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iw 978 (1114)
.|.++|++++||||+.+||+|...+.+.+||+.+.+... ....-|. ..|.+++|+|+.+++|+ +-|..|.||
T Consensus 485 ~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~----~~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 485 EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT----NRWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred cccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec----ceeeeee---eeEEEEEeCCCceEEEeccccceEEEE
Confidence 799999999999999999999999999999999976521 1122233 47999999999999999 589999999
Q ss_pred EcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001248 979 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 979 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
+++.-... .....+|...|+.+.|- |...|++.+.|..|++|++.
T Consensus 558 sv~kP~~~-i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 558 SVKKPAKH-IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EccChhhh-eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 99876554 33345888889999997 55578888899999999864
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-48 Score=415.67 Aligned_cols=605 Identities=14% Similarity=0.214 Sum_probs=447.0
Q ss_pred cCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEE
Q 001248 367 HPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 446 (1114)
Q Consensus 367 spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~i 446 (1114)
+..|++ ++++....|.+||+.+|+..... ....-...|+|+.-+||.-.||+|..||.|+|
T Consensus 31 ~~~Gr~--va~~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqi 91 (888)
T KOG0306|consen 31 SGKGRA--VAVSALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVGYADGSVQI 91 (888)
T ss_pred cCCCcE--EEEeccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEEecCceEEe
Confidence 345885 33445678999999999554320 12233458999999999999999999999999
Q ss_pred EEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEE
Q 001248 447 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 526 (1114)
Q Consensus 447 wd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 526 (1114)
|+..++.... ++.||...|+++.|...|. .|+|||.|+.|.+||+-...-+..+.||...|+..-|.. +.+++
T Consensus 92 f~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~l 164 (888)
T KOG0306|consen 92 FSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFL 164 (888)
T ss_pred eccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEE
Confidence 9999876444 7999999999999999999 799999999999999998888999999999999877644 33799
Q ss_pred EEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCc
Q 001248 527 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 606 (1114)
Q Consensus 527 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 606 (1114)
++.+.|+.|++||+.+..+..+...|...+..+++.+ +.+++++.|+.+++|++...
T Consensus 165 vS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-----------------------~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 165 VSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-----------------------KLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred EEeccCceEEEEecccceeeeEEecccceEEEEEEec-----------------------ceEEEEecCCceEEEEeecc
Confidence 9999999999999999888888888888888887766 25899999999999998321
Q ss_pred ------------ceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCC
Q 001248 607 ------------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1114)
Q Consensus 607 ------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1114)
+...++...+ .+....++..++++++++-+.|..+.++.+.+..+..+.+.........-.. .. .
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~-t~-e 298 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQS-KGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAE-TE-E 298 (888)
T ss_pred cccccccccceeeccceeeecc-CCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcc-cc-c
Confidence 0111222111 2234567777889999999999999999998764443333220000000000 00 0
Q ss_pred ccchhhhhhhhccccccccccccccccCCC-CCCccccCCC-cccccccCCCceeEEEeccCC-C-CccccccccCcccc
Q 001248 675 ISPISAAAAAAATSAGLADRAASMVSIPGM-NGDVRSLADV-KPRITEESNDKSKVWKLTELS-E-PNQCRSLRLPENLR 750 (1114)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~-~-~~~~~~~~~~~~~~ 750 (1114)
...+...... ....+...+....-. ..+....... ..++. -.++++..|.++... . +...+.-.+...+|
T Consensus 299 -~~~~v~~sl~----~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GH 372 (888)
T KOG0306|consen 299 -NEDDVEKSLS----DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGH 372 (888)
T ss_pred -cccchhhhHH----HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccc
Confidence 0000000000 000000000000000 0000001111 22333 556778888777611 1 11111222223569
Q ss_pred ccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC
Q 001248 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~ 830 (1114)
...|.++++|.+...+++++ ++.+++|+.. +.++++.. ....+.+..|-|.+
T Consensus 373 R~dVRsl~vS~d~~~~~Sga-~~SikiWn~~----------------------t~kciRTi-----~~~y~l~~~Fvpgd 424 (888)
T KOG0306|consen 373 RSDVRSLCVSSDSILLASGA-GESIKIWNRD----------------------TLKCIRTI-----TCGYILASKFVPGD 424 (888)
T ss_pred hhheeEEEeecCceeeeecC-CCcEEEEEcc----------------------CcceeEEe-----ccccEEEEEecCCC
Confidence 99999999999987555544 5577777643 55554432 23467888999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-----ceEEEeec-----
Q 001248 831 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----DEVKSKLK----- 899 (1114)
Q Consensus 831 ~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-----~~~~~~l~----- 899 (1114)
+++++|. .|.+.+||+.+...+.+.+.|.+.|..++.+| |+..+++|+.|.+|++||+.- |...+.+.
T Consensus 425 ~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 425 RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 9999999 79999999999999999999999999999999 999999999999999999752 11111111
Q ss_pred --ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEE
Q 001248 900 --GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLA 976 (1114)
Q Consensus 900 --~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~ 976 (1114)
.-.+.|.|+.+||||++||.+--|.+|+||-+++ ......+.||.. +|.++..|||++++++ +.|+.|+
T Consensus 504 tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-----lKFflsLYGHkL---PV~smDIS~DSklivTgSADKnVK 575 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-----LKFFLSLYGHKL---PVLSMDISPDSKLIVTGSADKNVK 575 (888)
T ss_pred EEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-----eeeeeeeccccc---ceeEEeccCCcCeEEeccCCCceE
Confidence 1346799999999999999999999999999998 334556678775 8999999999999999 6899999
Q ss_pred EEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEec
Q 001248 977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1056 (1114)
Q Consensus 977 iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1056 (1114)
||-+.-|.|-+++. +|...|.++.|-|+..++++++.|+.|+-||-...+.+..+. +|+.. ++ +++-+
T Consensus 576 iWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~~e-v~--cLav~ 643 (888)
T KOG0306|consen 576 IWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHHSE-VW--CLAVS 643 (888)
T ss_pred Eeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cchhe-ee--eeEEc
Confidence 99999999999998 899999999999999999999999999999999999998887 66555 77 67777
Q ss_pred CCCCCeEEEEeCCCcEEEEeccC
Q 001248 1057 PQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1057 ~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
| +|.++++++.|.+|++|.-.+
T Consensus 644 ~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 644 P-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred C-CCCeEEeccCCceeEeeeccC
Confidence 8 689999999999999999766
No 10
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-47 Score=408.51 Aligned_cols=514 Identities=13% Similarity=0.204 Sum_probs=406.7
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
...+|+|+.-+||.- +||.|..||.|+||+..++.... .+.||..+|+++.|+..|.+||
T Consensus 64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngHK~AVt~l~fd~~G~rla 123 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGHKAAVTTLKFDKIGTRLA 123 (888)
T ss_pred ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eecccccceEEEEEcccCceEe
Confidence 446899999999987 69999999999999999886654 4889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEe
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1114)
+||.|+.|.+||+-....+. .+.||...|+.+-|..+.+ ++++.+.|+.|++||+++..|..+...|.+.+++++
T Consensus 124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~ 198 (888)
T KOG0306|consen 124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV 198 (888)
T ss_pred ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence 99999999999998765444 6899999999999998777 899999999999999999999999999999999999
Q ss_pred eccCCCceEEEEEecCCeEEEEEcCCCCCe------e------e-ecCCCCeeEEEEEecCCCeEEee------------
Q 001248 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSR------V------D-YEAPGRWCTTMAYSADGTRTYQG------------ 571 (1114)
Q Consensus 517 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~------~-~~~~~~~v~~~~~s~~g~~~~~~------------ 571 (1114)
+.. +.+++++.|+.+++|++....-. . . .....+....+...++++.++..
T Consensus 199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~ 274 (888)
T KOG0306|consen 199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR 274 (888)
T ss_pred Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence 754 58999999999999998221100 0 0 01111122223333333311000
Q ss_pred -------------------------------------------ecccceeEEEecCCCC---EEEEEeCCCeEEEEECCC
Q 001248 572 -------------------------------------------FRKRSLGVVQFDTTKN---RFLAAGDDFSIKFWDMDS 605 (1114)
Q Consensus 572 -------------------------------------------~~~~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~ 605 (1114)
.....+..+.+.|.++ .|+. -.++++..|.+..
T Consensus 275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~ 353 (888)
T KOG0306|consen 275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLEN 353 (888)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEecc
Confidence 0112344455555442 3333 6678888887765
Q ss_pred -cc------eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccch
Q 001248 606 -VQ------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 678 (1114)
Q Consensus 606 -~~------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1114)
+. .+..+...+|...|.++++|.+...+++|+. +.+++|+..+. ++++++.
T Consensus 354 s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~-kciRTi~-------------------- 411 (888)
T KOG0306|consen 354 SGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTL-KCIRTIT-------------------- 411 (888)
T ss_pred CCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCc-ceeEEec--------------------
Confidence 21 2334555566778999999998887777665 78999998887 5555442
Q ss_pred hhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEE
Q 001248 679 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 758 (1114)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 758 (1114)
...+.+..
T Consensus 412 ------------------------------------------------------------------------~~y~l~~~ 419 (888)
T KOG0306|consen 412 ------------------------------------------------------------------------CGYILASK 419 (888)
T ss_pred ------------------------------------------------------------------------cccEEEEE
Confidence 23567788
Q ss_pred EccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-
Q 001248 759 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS- 837 (1114)
Q Consensus 759 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 837 (1114)
|-|.+++++.|..+|.+.+||+.. ..++.. .. .|.+.|.+++.+||++.+++|+
T Consensus 420 Fvpgd~~Iv~G~k~Gel~vfdlaS----------------------~~l~Et-i~--AHdgaIWsi~~~pD~~g~vT~sa 474 (888)
T KOG0306|consen 420 FVPGDRYIVLGTKNGELQVFDLAS----------------------ASLVET-IR--AHDGAIWSISLSPDNKGFVTGSA 474 (888)
T ss_pred ecCCCceEEEeccCCceEEEEeeh----------------------hhhhhh-hh--ccccceeeeeecCCCCceEEecC
Confidence 999999999999999999998753 222111 11 3999999999999999999999
Q ss_pred CCeEEEEEcCC-----CccccccC-------CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCe
Q 001248 838 GGKISLFNMMT-----FKTMATFM-------PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 905 (1114)
Q Consensus 838 dg~i~iwd~~~-----~~~~~~~~-------~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V 905 (1114)
|.+|++||..- +...+.+. ..+..|.|+.+|| |+++||++--|.+|+||-+.+.+..-.+.||.-+|
T Consensus 475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccce
Confidence 99999999741 22211111 1356799999999 99999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCc
Q 001248 906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 984 (1114)
Q Consensus 906 ~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~ 984 (1114)
.|+..|||++.++|||.|.+|+||-++-|.+ -+.+-+|. ++|+++.|-|+..++.+ |.|+.++-||-.+.+
T Consensus 554 ~smDIS~DSklivTgSADKnVKiWGLdFGDC-----HKS~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSADKNVKIWGLDFGDC-----HKSFFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred eEEeccCCcCeEEeccCCCceEEeccccchh-----hhhhhccc---CceeEEEEcccceeEEEecCcceEEeechhhhh
Confidence 9999999999999999999999999998664 33444554 48999999999888877 799999999999999
Q ss_pred eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeee
Q 001248 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 985 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
++..+. +|...|+|++.+|+|.+++++|.|.+|++|......++
T Consensus 626 ~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 626 EIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI 669 (888)
T ss_pred hheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence 998876 89999999999999999999999999999997664443
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-49 Score=392.42 Aligned_cols=367 Identities=20% Similarity=0.280 Sum_probs=291.0
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.||.++|.|++|||+|+.||+|+.|.++++||+.+..... +..+|...|.|++|+|||+ .|++|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 478999999999999999999999999999999999987555 8999999999999999999 79999999999999
Q ss_pred eCCCCcce-eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 495 DATNGAKQ-YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 495 d~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
|.++|+++ ..+.+|...|++++|.|-. ++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~h----l~---------------------------------------------- 214 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLH----LV---------------------------------------------- 214 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccc----cC----------------------------------------------
Confidence 99999876 5899999999999986532 11
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
|..++|++++.||.|+|||+..+.++..+.+| +..|+|+.|..+| ++++|+.|++|++|+...| .+
T Consensus 215 ----------p~~r~las~skDg~vrIWd~~~~~~~~~lsgH--T~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG-~~ 280 (480)
T KOG0271|consen 215 ----------PPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH--TASVTCVRWGGEG-LIYSGSQDRTIKVWRALDG-KL 280 (480)
T ss_pred ----------CCccceecccCCCCEEEEEccCceEEEEeccC--ccceEEEEEcCCc-eEEecCCCceEEEEEccch-hH
Confidence 11225889999999999999999999999877 5689999998765 8999999999999999888 67
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
.+.+.+|..
T Consensus 281 ~r~lkGHah----------------------------------------------------------------------- 289 (480)
T KOG0271|consen 281 CRELKGHAH----------------------------------------------------------------------- 289 (480)
T ss_pred HHhhcccch-----------------------------------------------------------------------
Confidence 777766554
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
.|..++.+.+-- |-++.-| +.+...... + +.....+.
T Consensus 290 -------------------wvN~lalsTdy~-LRtgaf~--------------~t~~~~~~~--------s-e~~~~Al~ 326 (480)
T KOG0271|consen 290 -------------------WVNHLALSTDYV-LRTGAFD--------------HTGRKPKSF--------S-EEQKKALE 326 (480)
T ss_pred -------------------heeeeeccchhh-hhccccc--------------cccccCCCh--------H-HHHHHHHH
Confidence 344444333211 1111111 111000000 0 00000000
Q ss_pred CCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcC-CCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
-+..+.-..+..+++|+ |.++.+|+-. +.+++..+.+|...|..+.||| |++++|+++.|..|++||..+
T Consensus 327 -------rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 327 -------RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred -------HHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCC
Confidence 00111223557899999 7899999976 4457888999999999999999 999999999999999999999
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 971 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~ 971 (1114)
|+.+..|+||-+.|+.++||.|.++|+|||.|.++++|++.+.+. ..
T Consensus 399 Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-----~~---------------------------- 445 (480)
T KOG0271|consen 399 GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-----KQ---------------------------- 445 (480)
T ss_pred cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-----cc----------------------------
Confidence 999999999999999999999999999999999999999988332 11
Q ss_pred CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 972 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 972 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
.+.+|...|.++.|+|||+.+++|+.|+.+++|.
T Consensus 446 ------------------DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 446 ------------------DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ------------------cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 1237888888888999998888888888888884
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-45 Score=393.45 Aligned_cols=546 Identities=15% Similarity=0.235 Sum_probs=422.3
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCC
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 441 (1114)
-.+.|++||.. +.+ ...+.|.++|+..++... +.-.+...|.+++.||+|.+|++....
T Consensus 18 Gnl~ft~dG~s-viS-PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~ 76 (893)
T KOG0291|consen 18 GNLVFTKDGNS-VIS-PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER 76 (893)
T ss_pred CcEEECCCCCE-EEe-ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence 45789999996 433 457899999998765533 123466789999999999999999999
Q ss_pred CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc--------ceeEeeccccCEE
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--------KQYIFEGHEAPVY 513 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~h~~~v~ 513 (1114)
|...+-++.....++ .+ ....+|.|+.|||||+ ++|.|. .+.+.||...... ..+++.+|-..|.
T Consensus 77 g~~~lvs~~~r~Vlh---~f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~ 149 (893)
T KOG0291|consen 77 GRALLVSLLSRSVLH---RF-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT 149 (893)
T ss_pred CcEEEEecccceeeE---EE-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence 999888887755443 22 2356899999999999 455443 5689999865322 2356789999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCe--eeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
++.|+. |.++|++|+.|.++++|.++..+.. ..+.+|...|....|..+ ...+++
T Consensus 150 si~Ws~--DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~---------------------~~~l~t 206 (893)
T KOG0291|consen 150 SIDWSD--DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN---------------------SLDLYT 206 (893)
T ss_pred EEEecc--CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccC---------------------cceEEE
Confidence 999865 4479999999999999999876653 344555555555544444 446999
Q ss_pred EeCCCeEEEEECCCc-----------------------ce-----EE----EeccCCCCCCcCeEEEcCCCCEEEEEeCC
Q 001248 592 AGDDFSIKFWDMDSV-----------------------QL-----LT----SIDADGGLPASPRIRFNKDGCLLAVSTND 639 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~-----------------------~~-----~~----~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 639 (1114)
.+.||.+.+|..... +. .. ..-.......+++.+|++.-+.|++|-..
T Consensus 207 vskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss 286 (893)
T KOG0291|consen 207 VSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS 286 (893)
T ss_pred EecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence 999999999987611 10 00 00011112467888888888888888888
Q ss_pred CcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccccc
Q 001248 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 719 (1114)
Q Consensus 640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1114)
|.+.+|++.+- .++..+.
T Consensus 287 G~f~LyelP~f-~lih~LS------------------------------------------------------------- 304 (893)
T KOG0291|consen 287 GEFGLYELPDF-NLIHSLS------------------------------------------------------------- 304 (893)
T ss_pred CeeEEEecCCc-eEEEEee-------------------------------------------------------------
Confidence 88888876544 2222220
Q ss_pred ccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccC-ceEEEEeecccccCCCCCcccccccc
Q 001248 720 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQ 798 (1114)
Q Consensus 720 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~ 798 (1114)
....+|..++|+..|..++.++.. |.+.||+++.+.+-
T Consensus 305 -----------------------------is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYV------------ 343 (893)
T KOG0291|consen 305 -----------------------------ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYV------------ 343 (893)
T ss_pred -----------------------------cccceeeEEEecccCCEEEEcCCccceEEEEEeecccee------------
Confidence 134678999999999999999887 99999998754321
Q ss_pred ccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEE
Q 001248 799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 877 (1114)
Q Consensus 799 ~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~ 877 (1114)
++..+|...+++++++|||+++|+|+ ||+|+|||..++-|..++..|...|+.+.|+. .++.+++
T Consensus 344 -------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~lls 409 (893)
T KOG0291|consen 344 -------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLS 409 (893)
T ss_pred -------------eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEE
Confidence 22335999999999999999999999 89999999999999999999999999999999 9999999
Q ss_pred EeCCCcEEEEEcccceEEEeecccc-cCeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCCccccccccccCCCCCCCCCCc
Q 001248 878 GMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 955 (1114)
Q Consensus 878 g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 955 (1114)
.+-||+|+.||+...+..+++.... -...+|+..|.|..+..|+.|. .|.+|++++|+ .+.++.||. ++|
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHE---gPV 481 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHE---GPV 481 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCC---Ccc
Confidence 9999999999999999998887543 3456788888899999999886 59999999965 477888887 599
Q ss_pred eEEEEccCCcEEEE-EeCCeEEEEEcCCCc-eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEe
Q 001248 956 TRVQFHQDQIHFLV-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 956 ~~v~fspdg~~l~~-~~d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1033 (1114)
.+++|+|+|..|++ +-|++|++||+-... .+.++ .+...++.++|+|||+-|+++..||.|.+||...+.....+
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 99999999999999 689999999986553 23333 34778999999999999999999999999999988777555
Q ss_pred CCCcccCCCC----------CCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC--CcccCC
Q 001248 1034 NPSAYLPAGV----------SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVP 1087 (1114)
Q Consensus 1034 ~~~~~~~~~~----------~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~--~~~~~~ 1087 (1114)
.....+..|. ....-.-.+++|++ ||..|++|+..+.|+++++.++. .+|+..
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~vllkkfqiS 623 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEGVLLKKFQIS 623 (893)
T ss_pred cchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchhheeeeEEec
Confidence 4322222221 11123345899999 79999999999999999999987 445443
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4e-45 Score=387.16 Aligned_cols=627 Identities=15% Similarity=0.184 Sum_probs=417.2
Q ss_pred ceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe-
Q 001248 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY- 439 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 439 (1114)
-..++.+|-.. ++|. -....|.+||+...+.-+ ++..|..+++|+|||++|+|+|+|-
T Consensus 40 ~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc 98 (1080)
T KOG1408|consen 40 ANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC 98 (1080)
T ss_pred CCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence 35566666655 3443 234678899987654433 5778888999999999999999984
Q ss_pred -CCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC--CCCEEEEeCCCCcceeEeeccccCEEEEe
Q 001248 440 -SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1114)
Q Consensus 440 -~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1114)
....++||++.....+. +|..|.-.|+|++|+|.++ |+++.+. |-.|.+||++.......-+ -...|..++
T Consensus 99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~ 172 (1080)
T KOG1408|consen 99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVA 172 (1080)
T ss_pred CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEE
Confidence 56679999999877555 7889999999999999999 6776664 4568889887554333222 346788888
Q ss_pred eccCCCceEEEEEecCCeEEEEEcCCCCCeee---ecCCC-----------------C---eeEEEEEecCCCeE-----
Q 001248 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVD---YEAPG-----------------R---WCTTMAYSADGTRT----- 568 (1114)
Q Consensus 517 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~~~-----------------~---~v~~~~~s~~g~~~----- 568 (1114)
| +.+|.|+++.+ ...|++|.++....... +.+.. . .-...+++..|...
T Consensus 173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsR 249 (1080)
T KOG1408|consen 173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSR 249 (1080)
T ss_pred E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechh
Confidence 6 56778998876 67899999876552210 00000 0 01223333333210
Q ss_pred --E---eeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEecc----------------------CCCCCCc
Q 001248 569 --Y---QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA----------------------DGGLPAS 621 (1114)
Q Consensus 569 --~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~~~v 621 (1114)
+ ...+...-.|++++ .+++++|+.+|.|++|+..+.....++.. .......
T Consensus 250 RLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~ 327 (1080)
T KOG1408|consen 250 RLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDA 327 (1080)
T ss_pred hhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCce
Confidence 0 00111223344444 45899999999999999877554444321 1112334
Q ss_pred CeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccccccccc
Q 001248 622 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSI 701 (1114)
Q Consensus 622 ~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1114)
..+.|++....|.+..+|..+++||+++-.+.-+... ...
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s---~ly------------------------------------- 367 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS---MLY------------------------------------- 367 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceee---eee-------------------------------------
Confidence 5788999999999999999999999987643322110 000
Q ss_pred CCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeec
Q 001248 702 PGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 781 (1114)
Q Consensus 702 ~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~ 781 (1114)
....||+++...... |.... +.-|.+. +++++.|++||+|++.
T Consensus 368 ----------------------HS~ciW~Ve~~p~nv-----------~~~~~---aclp~~c-F~TCSsD~TIRlW~l~ 410 (1080)
T KOG1408|consen 368 ----------------------HSACIWDVENLPCNV-----------HSPTA---ACLPRGC-FTTCSSDGTIRLWDLA 410 (1080)
T ss_pred ----------------------ccceeeeeccccccc-----------cCccc---ccCCccc-eeEecCCCcEEEeecc
Confidence 122344444321100 00000 0011111 4444444445555444
Q ss_pred ccccCCC--CCccccc--cc--------cccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC
Q 001248 782 RTERNSS--GKATASV--AP--------QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 848 (1114)
Q Consensus 782 ~~~~~~~--~~~~~~~--~~--------~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~ 848 (1114)
....+.. .+.+... ++ .+.|...+-.-.......+....+.++++||+|++||+|. .|+|+||++..
T Consensus 411 ~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~ 490 (1080)
T KOG1408|consen 411 FCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE 490 (1080)
T ss_pred cccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh
Confidence 3111000 0000000 00 0001111110000011112566799999999999999999 89999999999
Q ss_pred CccccccCCCCCCeEEEEEecC--CCcEEEEEeCCCcEEEEEccc-ceEEEeecccccCeeEEEEcCCC--CEEEEEeCC
Q 001248 849 FKTMATFMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHAL--NVLVSSGAD 923 (1114)
Q Consensus 849 ~~~~~~~~~~~~~i~~l~~sp~--d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~--~~l~s~s~D 923 (1114)
.+.+..+..|+.+|.|+.||-. ..++||+++.|..|+|||+.. ..++.++.+|+..|++|.|.-.| ..+++++.|
T Consensus 491 l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGAD 570 (1080)
T KOG1408|consen 491 LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD 570 (1080)
T ss_pred hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence 9999999999999999999852 357999999999999999975 46778999999999999998776 789999999
Q ss_pred CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeec-CCCCcCeeEE
Q 001248 924 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVP-RESSAPITHA 1001 (1114)
Q Consensus 924 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~l 1001 (1114)
+.|.+- ...... ...+-....+......+..++..|..+++++ +.|+.|+||++..++..+.|.. ++|.+....+
T Consensus 571 ksimFr-~~qk~~--~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 571 KSIMFR-VNQKAS--SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred hhhhee-hhcccc--CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence 977643 322111 0111111112222356789999999999999 7999999999999999999974 3566788899
Q ss_pred EECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1002 TFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1002 ~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
...|.|-|||+.+.|+++.++|+.+|+++.+.. ||... |. .+.|.+ |.+.|++++.||+|+||.++...
T Consensus 648 ~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-------GHsE~-VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-------GHSEA-VT--GVKFLN-DCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred EECCCccEEEEeecCCceEEEEeccchhhhhhc-------Ccchh-ee--eeeecc-cchhheeecCCceEEEEECchhH
Confidence 999999999999999999999999999998876 44233 44 899999 68999999999999999998744
Q ss_pred -----CcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001248 1082 -----GKWGVPPPVDNGSTSSMPATPPVGGSGSD 1110 (1114)
Q Consensus 1082 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1110 (1114)
.+....+-...+.....|.+|.+++.+++
T Consensus 717 ii~m~~r~~~lr~rq~~~~~~~pl~p~~p~d~~~ 750 (1080)
T KOG1408|consen 717 IIRMVNRNGRLRVRQLEKFIAVPLEPDNPNDASC 750 (1080)
T ss_pred hHHHHHHhhHHHHHhccCCcCCCCCCCCCCCCcc
Confidence 22222344455555666666666666554
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.5e-41 Score=355.91 Aligned_cols=546 Identities=13% Similarity=0.151 Sum_probs=375.5
Q ss_pred CCCCceEEEEcCCCCeEEEEEe--cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~--~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
|...++|++||++|+| +|+|- ....++||++.....+. -+..|.-.|+|++|||.++|
T Consensus 77 sRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVA-------------------EfvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVA-------------------EFVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchh-------------------hhhhccccceeeeecCCCcE
Confidence 8889999999999997 99986 45579999998876554 27789999999999999999
Q ss_pred EEEEeC--CCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE--------
Q 001248 435 FGVAYS--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-------- 504 (1114)
Q Consensus 435 las~~~--dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------- 504 (1114)
+++.+. |..|.+||++...... -+.-...|..++|+.||. |++|.+ ...|++|.++.++....
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998765 5678899887543332 223355799999999999 788877 57899999876551110
Q ss_pred -----e------------------------ecc-----------------ccCEEEEeeccCCCceEEEEEecCCeEEEE
Q 001248 505 -----F------------------------EGH-----------------EAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1114)
Q Consensus 505 -----~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 538 (1114)
+ .|| ...-.|++++ ..++++|+.+|.|+++
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs----~r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS----SRLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee----cceEEEeeccceeeec
Confidence 0 011 0112233432 2689999999999999
Q ss_pred EcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeeccc---ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEe-cc
Q 001248 539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR---SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI-DA 614 (1114)
Q Consensus 539 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~ 614 (1114)
+..+.....++.....--..++--.+-...+.+.... ..-.+.|++....|.+...|..++|||++.-..+... ..
T Consensus 286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ 365 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM 365 (1080)
T ss_pred CcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeee
Confidence 8877655444432211000000000011111111111 2234678888899999999999999999874433211 11
Q ss_pred CCCCCCcCeEEEcC-----------CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhh
Q 001248 615 DGGLPASPRIRFNK-----------DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 683 (1114)
Q Consensus 615 ~~~~~~v~~~~~s~-----------d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1114)
-.|...|+.+.--| -...+++++.|++|++|++..+.. -..+......
T Consensus 366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn-n~vyrRNils-------------------- 424 (1080)
T KOG1408|consen 366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN-NQVYRRNILS-------------------- 424 (1080)
T ss_pred eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc-cceeecccch--------------------
Confidence 11222344443333 023588999999999999876411 0111000000
Q ss_pred hhccccccccccccccccCCCCCCccccCCCcccccccCCCce--------eEEEeccCCCCccccccccCccccccceE
Q 001248 684 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS--------KVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1114)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i--------~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1114)
.+.+-.-..|++. -++|-.. .........+.
T Consensus 425 ------------------------------~~l~ki~y~d~~~q~~~d~~~~~fdka~-----------~s~~d~r~G~R 463 (1080)
T KOG1408|consen 425 ------------------------------ANLSKIPYEDSTQQIMHDASAGIFDKAL-----------VSTCDSRFGFR 463 (1080)
T ss_pred ------------------------------hhhhcCccccCchhhhhhccCCcccccc-----------hhhcCcccceE
Confidence 0000000001111 1111110 00012456789
Q ss_pred EEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee---CCCE
Q 001248 756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSY 832 (1114)
Q Consensus 756 ~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~---d~~~ 832 (1114)
+++++|+|+.|+++..-|.++||+++.-.. + .....|+..|.|+.||. ..++
T Consensus 464 ~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~----------------------~---~~~eAHesEilcLeyS~p~~~~kL 518 (1080)
T KOG1408|consen 464 ALAVSPDGQHLASGDRGGNLRVYDLQELEY----------------------T---CFMEAHESEILCLEYSFPVLTNKL 518 (1080)
T ss_pred EEEECCCcceecccCccCceEEEEehhhhh----------------------h---hheecccceeEEEeecCchhhhHh
Confidence 999999999999999999999999864221 0 11123999999999985 3478
Q ss_pred EEEEe-CCeEEEEEcC-CCccccccCCCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEEcccceEEEeeccc-----ccC
Q 001248 833 VMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-----SKR 904 (1114)
Q Consensus 833 l~~~~-dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~-~~la~g~~dg~v~iwd~~~~~~~~~l~~h-----~~~ 904 (1114)
||+++ |.-|+|||+. +..++.++.+|...|+++.|.-.++ ..+++++.|..|.+--..+..-...+..| ...
T Consensus 519 LASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT 598 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT 598 (1080)
T ss_pred hhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccce
Confidence 99999 8999999997 4567789999999999999987332 56777888887765443321111222211 346
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCC
Q 001248 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKL 983 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~ 983 (1114)
++.++..|..+++++++.|+.|+||++++++. .+.+++.....+....+...|.|.|||+ +.|+++.++|.-++
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-----VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccce-----eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 88999999999999999999999999999765 3445555555567889999999999999 69999999999999
Q ss_pred ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCC
Q 001248 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
+|+.+.. ||+..|+.+.|++|.+.|++++.||+|.||.+...
T Consensus 674 EcvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 674 ECVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred hhhhhhc--CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 9999887 99999999999999999999999999999998753
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-40 Score=339.01 Aligned_cols=357 Identities=18% Similarity=0.327 Sum_probs=281.9
Q ss_pred CCCcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeE
Q 001248 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1114)
Q Consensus 346 ~~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1114)
++|....+.+.|+.+|.+.+|+|-..-+|++|+.|-+.++|++........ ..-++..|....-. -..-...|++
T Consensus 166 ~I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~---~q~~lrh~~~~~~~--s~~~nkdVT~ 240 (524)
T KOG0273|consen 166 EIPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGS---TQLVLRHCIREGGK--SVPSNKDVTS 240 (524)
T ss_pred cccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccc---hhhhhhhhhhhhcc--cCCccCCcce
Confidence 457777788889999999999998776799999999999999875111110 00000000000000 0112357999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
++|+.+|..||+|+.||.++||+..... +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|...+.+
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEee
Confidence 9999999999999999999999987653 33 6889999999999999999 8999999999999999999988888
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
.-|..+-..+.|-.. .
T Consensus 315 ~~~s~~~lDVdW~~~---~------------------------------------------------------------- 330 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSN---D------------------------------------------------------------- 330 (524)
T ss_pred eeccCCccceEEecC---c-------------------------------------------------------------
Confidence 877766444444211 1
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccc
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1114)
.+++.+.|+.|+++.+....++.++.+| ...|.++.|+|.|.+|++++.|++++||..... .....+
T Consensus 331 --~F~ts~td~~i~V~kv~~~~P~~t~~GH--~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l-------- 397 (524)
T KOG0273|consen 331 --EFATSSTDGCIHVCKVGEDRPVKTFIGH--HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDL-------- 397 (524)
T ss_pred --eEeecCCCceEEEEEecCCCcceeeecc--cCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhh--------
Confidence 2666677777777777777888888875 458999999999999999999999999987655 222222
Q ss_pred cCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccccccc
Q 001248 666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 745 (1114)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 745 (1114)
T Consensus 398 -------------------------------------------------------------------------------- 397 (524)
T KOG0273|consen 398 -------------------------------------------------------------------------------- 397 (524)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEE
Q 001248 746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1114)
Q Consensus 746 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~ 825 (1114)
+.|...|..+.++|.|... | +
T Consensus 398 --~~Hskei~t~~wsp~g~v~---------------------------------~----------------n-------- 418 (524)
T KOG0273|consen 398 --QAHSKEIYTIKWSPTGPVT---------------------------------S----------------N-------- 418 (524)
T ss_pred --hhhccceeeEeecCCCCcc---------------------------------C----------------C--------
Confidence 2367788888888887500 0 0
Q ss_pred EeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccC
Q 001248 826 LSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR 904 (1114)
Q Consensus 826 ~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~ 904 (1114)
...+..+++++ |++|++||+..+.++.+|..|..+|.+++|+| +|+++|+|+.||.|.+|+..++++++...+- +.
T Consensus 419 -~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~ 495 (524)
T KOG0273|consen 419 -PNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GG 495 (524)
T ss_pred -CcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC-Ce
Confidence 01344566666 99999999999999999999999999999999 9999999999999999999999999988864 55
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 905 ITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
|..|+|+.+|.+|..+-.|+.+++.|+.
T Consensus 496 Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 496 IFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999999998874
No 16
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=8.4e-37 Score=331.79 Aligned_cols=586 Identities=15% Similarity=0.159 Sum_probs=428.2
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 001248 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1114)
Q Consensus 364 v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~ 443 (1114)
..|..-|..++++.+.+....+||.+.-..+. +-..+...|+|++-..+--|.|+| ..
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~-------------------vs~~lp~~I~alas~~~~vy~A~g---~~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLF-------------------VSKPLPDKITALASDKDYVYVASG---NK 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEE-------------------ecCCCCCceEEEEecCceEEEecC---cE
Confidence 55666677788999999999999998766654 234677899999865554444433 34
Q ss_pred EEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cce----eEeeccccCEEEEeec
Q 001248 444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQ----YIFEGHEAPVYSVCPH 518 (1114)
Q Consensus 444 i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~----~~~~~h~~~v~~~~~~ 518 (1114)
|.+|. .|+.+.. .+.+|...|.-+.- -|. .++++..++.+.||+...+ ... ..++.....|+++. |
T Consensus 97 i~~~~--rgk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYA--RGKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEE--ccceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 66664 3433333 46677777776653 466 6889999999999998874 221 22233333488875 5
Q ss_pred cCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeE
Q 001248 519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 598 (1114)
Q Consensus 519 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 598 (1114)
|+---+.++.|+.+|.+.+|++++++.+.++......|+++.-+|--. .++.|..+|+|
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD---------------------VVaiG~~~G~V 226 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD---------------------VVAIGLENGTV 226 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce---------------------EEEEeccCceE
Confidence 655556799999999999999999999999888888888776665432 58889999999
Q ss_pred EEEECCCcceEEEeccCCCCCCcCeEEEcCCCCE-EEEEeCCCcEEEEEccCCccceeecc-ccccccccCCCCCCCCcc
Q 001248 599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFE-NLAYDASRTSENSKPTIS 676 (1114)
Q Consensus 599 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 676 (1114)
.++|++.++.+.+++... +.|++++|.-||.. +++|+..|.+.+||++.. +....+. .|...+.
T Consensus 227 iifNlK~dkil~sFk~d~--g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k-kl~~v~~nah~~sv~----------- 292 (910)
T KOG1539|consen 227 IIFNLKFDKILMSFKQDW--GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK-KLINVTRNAHYGSVT----------- 292 (910)
T ss_pred EEEEcccCcEEEEEEccc--cceeEEEeccCCCeeEEeccCCceEEEEEcCCC-eeeeeeeccccCCcc-----------
Confidence 999999999999998763 47999999999975 556666799999999877 3433333 3322211
Q ss_pred chhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEE
Q 001248 677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 756 (1114)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 756 (1114)
...+.+....+++++.|+.+++|-.+.+... .+.+... .+|..+-.+
T Consensus 293 ------------------------------~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~--pR~LR~R-~GHs~Pp~~ 339 (910)
T KOG1539|consen 293 ------------------------------GATFLPGEPVLVTAGADNSLKVWVFDSGDGV--PRLLRSR-GGHSAPPSC 339 (910)
T ss_pred ------------------------------cceecCCCceEeeccCCCceeEEEeeCCCCc--chheeec-cCCCCCchh
Confidence 2234456677889999999999977754432 2222222 479999999
Q ss_pred EEEc-cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC----C
Q 001248 757 LIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND----S 831 (1114)
Q Consensus 757 l~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~----~ 831 (1114)
+.|- .+|..+++++.|++.+.+++....++..-.. ......+..+.........-.+|..+++...- .
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 9997 7899999999999999888765433221111 01111111110000000022345555554321 1
Q ss_pred EEEEEe--CCeEEEEEcCCCcc-cccc-----CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee---cc
Q 001248 832 YVMSAS--GGKISLFNMMTFKT-MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL---KG 900 (1114)
Q Consensus 832 ~l~~~~--dg~i~iwd~~~~~~-~~~~-----~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l---~~ 900 (1114)
-++++. +..++.|+...... ...+ +.....+++++.++ -|++.+.|+..|.|-+|++++|-....+ ..
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 244443 57799999976443 2222 22346799999999 9999999999999999999999888888 58
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEE
Q 001248 901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 979 (1114)
Q Consensus 901 h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd 979 (1114)
|.++|++++...-++.++|++.||.+++||..+..... ... ....+.++..+.....+++ ..|-.|+++|
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~-----~l~----l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK-----SLR----LGSSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcceee-----eec----cCCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 99999999998888999999999999999998854211 111 1136788888888888888 5888999999
Q ss_pred cCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
..+.+.++.+. +|+..|++++|||||++|++++.|++|++||+.++.++..+. .. ..++++.|+| +
T Consensus 563 ~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----vd-------~~~~sls~SP-n 628 (910)
T KOG1539|consen 563 VVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----VD-------SPCTSLSFSP-N 628 (910)
T ss_pred chhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe----cC-------CcceeeEECC-C
Confidence 99999999987 899999999999999999999999999999999999998776 22 2356899999 6
Q ss_pred CCeEEEEeCC-CcEEEEeccC
Q 001248 1060 PNEFALGLSD-GGVHVFEPLE 1079 (1114)
Q Consensus 1060 ~~~l~s~~~D-g~v~vW~i~~ 1079 (1114)
|++|+|+..| ..|++|.=..
T Consensus 629 gD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCEEEEEEecCceEEEEEchh
Confidence 9999999999 7899997443
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-40 Score=333.48 Aligned_cols=285 Identities=18% Similarity=0.268 Sum_probs=258.6
Q ss_pred cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC
Q 001248 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1114)
Q Consensus 463 ~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 542 (1114)
|-+.+|..+.||.|++ .|+|||.+|.+++|+..+...+.+|.||...|.++.|+|..++..+++++.||++++|++++
T Consensus 173 gd~rPis~~~fS~ds~--~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSK--HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCC--eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 4567899999999999 89999999999999999999999999999999999999986567899999999999999999
Q ss_pred CCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcC
Q 001248 543 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 622 (1114)
Q Consensus 543 ~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 622 (1114)
...+..+.+|...|..++|.|+|+ +|++++.|.+-++||+.++..+....+| ...|.
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~---------------------~L~TasfD~tWRlWD~~tk~ElL~QEGH--s~~v~ 307 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGK---------------------FLGTASFDSTWRLWDLETKSELLLQEGH--SKGVF 307 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCc---------------------eeeecccccchhhcccccchhhHhhccc--ccccc
Confidence 888888888888777777766665 8999999999999999999888777766 55899
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccC
Q 001248 623 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP 702 (1114)
Q Consensus 623 ~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1114)
+++|.+||.++++|+.|..-+|||++++ .++..+.
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtg-r~im~L~-------------------------------------------- 342 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTG-RCIMFLA-------------------------------------------- 342 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccC-cEEEEec--------------------------------------------
Confidence 9999999999999999999999999988 2222111
Q ss_pred CCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecc
Q 001248 703 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 782 (1114)
Q Consensus 703 ~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~ 782 (1114)
T Consensus 343 -------------------------------------------------------------------------------- 342 (459)
T KOG0272|consen 343 -------------------------------------------------------------------------------- 342 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCC
Q 001248 783 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA 861 (1114)
Q Consensus 783 ~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~ 861 (1114)
+|..+|.+++|+|+|-.||+|+ |++++|||+.....+.++.+|.+-
T Consensus 343 ---------------------------------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 343 ---------------------------------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred ---------------------------------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 2677788888888888999998 899999999988889999999999
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 862 i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
|+.|.|+|..|.+|++++.|++++||...++++++.+.||.+.|.++..++|+.+++|++.|+++++|.
T Consensus 390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999998899999999999999999999999999999999999999999999999999999999995
No 18
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.7e-40 Score=328.86 Aligned_cols=285 Identities=19% Similarity=0.299 Sum_probs=259.5
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC--
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-- 431 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-- 431 (1114)
.++.+.+|..+.||+|++ +||||+-+|.++||+..+...+. +|.||...|.++.|+|.
T Consensus 171 Q~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~ 230 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDS 230 (459)
T ss_pred hccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCC
Confidence 345788999999999999 59999999999999999987665 58999999999999996
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccC
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1114)
+..+|+|+.||++++|++++...+. .+.+|...|..++|.|+|+ +|+|++.|.+-++||+.++..+....||...
T Consensus 231 ~~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~ 305 (459)
T KOG0272|consen 231 DLNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKG 305 (459)
T ss_pred ccceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccc
Confidence 6789999999999999999977666 7999999999999999999 8999999999999999999999999999999
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
|.+++|++ ||.++++||.|..-++||++++.++..+.+|...|.++.|+|+|- .+++
T Consensus 306 v~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy---------------------~lAT 362 (459)
T KOG0272|consen 306 VFSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY---------------------HLAT 362 (459)
T ss_pred cceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce---------------------EEee
Confidence 99999865 568999999999999999999999999999999999999888886 6999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCC
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 670 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1114)
|+.|++++|||++..+.+.++..| ...|+.+.|+| .|.+|++++.|++++||...+. .+++.+.
T Consensus 363 gs~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLa------------ 427 (459)
T KOG0272|consen 363 GSSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLA------------ 427 (459)
T ss_pred cCCCCcEEEeeecccccceecccc--cchhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhc------------
Confidence 999999999999999999999877 45799999999 7899999999999999988776 4444443
Q ss_pred CCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccc
Q 001248 671 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 750 (1114)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 750 (1114)
+|
T Consensus 428 ------------------------------------------------------------------------------GH 429 (459)
T KOG0272|consen 428 ------------------------------------------------------------------------------GH 429 (459)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 37
Q ss_pred ccceEEEEEccCcceeeecccCceEEEEe
Q 001248 751 ATKISRLIFTNSGNAILALASNAIHLLWK 779 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~dg~i~vw~ 779 (1114)
.++|.++.+++|+..+++++.|.++++|.
T Consensus 430 e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 430 EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccceEEEEeccCCceEEEeccCceeeecc
Confidence 88999999999999999999999999984
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.6e-38 Score=301.74 Aligned_cols=292 Identities=20% Similarity=0.311 Sum_probs=258.4
Q ss_pred eEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 352 TRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 352 ~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
.++|. |...|.++.|++|+++ +++++.||.+.|||.-+..+.+. +.-....|..+||+|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sP 107 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSP 107 (343)
T ss_pred EEEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECC
Confidence 36665 9999999999999996 99999999999999988877663 344566999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCC--c-eeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeec
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGG--D-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~--~-~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 507 (1114)
.|+++|+|+-|+...||++.+. + ..+...++.+|.+-+.|+.|.+|+. |+|++.|.++.+||+++|+.+..|.|
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecC
Confidence 9999999999999999999865 2 2234447899999999999999776 89999999999999999999999999
Q ss_pred cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|.++.|.|+|.
T Consensus 185 H~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~--------------------- 242 (343)
T KOG0286|consen 185 HTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD--------------------- 242 (343)
T ss_pred CcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC---------------------
Confidence 9999999998775 668999999999999999999999999999998888888777775
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1114)
-+++|++|++.++||++..+.+..+........|++++||..|++|++|..|.++.+||.-.+ +..-.+
T Consensus 243 afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L---------- 311 (343)
T KOG0286|consen 243 AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL---------- 311 (343)
T ss_pred eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEe----------
Confidence 699999999999999999999999987777778999999999999999999999999997666 222222
Q ss_pred CCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCc
Q 001248 668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747 (1114)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 747 (1114)
T Consensus 312 -------------------------------------------------------------------------------- 311 (343)
T KOG0286|consen 312 -------------------------------------------------------------------------------- 311 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEe
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWK 779 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~ 779 (1114)
.+|..+|+++..+|||..+++++.|..++||.
T Consensus 312 ~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 23889999999999999999999999999993
No 20
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5e-36 Score=319.25 Aligned_cols=586 Identities=14% Similarity=0.171 Sum_probs=396.1
Q ss_pred eccCCCCceEEEEcCCCC---eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 354 TLNQGSSPMSMDFHPVQQ---TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~---~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
.-+|..+|+|+.|-|+.+ + +++|+.||.|++|.+......... .+.+|.. .+++++.
T Consensus 50 l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~~g~~~--~~~cv~a 109 (764)
T KOG1063|consen 50 LDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIY-----------------TIQGHCK--ECVCVVA 109 (764)
T ss_pred ccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEE-----------------eecCcce--eEEEEEe
Confidence 334999999999999887 5 899999999999999843333211 3556644 4555543
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccc--cCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC--cceeEee
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH--VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--AKQYIFE 506 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h--~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~ 506 (1114)
......+...|+++.+||.+..+ +.....+.-. ..--.|+++.++.+.++++.|+.+..|.++.-..+ +.+..+.
T Consensus 110 ~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~ 188 (764)
T KOG1063|consen 110 RSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELE 188 (764)
T ss_pred eeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEee
Confidence 33333334789999999996554 1111122211 12235777778666557888888888999876544 3456889
Q ss_pred ccccCEEEEeeccCCC-ceEEEEEecCCeEEEEEcCCCCCeeee------cC-CCCeeEEEEEecC----CCeEEeeecc
Q 001248 507 GHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVDY------EA-PGRWCTTMAYSAD----GTRTYQGFRK 574 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~------~~-~~~~v~~~~~s~~----g~~~~~~~~~ 574 (1114)
||.+.|.+++|..... .-+|+++|.|..|++|.+.-....... .. ...++..+...-+ -..++.||.+
T Consensus 189 GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD 268 (764)
T KOG1063|consen 189 GHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED 268 (764)
T ss_pred ccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc
Confidence 9999999999875543 468999999999999987643311100 00 0011111100000 0012234433
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcc--eEEEe--ccC-CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSI--DAD-GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~--~~~-~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
-+..+.|+|.+..|++++.|.++.+|...+.. -+... ... +........-|+|+++.+++-+..|..++|...+
T Consensus 269 -WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d 347 (764)
T KOG1063|consen 269 -WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD 347 (764)
T ss_pred -ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC
Confidence 67788888888889999999999999876542 22222 111 2233567899999999999999999999997322
Q ss_pred CccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEE
Q 001248 650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 729 (1114)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 729 (1114)
.. .|
T Consensus 348 ~~----------------------------------------------------------------------------~w 351 (764)
T KOG1063|consen 348 KT----------------------------------------------------------------------------FW 351 (764)
T ss_pred cc----------------------------------------------------------------------------ce
Confidence 20 11
Q ss_pred EeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccc
Q 001248 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809 (1114)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 809 (1114)
.... -..+|...|+++++.|.|.+|++.+.|.+-|++..-..+. -|.-..
T Consensus 352 ~~~~------------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~-------------~wHEia----- 401 (764)
T KOG1063|consen 352 TQEP------------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ-------------EWHEIA----- 401 (764)
T ss_pred eecc------------ccccccccceeeeecCCCCEEEEeccccceeeeccccccc-------------ceeeec-----
Confidence 1100 0034889999999999999999999999999875321110 011100
Q ss_pred ccCCCCCCCCCccEEEEeeCCCEEEEEeC-CeEEEEEcCC----------------------------------------
Q 001248 810 NDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMT---------------------------------------- 848 (1114)
Q Consensus 810 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~d-g~i~iwd~~~---------------------------------------- 848 (1114)
...-|...++|+++-+....+++|.| .-+|+|+...
T Consensus 402 ---RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e 478 (764)
T KOG1063|consen 402 ---RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGE 478 (764)
T ss_pred ---ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccc
Confidence 01126777788887765555666664 4577776410
Q ss_pred ---Cc---------------------------------cccccCCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEE
Q 001248 849 ---FK---------------------------------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIY 887 (1114)
Q Consensus 849 ---~~---------------------------------~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg-----~v~iw 887 (1114)
|. .++.+-+|..+|.+++.+| +++++|+++... .|++|
T Consensus 479 ~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw 557 (764)
T KOG1063|consen 479 TNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLW 557 (764)
T ss_pred cccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEE
Confidence 00 0112345778899999999 999999998543 69999
Q ss_pred EcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 888 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 888 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
+..+...+..+.+|+-.|+.++|||||++|+++|+|+++.+|+.......... ......|. .-|..+.|+||++++
T Consensus 558 ~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht---RIIWdcsW~pde~~F 633 (764)
T KOG1063|consen 558 NTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHT---RIIWDCSWSPDEKYF 633 (764)
T ss_pred eccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccc---eEEEEcccCccccee
Confidence 99999888999999999999999999999999999999999998664443333 22234444 378999999999999
Q ss_pred EE-EeCCeEEEEEcCCC--ceeeeeecCCCCcCeeEEEECC-----CCCEEEEEEcCCeEEEEEcCCCee-----eEEeC
Q 001248 968 LV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSC-----DSQLVYACFLDATVCVFSAANLKL-----RCRIN 1034 (1114)
Q Consensus 968 ~~-~~d~~i~iwd~~~~--~~~~~~~~~~h~~~v~~l~~s~-----dg~~l~s~s~Dg~I~vwd~~~~~~-----~~~~~ 1034 (1114)
++ +.|++|++|..... +.+..+....++..|+.+++.| .+..+++|-..|.|.+|....... ...+.
T Consensus 634 aTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~ 713 (764)
T KOG1063|consen 634 ATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLD 713 (764)
T ss_pred EEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeec
Confidence 99 69999999999888 6666655567899999999977 223678899999999999651111 01111
Q ss_pred CCcccCCCCCCCCccceEEEecCCC-------CC--eEEEEeCCCcEEEEecc
Q 001248 1035 PSAYLPAGVSSSNVHPLVIAAHPQE-------PN--EFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1035 ~~~~~~~~~~~~~v~~~~~~~~~~d-------~~--~l~s~~~Dg~v~vW~i~ 1078 (1114)
.......+|.+. |. .+.|.|.. .. .|++|++|.+++++++.
T Consensus 714 ~~l~~~~~~~~a-V~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 714 TRLCATIGPDSA-VN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccccccChHHh-hh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 111111122222 55 78888641 22 36999999999999874
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-36 Score=314.97 Aligned_cols=464 Identities=17% Similarity=0.263 Sum_probs=352.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+.+.|.++.|+|...+ +.++-.+|.|.|||.++...+.. +.-..-+|++..|-+..++++
T Consensus 12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 8999999999999997 66677899999999999877754 222345899999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeeccccCEEEE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSV 515 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~ 515 (1114)
+|++|+.|+||+..+++.++ .+..|.+-|.+++..|... +++|+|+|-+|++||.+.+ .+.+++.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998776 7999999999999999999 8999999999999999865 5778999999999999
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
+|.|..+ +.+++++.|++|++|.+....+.+++.+|...|.++.+-+.|. ..++++|++|
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd-------------------kpylIsgaDD 206 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD-------------------KPYLISGADD 206 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------------------cceEEecCCC
Confidence 9998655 7999999999999999999999999999999888888877653 3579999999
Q ss_pred CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCc
Q 001248 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1114)
..|+|||..+..+++++.+|.+ .|..+.|+|.=.++++|++||+++||+..+- +....+.
T Consensus 207 ~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn----------------- 266 (794)
T KOG0276|consen 207 LTIKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN----------------- 266 (794)
T ss_pred ceEEEeecchHHHHHHhhcccc--cceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhh-----------------
Confidence 9999999999999999998754 7999999999999999999999999986554 1111110
Q ss_pred cchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceE
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1114)
-...++.
T Consensus 267 -------------------------------------------------------------------------~gleRvW 273 (794)
T KOG0276|consen 267 -------------------------------------------------------------------------YGLERVW 273 (794)
T ss_pred -------------------------------------------------------------------------cCCceEE
Confidence 0235677
Q ss_pred EEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEE
Q 001248 756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1114)
Q Consensus 756 ~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 835 (1114)
+++-.+.++.++.|.++|.+.+= -......+.+++.|+.+-+
T Consensus 274 ~I~~~k~~~~i~vG~Deg~i~v~--------------------------------------lgreeP~vsMd~~gKIiwa 315 (794)
T KOG0276|consen 274 CIAAHKGDGKIAVGFDEGSVTVK--------------------------------------LGREEPAVSMDSNGKIIWA 315 (794)
T ss_pred EEeecCCCCeEEEeccCCcEEEE--------------------------------------ccCCCCceeecCCccEEEE
Confidence 77777777778888888887651 1122234555566655444
Q ss_pred EeC--CeEEEE------EcCCCccc----cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccccc
Q 001248 836 ASG--GKISLF------NMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1114)
Q Consensus 836 ~~d--g~i~iw------d~~~~~~~----~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1114)
... -.+.+- ++..|+.+ +.+-...-....++-+| +|+++++++ ||.-.||..-..+ ..+.+
T Consensus 316 ~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~fG 388 (794)
T KOG0276|consen 316 VHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKAFG 388 (794)
T ss_pred cCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcccc
Confidence 331 112222 22233322 11111122235678889 898887665 8888888743221 12445
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCC
Q 001248 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 983 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~ 983 (1114)
.-....|++|.+..|+--.++.|+++ .+.+..+. +. .-..+.+--.|.+|.+..++.+++||..++
T Consensus 389 ~~~eFvw~~dsne~avRes~~~vki~--knfke~ks--i~----------~~~~~e~i~gg~Llg~~ss~~~~fydW~~~ 454 (794)
T KOG0276|consen 389 SGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKS--IR----------PDMSAEGIFGGPLLGVRSSDFLCFYDWESG 454 (794)
T ss_pred cceeEEEcCCCCeEEEEecCCceEEE--ecceeccc--cc----------cccceeeecCCceEEEEeCCeEEEEEcccc
Confidence 56778999998888888888999998 33221110 00 011223333566777788999999999999
Q ss_pred ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
+.++.+.. ....+.|+.+|.+++.++.|. .+|+.
T Consensus 455 ~lVrrI~v-----~~k~v~w~d~g~lVai~~d~S-fyil~ 488 (794)
T KOG0276|consen 455 ELVRRIEV-----TSKHVYWSDNGELVAIAGDDS-FYILK 488 (794)
T ss_pred eEEEEEee-----ccceeEEecCCCEEEEEecCc-eeEEE
Confidence 99998863 456789999999998887554 44443
No 22
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=4.9e-35 Score=318.12 Aligned_cols=543 Identities=14% Similarity=0.197 Sum_probs=407.1
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+.+.|+|++-..+-- +++ ....|.+|-- |+.+.. ++.+|...|.-+. +=|.+++
T Consensus 75 lp~~I~alas~~~~v---y~A-~g~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~--~fGe~li 128 (910)
T KOG1539|consen 75 LPDKITALASDKDYV---YVA-SGNKIYAYAR--GKHIRH------------------TTLLHGAKVHLLL--PFGEHLI 128 (910)
T ss_pred CCCceEEEEecCceE---EEe-cCcEEEEEEc--cceEEE------------------EeccccceEEEEe--eecceEE
Confidence 788999998766643 332 2456666653 333321 4667777787776 3489999
Q ss_pred EEeCCCeEEEEEccCC-ceeeeeEeec-cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 437 VAYSRHIVQIYSYHGG-DEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~-~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
++..++.+.||+..++ +......++. .....|+++. .|..---.++.|+.+|.+++|++++++.+++++++...|++
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ 207 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA 207 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence 9999999999999884 2211101222 2222366654 34321114889999999999999999999999999999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
+.-+ |--..++.|..+|+|.+++++..+.+.++....+.|++++|..||.. .+++++.
T Consensus 208 ieqs--PaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p--------------------~las~~~ 265 (910)
T KOG1539|consen 208 IEQS--PALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP--------------------LLASGRS 265 (910)
T ss_pred eccC--CcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe--------------------eEEeccC
Confidence 9844 44469999999999999999999999999888889999999999873 5788888
Q ss_pred CCeEEEEECCCcceEEEec-cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc---cceeeccccccccccCCCC
Q 001248 595 DFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI---RLLRTFENLAYDASRTSEN 670 (1114)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~ 670 (1114)
.|.+-+||++..+.+..+. .| ...+....|.|....+++++.|+.+++|-..++. +.++.-.||..+..
T Consensus 266 ~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~----- 338 (910)
T KOG1539|consen 266 NGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS----- 338 (910)
T ss_pred CceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch-----
Confidence 8999999999888776665 34 4468899999999999999999999998666442 34444456655433
Q ss_pred CCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccc--------
Q 001248 671 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS-------- 742 (1114)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-------- 742 (1114)
++..++ ..+..+++++.|++.+.+.+...........
T Consensus 339 ---~irfy~--------------------------------~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k 383 (910)
T KOG1539|consen 339 ---CIRFYG--------------------------------SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK 383 (910)
T ss_pred ---heeeec--------------------------------cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence 222221 3466788888899888887654322222111
Q ss_pred -cc--cCccccccceEEEEEccC-----cceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccc--cccC
Q 001248 743 -LR--LPENLRATKISRLIFTNS-----GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM--TNDV 812 (1114)
Q Consensus 743 -~~--~~~~~~~~~i~~l~~s~~-----~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~--~~~~ 812 (1114)
.. ......-.+|..+++... .+.+.+.-.+...+.|+++.... |+.. ...+
T Consensus 384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~-------------------G~~~L~~~~~ 444 (910)
T KOG1539|consen 384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS-------------------GRHVLDPKRF 444 (910)
T ss_pred cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc-------------------ccEEecCccc
Confidence 00 011123345666666543 23344444457888888764321 1111 0001
Q ss_pred CCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccccc---CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 813 ~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
. .....+++++.++.|++.+.|. .|.|-+|++++|-....+ ..|..+|+.++... -++.+++++.+|-+.+||
T Consensus 445 ~--~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 445 K--KDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWD 521 (910)
T ss_pred c--ccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEe
Confidence 1 1456789999999999999998 899999999999988888 58999999999987 788999999999999999
Q ss_pred cccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEE
Q 001248 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1114)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~ 968 (1114)
..+..++..++- ...++++..+.....+|.+..|-.|+++|+.+. ...+.+.||.. .|+.++|||||++|+
T Consensus 522 f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~-----kvvR~f~gh~n---ritd~~FS~DgrWli 592 (910)
T KOG1539|consen 522 FKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR-----KVVREFWGHGN---RITDMTFSPDGRWLI 592 (910)
T ss_pred cCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhh-----hhhHHhhcccc---ceeeeEeCCCCcEEE
Confidence 999887777763 456888999988899999999999999999983 45667777774 899999999999999
Q ss_pred E-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-CeEEEEEc
Q 001248 969 V-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSA 1024 (1114)
Q Consensus 969 ~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-g~I~vwd~ 1024 (1114)
+ +.|++|++||+.++.++..+.. ..+.+++.|||+|.+||++..| .-|++|.=
T Consensus 593 sasmD~tIr~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EeecCCcEEEEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 9 6899999999999999988865 6789999999999999999998 56999963
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-36 Score=287.32 Aligned_cols=258 Identities=21% Similarity=0.319 Sum_probs=220.9
Q ss_pred eEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 352 TRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 352 ~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
..++. |++.|+.++..+.+..++++++.|.++.+|++.......- .....+.||+..|..++.++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~s~ 73 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVLSS 73 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEEcc
Confidence 34555 9999999999999888999999999999999876532211 11125889999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc--
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-- 508 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-- 508 (1114)
||.+.++++.|+++++||+.+|+..+ .|.||...|.+++|++|++ .++||+.|++|++||+. |.+..++..+
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~~ 147 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDSH 147 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCCC
Confidence 99999999999999999999997665 6889999999999999999 59999999999999966 5556666544
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
.+.|.+++|+|..+..+|++++.|+++++||+++.+....+.+|.+.+..+++||||. .
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs---------------------l 206 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS---------------------L 206 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC---------------------E
Confidence 7999999999998778999999999999999999888888888888888888888876 6
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcccee
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1114)
.++|+.||.+.+||++.++.++.+.. ...|.+++|+|+...|+.+.. ..|+|||+.++ ..+.
T Consensus 207 casGgkdg~~~LwdL~~~k~lysl~a---~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~ 268 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGKNLYSLEA---FDIVNSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVE 268 (315)
T ss_pred EecCCCCceEEEEEccCCceeEeccC---CCeEeeEEecCCceeEeeccC-CceEEEeccch-hhhh
Confidence 88899999999999999999888864 356999999999877776655 56999999887 4443
No 24
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.5e-35 Score=310.83 Aligned_cols=549 Identities=17% Similarity=0.222 Sum_probs=386.5
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC---eEEEE
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVA 438 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~ 438 (1114)
....|.|.+. +|.| ....|.+||........ .+.||..+|+|+.|-|+.+ ++++|
T Consensus 18 ~v~sw~~~~~--vafG-a~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG 75 (764)
T KOG1063|consen 18 KVSSWGPGGL--VAFG-AGPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSG 75 (764)
T ss_pred ccccccccce--EEec-CCceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEc
Confidence 3445566653 5555 46789999987653222 5899999999999999888 89999
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc--ceeEeeccccCEEEEe
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVC 516 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~ 516 (1114)
+.|+.|++|.++. +.+....++.+|...+.|+. .... .......|+++.+||.+..+ +...+.-..+.+..+|
T Consensus 76 ~sD~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLc 150 (764)
T KOG1063|consen 76 DSDGRVILWKLRD-EYLIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLC 150 (764)
T ss_pred cCCCcEEEEEEee-hheEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHH
Confidence 9999999999994 34556667888776655554 2222 22223789999999985555 2233332223333333
Q ss_pred --eccCCCceEEEEEecCCeEEEEEcCCC--CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 517 --PHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 517 --~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
+.+.++.-+++.|+.+..|.++.-... .....+.+|.+.|.+++|...+. +.-+|+++
T Consensus 151 L~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~------------------~~~~laS~ 212 (764)
T KOG1063|consen 151 LAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG------------------DDLLLASS 212 (764)
T ss_pred HhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC------------------CcEEEEec
Confidence 334333335666677777888755432 33457889999999999887654 22368889
Q ss_pred eCCCeEEEEECCCcc---------------------eEEEec--------cCCCCCCcCeEEEcCCCCEEEEEeCCCcEE
Q 001248 593 GDDFSIKFWDMDSVQ---------------------LLTSID--------ADGGLPASPRIRFNKDGCLLAVSTNDNGIK 643 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~---------------------~~~~~~--------~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 643 (1114)
+.|..||||.+.-+. ....+. ..+|.+.|.++.|+|.+..|++++.|.++.
T Consensus 213 SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmi 292 (764)
T KOG1063|consen 213 SQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMI 292 (764)
T ss_pred CCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceE
Confidence 999999999864322 010111 125567899999999998889999999999
Q ss_pred EEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCC
Q 001248 644 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 723 (1114)
Q Consensus 644 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 723 (1114)
+|...+..-....
T Consensus 293 iW~pd~~tGiWv~------------------------------------------------------------------- 305 (764)
T KOG1063|consen 293 IWKPDENTGIWVD------------------------------------------------------------------- 305 (764)
T ss_pred EEecCCccceEEE-------------------------------------------------------------------
Confidence 9975443111000
Q ss_pred CceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCC
Q 001248 724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 803 (1114)
Q Consensus 724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~ 803 (1114)
.+++=.+ .+....-.+..|+|+++.+++-+..|..++|.... ...|...
T Consensus 306 -~vRlGe~----------------gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~ 354 (764)
T KOG1063|consen 306 -VVRLGEV----------------GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQE 354 (764)
T ss_pred -EEEeecc----------------cccccceeeEEEcCCCCEEEEecccCcEEEEeccC--------------ccceeec
Confidence 0000000 01344567888999999999999999999997221 1123221
Q ss_pred CCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC----CccccccCCCCCCeEEEEEecCCCcEEEEE
Q 001248 804 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIG 878 (1114)
Q Consensus 804 ~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~la~g 878 (1114)
....+|...|+.++|+|.|++|.+.+ |-+-|+|-.-. ...+..-+.|...++|++|-+ ....+++|
T Consensus 355 --------~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSg 425 (764)
T KOG1063|consen 355 --------PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSG 425 (764)
T ss_pred --------cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeec
Confidence 11135999999999999999999999 99999987652 123344466888899999998 57788889
Q ss_pred eCCCcEEEEEcc-------------------------------------------cce----------------------
Q 001248 879 MDDSSIQIYNVR-------------------------------------------VDE---------------------- 893 (1114)
Q Consensus 879 ~~dg~v~iwd~~-------------------------------------------~~~---------------------- 893 (1114)
.+...+|+|+.. +|.
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 999999999751 010
Q ss_pred -----------EEEeecccccCeeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCccccccccccCCCCCCCCCCceE
Q 001248 894 -----------VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957 (1114)
Q Consensus 894 -----------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 957 (1114)
.+.++.||.-.|++++.+|+|+++||++... .|++|+..+... .+.+.+|.. .|+.
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~HsL---TVT~ 577 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHSL---TVTR 577 (764)
T ss_pred HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccce---EEEE
Confidence 1123458999999999999999999998764 489999998543 445667764 8999
Q ss_pred EEEccCCcEEEE-EeCCeEEEEEcCCCcee--eeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCC--eeeEE
Q 001248 958 VQFHQDQIHFLV-VHETQLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--KLRCR 1032 (1114)
Q Consensus 958 v~fspdg~~l~~-~~d~~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~--~~~~~ 1032 (1114)
++|||||++|++ +.|+++.+|........ +--....|..-|.+..|+||+.+++|+|.|++|+||..... +.+.+
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh
Confidence 999999999998 89999999998544221 11114689999999999999999999999999999999888 44444
Q ss_pred eCCCcccCCCCCCCCccceEEEecCCCCC----eEEEEeCCCcEEEEecc
Q 001248 1033 INPSAYLPAGVSSSNVHPLVIAAHPQEPN----EFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1033 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~----~l~s~~~Dg~v~vW~i~ 1078 (1114)
+. .++. +..|. +++|.|.+.+ .+++|-+.|.|.+|+..
T Consensus 658 ~a---~~~~---~~aVT--Av~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 658 FA---CLKF---SLAVT--AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hc---hhcc---CCcee--eEEeeccccccccceEEEEecccEEEEEecc
Confidence 32 1222 22245 6666664443 78999999999999976
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-36 Score=285.08 Aligned_cols=297 Identities=15% Similarity=0.219 Sum_probs=250.5
Q ss_pred cccccceEEEEEccC-cceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEE
Q 001248 748 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 826 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~ 826 (1114)
.+|.+.|+.++..+. ...+++++.|..+.+|++... |...|..... +++ |...|..++.
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~ 71 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL 71 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence 459999999999887 556788899999999998743 2334444433 444 9999999999
Q ss_pred eeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc-cccC
Q 001248 827 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKR 904 (1114)
Q Consensus 827 s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~-h~~~ 904 (1114)
++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|+...........+ |++-
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW 150 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence 99999999999 99999999999999999999999999999999 899999999999999999876543333332 3788
Q ss_pred eeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcC
Q 001248 905 ITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT 981 (1114)
Q Consensus 905 V~~l~~s~d--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~ 981 (1114)
|+++.|+|. ..+|+++|.|++|++||+++.+ ....+.+|. +.++.+++||||..+++ +.||.+.+||++
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL~ 222 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDLN 222 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEcc
Confidence 999999998 7899999999999999999843 455556665 48999999999999999 689999999999
Q ss_pred CCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC
Q 001248 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1061 (1114)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1061 (1114)
.++++..+ +|...|.+++|+|+.-+|+.+. +..|+|||++++..+..+.+..-.+ ......+.+++++|++ ||.
T Consensus 223 ~~k~lysl---~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG~ 296 (315)
T KOG0279|consen 223 EGKNLYSL---EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DGQ 296 (315)
T ss_pred CCceeEec---cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CCc
Confidence 99997776 6789999999999987777664 6679999999999998887554444 2234457889999999 799
Q ss_pred eEEEEeCCCcEEEEeccC
Q 001248 1062 EFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1062 ~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.|+.|..|+.|++|.+..
T Consensus 297 tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEEeeecCCcEEEEEeec
Confidence 999999999999999853
No 26
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=296.03 Aligned_cols=508 Identities=19% Similarity=0.261 Sum_probs=368.5
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCC--------cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--------DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 422 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg--------~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 422 (1114)
....++|++.|.|++.+||.-+ +++|...| .|+|||..+-..+. ++..-...
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~-vatGQ~ag~~g~~~~phvriWdsv~L~TL~-------------------V~g~f~~G 156 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIR-VATGQGAGTSGRPLQPHVRIWDSVTLSTLH-------------------VIGFFDRG 156 (626)
T ss_pred cccccCCCCceEEEeecCCcee-eccCcccccCCCcCCCeeeecccccceeee-------------------eecccccc
Confidence 3467789999999999999884 88887766 39999977766555 34455668
Q ss_pred eeEEEEcC--CCCeEEEE--eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC
Q 001248 423 VNRVIWSP--DGSLFGVA--YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1114)
Q Consensus 423 V~~l~~sp--dg~~las~--~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 498 (1114)
|.|++||+ .|.+|+.. +.+..+.+||+..+.... .....++.|....|.|.+.. ++++++ .+.+..|+++.
T Consensus 157 V~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~---~vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~~ 231 (626)
T KOG2106|consen 157 VTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG---PVKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLRG 231 (626)
T ss_pred ceeeeecccCCCceEEEecCCCccccchhhchhhhccC---cceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEccC
Confidence 99999998 45566654 445679999999877665 34445678999999999987 567766 57999999998
Q ss_pred CcceeE---eecc-ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 499 GAKQYI---FEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 499 ~~~~~~---~~~h-~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
+...++ +..+ ...|.+++|.+.. -+++|..+|.|.+|+..+.........|.+.|.+++...+|.
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F~eng---dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-------- 300 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTFLENG---DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-------- 300 (626)
T ss_pred CceEEEeeccccccceEEEEEEEcCCC---CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc--------
Confidence 876553 3333 3668899976554 489999999999999977655555558888999999988887
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
|++|+.|..|..|| ..-+.++..+.+...+.++.++=...+ |++|...+.|..=.+.++....
T Consensus 301 --------------llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 301 --------------LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred --------------EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEE
Confidence 88899999999999 444555566656656677766654433 6667665555443333331110
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
.
T Consensus 364 v------------------------------------------------------------------------------- 364 (626)
T KOG2106|consen 364 V------------------------------------------------------------------------------- 364 (626)
T ss_pred E-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
.+|......++..|+...+++++.|+.+++|+-.. -+|...
T Consensus 365 -------------~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~wt~~----------- 405 (626)
T KOG2106|consen 365 -------------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LEWTKI----------- 405 (626)
T ss_pred -------------EecccceeeEEcCCChhheeeccCcceEEEccCCc---------------eeEEEE-----------
Confidence 23667788899999999999999999999997110 122211
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD- 892 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~- 892 (1114)
...++.|+.|+|.| .+|.|. .|...+.|.++...+..-. ...++++++|+| +|.+||+|+.|+.|+||.+..+
T Consensus 406 --~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 406 --IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred --ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCC
Confidence 45678899999999 888988 8999999999855554444 378899999999 9999999999999999998753
Q ss_pred eEEEee-cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe
Q 001248 893 EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH 971 (1114)
Q Consensus 893 ~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~ 971 (1114)
...... +.|..+|+.+.||+|+++|.+-+.|-.|..|.-.. ..... ++..+.|....
T Consensus 481 ~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~--~~~~t-------------s~kDvkW~t~~------- 538 (626)
T KOG2106|consen 481 RKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE--CKQIT-------------SVKDVKWATYT------- 538 (626)
T ss_pred cEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc--Ccccc-------------eecceeeeeeE-------
Confidence 222222 22448999999999999999999999999993322 11110 12333332211
Q ss_pred CCeEEEEEcCCCceeeee--ecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCcc
Q 001248 972 ETQLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1049 (1114)
Q Consensus 972 d~~i~iwd~~~~~~~~~~--~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1049 (1114)
|.--| ....|+..|..++-+.+.++||+|...|.|++|...--+....+. .+. +|.+. +.
T Consensus 539 -------------c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~h--e~~--ghs~~-vt 600 (626)
T KOG2106|consen 539 -------------CTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSH--EYG--GHSSH-VT 600 (626)
T ss_pred -------------EEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccce--eec--cccce-eE
Confidence 11111 113557778888999999999999999999999987655543322 222 33333 44
Q ss_pred ceEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1050 PLVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1050 ~~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
+++|.-.| ..+++.+.|.+|..|++
T Consensus 601 --~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 601 --NVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred --EEEEeeCC-ceEEecCCCceEEEEEe
Confidence 89999865 55555559999999997
No 27
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.5e-35 Score=291.17 Aligned_cols=339 Identities=17% Similarity=0.249 Sum_probs=285.1
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.|..|++.|.+++.+|+.+++|+|+.|....||++.+|.... .+.+|...|+++.||.||. +||||+.+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 478999999999999999999999999999999999998554 7899999999999999999 89999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
...++.....+......+.=+.|+|.. .+|+.|+.||.+.+|.+.+......+.+|..++++-.|.|+|+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK-------- 203 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK-------- 203 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc--------
Confidence 999999998887777888889998854 7999999999999999998877778888888888777777776
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
+++++..||+|++||..+++++..+....+ ....++.++..+..++.|+.++.+.+.+..++ +.+
T Consensus 204 -------------r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv 268 (399)
T KOG0296|consen 204 -------------RILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVV 268 (399)
T ss_pred -------------eEEEEecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEE
Confidence 699999999999999999999999875543 35789999999999999999999988877666 222
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
....+
T Consensus 269 ~~~n~--------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 269 NCNNG--------------------------------------------------------------------------- 273 (399)
T ss_pred EecCC---------------------------------------------------------------------------
Confidence 21110
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
++..+....
T Consensus 274 ---------------------------~~~~l~~~~-------------------------------------------- 282 (399)
T KOG0296|consen 274 ---------------------------TVPELKPSQ-------------------------------------------- 282 (399)
T ss_pred ---------------------------CCccccccc--------------------------------------------
Confidence 000000000
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 893 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~ 893 (1114)
......|.++.++..-.+.|+|+ ||+|.|||+...+....+. |...|+.+.|-+ ..+|++++.||.|+.||.++|+
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence 00223345556666777889999 9999999998866655554 888899999986 5688899999999999999999
Q ss_pred EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 894 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 894 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
++..+.||...|.+++++|+.++++|+|.|++.+||++.
T Consensus 360 l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999999999999999999999874
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-35 Score=282.96 Aligned_cols=285 Identities=16% Similarity=0.287 Sum_probs=238.7
Q ss_pred EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEE
Q 001248 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1114)
Q Consensus 459 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 538 (1114)
.+|+||.+.|.++.|++|++ .+++++.||.+.|||.-+....+.+.-...+|..++|+|+. +++++|+.|+...||
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr--~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg--~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSR--RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG--NFVACGGLDNKCSIY 124 (343)
T ss_pred EEecccccceeeeEecCCcC--eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC--CeEEecCcCceeEEE
Confidence 47899999999999999999 79999999999999999998888888888999999986654 799999999999999
Q ss_pred EcCCCC------CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEe
Q 001248 539 LYDNLG------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 612 (1114)
Q Consensus 539 d~~~~~------~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 612 (1114)
++.+.. ....+.+|...+.+..|..|+. +++++.|.+..+||+++++.+..+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~----------------------ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH----------------------ILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCCc----------------------eEecCCCceEEEEEcccceEEEEe
Confidence 998652 2235667777777777777664 999999999999999999999999
Q ss_pred ccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccc
Q 001248 613 DADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 691 (1114)
Q Consensus 613 ~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1114)
.+| ...|.+++++| +++.+++|+-|+..++||++.+ ...+.|.+
T Consensus 183 ~GH--~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~g-------------------------------- 227 (343)
T KOG0286|consen 183 HGH--TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEG-------------------------------- 227 (343)
T ss_pred cCC--cccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecc--------------------------------
Confidence 876 45799999999 9999999999999999999888 44444422
Q ss_pred ccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeeccc
Q 001248 692 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS 771 (1114)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 771 (1114)
T Consensus 228 -------------------------------------------------------------------------------- 227 (343)
T KOG0286|consen 228 -------------------------------------------------------------------------------- 227 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCc
Q 001248 772 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK 850 (1114)
Q Consensus 772 dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~ 850 (1114)
|+..|.+++|.|+|.-+++|+ |++.++||+...+
T Consensus 228 ---------------------------------------------hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~ 262 (343)
T KOG0286|consen 228 ---------------------------------------------HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ 262 (343)
T ss_pred ---------------------------------------------cccccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence 444455555555555555555 4555666655555
Q ss_pred cccccC--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEE
Q 001248 851 TMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV 928 (1114)
Q Consensus 851 ~~~~~~--~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~i 928 (1114)
.+..+. .....|++++||. .|++|.+|..|.++.+||.-+++.+..|.||.++|+++..+|||.-|++||.|.+++|
T Consensus 263 ~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 263 ELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI 341 (343)
T ss_pred EEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence 544443 2345799999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 001248 929 WS 930 (1114)
Q Consensus 929 wd 930 (1114)
|.
T Consensus 342 W~ 343 (343)
T KOG0286|consen 342 WA 343 (343)
T ss_pred cC
Confidence 94
No 29
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-34 Score=309.28 Aligned_cols=490 Identities=17% Similarity=0.268 Sum_probs=347.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
....|..++|+|...+ +.++-..|.|.+||+.-+..+. .+..|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~-------------------rFdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLID-------------------RFDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHh-------------------hhhccCCccceeeecCCCCeEE
Confidence 4577899999999997 7788899999999999888776 3789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEe
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1114)
+|++|..|+||+.++.+++. ++.||-+-|..+.|.+.-. .++|+|+|.+|+||++++++++..++||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987665 8999999999999999888 799999999999999999999999999999999999
Q ss_pred eccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC-CCeeEE------EEEecCC--CeEEeeecccceeEEEecCCCC
Q 001248 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTT------MAYSADG--TRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 517 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~------~~~s~~g--~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
|+|+. .+++|+|.|.+|++||+........-.+. ...... +--.+|- +.++.| ++..++.++|+|.-.
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG-HDRGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG-HDRGVNWAAFHPTLP 219 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc-cccccceEEecCCcc
Confidence 99877 48999999999999999754433221110 000000 1001111 133344 455889999999999
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1114)
.+++|++|..|++|.+..-+.-..-...+|...|.++-|+|...++++.++|++|++||+... ..++.++.
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr-------- 290 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR-------- 290 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec--------
Confidence 999999999999999876654433344456778999999999999999999999999998655 33332211
Q ss_pred CCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCc
Q 001248 668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747 (1114)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 747 (1114)
T Consensus 291 -------------------------------------------------------------------------------- 290 (1202)
T KOG0292|consen 291 -------------------------------------------------------------------------------- 290 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
..++...++..|..+.++++ .|+-+.||.+.. ..+ +.++
T Consensus 291 --endRFW~laahP~lNLfAAg-HDsGm~VFkleR-----------------------------------Erp--a~~v- 329 (1202)
T KOG0292|consen 291 --ENDRFWILAAHPELNLFAAG-HDSGMIVFKLER-----------------------------------ERP--AYAV- 329 (1202)
T ss_pred --cCCeEEEEEecCCcceeeee-cCCceEEEEEcc-----------------------------------cCc--eEEE-
Confidence 34566788889999855555 454555666531 122 2333
Q ss_pred eCCCEEEEEeCCeEEEEEcCCCccc--cccCCC---CCCeEEEEEecCCCcEEEEEe-CCCcEEEEEcccceEE----Ee
Q 001248 828 KNDSYVMSASGGKISLFNMMTFKTM--ATFMPP---PPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVK----SK 897 (1114)
Q Consensus 828 ~d~~~l~~~~dg~i~iwd~~~~~~~--~~~~~~---~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~~~~~~----~~ 897 (1114)
++..|...-|..|+.+|+.+.+-. ..++.. ..+..++.++|..+..|++.. ++|...++.+.+.... ..
T Consensus 330 -~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~ 408 (1202)
T KOG0292|consen 330 -NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKD 408 (1202)
T ss_pred -cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchh
Confidence 344455555899999999874432 233322 367899999995555555443 3445555555432110 00
Q ss_pred ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEE
Q 001248 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 977 (1114)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~i 977 (1114)
.. ......++-.. -+++.+---.+.++.+=++.+.... .+... -....+-+...|.+|+. ....|.+
T Consensus 409 ~~-k~tG~~a~fva-rNrfavl~k~~~~v~ik~l~N~vtk---kl~~~-------~~~~~IF~ag~g~lll~-~~~~v~l 475 (1202)
T KOG0292|consen 409 VK-KGTGEGALFVA-RNRFAVLDKSNEQVVIKNLKNKVTK---KLLLP-------ESTDDIFYAGTGNLLLR-SPDSVTL 475 (1202)
T ss_pred hh-cCCCCceEEEE-ecceEEEEecCcceEEecccchhhh---cccCc-------ccccceeeccCccEEEE-cCCeEEE
Confidence 00 11122333332 2233333333666777777652211 11111 13355666667766654 4567999
Q ss_pred EEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 978 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 978 wd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
||++..+.+.++. -..|.-+.||+|..+++.-+ -.+|.|.+
T Consensus 476 fdvQq~~~~~si~----~s~vkyvvws~dm~~vAll~-Kh~i~i~~ 516 (1202)
T KOG0292|consen 476 FDVQQKKKVGSIK----VSKVKYVVWSNDMSRVALLS-KHTITIAD 516 (1202)
T ss_pred EEeecceEEEEEe----cCceeEEEEcCccchhhhcc-cceEEEEe
Confidence 9999999988887 56899999999998877655 45666665
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.3e-36 Score=325.10 Aligned_cols=275 Identities=18% Similarity=0.263 Sum_probs=235.2
Q ss_pred CCCCcceeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeE--------Eeeeee----eccCCCCccc
Q 001248 345 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV--------LRNFKV----WDLGACSMPL 411 (1114)
Q Consensus 345 ~~~~~~~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~--------~~~~~~----~d~~~~~~~~ 411 (1114)
..+|.-+..++. ....++|..||+|++ +||.|-.|..|++|.+...+... ...... -|+.......
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG 442 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence 344565666655 567899999999999 79999999999999998543111 000000 1112222233
Q ss_pred ccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 412 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 412 ~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
....+.||+++|..+.|+||.++|++++.|++|++|.+.+..++- ...||..+|+++.|+|.|- +|||+|.|++.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tA 517 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTA 517 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCcee
Confidence 344589999999999999999999999999999999999987665 6889999999999999998 89999999999
Q ss_pred EEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee
Q 001248 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
++|......+++.+.+|-+.|.|+.|+|+. .++++||.|.++++||+.++..+..+.+|..+|.+++|||+|+
T Consensus 518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr----- 590 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR----- 590 (707)
T ss_pred eeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc-----
Confidence 999999999999999999999999988755 7999999999999999999999988888888888888888776
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+|++|++||.|.+||+.+++.+..+.+| .+.|.++.|+.||..|++|+.|++|++||+...
T Consensus 591 ----------------~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 591 ----------------YLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ----------------eEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 7999999999999999999999999887 568999999999999999999999999998654
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=304.40 Aligned_cols=349 Identities=19% Similarity=0.295 Sum_probs=281.9
Q ss_pred cccCCCCCCCCCcccCCCCChhhhhcccCCCCCcccc-----ccCcccc-cccccCCCCcCCCCcCCCCCCCCCcceeEe
Q 001248 281 ALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEI-----NLPVNVL-PVSFTGHSHSHSHSQAFSTPEDLPKTVTRT 354 (1114)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1114)
.+++.+++.+++.+||.++-..+...|....+....+ .+.+++| +..|..+ ....++.+..++
T Consensus 22 ~g~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~pp~~~~~d-----------p~~~~~tKf~h~ 90 (464)
T KOG0284|consen 22 DGKRLRKPVARRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSSYIIDLVPPSLYLDD-----------PSSAFTTKFVHT 90 (464)
T ss_pred cCccccchhhhcccCCCcHHHHHHHHHhhcccccccccCCCchhhhcccChhhccCC-----------cccccccceEec
Confidence 3477788888999999999998888776544422211 5556666 3333311 112233444444
Q ss_pred c--cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 355 L--NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 355 ~--~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
- .-+..|..|.|+|+|++ |++|+..|.+.+|+..+ ++|+ .++..|..+|+++.||++|
T Consensus 91 s~NKvkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnFE-------------tilQaHDs~Vr~m~ws~~g 150 (464)
T KOG0284|consen 91 SSNKVKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNFE-------------TILQAHDSPVRTMKWSHNG 150 (464)
T ss_pred cccccccceeeEEEcCCCce-eEeecccccEEEecCce------eeHH-------------HHhhhhcccceeEEEccCC
Confidence 3 25679999999999998 89999999999999632 2222 2578999999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccc-cCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccC
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1114)
.++++|+.+|.|++|+..-.... .+.+| ...|++++|||++. .|+|++.||+|+|||....+....+.||.-.
T Consensus 151 ~wmiSgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwd 224 (464)
T KOG0284|consen 151 TWMISGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWD 224 (464)
T ss_pred CEEEEcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCC
Confidence 99999999999999998754322 34454 48999999999888 7999999999999999999999999999999
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
|.++.|+|.. .+++++|.|..|++||.+++.++.++..|...|..+.|.+++. +|++
T Consensus 225 VksvdWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N---------------------~Llt 281 (464)
T KOG0284|consen 225 VKSVDWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN---------------------WLLT 281 (464)
T ss_pred cceeccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC---------------------eeEE
Confidence 9999999887 5999999999999999999999999998988888777777664 8999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCC
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN 670 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1114)
++.|..++++|+++.+.+.++.+| ...++++.|+| ...+|.+|+.||.|..|.+... +.+.
T Consensus 282 ~skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~--------------- 343 (464)
T KOG0284|consen 282 GSKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLG--------------- 343 (464)
T ss_pred ccCCceEEEEehhHhHHHHHhhcc--hhhheeeccccccccceeeccCCCceEEEecccc-cccc---------------
Confidence 999999999999988888888876 45799999999 7788999999999999987522 1110
Q ss_pred CCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccc
Q 001248 671 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 750 (1114)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 750 (1114)
....+|
T Consensus 344 --------------------------------------------------------------------------~i~~AH 349 (464)
T KOG0284|consen 344 --------------------------------------------------------------------------EIPPAH 349 (464)
T ss_pred --------------------------------------------------------------------------CCCccc
Confidence 011348
Q ss_pred ccceEEEEEccCcceeeecccCceEEEEeec
Q 001248 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQ 781 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~ 781 (1114)
...|.+++++|-|..|++++.|.+++.|.-.
T Consensus 350 d~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 350 DGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccceeeeeccccceeEeecCCCcceeeeccC
Confidence 8999999999999999999999999999754
No 32
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-33 Score=297.41 Aligned_cols=468 Identities=18% Similarity=0.220 Sum_probs=347.1
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
+..|+..|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-..-+ .+++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 55688999999999999999999999999999999988776 5666778999999998877 799999999999999
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
..+++.++.|..|.+.|.+++.+|.. .++++++.|-+|++||++.. .+.+++.+|.+.|.+++|.|...
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~-------- 153 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP-------- 153 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------
Confidence 99999999999999999999998876 79999999999999999976 45668899999999999888765
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC--CCCEEEEEeCCCcEEEEEccCCcc
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR 652 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~dg~i~iwd~~~~~~ 652 (1114)
+.+++++-|++|++|.+.+..+..++.+| ...|+|+.+-+ |..+|++|+.|.++++||..+. .
T Consensus 154 ------------ntFaS~sLDrTVKVWslgs~~~nfTl~gH--ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~ 218 (794)
T KOG0276|consen 154 ------------NTFASASLDRTVKVWSLGSPHPNFTLEGH--EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S 218 (794)
T ss_pred ------------cceeeeeccccEEEEEcCCCCCceeeecc--ccCcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence 57999999999999999999999999866 55899999988 4469999999999999999887 6
Q ss_pred ceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEec
Q 001248 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1114)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1114)
++++++|
T Consensus 219 CV~TLeG------------------------------------------------------------------------- 225 (794)
T KOG0276|consen 219 CVQTLEG------------------------------------------------------------------------- 225 (794)
T ss_pred HHHHhhc-------------------------------------------------------------------------
Confidence 6766654
Q ss_pred cCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccC
Q 001248 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1114)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 812 (1114)
|...|..+.|.|.-..++++++||+++||.-.+- ++....-
T Consensus 226 -----------------Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty----------------------~lE~tLn 266 (794)
T KOG0276|consen 226 -----------------HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY----------------------KLEKTLN 266 (794)
T ss_pred -----------------ccccceEEEecCCCcEEEEecCCccEEEecCcce----------------------ehhhhhh
Confidence 5667888999999999999999999999974321 1111000
Q ss_pred CCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC-CcEEEE----
Q 001248 813 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-SSIQIY---- 887 (1114)
Q Consensus 813 ~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d-g~v~iw---- 887 (1114)
..-.++.|++..+.+..+++|.|....+..+....+...+ ++ .|+++-+.... ..+.+-
T Consensus 267 ---~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsM------------d~-~gKIiwa~~~ei~~~~~ks~~~ 330 (794)
T KOG0276|consen 267 ---YGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSM------------DS-NGKIIWAVHSEIQAVNLKSVGA 330 (794)
T ss_pred ---cCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceee------------cC-CccEEEEcCceeeeeeceeccC
Confidence 1356789999989999999999766555565544433333 23 33333222110 011111
Q ss_pred --EcccceEEE----eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEc
Q 001248 888 --NVRVDEVKS----KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 961 (1114)
Q Consensus 888 --d~~~~~~~~----~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fs 961 (1114)
++..|+.+. .+-.-.-.-..++-||+|+++++|+ ||.-.||..-.. +.. . .+.-....|+
T Consensus 331 ~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~-----RnK--~------fG~~~eFvw~ 396 (794)
T KOG0276|consen 331 QKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALAL-----RNK--A------FGSGLEFVWA 396 (794)
T ss_pred cccccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeeh-----hhc--c------cccceeEEEc
Confidence 333343221 1111111123578899998777665 888888864321 111 1 1345778999
Q ss_pred cCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccC
Q 001248 962 QDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1040 (1114)
Q Consensus 962 pdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~ 1040 (1114)
+|....++ -+++.|+++ ++.+..+++....+... --.|.+|. ...++.+++||.++++++.++.
T Consensus 397 ~dsne~avRes~~~vki~--knfke~ksi~~~~~~e~------i~gg~Llg-~~ss~~~~fydW~~~~lVrrI~------ 461 (794)
T KOG0276|consen 397 ADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMSAEG------IFGGPLLG-VRSSDFLCFYDWESGELVRRIE------ 461 (794)
T ss_pred CCCCeEEEEecCCceEEE--ecceeccccccccceee------ecCCceEE-EEeCCeEEEEEcccceEEEEEe------
Confidence 99777777 678999998 67777777664332111 12344444 5557889999999999999998
Q ss_pred CCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1041 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1041 ~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
+.+-.+.|+- +|.+++.++ |...++..+..
T Consensus 462 -------v~~k~v~w~d-~g~lVai~~-d~Sfyil~~n~ 491 (794)
T KOG0276|consen 462 -------VTSKHVYWSD-NGELVAIAG-DDSFYILKFNA 491 (794)
T ss_pred -------eccceeEEec-CCCEEEEEe-cCceeEEEecH
Confidence 5555788885 566666555 55566766654
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-35 Score=290.07 Aligned_cols=271 Identities=17% Similarity=0.272 Sum_probs=236.8
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
..++.+|...|+.+-|+|+-. +.++++.|++|++||..+|+... .+.||++.|..++|+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a 160 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDA 160 (406)
T ss_pred hhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEec
Confidence 345666999999999999988 79999999999999999998865 5899999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecccc
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1114)
.|++||+++.|-.+++||..+. ..+...+.+|...|.++.|-|.|. ++++++.|.+|+.|++.+|.+++++.+|..
T Consensus 161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~e 236 (406)
T KOG0295|consen 161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSE 236 (406)
T ss_pred CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchH
Confidence 9999999999999999999863 233337889999999999999998 899999999999999999999999999999
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEec-CCCCEE
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD-TTKNRF 589 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~-~~~~~l 589 (1114)
.|..+. +..||.++++++.|.++++|-+.+..+...+..|...|.+++|.|...+--. ....-+ ..+.++
T Consensus 237 wvr~v~--v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i-------~~at~~~~~~~~l 307 (406)
T KOG0295|consen 237 WVRMVR--VNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI-------SEATGSTNGGQVL 307 (406)
T ss_pred hEEEEE--ecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcch-------hhccCCCCCccEE
Confidence 999998 4678899999999999999999999999999999999999999887641100 000000 134689
Q ss_pred EEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
.+++.|++|++||+.++.++.++.+|. ..|..++|+|.|+||+++.+|+++++||+.+. ++.+.+
T Consensus 308 ~s~SrDktIk~wdv~tg~cL~tL~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~ 372 (406)
T KOG0295|consen 308 GSGSRDKTIKIWDVSTGMCLFTLVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTL 372 (406)
T ss_pred EeecccceEEEEeccCCeEEEEEeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeecc
Confidence 999999999999999999999999875 48999999999999999999999999999887 555544
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.4e-34 Score=267.96 Aligned_cols=230 Identities=20% Similarity=0.303 Sum_probs=188.9
Q ss_pred eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccC
Q 001248 372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 451 (1114)
Q Consensus 372 ~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~ 451 (1114)
-||++++.|.+|++|...+|.+... +....+.|+.+.+.||++.||+++.. .|++||+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S 70 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNS 70 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEccC
Confidence 3899999999999999999998863 44456789999999999999999765 599999999
Q ss_pred CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec
Q 001248 452 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 531 (1114)
Q Consensus 452 ~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 531 (1114)
+... +..++.+|...|.++.|-.||+ .++|||+||+++|||++...+.+.++ |..+|+++..++.. .-|++|..
T Consensus 71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~dq 144 (311)
T KOG0315|consen 71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISGDQ 144 (311)
T ss_pred CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEeecC
Confidence 8753 5668999999999999999999 79999999999999999977766666 77999999987655 57999999
Q ss_pred CCeEEEEEcCCCCCeeeecC-CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc---
Q 001248 532 DGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--- 607 (1114)
Q Consensus 532 d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--- 607 (1114)
+|.|++||+....+...+.. ....+.++.+.||| .+++++...|..++|++-++.
T Consensus 145 sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg---------------------sml~a~nnkG~cyvW~l~~~~~~s 203 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG---------------------SMLAAANNKGNCYVWRLLNHQTAS 203 (311)
T ss_pred CCcEEEEEccCCccccccCCCCCcceeeEEEcCCC---------------------cEEEEecCCccEEEEEccCCCccc
Confidence 99999999987655443322 23345555555555 578999999999999986643
Q ss_pred ---eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 608 ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 608 ---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++..+..| ...+..+.+|||+++|++++.|.+++||+..+.
T Consensus 204 ~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 204 ELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred cceEhhheecc--cceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 33444444 447889999999999999999999999987543
No 35
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.7e-34 Score=265.60 Aligned_cols=281 Identities=14% Similarity=0.220 Sum_probs=235.4
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc-ceeecccccccccc
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR-LLRTFENLAYDASR 666 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~ 666 (1114)
+|++++.|.+||+|...+|.+..++.... ..|+.+.+.||++.|++++. ..||+||++++.. .+..+
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~d--sqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~--------- 79 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPD--SQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF--------- 79 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCc--cceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE---------
Confidence 58899999999999999999999998664 47999999999999999886 6899999887621 01000
Q ss_pred CCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccC
Q 001248 667 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 746 (1114)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 746 (1114)
T Consensus 80 -------------------------------------------------------------------------------- 79 (311)
T KOG0315|consen 80 -------------------------------------------------------------------------------- 79 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEE
Q 001248 747 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 826 (1114)
Q Consensus 747 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~ 826 (1114)
. +|...|+++.|
T Consensus 80 ------------------------------------------------------------------e--~h~kNVtaVgF 91 (311)
T KOG0315|consen 80 ------------------------------------------------------------------E--GHTKNVTAVGF 91 (311)
T ss_pred ------------------------------------------------------------------e--ccCCceEEEEE
Confidence 0 16777888999
Q ss_pred eeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc-cccC
Q 001248 827 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKR 904 (1114)
Q Consensus 827 s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~-h~~~ 904 (1114)
..||+++++|+ ||+++|||+....+.+.++ |..+|+++..+| +...|++|..+|.|++||+....+...+.. ....
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~ 169 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS 169 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence 99999999999 8999999999877777776 679999999999 888899999999999999998776665543 4467
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001248 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 982 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~ 982 (1114)
|.++...|||.+|+.+..-|+..+|++-+..... ..++..++.|. +.+..+.+|||+++||+ +.|.+++||++.+
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~---~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN---GHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc---ceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 9999999999999999999999999997733211 22233333443 57899999999999999 6999999999998
Q ss_pred CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 983 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
. ...+....+|.+.+...+||.||+||++|+.|+.+++|+++.++.+....
T Consensus 247 ~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 247 F-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred c-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 8 44555566999999999999999999999999999999999999998876
No 36
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-33 Score=287.06 Aligned_cols=279 Identities=15% Similarity=0.259 Sum_probs=242.2
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
.+..|++++|+.+|..|+++..||.+++|+... .++.. + ..|.++|.++.|+..
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-----------------------~l~~t-l--~~HkgPI~slKWnk~ 287 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-----------------------NLIST-L--GQHKGPIFSLKWNKK 287 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCc-----------------------hhhhh-h--hccCCceEEEEEcCC
Confidence 457899999999999999999999999998642 22211 1 129999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEE
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 908 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 908 (1114)
|.||++++ |+++.+||..++...+.+.-|..+-..+.|- +..-+|+.+.||.|+|+.+....++.++.||.++|.+|
T Consensus 288 G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 288 GTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL 365 (524)
T ss_pred CCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEE
Confidence 99999999 9999999999999999888888876778886 45678999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC---------cEEEE-EeCCeEEEE
Q 001248 909 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---------IHFLV-VHETQLAIF 978 (1114)
Q Consensus 909 ~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg---------~~l~~-~~d~~i~iw 978 (1114)
.|.|.|.+|+|+|.|+|++||++... .+...+..|.. .|..+.|+|+| ..+++ +.|++|++|
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~-----~~~~~l~~Hsk---ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lw 437 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQS-----NSVHDLQAHSK---EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLW 437 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCC-----cchhhhhhhcc---ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEE
Confidence 99999999999999999999998763 34455556654 78899999964 45555 799999999
Q ss_pred EcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCC
Q 001248 979 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1058 (1114)
Q Consensus 979 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1058 (1114)
|+..+.++..+. .|..+|++++|||+|+|||+|+.||.|.+|++.++++..... + ...|. .++|+.
T Consensus 438 dv~~gv~i~~f~--kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------~--~~~If--el~Wn~- 503 (524)
T KOG0273|consen 438 DVESGVPIHTLM--KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------G--TGGIF--ELCWNA- 503 (524)
T ss_pred EccCCceeEeec--cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec-------C--CCeEE--EEEEcC-
Confidence 999999999987 899999999999999999999999999999999999998876 2 22255 899998
Q ss_pred CCCeEEEEeCCCcEEEEecc
Q 001248 1059 EPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1059 d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
+|+.|..+-.||.++|-|+.
T Consensus 504 ~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCEEEEEecCCCceEEEec
Confidence 57899999999999998874
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.9e-33 Score=274.43 Aligned_cols=330 Identities=15% Similarity=0.192 Sum_probs=261.2
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
....|++.|.+++.+|+.+ ++|||+.|..-.||+..+|+... .+.+|++.|+++.||.||
T Consensus 59 tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~-------------------eltgHKDSVt~~~Fshdg 118 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAG-------------------ELTGHKDSVTCCSFSHDG 118 (399)
T ss_pred ehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCccee-------------------EecCCCCceEEEEEccCc
Confidence 3444999999999999777 69999999999999999998665 489999999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
.+||+|+.+|.|+||+..++.... ++.+....+.-+.|.|-+. +|+.|+.||.+.+|.+.++...+.+.||..++
T Consensus 119 tlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~c 193 (399)
T KOG0296|consen 119 TLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPC 193 (399)
T ss_pred eEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCCCc
Confidence 999999999999999999998666 4545667788999999888 89999999999999999988889999999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
++=.|. |+|+.++++..||+|++|+..++.+...+....+ ....++.++..+..++.|
T Consensus 194 t~G~f~--pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~--------------------~~~~~~~~~~~~~~~~~g 251 (399)
T KOG0296|consen 194 TCGEFI--PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG--------------------LELPCISLNLAGSTLTKG 251 (399)
T ss_pred cccccc--CCCceEEEEecCceEEEEecCCCceeEEeccccc--------------------CcCCccccccccceeEec
Confidence 998875 4579999999999999999999877765543221 133344555555578888
Q ss_pred eCCCeEEEEECCCcceEEEeccC------CCCCCcCeEEE---cCCCCEEEEEeCCCcEEEEEccCCccceeeccccccc
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDAD------GGLPASPRIRF---NKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD 663 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~---s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 663 (1114)
+.++.+++-+..+|+.+...... .+...+.++.+ +..=.+.|+|+-||+|.|||....
T Consensus 252 ~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~------------- 318 (399)
T KOG0296|consen 252 NSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS------------- 318 (399)
T ss_pred cCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc-------------
Confidence 89999999998888877766521 01112222222 223344455555555555554322
Q ss_pred cccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccccc
Q 001248 664 ASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 743 (1114)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~ 743 (1114)
T Consensus 319 -------------------------------------------------------------------------------- 318 (399)
T KOG0296|consen 319 -------------------------------------------------------------------------------- 318 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccE
Q 001248 744 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 823 (1114)
Q Consensus 744 ~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~ 823 (1114)
. +.. . -.|...|..
T Consensus 319 ----------------------------------------~----------------------~R~--~--c~he~~V~~ 332 (399)
T KOG0296|consen 319 ----------------------------------------T----------------------LRH--I--CEHEDGVTK 332 (399)
T ss_pred ----------------------------------------h----------------------hhe--e--ccCCCceEE
Confidence 0 000 0 016777888
Q ss_pred EEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 824 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 824 v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
+.|-+ ..+|++++ +|.|+.||.++|++..++.+|...|.+++++| +.+++++++.|++.+||++.
T Consensus 333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 88877 56777777 99999999999999999999999999999999 99999999999999999864
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-34 Score=280.81 Aligned_cols=301 Identities=21% Similarity=0.326 Sum_probs=255.8
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|..+|+.+-|.|+-..+++++.|++|++||..+|+..+ .++||...|.+|+|+..|+ ++++++.|-.+++|
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW 177 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence 377899999999999999999999999999999999999765 7999999999999999999 89999999999999
Q ss_pred eCCC-CcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 495 DATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 495 d~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
|.++ -++++.+.+|...|.+++|.|.+ .+
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~------------------------------------------------ 207 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLG--DH------------------------------------------------ 207 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecC--Ce------------------------------------------------
Confidence 9887 67788889999999998876543 23
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
+++++.|.+|+.|++.++.++.++.+|.. .|..+..+.||.++++++.|.++++|-+.++ ++
T Consensus 208 ---------------ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti~As~s~dqtl~vW~~~t~-~~ 269 (406)
T KOG0295|consen 208 ---------------ILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTIIASCSNDQTLRVWVVATK-QC 269 (406)
T ss_pred ---------------eeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeEEEecCCCceEEEEEeccc-hh
Confidence 55566666677777778888888887754 7889999999999999999999999988776 33
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
...++
T Consensus 270 k~~lR--------------------------------------------------------------------------- 274 (406)
T KOG0295|consen 270 KAELR--------------------------------------------------------------------------- 274 (406)
T ss_pred hhhhh---------------------------------------------------------------------------
Confidence 33332
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
.|...|.+++|.|...+ ....+ ..
T Consensus 275 ---------------~hEh~vEci~wap~~~~--~~i~~---------------------------------------at 298 (406)
T KOG0295|consen 275 ---------------EHEHPVECIAWAPESSY--PSISE---------------------------------------AT 298 (406)
T ss_pred ---------------ccccceEEEEecccccC--cchhh---------------------------------------cc
Confidence 26667778888776431 00000 00
Q ss_pred CCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
+ .. ..++++.+++ |++|++||+.++.++.++.+|...|..++|+| +|++|+++.+|+++++||++++
T Consensus 299 ~--~~---------~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 299 G--ST---------NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred C--CC---------CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccc
Confidence 0 00 1567889999 99999999999999999999999999999999 9999999999999999999999
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
++...+..|..-|+++.|..+..+++||+-|.++++|.-
T Consensus 367 ~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 367 QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999964
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=282.74 Aligned_cols=293 Identities=18% Similarity=0.274 Sum_probs=240.2
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
++..|++.|+.+.||++|+|||+++.|.+..||++.....++...++.+|..+|..+.||||++ ++++|+.|..+++|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 6889999999999999999999999999999999987776777778999999999999999999 79999999999999
Q ss_pred eCCCCcceeEee-ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 495 DATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 495 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
|+.+|.+...+. +|...+.+++|.| ||..+++|+.|+++..||++.... ....+.+
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~---------------------~~W~gvr 353 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNIL---------------------GNWEGVR 353 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchh---------------------hcccccc
Confidence 999999887774 4568899999865 557899999999999999875321 1112222
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
...+..+++.+||.++++.+.|..|++++..+......+..+ .+|+++++|.|++++++.-.+..+++||+... ..
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-~l 429 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSISKDGKLALVNLQDQEIHLWDLEEN-KL 429 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEEcCCCcEEEEEcccCeeEEeecchh-hH
Confidence 234455555556668999999999999999887666555433 36999999999999999999999999999855 55
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
++.+.||...
T Consensus 430 v~kY~Ghkq~---------------------------------------------------------------------- 439 (519)
T KOG0293|consen 430 VRKYFGHKQG---------------------------------------------------------------------- 439 (519)
T ss_pred HHHhhccccc----------------------------------------------------------------------
Confidence 5555544321
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
.+++-.
T Consensus 440 ------------------------------~fiIrS-------------------------------------------- 445 (519)
T KOG0293|consen 440 ------------------------------HFIIRS-------------------------------------------- 445 (519)
T ss_pred ------------------------------ceEEEe--------------------------------------------
Confidence 111111
Q ss_pred CCCCCCCccEEEEe-eCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 814 DSNPEEAVPCFALS-KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s-~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
||- .|.+++++|+ |++|+||+..+++++.++.||...|.|++|+|.+..++|+|++||+|+||....
T Consensus 446 -----------CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 446 -----------CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred -----------ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 111 2557899999 999999999999999999999999999999999999999999999999998653
No 40
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-29 Score=270.73 Aligned_cols=547 Identities=14% Similarity=0.150 Sum_probs=379.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCC-CCeeEEEEcCCCCeE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLF 435 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~l 435 (1114)
...+|+|++||.+.+. ||.+-.+|.|.||++..+-... .++.++. ..|.+++|+ +|..|
T Consensus 24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeE
Confidence 5678999999999996 9999999999999998753332 2445554 689999999 56677
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee--EeeccccCEE
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVY 513 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~ 513 (1114)
.+.+.+|+|.-||+.+++... .+....+.|++++.+|.+. .++.|++||.+...+...++..+ .|....+.|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 888899999999999988665 6777788999999999998 78999999988888887777654 4555678999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC--------CCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--------~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
++.|+++ +..+++|+.||.|++||...+........ ...-|.++.+-.++.
T Consensus 159 slsw~~~--~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t------------------- 217 (691)
T KOG2048|consen 159 SLSWNPT--GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST------------------- 217 (691)
T ss_pred EEEecCC--ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-------------------
Confidence 9998654 46799999999999999998776652111 122455555555554
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccc
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1114)
+++|..-|+|.+||...+.+++.+..+. ..|.+++..+++..+++++-|+.|.-|...++...
T Consensus 218 ---I~sgDS~G~V~FWd~~~gTLiqS~~~h~--adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------ 280 (691)
T KOG2048|consen 218 ---IASGDSAGTVTFWDSIFGTLIQSHSCHD--ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------ 280 (691)
T ss_pred ---EEEecCCceEEEEcccCcchhhhhhhhh--cceeEEEEcCCCCeEEEccCCCceEEEEecCCccc------------
Confidence 9999999999999999999999988774 47999999999999999999999988876555221
Q ss_pred cCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccccccc
Q 001248 666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 745 (1114)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 745 (1114)
|-...
T Consensus 281 ---------------------------------------------------------------wv~~~------------ 285 (691)
T KOG2048|consen 281 ---------------------------------------------------------------WVINS------------ 285 (691)
T ss_pred ---------------------------------------------------------------eeeec------------
Confidence 11000
Q ss_pred CccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccE-E
Q 001248 746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC-F 824 (1114)
Q Consensus 746 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~-v 824 (1114)
+...|...+.+++..++ .+++++.|..+.+-....... .+.. +. ...+-.+ +
T Consensus 286 ~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~h~----~~-------~~~p~~~~v 338 (691)
T KOG2048|consen 286 RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MDHR----QK-------NLFPASDRV 338 (691)
T ss_pred cccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hhhh----cc-------cccccccee
Confidence 01237788899998887 799999999888754332100 0000 00 0001111 2
Q ss_pred EEeeCCCEEEEEeCCeEEEEEcCCCccc---------cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 825 ALSKNDSYVMSASGGKISLFNMMTFKTM---------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 825 ~~s~d~~~l~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
...+..++++.-.+..+.+|.+.+.... +........|.+.+.|| +|++||.+.- ..++||.+.....+
T Consensus 339 ~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~v 416 (691)
T KOG2048|consen 339 SVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNV 416 (691)
T ss_pred ecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCcce
Confidence 3334444444444788888888665211 11223445799999999 9999998863 46888887652211
Q ss_pred --E---eecccccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 896 --S---KLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 896 --~---~l~~h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
. ....-.-.+..+.|+-|+..++.++ .+..+.++++++........+... .....|..++.|+||+|+|+
T Consensus 417 k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa 492 (691)
T KOG2048|consen 417 KVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAA 492 (691)
T ss_pred eEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEE
Confidence 1 1222334577889999998888888 677888888887543322211111 22358999999999999999
Q ss_pred -EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECC-CCCEEEEEEcCCeEEEEEcCCCeeeEEeC-CCcccCCCCCCC
Q 001248 970 -VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRIN-PSAYLPAGVSSS 1046 (1114)
Q Consensus 970 -~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~-~~~~~~~~~~~~ 1046 (1114)
+..+.|.+|++++++...... .-...|+.++|+| +-..|+.+..|+.|+=||++..++-.-.. ....+|.....-
T Consensus 493 ~~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l 570 (691)
T KOG2048|consen 493 ISTRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTL 570 (691)
T ss_pred EeccceEEEEEcccceeecchh--ccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhc
Confidence 789999999999887654432 1247899999995 55678889999999999994433211000 001122111111
Q ss_pred CccceEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1047 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1047 ~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
.-....+.|+|.+...+++ -+.+.+.+.|.
T Consensus 571 ~~~~~gisfd~~n~s~~~~-~~a~w~~~id~ 600 (691)
T KOG2048|consen 571 IPGIPGISFDPKNSSRFIV-YDAHWSCLIDF 600 (691)
T ss_pred CCCCceEEeCCCCccEEEE-EcCcEEEEEec
Confidence 1122367788755444443 33455555554
No 41
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.6e-30 Score=274.81 Aligned_cols=502 Identities=13% Similarity=0.166 Sum_probs=346.5
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccc-cCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC
Q 001248 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1114)
Q Consensus 421 ~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 499 (1114)
.+|.+||||.+.+.||.+=.||.|.||++..+-.... .+.++ +..|.+++|++.++ |++.+.+|.|.-||+.++
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHTL 100 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEecccC
Confidence 4899999999999999999999999999998644333 45554 45899999996665 899999999999999999
Q ss_pred cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeee--ecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
+.+..+....+.|++++.++.. ..++.|+.||.+...+......... +..... .+
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s---------------------Rv 157 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS---------------------RV 157 (691)
T ss_pred ceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccc---------------------eE
Confidence 9999999999999999987765 6899999999777776655433321 111223 44
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEec-----cCC-CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
-++.|+|++..+++|+.||.|++||..++..+.... ... ...-|.++.|-.++ .|++|...|+|.+||...+
T Consensus 158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g- 235 (691)
T KOG2048|consen 158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG- 235 (691)
T ss_pred EEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-
Confidence 455555555679999999999999999988776322 111 22234556666444 6788888888999987766
Q ss_pred cceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEe
Q 001248 652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1114)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1114)
.+++.+
T Consensus 236 TLiqS~-------------------------------------------------------------------------- 241 (691)
T KOG2048|consen 236 TLIQSH-------------------------------------------------------------------------- 241 (691)
T ss_pred chhhhh--------------------------------------------------------------------------
Confidence 222222
Q ss_pred ccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccccc
Q 001248 732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 811 (1114)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 811 (1114)
..|...|.+++.+++++++++++.|+.+.-+....... -|-...
T Consensus 242 ----------------~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~-------------~wv~~~------- 285 (691)
T KOG2048|consen 242 ----------------SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS-------------EWVINS------- 285 (691)
T ss_pred ----------------hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc-------------ceeeec-------
Confidence 12678899999999999999999999888876653211 021111
Q ss_pred CCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeE-EEEEecCCCcEEEEEeCCCcEEEEEc
Q 001248 812 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT-FLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 812 ~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~-~l~~sp~d~~~la~g~~dg~v~iwd~ 889 (1114)
....|...+.+++..++ .+++|+ |.++.+-.....+...........-. -+...| .++|..--.+..+.+|.+
T Consensus 286 -~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrl 360 (691)
T KOG2048|consen 286 -RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRL 360 (691)
T ss_pred -cccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceec
Confidence 11238889999999887 777777 88877765543222111110001111 122333 334444445667778877
Q ss_pred ccce---------EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEE
Q 001248 890 RVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 960 (1114)
Q Consensus 890 ~~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~f 960 (1114)
.+.. +++-...-...|.+.+.||||++++.+.-- .++||.+..........+...... ......+.|
T Consensus 361 GS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~---~~~a~~i~f 436 (691)
T KOG2048|consen 361 GSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLA---LLDASAISF 436 (691)
T ss_pred cCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhh---hccceeeEE
Confidence 6541 122222233559999999999999987644 478888876332222221111111 125678899
Q ss_pred ccCCcEEEE-E-eCCeEEEEEcCCCce--eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCC
Q 001248 961 HQDQIHFLV-V-HETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPS 1036 (1114)
Q Consensus 961 spdg~~l~~-~-~d~~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~ 1036 (1114)
+-|+..++. + .+..+.+++..+... +..+...+-...|..+..|+||+|||+.+.+|.|.+|++.+++.......
T Consensus 437 tid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~r- 515 (691)
T KOG2048|consen 437 TIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVR- 515 (691)
T ss_pred EecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhc-
Confidence 999888777 5 667888888776543 33333223356899999999999999999999999999999987754420
Q ss_pred cccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1037 AYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1037 ~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+. ...++++|+|.+-+.|+.+..|+.|+-+|++..+
T Consensus 516 --ln-------~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 516 --LN-------IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred --cC-------cceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 11 3344788887777889999999999999995544
No 42
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.4e-32 Score=256.93 Aligned_cols=246 Identities=20% Similarity=0.340 Sum_probs=196.5
Q ss_pred EeccCCCCceEEEEcCC-CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 353 RTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spd-g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
.+.+|++.|+.++|+|- |. +||+++.|..|+||+...+.....+ ..+-.+|+..|+.+||||.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck---------------~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCK---------------TVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred eecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEE---------------EeccccchheeeeeeecCC
Confidence 34459999999999998 77 7999999999999999864333211 1134689999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC---cceeEeecc
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGH 508 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h 508 (1114)
|++||+|+-|.++.||.-..++ .....++.||...|.|++|+++|. +|||++.|++|.||.+..+ .++..++.|
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~H 149 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEH 149 (312)
T ss_pred CcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence 9999999999999999877554 556678999999999999999999 8999999999999998854 456789999
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC---CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
...|..+.|+|+. .+|++++.|++|++|+-... .+..++..+...|.+ +.|++.
T Consensus 150 tqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~---------------------~~F~~~ 206 (312)
T KOG0645|consen 150 TQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWS---------------------LAFDNI 206 (312)
T ss_pred cccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEE---------------------EEecCC
Confidence 9999999999987 49999999999999976531 234445555444444 445555
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
|..|++++.|++++||...+. +. ..+...+..++|. ...|++++.|+.|++|...
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred CceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 557999999999999986522 11 1123457788888 5578999999999999654
No 43
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=263.26 Aligned_cols=291 Identities=20% Similarity=0.338 Sum_probs=239.5
Q ss_pred ccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 414 ~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
..+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... ....++.+|.++|..+.|.+|+. .+++++.|++|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 4688999999999999999999999999999999976532 22336889999999999999999 7999999999999
Q ss_pred EeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
||+++|++++.+++|..-|++++.. ..+-.++.+++.|+++++||+++.+...++.. ..+++++.|
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f------------ 182 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGF------------ 182 (338)
T ss_pred EecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEe------------
Confidence 9999999999999999999999832 23335788889999999999998766654432 223444444
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc--
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI-- 651 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~-- 651 (1114)
..++..+++|+-|+.|++||++....+..+.+| ...|+.+..+++|.++.+-+-|.++++||++.-.
T Consensus 183 ---------~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh--~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 183 ---------KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH--ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred ---------cccccceeeccccCceeeeccccCcceEEeecc--cCceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 444457999999999999999999999999877 5589999999999999999999999999975431
Q ss_pred -cceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 652 -RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 652 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
+++..++++.
T Consensus 252 ~R~v~if~g~~--------------------------------------------------------------------- 262 (338)
T KOG0265|consen 252 QRCVKIFQGHI--------------------------------------------------------------------- 262 (338)
T ss_pred CceEEEeecch---------------------------------------------------------------------
Confidence 0011111000
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
|
T Consensus 263 -------------------h------------------------------------------------------------ 263 (338)
T KOG0265|consen 263 -------------------H------------------------------------------------------------ 263 (338)
T ss_pred -------------------h------------------------------------------------------------
Confidence 0
Q ss_pred cCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
+.......++|+|++..+..|+ |..+++||..+...+..+++|.+.|.+++|+| ...+|.+++.|.+|++=
T Consensus 264 -----nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 264 -----NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLG 335 (338)
T ss_pred -----hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEee
Confidence 0122244578999999999998 99999999999999999999999999999999 88999999999999874
No 44
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-33 Score=306.37 Aligned_cols=274 Identities=15% Similarity=0.219 Sum_probs=234.1
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....+.+..|++|+..++.+..|..|++|.+...+..+ ++ +.. +
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~------------------------lk---~~~---------~ 420 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK------------------------LK---DAS---------D 420 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhcc------------------------cc---chh---------h
Confidence 45678999999999999999999999999875321100 00 000 1
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEE
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 908 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 908 (1114)
...+=+.+ |-.+...|-.+....+++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++...+||..+|+.+
T Consensus 421 l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 421 LSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred hccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 11111222 33366667777777788999999999999999 99999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceee
Q 001248 909 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK 987 (1114)
Q Consensus 909 ~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~ 987 (1114)
.|+|-|-++||+|.|++-++|..+. ..+++++.+|.. .|.|+.|+|++.|+++ +.|.++++||+.+|..++
T Consensus 500 ~F~P~GyYFatas~D~tArLWs~d~-----~~PlRifaghls---DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR 571 (707)
T KOG0263|consen 500 QFAPRGYYFATASHDQTARLWSTDH-----NKPLRIFAGHLS---DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR 571 (707)
T ss_pred EecCCceEEEecCCCceeeeeeccc-----CCchhhhccccc---ccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence 9999999999999999999999988 346778888874 8999999999999999 689999999999999999
Q ss_pred eeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe
Q 001248 988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
.|. ||.++|++++|||+|++|++|+.||.|.+||+.+++++..+. +|.+. ++ ++.|+. ||..||+|+
T Consensus 572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~Ht~t-i~--SlsFS~-dg~vLasgg 638 (707)
T KOG0263|consen 572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GHTGT-IY--SLSFSR-DGNVLASGG 638 (707)
T ss_pred Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cccCc-ee--EEEEec-CCCEEEecC
Confidence 997 899999999999999999999999999999999999998887 55333 66 899998 799999999
Q ss_pred CCCcEEEEeccCCC
Q 001248 1068 SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1068 ~Dg~v~vW~i~~~~ 1081 (1114)
.|++|++||+..-.
T Consensus 639 ~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 639 ADNSVRLWDLTKVI 652 (707)
T ss_pred CCCeEEEEEchhhc
Confidence 99999999997755
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=271.09 Aligned_cols=252 Identities=19% Similarity=0.300 Sum_probs=219.7
Q ss_pred CCcceeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeE
Q 001248 347 LPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1114)
Q Consensus 347 ~~~~~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1114)
.|-++.+.+. |.+.|.|+++-|-.++ ++||+.|++|.|||+.+|+... .+.||-..|..
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~vr~ 198 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKL-------------------TLTGHIETVRG 198 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEE-------------------eecchhheeee
Confidence 3445555555 9999999999999886 9999999999999999998876 48999999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
+++|+--.||.+++.|+.|+-||+...+.++ .+.||-..|.|++..|.-. .|+||+.|.+++|||+++...+.++
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l 273 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVL 273 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEe
Confidence 9999999999999999999999999988777 7889999999999999988 8999999999999999999999999
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
.||..+|..+.+.+.. ..+++|+.|++|++||+..++....+..|...+.+++. +|.
T Consensus 274 ~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~l---------------------hP~ 330 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCL---------------------HPK 330 (460)
T ss_pred cCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEec---------------------CCc
Confidence 9999999999875543 58999999999999999988877776666655555554 455
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.+.+++++.| .|+.|++..|..+..+.++ ...|++++.+.|| ++++|++.|.+.+||.+++
T Consensus 331 e~~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~nsD~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 331 ENLFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred hhhhhccCCc-cceeccCCccchhhccccc--cceeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence 5567777765 5899999999999987766 4468899988776 6788999999999999988
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-30 Score=283.92 Aligned_cols=449 Identities=15% Similarity=0.256 Sum_probs=313.4
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
+..-+..|..++|+|..-+++++-..|.|++||..-+..+. .|.+|.++|..++|.|++. +++|||+|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 33455689999999999999999999999999999888777 7899999999999999999 899999999999999
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeeccc
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~ 575 (1114)
..+.+++.++.||.+.|..+.|+..- .+++|+|.|.+|++|++.+.+++..+.+|.+.|.+..|.|.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt----------- 146 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT----------- 146 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCc-----------
Confidence 99999999999999999999998765 69999999999999999999999999999887776666553
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcce---------------------------EEEeccCCCCCCcCeEEEcC
Q 001248 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---------------------------LTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 576 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~~~v~~~~~s~ 628 (1114)
...++++|-|.+||+||+..-+. +...-..+|...|+-++|+|
T Consensus 147 ----------EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 147 ----------EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred ----------cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 44799999999999999853221 11111223344566667776
Q ss_pred CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCc
Q 001248 629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1114)
Q Consensus 629 d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1114)
.-.++++|+.|..|++|.+...
T Consensus 217 TlpliVSG~DDRqVKlWrmnet---------------------------------------------------------- 238 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNET---------------------------------------------------------- 238 (1202)
T ss_pred CcceEEecCCcceeeEEEeccc----------------------------------------------------------
Confidence 6666777777777777755322
Q ss_pred cccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCC
Q 001248 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788 (1114)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 788 (1114)
+.|.+++ | .+|.+.|+++.|+|..+.+++.++|++|+|||+...+.
T Consensus 239 ------------------KaWEvDt------c-------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~--- 284 (1202)
T KOG0292|consen 239 ------------------KAWEVDT------C-------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS--- 284 (1202)
T ss_pred ------------------cceeehh------h-------hcccCCcceEEecCccceeEecCCCccEEEEecccccc---
Confidence 1233221 1 45999999999999999999999999999999863211
Q ss_pred CCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEe
Q 001248 789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH 868 (1114)
Q Consensus 789 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 868 (1114)
+.. +. ........++..|..++++.|.|+.+.||.++... ++. +.+
T Consensus 285 -------------------v~t-fr--rendRFW~laahP~lNLfAAgHDsGm~VFkleREr----------pa~--~v~ 330 (1202)
T KOG0292|consen 285 -------------------VQT-FR--RENDRFWILAAHPELNLFAAGHDSGMIVFKLERER----------PAY--AVN 330 (1202)
T ss_pred -------------------eee-ee--ccCCeEEEEEecCCcceeeeecCCceEEEEEcccC----------ceE--EEc
Confidence 110 11 14567888999999999999999988888876422 222 333
Q ss_pred cCCCcEEEEEeCCCcEEEEEcccce--EEEeeccc---ccCeeEEEEcCCCCEE-EEEeCC-CcEEEEeCCCCccccccc
Q 001248 869 PQDNNIIAIGMDDSSIQIYNVRVDE--VKSKLKGH---SKRITGLAFSHALNVL-VSSGAD-SQLCVWSSDGWEKQKNRF 941 (1114)
Q Consensus 869 p~d~~~la~g~~dg~v~iwd~~~~~--~~~~l~~h---~~~V~~l~~s~d~~~l-~s~s~D-~~v~iwd~~~~~~~~~~~ 941 (1114)
++ .|...- |..|+-+|+.+.+ .+..++.- ..++.++.++|....+ ++...| +.--++.+..........
T Consensus 331 --~n-~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~ 406 (1202)
T KOG0292|consen 331 --GN-GLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG 406 (1202)
T ss_pred --CC-EEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc
Confidence 33 333333 8899999998854 33445543 3678899999975544 443333 444455554421111110
Q ss_pred cccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEE
Q 001248 942 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1020 (1114)
Q Consensus 942 ~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~ 1020 (1114)
.....+ .-....|-..+++.+.. .+.++.+-++.+.... .+.. ...+..|-+..+|.+|+.. ...|.
T Consensus 407 ~~~~k~------tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtk-kl~~---~~~~~~IF~ag~g~lll~~--~~~v~ 474 (1202)
T KOG0292|consen 407 KDVKKG------TGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTK-KLLL---PESTDDIFYAGTGNLLLRS--PDSVT 474 (1202)
T ss_pred hhhhcC------CCCceEEEEecceEEEEecCcceEEecccchhhh-cccC---cccccceeeccCccEEEEc--CCeEE
Confidence 000000 11223333333443332 3555655555433222 2211 1234555666677665543 56799
Q ss_pred EEEcCCCeeeEEeC
Q 001248 1021 VFSAANLKLRCRIN 1034 (1114)
Q Consensus 1021 vwd~~~~~~~~~~~ 1034 (1114)
+||+..++.+..++
T Consensus 475 lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 475 LFDVQQKKKVGSIK 488 (1202)
T ss_pred EEEeecceEEEEEe
Confidence 99999998888776
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.3e-32 Score=261.46 Aligned_cols=256 Identities=18% Similarity=0.229 Sum_probs=218.4
Q ss_pred CcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEE
Q 001248 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1114)
Q Consensus 348 ~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1114)
........+|+++|..+.|+|+|.+ +|+|+.|..|.+|++.....-. .++++|.++|..+.
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~-~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~ 97 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSC-FASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELH 97 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCe-EeecCCcceEEEEeccccccce------------------eeeccccceeEeee
Confidence 3344566779999999999999995 9999999999999976433221 15789999999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeec
Q 001248 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507 (1114)
Q Consensus 428 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 507 (1114)
|.+|+..|++++.|++|+.||.++|++.+ .+.+|..-|+++.-+.-|.. ++.|++.|+++++||+++..+++++.
T Consensus 98 ~~~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~- 172 (338)
T KOG0265|consen 98 GMRDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE- 172 (338)
T ss_pred eccCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-
Confidence 99999999999999999999999999877 68899999999997777776 78999999999999999999888885
Q ss_pred cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
..-.+++++|.. .+..+++|+-|+.|++||++.......+.+|.+.|+.+..+++|.
T Consensus 173 ~kyqltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs--------------------- 229 (338)
T KOG0265|consen 173 NKYQLTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS--------------------- 229 (338)
T ss_pred cceeEEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC---------------------
Confidence 456788888754 446899999999999999999999999999999999888888876
Q ss_pred EEEEEeCCCeEEEEECCC----cceEEEeccCCCC--CCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 588 RFLAAGDDFSIKFWDMDS----VQLLTSIDADGGL--PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++++-+.|.++++||++. .+++..+.++.+. .....++|+|++..+.+|+.|..+++||....
T Consensus 230 ~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 230 FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 688999999999999874 3456777665443 23457899999999999999999999997654
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4e-32 Score=266.83 Aligned_cols=294 Identities=16% Similarity=0.322 Sum_probs=245.9
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
++.+|.+.|.|+++.|-..++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 689999999999999999999999999999999999998655 7999999999999999888 89999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++...+..+.+|...|.++.+.|-..
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-------- 290 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP-------- 290 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC--------
Confidence 999999999999999999999998876 5899999999999999999999999999998888877665433
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
.+++|+.|++|++||+..|+...++..|. ..+.+++.+|....+++++.| .|+-|++..+ ..+
T Consensus 291 -------------qvit~S~D~tvrlWDl~agkt~~tlt~hk--ksvral~lhP~e~~fASas~d-nik~w~~p~g-~f~ 353 (460)
T KOG0285|consen 291 -------------QVITGSHDSTVRLWDLRAGKTMITLTHHK--KSVRALCLHPKENLFASASPD-NIKQWKLPEG-EFL 353 (460)
T ss_pred -------------ceEEecCCceEEEeeeccCceeEeeeccc--ceeeEEecCCchhhhhccCCc-cceeccCCcc-chh
Confidence 59999999999999999999999988774 479999999999999998886 5788887766 222
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
..+.
T Consensus 354 ~nls---------------------------------------------------------------------------- 357 (460)
T KOG0285|consen 354 QNLS---------------------------------------------------------------------------- 357 (460)
T ss_pred hccc----------------------------------------------------------------------------
Confidence 2222
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
+|..-|.+++.+.|+- +++++++|.+..||+..+..-..+.... .-|.+
T Consensus 358 --------------gh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~~t~v---------qpGSl------- 406 (460)
T KOG0285|consen 358 --------------GHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRGQTIV---------QPGSL------- 406 (460)
T ss_pred --------------cccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccccccc---------cCCcc-------
Confidence 2666777888877774 8889999999999987543211111000 01111
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT 848 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~ 848 (1114)
..+..|.+.+|...|..|+++. |.+|++|.-..
T Consensus 407 -~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 407 -ESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred -ccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 1456789999999999999998 99999997653
No 49
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=275.34 Aligned_cols=285 Identities=16% Similarity=0.262 Sum_probs=241.2
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....|..+.+.|+|+.|++++..|...+|+.....+ ..+ + ..|++.|+++.|+++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-------------------Eti----l--QaHDs~Vr~m~ws~~ 149 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-------------------ETI----L--QAHDSPVRTMKWSHN 149 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH-------------------HHH----h--hhhcccceeEEEccC
Confidence 346789999999999999999999999997532111 001 1 139999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccccccCCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1114)
|.++++|+ +|.|++|+..- ..++.+..|. ..|++++||| ....++++++||+|+|||....+.-..+.||.-.|.+
T Consensus 150 g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 150 GTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred CCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 99999999 89999999754 4455555554 8899999999 6667889999999999999988888899999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCcee
Q 001248 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 986 (1114)
Q Consensus 908 l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~ 986 (1114)
++|+|...+|||+|.|..|++||..++. ++..+.+|.. .|..+.|++++.+|++ +.|..+++||+++.+.+
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 9999999999999999999999999954 5777777774 8999999999999999 79999999999988887
Q ss_pred eeeecCCCCcCeeEEEECC-CCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEE
Q 001248 987 KQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 987 ~~~~~~~h~~~v~~l~~s~-dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
..+. +|...|++++|+| ...+|.+|+.||.|..|.+...+.+..+. .+|... |+ +++|+| =|.+|++
T Consensus 300 ~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~------~AHd~~-iw--sl~~hP-lGhil~t 367 (464)
T KOG0284|consen 300 FTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP------PAHDGE-IW--SLAYHP-LGHILAT 367 (464)
T ss_pred HHhh--cchhhheeeccccccccceeeccCCCceEEEeccccccccCCC------cccccc-ee--eeeccc-cceeEee
Confidence 7765 8999999999999 45578899999999999999666664433 444333 77 899999 5899999
Q ss_pred EeCCCcEEEEeccCCC
Q 001248 1066 GLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1066 ~~~Dg~v~vW~i~~~~ 1081 (1114)
|+.|.++++|.-....
T Consensus 368 gsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 368 GSNDRTVRFWTRNRPG 383 (464)
T ss_pred cCCCcceeeeccCCCC
Confidence 9999999999875543
No 50
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=4.8e-30 Score=263.44 Aligned_cols=432 Identities=17% Similarity=0.239 Sum_probs=314.9
Q ss_pred eeEecc-CCCCceEEEEcCC--CCeEEEE-EecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEE
Q 001248 351 VTRTLN-QGSSPMSMDFHPV--QQTLLLV-GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 351 ~~~~~~-h~~~v~~v~~spd--g~~ll~t-g~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
.++.++ -...|+|++||+- |.++++. -+.+..+.|||+..+..... .+.-+..|...
T Consensus 146 TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a 206 (626)
T KOG2106|consen 146 TLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLA 206 (626)
T ss_pred eeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEEE
Confidence 345555 6788999999983 4543433 23345688999988766542 23345578899
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeecccc-CCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 427 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
+|.|-+.-|++....+.+..|+.+++...+....+.++. .-|.|++|.++|. ++||..+|.|.||+..+.+..+..
T Consensus 207 ~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~ 283 (626)
T KOG2106|consen 207 TFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQV 283 (626)
T ss_pred EeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEe
Confidence 999966666666667889999999988777666666554 4699999999998 899999999999998877777777
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeee--ecCCCCeeEEEEEe-------------------cC
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYS-------------------AD 564 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s-------------------~~ 564 (1114)
..|.+.|.+++... +| .|++|+.|+.|..|| ..-+.+.. +....+.+..++-. ..
T Consensus 284 ~aH~ggv~~L~~lr--~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 284 HAHDGGVFSLCMLR--DG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred eecCCceEEEEEec--Cc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 79999999999643 43 577799999999999 33333322 22222333333211 11
Q ss_pred CCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEE
Q 001248 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644 (1114)
Q Consensus 565 g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~i 644 (1114)
-.....+|.+ ...-++.+|+.+++++++.|+.+++|+ ..+++.+.... .++.|+.|+|.| .++.|+..|...+
T Consensus 360 f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 360 FTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWFV 432 (626)
T ss_pred ceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEEE
Confidence 1133334444 666788899999999999999999999 44454444332 357899999999 8999999999999
Q ss_pred EEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCC
Q 001248 645 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 724 (1114)
Q Consensus 645 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 724 (1114)
.|.++. ..+..-
T Consensus 433 ~d~e~~-~lv~~~------------------------------------------------------------------- 444 (626)
T KOG2106|consen 433 LDTETQ-DLVTIH------------------------------------------------------------------- 444 (626)
T ss_pred Eecccc-eeEEEE-------------------------------------------------------------------
Confidence 988764 222110
Q ss_pred ceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCC
Q 001248 725 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 804 (1114)
Q Consensus 725 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~ 804 (1114)
....+++.+.|+|+|.+|++++.|+.|+||.++...
T Consensus 445 ------------------------~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g-------------------- 480 (626)
T KOG2106|consen 445 ------------------------TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG-------------------- 480 (626)
T ss_pred ------------------------ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC--------------------
Confidence 124688999999999999999999999999886432
Q ss_pred CccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccccc------------------CCCCCCeEEE
Q 001248 805 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF------------------MPPPPAATFL 865 (1114)
Q Consensus 805 g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~------------------~~~~~~i~~l 865 (1114)
+...+.-.. +..+|+.+.||+|++++.+-+ |-.|..|........... ..+...|..+
T Consensus 481 -~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~ 557 (626)
T KOG2106|consen 481 -RKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAV 557 (626)
T ss_pred -cEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHh
Confidence 211111111 448899999999999999998 888999954332222111 1234456677
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccc---eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 866 AFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 866 ~~sp~d~~~la~g~~dg~v~iwd~~~~---~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
+-+. ..+++|+|.+.|+|++|...-- ....+..+|++-|++++|.-+...|++.+.|..|..|++
T Consensus 558 ~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 558 ARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 7777 7889999999999999987643 234667899999999999988889998889999999986
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.5e-31 Score=251.48 Aligned_cols=293 Identities=16% Similarity=0.222 Sum_probs=236.6
Q ss_pred cccccceEEEEEccC-cceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEE
Q 001248 748 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL 826 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~ 826 (1114)
.+|.+++..++++|- |..|++++.|..|++|+..... +=.+.. ....+|...|+++++
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~-------------------s~~ck~--vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD-------------------SWTCKT--VLDDGHKRSVRSVAW 69 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC-------------------cEEEEE--eccccchheeeeeee
Confidence 348889999999999 8899999999999999875200 001111 122359999999999
Q ss_pred eeCCCEEEEEe-CCeEEEEEcC--CCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---eEEEeecc
Q 001248 827 SKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKG 900 (1114)
Q Consensus 827 s~d~~~l~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~---~~~~~l~~ 900 (1114)
+|.|++||+++ |.++.||.-. ..+++.++.+|..+|.+++|++ +|++||+++.|..|-||.+..+ ++...+++
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 9999999876 4577889999999999999999 9999999999999999999753 67889999
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEE
Q 001248 901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE 979 (1114)
Q Consensus 901 h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd 979 (1114)
|...|..+.|+|...+|+|+|.|.+|++|.-.. .....+.+.+.+|.. .|.+++|.+.|..|++ +.|++++||.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence 999999999999999999999999999998774 234678888888874 8999999999988888 5889999998
Q ss_pred cCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
..+. ....|+..++.++|. ...|++++.|+.|++|.-...-.--.++.-......| ...|+ ++.|.|..
T Consensus 224 ~~~~------~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-e~dVN--sV~w~p~~ 292 (312)
T KOG0645|consen 224 LYTD------LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-EVDVN--SVQWNPKV 292 (312)
T ss_pred eccC------cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-ccccc--eEEEcCCC
Confidence 6511 123678999999998 5589999999999999876431111111111111122 23467 99999965
Q ss_pred CCeEEEEeCCCcEEEEecc
Q 001248 1060 PNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1060 ~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
.++|++|+.||.|++|.+.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 7899999999999999875
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.8e-32 Score=279.53 Aligned_cols=290 Identities=19% Similarity=0.307 Sum_probs=249.0
Q ss_pred cccCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEccC-CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEE
Q 001248 415 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~sp-dg~~las~~~dg~i~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~ 492 (1114)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++ ++.+|..+|.+++|+++|. .++|+|.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 5889999999999999 999999999999999999987 66666 8999999999999999999 699999999999
Q ss_pred EEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeee
Q 001248 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 493 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
+||+++|+++..+. -...+.++.|++++ .+.+++|+.|+.|+.||+++++.+..+..|.+.|..+.|-++|+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~------ 355 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR------ 355 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc------
Confidence 99999999999887 45677888988776 37899999999999999999999999999999999998888887
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~ 652 (1114)
++++.++|++++||+.+.+..+..+.... .....++..+|+++++++-+.|+.|.++.+....+
T Consensus 356 ---------------rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 356 ---------------RFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred ---------------eEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 69999999999999999887776554332 23578999999999999999999999997543311
Q ss_pred c--eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 653 L--LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 653 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
. .+.+++|.
T Consensus 420 ~nkkK~feGh~--------------------------------------------------------------------- 430 (503)
T KOG0282|consen 420 LNKKKRFEGHS--------------------------------------------------------------------- 430 (503)
T ss_pred cCHhhhhccee---------------------------------------------------------------------
Confidence 0 01111100
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
T Consensus 431 -------------------------------------------------------------------------------- 430 (503)
T KOG0282|consen 431 -------------------------------------------------------------------------------- 430 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
-.+--..+.|||||.+|++|+ ||.+.+||.++-+.+..++.|...++.+.|+|.....+|+++.||.|++||
T Consensus 431 ------vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 431 ------VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ------ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 122234678999999999998 999999999999999999999999999999998788999999999999996
No 53
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-31 Score=245.30 Aligned_cols=252 Identities=18% Similarity=0.249 Sum_probs=218.4
Q ss_pred CCcceeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeE
Q 001248 347 LPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1114)
Q Consensus 347 ~~~~~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1114)
+|.+-.+.+. |.++|.++.|+-||+| .+|++.|.+|++|++..|..++ .+.+|...|..
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~lik-------------------tYsghG~EVlD 64 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIK-------------------TYSGHGHEVLD 64 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceee-------------------eecCCCceeee
Confidence 4554556665 9999999999999997 7788889999999999999887 48899999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC--Cccee
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQY 503 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~--~~~~~ 503 (1114)
++.+.|...+++|+.|+.+.+||+.+|+..+ .+.+|.+.|+.++|+.+.. ++++|+.|.++++||.++ .++++
T Consensus 65 ~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 65 AALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccc
Confidence 9999999999999999999999999999887 7999999999999999988 899999999999999875 46788
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
.+......|.++.+.. ..+++|+.||+++.||++.+.....+- +. ++++++|+
T Consensus 140 ildea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy~--g~---------------------pit~vs~s 192 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDYF--GH---------------------PITSVSFS 192 (307)
T ss_pred hhhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhhc--CC---------------------cceeEEec
Confidence 8888889999998643 579999999999999998755433222 22 45555556
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++++..++++-|+++++.|-.+|+.+..+++|.....-..++++.....+++|++||.+.+||+.+.
T Consensus 193 ~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 193 KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred CCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence 6666899999999999999999999999998877655567888888899999999999999999887
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.8e-31 Score=299.46 Aligned_cols=289 Identities=27% Similarity=0.425 Sum_probs=245.2
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
+...|.++.|+++|+.+++++.++.+++|+..... + ..... + .+|...|..++|+||
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~----~~~~~-l--~~h~~~v~~~~fs~d 214 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S----NLLRE-L--SGHTRGVSDVAFSPD 214 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c----hhhcc-c--cccccceeeeEECCC
Confidence 46789999999999999999999999999863211 0 01111 1 249999999999999
Q ss_pred CCEEEEEe-CCeEEEEEc-CCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE
Q 001248 830 DSYVMSAS-GGKISLFNM-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1114)
++++++++ |++|+|||+ ..+..++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus 215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~ 293 (456)
T KOG0266|consen 215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG 293 (456)
T ss_pred CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence 99999999 899999999 56688999999999999999999 7799999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCcee
Q 001248 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV 986 (1114)
Q Consensus 908 l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~ 986 (1114)
++|++|+++|++++.|+.|+|||+.++... +.....++.... .++.+.|+|++++++++ .|+.+++||+..+.++
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence 999999999999999999999999996643 344455555433 68999999999999995 7779999999999999
Q ss_pred eeeecCCCCc---CeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeE
Q 001248 987 KQWVPRESSA---PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1063 (1114)
Q Consensus 987 ~~~~~~~h~~---~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1063 (1114)
..+. +|.. .+.+..++++++++++|+.|+.|++||+.++..++++. +|....+. .+.++| ..+++
T Consensus 370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~--~~~~~~-~~~~~ 437 (456)
T KOG0266|consen 370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVS--DLSSHP-TENLI 437 (456)
T ss_pred eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCcee--ccccCC-CcCee
Confidence 9887 4443 55666778999999999999999999999999998887 43222233 788888 47889
Q ss_pred EEEe--CCCcEEEEecc
Q 001248 1064 ALGL--SDGGVHVFEPL 1078 (1114)
Q Consensus 1064 ~s~~--~Dg~v~vW~i~ 1078 (1114)
++++ .|+.+++|...
T Consensus 438 ~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 438 ASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eecCcCCCceEEEecCC
Confidence 9888 79999999864
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.5e-32 Score=266.81 Aligned_cols=232 Identities=21% Similarity=0.360 Sum_probs=203.9
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
..+.|.|+.+..+ .+++|..|++|.|||.++-+.+. .+.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence 4578999999643 48999999999999998877665 58999999999999 577999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc---eeEeeccccCEE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVY 513 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~ 513 (1114)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+. . +++|++.|.++.+||+..... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~n--g--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSN--G--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeC--C--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999887 7889999999999984 3 799999999999999987653 357789999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
.+.|.. +++++++.|++|++|++.+.+.+.++.+|...|.++.+. ++++++|+
T Consensus 325 vVdfd~----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr-----------------------~rlvVSGS 377 (499)
T KOG0281|consen 325 VVDFDD----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSGS 377 (499)
T ss_pred eecccc----ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc-----------------------CeEEEecC
Confidence 998632 699999999999999999999999999998877776552 34789999
Q ss_pred CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.|.+|++||+..|.++..+.+|.. -|.++.| |.+.+++|..||+|++||+..+
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHH--hhhheee--cCceeeeccccceEEEEecccc
Confidence 999999999999999999998754 6899999 4678999999999999998776
No 56
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2.1e-30 Score=295.37 Aligned_cols=256 Identities=21% Similarity=0.375 Sum_probs=213.5
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcc--eeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
|...|.|+.|||+|++ +++++.|+.+++|+..+++ ... .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 4889999999999996 9999999999999997665 222 35899999999999999999
Q ss_pred EEEEeCCCeEEEEEc-cCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEE
Q 001248 435 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1114)
Q Consensus 435 las~~~dg~i~iwd~-~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1114)
+++++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445555 7889999999999999996 899999999999999999999999999999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCC--eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
+++|. +++.+|++++.|+.|++||+.++.. ...+..+... . .+..+.|+|++.++++
T Consensus 293 ~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------------------~-~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 293 GLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------------------A-PVTSVQFSPNGKYLLS 351 (456)
T ss_pred EEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC------------------C-ceeEEEECCCCcEEEE
Confidence 99974 5668999999999999999998763 2333322221 0 3445555556668999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCC-CCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccc
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 659 (1114)
++.|+.+++||+..+.....+..+... ..+.+...++.+.++++|+.|+.|.+|+..++ ..+..+.+
T Consensus 352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~ 419 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG 419 (456)
T ss_pred ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence 999999999999999999998877653 23445556789999999999999999999886 44444443
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.2e-30 Score=238.50 Aligned_cols=213 Identities=21% Similarity=0.336 Sum_probs=185.8
Q ss_pred ccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 414 ~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
.++..|+++|.++.|+-||+|.++++.|++|++|+...|..++ +..+|...|..++.+.|+. .+++|+.|+.+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v 85 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV 85 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence 3678999999999999999999999999999999999998887 8999999999999999998 6999999999999
Q ss_pred EeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC--CCeeeecCCCCeeEEEEEecCCCeEEee
Q 001248 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
||+.+|+.++.+.+|.+.|+.+.|+.. ...+++|+.|.++++||.++. ++++.+......|.++.+..
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNee--sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-------- 155 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEE--SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-------- 155 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCc--ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--------
Confidence 999999999999999999999998654 479999999999999999864 44555555566666665543
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
..+++|+.||+++.||++.|+.....-++ +|++++|++|++..++++-|+++++.|-.+|
T Consensus 156 ---------------heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~tG- 215 (307)
T KOG0316|consen 156 ---------------HEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKETG- 215 (307)
T ss_pred ---------------cEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccchh-
Confidence 35999999999999999999877665533 7999999999999999999999999999998
Q ss_pred cceeeccccc
Q 001248 652 RLLRTFENLA 661 (1114)
Q Consensus 652 ~~~~~~~~~~ 661 (1114)
++++.+.+|.
T Consensus 216 klL~sYkGhk 225 (307)
T KOG0316|consen 216 KLLKSYKGHK 225 (307)
T ss_pred HHHHHhcccc
Confidence 6666665543
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=5.9e-31 Score=269.90 Aligned_cols=291 Identities=19% Similarity=0.366 Sum_probs=244.9
Q ss_pred CcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC-CCCeeeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 499 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 499 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
.+.+.++.||...|+++.|.+. .+.+|++++.|+.|++|++.. .+++.++.+|..+|..++|+.+|.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~----------- 271 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT----------- 271 (503)
T ss_pred HhheeeccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-----------
Confidence 3557789999999999999764 458999999999999999987 677778899998888888888876
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCC-CEEEEEeCCCcEEEEEccCCccceee
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRT 656 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 656 (1114)
.+++++.|+.|++||.++|+++..+.... .+.|+.|.||+ +.+++|+.|+.|+.||++++ +.++.
T Consensus 272 ----------~fLS~sfD~~lKlwDtETG~~~~~f~~~~---~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvqe 337 (503)
T KOG0282|consen 272 ----------SFLSASFDRFLKLWDTETGQVLSRFHLDK---VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQE 337 (503)
T ss_pred ----------eeeeeecceeeeeeccccceEEEEEecCC---CceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHHH
Confidence 69999999999999999999999997543 47899999988 89999999999999999998 44433
Q ss_pred ccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCC
Q 001248 657 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 736 (1114)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~ 736 (1114)
+.
T Consensus 338 Yd------------------------------------------------------------------------------ 339 (503)
T KOG0282|consen 338 YD------------------------------------------------------------------------------ 339 (503)
T ss_pred HH------------------------------------------------------------------------------
Confidence 32
Q ss_pred CccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCC
Q 001248 737 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 816 (1114)
Q Consensus 737 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~ 816 (1114)
.|.+.|..+.|-++|++++++++|+.++||++... ..+..... .
T Consensus 340 ------------~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~----------------------v~ik~i~~--~ 383 (503)
T KOG0282|consen 340 ------------RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP----------------------VPIKNIAD--P 383 (503)
T ss_pred ------------hhhhheeeeEEccCCceEeeeccCccEEEEEcCCC----------------------ccchhhcc--h
Confidence 16678899999999999999999999999987632 11211111 1
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCC---ccccccCCCC--CCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF---KTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~---~~~~~~~~~~--~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
+.....++..+|++++++.-+ |+.|.+|.+... .....+.+|. +.-..+.||| ||.+|++|+.||.+.+||..
T Consensus 384 ~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp-DG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 384 EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP-DGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC-CCCeEEeecCCccEEEeech
Confidence 445577899999999999999 999999987532 2334567774 4577899999 99999999999999999999
Q ss_pred cceEEEeecccccCeeEEEEcCC-CCEEEEEeCCCcEEEEe
Q 001248 891 VDEVKSKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d-~~~l~s~s~D~~v~iwd 930 (1114)
+-+++..+++|...+..+.|+|. ...+|+|+.||.|++|+
T Consensus 463 t~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 463 TTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999999999999996 46799999999999996
No 59
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=9.8e-29 Score=259.65 Aligned_cols=625 Identities=14% Similarity=0.184 Sum_probs=342.6
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
+-.+-.|.+.|+.+.|||-...||||++.|..|+||.+..|-... ..-....+.+..-.|.|+.|+|
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHp 138 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHP 138 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeeccc
Confidence 334445999999999999877799999999999999998543221 1112223455556889999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC-CCcceeEeeccc
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHE 509 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~ 509 (1114)
...-|...+..|+++|||+.+++... ++.+|...|.++.|+.||+ ++++++.|+.|+|||.+ .++.+++..+|.
T Consensus 139 TaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~ 213 (1012)
T KOG1445|consen 139 TADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHG 213 (1012)
T ss_pred CcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccccc
Confidence 66666666678999999999988665 7999999999999999999 89999999999999987 467788888887
Q ss_pred cCE-EEEeeccCCCceEEEEEecC----CeEEEEEcCCCCCe-eeecCC-CCeeEEEEEecCCCeE-EeeecccceeEEE
Q 001248 510 APV-YSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSR-VDYEAP-GRWCTTMAYSADGTRT-YQGFRKRSLGVVQ 581 (1114)
Q Consensus 510 ~~v-~~~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~-~~~~~~-~~~v~~~~~s~~g~~~-~~~~~~~~v~~~~ 581 (1114)
+.- .-+.| .++-..|++.+.+ ..|++||.+..... .++... ...|.--.+.||.+.+ +.|.....+.++.
T Consensus 214 ~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE 291 (1012)
T KOG1445|consen 214 GMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLE 291 (1012)
T ss_pred cchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEE
Confidence 542 22344 3333466666654 56899998865432 222221 1223333455665533 2333344444444
Q ss_pred ecCCCCEEEEE--------------eCCCeE--------EEEECCCcceEEE--------e-ccC---------------
Q 001248 582 FDTTKNRFLAA--------------GDDFSI--------KFWDMDSVQLLTS--------I-DAD--------------- 615 (1114)
Q Consensus 582 ~~~~~~~l~~~--------------~~dg~i--------~iwd~~~~~~~~~--------~-~~~--------------- 615 (1114)
+.+...+|.-+ .-...+ +++.+.....+.. + ..|
T Consensus 292 ~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ 371 (1012)
T KOG1445|consen 292 MQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCT 371 (1012)
T ss_pred ecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcC
Confidence 43332221110 000011 1111111100000 0 000
Q ss_pred ------CCCCCcCeEEEcCCCC-------------EEE-EEeCCCcEEEEEc-----------------cC--------C
Q 001248 616 ------GGLPASPRIRFNKDGC-------------LLA-VSTNDNGIKILAT-----------------SD--------G 650 (1114)
Q Consensus 616 ------~~~~~v~~~~~s~d~~-------------~l~-~~~~dg~i~iwd~-----------------~~--------~ 650 (1114)
+....+..++..|..+ ..+ +++ .+.+.-. .+ .
T Consensus 372 ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~s---f~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~ 448 (1012)
T KOG1445|consen 372 AGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPS---FVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPK 448 (1012)
T ss_pred ccceecCccccccccccCchhccCCCCCCCCCCCcccccCCC---CccccCCCCCCCccccccccccCCCccccCCCcCc
Confidence 0000111222221000 000 000 0000000 00 0
Q ss_pred ccceeec---------------------cccccccccCCCCCCCCccchhhhhhh-----hccccccccccccccccCCC
Q 001248 651 IRLLRTF---------------------ENLAYDASRTSENSKPTISPISAAAAA-----AATSAGLADRAASMVSIPGM 704 (1114)
Q Consensus 651 ~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 704 (1114)
+...+.+ ++....+..+...+.....+.+..... +.+.+... +..+-..-.++
T Consensus 449 ~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~-ksvPe~~~~~~ 527 (1012)
T KOG1445|consen 449 KEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFG-KSVPEQPPVNF 527 (1012)
T ss_pred chhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCcccc-ccCCCCCCccc
Confidence 0000000 000010000000000000000000000 00000000 00000000000
Q ss_pred CCCccccCCCcccccccC------CCceeEEEeccCCCCcccccc-ccCccccccceEEEEEccCcceeee--cccCceE
Q 001248 705 NGDVRSLADVKPRITEES------NDKSKVWKLTELSEPNQCRSL-RLPENLRATKISRLIFTNSGNAILA--LASNAIH 775 (1114)
Q Consensus 705 ~~~~~~~~~~~~l~~~~~------d~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~s~~~~~l~~--~~~dg~i 775 (1114)
.... ........+.+. =|.+.-|.--.+....+-..+ .+.+-...-+-.+--|+.+..++++ .+..|.|
T Consensus 528 g~~~--sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~i 605 (1012)
T KOG1445|consen 528 GKPI--SATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVI 605 (1012)
T ss_pred CCCc--cccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceE
Confidence 0000 000000000000 011111111111100000000 0000000000011123334444443 5567999
Q ss_pred EEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee-CCCEEEEEe-CCeEEEEEcCCCcc--
Q 001248 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKT-- 851 (1114)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~-dg~i~iwd~~~~~~-- 851 (1114)
-||+++.....+++... +......|+.+.|.| |...||+++ ||.|++|.+..+..
T Consensus 606 ai~el~~PGrLPDgv~p---------------------~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 606 AIYELNEPGRLPDGVMP---------------------GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred EEEEcCCCCCCCccccc---------------------ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 99999876665555432 222566788899998 677888888 89999999875432
Q ss_pred -----ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcE
Q 001248 852 -----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 926 (1114)
Q Consensus 852 -----~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v 926 (1114)
-..+..|...|+++.|+|-..+.||+++.|-+|++||+.+++....+.+|.+.|.+++|||||+.+|+.+.||+|
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~ 744 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTL 744 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceE
Confidence 345678999999999999778899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeC----CeEEEEEcCCCce--eeeeecCCCCcCee
Q 001248 927 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE----TQLAIFETTKLEC--VKQWVPRESSAPIT 999 (1114)
Q Consensus 927 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d----~~i~iwd~~~~~~--~~~~~~~~h~~~v~ 999 (1114)
++|+-.+++.. +....+ +....--.+.|.-||+++++ +.| .+|.+||..+... +.+...+. .-.+.
T Consensus 745 rVy~Prs~e~p----v~Eg~g--pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-aps~L 817 (1012)
T KOG1445|consen 745 RVYEPRSREQP----VYEGKG--PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-APSPL 817 (1012)
T ss_pred EEeCCCCCCCc----cccCCC--CccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-cCccc
Confidence 99999886532 222222 21133467899999999988 544 5799999876542 22221111 11122
Q ss_pred EEEECCCCCE-EEEEEcCCeEEEEEcCCCee
Q 001248 1000 HATFSCDSQL-VYACFLDATVCVFSAANLKL 1029 (1114)
Q Consensus 1000 ~l~~s~dg~~-l~s~s~Dg~I~vwd~~~~~~ 1029 (1114)
--.+.+|... +++|-.|..|..|.+...+.
T Consensus 818 vP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 818 VPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred cccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 2234556665 56788899999999866554
No 60
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.2e-30 Score=244.17 Aligned_cols=289 Identities=17% Similarity=0.281 Sum_probs=243.4
Q ss_pred cccCCCCCeeEEEEcC---CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 415 LVKDPGVSVNRVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~sp---dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ++.||.+.|+......+.. ..++++.|-+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta 83 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA 83 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence 4689999999999997 89999999999999888888988777 8999999999999988877 68999999999
Q ss_pred EEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee
Q 001248 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
++||.-+|..+.+|. |..-|.+++|+. |.++|++|+.++.++++|++..+.
T Consensus 84 kvw~a~tgdelhsf~-hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~A-------------------------- 134 (334)
T KOG0278|consen 84 KVWDAVTGDELHSFE-HKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKA-------------------------- 134 (334)
T ss_pred hhhhhhhhhhhhhhh-hhheeeeEEecc--cchhhhccchHHHhhhhhccCCCC--------------------------
Confidence 999999999999997 888999999754 446788888888777777754321
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
+...+. ++...|..+.|....+.+++.+.|++||+||.+++.
T Consensus 135 ------------------------------------pp~E~~--ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt 176 (334)
T KOG0278|consen 135 ------------------------------------PPKEIS--GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT 176 (334)
T ss_pred ------------------------------------Cchhhc--CCCCcceeEEEeccCceEEeeccCCceEEEEeccCc
Confidence 112222 234467888888888888888999999999998882
Q ss_pred cceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEe
Q 001248 652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1114)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1114)
.++.+
T Consensus 177 -~v~sL-------------------------------------------------------------------------- 181 (334)
T KOG0278|consen 177 -EVQSL-------------------------------------------------------------------------- 181 (334)
T ss_pred -EEEEE--------------------------------------------------------------------------
Confidence 22111
Q ss_pred ccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccccc
Q 001248 732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 811 (1114)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 811 (1114)
.
T Consensus 182 --------------------------~----------------------------------------------------- 182 (334)
T KOG0278|consen 182 --------------------------E----------------------------------------------------- 182 (334)
T ss_pred --------------------------e-----------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 812 VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 812 ~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
....|+++.+++||++|.++..+.|.+||..+...++.+. -+..|.+..++| +..++++|++|+.++.||+.+
T Consensus 183 -----~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~T 255 (334)
T KOG0278|consen 183 -----FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNT 255 (334)
T ss_pred -----cCCCCcceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccC-CCceEEecCcceEEEEEeccC
Confidence 3456788889999999999989999999999999888876 345699999999 778999999999999999999
Q ss_pred ceEEEee-cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001248 892 DEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 936 (1114)
Q Consensus 892 ~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~ 936 (1114)
|+.+..+ ++|.++|-||.|+|||...|+||+||+|++|.+..++.
T Consensus 256 geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 256 GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 9998886 99999999999999999999999999999999876543
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.8e-28 Score=302.46 Aligned_cols=310 Identities=15% Similarity=0.219 Sum_probs=222.7
Q ss_pred CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCC----cee
Q 001248 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEV 455 (1114)
Q Consensus 380 dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~----~~~ 455 (1114)
+|.+++|+..+.+..... ....+..|.+.|.+++|+|+|++||+|+.|+.|+|||.... ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 677888888765443210 11124569999999999999999999999999999997642 111
Q ss_pred e-eeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCe
Q 001248 456 R-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 534 (1114)
Q Consensus 456 ~-~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 534 (1114)
. ....+. +...|.+++|++.... +|++++.|++|++||+.+++.+..+.+|.+.|++++|++. ++.+|++|+.|++
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 112233 3467999999986443 7999999999999999999999999999999999998753 3457777777777
Q ss_pred EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q 001248 535 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 535 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
|++||+++ +..+..+..
T Consensus 600 v~iWd~~~---------------------------------------------------------------~~~~~~~~~ 616 (793)
T PLN00181 600 VKLWSINQ---------------------------------------------------------------GVSIGTIKT 616 (793)
T ss_pred EEEEECCC---------------------------------------------------------------CcEEEEEec
Confidence 77776643 222223322
Q ss_pred CCCCCCcCeEEEc-CCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccc
Q 001248 615 DGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 693 (1114)
Q Consensus 615 ~~~~~~v~~~~~s-~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1114)
+ ..+.++.|+ ++|.+|++|+.||.|++||+.+.......+.
T Consensus 617 ~---~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~----------------------------------- 658 (793)
T PLN00181 617 K---ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI----------------------------------- 658 (793)
T ss_pred C---CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-----------------------------------
Confidence 2 236778884 5799999999999999999865421111110
Q ss_pred ccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCc
Q 001248 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 773 (1114)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 773 (1114)
+
T Consensus 659 -------------------------------------------------------~------------------------ 659 (793)
T PLN00181 659 -------------------------------------------------------G------------------------ 659 (793)
T ss_pred -------------------------------------------------------C------------------------
Confidence 1
Q ss_pred eEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC----
Q 001248 774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT---- 848 (1114)
Q Consensus 774 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~---- 848 (1114)
|...|.++.|. ++.+|++++ |++|++||+..
T Consensus 660 -------------------------------------------h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 660 -------------------------------------------HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred -------------------------------------------CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 33344444443 344455554 55555555542
Q ss_pred --CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe-------------ecccccCeeEEEEcCC
Q 001248 849 --FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-------------LKGHSKRITGLAFSHA 913 (1114)
Q Consensus 849 --~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~-------------l~~h~~~V~~l~~s~d 913 (1114)
...+..+.+|...+.+++|+| ++.+||+|+.||.|++|+......+.. ...|...|.+++|+++
T Consensus 696 ~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 245667788999999999999 889999999999999999765433221 2335667999999999
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 001248 914 LNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 914 ~~~l~s~s~D~~v~iwd~ 931 (1114)
+..|++|+.||+|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=7.4e-31 Score=256.57 Aligned_cols=234 Identities=17% Similarity=0.285 Sum_probs=208.0
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
....|+|+.+ |...+++|. |++|+|||..+..+.+.+.+|.+.|.|+.|. .+.|++|++|.+|+|||+++|+++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchh
Confidence 4567888887 667899998 9999999999999999999999999999995 569999999999999999999999
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCe
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQ 974 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~ 974 (1114)
.++-+|...|..+.|+ +.++++++.|.++.+||+.+.. ...+...+.||.. +|..+.|+. +|+++ ++|.+
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps--~it~rrVLvGHrA---aVNvVdfd~--kyIVsASgDRT 341 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT--DITLRRVLVGHRA---AVNVVDFDD--KYIVSASGDRT 341 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCch--HHHHHHHHhhhhh---heeeecccc--ceEEEecCCce
Confidence 9999999999999997 5699999999999999999854 3456677778874 788888854 58888 69999
Q ss_pred EEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEE
Q 001248 975 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1054 (1114)
Q Consensus 975 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1054 (1114)
|++|++.++++++++. +|...|.|+.+ .|+++++|+.|.+|++||+..|.++..++ ||+.- |. ++.
T Consensus 342 ikvW~~st~efvRtl~--gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLe-------GHEeL-vR--ciR 407 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLN--GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE-------GHEEL-VR--CIR 407 (499)
T ss_pred EEEEeccceeeehhhh--cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHh-------chHHh-hh--hee
Confidence 9999999999999986 89999999987 79999999999999999999999998888 55444 55 788
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1055 AHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1055 ~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
|. .+.+++|..||+|+|||+.++.
T Consensus 408 Fd---~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 408 FD---NKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred ec---CceeeeccccceEEEEeccccc
Confidence 85 5789999999999999999987
No 63
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.3e-29 Score=238.25 Aligned_cols=294 Identities=18% Similarity=0.287 Sum_probs=230.2
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.++||+.+++.+.++.+|.+|.+++.|.++.||--.+|+.+. ++.||.+.|+|++..-+.+ +++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 588999999999999999999999999999999998998777 8999999999999999999 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-----CCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEE
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-----DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
|+++|+++.+++ ...+|..+.|++.. ++++.... .+.|.++|++....
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~------------------------ 132 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSS------------------------ 132 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChh------------------------
Confidence 999999999988 56788888876654 44444332 23344444432100
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
+....++...+..+. ..++.+-|+|-+++|++|..||.|.+||.++
T Consensus 133 --------------------------------~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 133 --------------------------------DIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDART 178 (327)
T ss_pred --------------------------------hhcccCceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence 111334455554443 4688999999999999999999999999988
Q ss_pred CccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEE
Q 001248 650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 729 (1114)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 729 (1114)
+++.+...+
T Consensus 179 g~~~v~s~~----------------------------------------------------------------------- 187 (327)
T KOG0643|consen 179 GKELVDSDE----------------------------------------------------------------------- 187 (327)
T ss_pred Cceeeechh-----------------------------------------------------------------------
Confidence 843322110
Q ss_pred EeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccc
Q 001248 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809 (1114)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 809 (1114)
T Consensus 188 -------------------------------------------------------------------------------- 187 (327)
T KOG0643|consen 188 -------------------------------------------------------------------------------- 187 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEE-eCCC-----
Q 001248 810 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDS----- 882 (1114)
Q Consensus 810 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g-~~dg----- 882 (1114)
.|...|+.+.+++|..++++++ |.+-++||..+.++++++. ...+|.+.+++| -..+++.| +.+.
T Consensus 188 ------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP-~~d~VilgGGqeA~dVTT 259 (327)
T KOG0643|consen 188 ------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISP-LLDHVILGGGQEAMDVTT 259 (327)
T ss_pred ------hhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceeccc-ccceEEecCCceeeeeee
Confidence 1666778888888888999998 8899999999999888887 456899999999 44444444 3331
Q ss_pred --------cEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 883 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 883 --------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
.-+.|++-..+.+..+++|-++|++|+|+|||+..+||++||.|++.-.+.
T Consensus 260 T~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 260 TSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 123344444456778899999999999999999999999999999987665
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.4e-28 Score=266.09 Aligned_cols=285 Identities=28% Similarity=0.473 Sum_probs=239.8
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 539 (1114)
++.+|..+|.+++|+|+++ ++++++.|+.|++||+.+++....+..|...+..+.|.+. ++++++++.|+.|++||
T Consensus 4 ~~~~h~~~i~~~~~~~~~~--~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGK--LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD--GTYLASGSSDKTIRLWD 79 (289)
T ss_pred HhcccCCCEEEEEEcCCCC--EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCC--CCEEEEEcCCCeEEEEE
Confidence 5678999999999999998 7899999999999999999888899999999988887654 47899999999999999
Q ss_pred cCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCC
Q 001248 540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP 619 (1114)
Q Consensus 540 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 619 (1114)
+...+....+..+...+.++.+++++ +++++++.++.|++||+.+++....+..+ ..
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~ 136 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDG---------------------RILSSSSRDKTIKVWDVETGKCLTTLRGH--TD 136 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCCC---------------------CEEEEecCCCeEEEEECCCcEEEEEeccC--CC
Confidence 99876666666555556666655554 46777777999999999988888888754 34
Q ss_pred CcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccccccc
Q 001248 620 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 699 (1114)
Q Consensus 620 ~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (1114)
.+.++.|+|++.++++++.++.|++||+.++. ....+.
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~----------------------------------------- 174 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLT----------------------------------------- 174 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEe-----------------------------------------
Confidence 78999999999999988889999999976441 110000
Q ss_pred ccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEe
Q 001248 700 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 779 (1114)
Q Consensus 700 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~ 779 (1114)
T Consensus 175 -------------------------------------------------------------------------------- 174 (289)
T cd00200 175 -------------------------------------------------------------------------------- 174 (289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCC
Q 001248 780 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP 858 (1114)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~ 858 (1114)
.|...+.+++++++++.+++++ ++.|++||+.+++.+..+..|
T Consensus 175 ------------------------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~ 218 (289)
T cd00200 175 ------------------------------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218 (289)
T ss_pred ------------------------------------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc
Confidence 0445677788888887777777 889999999888888888788
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 859 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 859 ~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
...+.+++|+| ++.++++++.||.|++||+.+++.+..+.+|...|.+++|++++++|++++.|+.+++|+
T Consensus 219 ~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 219 ENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 88999999999 788999888899999999999999999999999999999999999999999999999996
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.7e-30 Score=247.37 Aligned_cols=291 Identities=19% Similarity=0.291 Sum_probs=236.5
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....+.+..|+|||+++++++.||.|.||+..+++...+-+..+ ....+ . ++..|.|+.||.|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA---------qd~fM-M-------md~aVlci~FSRD 274 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA---------QDNFM-M-------MDDAVLCISFSRD 274 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh---------hccee-e-------cccceEEEeeccc
Confidence 45667899999999999999999999999877554332222111 11111 1 6789999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccccccC-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1114)
..++|+|+ ||.|++|.+.+|.+++.+. .|...|+|+.||. |+..+.+++.|.+++|.-+.+|+++..++||++.|+.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999999 9999999999999999986 8999999999999 8888999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC-CcEEEE-EeCCeEEEEEcCCCce
Q 001248 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFETTKLEC 985 (1114)
Q Consensus 908 l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd-g~~l~~-~~d~~i~iwd~~~~~~ 985 (1114)
..|++||..+++++.||+|++|+..+.++ +..+.... ...+|..+..-|. -..+++ -...++.|-++. |+.
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC-----~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQv 426 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTEC-----LSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQV 426 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhh-----hhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceE
Confidence 99999999999999999999999998554 33333221 1235667666663 444555 467788888885 777
Q ss_pred eeeeecCC-CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEE
Q 001248 986 VKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1064 (1114)
Q Consensus 986 ~~~~~~~~-h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~ 1064 (1114)
++++.... ..+...+.+.||.|.++++.+.|+.++.|.+.+|++...+..+... ++.++-+| ..+.|+
T Consensus 427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd----------vIGl~HHP-HqNllA 495 (508)
T KOG0275|consen 427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD----------VIGLTHHP-HQNLLA 495 (508)
T ss_pred EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc----------ccccccCc-ccchhh
Confidence 78776422 2556778889999999999999999999999999999888733322 33588888 468999
Q ss_pred EEeCCCcEEEEe
Q 001248 1065 LGLSDGGVHVFE 1076 (1114)
Q Consensus 1065 s~~~Dg~v~vW~ 1076 (1114)
+-++||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999996
No 66
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=3.9e-28 Score=265.64 Aligned_cols=245 Identities=27% Similarity=0.436 Sum_probs=208.8
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
+|.+.|++++|+|++++ +++|+.||.|.+|++.+++... .+..|...+.++.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCCE-EEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 59999999999999995 8889999999999999876544 356788899999999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEE
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1114)
++++.||.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++||+.+++....+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876554 5778998999999999977 78888889999999999999999999999999999
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.+++++ +.+++++.+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~l~~~~~~ 198 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG---------------------EKLLSSSSD 198 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc---------------------CEEEEecCC
Confidence 98765 4688888889999999998766666665555555555555554 468888889
Q ss_pred CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+.|++||+.+++.+..+..+. ..+.++.|++++.++++++.+|.|++|+..++
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEECCCCceecchhhcC--CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 999999999988888876543 37899999999999998888999999998765
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=3.2e-28 Score=300.21 Aligned_cols=297 Identities=11% Similarity=0.168 Sum_probs=231.2
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
.|...|.+++|+|+|+++++++.|+.|+||++...... +... ..... .+ .+...+.+++|++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~--~~~~------------~~~~~-~~---~~~~~v~~l~~~~ 542 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD--GRDI------------HYPVV-EL---ASRSKLSGICWNS 542 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc--cccc------------ccceE-Ee---cccCceeeEEecc
Confidence 37889999999999999999999999999997531100 0000 00000 01 1346788999987
Q ss_pred -CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee
Q 001248 829 -NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 829 -d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
++.+|++++ ||+|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.||.|++||+.++..+..+..| ..|.
T Consensus 543 ~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 543 YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 478899998 9999999999999999999999999999999757899999999999999999999888888755 6799
Q ss_pred EEEEc-CCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCC-
Q 001248 907 GLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKL- 983 (1114)
Q Consensus 907 ~l~~s-~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~- 983 (1114)
++.|+ +++.+|++|+.|++|++||+..... .+....+|. ..|..+.|. ++.+|++ +.|+.|++||+..+
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~----~~~~~~~h~---~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKL----PLCTMIGHS---KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCc----cceEecCCC---CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc
Confidence 99995 5799999999999999999986432 223334554 378999997 6677777 68999999999753
Q ss_pred -----ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcc--c---CCCCCCCCccceEE
Q 001248 984 -----ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY--L---PAGVSSSNVHPLVI 1053 (1114)
Q Consensus 984 -----~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~--~---~~~~~~~~v~~~~~ 1053 (1114)
..+..+. +|...+.+++|+|++.+|++|+.|+.|++|+......+..+..... . ...+....|. ++
T Consensus 694 ~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~--~v 769 (793)
T PLN00181 694 SGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFIS--SV 769 (793)
T ss_pred cccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEE--EE
Confidence 4455554 8899999999999999999999999999999887765543321100 0 0011122244 89
Q ss_pred EecCCCCCeEEEEeCCCcEEEEec
Q 001248 1054 AAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1054 ~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
+|+| ++.+|++|+.||+|++|++
T Consensus 770 ~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 770 CWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcC-CCCeEEEecCCCcEEEEec
Confidence 9999 6899999999999999986
No 68
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=4.6e-27 Score=247.19 Aligned_cols=626 Identities=16% Similarity=0.187 Sum_probs=346.8
Q ss_pred cccCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEccCCceee---eeEeeccccCCeeEEEecCCCCeeEEEEecCCCC
Q 001248 415 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVR---QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 490 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~---~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~ 490 (1114)
++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|.... ....+.+..-.|.++.|.|.... ++++ +..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s-~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILAS-GAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEe-ccCce
Confidence 5889999999999999 77899999999999999998543221 11234444557899999998775 3444 45789
Q ss_pred EEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEE
Q 001248 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
++|||+.+++.+..+.+|...|.++.|+ .||.+|++.+.|+.|++||.+... .+.....|++. .|.+
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Ws--eDG~llatscKdkqirifDPRa~~~piQ~te~H~~~-------rdsR--- 219 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWS--EDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGM-------RDSR--- 219 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccc--cCCceEeeecCCcceEEeCCccCCCccccccccccc-------hhhe---
Confidence 9999999999999999999999999985 577999999999999999998753 33344444331 1111
Q ss_pred eeecccceeEEEecCCCCEEEEEe----CCCeEEEEECCC-cceEEEeccCCCCCCcCeEEEcCCCCEEEEE-eCCCcEE
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIK 643 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~dg~i~ 643 (1114)
+.|-.+-.+|++.+ .-..|++||.+. +..+.++..... ..|.---|.||.++|+.+ -.+.++.
T Consensus 220 ----------v~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~s-tGvLiPl~DpDt~llfLaGKG~~~l~ 288 (1012)
T KOG1445|consen 220 ----------VLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSS-TGVLIPLYDPDTRLLFLAGKGTNKLF 288 (1012)
T ss_pred ----------eeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecc-cceEeeeecCCCceEEEecCCcceEE
Confidence 22222223455544 356799999765 445566554432 235556688888776654 4567788
Q ss_pred EEEccCCccceee-----------------------ccccccccccCCCCCCCCccchhhh-------hhhhcccccccc
Q 001248 644 ILATSDGIRLLRT-----------------------FENLAYDASRTSENSKPTISPISAA-------AAAAATSAGLAD 693 (1114)
Q Consensus 644 iwd~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 693 (1114)
.+.+...+..+.. +.+....+.+.... .+-+.... .-.+.+.+...+
T Consensus 289 ~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~---~ivPi~y~VPRksyrdFH~DLfPeT~G 365 (1012)
T KOG1445|consen 289 MLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKS---SIVPIPYIVPRKSYRDFHSDLFPETRG 365 (1012)
T ss_pred EEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccC---ceeecccccchhhhhhhhhhhCccccC
Confidence 8877654222111 11111111110000 01110000 000111111111
Q ss_pred ccccccccCCCCCCcccc--------------------CCCcccccccCCCceeEEEecc------------CCCCcccc
Q 001248 694 RAASMVSIPGMNGDVRSL--------------------ADVKPRITEESNDKSKVWKLTE------------LSEPNQCR 741 (1114)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~d~~i~iw~~~~------------~~~~~~~~ 741 (1114)
......+...+++..... +....--+++.+ .+.-... ...+....
T Consensus 366 ~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~---~v~~ppaaP~~~~n~~~~~~~~Pd~~~ 442 (1012)
T KOG1445|consen 366 AEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFV---PVPTPPAAPRPMSNNNSSSNNVPDVQE 442 (1012)
T ss_pred CccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCc---cccCCCCCCCccccccccccCCCcccc
Confidence 111111111111111000 000000000000 0000000 00000000
Q ss_pred ccccCccccccceEEEEEcc----Cc------c---------eeeecccCc----------------eEEEEeecccccC
Q 001248 742 SLRLPENLRATKISRLIFTN----SG------N---------AILALASNA----------------IHLLWKWQRTERN 786 (1114)
Q Consensus 742 ~~~~~~~~~~~~i~~l~~s~----~~------~---------~l~~~~~dg----------------~i~vw~~~~~~~~ 786 (1114)
.-..+ ....+..+.+-| +| . .+-+.+... +..+-....++.-
T Consensus 443 qpaV~---~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksv 519 (1012)
T KOG1445|consen 443 QPAVP---KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSV 519 (1012)
T ss_pred CCCcC---cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccC
Confidence 00000 000011111100 00 0 000000000 0000000000000
Q ss_pred C----C--CCcc-cc------cccc----c------cCCCCCccccc-----cCCCCCCCCCccEEEEeeCCCEEEEE--
Q 001248 787 S----S--GKAT-AS------VAPQ----L------WQPPSGIMMTN-----DVTDSNPEEAVPCFALSKNDSYVMSA-- 836 (1114)
Q Consensus 787 ~----~--~~~~-~~------~~~~----~------w~~~~g~~~~~-----~~~~~~~~~~v~~v~~s~d~~~l~~~-- 836 (1114)
+ . +..+ ++ ..++ + +.-..|..... .+.+....-+-.+=-|..+.+++|+-
T Consensus 520 Pe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~ 599 (1012)
T KOG1445|consen 520 PEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLA 599 (1012)
T ss_pred CCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEec
Confidence 0 0 0000 00 0000 0 00000100000 00000011112222344566677753
Q ss_pred -eCCeEEEEEcCCCc-cccc-cCC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-------eEEEeecccccC
Q 001248 837 -SGGKISLFNMMTFK-TMAT-FMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-------EVKSKLKGHSKR 904 (1114)
Q Consensus 837 -~dg~i~iwd~~~~~-~~~~-~~~--~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~-------~~~~~l~~h~~~ 904 (1114)
+.|.|.||++.... ..-. +.+ ....|+.+.|.|.|...||++++||.|++|.+..+ ..-..+.+|...
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 37899999997532 2211 111 24569999999999999999999999999999764 344678899999
Q ss_pred eeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001248 905 ITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 982 (1114)
Q Consensus 905 V~~l~~s~d-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~ 982 (1114)
|+++.|+|- ...|++++.|.+|++||+.+.+ ....+.+|. +.|..++|||||+.+|+ +.||+|++|+.++
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCc---CceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 999999984 4689999999999999999854 344566776 48999999999999999 8999999999988
Q ss_pred CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC----eEEEEEcCCCe--eeEEeCCCcccCCCCCCCCccceEEEec
Q 001248 983 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAANLK--LRCRINPSAYLPAGVSSSNVHPLVIAAH 1056 (1114)
Q Consensus 983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg----~I~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1056 (1114)
++..-.-....-...-..+.|.-||+++++.+.|. .|.+||..+.. .+.+.. +... -.++--.|.
T Consensus 752 ~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~----lDva-----ps~LvP~YD 822 (1012)
T KOG1445|consen 752 REQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV----LDVA-----PSPLVPHYD 822 (1012)
T ss_pred CCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee----eccc-----Ccccccccc
Confidence 76532211111133445678888999988877664 58899987644 222211 1100 223344566
Q ss_pred CCCCCeEEEEeCCCcEEEEeccCCCCcccCCCCCC
Q 001248 1057 PQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVD 1091 (1114)
Q Consensus 1057 ~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~~~~~ 1091 (1114)
++.+-++++|-.|..|+++++-...+.+-.-.||.
T Consensus 823 ~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~ 857 (1012)
T KOG1445|consen 823 YDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFM 857 (1012)
T ss_pred CCCceEEEecCCCceEEEEEecCCCceeeeccccc
Confidence 65556788999999999999988775555445543
No 69
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=6.3e-29 Score=232.64 Aligned_cols=296 Identities=16% Similarity=0.259 Sum_probs=249.9
Q ss_pred CccccccceEEEEEc---cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCcc
Q 001248 746 PENLRATKISRLIFT---NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 822 (1114)
Q Consensus 746 ~~~~~~~~i~~l~~s---~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~ 822 (1114)
...+|..+|..++|+ |+|-+|++++.|+.-++ .+-.+|..+.. +. +|.+.|.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pml----------------------r~g~tgdwigt-fe--ghkgavw 63 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPML----------------------RNGDTGDWIGT-FE--GHKGAVW 63 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchh----------------------ccCCCCCcEEe-ee--ccCccee
Confidence 336799999999997 48999999999976543 34446665543 22 4999999
Q ss_pred EEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-eEEEeecc
Q 001248 823 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKG 900 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~ 900 (1114)
+.+++.|...-|+++ |=+-++||.-+|..+..+. |..-|.+++|+. |.++|++|+.+..+||||++.- ....++.+
T Consensus 64 ~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 64 SATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred eeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence 999999998888888 8899999999999999997 888999999999 8999999999999999999874 45678899
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEc
Q 001248 901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 980 (1114)
Q Consensus 901 h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~ 980 (1114)
|.+.|..+.|....+.++|.+.|++|++||..++...... ... ..|+++-+++||++|.++..+.|..||.
T Consensus 142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL--~~~-------s~VtSlEvs~dG~ilTia~gssV~Fwda 212 (334)
T KOG0278|consen 142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL--EFN-------SPVTSLEVSQDGRILTIAYGSSVKFWDA 212 (334)
T ss_pred CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE--ecC-------CCCcceeeccCCCEEEEecCceeEEecc
Confidence 9999999999998899999999999999999997643321 111 4689999999999999999999999999
Q ss_pred CCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCC
Q 001248 981 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1060 (1114)
Q Consensus 981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~ 1060 (1114)
.+...++.+.. ...|.+...+|+...+++|+.|..++.||+.+|+.+..+. .||.+. |. ++.|+| ||
T Consensus 213 ksf~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh~gp-Vh--cVrFSP-dG 279 (334)
T KOG0278|consen 213 KSFGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGHFGP-VH--CVRFSP-DG 279 (334)
T ss_pred ccccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCCCCc-eE--EEEECC-CC
Confidence 99999888765 5589999999999999999999999999999999997752 143333 55 899999 79
Q ss_pred CeEEEEeCCCcEEEEeccCCC--CcccCCCCC
Q 001248 1061 NEFALGLSDGGVHVFEPLESE--GKWGVPPPV 1090 (1114)
Q Consensus 1061 ~~l~s~~~Dg~v~vW~i~~~~--~~~~~~~~~ 1090 (1114)
...++||+||+|++|...-++ +.|.--.|-
T Consensus 280 E~yAsGSEDGTirlWQt~~~~~~~~~~~~~~e 311 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQTTPGKTYGLWKCVKPE 311 (334)
T ss_pred ceeeccCCCceEEEEEecCCCchhhccccChh
Confidence 999999999999999998887 455555554
No 70
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.6e-27 Score=229.94 Aligned_cols=268 Identities=15% Similarity=0.216 Sum_probs=198.0
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCC-CCcccccccccCCCCCeeEEEEcCCC
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGA-CSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
...|+.++.+.+|||||. |+|||+.|..|+|.|++..-... ....+..-.. ...|.. .++-.|.+.|+++.|+|..
T Consensus 108 lt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvI-RTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVI-RTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceE-eehhhccCcccceeecchh
Confidence 334999999999999999 69999999999999997321100 0000000000 011222 2577899999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe---eccc
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHE 509 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~h~ 509 (1114)
..|++|+.|++|+++|+......+....+ ....+|.++.|.|.|. +++.|..-.++++||+.+-++...- .+|.
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 99999999999999999865433333233 3456899999999999 7889999999999999998876543 4699
Q ss_pred cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC-CC-CeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PG-RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~-~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
+.|+++.++ +.+++.++++.||.|++||--+..++.++.. |+ ..|.+..|+.+| +
T Consensus 262 ~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~---------------------k 318 (430)
T KOG0640|consen 262 GAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG---------------------K 318 (430)
T ss_pred cceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC---------------------e
Confidence 999999864 5568999999999999999887777665532 22 245555555555 5
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCC---CCcCeEEEcCCCCEEEEEeC-CCcEEEEEccCC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTN-DNGIKILATSDG 650 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~~~~~-dg~i~iwd~~~~ 650 (1114)
++++.+.|..+++|.+.+++++..+.+-+.. ..-+...|+....+++.-.+ .+.+.-||.+++
T Consensus 319 yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 319 YILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred EEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence 8999999999999999999999998765322 22345566666666665443 456777887766
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.5e-27 Score=242.19 Aligned_cols=286 Identities=17% Similarity=0.269 Sum_probs=234.2
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....|.+++|+|...+=++....-.+.+|+... -..... +. .....++++.|-.|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~----------------------~~~~k~-~s--rFk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT----------------------RSVRKT-FS--RFKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecch----------------------hhhhhh-HH--hhccceeEEEeecC
Confidence 457899999999766555555555666665432 111111 11 15678999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEE
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 908 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 908 (1114)
|+++|+|. .|.|+|||+.+...++.+.+|..++..+.|+|.++.++++|++|+.+++||+.+......+.+|++.|.+.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 99999999 79999999888778899999999999999999999999999999999999999998877999999999999
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceee
Q 001248 909 AFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 987 (1114)
Q Consensus 909 ~~s~d~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~ 987 (1114)
+|+|-. ..++|||.||+|++||+.... ........+ .+|..+.|-|.|..+|+++...+++||+.+|....
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL 231 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence 999965 478999999999999998743 122223323 37899999999999999999999999999665443
Q ss_pred eeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe
Q 001248 988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
.... .|...|||+++..+++.|++|+-|+.|+|||+.+.+.+..+. .|.+ |. +++-+| |++.++.|.
T Consensus 232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~p-----vL--siavs~-dd~t~viGm 298 (487)
T KOG0310|consen 232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGP-----VL--SIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccc-----ee--eEEecC-CCceEEEec
Confidence 3332 489999999999999999999999999999999999999887 5544 44 788888 578999999
Q ss_pred CCCcEEEEeccCCC
Q 001248 1068 SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1068 ~Dg~v~vW~i~~~~ 1081 (1114)
.||.+.+=+...++
T Consensus 299 snGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 299 SNGLVSIRRREVKK 312 (487)
T ss_pred ccceeeeehhhccc
Confidence 99999887665544
No 72
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=4.4e-27 Score=234.09 Aligned_cols=258 Identities=16% Similarity=0.286 Sum_probs=204.6
Q ss_pred CcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEE
Q 001248 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1114)
Q Consensus 348 ~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1114)
|.+-...+-|.+.|.++... +++ +++|+.||.++|||.... ... .+.||.++|.+++
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~~-IltgsYDg~~riWd~~Gk-~~~-------------------~~~Ght~~ik~v~ 151 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SKW-ILTGSYDGTSRIWDLKGK-SIK-------------------TIVGHTGPIKSVA 151 (423)
T ss_pred CCCccccccchhhhhhhccc--Cce-EEEeecCCeeEEEecCCc-eEE-------------------EEecCCcceeeeE
Confidence 45555777899999999999 565 899999999999998754 333 4789999999888
Q ss_pred EcCC---CCeEEEEeCCCeEEEEEccCCceee-eeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC-----
Q 001248 428 WSPD---GSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----- 498 (1114)
Q Consensus 428 ~spd---g~~las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~----- 498 (1114)
|--. ...+++++.|.++++|.++.++... ....-.||...|-+++..++|. .+++|+.|.+|+||+..+
T Consensus 152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence 7543 3369999999999999998775432 1123349999999999999999 799999999999999321
Q ss_pred --------------------CcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEE
Q 001248 499 --------------------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 558 (1114)
Q Consensus 499 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 558 (1114)
+.++-++.||..+|.++.|.. . ..+++++.|.+|+.||+.+++....+..
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~--~v~yS~SwDHTIk~WDletg~~~~~~~~------- 299 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A--TVIYSVSWDHTIKVWDLETGGLKSTLTT------- 299 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C--CceEeecccceEEEEEeecccceeeeec-------
Confidence 234567889999999999965 2 5899999999999999998766554332
Q ss_pred EEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc---eEEEeccCCCCCCcCeEEEcC-CCCEEE
Q 001248 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNK-DGCLLA 634 (1114)
Q Consensus 559 ~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~-d~~~l~ 634 (1114)
+..+.++.++|..++|++|+.|..|++||.+++. ....+.+| ...|.++.|+| +..+|+
T Consensus 300 ---------------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~ 362 (423)
T KOG0313|consen 300 ---------------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLV 362 (423)
T ss_pred ---------------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEE
Confidence 2255666777777789999999999999998764 33455555 55899999999 567789
Q ss_pred EEeCCCcEEEEEccCCccceeec
Q 001248 635 VSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 635 ~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
+++.|+++++||+++.+..+..+
T Consensus 363 S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 363 SGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred EEecCCeEEEEEeccCCCcceee
Confidence 99999999999998874444444
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7.3e-27 Score=220.81 Aligned_cols=276 Identities=16% Similarity=0.251 Sum_probs=229.5
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee--EeeccccCEEEEeeccCCCceEEEEEecCCeEEE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 537 (1114)
.+.+|...|.+++|+-+|. .+++|+.|+++.+|+++..+... ...+|.+.|..++|++... ..+++++.|++|++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI 91 (313)
T ss_pred HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence 5778999999999999999 79999999999999999876654 4468999999999988654 68999999999999
Q ss_pred EEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC
Q 001248 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617 (1114)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 617 (1114)
||++..++..........+ .+.|+|+|+++++++.|..|.+.|.++.+.....+..
T Consensus 92 wd~r~~k~~~~i~~~~eni----------------------~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-- 147 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI----------------------NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-- 147 (313)
T ss_pred EEeccCcEEEEeeccCcce----------------------EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--
Confidence 9999887766554433322 3566777779999999999999999988877666543
Q ss_pred CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccccc
Q 001248 618 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 697 (1114)
Q Consensus 618 ~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1114)
..+.-++|+.++.+++.....|.|.|...... +.+..
T Consensus 148 -~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~s----------------------------------------- 184 (313)
T KOG1407|consen 148 -FEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQS----------------------------------------- 184 (313)
T ss_pred -ceeeeeeecCCCCEEEEecCCceEEEEecccc-ccccc-----------------------------------------
Confidence 34677889988888877777788877754322 11100
Q ss_pred ccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEE
Q 001248 698 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 777 (1114)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~v 777 (1114)
T Consensus 185 -------------------------------------------------------------------------------- 184 (313)
T KOG1407|consen 185 -------------------------------------------------------------------------------- 184 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccC
Q 001248 778 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM 856 (1114)
Q Consensus 778 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~ 856 (1114)
+. .|.....|+.|+|+|+++|+|+ |-.+.+||++..-+.+.+.
T Consensus 185 ----------------------------------i~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is 228 (313)
T KOG1407|consen 185 ----------------------------------IK--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS 228 (313)
T ss_pred ----------------------------------cc--cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec
Confidence 00 1677778899999999999999 8999999999999999999
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCC
Q 001248 857 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD 923 (1114)
Q Consensus 857 ~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D 923 (1114)
.+.-+|+.+.||. ||++||+|++|..|-|=++++|..+..++ +.++-..|+|+|...+||-++.|
T Consensus 229 RldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 229 RLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 9999999999999 99999999999999999999999988887 78889999999999999988776
No 74
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.4e-26 Score=209.42 Aligned_cols=276 Identities=17% Similarity=0.248 Sum_probs=209.5
Q ss_pred ceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 350 ~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
+.+.++.....|.+++|+|.|. |.|+|+...+.+|-.+..-..++.. .+............-+.|.+.|.|.+||
T Consensus 24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEec
Confidence 3456777889999999999999 6999999999988776432222100 0000000011112356799999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccC--CceeeeeEeeccccCCeeEEEecCC---CCeeEEEEec-CCCCEEEEeCCCCccee
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHG--GDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCG-DDKTIKVWDATNGAKQY 503 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~--~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~~~~ 503 (1114)
|+|++||+|++|++|++.-.+. ........++.-|.+.|..++|..+ +.. +|++++ .|..|++=|..+|+..+
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence 9999999999999999876553 3333344468889999999999754 232 566655 57889999999999999
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
.+.||.+.|.++- +-+|-++++|+.|.+|++||++-..++..+... +.-.|.....+..++++
T Consensus 178 a~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------~~~~glessavaav~vd 240 (350)
T KOG0641|consen 178 ALSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------FHDGGLESSAVAAVAVD 240 (350)
T ss_pred eecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCc--------------ccCCCcccceeEEEEEC
Confidence 9999999999874 334579999999999999999865554433211 11112233466777888
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
|.|++|++|-.|....+||++.++.++.+..| ...|.|+.|+|...++++++.|..|++-|+...
T Consensus 241 psgrll~sg~~dssc~lydirg~r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 241 PSGRLLASGHADSSCMLYDIRGGRMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CCcceeeeccCCCceEEEEeeCCceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 88889999999999999999999999999766 558999999999999999999999999987543
No 75
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=4.5e-27 Score=233.95 Aligned_cols=303 Identities=17% Similarity=0.253 Sum_probs=223.1
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCC-eeEEEEecCCCCEEEE
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVW 494 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~-~~~l~s~~~d~~i~iw 494 (1114)
-..|.+.|.++... ++++++|+.||.++|||..... .. .+.||.++|.+++|--.+. .-.|++++.|.++++|
T Consensus 101 ~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 101 CFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-IK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred cccchhhhhhhccc--CceEEEeecCCeeEEEecCCce-EE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence 34688999999988 8999999999999999987643 33 5889999999888853322 1259999999999999
Q ss_pred eCCCCcc----eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEE-EEecC-C---
Q 001248 495 DATNGAK----QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM-AYSAD-G--- 565 (1114)
Q Consensus 495 d~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~-~~s~~-g--- 565 (1114)
-++.+.. +....||...|.++... ++|..+++|+.|.+|.+|+..... .-.+......-... ...+. +
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~--~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSVD--SSGTRFCSGSWDTMLKIWSVETDE-EDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEec--CCCCeEEeecccceeeecccCCCc-cccccccchhhhhhhhhhhcccccC
Confidence 9887653 33446999999999854 556899999999999999932211 00000000000000 00000 0
Q ss_pred C-eEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEE
Q 001248 566 T-RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644 (1114)
Q Consensus 566 ~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~i 644 (1114)
. ..+.||++ .+..+.|++ ...+++++.|.+|+.||+.++..+.++.... .+.++.++|..++|++|+.|..+++
T Consensus 252 P~vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 252 PLVTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred ceEEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceee
Confidence 0 12222322 455555555 3458999999999999999999998887653 5899999999999999999999999
Q ss_pred EEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCC
Q 001248 645 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 724 (1114)
Q Consensus 645 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 724 (1114)
||.+++...+
T Consensus 327 ~DPR~~~gs~---------------------------------------------------------------------- 336 (423)
T KOG0313|consen 327 WDPRTGDGSV---------------------------------------------------------------------- 336 (423)
T ss_pred cCCCCCCCce----------------------------------------------------------------------
Confidence 9987661100
Q ss_pred ceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCC
Q 001248 725 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 804 (1114)
Q Consensus 725 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~ 804 (1114)
....
T Consensus 337 ------------------------------v~~s---------------------------------------------- 340 (423)
T KOG0313|consen 337 ------------------------------VSQS---------------------------------------------- 340 (423)
T ss_pred ------------------------------eEEe----------------------------------------------
Confidence 0000
Q ss_pred CccccccCCCCCCCCCccEEEEeeCCC-EEEEEe-CCeEEEEEcCCCc-cccccCCCCCCeEEEEEecCCCcEEEEEeCC
Q 001248 805 GIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHPQDNNIIAIGMDD 881 (1114)
Q Consensus 805 g~~~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~-dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d 881 (1114)
+. +|.+.|.++.++|... .|++++ |+++++||+++.+ .+..+.+|...|.++.|+ ++..|++|+.|
T Consensus 341 -------~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD 409 (423)
T KOG0313|consen 341 -------LI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGAD 409 (423)
T ss_pred -------ee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCc
Confidence 11 2788888888888665 466777 9999999999877 889999999999999998 47799999999
Q ss_pred CcEEEEEc
Q 001248 882 SSIQIYNV 889 (1114)
Q Consensus 882 g~v~iwd~ 889 (1114)
.+|+|+.-
T Consensus 410 ~~l~i~~~ 417 (423)
T KOG0313|consen 410 NKLRIFKG 417 (423)
T ss_pred ceEEEecc
Confidence 99999864
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=5.1e-28 Score=243.19 Aligned_cols=260 Identities=18% Similarity=0.288 Sum_probs=216.1
Q ss_pred CCCCcceeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCe
Q 001248 345 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 423 (1114)
Q Consensus 345 ~~~~~~~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 423 (1114)
+.+|......+. |.++|..+.|-++... |++|+.|..|.+|++..++.... .++.|-.+.|
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i 222 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI 222 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence 345666666666 9999999999999775 99999999999999987662210 1577888899
Q ss_pred eEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee
Q 001248 424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1114)
Q Consensus 424 ~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 503 (1114)
+.++|.++++.+++++.|+.+++|++...+... +|.||.+.|+++.|..... .+++|+.|.+|++||+....|.+
T Consensus 223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence 999999999999999999999999999987666 7999999999999998776 59999999999999999998888
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
++- ....+..++.. ...+++|-.|+.|++||.++.........++ .|+++..+++|.
T Consensus 298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~----------------- 354 (459)
T KOG0288|consen 298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL----------------- 354 (459)
T ss_pred ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe-----------------
Confidence 765 33455555533 2578999999999999999988777766655 677777766665
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC--CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcccee
Q 001248 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1114)
.+++.+.|.++.+.|+++......+...+. ....+.+.|||++.|+++|+.||.|+||++.++ ++..
T Consensus 355 ----~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~ 423 (459)
T KOG0288|consen 355 ----ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEK 423 (459)
T ss_pred ----EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEE
Confidence 688889999999999999998888865432 234788999999999999999999999999988 4433
No 77
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=237.10 Aligned_cols=269 Identities=18% Similarity=0.261 Sum_probs=216.2
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeecc----CCCCcccccccccCCCCCeeEE
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL----GACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
....-.|.-.|+||+++||+++ .++++.+|+|.=|++.+|+.... +|.- +.-..+.+... .+|...|.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence 3445559999999999999997 99999999999999999986531 1111 10112222222 4899999999
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee
Q 001248 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1114)
Q Consensus 427 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 506 (1114)
+.|+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++-
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence 999999999999999999999999988776 6899999999999987666 58999999999999999999999999
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
||.+.|.++...... ..+-.|+.|+++++|++. .+....+.++...+.+++|-.+..
T Consensus 284 GHqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~H-------------------- 340 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEH-------------------- 340 (479)
T ss_pred CCccceeeechhccc--ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccc--------------------
Confidence 999999999754332 455555699999999994 345556666666777777665554
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEeccCC----------CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcccee
Q 001248 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADG----------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1114)
+++|+.+|.|.+|++...+++.+..... +..+|++++..|...++++|+.+|.|++|-+.++.+.+.
T Consensus 341 --fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 341 --FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred --eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccc
Confidence 9999999999999999988887764211 112788999999999999999999999999988844333
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=5.2e-27 Score=265.48 Aligned_cols=304 Identities=18% Similarity=0.250 Sum_probs=239.8
Q ss_pred cccceEEEEEccCcceeeecc--cCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 750 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
+...|.++..+|+|..+++++ .|+.++||+...--. ....++..-...+. ....|.+.|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~---~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLC---TMDDHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhe---eeccccCceeEEEEC
Confidence 455689999999999999999 788999998653110 01112221111111 112399999999999
Q ss_pred eCCCEEEEEe-CCeEEEEEcCC------------------CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 828 KNDSYVMSAS-GGKISLFNMMT------------------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 828 ~d~~~l~~~~-dg~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
+||++||+|+ |+-|.||+... .+....+.+|...|..++|+| ++.+||+++-|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 9999999999 68899999872 124566889999999999999 999999999999999999
Q ss_pred cccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEE
Q 001248 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1114)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~ 968 (1114)
..+.+.+..+++|.+.|-++.|.|-|++|||-+.|++|+||++....... .+..+-.+.........+.|||||++|+
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCeec
Confidence 99999999999999999999999999999999999999999977644322 2222223333334678999999999999
Q ss_pred E--EeC---CeEEEEEcCCCceeeeeecCCCCcCeeEEEECC-----CCC------------EEEEEEcCCeEEEEEcCC
Q 001248 969 V--VHE---TQLAIFETTKLECVKQWVPRESSAPITHATFSC-----DSQ------------LVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 969 ~--~~d---~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~-----dg~------------~l~s~s~Dg~I~vwd~~~ 1026 (1114)
+ +.. ..+.|.+-.+.+.-..+. ||.+++.++.|+| ..+ .+|+|+.|++|.||....
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 9 333 368888887777766766 8999999999988 111 578999999999999988
Q ss_pred CeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1027 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
.+++..+. . +. + -..+.++|+| ||..|..+|.||+|.+..++++|
T Consensus 314 ~RPl~vi~--~-lf----~--~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 314 PRPLFVIH--N-LF----N--KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCchhhhh--h-hh----c--CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 88876543 1 11 1 3345999999 79999999999999999998877
No 79
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=5.5e-26 Score=215.53 Aligned_cols=234 Identities=12% Similarity=0.103 Sum_probs=198.7
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
.+.+|+.+++.+.|+.+|. ||++++.|.++.||-..+|+.+. .+.||++.|+|++.+-+.
T Consensus 5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlG-------------------ty~GHtGavW~~Did~~s 64 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLG-------------------TYDGHTGAVWCCDIDWDS 64 (327)
T ss_pred ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceee-------------------eecCCCceEEEEEecCCc
Confidence 4556999999999999999 79999999999999999999987 489999999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEec-----CCCCEEEEeCC-------CCc
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDAT-------NGA 500 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~-----~d~~i~iwd~~-------~~~ 500 (1114)
+++++|+.|.++++||+++|+++.. + .-..+|..+.|+++|.. ++.+. ..+.|.++|++ ..+
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e 138 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSEE 138 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence 9999999999999999999998873 2 34668999999999994 33332 34679999998 445
Q ss_pred ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCee-eecCCCCeeEEEEEecCCCeEEeeecccceeE
Q 001248 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579 (1114)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~ 579 (1114)
+...+..+...++.+-|.+.. ++|++|..||.|..||++++.... ....|...|..+.+++|..
T Consensus 139 p~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T------------- 203 (327)
T KOG0643|consen 139 PYLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT------------- 203 (327)
T ss_pred ceEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcc-------------
Confidence 677888889999999987765 799999999999999999875544 4456666777777777665
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeC
Q 001248 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 638 (1114)
Q Consensus 580 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 638 (1114)
++++++.|.+-++||..+.+.++++... .++++.+++|-...++.|+.
T Consensus 204 --------~FiT~s~Dttakl~D~~tl~v~Kty~te---~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 204 --------YFITGSKDTTAKLVDVRTLEVLKTYTTE---RPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred --------eEEecccCccceeeeccceeeEEEeeec---ccccceecccccceEEecCC
Confidence 7999999999999999999999998754 46999999997777777654
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=238.63 Aligned_cols=248 Identities=21% Similarity=0.251 Sum_probs=202.6
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
....+.|++++|||...|=+|+.+ .-.|.||+..+..... .+......|.++.|-.||++
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRL 82 (487)
T ss_pred ccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeE
Confidence 346788999999997776455433 5689999988765543 24455668999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
||+|+..|.|+|+|+++...++ .+.+|..+|..+.|+|+++. .+++|++|+.+++||+.+......+.+|++.|.+
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred EEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 9999999999999977754455 68899999999999999887 7999999999999999999887799999999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
.+|++.. +.+++|||.||.|++||++.......--.|+.+|.++.+-|.|. +++...
T Consensus 159 g~~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs----------------------~iasAg 215 (487)
T KOG0310|consen 159 GDISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS----------------------LIASAG 215 (487)
T ss_pred eccccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC----------------------EEEEcC
Confidence 9998754 47999999999999999998754444455777888888888776 444445
Q ss_pred CCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.+.|++||+.+|..+..... .|...|+|+.+..++..|++++-|+.+++||..+-
T Consensus 216 Gn~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 216 GNSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred CCeEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeecccccceEEEEccce
Confidence 67899999986654443333 13558999999999999999999999999996544
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=4e-26 Score=257.57 Aligned_cols=243 Identities=19% Similarity=0.336 Sum_probs=212.4
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
.+...+.|..|. ++ .+.+|+.+++|.+||..++..+.. .+.||.+.|+++++..-+.+|
T Consensus 206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l 264 (537)
T KOG0274|consen 206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL 264 (537)
T ss_pred cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence 367889999999 44 389999999999999999988763 388999999999998889999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEE
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1114)
++|+.|.+++|||..+|++.. ++.+|.+.|.++...+. ++++|+.|.+|++|+++++.++.++.+|.++|.++
T Consensus 265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 999999999999999999887 78999999999988643 68899999999999999999999999999999999
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
..+ +.++++|+.|++|++||+.+.+++..+.+|...|.++.+.... .+++|+.|
T Consensus 338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~----------------------~~~Sgs~D 391 (537)
T KOG0274|consen 338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSEN----------------------RLLSGSLD 391 (537)
T ss_pred Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcc----------------------eEEeeeec
Confidence 864 3699999999999999999999999999999999998776542 59999999
Q ss_pred CeEEEEECCCc-ceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 596 FSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 596 g~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
++|++||+.++ +++.++..|.. .+. .+...+++|++++.|++|++||..++ +..+.+
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~--~v~--~l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~ 449 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTS--LVS--SLLLRDNFLVSSSADGTIKLWDAEEG-ECLRTL 449 (537)
T ss_pred cceEeecCCchhhhhhhhcCCcc--ccc--ccccccceeEeccccccEEEeecccC-ceeeee
Confidence 99999999999 89999987754 333 33446789999999999999998887 444443
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=4.8e-26 Score=215.28 Aligned_cols=278 Identities=17% Similarity=0.209 Sum_probs=225.1
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
-+.+|...|.+|+|+-+|..||+|+.|+++.+|++...+.. ......+|.+.|-.++|.|.... .+++++.|.+|++|
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~w 92 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIW 92 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEE
Confidence 46789999999999999999999999999999999987433 33457799999999999998777 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
|++.++++.......+.+.. +| +|+|.+++.++.|..|.+.|.++.+........ .
T Consensus 93 d~r~~k~~~~i~~~~eni~i-~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-~-------------------- 148 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINI-TW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-F-------------------- 148 (313)
T ss_pred EeccCcEEEEeeccCcceEE-EE--cCCCCEEEEecCcccEEEEEecccceeehhccc-c--------------------
Confidence 99999999988766666654 55 456689999999999999999875544332211 1
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
.+.-++|+.++++++.....|.|.|......++++.++.|. ....|+.|+|+|+++|+|+.|-.+.+||+... .+.
T Consensus 149 -e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC~ 224 (313)
T KOG1407|consen 149 -EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGSADALVSLWDVDEL-ICE 224 (313)
T ss_pred -eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEeeccccceeeccChhHh-hhh
Confidence 22334555555677777778999999999999999999875 46889999999999999999999999997543 111
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
+.+.
T Consensus 225 R~is---------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 225 RCIS---------------------------------------------------------------------------- 228 (313)
T ss_pred eeec----------------------------------------------------------------------------
Confidence 1110
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
T Consensus 229 -------------------------------------------------------------------------------- 228 (313)
T KOG1407|consen 229 -------------------------------------------------------------------------------- 228 (313)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD 881 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d 881 (1114)
.++-+|..+.||.||++||+++ |..|-|=++++|..+..++ +.++-..++|+| ...+||.+.+|
T Consensus 229 -RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd 293 (313)
T KOG1407|consen 229 -RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD 293 (313)
T ss_pred -cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence 0566788888888888888888 8888888999999888887 778899999999 88999988866
No 83
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=255.43 Aligned_cols=276 Identities=15% Similarity=0.246 Sum_probs=212.3
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEeeccccc---------------CCCCC--------------ccc------
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER---------------NSSGK--------------ATA------ 793 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~---------------~~~~~--------------~~~------ 793 (1114)
.|.+.|.++.||+||++||++|.|+.|+||.+...+. ...+. ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4899999999999999999999999999999876210 00000 000
Q ss_pred cccccccCCCCCccccccC-CCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCC
Q 001248 794 SVAPQLWQPPSGIMMTNDV-TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD 871 (1114)
Q Consensus 794 ~~~~~~w~~~~g~~~~~~~-~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d 871 (1114)
... .+.+.....+....+ .-.+|...|..+.||.++ +|++++ |.+||||++...+++..|. |...|||++|+|.|
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred Ccc-ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 000 011111111111100 112599999999999887 566666 9999999999999999998 99999999999999
Q ss_pred CcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCC
Q 001248 872 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 951 (1114)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 951 (1114)
.+++++|+-||.||||++...+.+.-.. -..-|++++|+|||+..+.|+.+|.+++|+....+......+....+....
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~ 500 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQ 500 (712)
T ss_pred CCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcccc
Confidence 9999999999999999999877654444 347899999999999999999999999999998776655555555444444
Q ss_pred CCCceEEEEccCC--cEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 952 AQSDTRVQFHQDQ--IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 952 ~~~i~~v~fspdg--~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
...|+.+.|.|.. +.|+++.|..|+|||..+...+..+..-.....-....|+.||++|+++++|..|+||++....
T Consensus 501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 4579999999754 4788899999999999888888777632334455778899999999999999999999984433
No 84
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-26 Score=217.20 Aligned_cols=287 Identities=18% Similarity=0.255 Sum_probs=223.6
Q ss_pred eEEEEcC--CCCeEEEEEec-----CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCC
Q 001248 362 MSMDFHP--VQQTLLLVGTN-----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS 433 (1114)
Q Consensus 362 ~~v~~sp--dg~~ll~tg~~-----dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 433 (1114)
.++.||| +++..+|+++. .|++.|-++..++.+.. ++-+| -.+.+..++||+ ...
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCcc
Confidence 6788999 45533444432 57899999875544432 22222 245899999999 456
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEE
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1114)
.+++++.||+++|||+.- .-.++..++.|...|.++.|++-.++ .++++|-|++|++|+...++.++++.||..-|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 788889999999999543 23355578999999999999998777 677889999999999999999999999999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
...|+|... +++++++.|+++++||++.......+..|...+.+..|+.-.. +.+++|+
T Consensus 152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------------------~vl~Tg~ 210 (311)
T KOG0277|consen 152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------------------NVLATGG 210 (311)
T ss_pred EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--------------------cEEEecC
Confidence 999998754 7999999999999999998887777888877777777765443 4689999
Q ss_pred CCCeEEEEECCCc-ceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCC
Q 001248 594 DDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1114)
Q Consensus 594 ~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1114)
.|+.|++||++.- .++..+.+| .-.|+.+.||| ...+|++++.|-+++|||...+...+.....|+.-+...
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh--~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~---- 284 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGH--GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGL---- 284 (311)
T ss_pred CCceEEEEehhhccccceeecCC--ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecc----
Confidence 9999999999864 456666555 44799999999 467899999999999999987766777766665433211
Q ss_pred CCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEe
Q 001248 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1114)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1114)
.+ ...+...+++.+-|..+.+|+.
T Consensus 285 --Dw----------------------------------s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 285 --DW----------------------------------SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred --cc----------------------------------ccccCceeeecccccceeeecc
Confidence 11 1125678899999999999974
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=256.40 Aligned_cols=272 Identities=14% Similarity=0.171 Sum_probs=203.0
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEE-----------------------------eee-------
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-----------------------------RNF------- 399 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~-----------------------------~~~------- 399 (1114)
.|.+.||++.||+||+| ||+|+.||.|+||.+...+.... ...
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 49999999999999996 99999999999999876111000 000
Q ss_pred -----eeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEec
Q 001248 400 -----KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS 474 (1114)
Q Consensus 400 -----~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s 474 (1114)
.+.+......+-+...+.||.+.|..+.||.++ +|++++.|++|+||++...++++ .| .|..-|+||+|.
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~---~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK---VF-SHNDFVTCVAFN 418 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee---EE-ecCCeeEEEEec
Confidence 000000000111223588999999999999654 88999999999999999999887 33 699999999999
Q ss_pred CCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCC
Q 001248 475 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR 554 (1114)
Q Consensus 475 ~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 554 (1114)
|-+.. ||++|+-|+.|+||++...+.+.-.. -..-|+++|+. |||++.+.|+.+|.+++|+....+.......
T Consensus 419 PvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~--PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I--- 491 (712)
T KOG0283|consen 419 PVDDR-YFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYS--PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI--- 491 (712)
T ss_pred ccCCC-cEeecccccceEEeecCcCeeEeehh-hhhhheeEEec--cCCceEEEEEeccEEEEEEccCCeEEEeeeE---
Confidence 97776 89999999999999998877654433 44889999975 4578999999999999999886554432211
Q ss_pred eeEEEEEecCCCeEEeeecccceeEEEecCCC-CEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEE
Q 001248 555 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633 (1114)
Q Consensus 555 ~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 633 (1114)
.-.+++- ...+.|+.+.|.|.. ..+++.+.|..|||||.++..++..+++......-....|+.||++|
T Consensus 492 -------~~~~~Kk---~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 492 -------RLHNKKK---KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI 561 (712)
T ss_pred -------eeccCcc---ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence 1110000 001134444444322 35888999999999999999999999877655556788999999999
Q ss_pred EEEeCCCcEEEEEccCC
Q 001248 634 AVSTNDNGIKILATSDG 650 (1114)
Q Consensus 634 ~~~~~dg~i~iwd~~~~ 650 (1114)
+++++|..|++|+....
T Consensus 562 Vs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDSF 578 (712)
T ss_pred EEeecCceEEEEeCCCC
Confidence 99999999999997543
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.2e-25 Score=217.05 Aligned_cols=253 Identities=15% Similarity=0.247 Sum_probs=210.0
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEcccce
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDE 893 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~--dg~v~iwd~~~~~ 893 (1114)
....|.++.|+.+|.++++++ |..++|||..+++.++++..+.-.+..+.|.. ..+.+..++. |.+|+..++.+.+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCc
Confidence 467899999999999999988 78999999999999999998888899999987 4555555655 8899999999999
Q ss_pred EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCC
Q 001248 894 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 973 (1114)
Q Consensus 894 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~ 973 (1114)
.++.|.||...|++|+.+|-+..++|++.|++|++||++..+.+.. +... .-..++|.|+|-++|++.++
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~--l~~~--------~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL--LNLS--------GRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE--EecC--------CCcceeECCCCcEEEEecCC
Confidence 9999999999999999999999999999999999999997544322 1111 23578999999999997444
Q ss_pred -eEEEEEcCCC--ceeeeeecC-CCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCcc
Q 001248 974 -QLAIFETTKL--ECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1049 (1114)
Q Consensus 974 -~i~iwd~~~~--~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1049 (1114)
.|++||++.. ....++... +-....+.|.|||||++|+.+...+.+++.|.-+|..+..+. ++....-.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-------~~~~~~~~ 234 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-------GYPNAGNL 234 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-------eccCCCCc
Confidence 9999999865 233444432 346689999999999999999999999999999999998887 22233344
Q ss_pred ceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcccCCC
Q 001248 1050 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPP 1088 (1114)
Q Consensus 1050 ~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~~ 1088 (1114)
++..+|.| |++++++|+.||+|.+|++.+|+.......
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 57899999 799999999999999999999994444433
No 87
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3.4e-26 Score=235.94 Aligned_cols=296 Identities=16% Similarity=0.236 Sum_probs=226.5
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
.+|...|..+++.|.|.++++++-|..|++||++.-..+ -...... .. .....|.++.|+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas-----------------~~~fr~l-~P--~E~h~i~sl~ys 223 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS-----------------MRSFRQL-QP--CETHQINSLQYS 223 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEeccccccc-----------------chhhhcc-Cc--ccccccceeeec
Confidence 347888999999999999999999999999998742211 0000010 11 146679999999
Q ss_pred eCCCEEEEEe-CCeEEEEEcCCCccccc------------cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce-
Q 001248 828 KNDSYVMSAS-GGKISLFNMMTFKTMAT------------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE- 893 (1114)
Q Consensus 828 ~d~~~l~~~~-dg~i~iwd~~~~~~~~~------------~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~- 893 (1114)
+.|..|++.+ ....+|+|....+.... -++|...++|.+|+|.....+.+++.||++||||+..-+
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999888877 78899999865443322 257888999999999888899999999999999997632
Q ss_pred EEEee-----cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEE
Q 001248 894 VKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1114)
Q Consensus 894 ~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~ 968 (1114)
.+..+ .+-.-.++.++|++||+++|.|+.||.|.+|+..+..... .......|.. ...|+++.||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence 22222 2344578999999999999999999999999986543322 2333344432 24799999999999999
Q ss_pred E-EeCCeEEEEEcCCCc-eeeeeecCCCCcCeeEEEECCCCCEEEEEEc------CCeEEEEEcCCCeeeEEeCCCcccC
Q 001248 969 V-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFL------DATVCVFSAANLKLRCRINPSAYLP 1040 (1114)
Q Consensus 969 ~-~~d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~------Dg~I~vwd~~~~~~~~~~~~~~~~~ 1040 (1114)
+ +.|+.+++||++..+ ++..+..-....+-+.++||||.++|++|.. .|.+++||..+...+.++...
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---- 456 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---- 456 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence 9 999999999998764 4444432223556789999999999999874 478999999999999988732
Q ss_pred CCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1041 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1041 ~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
+ ..++.+.|+|. =+.|.+|+.||+++|+==
T Consensus 457 -~-----aSvv~~~Whpk-LNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 457 -T-----ASVVRCLWHPK-LNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred -C-----ceEEEEeecch-hhheeeecCCCceEEEEC
Confidence 1 34558999994 677888999999998643
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.6e-27 Score=237.10 Aligned_cols=286 Identities=19% Similarity=0.327 Sum_probs=233.1
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ ...+.+|.|..++|+++.|.++++ .+++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 477899999999999999999999999999999998776 334447888899999999999999 78999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
++...+...++.||.+.|+++.|.... ..+++|+.|.+|+.||+....+..+.- ....+..++.+
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~------------ 311 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS------------ 311 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec------------
Confidence 999999999999999999999876544 349999999999999998755443322 11222222222
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
...+++|-.|+.|++||+++..+......++ .|+++..+++|..|.+.+.|.++.+.|.++. ...
T Consensus 312 -----------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~ 376 (459)
T KOG0288|consen 312 -----------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIR 376 (459)
T ss_pred -----------ceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccc-cEE
Confidence 1247788899999999999999999998765 5999999999999999999999999998765 221
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
..+
T Consensus 377 ~~~----------------------------------------------------------------------------- 379 (459)
T KOG0288|consen 377 QTF----------------------------------------------------------------------------- 379 (459)
T ss_pred EEe-----------------------------------------------------------------------------
Confidence 111
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
+..|. .
T Consensus 380 -------------------------sA~g~-----------------------------------------------k-- 385 (459)
T KOG0288|consen 380 -------------------------SAEGF-----------------------------------------------K-- 385 (459)
T ss_pred -------------------------ecccc-----------------------------------------------c--
Confidence 11110 0
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCC--CeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
.....+.+.|||++.|+++|+ ||.|+||++.++++...+..... .|++++|+| .|..|++++.++.+.+|
T Consensus 386 --~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 386 --CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred --cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 122367789999999999999 99999999999998888765544 599999999 89999999999999999
No 89
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=4.9e-25 Score=249.15 Aligned_cols=299 Identities=14% Similarity=0.159 Sum_probs=217.0
Q ss_pred ccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee-C
Q 001248 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-N 829 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~-d 829 (1114)
...|.....++++..++++..+.....|+...+. ..++....|+.......-.+|.+.|.+++|+| +
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence 3455556677787778888888888888754321 11333334443321111234999999999999 8
Q ss_pred CCEEEEEe-CCeEEEEEcCCC-------ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccc
Q 001248 830 DSYVMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 901 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h 901 (1114)
+++|++++ |++|++||+.++ ..+..+.+|...|.+++|+|.++++|++|+.|++|+|||+.+++.+..+.+|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 89999999 999999999764 2456788999999999999944579999999999999999999999999999
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-E----eCCeEE
Q 001248 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V----HETQLA 976 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~----~d~~i~ 976 (1114)
...|++++|+|+|.+|++++.|++|+|||+.+++. +....+|.. .....+.|.+++..+++ + .|+.|+
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIM 240 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence 99999999999999999999999999999998553 222333432 23457789998888776 3 378999
Q ss_pred EEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEe
Q 001248 977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1055 (1114)
Q Consensus 977 iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1055 (1114)
+||+++...........+...+....|++|+.+|++++ .|+.|++||+.+++++....... ..... .++|
T Consensus 241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-------~~~~~--g~~~ 311 (493)
T PTZ00421 241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-------VEPHK--GLCM 311 (493)
T ss_pred EEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-------CCCCc--ceEe
Confidence 99998765433322112344566778999999999887 59999999999998876654111 11123 5667
Q ss_pred cCCCCCeEEEEeCCCcEEEEeccCC
Q 001248 1056 HPQEPNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1056 ~~~d~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
.|. ..+-...---.+++.+...
T Consensus 312 ~pk---~~~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 312 MPK---WSLDTRKCEIARFYALTYH 333 (493)
T ss_pred ccc---ccccccceeeeEEEEecCC
Confidence 762 2232333334466666543
No 90
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.7e-25 Score=217.14 Aligned_cols=304 Identities=17% Similarity=0.239 Sum_probs=224.7
Q ss_pred CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccc
Q 001248 616 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1114)
Q Consensus 616 ~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1114)
+|...|++++|+.||++|++++.|++|++|++++-.. +.|...
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~-----~eHr~~-------------------------------- 126 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN-----KEHRCI-------------------------------- 126 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh-----hhhhHh--------------------------------
Confidence 3355899999999999999999999999999876311 111100
Q ss_pred ccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeeccc-Cce
Q 001248 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAI 774 (1114)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~ 774 (1114)
...+ ..+..+.+.|+||-+.+++... ...
T Consensus 127 ----------------------------------------------R~nv----e~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 127 ----------------------------------------------RQNV----EYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred ----------------------------------------------hccc----cCCCceEEEECCCcceEEEEEccCCE
Confidence 0000 1235578899999887766655 468
Q ss_pred EEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccc
Q 001248 775 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA 853 (1114)
Q Consensus 775 i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~ 853 (1114)
+++|.+...+. |...-. ..-||-. .. ...|.-.+..+-+..++++|++++ |.+|.+|+++ |+.+.
T Consensus 157 l~vyk~~K~~d---G~~~~~--~v~~D~~--~f------~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~ 222 (420)
T KOG2096|consen 157 LCVYKLVKKTD---GSGSHH--FVHIDNL--EF------ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ 222 (420)
T ss_pred EEEEEeeeccc---CCCCcc--ccccccc--cc------chhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee
Confidence 99998764322 111110 0112200 00 012666677788888999999999 8899999998 88888
Q ss_pred ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc---c-----eEEEeecccccCeeEEEEcCCCCEEEEEeCCCc
Q 001248 854 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---D-----EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 925 (1114)
Q Consensus 854 ~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~---~-----~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~ 925 (1114)
.+......-+..+.|| +|++||+++..--|++|.+-- | ..+..++||.+.|..++||++...+++.|.||+
T Consensus 223 ~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~ 301 (420)
T KOG2096|consen 223 SIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK 301 (420)
T ss_pred eeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc
Confidence 8877777778899999 999999999999999998742 2 245678999999999999999999999999999
Q ss_pred EEEEeCCCCcccccc--ccccCCCCC-CCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEE
Q 001248 926 LCVWSSDGWEKQKNR--FLQIPTGRT-PTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHAT 1002 (1114)
Q Consensus 926 v~iwd~~~~~~~~~~--~~~~~~~~~-~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~ 1002 (1114)
++|||++-.-..... .+....... ...+....+.++|.|+.||++....+.+|..++++....+. +.|+..|++++
T Consensus 302 wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e-~~h~~~Is~is 380 (420)
T KOG2096|consen 302 WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELE-DIHSTTISSIS 380 (420)
T ss_pred EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHH-HhhcCceeeEE
Confidence 999998753222211 122211110 11134468999999999999999999999999998877765 47899999999
Q ss_pred ECCCCCEEEEEEcCCeEEEEE
Q 001248 1003 FSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 1003 ~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
|++||+++++++ |..++|+.
T Consensus 381 ~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 381 YSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ecCCCcEEeeec-ceeeeeec
Confidence 999999999987 88888876
No 91
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.5e-26 Score=223.41 Aligned_cols=247 Identities=13% Similarity=0.209 Sum_probs=201.0
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
|...|.++.|.|....|++++.|++|+++|+........ ++-.....+|.++.|+|.
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA-----------------------~K~~qd~~~vrsiSfHPs 227 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA-----------------------FKVFQDTEPVRSISFHPS 227 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH-----------------------HHHhhccceeeeEeecCC
Confidence 889999999999999999999999999999864321100 000114678999999999
Q ss_pred CCEEEEEeC-CeEEEEEcCCCcccccc---CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec-ccc-c
Q 001248 830 DSYVMSASG-GKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHS-K 903 (1114)
Q Consensus 830 ~~~l~~~~d-g~i~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~-~h~-~ 903 (1114)
|.+|++|.| .++++||+.+.++...- .+|.+.|+++.+++ .+++.++|+.||.|++||--+++++.++. +|. .
T Consensus 228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs 306 (430)
T KOG0640|consen 228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS 306 (430)
T ss_pred CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence 999999995 78999999998876543 46888999999999 99999999999999999999999998874 464 4
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcC
Q 001248 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT 981 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~ 981 (1114)
.|.+..|+.+|+++.|.+.|.++++|++.++.....-.-.-..+... .-+...|.....|++.- ..+.++-||.+
T Consensus 307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~---~rtqAvFNhtEdyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK---HRTQAVFNHTEDYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred eeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh---hhhhhhhcCccceEEccccccCceeecccc
Confidence 69999999999999999999999999999976533211111111111 22456777777787773 45789999999
Q ss_pred CCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001248 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1114)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~ 1024 (1114)
++..+..+.. +|++.+..+.-||.+.-+++++.|..+++|--
T Consensus 384 tadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 384 TADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred chhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 9998887775 89999999999999999999999999999963
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-24 Score=213.37 Aligned_cols=288 Identities=19% Similarity=0.349 Sum_probs=231.9
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec--CCeEEE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL--DGKIKA 537 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--d~~i~~ 537 (1114)
.+..-.+.|.++.|+++|. ++++++.|.++++||..+|+.++++..+.-.+..++|...++ .++.++. |.+|+.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~--~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGL--LLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccCCCceeEEEecCCCC--EEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 4555677899999999999 788999999999999999999999998888898899866553 4555555 889999
Q ss_pred EEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC
Q 001248 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617 (1114)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 617 (1114)
-++.+.+.+..+.+|...|.+++.+|-+. .+++++.|++|++||++..++...+...+.
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d---------------------~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~ 143 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDD---------------------TFLSSSLDKTVRLWDLRVKKCQGLLNLSGR 143 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCC---------------------eEEecccCCeEEeeEecCCCCceEEecCCC
Confidence 99999999999999998888888777654 699999999999999999888887765433
Q ss_pred CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc-cceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccc
Q 001248 618 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI-RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 696 (1114)
Q Consensus 618 ~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1114)
..++|.|+|-++|++...+.|++||++.-. .....+
T Consensus 144 ----pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf--------------------------------------- 180 (311)
T KOG1446|consen 144 ----PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF--------------------------------------- 180 (311)
T ss_pred ----cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeE---------------------------------------
Confidence 568999999999999988899999986531 011000
Q ss_pred cccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEE
Q 001248 697 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 776 (1114)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~ 776 (1114)
..+
T Consensus 181 ---------------------------------------------------------------~i~-------------- 183 (311)
T KOG1446|consen 181 ---------------------------------------------------------------SIT-------------- 183 (311)
T ss_pred ---------------------------------------------------------------ccC--------------
Confidence 000
Q ss_pred EEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccccc
Q 001248 777 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF 855 (1114)
Q Consensus 777 vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~ 855 (1114)
.+.....+.+.|||||++++.+. .+.+++.|.-+|..+.++
T Consensus 184 --------------------------------------~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 184 --------------------------------------DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred --------------------------------------CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeE
Confidence 00234456778888888888777 677888888888888877
Q ss_pred CCCCCCe---EEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc-cccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 856 MPPPPAA---TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 856 ~~~~~~i---~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
..+...- ...+|+| |++++.+|+.||+|.+|+++++..+..+++ +.+++.++.|+|.-..+||+ +..+.+|-.
T Consensus 226 s~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p 302 (311)
T KOG1446|consen 226 SGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLP 302 (311)
T ss_pred eeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEec
Confidence 6655432 6788999 999999999999999999999999999999 79999999999876666655 567888865
Q ss_pred CC
Q 001248 932 DG 933 (1114)
Q Consensus 932 ~~ 933 (1114)
..
T Consensus 303 ~~ 304 (311)
T KOG1446|consen 303 DE 304 (311)
T ss_pred cc
Confidence 54
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=244.84 Aligned_cols=253 Identities=19% Similarity=0.262 Sum_probs=208.5
Q ss_pred CCCCce---EEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 357 QGSSPM---SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 357 h~~~v~---~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
|...|. ++..+..+.++|+||+.||.|++|++....... +.++.. .+..|.+.|+.++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------------s~~~~a-sme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------------STPYIA-SMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc------------ccchhh-hhhhhHhHHhhHHhhcCCC
Confidence 444455 555655444459999999999999987543321 112222 4788999999999999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEe-cCCCCeeEEEEecCCCCEEEEeCCCCc--ceeE------
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLCVITCGDDKTIKVWDATNGA--KQYI------ 504 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~-s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~------ 504 (1114)
.|++++.|-+|++|+...+. -.+..++..|..-|.|++. .++.. ++|+||.|+.|.+||+.++. .+.+
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998774 1233378899999999999 66666 89999999999999999873 2322
Q ss_pred --ee-ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 505 --FE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 505 --~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
+. |+...|.+++.+ ++|..+++|+..+.+++||.++.+.+..+.+|...|..+..+.||+
T Consensus 164 ~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt--------------- 226 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT--------------- 226 (735)
T ss_pred ccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC---------------
Confidence 23 788999999864 4557999999999999999999999999999998888888777776
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++++++.||+|++||+...+++.++..|.. .|.++..+|+=..+++|+.||.|..-|+.+.
T Consensus 227 ------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 227 ------RLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ------eEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 699999999999999999999999988854 5999999999999999999999999888775
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2.1e-25 Score=251.70 Aligned_cols=295 Identities=18% Similarity=0.259 Sum_probs=241.5
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC
Q 001248 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1114)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 497 (1114)
.|...+.+..|. +.++++++.|++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 356788999998 77899999999999999999887662 3889999999999987555 79999999999999999
Q ss_pred CCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
+|++..++.+|.+.|.++.... .++++|+.|.+|++|++.++..+..+.+|..+|.++.+.
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--------------- 340 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--------------- 340 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---------------
Confidence 9999999999999999997432 578899999999999999988888888888888887765
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
+.++++|+.|++|.+||+.+++++..+.+| ...|.++.+... ..+++|+.|++|++||+.+..+++..+
T Consensus 341 --------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH--~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 341 --------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH--TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred --------CCEEEEEecCceEEEEEhhhceeeeeecCC--cceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 236999999999999999999999999986 458999987665 899999999999999998774333333
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCC
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1114)
.+|
T Consensus 410 ~~h----------------------------------------------------------------------------- 412 (537)
T KOG0274|consen 410 QGH----------------------------------------------------------------------------- 412 (537)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 222
Q ss_pred ccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCC
Q 001248 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 817 (1114)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~ 817 (1114)
T Consensus 413 -------------------------------------------------------------------------------- 412 (537)
T KOG0274|consen 413 -------------------------------------------------------------------------------- 412 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 818 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
..-+..+. ..+++|++++ |++|++||..++++++++.+ |...|.++++. ...+++++.||++++||+.++++.
T Consensus 413 ~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 413 TSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cccccccc--cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchh
Confidence 11121111 2456788888 99999999999999999998 67889888886 347888999999999999999988
Q ss_pred Eeecccc-cCeeEEEE
Q 001248 896 SKLKGHS-KRITGLAF 910 (1114)
Q Consensus 896 ~~l~~h~-~~V~~l~~ 910 (1114)
..+-.+. .....+++
T Consensus 488 ~~l~~~~~~~~~~~~~ 503 (537)
T KOG0274|consen 488 RTLLSTDLGATWGVAP 503 (537)
T ss_pred hhhhhccccccccccc
Confidence 8774443 33333444
No 95
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.1e-26 Score=215.62 Aligned_cols=252 Identities=13% Similarity=0.253 Sum_probs=210.8
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
..+.+.-.+.+..|+||+.....+++++.||.++|||...... +...++.|..+|.++.|++
T Consensus 53 e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn~ 114 (311)
T KOG0277|consen 53 ECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWNT 114 (311)
T ss_pred EEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEecccc
Confidence 3455567889999999999888899999999999999543221 2225889999999999999
Q ss_pred -CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc
Q 001248 431 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1114)
Q Consensus 431 -dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 509 (1114)
+++.+++++-|++|++|+...+..+. ++.||...|...+|+|.... +++++|.|+++++||++.......+..|.
T Consensus 115 ~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah~ 190 (311)
T KOG0277|consen 115 VRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAHN 190 (311)
T ss_pred ccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEecc
Confidence 67778888999999999998877666 79999999999999998777 79999999999999998655555589999
Q ss_pred cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
..|.++.|+... ..++++|+.|+.|+.||++..+ ++..+.+|+-.|..+.+||... ..
T Consensus 191 ~Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--------------------~l 249 (311)
T KOG0277|consen 191 SEILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--------------------SL 249 (311)
T ss_pred ceeEeecccccC-CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--------------------hH
Confidence 999999997554 4799999999999999999865 4557788888899999888765 35
Q ss_pred EEEEeCCCeEEEEECCCc-ceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEc
Q 001248 589 FLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~ 647 (1114)
|++++.|-+++|||...+ ..+.+...| ...+..+.||+ ++.++++.+.|+.+.||+.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence 899999999999998743 445555555 44688899998 7889999999999999974
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.5e-25 Score=253.74 Aligned_cols=280 Identities=21% Similarity=0.311 Sum_probs=223.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEe--cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~--~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
++..|..+..+|||.. +|||+ .||.++||+.+.=-. ..+.++.. .+.....+..|.+.|+|+.|||||+|
T Consensus 12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCcee-EecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 3456899999999996 99999 899999999754110 00111111 22223356789999999999999999
Q ss_pred EEEEeCCCeEEEEEccC----------C-----ceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC
Q 001248 435 FGVAYSRHIVQIYSYHG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~----------~-----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 499 (1114)
||+|++|+.|.||.... | +..+....+.+|...|..++|+|++. ++++++.|++|.|||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999872 0 12335567899999999999999999 8999999999999999999
Q ss_pred cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC------CCeeEEEEEecCCCe------
Q 001248 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGTR------ 567 (1114)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~------ 567 (1114)
+.+.++.+|.+.|..+.|. |-|+++++-+.|++|++|++.+-+....+..+ ...+..+.|||||.+
T Consensus 162 ~~~~vl~~H~s~VKGvs~D--P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWD--PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEEC--CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999985 45689999999999999997765555444433 336788999999983
Q ss_pred --------------------EEeeecccceeEEEecCC------C-------C----EEEEEeCCCeEEEEECCCcceEE
Q 001248 568 --------------------TYQGFRKRSLGVVQFDTT------K-------N----RFLAAGDDFSIKFWDMDSVQLLT 610 (1114)
Q Consensus 568 --------------------~~~~~~~~~v~~~~~~~~------~-------~----~l~~~~~dg~i~iwd~~~~~~~~ 610 (1114)
.+.||+. .+.++.|+|. . + .+++|+.|++|.||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 3445555 8889999873 1 1 56779999999999998777766
Q ss_pred EeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 611 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 611 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
....-. ...|..++|+|||..|++++.||+|.++.+...
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 553222 246899999999999999999999999988654
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6.5e-25 Score=212.19 Aligned_cols=248 Identities=17% Similarity=0.207 Sum_probs=194.5
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCc-ceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
.-.+.|.+++|||....++++||-||+|++|+++.. .... .....|.++|.+++||.||..
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSK 86 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCce
Confidence 367899999999977767889999999999999873 2221 246789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
+++|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+-.|+|||-|++|+.||.+...++.++. -.+.+.+
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa 161 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA 161 (347)
T ss_pred EEeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence 999999999999999998644 47789999999999887665579999999999999999999988887 5567777
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
+..-. .+++.+..++.|.+|+++.....+...... ....+++++...+....+.|+-
T Consensus 162 ~Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~Sp-------------------Lk~Q~R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 162 ADVLY----PMAVVATAERHIAVYNLENPPTEFKRIESP-------------------LKWQTRCVACFQDKDGFALGSI 218 (347)
T ss_pred hhccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCc-------------------ccceeeEEEEEecCCceEeeee
Confidence 65422 488999999999999997654333211100 1113444555555556789999
Q ss_pred CCeEEEEECCCc--ceEEEeccCCC-------CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 595 DFSIKFWDMDSV--QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 595 dg~i~iwd~~~~--~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
+|.+-|..++.+ +.-.+++.|.. .-.|++++|+|.-..|++++.||++.+||-..
T Consensus 219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 999999999886 44445555542 22477899999888999999999999998643
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=231.20 Aligned_cols=311 Identities=20% Similarity=0.256 Sum_probs=229.6
Q ss_pred CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccc
Q 001248 616 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1114)
Q Consensus 616 ~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1114)
.+...|.++++.|.|..|++|+.|.+|++||+.......+.+..
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~------------------------------------ 208 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ------------------------------------ 208 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc------------------------------------
Confidence 34567899999999999999999999999998655222221110
Q ss_pred ccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceE
Q 001248 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 775 (1114)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 775 (1114)
+ . ......|.++.|++.|..|++.+.....
T Consensus 209 -----------------------------------------------l-~--P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 209 -----------------------------------------------L-Q--PCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred -----------------------------------------------c-C--cccccccceeeecCCCCeEEEEecCcce
Confidence 0 0 1145678999999999999999999999
Q ss_pred EEEeecccccCCCCCccccccccccCCCCCc-cccccCCCCCCCCCccEEEEeeCCC-EEEEEe-CCeEEEEEcCCCcc-
Q 001248 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT- 851 (1114)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~-~~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~-dg~i~iwd~~~~~~- 851 (1114)
+|+|-.... . -....|. .+.......+|...++|.+|+|+.+ .+++++ ||++||||+...+.
T Consensus 239 kl~DRdG~~-------~-------~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 239 KLLDRDGFE-------I-------VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred eEEccCCce-------e-------eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence 998854321 1 1111222 2222223346999999999999876 455555 99999999975432
Q ss_pred cccc-----CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce---EEEeeccccc--CeeEEEEcCCCCEEEEEe
Q 001248 852 MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGHSK--RITGLAFSHALNVLVSSG 921 (1114)
Q Consensus 852 ~~~~-----~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~---~~~~l~~h~~--~V~~l~~s~d~~~l~s~s 921 (1114)
+..+ .+..-.++.++|++ |+++||+|+.||.|.+|+..+.. ....-.+|.. .|+||.||+||++|+|-+
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 2222 22334689999999 99999999999999999985532 2234466877 899999999999999999
Q ss_pred CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe-------CCeEEEEEcCCCceeeeeecCCC
Q 001248 922 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-------ETQLAIFETTKLECVKQWVPRES 994 (1114)
Q Consensus 922 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~-------d~~i~iwd~~~~~~~~~~~~~~h 994 (1114)
.|+++++||+...+.........+.. -.-+.++||||.++|++|. .+.+.+||..+.+.+..+...
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~-----~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-- 456 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTP-----FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-- 456 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCcc-----CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--
Confidence 99999999999865433222222222 2458899999999999842 357999999999988887643
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEEcC----CCeeeEEeC
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFSAA----NLKLRCRIN 1034 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~----~~~~~~~~~ 1034 (1114)
...|..+.|.|.=..|++|+.||.++||--. .|..+|..+
T Consensus 457 ~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~RGak~cv~k 500 (641)
T KOG0772|consen 457 TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESIRGAKLCVVK 500 (641)
T ss_pred CceEEEEeecchhhheeeecCCCceEEEECccccccchhheeec
Confidence 6789999999999999999999999998433 344455554
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-24 Score=211.51 Aligned_cols=240 Identities=20% Similarity=0.226 Sum_probs=202.2
Q ss_pred CCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCc--EEEEEeCCCcEEEEEcccc
Q 001248 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~la~g~~dg~v~iwd~~~~ 892 (1114)
.|...++++|+ ++.++|+|+ |.+|+|||+.....+..+-.|.+.|+++.|.+ ... .|.+|++||.|.+|+..++
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence 48999999998 688999999 99999999999999999999999999999998 543 8899999999999999999
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeC
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 972 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d 972 (1114)
+++..+++|.+.|+.++.+|.+++-++.+.|+.++.||+-+++......+.. ..+.+.|+|.|.+++++..
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEec
Confidence 9999999999999999999999999999999999999998876533222221 2356999999999999989
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceE
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1052 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1052 (1114)
..|-+|.+.+....+.+.. ...+.++.|- ++..|++|..|+.|.+||.++....+.+. +|... |- .
T Consensus 189 ~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~R-VK--~ 254 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENR-VK--D 254 (362)
T ss_pred cEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhh-ee--e
Confidence 9999999998887776642 3567777775 66788999999999999999988887776 44333 44 3
Q ss_pred EE-ecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1053 IA-AHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1053 ~~-~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+. |...++.+|+|+++||.|+|||+....
T Consensus 255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 255 IASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred eEEEecCCceEEEEeccCceEEEEEccccc
Confidence 43 333367899999999999999998773
No 100
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=2.2e-24 Score=243.87 Aligned_cols=264 Identities=14% Similarity=0.142 Sum_probs=196.8
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCCeE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 435 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 435 (1114)
|-..|....+++|+.. +++++.+.....|+...+..+. ..-+.+ ..+.....+.+|.+.|.+++|+| ++++|
T Consensus 19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~----~~~~~G--~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL----KHTDYG--KLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe----eccccc--cCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 4456677788889774 6777778888899877654321 111111 11111235789999999999999 89999
Q ss_pred EEEeCCCeEEEEEccCCce----eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccC
Q 001248 436 GVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1114)
|+|+.|++|+|||+.++.. ......+.+|...|.+++|+|++.. +|++|+.|++|+|||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 9999999999999986532 1233468899999999999998644 7999999999999999999999999999999
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
|.+++|++ +|.+|++++.|+.|++||++++.....+..|.... ...+.|.++++.+++
T Consensus 171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~--------------------~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK--------------------SQRCLWAKRKDLIIT 228 (493)
T ss_pred eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc--------------------ceEEEEcCCCCeEEE
Confidence 99999875 55899999999999999999877665555554321 122334444445665
Q ss_pred Ee----CCCeEEEEECCCcc-eEEEeccCCCCCCcCeEEEcCCCCEEEEEe-CCCcEEEEEccCCc
Q 001248 592 AG----DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGI 651 (1114)
Q Consensus 592 ~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iwd~~~~~ 651 (1114)
++ .|+.|++||+++.. .+.....+. ...+....|++++++|++++ .|+.|++||+.++.
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 44 47999999998754 333333222 23455667899999999887 59999999999873
No 101
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.1e-25 Score=238.51 Aligned_cols=255 Identities=16% Similarity=0.274 Sum_probs=215.8
Q ss_pred CCCCcceeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccC-CCCC
Q 001248 345 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVS 422 (1114)
Q Consensus 345 ~~~~~~~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-h~~~ 422 (1114)
......+..+.. +.+.|+++.|+++|++ ||+|..+|.|.|||..+.+.+.. +.+ |...
T Consensus 203 ~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~~r 262 (484)
T KOG0305|consen 203 SASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHASR 262 (484)
T ss_pred ecCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCCcCce
Confidence 334444555555 4899999999999996 99999999999999998777653 555 9999
Q ss_pred eeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce
Q 001248 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502 (1114)
Q Consensus 423 V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 502 (1114)
|.+++|+ +..+.+|+.|+.|..+|+...+.... ++.+|...|..+.|++|+. ++++|+.|+.+.|||......+
T Consensus 263 vg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 263 VGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred eEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCcccc
Confidence 9999998 77899999999999999998776543 4889999999999999999 7999999999999999888999
Q ss_pred eEeeccccCEEEEeeccCCCceEEEEEec--CCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEE
Q 001248 503 YIFEGHEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~ 580 (1114)
..+..|...|.+++|+|-.. .+||+|+. |++|++||..++..+.... ....|.++.|++..+
T Consensus 337 ~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k-------------- 400 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYK-------------- 400 (484)
T ss_pred EEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCC--------------
Confidence 99999999999999998876 48888764 9999999999766554433 345677777777765
Q ss_pred EecCCCCEEEE--EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 581 QFDTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 581 ~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.+++ |..++.|.||+..+.+.+..+.+|. ..|..++++|||..+++|+.|.++++|++-+.
T Consensus 401 -------Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 -------ELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred -------EEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 3444 4578899999999988888888774 47999999999999999999999999998664
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.5e-25 Score=236.04 Aligned_cols=275 Identities=19% Similarity=0.262 Sum_probs=228.3
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCC
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 441 (1114)
+-+.||..+ +||+|. ...|++|+..+++.... ...+...|+++.|+++|++||+|..+
T Consensus 181 nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 346788554 477664 56899999999885542 23337799999999999999999999
Q ss_pred CeEEEEEccCCceeeeeEeecc-ccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE-eeccccCEEEEeecc
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHH 519 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~ 519 (1114)
|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999877666 6777 99999999998 44 689999999999999998776655 899999999999865
Q ss_pred CCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe--CCCe
Q 001248 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFS 597 (1114)
Q Consensus 520 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~ 597 (1114)
|+.++++|+.|+.+.+||.....+...+..|...|..++|+|-.. +.|++|+ .|+.
T Consensus 312 --d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 312 --DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------GLLATGGGSADRC 369 (484)
T ss_pred --CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc--------------------CceEEcCCCcccE
Confidence 558999999999999999988899999999999999999988654 3577754 7999
Q ss_pred EEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEE--eCCCcEEEEEccCCccceeeccccccccccCCCCCCCCc
Q 001248 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1114)
Q Consensus 598 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1114)
|++||..+++.+..+.... .|.++.|++..+-|+++ ..++.|.||+..+. .....+
T Consensus 370 i~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l------------------ 427 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL------------------ 427 (484)
T ss_pred EEEEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee------------------
Confidence 9999999999998887543 59999999988777664 45678899987664 222222
Q ss_pred cchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceE
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1114)
.+|..+|.
T Consensus 428 ------------------------------------------------------------------------~gH~~RVl 435 (484)
T KOG0305|consen 428 ------------------------------------------------------------------------LGHTSRVL 435 (484)
T ss_pred ------------------------------------------------------------------------cCCcceeE
Confidence 23888999
Q ss_pred EEEEccCcceeeecccCceEEEEeec
Q 001248 756 RLIFTNSGNAILALASNAIHLLWKWQ 781 (1114)
Q Consensus 756 ~l~~s~~~~~l~~~~~dg~i~vw~~~ 781 (1114)
.++++|||..+++++.|.++++|++-
T Consensus 436 ~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 436 YLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred EEEECCCCCEEEEecccCcEEecccc
Confidence 99999999999999999999999864
No 103
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.1e-24 Score=208.44 Aligned_cols=315 Identities=16% Similarity=0.215 Sum_probs=213.5
Q ss_pred cccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCc-----eeeeeEeeccccCCeeEEEecCCCCeeEEEEecC
Q 001248 413 AALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487 (1114)
Q Consensus 413 ~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~ 487 (1114)
..++++|.+.|++++||.||++||+++.|++|+||+++.-. +++...++ +--+.++|+||-+. +++++-.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~----dhpT~V~FapDc~s-~vv~~~~ 153 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY----DHPTRVVFAPDCKS-VVVSVKR 153 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC----CCceEEEECCCcce-EEEEEcc
Confidence 33699999999999999999999999999999999998632 22222122 23578999999986 5666666
Q ss_pred CCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCe
Q 001248 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1114)
Q Consensus 488 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 567 (1114)
..++++|.+...+. ..+.-|.-.+-.+.|. ..|.-.+..+-..
T Consensus 154 g~~l~vyk~~K~~d-G~~~~~~v~~D~~~f~-------------------------------~kh~v~~i~iGiA----- 196 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTD-GSGSHHFVHIDNLEFE-------------------------------RKHQVDIINIGIA----- 196 (420)
T ss_pred CCEEEEEEeeeccc-CCCCcccccccccccc-------------------------------hhcccceEEEeec-----
Confidence 67788887543221 1111111111111110 0011111222221
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
..+.++++++.|..|.+|++. |+.+..+.... ..-...+.||+|+++++++..--|++|.+
T Consensus 197 ----------------~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq--~~n~~aavSP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 197 ----------------GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ--SSNYDAAVSPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred ----------------CCceEEEEecCCCcEEEEecC-Cceeeeecccc--ccccceeeCCCCcEEEEecCCCCceEEEE
Confidence 223368889999999999997 88888876542 24467899999999999999999999975
Q ss_pred cCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCcee
Q 001248 648 SDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSK 727 (1114)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 727 (1114)
.-++ .+ .|. ...+
T Consensus 258 ~f~k------dG--------------~fq-----------------------------------------------ev~r 270 (420)
T KOG2096|consen 258 IFTK------DG--------------TFQ-----------------------------------------------EVKR 270 (420)
T ss_pred Eecc------Cc--------------chh-----------------------------------------------hhhh
Confidence 3220 00 000 1112
Q ss_pred EEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeeccc-ccCCCCCccccccccccCCCCCc
Q 001248 728 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT-ERNSSGKATASVAPQLWQPPSGI 806 (1114)
Q Consensus 728 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~w~~~~g~ 806 (1114)
++.+ .+|...|..++|+++.+++++.+.||..+|||..-. ....+.+.+.. |.
T Consensus 271 vf~L----------------kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~----------g~ 324 (420)
T KOG2096|consen 271 VFSL----------------KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE----------GS 324 (420)
T ss_pred hhee----------------ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhc----------CC
Confidence 2222 349999999999999999999999999999998632 11122222211 11
Q ss_pred cccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCcccccc-CCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001248 807 MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 885 (1114)
Q Consensus 807 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~la~g~~dg~v~ 885 (1114)
..+. ........++++|+|+.||.+....+++|..++++..-++ ..|...|.+++|++ +|+++|+++ |..++
T Consensus 325 ---~pl~--aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vr 397 (420)
T KOG2096|consen 325 ---APLH--AAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVR 397 (420)
T ss_pred ---cchh--hcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeee
Confidence 0011 1233445899999999999999999999999998877665 46888999999999 999999887 67788
Q ss_pred EEE
Q 001248 886 IYN 888 (1114)
Q Consensus 886 iwd 888 (1114)
++.
T Consensus 398 v~~ 400 (420)
T KOG2096|consen 398 VIR 400 (420)
T ss_pred eec
Confidence 876
No 104
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8e-25 Score=211.87 Aligned_cols=251 Identities=17% Similarity=0.332 Sum_probs=213.6
Q ss_pred eeEec-cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 351 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 351 ~~~~~-~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
+.+.+ +|++.||.++--.... ++.+++.|.+-+||.+++|.++. .+.||.+.|++++|+
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~-------------------~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLA-------------------TYTGHTGSVNSIKFH 199 (481)
T ss_pred ehhhhcccccceeeehhhcCCc-ceeecccccceeEEeecccccee-------------------eecccccceeeEEec
Confidence 44444 4999999999987777 89999999999999999999987 489999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEc------cC------------------------------Cce-eeeeEeeccccCCeeEEE
Q 001248 430 PDGSLFGVAYSRHIVQIYSY------HG------------------------------GDE-VRQHLEIDAHVGGVNDIA 472 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~------~~------------------------------~~~-~~~~~~l~~h~~~V~~v~ 472 (1114)
+.+.++++++.|++..||.. .. +.. -.+...|.+|.+.|.+..
T Consensus 200 ~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d 279 (481)
T KOG0300|consen 200 NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD 279 (481)
T ss_pred cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh
Confidence 99999999999999999962 11 000 113456889999999999
Q ss_pred ecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC-CCeeeecC
Q 001248 473 FSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEA 551 (1114)
Q Consensus 473 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~ 551 (1114)
|...|+ -+++++.|.+..+||+++|+.+..+.||....+.++-++.. .++++.+.|.++++||++.. ..+..+.+
T Consensus 280 WL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VFQG 355 (481)
T KOG0300|consen 280 WLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVFQG 355 (481)
T ss_pred hhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeeecc
Confidence 999999 58999999999999999999999999999999998876654 78999999999999999853 23446788
Q ss_pred CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCc-ceEEEeccCCCCCCcCeEEEcCCC
Q 001248 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDG 630 (1114)
Q Consensus 552 ~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~d~ 630 (1114)
|...|++..|..+.+ +++|+.|.+|++||+++. .++.++... ..++.++++..+
T Consensus 356 HtdtVTS~vF~~dd~----------------------vVSgSDDrTvKvWdLrNMRsplATIRtd---S~~NRvavs~g~ 410 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR----------------------VVSGSDDRTVKVWDLRNMRSPLATIRTD---SPANRVAVSKGH 410 (481)
T ss_pred cccceeEEEEecCCc----------------------eeecCCCceEEEeeeccccCcceeeecC---CccceeEeecCC
Confidence 888888888888776 999999999999999764 456666543 358899999988
Q ss_pred CEEEEEeCCCcEEEEEccCC
Q 001248 631 CLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 631 ~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.+++.--.+..|++||+...
T Consensus 411 ~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 411 PIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred ceEEeccCCceEEEEecCCC
Confidence 89999999999999999765
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.8e-24 Score=221.17 Aligned_cols=293 Identities=16% Similarity=0.189 Sum_probs=225.6
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeee--------------Eee-ccccCCeeEEEecCCCCe
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH--------------LEI-DAHVGGVNDIAFSHPNKQ 479 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~--------------~~l-~~h~~~V~~v~~s~d~~~ 479 (1114)
+...|.-+|.+|+++||+++..+++.+++|.=|++.+|+..+.. ..- .+|...|.+++.|+||+
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk- 215 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK- 215 (479)
T ss_pred eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence 46778999999999999999999999999999999988744111 011 27888999999999999
Q ss_pred eEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEE
Q 001248 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1114)
Q Consensus 480 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 559 (1114)
+|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-... ..+++++.|+.|++|+++....+.++-+|...|.++
T Consensus 216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 89999999999999999999999999999999999986544 579999999999999999888888888899888888
Q ss_pred EEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCC
Q 001248 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639 (1114)
Q Consensus 560 ~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 639 (1114)
....-++ .+-+|+.|+++++|++.... ...+.++ ...+-|++|-.+ ..+++|+.+
T Consensus 293 daL~reR---------------------~vtVGgrDrT~rlwKi~ees-qlifrg~--~~sidcv~~In~-~HfvsGSdn 347 (479)
T KOG0299|consen 293 DALSRER---------------------CVTVGGRDRTVRLWKIPEES-QLIFRGG--EGSIDCVAFIND-EHFVSGSDN 347 (479)
T ss_pred chhcccc---------------------eEEeccccceeEEEeccccc-eeeeeCC--CCCeeeEEEecc-cceeeccCC
Confidence 7766665 24445699999999994433 2333333 346788888755 567899999
Q ss_pred CcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccccc
Q 001248 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 719 (1114)
Q Consensus 640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1114)
|.|.+|++...+.++..-..|.....
T Consensus 348 G~IaLWs~~KKkplf~~~~AHgv~~~------------------------------------------------------ 373 (479)
T KOG0299|consen 348 GSIALWSLLKKKPLFTSRLAHGVIPE------------------------------------------------------ 373 (479)
T ss_pred ceEEEeeecccCceeEeeccccccCC------------------------------------------------------
Confidence 99999998877443332222211000
Q ss_pred ccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccc
Q 001248 720 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 799 (1114)
Q Consensus 720 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 799 (1114)
. ....+...|++++..|..+.+++++.+|.|++|.+..+-.
T Consensus 374 --------------------~-----~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r-------------- 414 (479)
T KOG0299|consen 374 --------------------L-----DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR-------------- 414 (479)
T ss_pred --------------------c-----cccccccceeeeEecccCceEEecCCCCceEEEEecCCcc--------------
Confidence 0 0011336899999999999999999999999998764311
Q ss_pred cCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe
Q 001248 800 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837 (1114)
Q Consensus 800 w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 837 (1114)
....+......+.|++++|+++|+++++|.
T Consensus 415 --------~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 415 --------AINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred --------ccceeeecccccEEEEEEEccCCCEEEEec
Confidence 001111122567899999999999888875
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.8e-25 Score=237.36 Aligned_cols=372 Identities=16% Similarity=0.197 Sum_probs=265.4
Q ss_pred CCCCee---EEEEc-CCCCeEEEEeCCCeEEEEEccCCcee---eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 419 PGVSVN---RVIWS-PDGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 419 h~~~V~---~l~~s-pdg~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
|...|. ++..+ |.++||.+||.||.|++|++...... .....++.|...|+.++...+++ .|+++|.|-+|
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTV 97 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTV 97 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceE
Confidence 344455 44444 47778999999999999998754321 12346889999999999999998 69999999999
Q ss_pred EEEeCCCC--cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEE
Q 001248 492 KVWDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 492 ~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
++|+...+ -++.++..|...|.|++.- ..+..++++||.|+.|.+||+.++.....
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~--------------------- 155 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLV--------------------- 155 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhh---------------------
Confidence 99999887 6788999999999999973 44557999999999999999986432100
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
++. ..+..=++.. +....|.+++.++.|..+++|+.++.+++||.++
T Consensus 156 ----------------------~s~-n~~t~~sl~s----------G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt 202 (735)
T KOG0308|consen 156 ----------------------ASF-NNVTVNSLGS----------GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT 202 (735)
T ss_pred ----------------------hhc-cccccccCCC----------CCccceeeeecCCcceEEEecCcccceEEecccc
Confidence 000 0000001100 2245688999999999999999999999999887
Q ss_pred CccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEE
Q 001248 650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 729 (1114)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 729 (1114)
+++..+ ++
T Consensus 203 ~~kimk-Lr----------------------------------------------------------------------- 210 (735)
T KOG0308|consen 203 CKKIMK-LR----------------------------------------------------------------------- 210 (735)
T ss_pred ccceee-ee-----------------------------------------------------------------------
Confidence 732211 11
Q ss_pred EeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccc
Q 001248 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809 (1114)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 809 (1114)
T Consensus 211 -------------------------------------------------------------------------------- 210 (735)
T KOG0308|consen 211 -------------------------------------------------------------------------------- 210 (735)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 810 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 810 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
+|...|.++..+.||..+++++ ||+|++||+...+++.++..|...|.++..+| +-..+.+|+.||.|+.=|
T Consensus 211 ------GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 211 ------GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred ------ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecc
Confidence 2666677777777888888877 88899999988899999999999999999999 889999999999999999
Q ss_pred cccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEE
Q 001248 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1114)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~ 968 (1114)
+.+......+-....+|..+..+.+.+-+-+++.|+.|+-|..+- ...+++.|.+..
T Consensus 284 l~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~-----------------------~~~l~~s~~~~~ 340 (735)
T KOG0308|consen 284 LRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP-----------------------DIALSVSGDLDF 340 (735)
T ss_pred cCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcc-----------------------ccccccCCCCCc
Confidence 987432222222345576777764444446677899999997654 113444444444
Q ss_pred EEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEe
Q 001248 969 VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 969 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1033 (1114)
.+.|....+.+... ... ...+| ...|..-++-.|.+++++-...|.+.+||+-.++.+..+
T Consensus 341 ~~T~~~~~~~~~~~-tp~--~vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~ 401 (735)
T KOG0308|consen 341 FSTDSNNHSCDLTN-TPD--SVIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDF 401 (735)
T ss_pred ccccCCCccccccC-CCc--eeccC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhc
Confidence 44444444433321 000 11111 345666677789999999999999999999777665444
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.2e-23 Score=192.35 Aligned_cols=308 Identities=14% Similarity=0.133 Sum_probs=225.5
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....|.+++|.|.|...++++...+.+|.....-.....+...+.. ....+. .....|.+.|.|.+|||+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~--------pp~v~~--kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQ--------PPSVLC--KRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccC--------CCeEEe--eeccccCccEEEEEecCc
Confidence 5678999999999999999999999999764321100000000000 000111 111238899999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCcc-----ccccCCCCCCeEEEEEecC---CCcEEEEEe-CCCcEEEEEcccceEEEeec
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKT-----MATFMPPPPAATFLAFHPQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~sp~---d~~~la~g~-~dg~v~iwd~~~~~~~~~l~ 899 (1114)
|++|++|+ |.+|++.......+ -.++.-|.+.|..++|-.+ ++.+|++++ .|..|++-|..+|+....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999 89999876653322 2346778999999999642 356888765 57789999999999999999
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEE
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIF 978 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iw 978 (1114)
||.+.|.++ ++-+|-.+++|+.|.+|++||+.-...... .-..+.+.......|.+++..|.|++|+++ .|..-.+|
T Consensus 181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~-l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNT-LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeee-ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 999999876 334688999999999999999986433221 111122222223578999999999999996 78889999
Q ss_pred EcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCC
Q 001248 979 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1058 (1114)
Q Consensus 979 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1058 (1114)
|++.+..+..+. .|+..|.++.|||.-.||++++.|..|++-|+... +-..+.. ..-..|... .+.+.|+|+
T Consensus 259 dirg~r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~--~vv~ehkdk---~i~~rwh~~ 330 (350)
T KOG0641|consen 259 DIRGGRMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPI--MVVAEHKDK---AIQCRWHPQ 330 (350)
T ss_pred EeeCCceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCce--EEEEeccCc---eEEEEecCc
Confidence 999999999886 78999999999999999999999999999998632 2222210 011123333 346999997
Q ss_pred CCCeEEEEeCCCcEEEEecc
Q 001248 1059 EPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1059 d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
| --+++.+.|.++-+|.++
T Consensus 331 d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 D-FSFISSSADKTATLWALN 349 (350)
T ss_pred c-ceeeeccCcceEEEeccC
Confidence 5 568888999999999864
No 108
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.9e-24 Score=207.77 Aligned_cols=207 Identities=18% Similarity=0.208 Sum_probs=161.4
Q ss_pred ccCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 416 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 416 ~~~h~~~V~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
-...++.|.+|+||| ...++++++-|++|++|+++....... .....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 345678999999999 555666889999999999987422222 35668999999999999998 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
|+.+++ +..+..|.++|..+.|....+-..|++|+.|++|++||.+...++..+..++. ++++.
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~D-------------- 163 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAAD-------------- 163 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehh--------------
Confidence 999995 66777899999999998777667899999999999999998877776665542 22221
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
-....++.+..++.|.+|+++.+..........-.-.++|++..+|....+.|+-+|.+.|..+..+
T Consensus 164 ---------v~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 164 ---------VLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred ---------ccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 1123577888999999999977654332211111235789999998888899999999998887665
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=3.1e-24 Score=217.19 Aligned_cols=242 Identities=18% Similarity=0.294 Sum_probs=197.6
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
|...|..+.|+++...+++++.|..|+||........ .. ...|..+|+.+..+|.
T Consensus 260 h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~-------------------~~------~~~h~~~V~~ls~h~t 314 (506)
T KOG0289|consen 260 HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP-------------------TS------SRPHEEPVTGLSLHPT 314 (506)
T ss_pred cceEEEEEEeccchhheeecCCcceEEeeccccccCc-------------------cc------cccccccceeeeeccC
Confidence 6678899999999999999999999999976532110 00 1138999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccccccCC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
|.||++++ |+++.+.|+.++..+..... ..-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|.
T Consensus 315 geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk 393 (506)
T KOG0289|consen 315 GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK 393 (506)
T ss_pred CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCcee
Confidence 99999999 89999999999988776653 234589999999 999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCce
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 985 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~ 985 (1114)
.|+|+.+|-|||+++.|+.|++||++.-+.... +..... ..+..+.|.+.|.+|+.+ .+=+|++++-.+..-
T Consensus 394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt--~~l~~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKT--IQLDEK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred EEEeccCceEEEEEecCCeEEEEEehhhcccce--eecccc-----ccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 999999999999999999999999987443221 111111 258999999999999994 555676766444433
Q ss_pred eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001248 986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1114)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~ 1024 (1114)
........|.+..+.+.|..+.+++++++.|..++++.+
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 333333477889999999999999999999999888764
No 110
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=1.1e-23 Score=238.62 Aligned_cols=224 Identities=16% Similarity=0.218 Sum_probs=178.2
Q ss_pred CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce--------EEEeecccccCeeEEE
Q 001248 838 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--------VKSKLKGHSKRITGLA 909 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~--------~~~~l~~h~~~V~~l~ 909 (1114)
++.|++|+......+..+.+|...|.+++|+|+++.+||+|+.||+|+|||+.++. .+..+.+|...|++++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 57899999887777888999999999999999558999999999999999997642 3456789999999999
Q ss_pred EcCCCCE-EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceee
Q 001248 910 FSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK 987 (1114)
Q Consensus 910 ~s~d~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~ 987 (1114)
|+|++.. |++++.|++|+|||+.+++... ... +. ..|.+++|+|+|.+|++ +.|+.|++||+++++.+.
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~-----~i~-~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAF-----QIN-MP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcEEE-----EEe-cC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 9999875 5799999999999999865321 111 11 36899999999999998 579999999999999888
Q ss_pred eeecCCCCcCee-----EEEECCCCCEEEEEEcCC----eEEEEEcCC-CeeeEEeCCCcccCCCCCCCCccceEEEecC
Q 001248 988 QWVPRESSAPIT-----HATFSCDSQLVYACFLDA----TVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1057 (1114)
Q Consensus 988 ~~~~~~h~~~v~-----~l~~s~dg~~l~s~s~Dg----~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1057 (1114)
.+. +|.+.+. ...|++++.+|++++.|+ .|+|||+.+ ++.+..+. +..+ ..++...|.+
T Consensus 204 tl~--gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~----ld~~-----~~~L~p~~D~ 272 (568)
T PTZ00420 204 SFH--IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS----IDNA-----SAPLIPHYDE 272 (568)
T ss_pred EEe--cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE----ecCC-----ccceEEeeeC
Confidence 775 6765543 234578999999988774 799999985 55565543 1111 2333455667
Q ss_pred CCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1058 QEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1058 ~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+++.++++|+.|++|++|++..+.
T Consensus 273 ~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 273 STGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCCCEEEEEECCCeEEEEEccCCc
Confidence 678899999999999999998765
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.7e-25 Score=218.78 Aligned_cols=286 Identities=16% Similarity=0.226 Sum_probs=220.7
Q ss_pred ccCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 416 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg-~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
+.||.+.|.|+|=+|.. ..+|+|+.||.|+|||+....+.. ++..|.+.|..+++.. . .+++++.|++|+.|
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~--~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--T--SFFTVGDDKTVKQW 134 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--c--ceEEecCCcceeee
Confidence 58999999999999987 889999999999999999987776 7999999999999987 3 48999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
-+.- ..++++.+ ...+..+.-+. .+..++|+|. .|.+||.....++..+.-....+.++.|+|-..
T Consensus 135 k~~~-~p~~tilg-~s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-------- 200 (433)
T KOG0268|consen 135 KIDG-PPLHTILG-KSVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET-------- 200 (433)
T ss_pred eccC-Ccceeeec-ccccccccccc--ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc--------
Confidence 9764 46677653 34455555332 2357888775 489999987666666655555555555555443
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
..|++++.|+.|.+||++++.++..+...- .-+.++|+|.+-.++++++|..++.+|++.....+
T Consensus 201 ------------sILas~~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 201 ------------SILASCASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred ------------hheeeeccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccc
Confidence 346777799999999999999888776443 35789999988889999999999999997664333
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
...
T Consensus 266 ~v~----------------------------------------------------------------------------- 268 (433)
T KOG0268|consen 266 NVH----------------------------------------------------------------------------- 268 (433)
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 322
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
.+|...|.++.|||.|+-+++++-|.+|+||....... ..... +
T Consensus 269 -------------~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S-------------------RdiYh---t- 312 (433)
T KOG0268|consen 269 -------------KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS-------------------RDIYH---T- 312 (433)
T ss_pred -------------cccceeEEEeccCCCcchhccccccceEEEeecCCCcc-------------------hhhhh---H-
Confidence 23777899999999999999999999999998653210 00000 0
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcc
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT 851 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~ 851 (1114)
..-..|.|+.||.|.+|+++|+ |+.|++|.....+.
T Consensus 313 -kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 313 -KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred -hhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 0124588999999999999999 79999999765443
No 112
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=7.4e-24 Score=239.86 Aligned_cols=235 Identities=14% Similarity=0.191 Sum_probs=179.6
Q ss_pred EecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEccCCce-
Q 001248 377 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDE- 454 (1114)
Q Consensus 377 g~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~dg~i~iwd~~~~~~- 454 (1114)
|+.++.|.+|+......+. .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 4456677777765543322 47899999999999996 89999999999999999986432
Q ss_pred e----eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEe
Q 001248 455 V----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 530 (1114)
Q Consensus 455 ~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 530 (1114)
. .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122357899999999999999885 56899999999999999998887776 667899999865 567999999
Q ss_pred cCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCC----eEEEEECCC-
Q 001248 531 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF----SIKFWDMDS- 605 (1114)
Q Consensus 531 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~- 605 (1114)
.|+.|++||+++......+..|.+.+....+ ....|+++++++++++.++ .|++||++.
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v----------------~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNI----------------WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEE----------------EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 9999999999988777777666654432221 2233556777889887664 799999985
Q ss_pred cceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 606 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 606 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++++..+..+.....+......++|.++++|+.|+.|++|++..+
T Consensus 251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 666766655544333333334456899999999999999999765
No 113
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.3e-24 Score=222.86 Aligned_cols=268 Identities=14% Similarity=0.228 Sum_probs=217.2
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....+.|.++|+.+.+-|....|+|+++..+.|.|||+.+-...... .+.-.+...+.||...=..++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeeccccccccccc
Confidence 44567799999999999999999999999999999999764332210 001122235889999888899999
Q ss_pred -CCCeEEEEeCCCeEEEEEccCCce----eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC--CCccee
Q 001248 431 -DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQY 503 (1114)
Q Consensus 431 -dg~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~~ 503 (1114)
..-+|++++.|++|++||+..... +.....+.+|...|..++|.+-... +|++++.|+.+.|||++ +.++..
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 455789999999999999985433 5556678999999999999998877 79999999999999999 566677
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
...+|.++|+|++|++.. +.+|++|+.|++|.+||+++.. ++..+..|...|..+.|+|...
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e---------------- 329 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE---------------- 329 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC----------------
Confidence 888999999999998876 4799999999999999999875 4558888888899998888765
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCcce------------EEEeccCCCCCCcCeEEEcCCCC-EEEEEeCCCcEEEEEccC
Q 001248 583 DTTKNRFLAAGDDFSIKFWDMDSVQL------------LTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 583 ~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iwd~~~ 649 (1114)
..|++++.|+.+.+||+..-.. ...|...+|...|..+.|+|... .+++.++|+.+.||.+..
T Consensus 330 ----tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 330 ----TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ----ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 3588899999999999864221 22344556677899999999665 567789999999998764
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=210.29 Aligned_cols=201 Identities=14% Similarity=0.243 Sum_probs=171.4
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-eE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EV 894 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~-~~ 894 (1114)
|...|.+..|-..|+.+++++ |.+..+||++++..+..+.+|..+.+.++-+| ..+++++.+.|.+.++||+... ..
T Consensus 271 H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~s 349 (481)
T KOG0300|consen 271 HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQS 349 (481)
T ss_pred cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcce
Confidence 889999999999999999999 99999999999999999999999999999999 8999999999999999999853 45
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCC
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 973 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~ 973 (1114)
+..|+||.+.|+++.|..| ..+++|+.|.+|+|||+.+-.. .+.... ...++..++.+..+..++.- .+.
T Consensus 350 V~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs----plATIR----tdS~~NRvavs~g~~iIAiPhDNR 420 (481)
T KOG0300|consen 350 VAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS----PLATIR----TDSPANRVAVSKGHPIIAIPHDNR 420 (481)
T ss_pred eeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC----cceeee----cCCccceeEeecCCceEEeccCCc
Confidence 6889999999999999876 5699999999999999987332 122111 12478999999999999994 667
Q ss_pred eEEEEEcCCCceeeee--ecCCCCcCeeEEEECCCCC--EEEEEEcCCeEEEEEcCCC
Q 001248 974 QLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 974 ~i~iwd~~~~~~~~~~--~~~~h~~~v~~l~~s~dg~--~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
+|++||+......+.. ...+|...|+|.+|+.+.- -|++++.|..+.=|.+.+.
T Consensus 421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9999999877655544 3458999999999987654 3889999999999998754
No 115
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=4e-24 Score=229.14 Aligned_cols=240 Identities=18% Similarity=0.299 Sum_probs=204.1
Q ss_pred eEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeE-EEEc
Q 001248 352 TRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIWS 429 (1114)
Q Consensus 352 ~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~-l~~s 429 (1114)
.+.+. |...|..+++.+... +++++.||++++|+-..++.+.. +.+.+|.+-|.+ +++-
T Consensus 7 s~~l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICYA 67 (745)
T ss_pred EEEeccCccchheeEecCCeE--EeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccceec
Confidence 34444 999999999888774 88999999999999765554431 246678888887 8887
Q ss_pred C-CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc
Q 001248 430 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1114)
Q Consensus 430 p-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 508 (1114)
+ |+-+|++|+.|.+|.+|...+...+. +|.+|...|.++....++. ++|||-|.++++|- .+++...+.+|
T Consensus 68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~gH 139 (745)
T KOG0301|consen 68 ESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQGH 139 (745)
T ss_pred cccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCCc
Confidence 6 55669999999999999999988665 8999999999999887775 89999999999996 46777889999
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
...|+++...+. +.++||+.|++|++|.- ++...++.+|...|..+++-+++.
T Consensus 140 ~asVWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~---------------------- 192 (745)
T KOG0301|consen 140 TASVWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH---------------------- 192 (745)
T ss_pred chheeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC----------------------
Confidence 999999986544 38999999999999965 567778899999999999999876
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
+++++.||.|+.|++ +|+++..+.+| ...+.+++...++..++++++|++++||+..
T Consensus 193 flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 193 FLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 999999999999999 78888877655 5578999988889999999999999999865
No 116
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-22 Score=223.63 Aligned_cols=517 Identities=15% Similarity=0.182 Sum_probs=326.5
Q ss_pred eEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCe-eEEEEecCCCCEEEEeCCCCcce
Q 001248 424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ-LCVITCGDDKTIKVWDATNGAKQ 502 (1114)
Q Consensus 424 ~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~-~~l~s~~~d~~i~iwd~~~~~~~ 502 (1114)
..-.||+|+++++.... ..|.||...+|.++. .+.+|..++..+.+.|.... .++++++.||+|++||...+.++
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 33569999999988764 569999999999887 79999999999999987663 47889999999999999999999
Q ss_pred eEeeccccCEEEEeeccC--CCceEEEEEe-cCCeE-EEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeeccccee
Q 001248 503 YIFEGHEAPVYSVCPHHK--ENIQFIFSTA-LDGKI-KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~--~~~~~l~s~~-~d~~i-~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~ 578 (1114)
+++..+ .++.++.+.+. .. ...+..+ .|..+ .....+..+ ......-..+...-..+...+. .-.
T Consensus 96 kt~~~~-~~v~~~~~~~~~a~~-s~~~~~s~~~~~~~~~~s~~~~~-------q~~~~~~~t~~~~~~d~~~~~~--~~~ 164 (792)
T KOG1963|consen 96 KTFDNN-LPVHALVYKPAQADI-SANVYVSVEDYSILTTFSKKLSK-------QSSRFVLATFDSAKGDFLKEHQ--EPK 164 (792)
T ss_pred EEEecC-CceeEEEechhHhCc-cceeEeecccceeeeeccccccc-------ceeeeEeeeccccchhhhhhhc--CCc
Confidence 988744 33333322110 10 1122111 11111 000000000 0000000000000000001110 123
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEe--ccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceee
Q 001248 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI--DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 656 (1114)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~ 656 (1114)
++.+++.+.+ .....+..+.+|+..++...... ....|...+++.+++|.++++++|..||.|.+|.-....
T Consensus 165 ~I~~~~~ge~-~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~----- 238 (792)
T KOG1963|consen 165 SIVDNNSGEF-KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS----- 238 (792)
T ss_pred cEEEcCCceE-EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc-----
Confidence 4555555554 44445667889998775511111 111233447899999999999999999999999632210
Q ss_pred ccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCC
Q 001248 657 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 736 (1114)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~ 736 (1114)
.. +...++.-|
T Consensus 239 --~~------------------------------------------------------------~~t~t~lHW------- 249 (792)
T KOG1963|consen 239 --DD------------------------------------------------------------SETCTLLHW------- 249 (792)
T ss_pred --cc------------------------------------------------------------cccceEEEe-------
Confidence 00 000122223
Q ss_pred CccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCC
Q 001248 737 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 816 (1114)
Q Consensus 737 ~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~ 816 (1114)
|...|.+++|+++|.+|++|+.+|.+.+|.+.++ . ...++.
T Consensus 250 -------------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~----------------------~--kqfLPR-- 290 (792)
T KOG1963|consen 250 -------------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG----------------------K--KQFLPR-- 290 (792)
T ss_pred -------------cccccceeEEecCCceEeecccceEEEEEeecCC----------------------C--cccccc--
Confidence 6789999999999999999999999999877532 2 111222
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCC-----------CCCeEEEEEecCCCcEEEEEeCCCcE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-----------PPAATFLAFHPQDNNIIAIGMDDSSI 884 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~l~~sp~d~~~la~g~~dg~v 884 (1114)
..++|..+.+|||+.+.+... |+.|.+....+.....++.+. .+-.+.++++| ..+.++..+..|.|
T Consensus 291 Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~v 369 (792)
T KOG1963|consen 291 LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHV 369 (792)
T ss_pred cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceE
Confidence 578899999999999888777 999999988776655554432 23367788999 77788888999999
Q ss_pred EEEEcccceEEEeec-----------ccccCeeEEEEcCCCCEEEEEeC--------CC--cEEEEeCCCCccccccccc
Q 001248 885 QIYNVRVDEVKSKLK-----------GHSKRITGLAFSHALNVLVSSGA--------DS--QLCVWSSDGWEKQKNRFLQ 943 (1114)
Q Consensus 885 ~iwd~~~~~~~~~l~-----------~h~~~V~~l~~s~d~~~l~s~s~--------D~--~v~iwd~~~~~~~~~~~~~ 943 (1114)
.+||+.+.+.+..+. .+.-.|++++.+-.|.+++|.-. || .+++|-.......-.....
T Consensus 370 Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~ 449 (792)
T KOG1963|consen 370 QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK 449 (792)
T ss_pred EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE
Confidence 999999877665542 13345788888888999998632 33 4789987765543322223
Q ss_pred cCCCCCCCCCCceEEEE-ccCCc-EEEE-EeCCeEEEEEcCCCcee--------eeeecCCCCcCeeEEEECCCCCEEEE
Q 001248 944 IPTGRTPTAQSDTRVQF-HQDQI-HFLV-VHETQLAIFETTKLECV--------KQWVPRESSAPITHATFSCDSQLVYA 1012 (1114)
Q Consensus 944 ~~~~~~~~~~~i~~v~f-spdg~-~l~~-~~d~~i~iwd~~~~~~~--------~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1114)
+...|.. .....+| ++... .+++ +.||.+++|-....+-+ ......-|..++++++||.||..|++
T Consensus 450 I~~PH~~---~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~ 526 (792)
T KOG1963|consen 450 INNPHGN---AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV 526 (792)
T ss_pred EecCCCc---eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE
Confidence 3333322 3333333 33332 5555 69999999988433211 11112246889999999999977765
Q ss_pred EEcCCeEEEEEcCC-CeeeEEeCCCcccCCCCCCCCccceEEEecCC-CCCeEEEEeCCCcEEEEeccCCCCcc
Q 001248 1013 CFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1013 ~s~Dg~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-d~~~l~s~~~Dg~v~vW~i~~~~~~~ 1084 (1114)
+ .|++|.+||..+ .++.+... ....+.+ .+.|..+ .....++....+.+.+|++.+..-.|
T Consensus 527 s-~~~~Itiwd~~~~~~l~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 527 S-FDDTITIWDYDTKNELLCTEG-SRNWPIA---------ELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred e-cCCEEEEecCCChhhhhcccc-ccccchH---------hHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 4 689999999999 55555444 2222222 1222210 12234455568899999999988666
No 117
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=213.15 Aligned_cols=281 Identities=20% Similarity=0.282 Sum_probs=227.2
Q ss_pred CeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe
Q 001248 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546 (1114)
Q Consensus 467 ~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 546 (1114)
.+.++...+... .+++|+.|.++.++|..+++.+.+++||...|+.+.+++.. ..+++++.|..|++|........
T Consensus 221 gi~ald~~~s~~--~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 221 GITALDIIPSSS--KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CeeEEeecCCCC--cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--hheeecCCcceEEeeccccccCc
Confidence 577788877744 68999999999999999999999999999999999987765 58999999999999998877766
Q ss_pred eeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEE
Q 001248 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF 626 (1114)
Q Consensus 547 ~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 626 (1114)
.....|..+|+.+...|.| .||++++.|++..+.|++++..+...........+++.+|
T Consensus 297 ~~~~~h~~~V~~ls~h~tg---------------------eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~f 355 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTG---------------------EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAF 355 (506)
T ss_pred cccccccccceeeeeccCC---------------------cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeE
Confidence 6666666666665555554 5899999999999999999998888766544456899999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCC
Q 001248 627 NKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG 706 (1114)
Q Consensus 627 s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1114)
+|||.++.+|+.||.++|||+.++. ....
T Consensus 356 HpDgLifgtgt~d~~vkiwdlks~~-~~a~-------------------------------------------------- 384 (506)
T KOG0289|consen 356 HPDGLIFGTGTPDGVVKIWDLKSQT-NVAK-------------------------------------------------- 384 (506)
T ss_pred cCCceEEeccCCCceEEEEEcCCcc-cccc--------------------------------------------------
Confidence 9999999999999999999987661 1111
Q ss_pred CccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccC
Q 001248 707 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN 786 (1114)
Q Consensus 707 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 786 (1114)
T Consensus 385 -------------------------------------------------------------------------------- 384 (506)
T KOG0289|consen 385 -------------------------------------------------------------------------------- 384 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCC-CCCeEE
Q 001248 787 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATF 864 (1114)
Q Consensus 787 ~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~-~~~i~~ 864 (1114)
+. +|.++|.+++|+.||-|||++. |+.|++||++..+...++... ..++.+
T Consensus 385 -------------------------Fp--ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s 437 (506)
T KOG0289|consen 385 -------------------------FP--GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNS 437 (506)
T ss_pred -------------------------CC--CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccccee
Confidence 11 1666777777777777777777 566888887766666665433 237999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEcc--cceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 865 LAFHPQDNNIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 865 l~~sp~d~~~la~g~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
+.|.+ .|.+|++++.|=+|++++-. .+.++..+..|.+..+++.|....++++++|.|..++++.+
T Consensus 438 ~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 438 LSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEcC-CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999 89999999888666666633 46788899999999999999999999999999999988754
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.5e-23 Score=224.87 Aligned_cols=276 Identities=14% Similarity=0.235 Sum_probs=224.4
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccE-EEE
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC-FAL 826 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~-v~~ 826 (1114)
.+|...|..+++.+.. .+++++.||++++|+-..... .-...+. +|.+.|.+ +++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~---------------------l~~~~~~--~~~g~i~~~i~y 66 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY---------------------LETHAFE--GPKGFIANSICY 66 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc---------------------ccceecc--cCcceeecccee
Confidence 4688889888877665 589999999999997532111 0001111 25555555 777
Q ss_pred ee-CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccC
Q 001248 827 SK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR 904 (1114)
Q Consensus 827 s~-d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~ 904 (1114)
-+ ++-.+++|+ |.+|.+|......++.++.+|...|.+++... ++. +++|+.|.++++|-. +++...+.+|...
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~as 142 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTAS 142 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchh
Confidence 65 444577777 99999999999999999999999999999776 565 999999999999976 4667779999999
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCc
Q 001248 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 984 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~ 984 (1114)
|+++++-|++ .++|||.|.+|++|.-.+ .++.+.+|.. .|+.+++-+++.+|-++.||.|+.|++ +|+
T Consensus 143 VWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge 210 (745)
T KOG0301|consen 143 VWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DGE 210 (745)
T ss_pred eeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cCc
Confidence 9999999987 899999999999998755 6788888875 899999999999999999999999999 788
Q ss_pred eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEE
Q 001248 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1064 (1114)
Q Consensus 985 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~ 1064 (1114)
++.... +|..-|+++...++++.++++++|++++||+.. ++...+. +|. ..++ ++.+.+ +| -|+
T Consensus 211 ~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPt----tsiW--sa~~L~-Ng-DIv 274 (745)
T KOG0301|consen 211 VLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPT----TSIW--SAKVLL-NG-DIV 274 (745)
T ss_pred eeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCc----cceE--EEEEee-CC-CEE
Confidence 877765 999999999999999999999999999999987 5565555 332 2355 666665 23 488
Q ss_pred EEeCCCcEEEEeccC
Q 001248 1065 LGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1065 s~~~Dg~v~vW~i~~ 1079 (1114)
+|++||-||||....
T Consensus 275 vg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 275 VGGSDGRVRVFTVDK 289 (745)
T ss_pred EeccCceEEEEEecc
Confidence 899999999999873
No 119
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.6e-24 Score=214.28 Aligned_cols=243 Identities=17% Similarity=0.237 Sum_probs=194.8
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
.+-+|.+.|.|++=+|..--.+|+|+.||.|+|||+...+++. .+..|.+.|..|++..
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V~Gi~v~~-- 119 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLVRGICVTQ-- 119 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCceeeEEecc--
Confidence 3345999999999999884359999999999999999887765 4789999999999987
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
..+++++.|.+|+.|.+... ..+ ++.+ ...+..+.-...+. .++|||. .|.|||.+...++..+.-....|
T Consensus 120 ~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti 190 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSI 190 (433)
T ss_pred cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCce
Confidence 77889999999999998863 232 3433 34566676666666 6889886 58999999999999998888899
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
.++.|++... .+|++++.|+.|.+||++...++....... ..+.++|+|..--++++
T Consensus 191 ~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~m----------------------RTN~IswnPeafnF~~a 247 (433)
T KOG0268|consen 191 SSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILTM----------------------RTNTICWNPEAFNFVAA 247 (433)
T ss_pred eEEecCCCcc-hheeeeccCCceEEEecccCCccceeeeec----------------------cccceecCccccceeec
Confidence 9999988765 689999999999999999877665332111 22345666655568889
Q ss_pred eCCCeEEEEECCCcc-eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 593 GDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++|..++.||++... ++.....| ...|.++.|||.|+-+++|+.|.+|+||....+
T Consensus 248 ~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 248 NEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred cccccceehhhhhhcccchhhccc--ceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence 999999999987643 44455544 557999999999999999999999999988765
No 120
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.8e-22 Score=196.57 Aligned_cols=247 Identities=16% Similarity=0.268 Sum_probs=195.6
Q ss_pred eeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEE
Q 001248 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 536 (1114)
Q Consensus 457 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 536 (1114)
+...+..|.++|+++|.+ +. ++++||.|-+|+|||+.+...+..+-.|.+.|+++.|.+......|++|+.||.|.
T Consensus 35 ~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred ccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 455678999999999996 66 89999999999999999999999999999999999987665445899999999999
Q ss_pred EEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC
Q 001248 537 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG 616 (1114)
Q Consensus 537 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 616 (1114)
+|+...-.....+..|.+.|+.+++.|.|+ .-++.+.|+.++.||+-+|+.-..+....
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K---------------------LALsVg~D~~lr~WNLV~Gr~a~v~~L~~ 169 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGK---------------------LALSVGGDQVLRTWNLVRGRVAFVLNLKN 169 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCc---------------------eEEEEcCCceeeeehhhcCccceeeccCC
Confidence 999998877778888887777777766665 67889999999999999988766665443
Q ss_pred CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccc
Q 001248 617 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 696 (1114)
Q Consensus 617 ~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1114)
. ...+.|+|.|.+++.+..+ .|-+|.+.+. ..+..+.
T Consensus 170 ~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~-------------------------------------- 206 (362)
T KOG0294|consen 170 K---ATLVSWSPQGDHFVVSGRN-KIDIYQLDNA-SVFREIE-------------------------------------- 206 (362)
T ss_pred c---ceeeEEcCCCCEEEEEecc-EEEEEecccH-hHhhhhh--------------------------------------
Confidence 2 3559999999988887764 6777766544 1111110
Q ss_pred cccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEE
Q 001248 697 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 776 (1114)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~ 776 (1114)
T Consensus 207 -------------------------------------------------------------------------------- 206 (362)
T KOG0294|consen 207 -------------------------------------------------------------------------------- 206 (362)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccccc
Q 001248 777 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF 855 (1114)
Q Consensus 777 vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~ 855 (1114)
....+.|+.|. ++..|++|. |+.|.+||..+..+...+
T Consensus 207 ----------------------------------------~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~ 245 (362)
T KOG0294|consen 207 ----------------------------------------NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF 245 (362)
T ss_pred ----------------------------------------ccccceeeeec-CCceEEEecCCceEEEeccCCCccceee
Confidence 11122333332 445666666 788999999998999999
Q ss_pred CCCCCCeEEEEEe-cCCCcEEEEEeCCCcEEEEEcccc
Q 001248 856 MPPPPAATFLAFH-PQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 856 ~~~~~~i~~l~~s-p~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
.+|..+|..+.+- ..++.+|+++++||.|+|||+...
T Consensus 246 ~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 246 LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9999999999843 226789999999999999999865
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=8.8e-23 Score=209.80 Aligned_cols=271 Identities=15% Similarity=0.234 Sum_probs=205.8
Q ss_pred cccccCCCCcCCCCcCCCCCCCCCcc--eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeee
Q 001248 325 PVSFTGHSHSHSHSQAFSTPEDLPKT--VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVW 402 (1114)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~ 402 (1114)
++.|+++.. .-..+|.. .+++|.|..-|.++.+|...++ +.||+ .|.|+|||+...... .
T Consensus 393 PvpfP~dal---------~g~gIPrharq~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k--~----- 454 (705)
T KOG0639|consen 393 PVPFPPDAL---------VGPGIPRHARQINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNK--S----- 454 (705)
T ss_pred CCCCCchhh---------cCCCCCchHHhhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCC--C-----
Confidence 567777543 12334443 4567789999999999999997 88886 689999999754211 0
Q ss_pred ccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEE
Q 001248 403 DLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482 (1114)
Q Consensus 403 d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l 482 (1114)
+...--...-.+.|..+.++|||+.|++|+.-.++.|||+..... +...++..-.-..++++.+||.+ +.
T Consensus 455 -------PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vc 524 (705)
T KOG0639|consen 455 -------PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VC 524 (705)
T ss_pred -------ccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--ee
Confidence 111101223456899999999999999999999999999987542 22224444445678999999999 88
Q ss_pred EEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEe
Q 001248 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 562 (1114)
Q Consensus 483 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 562 (1114)
+++..||.|.|||+.+...++.|+||.+.+.|+.+ +.||..|.+|+.|++|+.||++.+.++...... ..|.+
T Consensus 525 FsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi--s~dGtklWTGGlDntvRcWDlregrqlqqhdF~-SQIfS---- 597 (705)
T KOG0639|consen 525 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-SQIFS---- 597 (705)
T ss_pred eeeccCCcEEEEEcccceeeecccCCCCCceeEEe--cCCCceeecCCCccceeehhhhhhhhhhhhhhh-hhhee----
Confidence 99999999999999999999999999999999986 456789999999999999999987665533221 23334
Q ss_pred cCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcE
Q 001248 563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 642 (1114)
Q Consensus 563 ~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i 642 (1114)
+.++|++.+++.|-+.+.+.+-..... ....+. -+...|.++.|.+-|+++++.+.|+.+
T Consensus 598 -----------------Lg~cP~~dWlavGMens~vevlh~skp-~kyqlh--lheScVLSlKFa~cGkwfvStGkDnlL 657 (705)
T KOG0639|consen 598 -----------------LGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLL 657 (705)
T ss_pred -----------------cccCCCccceeeecccCcEEEEecCCc-cceeec--ccccEEEEEEecccCceeeecCchhhh
Confidence 445555668999999999988876443 333333 345579999999999999999999999
Q ss_pred EEEEccCC
Q 001248 643 KILATSDG 650 (1114)
Q Consensus 643 ~iwd~~~~ 650 (1114)
..|...-|
T Consensus 658 nawrtPyG 665 (705)
T KOG0639|consen 658 NAWRTPYG 665 (705)
T ss_pred hhccCccc
Confidence 99977655
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.6e-24 Score=197.83 Aligned_cols=256 Identities=18% Similarity=0.235 Sum_probs=205.7
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC--CCCe
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~ 434 (1114)
|++.|-.+...--|++ |||++.|++|+|+.+..+.... ....|.||.++|+.++|.. -|.+
T Consensus 10 H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 8888998988889997 9999999999999998765321 1125899999999999987 8999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-c--ceeEeeccccC
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-A--KQYIFEGHEAP 511 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~--~~~~~~~h~~~ 511 (1114)
||+++.||.|.||.-.+| ...+..+...|...|++++|.|.+-.+.|++++.||.|.|.+.++. . ..+....|.-.
T Consensus 73 LAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999999999999888 4555667889999999999999988889999999999999988754 1 22345789999
Q ss_pred EEEEeeccCCC-c-----------eEEEEEecCCeEEEEEcCCCCCe--eeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 512 VYSVCPHHKEN-I-----------QFIFSTALDGKIKAWLYDNLGSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 512 v~~~~~~~~~~-~-----------~~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
|++++|.|..- | ..|++|+.|..|++|+.++..-. ..+..|.+.|..+++.|.-..
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl---------- 221 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL---------- 221 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC----------
Confidence 99999987622 1 46999999999999999876322 357889999999999886421
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCc--ceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
-..++++++.||++.||..+.. .-..++. +.-...+..++||..|++|++++.|+.+.+|.-.
T Consensus 222 -------~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 222 -------PKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred -------CceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1125999999999999986532 1111111 1223468899999999999999999999999644
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=224.29 Aligned_cols=285 Identities=16% Similarity=0.187 Sum_probs=218.9
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
.|....+.++|.|+|..|++++.||.|++|+.......| ..+. .+...|.+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P------------------~ti~------~~g~~v~~ia~-- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP------------------ETID------ISGELVSSIAC-- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC------------------chhh------ccCceeEEEee--
Confidence 478889999999999999999999999999865321111 0110 04455666655
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1114)
++.+|++++ +++|.+|...+++.-..+....-++++++|+. +|+++|.|++|-.|++-++.+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 455888888 89999999998877656666677899999999 9999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCcee
Q 001248 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV 986 (1114)
Q Consensus 908 l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~ 986 (1114)
|.|+|.+.+||+.+.||.|+||++.++....................+..++|+|+|..+++ +.|+.|++|+..+.+..
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 99999999999999999999999998654332111111111111235678999999555555 89999999999999998
Q ss_pred eeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEE
Q 001248 987 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1066 (1114)
Q Consensus 987 ~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~ 1066 (1114)
..+..+.|...+..++|||+|+|||+++.||.|.|||+++-+. +.+ ...|. +++|.|+ ++-|-.-
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~-----------~~~Vc--~~aw~p~-~n~it~~ 288 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF-----------KRAVC--CEAWKPN-ANAITLI 288 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc-----------cceeE--EEecCCC-CCeeEEE
Confidence 8888777777799999999999999999999999999997221 111 11144 7888884 5554444
Q ss_pred eCCCcEEEE
Q 001248 1067 LSDGGVHVF 1075 (1114)
Q Consensus 1067 ~~Dg~v~vW 1075 (1114)
..-|...+|
T Consensus 289 ~~~g~~~~~ 297 (933)
T KOG1274|consen 289 TALGTLGVS 297 (933)
T ss_pred eeccccccC
Confidence 444544444
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=4.5e-23 Score=211.89 Aligned_cols=282 Identities=12% Similarity=0.179 Sum_probs=223.9
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
|..-|..+.+|...+.+.+++. |.|+|||+....... .+. .+.......-|+++.+.||
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~-------------------Pvs-qLdcl~rdnyiRSckL~pd 476 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKS-------------------PVS-QLDCLNRDNYIRSCKLLPD 476 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCC-------------------ccc-cccccCcccceeeeEecCC
Confidence 7777888889888887777664 689999987532110 000 0111125677899999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
|+.|++|+ -.++.|||+...... ..+......+.+++.+| |.++.+++..||.|.|||+....+++.|+||.+.+.
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 99999999 689999999865543 33444445688899999 999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCce
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 985 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~ 985 (1114)
||..++||..|-+|+-|.+|+-||+..+...... + ....|.++-.+|.+.+|+++ .++.+.|......+.
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrqlqqh-----d----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-----D----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhhhhh-----h----hhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence 9999999999999999999999999985442211 1 11468899999999999997 567788887765444
Q ss_pred eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEE
Q 001248 986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
+..+-|.+.|.++.|++.|+++++.+.|..+-.|...-|..+.+.+ +...|. ++..+. |.++|||
T Consensus 627 ---yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVl--sCDIS~-ddkyIVT 691 (705)
T KOG0639|consen 627 ---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVL--SCDISF-DDKYIVT 691 (705)
T ss_pred ---eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcce--eeeecc-CceEEEe
Confidence 2334689999999999999999999999999999999999887655 122244 666666 5699999
Q ss_pred EeCCCcEEEEec
Q 001248 1066 GLSDGGVHVFEP 1077 (1114)
Q Consensus 1066 ~~~Dg~v~vW~i 1077 (1114)
|+.|...-|+.+
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 999998888876
No 125
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.7e-23 Score=193.92 Aligned_cols=222 Identities=20% Similarity=0.278 Sum_probs=179.6
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecC--CCCeeEEEEecCCCCEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIK 492 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~ 492 (1114)
+...|.+.|..+...--|++||+++.|++|+|+.+..+.......+|.||.++|..++|.. .|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4678999999998888899999999999999999998776667779999999999999987 677 899999999999
Q ss_pred EEeCCCCc--ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCC---eeeecCCCCeeEEEEEecC---
Q 001248 493 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSAD--- 564 (1114)
Q Consensus 493 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~--- 564 (1114)
||.-++|+ ..+....|...|++++|.|..-|-.|++++.||.|.+.+++.... ......|.-.|.++++.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99977774 345667899999999999999999999999999999999887621 2244567778899999886
Q ss_pred CCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCC----CEEEEEeCCC
Q 001248 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAVSTNDN 640 (1114)
Q Consensus 565 g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~----~~l~~~~~dg 640 (1114)
|...-++... .-..|++|+.|+.|+||+...++-+..-...+|.+.|+.++|.|.- .+|++++.||
T Consensus 164 g~~~~~~~~~----------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 164 GSLVDQGPAA----------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred ccccccCccc----------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 3211111111 0146999999999999999887533332234557789999999953 5799999999
Q ss_pred cEEEEEcc
Q 001248 641 GIKILATS 648 (1114)
Q Consensus 641 ~i~iwd~~ 648 (1114)
++.||...
T Consensus 234 ~viIwt~~ 241 (299)
T KOG1332|consen 234 TVIIWTKD 241 (299)
T ss_pred cEEEEEec
Confidence 99999765
No 126
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.1e-20 Score=209.83 Aligned_cols=513 Identities=13% Similarity=0.145 Sum_probs=317.6
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC---CeEEEE
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SLFGVA 438 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~las~ 438 (1114)
....||+|++++++. .+..|.||...+|+++. .+.+|..++..+.+.|.. .++.++
T Consensus 20 ~~avfSnD~k~l~~~--~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~ 78 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLC--TGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYLIVC 78 (792)
T ss_pred cccccccCCcEEEEe--eCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEEEEE
Confidence 456799999975543 47899999999999876 588999999999998854 467789
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecC----CCCe--------eEEEEecCC--CCEEEEeCCCC--cce
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQ--------LCVITCGDD--KTIKVWDATNG--AKQ 502 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~----d~~~--------~~l~s~~~d--~~i~iwd~~~~--~~~ 502 (1114)
+.||.|++||...+..++ ++.. ..++..+.+.| .... ..+.+.+.+ ++++-+.+.+- ...
T Consensus 79 sl~G~I~vwd~~~~~Llk---t~~~-~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~ 154 (792)
T KOG1963|consen 79 SLDGTIRVWDWSDGELLK---TFDN-NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKG 154 (792)
T ss_pred ecCccEEEecCCCcEEEE---EEec-CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccch
Confidence 999999999999988765 3322 22333333321 1110 011111111 11111111110 011
Q ss_pred eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
..+.+|.. -.++...+.. .+.....+..+.+|+..... ... .. +-..-++...+.+.++
T Consensus 155 d~~~~~~~-~~~I~~~~~g---e~~~i~~~~~~~~~~v~~~~-~~~-~~---------------~~~~~~Htf~~t~~~~ 213 (792)
T KOG1963|consen 155 DFLKEHQE-PKSIVDNNSG---EFKGIVHMCKIHIYFVPKHT-KHT-SS---------------RDITVHHTFNITCVAL 213 (792)
T ss_pred hhhhhhcC-CccEEEcCCc---eEEEEEEeeeEEEEEecccc-eee-cc---------------chhhhhhcccceeEEe
Confidence 11222322 2233333332 34444456678888876543 110 00 0011112223677888
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC--cceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccc
Q 001248 583 DTTKNRFLAAGDDFSIKFWDMDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1114)
Q Consensus 583 ~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1114)
+|.+++++++..||.|.+|.--. +.....-..|.|...|.+++|+++|.+|++|+.+|.+.+|.+.++++.+ +
T Consensus 214 spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf--L--- 288 (792)
T KOG1963|consen 214 SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF--L--- 288 (792)
T ss_pred ccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc--c---
Confidence 88888999999999999997433 3333333345666789999999999999999999999999998884211 1
Q ss_pred ccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccc
Q 001248 661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 740 (1114)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 740 (1114)
T Consensus 289 -------------------------------------------------------------------------------- 288 (792)
T KOG1963|consen 289 -------------------------------------------------------------------------------- 288 (792)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCC
Q 001248 741 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 820 (1114)
Q Consensus 741 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~ 820 (1114)
| .-...|..+.++||+.......+|+.|.+-....-+.... +.-..+.+.... ....+-
T Consensus 289 -----P--RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t--------Isgi~~~~~~~k------~~~~~l 347 (792)
T KOG1963|consen 289 -----P--RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST--------ISGIKPPTPSTK------TRPQSL 347 (792)
T ss_pred -----c--ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh--------ccCccCCCcccc------cccccc
Confidence 0 0246789999999999999999999998876543211100 000000000000 013455
Q ss_pred ccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccC-----C------CCCCeEEEEEecCCCcEEEEEe--------C
Q 001248 821 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM-----P------PPPAATFLAFHPQDNNIIAIGM--------D 880 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~-----~------~~~~i~~l~~sp~d~~~la~g~--------~ 880 (1114)
.+.++++|.-+.++-.+ .|.|.+||+-+.+.+..+. . +.-.+++++.+- .|.+++++- .
T Consensus 348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~ 426 (792)
T KOG1963|consen 348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFF 426 (792)
T ss_pred ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhcc
Confidence 67788998555555555 8999999998777665542 1 123478888888 689998864 3
Q ss_pred CC--cEEEEEcccce----EEE-eecccccCeeEEEEcCC-CC-EEEEEeCCCcEEEEeCCCCcc-----ccccccccCC
Q 001248 881 DS--SIQIYNVRVDE----VKS-KLKGHSKRITGLAFSHA-LN-VLVSSGADSQLCVWSSDGWEK-----QKNRFLQIPT 946 (1114)
Q Consensus 881 dg--~v~iwd~~~~~----~~~-~l~~h~~~V~~l~~s~d-~~-~l~s~s~D~~v~iwd~~~~~~-----~~~~~~~~~~ 946 (1114)
|| .+++|-..... +.. .-..|...+...+|.+. .. ..++++.||.++||-+...+. ..+.+..+..
T Consensus 427 ~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s 506 (792)
T KOG1963|consen 427 DGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS 506 (792)
T ss_pred CceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec
Confidence 33 56788765432 222 23468887777777543 23 799999999999999843221 1233333332
Q ss_pred CCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCC-ceeeeeecCCCCcCeeEEEECCCCC--EEEEEEcCCeEEEEE
Q 001248 947 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQ--LVYACFLDATVCVFS 1023 (1114)
Q Consensus 947 ~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~--~l~s~s~Dg~I~vwd 1023 (1114)
.|. ..+..++|+.||..|+++.++.|.+||..+. +...... .-..++..+.+..... ..+.....+.+.+|+
T Consensus 507 y~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WN 581 (792)
T KOG1963|consen 507 YHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEG--SRNWPIAELLFTAQTQNDGALVHATQQRLSVWN 581 (792)
T ss_pred ccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccc--ccccchHhHhhhcccccccceeeccCceEehHh
Confidence 233 4789999999999999999999999999883 3322221 1123344444432111 123344578899999
Q ss_pred cCCCeeeEE
Q 001248 1024 AANLKLRCR 1032 (1114)
Q Consensus 1024 ~~~~~~~~~ 1032 (1114)
+-++.+...
T Consensus 582 ll~~~l~w~ 590 (792)
T KOG1963|consen 582 LLSMSLIWN 590 (792)
T ss_pred hhhhheecc
Confidence 998887763
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=208.37 Aligned_cols=232 Identities=16% Similarity=0.164 Sum_probs=183.7
Q ss_pred eeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCe
Q 001248 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479 (1114)
Q Consensus 400 ~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~ 479 (1114)
.+|.+..+....+..++. ++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+. .+.+|-..|+|+.|+.||.
T Consensus 64 ~vw~i~k~~~~~q~~v~P---g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs- 136 (476)
T KOG0646|consen 64 HVWEILKKDQVVQYIVLP---GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS- 136 (476)
T ss_pred cccccCchhhhhhhcccc---cceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc-
Confidence 445544443333333333 489999999999999999999999999999999877 6789999999999999999
Q ss_pred eEEEEecCCCCEEEEeCC---------CCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec
Q 001248 480 LCVITCGDDKTIKVWDAT---------NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 550 (1114)
Q Consensus 480 ~~l~s~~~d~~i~iwd~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 550 (1114)
+|+|||.||.|.+|.+. +-++++.|..|.-+|+++...+.+-..+++++|.|.++++||+..+..+.++.
T Consensus 137 -~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~ 215 (476)
T KOG0646|consen 137 -HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT 215 (476)
T ss_pred -EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence 89999999999999864 34677899999999999998777666799999999999999998765444332
Q ss_pred CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCc----------------ceEEEecc
Q 001248 551 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV----------------QLLTSIDA 614 (1114)
Q Consensus 551 ~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~ 614 (1114)
. +..+.++.++|.+..+++|+++|.|.+.++..- ..+..+.+
T Consensus 216 f----------------------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G 273 (476)
T KOG0646|consen 216 F----------------------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG 273 (476)
T ss_pred c----------------------CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence 2 224555666666667888888888888776432 23445555
Q ss_pred CCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccccc
Q 001248 615 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 662 (1114)
Q Consensus 615 ~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1114)
|.....|+|++++-||.+|++|+.||.+.+||+.+. ++++.+.....
T Consensus 274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~-Q~iRtl~~~kg 320 (476)
T KOG0646|consen 274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK-QCIRTLQTSKG 320 (476)
T ss_pred ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH-HHHHHHhhhcc
Confidence 655558999999999999999999999999999887 77776654333
No 128
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=6.7e-22 Score=190.22 Aligned_cols=242 Identities=16% Similarity=0.243 Sum_probs=180.1
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-C
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-D 431 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-d 431 (1114)
....|.+.|+++...+..-+++++|+.||.|.|||++.........+ +-+ ..|. .....-.+|.-.|..+.|-| |
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeec
Confidence 34459999999999986444699999999999999986542110000 000 0011 11223578999999999999 7
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCC-eeEEEEecCCCCEEEEeCCCCcceeEeecccc
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1114)
...+.+++-|.+++|||..+-+... .| .-.+.|++-+|||-.. .-++++|..|-.|++.|+.+|.+-+++.||.+
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred CceeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 7788999999999999999866443 23 2456788888888643 33688888999999999999999999999999
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEE
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~ 590 (1114)
.|.++.|+++.+ -.|++|+.||.|++||++..
T Consensus 190 ~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRra----------------------------------------------- 221 (397)
T KOG4283|consen 190 GVLAVEWSPSSE-WVLATGSADGAIRLWDIRRA----------------------------------------------- 221 (397)
T ss_pred ceEEEEeccCce-eEEEecCCCceEEEEEeecc-----------------------------------------------
Confidence 999999998875 68999999999999999742
Q ss_pred EEeCCCeEEEEECCCcceEEEec-cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 591 AAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
.|..++.|...++....++ ...+.+.+..++|+.||.++++.+.|..+++|+..+|....
T Consensus 222 ----sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 222 ----SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred ----cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 1223333333332222222 22334579999999999999999999999999998885433
No 129
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=9.6e-22 Score=191.57 Aligned_cols=242 Identities=19% Similarity=0.206 Sum_probs=186.3
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
-.+.|..|.|+|.+.. |++++-||++++||+...+... .-.|+.++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 4688999999999997 5556799999999998875432 345888999999986 56788
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEe
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 516 (1114)
+|+.||.|+.+|+.++.... +..|..+|.||.+++... .+++||.|++|++||.+......++. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987653 778999999999998777 69999999999999998766666665 344888876
Q ss_pred eccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCC
Q 001248 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 596 (1114)
Q Consensus 517 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 596 (1114)
. .|+.|+.|+.|..+.+||+++...........- .-.++++++.|++.-+++++-||
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------------------kyqtR~v~~~pn~eGy~~sSieG 199 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------------------KYQTRCVALVPNGEGYVVSSIEG 199 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccc-------------------eeEEEEEEEecCCCceEEEeecc
Confidence 4 336899999999999999998765552221111 11334444445445688889999
Q ss_pred eEEEEECCCc----ceEEEeccCCC-------CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 597 SIKFWDMDSV----QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 597 ~i~iwd~~~~----~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.|.+=.++.. +....++.|.. .-+|++++|+|--+.|++|+.||.|.+||..+.
T Consensus 200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 9888666554 33344444421 236889999998889999999999999998766
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.8e-22 Score=191.68 Aligned_cols=295 Identities=17% Similarity=0.221 Sum_probs=218.8
Q ss_pred eeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce
Q 001248 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502 (1114)
Q Consensus 423 V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 502 (1114)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|+|.|..|++||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999866433 6889999999999999999 7999999999999999999999
Q ss_pred eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
+.+. ..++|+.+.|++...+..+++- .+..-.+-++.... -..+..++++.... .-.+..|
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~-----------h~~Lp~d~d~dln~------sas~~~f 161 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPK-----------HSVLPKDDDGDLNS------SASHGVF 161 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCc-----------eeeccCCCcccccc------ccccccc
Confidence 9887 7899999999998775555443 33323333333211 11222233332111 1112358
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccccc
Q 001248 583 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 662 (1114)
Q Consensus 583 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1114)
++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|..|+.-+.|..||.|++..-... +
T Consensus 162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~-----~--- 232 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE-----G--- 232 (405)
T ss_pred cCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc-----C---
Confidence 8889999999999999999999999988886543 246888999999999999999999999986532000 0
Q ss_pred ccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccc
Q 001248 663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 742 (1114)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 742 (1114)
.++.+ ...
T Consensus 233 -----------------------------------------------------------r~~e~-----------e~~-- 240 (405)
T KOG1273|consen 233 -----------------------------------------------------------RDGEV-----------EPE-- 240 (405)
T ss_pred -----------------------------------------------------------ccCCc-----------Chh--
Confidence 00000 000
Q ss_pred cccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCcc
Q 001248 743 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 822 (1114)
Q Consensus 743 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~ 822 (1114)
| ++-|+ -..-.-.
T Consensus 241 -------~-----------------------------------------------K~qDv-------------VNk~~Wk 253 (405)
T KOG1273|consen 241 -------H-----------------------------------------------KLQDV-------------VNKLQWK 253 (405)
T ss_pred -------H-----------------------------------------------HHHHH-------------Hhhhhhh
Confidence 0 00000 0233456
Q ss_pred EEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 823 CFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
+++||.+|.|++.++ ...++||....|.+++.+.|.. .....+.|+| -...+++- ..|.|+||....
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence 789999999999888 4679999999999999998887 5678899999 66677766 789999998653
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.5e-22 Score=201.14 Aligned_cols=249 Identities=13% Similarity=0.194 Sum_probs=194.5
Q ss_pred cccceEEEEEccCcc-eeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee
Q 001248 750 RATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
...+|.+..|.|+|. .+++++.-..++.||+...+...-.. +.+ -....+....+|+
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~---------------------~~g-~e~~~~e~FeVSh 313 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP---------------------PYG-VEEKSMERFEVSH 313 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccC---------------------CCC-cccchhheeEecC
Confidence 346789999999999 88888888999999886433221110 111 0234577889999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccccc-Cee
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RIT 906 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~-~V~ 906 (1114)
++++|+..+ .|.|.+....+++.+.+++ ..+.|..++|+. +++.|.+.+.+|.|++||+....++..+....+ .=+
T Consensus 314 d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt 391 (514)
T KOG2055|consen 314 DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT 391 (514)
T ss_pred CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence 999999998 8999999999999998887 567899999998 888888888899999999999998888864322 236
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCceEEEEccCCcEEEEE---eCCeEEEEEcCC
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTK 982 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~---~d~~i~iwd~~~ 982 (1114)
++|.|+++.+||+|+..|.|.|||.++.-... ..++..... ....|+.+.|++|+..||.+ ....+++-.+.+
T Consensus 392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN---Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 392 SLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN---LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred eeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh---hheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 78888999999999999999999976522111 111211111 12478999999999999984 566899999998
Q ss_pred CceeeeeecCC-CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001248 983 LECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 983 ~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
......|.... .-+.|+||+|||.|.+||.|..+|.|.+|.+.
T Consensus 469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 88888887542 24679999999999999999999999999864
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.1e-20 Score=208.44 Aligned_cols=205 Identities=17% Similarity=0.201 Sum_probs=147.9
Q ss_pred EEEEeeCCCEEEEE-e-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEEcccceEEEeec
Q 001248 823 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg-~v~iwd~~~~~~~~~l~ 899 (1114)
.++++|+++.++++ . ++.|++||+.+.+.+..+.. ...+.+++|+| ++.+++++..++ .+.+||..+++....+.
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~ 154 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL 154 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence 45666777665544 3 67888888887766665542 23468899999 899998888765 57788998887765543
Q ss_pred ccccCeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE--EeCCeEE
Q 001248 900 GHSKRITGLAFSHALNVLVS-SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLA 976 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~--~~d~~i~ 976 (1114)
. ...+.+++|+|++++|+. +..++.|++||+++++............+ ........++|+|+|+++++ +.++.+.
T Consensus 155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-cccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 2 234678999999998854 45699999999998654321111111000 00113357899999998655 4567899
Q ss_pred EEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeC
Q 001248 977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 977 iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+||..+++.+..+. +...+.+++|+|+|++|++++ .+|.|+|||+.+++.+.++.
T Consensus 233 v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 99999888776553 245789999999999998864 58999999999999998887
No 133
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.1e-22 Score=205.44 Aligned_cols=296 Identities=16% Similarity=0.251 Sum_probs=216.4
Q ss_pred EEecCCC-CEEEEeCCCCcceeEeecc-ccCEEEEeeccCCCceEEEEEec-CCeEEEEEcCCCCCeeeecCCCCeeEEE
Q 001248 483 ITCGDDK-TIKVWDATNGAKQYIFEGH-EAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1114)
Q Consensus 483 ~s~~~d~-~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 559 (1114)
.+++.|. ++.+||+++|....++++- ...-.++.. -++.+++++.. ...|.+|.+.............+.+.+
T Consensus 11 sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~---l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~a- 86 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA---LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHA- 86 (476)
T ss_pred eccCCCCcceeEEecCCCceeEEecCcccccchhhhh---hchhheeeecccCccccccccCchhhhhhhcccccceee-
Confidence 3444454 4999999999999888765 222222221 12246666654 457889988765444433333334444
Q ss_pred EEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCC
Q 001248 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639 (1114)
Q Consensus 560 ~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 639 (1114)
+.-+|.|.+|+.|+..|.|++|.+.+|..+..+..|- ..|+|+.|+.||.++++|+.|
T Consensus 87 --------------------l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY--Q~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 87 --------------------LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY--QSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred --------------------eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc--cceeEEEEeCCCcEEEecCCC
Confidence 4445555578888899999999999999999997664 489999999999999999999
Q ss_pred CcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccccc
Q 001248 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 719 (1114)
Q Consensus 640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 719 (1114)
|.|.+|.+.+-.. ....|.
T Consensus 145 g~V~vW~l~~lv~---a~~~~~---------------------------------------------------------- 163 (476)
T KOG0646|consen 145 GAVLVWLLTDLVS---ADNDHS---------------------------------------------------------- 163 (476)
T ss_pred ccEEEEEEEeecc---cccCCC----------------------------------------------------------
Confidence 9999998754311 000000
Q ss_pred ccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccC--cceeeecccCceEEEEeecccccCCCCCccccccc
Q 001248 720 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS--GNAILALASNAIHLLWKWQRTERNSSGKATASVAP 797 (1114)
Q Consensus 720 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 797 (1114)
-..++.| ..|.-.|+++...+. ..++++++.|.++++||+..
T Consensus 164 ---~~p~~~f------------------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~--------------- 207 (476)
T KOG0646|consen 164 ---VKPLHIF------------------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL--------------- 207 (476)
T ss_pred ---ccceeee------------------ccCcceeEEEEecCCCccceEEEecCCceEEEEEecc---------------
Confidence 0011122 237788888887664 45799999999999998863
Q ss_pred cccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCc----------------cccccCCCCC
Q 001248 798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK----------------TMATFMPPPP 860 (1114)
Q Consensus 798 ~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~----------------~~~~~~~~~~ 860 (1114)
|.++.... .+..+.+++++|-++.+.+|. +|.|.+.++.... .+..+.+|.+
T Consensus 208 -------g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~ 276 (476)
T KOG0646|consen 208 -------GVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN 276 (476)
T ss_pred -------ceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC
Confidence 33332211 577899999999999999998 8999988875322 2344677877
Q ss_pred --CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCC
Q 001248 861 --AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA 913 (1114)
Q Consensus 861 --~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 913 (1114)
.|+|++++- ||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|=
T Consensus 277 ~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 277 ESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred CcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 999999999 9999999999999999999999999998877889999999654
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1e-21 Score=188.87 Aligned_cols=307 Identities=14% Similarity=0.188 Sum_probs=220.5
Q ss_pred ccccceEEEEEcc-CcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 749 LRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 749 ~~~~~i~~l~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
.|.+.|.++.+.+ .|+++++++.||.|.|||+++.........++.. .++...-...+|...|..+.|-
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~----------~c~v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH----------KCIVAKQHENGHKYAISSAIWY 110 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe----------eeeccccCCccceeeeeeeEEe
Confidence 3788999999987 5889999999999999999875433222222111 0100011123488899999998
Q ss_pred eCC-CEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEEcccceEEEeeccccc
Q 001248 828 KND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1114)
Q Consensus 828 ~d~-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d--~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1114)
|-. -++.+++ |.+++|||..+.+....|+ -++.|.+-++||-. -.++|+|..|-+|++.|+.+|..-..+.||.+
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~ 189 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD 189 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence 844 4566666 9999999999988877776 45668887888732 35889999999999999999999999999999
Q ss_pred CeeEEEEcCCCCE-EEEEeCCCcEEEEeCCCCcccccccc--------ccCCCCCCCCCCceEEEEccCCcEEEE-EeCC
Q 001248 904 RITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFL--------QIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET 973 (1114)
Q Consensus 904 ~V~~l~~s~d~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~ 973 (1114)
.|.+|.|+|...+ |++|+.||.|++||+..-.. ...++ ...+......+.+..++|+.||.++++ +.|.
T Consensus 190 ~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg-cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG-CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred ceEEEEeccCceeEEEecCCCceEEEEEeecccc-eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 9999999998766 78999999999999986311 01111 111112223367899999999999999 7999
Q ss_pred eEEEEEcCCCcee-eeeecCCCCcC---eeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCcc
Q 001248 974 QLAIFETTKLECV-KQWVPRESSAP---ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1049 (1114)
Q Consensus 974 ~i~iwd~~~~~~~-~~~~~~~h~~~---v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1049 (1114)
.+++|+..+|+-. +.+....|... -..+. +.+...++---.|+.+.++++-.|+.+..+. +| ...+.
T Consensus 269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-------~h-~k~i~ 339 (397)
T KOG4283|consen 269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-------TH-LKRIN 339 (397)
T ss_pred ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee-------cc-cceee
Confidence 9999999888642 22221122211 11122 3444444444456899999999999998887 32 22233
Q ss_pred ceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1050 PLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1050 ~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
+..|-| +-+.+.+|+.|+++..|-+.-
T Consensus 340 --c~~~~~-~fq~~~tg~~d~ni~~w~p~l 366 (397)
T KOG4283|consen 340 --CAAYRP-DFEQCFTGDMNGNIYMWSPAL 366 (397)
T ss_pred --EEeecC-chhhhhccccCCccccccccc
Confidence 677777 577899999999999998733
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=2.7e-22 Score=213.01 Aligned_cols=435 Identities=15% Similarity=0.146 Sum_probs=274.6
Q ss_pred EEEcC---CCCeEEEEeCCCeEEEEEccCCcee---eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC
Q 001248 426 VIWSP---DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1114)
Q Consensus 426 l~~sp---dg~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 499 (1114)
..|++ ....||.+..||.|.++|......- +++.....|...|..+.|.| |+. .|++++.|.++++||+.++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeeccc
Confidence 55665 4557899999999999998753211 22345678999999999999 554 7999999999999999999
Q ss_pred cceeE--eeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 500 AKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 500 ~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
+++.. +.||.+.|.++||.+... ..+++|+.||.|.+||++-..... +. .....++..|....
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~-~e------------~~~~~~~~~~n~~p- 197 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDA-LE------------EFDNRIYGRHNTAP- 197 (720)
T ss_pred eeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhh-HH------------HHhhhhhccccCCC-
Confidence 98876 899999999999987654 689999999999999997533110 00 00000000000000
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCe---EEEcCCCCEEEEEeC-CCcEEEEEccCCccc
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTN-DNGIKILATSDGIRL 653 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~---~~~s~d~~~l~~~~~-dg~i~iwd~~~~~~~ 653 (1114)
.|.. . ....++-|-. + ...|.+ +.+..|...||+++. |+.|++||++.....
T Consensus 198 -----tpsk--p----~~kr~~k~kA-----------~--s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 198 -----TPSK--P----LKKRIRKWKA-----------A--SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred -----CCCc--h----hhcccccccc-----------c--cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 0000 0 0011111111 1 112333 556678888998887 999999999876322
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
.+.-.....
T Consensus 254 ~r~ep~~~~----------------------------------------------------------------------- 262 (720)
T KOG0321|consen 254 YRQEPRGSD----------------------------------------------------------------------- 262 (720)
T ss_pred cccCCCccc-----------------------------------------------------------------------
Confidence 211100000
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
.+... ......+.++.....|.+|++.+.|+.|+.|++......+.+.. .|.+.
T Consensus 263 --------~~~t~-skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~------------sg~~~----- 316 (720)
T KOG0321|consen 263 --------KYPTH-SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF------------SGKLN----- 316 (720)
T ss_pred --------CccCc-ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc------------cCccc-----
Confidence 00000 00234677888888999999999999999999876555443321 11111
Q ss_pred CCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcc-ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
...-..-..+||+.++++|+ |....+|.+.+.+. ...+.+|...|++++|.|..-.-+|++++|..++||++..
T Consensus 317 ----~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 317 ----SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ----ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 11111235689999999999 99999999987654 4557899999999999986556677889999999999965
Q ss_pred ce--------------EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceE
Q 001248 892 DE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957 (1114)
Q Consensus 892 ~~--------------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 957 (1114)
+- ....+++|.-.+..+.++-.+.+.... .+..++|... ..
T Consensus 393 ~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP-----------------------~s 447 (720)
T KOG0321|consen 393 GLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSP-----------------------VS 447 (720)
T ss_pred chhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCc-----------------------cc
Confidence 42 223345565555555554333322221 3334444322 33
Q ss_pred EEEccCCcEEEEE-----eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEc-----------CCeEEE
Q 001248 958 VQFHQDQIHFLVV-----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-----------DATVCV 1021 (1114)
Q Consensus 958 v~fspdg~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~-----------Dg~I~v 1021 (1114)
++..|++.-...+ ..-.|...+.+..+....-...+|-..|+...+++.+..+++.+- ++.+.+
T Consensus 448 ~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s 527 (720)
T KOG0321|consen 448 LACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNS 527 (720)
T ss_pred hhcCcCCcccccCCCcccccccceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccc
Confidence 4444444444331 112355555554444444333456667777777777777888887 788888
Q ss_pred EEcCCC
Q 001248 1022 FSAANL 1027 (1114)
Q Consensus 1022 wd~~~~ 1027 (1114)
|....-
T Consensus 528 ~~s~l~ 533 (720)
T KOG0321|consen 528 PNSSLH 533 (720)
T ss_pred cccccC
Confidence 876543
No 136
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4.7e-21 Score=186.82 Aligned_cols=283 Identities=15% Similarity=0.187 Sum_probs=209.1
Q ss_pred cCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeC
Q 001248 417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 496 (1114)
Q Consensus 417 ~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 496 (1114)
....+.|+.|.|+|.+..|++++.||++++||+....... .-.|..++.+++|.++.+ +++|+.||.|+.+|+
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDL 82 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEe
Confidence 3456799999999999999999999999999999874332 235889999999998765 899999999999999
Q ss_pred CCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccc
Q 001248 497 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1114)
Q Consensus 497 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~ 576 (1114)
.++... .+..|..+|.++...+.. ..+++||.|++|++||.+.......+.... .|.++
T Consensus 83 n~~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~----------------- 141 (323)
T KOG1036|consen 83 NTGNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCM----------------- 141 (323)
T ss_pred cCCcce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEE-----------------
Confidence 988754 455699999999976544 579999999999999998633333322222 33333
Q ss_pred eeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce-e
Q 001248 577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL-R 655 (1114)
Q Consensus 577 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~-~ 655 (1114)
+-.++.|+.|+.+..+.+||+++...........-.-.++|+++-|++.-.++++-||.|.+=.+....... +
T Consensus 142 ------~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 142 ------DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ------eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh
Confidence 334457999999999999999876544322222222357899999988888999999998775443320000 0
Q ss_pred eccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCC
Q 001248 656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 735 (1114)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 735 (1114)
.+ +|.+
T Consensus 216 ky----------------aFkC---------------------------------------------------------- 221 (323)
T KOG1036|consen 216 KY----------------AFKC---------------------------------------------------------- 221 (323)
T ss_pred ce----------------eEEe----------------------------------------------------------
Confidence 00 0000
Q ss_pred CCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCC
Q 001248 736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 815 (1114)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~ 815 (1114)
| .-+.++ .-
T Consensus 222 --------------H-------r~~~~~----------~~---------------------------------------- 230 (323)
T KOG1036|consen 222 --------------H-------RLSEKD----------TE---------------------------------------- 230 (323)
T ss_pred --------------e-------ecccCC----------ce----------------------------------------
Confidence 0 000001 10
Q ss_pred CCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC
Q 001248 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 880 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~ 880 (1114)
.-.+|.+++|+|--..||+|+ ||.|.+||+.+.+.+..+..-+..|..++|+. +|..||+|+.
T Consensus 231 -~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 231 -IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred -EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence 123578899999988999998 99999999999999999887778899999999 9999999874
No 137
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=4.1e-22 Score=204.57 Aligned_cols=233 Identities=20% Similarity=0.319 Sum_probs=182.9
Q ss_pred ceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 350 ~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
.-+++.+|.++-..++|++...-.|++|+.|++|.+||+....... ........+.+|++.|..++|+
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~------------~~~~p~~~~~~h~~~VeDV~~h 236 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED------------KVVDPKTIFSGHEDVVEDVAWH 236 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC------------ccccceEEeecCCcceehhhcc
Confidence 3457778999899999999888779999999999999998654420 0112233689999999999999
Q ss_pred C-CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeec
Q 001248 430 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEG 507 (1114)
Q Consensus 430 p-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~ 507 (1114)
+ +..++++++.|+.+.|||++++ .........+|.+.|+|++|+|-+.. +|||||.|++|++||+++- +++.++.+
T Consensus 237 ~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 237 PLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTFEG 314 (422)
T ss_pred ccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceeccC
Confidence 9 7788999999999999999964 33344467899999999999999887 7999999999999999864 56789999
Q ss_pred cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
|...|..+.|+|..+ ..|++++.|+.+.+||+..-.....-.........+ .+..|.+...|.-+.|+|...
T Consensus 315 H~dev~~V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEl-------lF~HgGH~~kV~DfsWnp~eP 386 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPEL-------LFIHGGHTAKVSDFSWNPNEP 386 (422)
T ss_pred CCcceEEEEeCCCCC-ceeEecccCCcEEEEeccccccccChhhhccCCcce-------eEEecCcccccccccCCCCCC
Confidence 999999999999876 699999999999999998655443211111111111 233444445677778888876
Q ss_pred EE-EEEeCCCeEEEEECC
Q 001248 588 RF-LAAGDDFSIKFWDMD 604 (1114)
Q Consensus 588 ~l-~~~~~dg~i~iwd~~ 604 (1114)
++ +++++|+.+.||.+.
T Consensus 387 W~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 387 WTIASVAEDNILQIWQMA 404 (422)
T ss_pred eEEEEecCCceEEEeecc
Confidence 65 557899999999975
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.6e-18 Score=191.00 Aligned_cols=254 Identities=16% Similarity=0.232 Sum_probs=204.7
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
..|+..-+.++|.|+|.. |.+++.||.|++|+....+..- . .+.-++..|.+++. ++.+
T Consensus 10 yaht~G~t~i~~d~~gef-i~tcgsdg~ir~~~~~sd~e~P-----------------~-ti~~~g~~v~~ia~--~s~~ 68 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEF-ICTCGSDGDIRKWKTNSDEEEP-----------------E-TIDISGELVSSIAC--YSNH 68 (933)
T ss_pred hhccCceEEEEEcCCCCE-EEEecCCCceEEeecCCcccCC-----------------c-hhhccCceeEEEee--cccc
Confidence 358888999999999995 8888899999999987652111 0 12226667877776 4569
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
|++|+.+++|.+|.+..++.-. .+....-++.+++|+.+|+ +++.||.|-.|++-++.+......+.+|.++|.+
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred eEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceee
Confidence 9999999999999999876443 2334456899999999999 7999999999999999999999999999999999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
+.+++ ++++|++.+.||.|++||+.++.....+..-...-.. .....+..++|+|++..++..+.
T Consensus 144 l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~-------------~~s~i~~~~aW~Pk~g~la~~~~ 208 (933)
T KOG1274|consen 144 LSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF-------------ILSRICTRLAWHPKGGTLAVPPV 208 (933)
T ss_pred eeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccc-------------cccceeeeeeecCCCCeEEeecc
Confidence 99754 5589999999999999999987665544332110000 00124455778888888999999
Q ss_pred CCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
|+.|.+|+..+......+........+.++.|+|.|+|||+++.+|.|.|||+.+
T Consensus 209 d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 209 DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 9999999999999998887666555689999999999999999999999999985
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=5.5e-20 Score=202.72 Aligned_cols=294 Identities=13% Similarity=0.138 Sum_probs=203.1
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccC
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1114)
++.+++++.|+.|++||+.+++.+. .+..|. .+.+++|+|+++. ++++++.++.|++||..+++.+..+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~~-~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVGQ-RPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEE---EEECCC-CCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence 3578899999999999999887665 455443 4678999999984 346778899999999999988877765544
Q ss_pred EEEEeeccCCCceEEE-EEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEE
Q 001248 512 VYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~ 590 (1114)
+..++|++ +++.++ +++.++.+++||+.+......+.. ...+. .++++|++.+++
T Consensus 75 ~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~---------------------~~~~~~dg~~l~ 130 (300)
T TIGR03866 75 PELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPE---------------------GMAVSPDGKIVV 130 (300)
T ss_pred ccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcc---------------------eEEECCCCCEEE
Confidence 45667654 445554 456689999999987544333321 11123 355556666777
Q ss_pred EEeCCC-eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEE-eCCCcEEEEEccCCccceeeccccccccccCC
Q 001248 591 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTFENLAYDASRTS 668 (1114)
Q Consensus 591 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1114)
+++.++ .+.+||..+++.+..+.... ...+++|+++|++|+++ ..++.|++||+.++ +....+..+
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~-------- 198 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFE-------- 198 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeec--------
Confidence 777654 57788998887766554322 35789999999988655 45899999998776 222211100
Q ss_pred CCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcc
Q 001248 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1114)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1114)
T Consensus 199 -------------------------------------------------------------------------------- 198 (300)
T TIGR03866 199 -------------------------------------------------------------------------------- 198 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
..+. .. .......++++|
T Consensus 199 ------------~~~~------~~--------------------------------------------~~~~~~~i~~s~ 216 (300)
T TIGR03866 199 ------------IPGV------HP--------------------------------------------EAVQPVGIKLTK 216 (300)
T ss_pred ------------cccc------cc--------------------------------------------ccCCccceEECC
Confidence 0000 00 001123467788
Q ss_pred CCCEEEEE--eCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEE-eCCCcEEEEEcccceEEEeecccccCe
Q 001248 829 NDSYVMSA--SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKRI 905 (1114)
Q Consensus 829 d~~~l~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g-~~dg~v~iwd~~~~~~~~~l~~h~~~V 905 (1114)
++++++++ .++.+.+||..+++....+. +...+.+++|+| ++++|+++ ..+|.|++||+.+++++..+... ...
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~ 293 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLP 293 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccc
Confidence 88875543 26789999998877665543 345789999999 88888776 56899999999999999888755 556
Q ss_pred eEEEEcC
Q 001248 906 TGLAFSH 912 (1114)
Q Consensus 906 ~~l~~s~ 912 (1114)
++++|+|
T Consensus 294 ~~~~~~~ 300 (300)
T TIGR03866 294 WGVVVRP 300 (300)
T ss_pred ceeEeCC
Confidence 8898875
No 140
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.4e-21 Score=202.86 Aligned_cols=314 Identities=16% Similarity=0.209 Sum_probs=228.5
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEE
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 537 (1114)
...+.||.+.|.+|...|.|. .|++|+.||+|+||.+.+|.|++++. ..+.|.+++|++.++..+|+.+-.+. +.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~i 468 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLI 468 (733)
T ss_pred eeeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEE
Confidence 345789999999999999999 79999999999999999999999887 56799999999998866666655444 444
Q ss_pred EEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE----eCCCeEEEEECCCcce----E
Q 001248 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA----GDDFSIKFWDMDSVQL----L 609 (1114)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~----~ 609 (1114)
-+..-+..+.... ....|.++ ..++.+..|.-..... +
T Consensus 469 vnp~~G~~~e~~~----------------------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v 514 (733)
T KOG0650|consen 469 VNPIFGDRLEVGP----------------------------------TKELLASAPNESEPDAAVVTWSRASLDELEKGV 514 (733)
T ss_pred eCccccchhhhcc----------------------------------hhhhhhcCCCccCCcccceeechhhhhhhccce
Confidence 4332221111000 00012222 2356777887542211 1
Q ss_pred EEeccCCCCCCcCeEEEcCCCCEEEEEeCC---CcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhc
Q 001248 610 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA 686 (1114)
Q Consensus 610 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1114)
...-.+ ...|..+.|+..|.||++...+ ..|.|.++.... ... .|
T Consensus 515 ~~~I~~--~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~-sQ~------------------PF----------- 562 (733)
T KOG0650|consen 515 CIVIKH--PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK-SQS------------------PF----------- 562 (733)
T ss_pred EEEEec--CCccceeeeecCCceEEEeccCCCcceEEEEeccccc-ccC------------------ch-----------
Confidence 122222 4579999999999999987654 335555543321 000 00
Q ss_pred cccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCccee
Q 001248 687 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI 766 (1114)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l 766 (1114)
....+.|.++.|.|...++
T Consensus 563 -------------------------------------------------------------~kskG~vq~v~FHPs~p~l 581 (733)
T KOG0650|consen 563 -------------------------------------------------------------RKSKGLVQRVKFHPSKPYL 581 (733)
T ss_pred -------------------------------------------------------------hhcCCceeEEEecCCCceE
Confidence 1144678999999999988
Q ss_pred eecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEE
Q 001248 767 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFN 845 (1114)
Q Consensus 767 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd 845 (1114)
++++.. .|+|||+. .+.++...++ ....|..++++|.|..|+.|+ |+.+..||
T Consensus 582 fVaTq~-~vRiYdL~----------------------kqelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~WfD 635 (733)
T KOG0650|consen 582 FVATQR-SVRIYDLS----------------------KQELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWFD 635 (733)
T ss_pred EEEecc-ceEEEehh----------------------HHHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEEE
Confidence 887765 67777765 3333333333 466789999999999999999 99999999
Q ss_pred cC-CCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc------cc---eEEEeecccccC----eeEEEEc
Q 001248 846 MM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR------VD---EVKSKLKGHSKR----ITGLAFS 911 (1114)
Q Consensus 846 ~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~------~~---~~~~~l~~h~~~----V~~l~~s 911 (1114)
+. +.+..+++..|...+++++|++ .-.++|+|+.||++.|+.-. .. -.+..+++|... |..+.|+
T Consensus 636 ldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 636 LDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH 714 (733)
T ss_pred cccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc
Confidence 97 4467788999999999999999 88899999999999998532 11 245778899876 8899999
Q ss_pred CCCCEEEEEeCCCcEEEE
Q 001248 912 HALNVLVSSGADSQLCVW 929 (1114)
Q Consensus 912 ~d~~~l~s~s~D~~v~iw 929 (1114)
|...+|++++.||+|++|
T Consensus 715 P~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 715 PRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCCceEEecCCCceEEee
Confidence 999999999999999998
No 141
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.4e-20 Score=183.13 Aligned_cols=276 Identities=13% Similarity=0.184 Sum_probs=210.9
Q ss_pred CCCcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeE
Q 001248 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1114)
Q Consensus 346 ~~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1114)
+.|.++..++.|.. -.|+.||+.|.+ ||+|..||.|.|||+.|...-+ ++.+|..+|.+
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcce-eeeeccCCcEEEEEccccchhh-------------------hhhccccceeE
Confidence 45677778888777 899999999995 9999999999999998854322 68999999999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
++||+||+.|++++.|..|.+||+..|.+++++ ....+|+.+.|.|-..+..+++ -.+..-.+-++..++. ..+
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h-~~L 144 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKH-SVL 144 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEE-EecCCcEEEEecCCce-eec
Confidence 999999999999999999999999999977643 2467999999999877644444 3344455555554321 111
Q ss_pred ec-cccC--EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCC-CeeEEEEEecCCCeEEeeecccce----
Q 001248 506 EG-HEAP--VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSL---- 577 (1114)
Q Consensus 506 ~~-h~~~--v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~~~~~~~~~~v---- 577 (1114)
.. ..+. +.+-+-.++..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++....+..+
T Consensus 145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYE 224 (405)
T ss_pred cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEe
Confidence 11 1111 111111256677999999999999999999998888777666 788889999888865554444333
Q ss_pred ----------------------------eEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 578 ----------------------------GVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 578 ----------------------------~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
..++|+.+|.++++++ .-..++||....|.+++.+.+..+ .....+.|.|
T Consensus 225 ~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~DV~whp 303 (405)
T KOG1273|consen 225 ISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLDVNWHP 303 (405)
T ss_pred hhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheeeccccc
Confidence 2378899999998877 467799999999999999977653 3567889999
Q ss_pred CCCEEEEEeCCCcEEEEEccCC
Q 001248 629 DGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 629 d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
-...+++- ..|.+++|.....
T Consensus 304 ~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 304 VRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ceeeeeec-cCCceEEEEeecc
Confidence 88777776 6799999987544
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.1e-21 Score=195.31 Aligned_cols=247 Identities=15% Similarity=0.247 Sum_probs=188.6
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC-eE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-LF 435 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l 435 (1114)
-.+.|++|.|+|... +|.+++.||+++||.++......... +.--..+|.+.+|.|+|. .+
T Consensus 212 s~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVI 273 (514)
T ss_pred CcCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEE
Confidence 357899999999999 68999999999999997543221111 112245899999999999 88
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeecccc-CCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
++++.....+.||+.+.+.. ++..+.++. ..+.....|++++ +|+..|..|.|.+-...+++.+.+++ ..+.|..
T Consensus 274 ~~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 274 FTSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSD 349 (514)
T ss_pred EecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEee
Confidence 99999999999999987744 333455554 3678889999999 79999999999999999999999887 6788999
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
++|+ .++..|++.+.+|.|.+||++...++..+...+. | .-..++.++++.+|++|+.
T Consensus 350 ~~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~-v-------------------~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 350 FTFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS-V-------------------HGTSLCISLNGSYLATGSD 407 (514)
T ss_pred EEEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCc-c-------------------ceeeeeecCCCceEEeccC
Confidence 9986 5668899999999999999998766555443322 1 1123445556668999999
Q ss_pred CCeEEEEECCC------cceEEEeccCCCCCCcCeEEEcCCCCEEEEEeC--CCcEEEEEccC
Q 001248 595 DFSIKFWDMDS------VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN--DNGIKILATSD 649 (1114)
Q Consensus 595 dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~--dg~i~iwd~~~ 649 (1114)
.|.|.|||..+ .+++..+.. -...|+++.|++|+++|+.++. +..+++-.+.+
T Consensus 408 ~GiVNIYd~~s~~~s~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 408 SGIVNIYDGNSCFASTNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred cceEEEeccchhhccCCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 99999999653 344444432 2456899999999999998876 45666665543
No 143
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=1.6e-20 Score=199.34 Aligned_cols=455 Identities=11% Similarity=0.116 Sum_probs=282.9
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc
Q 001248 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 501 (1114)
.|..++|-|||..|+.+.. ..+.|||.+.|..+. ++.+|.+.|+|++|+.||+ .+++|+.|+.|.+|+-+ -+-
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~k-lEG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSK-LEG 86 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEeccc-ccc
Confidence 8999999999999888754 459999999998777 8999999999999999999 79999999999999844 222
Q ss_pred eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
+..+ .|.+.|.|+.|+|-. ..|++++.. ..-+|..+.. .+........+.+.+
T Consensus 87 ~LkY-SH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK-----------------------~V~K~kss~R~~~Cs 139 (1081)
T KOG1538|consen 87 ILKY-SHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQK-----------------------SVSKHKSSSRIICCS 139 (1081)
T ss_pred eeee-ccCCeeeEeecCchH--HHhhhcchh-hccccChhhh-----------------------hHHhhhhheeEEEee
Confidence 3333 399999999987655 678887753 2456644321 111111222455566
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCcceEEEecc-CCCCCCcCeEEEcCCC-----CEEEEEeCCCcEEEEEccCCcccee
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDG-----CLLAVSTNDNGIKILATSDGIRLLR 655 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~d~-----~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1114)
|..||.+++.|-.+|+|.+-+. +++....+.. .+...+|.+++|+|.. ..+++.....++.++.+... . +.
T Consensus 140 WtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~-Ig 216 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-Q-IG 216 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-e-ec
Confidence 7777779999999999999975 4444444443 3345689999999953 46667777777777765432 1 11
Q ss_pred eccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCC
Q 001248 656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 735 (1114)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 735 (1114)
.-+.- .|.| -...-++++++++.|+.|+.+.+|.-+...
T Consensus 217 k~r~L-------------~FdP----------------------------~CisYf~NGEy~LiGGsdk~L~~fTR~Gvr 255 (1081)
T KOG1538|consen 217 KDRAL-------------NFDP----------------------------CCISYFTNGEYILLGGSDKQLSLFTRDGVR 255 (1081)
T ss_pred ccccC-------------CCCc----------------------------hhheeccCCcEEEEccCCCceEEEeecCeE
Confidence 00000 1111 234557789999999999999999765422
Q ss_pred CCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCC---------------------CC----
Q 001248 736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS---------------------GK---- 790 (1114)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~---------------------~~---- 790 (1114)
.... ......|..++..|+++.++.++.||+|..|++...+...- ++
T Consensus 256 LGTv--------g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrI 327 (1081)
T KOG1538|consen 256 LGTV--------GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRI 327 (1081)
T ss_pred Eeec--------cccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeee
Confidence 1111 11567899999999999999999999999999764321100 00
Q ss_pred --------------ccc---cccccccCCCCCccccccCCCC-CCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccc
Q 001248 791 --------------ATA---SVAPQLWQPPSGIMMTNDVTDS-NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 852 (1114)
Q Consensus 791 --------------~~~---~~~~~~w~~~~g~~~~~~~~~~-~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~ 852 (1114)
.++ ...+.+|...++......++-. .-.....+--+--.+..++.+.+..+..+|...-+.
T Consensus 328 kC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~- 406 (1081)
T KOG1538|consen 328 KCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE- 406 (1081)
T ss_pred eHHHHHHHHHhhhhhheecccceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhh-
Confidence 000 0122334333332211100000 000011111111234556666677777777653211
Q ss_pred cccCCCCCCeEEEEE--ecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 853 ATFMPPPPAATFLAF--HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 853 ~~~~~~~~~i~~l~~--sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
+... -.+-|.-+.. -|.+..-|+.|..||.|+-.=+...-++ -+......|.|+..+...+.||+....++..++|
T Consensus 407 ReW~-M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~Pi-Ll~~~~tAvrClDINA~R~kLAvVDD~~~c~v~D 484 (1081)
T KOG1538|consen 407 REWQ-MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPI-LLLKQATAVRCLDINASRKKLAVVDDNDTCLVYD 484 (1081)
T ss_pred hhhh-HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchh-heecccceeEEeeccCCcceEEEEccCCeEEEEE
Confidence 1110 0001111111 1224556788988887754333332222 1233456799999999999999999999999999
Q ss_pred CCCCccccccccccCCCCCCCCCCceEEEEccCCc-EEEEEeCCeEEE
Q 001248 931 SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI-HFLVVHETQLAI 977 (1114)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~-~l~~~~d~~i~i 977 (1114)
+.+++.. .+.+ .+.+++|..... +|+.+..|.+.|
T Consensus 485 I~t~elL----~QEp--------g~nSV~wNT~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 485 IDTKELL----FQEP--------GANSVAWNTQCEDMLCFTGGGYLNV 520 (1081)
T ss_pred ccCCceE----eecC--------CCceEEeeccccceEEEecCCceEE
Confidence 9996542 2221 568899987544 333344454443
No 144
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=7.1e-20 Score=194.59 Aligned_cols=253 Identities=12% Similarity=0.164 Sum_probs=194.5
Q ss_pred CceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe
Q 001248 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 439 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 439 (1114)
-|..++|-|||..|++.+ +..+.|||++.|..+. .+++|.+.|.|+|||.||+++|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 789999999999866543 5789999999998877 5899999999999999999999999
Q ss_pred CCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeecc
Q 001248 440 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 519 (1114)
Q Consensus 440 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 519 (1114)
.|+.|.||+-+-...++ -.|.+.|.||.|.|-.. .++|++.. ..-+|..+.....+ .+ ....+.+++|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh-hh-hheeEEEeee--
Confidence 99999999976544333 25999999999999998 68888753 46688865433221 11 2345556665
Q ss_pred CCCceEEEEEecCCeEEEEEcCCCCCeeeecC---CCCeeEEEEEecCCC------------------eEEeeec-----
Q 001248 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGT------------------RTYQGFR----- 573 (1114)
Q Consensus 520 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~g~------------------~~~~~~~----- 573 (1114)
..||.+++.|-.+|+|.+-+-.. +....+.. ...+|.+++|+|... +.+.|..
T Consensus 141 tnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r 219 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDR 219 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccc
Confidence 56789999999999999886543 33333333 456899999998754 1111111
Q ss_pred --ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 574 --KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 574 --~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
+-...|+.+.++|.+++.|+.|+.+.+|-. .|-.+.++... ..+|..++..|++++++.|..||+|..|++..
T Consensus 220 ~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 220 ALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 113456788899999999999999999974 56666666543 34899999999999999999999999998753
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=6.8e-20 Score=178.09 Aligned_cols=268 Identities=19% Similarity=0.376 Sum_probs=190.2
Q ss_pred ccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc----ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEE
Q 001248 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1114)
Q Consensus 462 ~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 537 (1114)
.+|.+-|.++.|.+-|+ .++||+.|++|+|||..... +....+.|.+.|..+.|.+..-|+.+++++.|+++.+
T Consensus 10 s~h~DlihdVs~D~~GR--RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGR--RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCc--eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 47889999999999999 79999999999999976443 4456788999999999998888999999999999999
Q ss_pred EEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC
Q 001248 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617 (1114)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 617 (1114)
|.-.. .....+ =+-|. ...++. ..
T Consensus 88 WEE~~----~~~~~~---------------------------------------------~~~Wv-----~~ttl~--Ds 111 (361)
T KOG2445|consen 88 WEEQE----KSEEAH---------------------------------------------GRRWV-----RRTTLV--DS 111 (361)
T ss_pred eeecc----cccccc---------------------------------------------cceeE-----EEEEee--cC
Confidence 95321 111111 11222 111222 11
Q ss_pred CCCcCeEEEcC--CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccc
Q 001248 618 LPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1114)
Q Consensus 618 ~~~v~~~~~s~--d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1114)
...|+.+.|.| -|-.|++++.||.+|||+..+..
T Consensus 112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~-------------------------------------------- 147 (361)
T KOG2445|consen 112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM-------------------------------------------- 147 (361)
T ss_pred CcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--------------------------------------------
Confidence 34688999998 57899999999999999875441
Q ss_pred ccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceE
Q 001248 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 775 (1114)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 775 (1114)
.+.-|.+.. .+..+. .|-++
T Consensus 148 -----------------------------nLs~W~Lq~-----Ei~~~~---------------~pp~~----------- 167 (361)
T KOG2445|consen 148 -----------------------------NLSQWTLQH-----EIQNVI---------------DPPGK----------- 167 (361)
T ss_pred -----------------------------ccccchhhh-----hhhhcc---------------CCccc-----------
Confidence 111122211 000000 01010
Q ss_pred EEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee---CCCEEEEEeCC------eEEEEEc
Q 001248 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSASGG------KISLFNM 846 (1114)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~---d~~~l~~~~dg------~i~iwd~ 846 (1114)
+..+..|+.|++ ...+||+|+|. .+.||..
T Consensus 168 -----------------------------------------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 168 -----------------------------------------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred -----------------------------------------ccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 223334444443 23467777754 7888876
Q ss_pred CCC----ccccccCCCCCCeEEEEEecCCC---cEEEEEeCCCcEEEEEccc--------------------ceEEEeec
Q 001248 847 MTF----KTMATFMPPPPAATFLAFHPQDN---NIIAIGMDDSSIQIYNVRV--------------------DEVKSKLK 899 (1114)
Q Consensus 847 ~~~----~~~~~~~~~~~~i~~l~~sp~d~---~~la~g~~dg~v~iwd~~~--------------------~~~~~~l~ 899 (1114)
... ..+.++.+|..+|+.++|.|.-| .+||+++.|| |+||.+.. -+.+..+.
T Consensus 207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 533 24566889999999999999544 5899999999 99999873 13456678
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+|.+.|+.+.|+-.|..|+|.|.||+|++|...-
T Consensus 286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9999999999999999999999999999997654
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2e-22 Score=216.90 Aligned_cols=232 Identities=16% Similarity=0.250 Sum_probs=203.7
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
|...+.++..-..++.+++|+ |..+-+|.+.....+..+.+|..+|.++.|++ +..+|++|+.+|+|++||++.++.+
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhh
Confidence 677788888777888999998 78888999988888888999999999999999 8999999999999999999999999
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCe
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 974 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~ 974 (1114)
+.|.||...+.+|.|+|-+.+.|+|+.|..+++||+.... |.....+|. ..+..+.|+|+|++++.+ .|..
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-----c~~~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-----CSHTYKSHT---RVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhccC-----ceeeecCCc---ceeEEEeecCCCceeeccCCcce
Confidence 9999999999999999999999999999999999998632 455555554 478899999999999995 6699
Q ss_pred EEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEE
Q 001248 975 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1054 (1114)
Q Consensus 975 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1054 (1114)
++|||...|+....|. .|...+.++.|.|..-++++|+.|++|++||+++.+++....+. ..+ |. +..
T Consensus 178 vki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~---~~~-----v~--~~~ 245 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE---TDG-----VR--SLA 245 (825)
T ss_pred eeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc---cCC-----ce--eee
Confidence 9999999999999887 78999999999999999999999999999999999999877633 222 44 899
Q ss_pred ecCCCCCeEEEEeCCC
Q 001248 1055 AHPQEPNEFALGLSDG 1070 (1114)
Q Consensus 1055 ~~~~d~~~l~s~~~Dg 1070 (1114)
|.| ++..+.+|..+.
T Consensus 246 fn~-~~~~~~~G~q~s 260 (825)
T KOG0267|consen 246 FNP-DGKIVLSGEQIS 260 (825)
T ss_pred ecC-CceeeecCchhh
Confidence 999 688888776554
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=1.4e-20 Score=200.04 Aligned_cols=290 Identities=12% Similarity=0.112 Sum_probs=205.1
Q ss_pred ceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEE
Q 001248 764 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKIS 842 (1114)
Q Consensus 764 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~ 842 (1114)
..|+.+-++|.|.++|.....+. ++...+.. . ..|...|..+.+-|....|++++ |.+++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk~--~--~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR---------------LEERQLKK--P--LAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc---------------hhhhhhcc--c--ccccceeEeeccCCCceeEEEccCCceee
Confidence 35677778899999987643332 11111111 1 13899999999999667788887 89999
Q ss_pred EEEcCCCccccc--cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce---------------------------
Q 001248 843 LFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--------------------------- 893 (1114)
Q Consensus 843 iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~--------------------------- 893 (1114)
+||+++.++... +.+|...|.+++|.|.+...+++|+.||.|.|||+.-..
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999888877 889999999999999889999999999999999985211
Q ss_pred EEEeecccccCeeE---EEEcCCCCEEEEEeC-CCcEEEEeCCCCcccc-ccccccCC--CCCCCCCCceEEEEccCCcE
Q 001248 894 VKSKLKGHSKRITG---LAFSHALNVLVSSGA-DSQLCVWSSDGWEKQK-NRFLQIPT--GRTPTAQSDTRVQFHQDQIH 966 (1114)
Q Consensus 894 ~~~~l~~h~~~V~~---l~~s~d~~~l~s~s~-D~~v~iwd~~~~~~~~-~~~~~~~~--~~~~~~~~i~~v~fspdg~~ 966 (1114)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+....... ........ .+......+.++.....|.+
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 11223345556665 666678899999988 9999999998754322 11111111 12222235566777777888
Q ss_pred EEE-EeCCeEEEEEcCCCceeeeeecCCCC--cCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCC
Q 001248 967 FLV-VHETQLAIFETTKLECVKQWVPRESS--APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1114)
Q Consensus 967 l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~--~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
|.+ +.|+.|+.|++.+...-......++. .--..-..+||+.+|++|+.|..+++|.+.+.+.--.+. + ||
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~--Gh 359 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----L--GH 359 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----h--Cc
Confidence 877 79999999999876543332222221 111223469999999999999999999998876542222 2 33
Q ss_pred CCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1044 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1044 ~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
. +.+.+++|.|.+-.-++++++|..+++|++..+-
T Consensus 360 t---~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 360 T---REVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred c---eEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 2 3344788888666668899999999999997654
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=5.9e-22 Score=213.35 Aligned_cols=205 Identities=19% Similarity=0.306 Sum_probs=181.5
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
+..|...|.|+..-..++.+++|+.|..+-+|.+..-..+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 45688899999987789999999999999999987654443 6889999999999999988 899999999999999
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeeccc
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~ 575 (1114)
++.++.++++.||...+.++.|+|.. .+.++|+.|+.+++||.+..++...+..|...+..+.|+|+|+
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr--------- 167 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR--------- 167 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc---------
Confidence 99999999999999999999987654 7899999999999999998888888877776666666666665
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 576 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+++.+++|.+++|||...|+.+..|..|.. .+..+.|+|..-+++.|+.|+++++||+++-
T Consensus 168 ------------~v~~g~ed~tvki~d~~agk~~~ef~~~e~--~v~sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 168 ------------WVASGGEDNTVKIWDLTAGKLSKEFKSHEG--KVQSLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred ------------eeeccCCcceeeeecccccccccccccccc--cccccccCchhhhhccCCCCceeeeecccee
Confidence 799999999999999999999999987644 6889999999999999999999999998654
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=9.3e-21 Score=205.99 Aligned_cols=283 Identities=15% Similarity=0.245 Sum_probs=206.9
Q ss_pred CcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEcc-CcceeeecccCceEEEEeecccccCCCCCcc
Q 001248 714 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKAT 792 (1114)
Q Consensus 714 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 792 (1114)
...++.++. ...++|.++.......+..-.-..+...-.+..+.+.. +.++|++++.+|.|.+||+.....
T Consensus 51 ~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r------- 122 (839)
T KOG0269|consen 51 INQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR------- 122 (839)
T ss_pred cceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc-------
Confidence 333444332 45566666654433333211100011122334455543 466788999999999999874211
Q ss_pred ccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC-CEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecC
Q 001248 793 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 870 (1114)
Q Consensus 793 ~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~ 870 (1114)
...+. .+. .|...+.++.|++-. .+|++|+ ||+|++||++..+-..++.+....|+.|+|+|.
T Consensus 123 ------------nk~l~-~f~--EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 123 ------------NKLLT-VFN--EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPG 187 (839)
T ss_pred ------------chhhh-Hhh--hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccC
Confidence 11111 122 289999999998755 4677888 999999999998888888888889999999998
Q ss_pred CCcEEEEEeCCCcEEEEEccc-ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCC
Q 001248 871 DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 949 (1114)
Q Consensus 871 d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 949 (1114)
.+..++++.+.|.+++||++. .++...+.+|.++|.++.|+|++.+|||||+|++|+|||+.+.+.....+++..
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi---- 263 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI---- 263 (839)
T ss_pred CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec----
Confidence 899999999999999999986 456678899999999999999999999999999999999998666554444433
Q ss_pred CCCCCceEEEEccCCcEE-EE---EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECC-CCCEEEEEEcCCeEEEEEc
Q 001248 950 PTAQSDTRVQFHQDQIHF-LV---VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSA 1024 (1114)
Q Consensus 950 ~~~~~i~~v~fspdg~~l-~~---~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~s~Dg~I~vwd~ 1024 (1114)
.++.++.|-|+..+. |+ ..|..|.|||++..-..... ...|...++.++|.. |...|.+++.||+|..-.+
T Consensus 264 ---apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t-~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 264 ---APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT-FLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred ---ceeeeeeeccCccchhhhhhccccceEEEEeecccccccee-eeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 478999999987664 44 26789999999865443332 237899999999965 5567899999998877665
Q ss_pred CCC
Q 001248 1025 ANL 1027 (1114)
Q Consensus 1025 ~~~ 1027 (1114)
.++
T Consensus 340 kna 342 (839)
T KOG0269|consen 340 KNA 342 (839)
T ss_pred hcc
Confidence 544
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.4e-19 Score=190.75 Aligned_cols=322 Identities=14% Similarity=0.266 Sum_probs=230.2
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCC--EEEEEeCCCcEEEE
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKIL 645 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~dg~i~iw 645 (1114)
++.||. +.+.++..+|.|.+|++|+.||+|+||.+.+|.++.++...+ .|.|++|+|.+. .|+++.. +.+.|.
T Consensus 395 vyrGHt-g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~-~~~~iv 469 (733)
T KOG0650|consen 395 VYRGHT-GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVG-ECVLIV 469 (733)
T ss_pred eEeccC-CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEec-CceEEe
Confidence 344444 478888999999999999999999999999999999998765 499999999664 3444444 346666
Q ss_pred EccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccccc----cc
Q 001248 646 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT----EE 721 (1114)
Q Consensus 646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~ 721 (1114)
+..-|.+..... . ...+.+ ..
T Consensus 470 np~~G~~~e~~~---t----------------------------------------------------~ell~~~~~~~~ 494 (733)
T KOG0650|consen 470 NPIFGDRLEVGP---T----------------------------------------------------KELLASAPNESE 494 (733)
T ss_pred Cccccchhhhcc---h----------------------------------------------------hhhhhcCCCccC
Confidence 544331111100 0 000111 11
Q ss_pred CCCceeEEEeccCCCCc--cccccccCccccccceEEEEEccCcceeeecccC---ceEEEEeecccccCCCCCcccccc
Q 001248 722 SNDKSKVWKLTELSEPN--QCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVA 796 (1114)
Q Consensus 722 ~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~ 796 (1114)
.+..+..|.-....... .+..+ .|...|..+.|+..|.+|++...+ ..|.|+++.....
T Consensus 495 p~~~~~~W~~~~~~e~~~~v~~~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----------- 558 (733)
T KOG0650|consen 495 PDAAVVTWSRASLDELEKGVCIVI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----------- 558 (733)
T ss_pred CcccceeechhhhhhhccceEEEE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc-----------
Confidence 23355566544222211 12222 277899999999999999987774 5677777653211
Q ss_pred ccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEE
Q 001248 797 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 876 (1114)
Q Consensus 797 ~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la 876 (1114)
... +.. ..+.|.++.|+|...+|++++...|+|||+.....+..+......|..++.+| .|.-|+
T Consensus 559 --------Q~P----F~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli 623 (733)
T KOG0650|consen 559 --------QSP----FRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLI 623 (733)
T ss_pred --------cCc----hhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEE
Confidence 011 111 45678899999999999999999999999999888888888888999999999 888899
Q ss_pred EEeCCCcEEEEEcccc-eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCc
Q 001248 877 IGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 955 (1114)
Q Consensus 877 ~g~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 955 (1114)
.|+.|+.+..||+.-. +..+.++.|...|++|+|++.-.+++||+.||++.|+--.-..- .++
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D----l~q------------ 687 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND----LLQ------------ 687 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh----hhc------------
Confidence 9999999999999754 67788999999999999999999999999999999885321000 000
Q ss_pred eEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCC----cCeeEEEECCCCCEEEEEEcCCeEEEE
Q 001248 956 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS----APITHATFSCDSQLVYACFLDATVCVF 1022 (1114)
Q Consensus 956 ~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~----~~v~~l~~s~dg~~l~s~s~Dg~I~vw 1022 (1114)
+-..+..-...+|. ..|....|.|..-+|++++.||+|++|
T Consensus 688 --------------------------npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 --------------------------NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred --------------------------CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 00000011112443 348899999999999999999999998
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=1.1e-19 Score=186.23 Aligned_cols=254 Identities=19% Similarity=0.280 Sum_probs=191.9
Q ss_pred CCCCceEEEEcCCCC-eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCCe
Q 001248 357 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~-~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 434 (1114)
+...|++++|+|... .++|+|...|+|-+||+.+.+...... .++..|.++|.+|.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence 889999999999876 789999999999999996433322111 15789999999999999 6667
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc-eeEeeccccCEE
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVY 513 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~ 513 (1114)
+.+.+.||+|++-|++++.. .....+......+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88899999999999987642 22223333455788899998888 577777777999999997655 556677889999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeee----ecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD----YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
+++++|-.. .+++++|.|++.++||++....... .-.|.. .|....|+|.+..|
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr---------------------sV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR---------------------SVNSAYFSPSGGTL 384 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccc---------------------eeeeeEEcCCCCce
Confidence 999988755 7999999999999999987544332 222333 44555555555569
Q ss_pred EEEeCCCeEEEEEC----CCcceEEEeccCCCC---CCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 590 LAAGDDFSIKFWDM----DSVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~----~~~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++.+.|..|+|||. ....+..++...... -......|.|+..++++|-.-..|-|+|-..+
T Consensus 385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 99999999999998 333444444322211 12346789999999999999889999987766
No 152
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.6e-20 Score=201.48 Aligned_cols=293 Identities=16% Similarity=0.196 Sum_probs=219.2
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee-CC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-ND 830 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~-d~ 830 (1114)
..+..+...++-..++.++.. .+.||.+....+...-.. .. +... .-...+..+.|.. +.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~--------~~---k~kq-------n~~~S~~DVkW~~~~~ 100 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNH--------RF---KTKQ-------NKFYSAADVKWGQLYS 100 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceee--------ec---cccc-------ceeeehhhcccccchh
Confidence 456677788888888877765 667777654433222111 10 0000 0112234455553 55
Q ss_pred CEEEEEe-CCeEEEEEcCC---CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee
Q 001248 831 SYVMSAS-GGKISLFNMMT---FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 831 ~~l~~~~-dg~i~iwd~~~---~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
++||+++ .|.|.+||+.. .+.+..|..|...++++.|++....+|++|+.||.|++||++..+-...+.+....|.
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR 180 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR 180 (839)
T ss_pred hhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence 6889988 89999999986 5666788999999999999998889999999999999999999998899999999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCc
Q 001248 907 GLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 984 (1114)
Q Consensus 907 ~l~~s~-d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~ 984 (1114)
.|.|+| .+..++++...|.+++||+.... .+...+..|. +.|.++.|+|++.+||+ |.|+.|+|||..+.+
T Consensus 181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~----r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPD----RCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred ceeeccCCCceEEEecCCceEEEeeccCch----hHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 999998 46789999999999999998743 3444555555 58999999999999999 699999999998765
Q ss_pred eeeeeecCCCCcCeeEEEECCCCCE-EEEEE--cCCeEEEEEcCCC-eeeEEeCCCcccCCCCCCCCccceEEEecCCCC
Q 001248 985 CVKQWVPRESSAPITHATFSCDSQL-VYACF--LDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1060 (1114)
Q Consensus 985 ~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~s--~Dg~I~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~ 1060 (1114)
....... ....+|.++.|-|+.++ ||+++ .|-.|+|||+... -+...+. .|.+. +. .++|...|.
T Consensus 254 ~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~-------eH~~~-vt--~i~W~~~d~ 322 (839)
T KOG0269|consen 254 AKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL-------EHTDS-VT--GIAWDSGDR 322 (839)
T ss_pred ccceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee-------ccCcc-cc--ceeccCCCc
Confidence 5433332 22678999999999887 55554 4788999998642 2222222 22222 44 788888778
Q ss_pred CeEEEEeCCCcEEEEeccCCC
Q 001248 1061 NEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1061 ~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
..+.+++.||+|..-.+.++.
T Consensus 323 ~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eeeEeecCccHHHHhhhhccc
Confidence 889999999999888777766
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=6.7e-19 Score=171.26 Aligned_cols=259 Identities=14% Similarity=0.235 Sum_probs=194.1
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC--CCC
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 433 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 433 (1114)
+|.+-|.|+.|.+-|++ +||++.|++|.|||......--. .. .....|.+.|..|.|.+ =|+
T Consensus 11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~-------~T--------s~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWS-------CT--------SSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceE-------Ee--------eeEEecCCcEEEEEecCccccc
Confidence 48899999999999998 99999999999999754332111 00 13578999999999976 699
Q ss_pred eEEEEeCCCeEEEEEcc------CCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce-----
Q 001248 434 LFGVAYSRHIVQIYSYH------GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----- 502 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~------~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----- 502 (1114)
.+|+++.|+++.||.-. .+.......++......|++|.|.|.-..+.+++++.||.++||+.-...-+
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 99999999999999752 1223344557778888999999999877779999999999999986543222
Q ss_pred -eEee-------ccccCEEEEeeccCCC-ceEEEEEecC-----CeEEEEEcCCCCC----eeeecCCCCeeEEEEEecC
Q 001248 503 -YIFE-------GHEAPVYSVCPHHKEN-IQFIFSTALD-----GKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSAD 564 (1114)
Q Consensus 503 -~~~~-------~h~~~v~~~~~~~~~~-~~~l~s~~~d-----~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~ 564 (1114)
..++ .+..+..|+.|+++.- ..+|+.|+.+ +.++||....... ...+..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 2222 4667788888876542 2466666665 4788998766542 2356778889999999997
Q ss_pred CCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc-----------------eEEEec-cCCCCCCcCeEEE
Q 001248 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------LLTSID-ADGGLPASPRIRF 626 (1114)
Q Consensus 565 g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~ 626 (1114)
-.+-+ ..+++++.|| |+||++.... .+..+. ..+|...|..+.|
T Consensus 235 ~Gr~y-----------------~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 235 IGRSY-----------------HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred cCCce-----------------eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence 54322 2588899999 9999987311 122221 2344568999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcc
Q 001248 627 NKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 627 s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
+-.|..|++.+.||.||+|...
T Consensus 297 NmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeeeeEEeecCCCceeeehhhh
Confidence 9999999999999999999653
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=181.06 Aligned_cols=267 Identities=15% Similarity=0.237 Sum_probs=195.2
Q ss_pred CCcceeEeccCCCCceEEEEcCCCC-eEEEEEecCCcEEEEEcCCcceeE-EeeeeeeccCCCCcccccccccCCCCCee
Q 001248 347 LPKTVTRTLNQGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLV-LRNFKVWDLGACSMPLQAALVKDPGVSVN 424 (1114)
Q Consensus 347 ~~~~~~~~~~h~~~v~~v~~spdg~-~ll~tg~~dg~v~iwd~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~h~~~V~ 424 (1114)
.|..-.....|.+.++.+.-++-|+ .++|+=+..|.|.||++...-... .....+-+ ....+...+.+|.+.=.
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence 4555566777999999999988753 357777888999999985421110 00000001 11122235789999999
Q ss_pred EEEEcC-CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC---c
Q 001248 425 RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---A 500 (1114)
Q Consensus 425 ~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~ 500 (1114)
+++||| .-..|++|..-+.|++|...+|.-......+.+|+..|-.++|||.... +|+|||.|++|+|||++.+ .
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence 999999 2334788888888999999987655444567889999999999999887 8999999999999999988 3
Q ss_pred ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC---CCeeeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
++.+ +.|.+.|+.+.|+-.. .+|++|+.||++++||++.. .++..+..|..+|+++.|+|...
T Consensus 295 ~~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~----------- 360 (440)
T KOG0302|consen 295 AVST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED----------- 360 (440)
T ss_pred eeEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC-----------
Confidence 3333 8899999999997554 49999999999999999864 34456777777777777777543
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcce----------------EEEeccCCCCCCcCeEEEcCC-CCEEEEEeCCC
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----------------LTSIDADGGLPASPRIRFNKD-GCLLAVSTNDN 640 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~dg 640 (1114)
..+++++.|.+|.+||+....- -+.+-.|.+...+..+.|++. ..++++.+-||
T Consensus 361 ---------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 361 ---------SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred ---------ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 3588899999999999853221 112233444567888999984 34667766666
Q ss_pred c
Q 001248 641 G 641 (1114)
Q Consensus 641 ~ 641 (1114)
.
T Consensus 432 f 432 (440)
T KOG0302|consen 432 F 432 (440)
T ss_pred e
Confidence 4
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=4.1e-19 Score=179.41 Aligned_cols=171 Identities=20% Similarity=0.265 Sum_probs=140.4
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
...+|..+.|.+++.-.+|||+.|..|+||-++.++.-.. .....+ ...+..|...|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~---------~~~V~y-~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG---------DMKVEY-LSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC---------ceeEEE-eecccCCcceeEEEEEcCCcCeee
Confidence 4578999999998874599999999999999976543220 000111 126899999999999999999999
Q ss_pred EEeCCCeEEEEEcc--------C-----CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee
Q 001248 437 VAYSRHIVQIYSYH--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1114)
Q Consensus 437 s~~~dg~i~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 503 (1114)
+|+++|.|.+|... + .+.......+.+|...|..++|+||+. ++++++.|.++++||+..|..+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 3 222334457889999999999999999 89999999999999999999999
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcC
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 541 (1114)
.+.+|...|..++|.+-. +++++-+.|...+.+.+.
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAK 195 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeee
Confidence 999999999999986654 799999999866666554
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=4.4e-17 Score=190.52 Aligned_cols=371 Identities=25% Similarity=0.416 Sum_probs=268.0
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcc-eeEEeeeeeeccCCCCcccccccccCCC-CCeeEEEE-c
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIW-S 429 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~-s 429 (1114)
....|...+.++.|.+.+.. ++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIK-------------------SLEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEE-------------------EEeccCCCceeeEEEEC
Confidence 44569999999999999995 7888889999999999876 322 123322 46777777 8
Q ss_pred CCCC-eEEEEeC-CCeEEEEEccC-CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC-CCCEEEEeCCCCcceeEe
Q 001248 430 PDGS-LFGVAYS-RHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 430 pdg~-~las~~~-dg~i~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~ 505 (1114)
+++. +++..+. |+.+.+|+... ..... .+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999987 44343 6788999999999999999 6777775 999999999998999999
Q ss_pred eccccCEEEEeeccCCCce-EEEEEecCCeEEEEEcCCCCCee-eecCCCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 506 EGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
.+|...|.+++|. +++. ++++++.|+.|++||........ .+..+.... .. .|+
T Consensus 195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~---------------------~~~ 250 (466)
T COG2319 195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS---------------------SFS 250 (466)
T ss_pred ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE---------------------eEC
Confidence 9999999999987 4445 55666999999999877444333 233333322 11 455
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcce-EEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccccc
Q 001248 584 TTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 662 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1114)
+++..+++++.|+.+++|+...... +..+. .+...+.++.|+|++..+++++.|+.+.+|+..+... .....
T Consensus 251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~---- 323 (466)
T COG2319 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-LSSLT---- 323 (466)
T ss_pred CCCCEEEEecCCCcEEEeeecCCCcEEEEEe--cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce-EEEee----
Confidence 5555788999999999999987665 44442 3355789999999888888899898899997655511 11000
Q ss_pred ccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccc
Q 001248 663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 742 (1114)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 742 (1114)
T Consensus 324 -------------------------------------------------------------------------------- 323 (466)
T COG2319 324 -------------------------------------------------------------------------------- 323 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCcc
Q 001248 743 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 822 (1114)
Q Consensus 743 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~ 822 (1114)
... |...+.
T Consensus 324 ----~~~-------------------------------------------------------------------~~~~~~ 332 (466)
T COG2319 324 ----LKG-------------------------------------------------------------------HEGPVS 332 (466)
T ss_pred ----ecc-------------------------------------------------------------------cCCceE
Confidence 000 222233
Q ss_pred EEEEeeCCCEEEEE-e-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEE-EeCCCcEEEEEcccceEEEeec
Q 001248 823 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~-g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
.+.+.+++..++.+ . |+.+.+|+............. ..+..+.+++ + ..+.. +..++.+.+|+...........
T Consensus 333 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (466)
T COG2319 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLD 409 (466)
T ss_pred EEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeecc
Confidence 33332122333333 2 566777777665522222211 2288889988 6 55554 8899999999999988777776
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
.+...+....+++++..+++++.++++++|+...
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 5547889999999999999999999999999987
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=3.9e-19 Score=182.12 Aligned_cols=295 Identities=19% Similarity=0.253 Sum_probs=209.0
Q ss_pred cccceEEEEEccCcc--eeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 750 RATKISRLIFTNSGN--AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
+..+|++++|.|..+ .+++|...|.|-+|++.......++ . +....|..+|.++.|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~----------------v-----~~f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG----------------V-----YLFTPHSGPVSGLKFS 243 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc----------------e-----EEeccCCccccceEec
Confidence 678999999999765 5666666799999998532211111 1 1122489999999999
Q ss_pred eCCC-EEEEEe-CCeEEEEEcCCCccccc--cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce-EEEeecccc
Q 001248 828 KNDS-YVMSAS-GGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHS 902 (1114)
Q Consensus 828 ~d~~-~l~~~~-dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~-~~~~l~~h~ 902 (1114)
|.+. .+.+.+ ||+|++-|+++...-.. +......+..+.|+. +...++.|..=|...+||+.++. ....+.-|.
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~ 322 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK 322 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhh
Confidence 8553 455555 99999999987554333 333455678889988 55666667777799999999854 467788899
Q ss_pred cCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEc
Q 001248 903 KRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 980 (1114)
Q Consensus 903 ~~V~~l~~s~d~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~ 980 (1114)
..|++|+++|-. .+|||+|.|++++|||+..-.......+... .|. ..|.++.|||+|..|++ +.|..|+|||.
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~Hr---rsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHR---RSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc-ccc---ceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 999999999965 4689999999999999987443332122222 233 37999999998877887 79999999998
Q ss_pred C----CCceeeeeecC-CCCcC--eeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEE
Q 001248 981 T----KLECVKQWVPR-ESSAP--ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1053 (1114)
Q Consensus 981 ~----~~~~~~~~~~~-~h~~~--v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1053 (1114)
. ......++.-. .+..+ .....|.||..++++|..-..|-|+|-..+++++.+. .|. ...|. -..
T Consensus 399 s~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~----~P~---~~tI~-~vn 470 (498)
T KOG4328|consen 399 SCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH----DPE---SSTIP-SVN 470 (498)
T ss_pred ccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc----Ccc---ccccc-cce
Confidence 4 33333333211 11223 3456899999999999999999999999999888765 121 11122 246
Q ss_pred EecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1054 AAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1054 ~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
.|+|-+..+++-++..|.|+||--.
T Consensus 471 ~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 471 EFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eecccccceeccCCccceEEEEecC
Confidence 7999543355555667899988643
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=1.9e-19 Score=176.59 Aligned_cols=298 Identities=16% Similarity=0.223 Sum_probs=206.1
Q ss_pred ccccceEEEEEcc----CcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCc-cccccCCCCCCCCCccE
Q 001248 749 LRATKISRLIFTN----SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPC 823 (1114)
Q Consensus 749 ~~~~~i~~l~~s~----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~-~~~~~~~~~~~~~~v~~ 823 (1114)
.|..+|..++|++ +...+++......+.+|+..... +. .+.. .....++.....
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~-y~D~d~~Esfyt 94 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQS-YADEDHDESFYT 94 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeee-ccCCCCCcceEE
Confidence 4778899999974 33345555555677888764311 00 1111 122236667777
Q ss_pred EEEeeCC----CEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee
Q 001248 824 FALSKND----SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 824 v~~s~d~----~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l 898 (1114)
++|+-|- -++|+++ -|.|+|.|+.++++...+.+|...|..+.|.|.+.+++++++.|.+|++|++++..++..+
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 7777543 3677776 7999999999999999999999999999999988899999999999999999999999887
Q ss_pred ---cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccc-------------ccCCCCCCC-------CCCc
Q 001248 899 ---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-------------QIPTGRTPT-------AQSD 955 (1114)
Q Consensus 899 ---~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------------~~~~~~~~~-------~~~i 955 (1114)
.||.+.|.++.|+++|.+++|++.|.++++|++...+.....-. .....|.+. ...|
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 56999999999999999999999999999999985432211000 000011110 0011
Q ss_pred eEEEEccCCcEEEE-EeCCeEEEEEcC-CCcee-------------eeeecCCCCcCeeEE--EECCCCCEEEEEEcCCe
Q 001248 956 TRVQFHQDQIHFLV-VHETQLAIFETT-KLECV-------------KQWVPRESSAPITHA--TFSCDSQLVYACFLDAT 1018 (1114)
Q Consensus 956 ~~v~fspdg~~l~~-~~d~~i~iwd~~-~~~~~-------------~~~~~~~h~~~v~~l--~~s~dg~~l~s~s~Dg~ 1018 (1114)
.++.|- |.++++ +.++.|..|..- -.+.+ ..+.. ....|.-+ +|.|-+++||.|...|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCc
Confidence 122221 577777 788899999872 22221 11111 13344444 55677889999999999
Q ss_pred EEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1019 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1019 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
|++||++..+....-. +.+......|. ..+|+. |+.+|+..++|++|.-||.-
T Consensus 331 v~vwdL~~~ep~~~tt----l~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 331 VYVWDLDNNEPPKCTT----LTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEECCCCCCccCce----EEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 9999998877642111 11111122244 677887 79999999999999999864
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=185.17 Aligned_cols=256 Identities=13% Similarity=0.168 Sum_probs=188.9
Q ss_pred CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCc------ccccccccCCCCCeeEEEEcCC-CCeEEEEeCCC
Q 001248 370 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM------PLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRH 442 (1114)
Q Consensus 370 g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~------~~~~~~~~~h~~~V~~l~~spd-g~~las~~~dg 442 (1114)
|.| +|.|+.|..|.|||+.--..+. ....++.-.. ........+|++.|.+++|+.+ ...||+||.|.
T Consensus 192 gNy-vAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 192 GNY-VAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred cce-EEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 564 9999999999999986432211 0011110000 0011234589999999999884 55789999999
Q ss_pred eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee-EeeccccCEEEEeeccCC
Q 001248 443 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSVCPHHKE 521 (1114)
Q Consensus 443 ~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~ 521 (1114)
+|++||+.++++.. ++..|.+.|.+++|.|.... +|++|+.|++|.+.|.+...... .++ ..+.|..++|.+..
T Consensus 267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~s 341 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHS 341 (463)
T ss_pred eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCC
Confidence 99999999999776 67789999999999998877 89999999999999998533322 222 55789999998765
Q ss_pred CceEEEEEecCCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEE
Q 001248 522 NIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600 (1114)
Q Consensus 522 ~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 600 (1114)
. ..++++..||+++-+|++.. ++..++..|...|.+++++..-. +++++++.|+.|++
T Consensus 342 e-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p--------------------~~l~t~s~d~~Vkl 400 (463)
T KOG0270|consen 342 E-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP--------------------GLLSTASTDKVVKL 400 (463)
T ss_pred c-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC--------------------cceeeccccceEEE
Confidence 4 57888899999999999987 67778899999999888877654 36888999999999
Q ss_pred EECCCcceEEEeccCCCCCCcCeEEEcCCC-CEEEEEeCCCcEEEEEccCCccceee
Q 001248 601 WDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRT 656 (1114)
Q Consensus 601 wd~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 656 (1114)
|++............-..+...|.++.|+- -.++.|+..+.+++||+.+.....+.
T Consensus 401 w~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ka 457 (463)
T KOG0270|consen 401 WKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKA 457 (463)
T ss_pred EeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHh
Confidence 998654432222111112345677777754 45677888888999999887444443
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=3.6e-19 Score=183.35 Aligned_cols=212 Identities=17% Similarity=0.261 Sum_probs=168.7
Q ss_pred cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CC
Q 001248 761 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG 839 (1114)
Q Consensus 761 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg 839 (1114)
....++++++.+++|+|||+.. +++.+.+++ |...|+++.++....|||+++ .|
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~-----------------------kl~hr~lkd--h~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRA-----------------------KLIHRFLKD--HQSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred hcceeeeccCcCceeeehhhHH-----------------------HHHhhhccC--CcceeEEEEecCCcceeEEeccCC
Confidence 3447889999999999988752 233333554 999999999999999999999 68
Q ss_pred eEEEEEcCCCccccccCCC-CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee-cccccCeeEEEEcCCC-CE
Q 001248 840 KISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHAL-NV 916 (1114)
Q Consensus 840 ~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~-~~ 916 (1114)
.|.|..+.++....+|... ...|+-+.|+|....+|.+++++|.|.+||+.....+..+ ..|+.+..+|+|+|.+ .+
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 8999999998887777654 3456799999966778889999999999999887666554 6799999999999965 57
Q ss_pred EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCC
Q 001248 917 LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS 995 (1114)
Q Consensus 917 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~ 995 (1114)
||+.+.|..|.+||+....... ++. .. .+...++|+++|.+|++| ..|.|..||++..+..-... ..|.
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~--~l~--y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~-sah~ 293 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTD--RLT--YS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR-SAHD 293 (673)
T ss_pred EEEecccceEEEeecccccccc--eee--ec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe-eecc
Confidence 8899999999999998643211 111 11 357899999999999995 88999999998766543322 4788
Q ss_pred cCeeEEEECCCC
Q 001248 996 APITHATFSCDS 1007 (1114)
Q Consensus 996 ~~v~~l~~s~dg 1007 (1114)
..|++++|-|..
T Consensus 294 ~sVt~vafq~s~ 305 (673)
T KOG4378|consen 294 ASVTRVAFQPSP 305 (673)
T ss_pred cceeEEEeeecc
Confidence 899999997764
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=5.9e-19 Score=181.76 Aligned_cols=292 Identities=12% Similarity=0.182 Sum_probs=213.0
Q ss_pred cccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcce-eeecccCceEEEEeecccccCCCCCccccc
Q 001248 717 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASV 795 (1114)
Q Consensus 717 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1114)
+..++....+++||+........+.... ....+.++.|+..... ++..+.|..+++|.-...
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~------------ 67 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK------------ 67 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccCC------------
Confidence 4455666789999998876655544332 2334888888877642 334556788888864321
Q ss_pred cccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcE
Q 001248 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 874 (1114)
Q Consensus 796 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 874 (1114)
++.+-..... ....-.|++......|+++|+ .++|+|||++...+.+.+++|...|+++.++- ...+
T Consensus 68 --------~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~Dey 135 (673)
T KOG4378|consen 68 --------TPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEY 135 (673)
T ss_pred --------CCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccce
Confidence 1111110011 122445555555568999998 89999999998778888999999999999998 7789
Q ss_pred EEEEeCCCcEEEEEcccceEEEeecccc-cCeeEEEEcCCCCE-EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001248 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 952 (1114)
Q Consensus 875 la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 952 (1114)
||+++..|.|.|..+.++.....|.... ..|.-+.|++..+. |.+++.+|.|.+||+..... .......|.
T Consensus 136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~Hs--- 208 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHS--- 208 (673)
T ss_pred eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhcc---
Confidence 9999999999999999988777776543 44568899998765 56889999999999987432 233334444
Q ss_pred CCceEEEEccCCcEEEE--EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe-e
Q 001248 953 QSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK-L 1029 (1114)
Q Consensus 953 ~~i~~v~fspdg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~-~ 1029 (1114)
.+...++|+|....|++ |.|..|.+||+........+.. ..+.+.++|+++|.+|++|+..|.|+.||+...+ .
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 36788999998766655 7999999999997777666653 5689999999999999999999999999997655 3
Q ss_pred eEEeCCCcccCCCCCCCCccceEEEecC
Q 001248 1030 RCRINPSAYLPAGVSSSNVHPLVIAAHP 1057 (1114)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1057 (1114)
+..+. .|... |. +++|-|
T Consensus 286 v~v~s-------ah~~s-Vt--~vafq~ 303 (673)
T KOG4378|consen 286 VAVRS-------AHDAS-VT--RVAFQP 303 (673)
T ss_pred ceEee-------ecccc-ee--EEEeee
Confidence 43333 22233 55 777776
No 162
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=8.2e-19 Score=179.33 Aligned_cols=196 Identities=16% Similarity=0.235 Sum_probs=156.2
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEe------------------eccccCCeeEEEecCCCCeeEEEEecCCCCEE
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLE------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~------------------l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~ 492 (1114)
-|.|+|.|+.|..|.|||+.--..+.+... -.+|+..|.+++|+.+-+. +|++||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 377999999999999999864322222222 2379999999999998877 899999999999
Q ss_pred EEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeee
Q 001248 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 493 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
+||+.+|++..++..|.+.|.++.|++.. ..+|++|+.|+++.+.|.+........-...+.|..++|.+...
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se------ 342 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE------ 342 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc------
Confidence 99999999999999999999999998764 48999999999999999985333222222233444555544433
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCc-ceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCC
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
..++++..||+|+-+|++.. +++.++..|.. .|.++++++ .-.++++++.|+.+++|++...
T Consensus 343 --------------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 343 --------------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred --------------eeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 45788889999999999875 88999988855 899999998 4567889999999999998654
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=6.5e-19 Score=175.90 Aligned_cols=224 Identities=20% Similarity=0.315 Sum_probs=163.0
Q ss_pred cceeEeccCCCCceEEEEcC--CCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEE
Q 001248 349 KTVTRTLNQGSSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 349 ~~~~~~~~h~~~v~~v~~sp--dg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
..+...-+|...=.+++||| .|+ |++|..-+.|++|...+|.-.. ...-+.+|+..|-.+
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~v----------------d~~Pf~gH~~SVEDL 263 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKV----------------DQRPFTGHTKSVEDL 263 (440)
T ss_pred CceEEecccCccceeeecccccccc--cccCccccceEeeeeccCceee----------------cCccccccccchhhh
Confidence 33444445999999999999 454 8888888999999998865332 112367899999999
Q ss_pred EEcC-CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC---Ccce
Q 001248 427 IWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQ 502 (1114)
Q Consensus 427 ~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~ 502 (1114)
+||| ....||+|+.||+|+|||++.+...... ....|.+.|+.|.|+.+-. +|++|+.||+++|||+++ ++++
T Consensus 264 qWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pV 340 (440)
T KOG0302|consen 264 QWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPV 340 (440)
T ss_pred ccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcc
Confidence 9999 4567899999999999999998544333 3478999999999998888 899999999999999974 6788
Q ss_pred eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
.+|+.|..+|+++.|+|..+ ..+++++.|.+|.+||+....-.-..... ....+.=-|. +.+|.......+.-+.|
T Consensus 341 A~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsvE~D~ee~~~~--a~~~L~dlPp-QLLFVHqGQke~KevhW 416 (440)
T KOG0302|consen 341 ATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSVEADEEEIDQE--AAEGLQDLPP-QLLFVHQGQKEVKEVHW 416 (440)
T ss_pred eeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeeccCChhhhccc--cccchhcCCc-eeEEEecchhHhhhhee
Confidence 89999999999999998876 58888899999999999643221100000 0000000000 02222223345666777
Q ss_pred cCCC-CEEEEEeCCCe
Q 001248 583 DTTK-NRFLAAGDDFS 597 (1114)
Q Consensus 583 ~~~~-~~l~~~~~dg~ 597 (1114)
++.- .++++.+.||-
T Consensus 417 H~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 417 HRQIPGLLVSTAIDGF 432 (440)
T ss_pred ccCCCCeEEEecccce
Confidence 7765 45666666663
No 164
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=3.3e-16 Score=183.06 Aligned_cols=369 Identities=22% Similarity=0.392 Sum_probs=268.1
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc-ceeEeecccc-CEEEEeeccCCCce-EEEEEec-CCeE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA-PVYSVCPHHKENIQ-FIFSTAL-DGKI 535 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-d~~i 535 (1114)
.+..|...+..+.|.+.+. .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. .+++. +++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3567899999999999999 68888899999999998887 6777776443 77777774 55555 5555444 9999
Q ss_pred EEEEcCC-CCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC-CCeEEEEECCCcceEEEec
Q 001248 536 KAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 536 ~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~ 613 (1114)
.+|+... ......+..+...+..+.+++++. .+++++. ++.+++|+...+..+..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---------------------LLASGSSLDGTIKLWDLRTGKPLSTLA 195 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCC---------------------EEEecCCCCCceEEEEcCCCceEEeec
Confidence 9999987 555566666766666666666664 5777775 9999999999888888887
Q ss_pred cCCCCCCcCeEEEcCCCC-EEEEEeCCCcEEEEEccCCcccee-eccccccccccCCCCCCCCccchhhhhhhhcccccc
Q 001248 614 ADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLR-TFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 691 (1114)
Q Consensus 614 ~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1114)
.| ...+.+++|+|++. ++++++.|+.|++||...+ .... .+.+
T Consensus 196 ~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~-------------------------------- 240 (466)
T COG2319 196 GH--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSG-------------------------------- 240 (466)
T ss_pred cC--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCC--------------------------------
Confidence 64 45799999999998 5555589999999966533 1111 0100
Q ss_pred ccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeeccc
Q 001248 692 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS 771 (1114)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~ 771 (1114)
T Consensus 241 -------------------------------------------------------------------------------- 240 (466)
T COG2319 241 -------------------------------------------------------------------------------- 240 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCc
Q 001248 772 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK 850 (1114)
Q Consensus 772 dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~ 850 (1114)
|.... ...|++++.++++++ |+.+++|+.....
T Consensus 241 ---------------------------------------------~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 241 ---------------------------------------------HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred ---------------------------------------------CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 11111 114555555555454 6666677666444
Q ss_pred c-ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec--ccccCeeEEEEcCCCCEEEEE-eCCCcE
Q 001248 851 T-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSS-GADSQL 926 (1114)
Q Consensus 851 ~-~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~-s~D~~v 926 (1114)
. ...+..|...+.++.|+| ++..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..|+.+
T Consensus 275 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 275 SLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred cEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence 3 333355678899999999 77777779999999999998887766665 888889999994333556655 688999
Q ss_pred EEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE--EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEEC
Q 001248 927 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFS 1004 (1114)
Q Consensus 927 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s 1004 (1114)
.+|++.... ........ ..+..+.+++ ...... ..++.+.+|+............. ...+....++
T Consensus 354 ~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 421 (466)
T COG2319 354 RLWDLRTGK-----PLKTLEGH----SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH--TSRVTSLDFS 421 (466)
T ss_pred EeeecCCCc-----eeEEecCC----ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCC--CCcEEEEEEC
Confidence 999998854 11111111 1267888888 543443 47889999999988887766521 1789999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCC
Q 001248 1005 CDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 1005 ~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
+++..+++++.++.+++|+..+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 422 PDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCcEEEEecCCCcEEEEeccC
Confidence 9999999999999999999988
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=4.7e-19 Score=173.85 Aligned_cols=258 Identities=19% Similarity=0.262 Sum_probs=193.7
Q ss_pred CCCCceEEEEcCC---CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC-
Q 001248 357 QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG- 432 (1114)
Q Consensus 357 h~~~v~~v~~spd---g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg- 432 (1114)
|...-..++|+-| |.-+||.|+.-|.|+|.|+.+++... .+.+|.+.|+.+.|.|+.
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~-------------------~~~ghG~sINeik~~p~~~ 148 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK-------------------NYRGHGGSINEIKFHPDRP 148 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-------------------ceeccCccchhhhcCCCCC
Confidence 6667778888754 44578888899999999999988766 378999999999999954
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee---------
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--------- 503 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--------- 503 (1114)
++|++++.|.+|++|++++..++....-+.||.+.|.++.|+.+|. +++++|.|.+|++|++...+...
T Consensus 149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 7899999999999999999999987777889999999999999999 79999999999999987332100
Q ss_pred -------------------EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC-CCCeeeecCCCCeeEEE-EEe
Q 001248 504 -------------------IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTM-AYS 562 (1114)
Q Consensus 504 -------------------~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~-~~s 562 (1114)
+-.-|...|-|+.|.. +++++-+-++.|.+|..-. .+............+-+ .|.
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~ 302 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD 302 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence 1124677777777643 5899999999999997622 11111111111111100 000
Q ss_pred cCCCeEEeeecccceeE--EEecCCCCEEEEEeCCCeEEEEECCCcce--EEEeccCCCCCCcCeEEEcCCCCEEEEEeC
Q 001248 563 ADGTRTYQGFRKRSLGV--VQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTN 638 (1114)
Q Consensus 563 ~~g~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 638 (1114)
.....+.. .+|++-+..|+.|...|.|++||++...+ ..++..+.....|...+|+.||.+|+...+
T Consensus 303 ---------~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd 373 (385)
T KOG1034|consen 303 ---------YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD 373 (385)
T ss_pred ---------cCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC
Confidence 01113333 35567788999999999999999987654 334444444567899999999999999999
Q ss_pred CCcEEEEEcc
Q 001248 639 DNGIKILATS 648 (1114)
Q Consensus 639 dg~i~iwd~~ 648 (1114)
|++|.-||..
T Consensus 374 d~~Vwrwdrv 383 (385)
T KOG1034|consen 374 DGTVWRWDRV 383 (385)
T ss_pred CCcEEEEEee
Confidence 9999999853
No 166
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.6e-19 Score=204.27 Aligned_cols=280 Identities=13% Similarity=0.166 Sum_probs=212.4
Q ss_pred ccCcccccccccCCCCcCCCCcCCCCCCCCCcceeEeccCCCCceEEEEcCCCCe---EEEEEecCCcEEEEEcCCccee
Q 001248 318 NLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQT---LLLVGTNVGDIGLWEVGSRERL 394 (1114)
Q Consensus 318 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~---ll~tg~~dg~v~iwd~~~~~~~ 394 (1114)
++.+.||.++|..... ..+....+.-...-..++|.+.|.. ++|.|..||.|.+||...-..-
T Consensus 38 ~~slEifeld~~~~~~--------------dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~ 103 (1049)
T KOG0307|consen 38 SASLEIFELDFSDESS--------------DLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN 103 (1049)
T ss_pred ccccceeeecccCccc--------------cccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccC
Confidence 5566777777765431 1122344445677899999998886 6999999999999998752000
Q ss_pred EEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC-eEEEEeCCCeEEEEEccCCceeeeeEee--ccccCCeeEE
Q 001248 395 VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEI--DAHVGGVNDI 471 (1114)
Q Consensus 395 ~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l--~~h~~~V~~v 471 (1114)
..... ......|.+.|..+.|++.+. +||+|+.||.|.|||+..-+... +. ..-.+.|.++
T Consensus 104 ------------~~~~~-la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~---~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 104 ------------ASEEV-LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF---TPGSQAPPSEIKCL 167 (1049)
T ss_pred ------------cchHH-HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC---CCCCCCCcccceEe
Confidence 00011 114678999999999999665 99999999999999998744322 22 1245679999
Q ss_pred EecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecccc--CEEEEeeccCCCceEEEEEecCC--eEEEEEcCCCC-Ce
Q 001248 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDG--KIKAWLYDNLG-SR 546 (1114)
Q Consensus 472 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~-~~ 546 (1114)
+|+..-.+ +|++++.+|.+.|||++..+.+-.+..|.+ .+..++|+++...+++++...|+ .|.+||++... ..
T Consensus 168 sWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 168 SWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred ccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 99988776 799999999999999999888877766654 46788999987654444444443 69999998654 44
Q ss_pred eeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEE
Q 001248 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF 626 (1114)
Q Consensus 547 ~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 626 (1114)
..+..|...|.++.|++.+. .++++++.|+.|.+||.++++.+..+... ..++..+.|
T Consensus 247 k~~~~H~~GilslsWc~~D~--------------------~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~nW~fdv~w 304 (1049)
T KOG0307|consen 247 KILEGHQRGILSLSWCPQDP--------------------RLLLSSGKDNRIICWNPNTGEVLGELPAQ--GNWCFDVQW 304 (1049)
T ss_pred hhhcccccceeeeccCCCCc--------------------hhhhcccCCCCeeEecCCCceEeeecCCC--Ccceeeeee
Confidence 46677888888888877653 47899999999999999999999999864 348899999
Q ss_pred cCCC-CEEEEEeCCCcEEEEEccCC
Q 001248 627 NKDG-CLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 627 s~d~-~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+|.. ..+++++.||.|.|+.+.+.
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cCCCcchhhhheeccceeeeeeecC
Confidence 9954 58889999999999998765
No 167
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=1.1e-16 Score=166.75 Aligned_cols=506 Identities=14% Similarity=0.140 Sum_probs=290.7
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
.|...|.|+.|+.... ++.++ .|..+.+|.-.+.+.....+. .... ++. ..|-.+- +..=-.....+
T Consensus 12 r~~e~vc~v~w~~~ee-i~~~~-dDh~~~~~~~~~~~s~~~~~~-----p~df--~pt---~~h~~~r-s~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEE-IYFVS-DDHQIFKWSDVSRDSVEVAKL-----PDDF--VPT---DMHLGGR-SSGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccce-EEEec-cCceEEEeecccchhhhhhhC-----Cccc--CCc---ccccccc-ccCCCCCcceE
Confidence 4777788999999888 45554 566666665444332221100 0000 000 0110000 00000133468
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEE
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1114)
+.++.||.+.|-+-.. +.-+ .+..|.+.|.+-.|+|||. -|+|++.||.|++|. ++|....++.....+|.|+
T Consensus 79 ~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 8888999988887543 2222 5779999999999999999 799999999999999 8888777777788999999
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
+|.|+.+ +.+++.+ +.+.+=-+.....+.....|.+-|. ++.|++..+.+++|++|
T Consensus 152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL---------------------~~~W~~~s~lI~sgGED 207 (737)
T KOG1524|consen 152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVL---------------------SLSWSTQSNIIASGGED 207 (737)
T ss_pred EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEE---------------------EeecCccccceeecCCc
Confidence 9987765 4565554 3344444444444445555555444 45555556689999999
Q ss_pred CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCc
Q 001248 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1114)
-..++||. .|..+..-..|.. +|++++|.|+ +.++.++. ++.++=
T Consensus 208 ~kfKvWD~-~G~~Lf~S~~~ey--~ITSva~npd-~~~~v~S~-nt~R~~------------------------------ 252 (737)
T KOG1524|consen 208 FRFKIWDA-QGANLFTSAAEEY--AITSVAFNPE-KDYLLWSY-NTARFS------------------------------ 252 (737)
T ss_pred eeEEeecc-cCcccccCChhcc--ceeeeeeccc-cceeeeee-eeeeec------------------------------
Confidence 99999996 5666666655544 7999999999 55665554 233310
Q ss_pred cchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceE
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1114)
....+.|.
T Consensus 253 ------------------------------------------------------------------------~p~~GSif 260 (737)
T KOG1524|consen 253 ------------------------------------------------------------------------SPRVGSIF 260 (737)
T ss_pred ------------------------------------------------------------------------CCCccceE
Confidence 01446789
Q ss_pred EEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEE
Q 001248 756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1114)
Q Consensus 756 ~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 835 (1114)
.++||+||..+++++..|.+.+=-.-. ..+ + -+.+=++
T Consensus 261 nlsWS~DGTQ~a~gt~~G~v~~A~~ie----------------------q~l-------------~-------~~n~~~t 298 (737)
T KOG1524|consen 261 NLSWSADGTQATCGTSTGQLIVAYAIE----------------------QQL-------------V-------SGNLKAT 298 (737)
T ss_pred EEEEcCCCceeeccccCceEEEeeeeh----------------------hhh-------------h-------hccceeE
Confidence 999999999999999998876521100 000 0 0111122
Q ss_pred Ee-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCC
Q 001248 836 AS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 914 (1114)
Q Consensus 836 ~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 914 (1114)
.. ...|.+-|+.++.+ ..+. .+..|...+..- +.+++ +. ...|++|.-.....-..+.+....+.-+.-.. .
T Consensus 299 ~~~r~~I~vrdV~~~v~-d~LE-~p~rv~k~sL~Y--~hLvv-aT-s~qvyiys~knwntpiiidgre~tr~lieq~e-k 371 (737)
T KOG1524|consen 299 SKSRKSITVRDVATGVQ-DILE-FPQRVVKFSLGY--GHLVV-AT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQGE-K 371 (737)
T ss_pred eeccceEEeehhhhhHH-HHhh-Cccceeeeeece--eEEEE-Ee-ccEEEEEecCCccCcEEEeccccchhHhhhhh-h
Confidence 22 45577777766544 2232 345566666553 33333 33 24688887554433334444444332222111 1
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE---EeCCeEEEEEc-CCCceeeeee
Q 001248 915 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV---VHETQLAIFET-TKLECVKQWV 990 (1114)
Q Consensus 915 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~---~~d~~i~iwd~-~~~~~~~~~~ 990 (1114)
.+++ ....++.+|..+....... .+++... .....-..|-....|+. ++...+.+||. .+|+....-.
T Consensus 372 ~fli--~dgsSi~lytyegR~~~np----~~Pg~~~--dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk 443 (737)
T KOG1524|consen 372 YFLI--LDGSSIWLYTYEGRLHLNP----RYPGSQI--DLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGK 443 (737)
T ss_pred heEE--ecCcEEEEEEecCceecCC----CCCCccc--ccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCcc
Confidence 1222 2233466666554221110 0111110 11222233333445555 23456788998 6776644322
Q ss_pred cCCCCcCeeEEEEC----CCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEE
Q 001248 991 PRESSAPITHATFS----CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1066 (1114)
Q Consensus 991 ~~~h~~~v~~l~~s----~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~ 1066 (1114)
.-.|...|..++.. ++.+.++.-...+.++|=.+.+.-...++- .-| .-|. .++|+. -.-+.+|
T Consensus 444 ~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~-----KiG---TmVh--tLawnd--ttNiLcg 511 (737)
T KOG1524|consen 444 SLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY-----KIG---TMVH--TLAWND--TTNILCG 511 (737)
T ss_pred ccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh-----hhh---hhhh--hhhhcc--ccceeee
Confidence 12355666666664 455677777777777776654332111110 111 1133 788874 4557789
Q ss_pred eCCCcEEEEeccCCC
Q 001248 1067 LSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1067 ~~Dg~v~vW~i~~~~ 1081 (1114)
-.|+++.||-.++.-
T Consensus 512 lqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 512 LQDTCFSVWYYPNEV 526 (737)
T ss_pred eccceEEEEEcCCcc
Confidence 999999999987744
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=2.6e-17 Score=161.20 Aligned_cols=227 Identities=13% Similarity=0.144 Sum_probs=169.8
Q ss_pred cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCC---ccEEEEeeCCCEEEEEe
Q 001248 761 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA---VPCFALSKNDSYVMSAS 837 (1114)
Q Consensus 761 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~---v~~v~~s~d~~~l~~~~ 837 (1114)
|+..++++.+.+.-|.+||.- +|++... +....|... ..+++|+|||.+|.+|.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaf----------------------tG~lraS-y~~ydh~de~taAhsL~Fs~DGeqlfaGy 177 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAF----------------------TGKLRAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAGY 177 (406)
T ss_pred CccceeeeccccCceeeeecc----------------------ccccccc-hhhhhhHHhhhhheeEEecCCCCeEeecc
Confidence 667778888888888877654 3333221 111123333 44799999999999999
Q ss_pred CCeEEEEEcC-CCcccc---cc----CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEE
Q 001248 838 GGKISLFNMM-TFKTMA---TF----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 909 (1114)
Q Consensus 838 dg~i~iwd~~-~~~~~~---~~----~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 909 (1114)
..+|++||+. .|.... ++ .+..+-|.+++|+|.+...+|+|+-...+-||.-..+.++..+-+|.+.|+.+.
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~ 257 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ 257 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence 9999999994 333221 11 223567899999998888999999999999999888999999999999999999
Q ss_pred EcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCC-Ccee
Q 001248 910 FSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK-LECV 986 (1114)
Q Consensus 910 ~s~d~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~-~~~~ 986 (1114)
|.+||+.|.+|++ |..|..||+..... ++-.+..|......-.-....|+|++|+++ .||.|++||+++ +..+
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence 9999999999985 67899999987443 233333333211122234456899999996 999999999998 6655
Q ss_pred eeeecCCCCcCeeEEEECCCCCEEEEEEcC
Q 001248 987 KQWVPRESSAPITHATFSCDSQLVYACFLD 1016 (1114)
Q Consensus 987 ~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D 1016 (1114)
..+. .|+..+..+++.|--.++|+++..
T Consensus 334 sv~~--~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 334 SVTG--NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccc--cccccccceecCcccceeeeccCc
Confidence 5544 678999999999997778877644
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=2.3e-17 Score=166.99 Aligned_cols=302 Identities=16% Similarity=0.183 Sum_probs=214.8
Q ss_pred ccceEEEEEccCcc-eeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 751 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
..++..+.|.+++. .+++++.|..|++|.+....-...+..+. ....+. .|...|+++.|+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~--------------y~s~Ls--~H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVE--------------YLSSLS--RHTRAVNVVRFSPD 76 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEE--------------Eeeccc--CCcceeEEEEEcCC
Confidence 45788899988877 89999999999999987543321110000 001122 39999999999999
Q ss_pred CCEEEEEe-CCeEEEEEcC--------C--------CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 830 DSYVMSAS-GGKISLFNMM--------T--------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
|..||+|+ +|.|.+|-.. + ....+.+.+|...|..++|+| ++.++++|+-|..+++||+..|
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence 99999999 6899999765 2 223345678999999999999 9999999999999999999999
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccc---cccCCCCC------------CCCCCceE
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF---LQIPTGRT------------PTAQSDTR 957 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~~~~~------------~~~~~i~~ 957 (1114)
.+...+.+|...|..++|.|-++++++-+.|...+++.+.........- +....++. ....--..
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 9999999999999999999999999999999977777765533222111 00000000 00112367
Q ss_pred EEEccCCcEEEE-E----eCCe-----EEEEEcCCCceeeeeecCCCCcCeeEEEECC------------------CCCE
Q 001248 958 VQFHQDQIHFLV-V----HETQ-----LAIFETTKLECVKQWVPRESSAPITHATFSC------------------DSQL 1009 (1114)
Q Consensus 958 v~fspdg~~l~~-~----~d~~-----i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~------------------dg~~ 1009 (1114)
++|+|||.+|++ + ..+. .++|+-...+.... ....-..+...+.|+| -+-.
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~-~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAA-RLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCcee-ecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 899999999998 2 2233 34555443322111 1122344555555554 2223
Q ss_pred EEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1010 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1010 l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+|.+ .-..|+|||.++.+.++.+...+|.+ +. .++|++ ||..|+..|.||-.-+-.+...|
T Consensus 315 faiA-t~~svyvydtq~~~P~~~v~nihy~~-------iT--Diaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 315 FAIA-TKNSVYVYDTQTLEPLAVVDNIHYSA-------IT--DIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEe-ecceEEEeccccccceEEEeeeeeee-------ec--ceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 4444 46689999999999998887555554 33 899998 79999999999988887777766
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=3.7e-17 Score=160.09 Aligned_cols=274 Identities=16% Similarity=0.272 Sum_probs=189.6
Q ss_pred eeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-------cc-----eeEeec-cccCEEEEeec-----cCCCceEEEEE
Q 001248 468 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AK-----QYIFEG-HEAPVYSVCPH-----HKENIQFIFST 529 (1114)
Q Consensus 468 V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-------~~-----~~~~~~-h~~~v~~~~~~-----~~~~~~~l~s~ 529 (1114)
...+.|||||. .|++-+.|..+.+|++... .. ..+++- ....|...+|. ..|+..++++.
T Consensus 52 ~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 52 LKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 45689999999 7899999999999997521 11 111111 23456666664 23556789999
Q ss_pred ecCCeEEEEEcCCCCCeeeecCCCC-----eeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEEC-
Q 001248 530 ALDGKIKAWLYDNLGSRVDYEAPGR-----WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM- 603 (1114)
Q Consensus 530 ~~d~~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~- 603 (1114)
+.+.-|++||.-+++....+..-.. ...+++|+|||. +|++ +....|++||+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---------------------qlfa-GykrcirvFdt~ 187 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---------------------QLFA-GYKRCIRVFDTS 187 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---------------------eEee-cccceEEEeecc
Confidence 9999999999999887776654321 234555555555 5554 45689999998
Q ss_pred CCcceEEEec-----cCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccc
Q 001248 604 DSVQLLTSID-----ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP 677 (1114)
Q Consensus 604 ~~~~~~~~~~-----~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1114)
+.|+...... ..+..+.+.+++|+| +.+.+++|+....+-|+.-... ..+..+
T Consensus 188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~ll-------------------- 246 (406)
T KOG2919|consen 188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQLL-------------------- 246 (406)
T ss_pred CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceeee--------------------
Confidence 5554322221 122345678899999 5668888888777777754333 111100
Q ss_pred hhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEE
Q 001248 678 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL 757 (1114)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l 757 (1114)
T Consensus 247 -------------------------------------------------------------------------------- 246 (406)
T KOG2919|consen 247 -------------------------------------------------------------------------------- 246 (406)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe
Q 001248 758 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837 (1114)
Q Consensus 758 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 837 (1114)
.+|.+.|+.+.|.+||+.|.+|.
T Consensus 247 ---------------------------------------------------------ggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 247 ---------------------------------------------------------GGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred ---------------------------------------------------------cccCCCeeeEEeccCcCeecccc
Confidence 02666677777777777777776
Q ss_pred --CCeEEEEEcCC-CccccccCCCCC-CeEEEE--EecCCCcEEEEEeCCCcEEEEEccc-ceEEEeecccccCeeEEEE
Q 001248 838 --GGKISLFNMMT-FKTMATFMPPPP-AATFLA--FHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAF 910 (1114)
Q Consensus 838 --dg~i~iwd~~~-~~~~~~~~~~~~-~i~~l~--~sp~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~ 910 (1114)
+..|..||++. ...+..+..|.. .=..+- ..| ++++||+|+.||.|++||+.+ +..+..+..|+..|+.+++
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 67788888863 455566665544 223344 457 799999999999999999998 7778888889999999999
Q ss_pred cCCCCEEEEEeCCC
Q 001248 911 SHALNVLVSSGADS 924 (1114)
Q Consensus 911 s~d~~~l~s~s~D~ 924 (1114)
+|--.++|+++...
T Consensus 349 nP~mpilatssGqr 362 (406)
T KOG2919|consen 349 NPIMPILATSSGQR 362 (406)
T ss_pred CcccceeeeccCce
Confidence 99988888887643
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=1.2e-17 Score=159.10 Aligned_cols=308 Identities=13% Similarity=0.188 Sum_probs=197.1
Q ss_pred cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec-CCCCeeEEEEEecCCCeEEeeeccccee
Q 001248 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1114)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~~~~~~~~~~v~ 578 (1114)
.+...+++|.+.|+++.|..+ .+|++|..-|.+++|++.+......+. .+...|+.+...|++.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~------------ 69 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQAN---ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS------------ 69 (323)
T ss_pred CCeeEeccccchheehhhccc---hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc------------
Confidence 345677799999999997543 479999999999999999988877777 4556777777777655
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCC-cEEEEEccCCccceeec
Q 001248 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTF 657 (1114)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg-~i~iwd~~~~~~~~~~~ 657 (1114)
+.+-+.|+.+.+|++..+..+..-.. .++++.|.+-. +...+... ..-.++-+...+ ....
T Consensus 70 ----------l~tqgRd~~L~lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~ 131 (323)
T KOG0322|consen 70 ----------LDTQGRDPLLILWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQ 131 (323)
T ss_pred ----------hhhcCCCceEEEEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch-hhhh
Confidence 88889999999999987665443321 23444444311 11111100 011111111100 0000
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCC
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1114)
.+ +..-.+++-+-.
T Consensus 132 D~-------------------------------------------------------------g~~tqv~i~dd~----- 145 (323)
T KOG0322|consen 132 DG-------------------------------------------------------------GDTTQVQIADDS----- 145 (323)
T ss_pred cc-------------------------------------------------------------CccceeEccCch-----
Confidence 00 000011111100
Q ss_pred ccccccccCccccccceEEEEEc-cCcc--eeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 738 NQCRSLRLPENLRATKISRLIFT-NSGN--AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~l~~s-~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
..+..+.+.+..+. .++. .++++.++|.+.+||++.+....+-. ..|.. . ...
T Consensus 146 ---------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~-------~~~kv------~--~~~ 201 (323)
T KOG0322|consen 146 ---------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP-------QSSKV------E--SPN 201 (323)
T ss_pred ---------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc-------ccccc------c--cch
Confidence 01123333333321 1222 35677888999999988652211111 11111 1 111
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC--Ccc--ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~ 889 (1114)
..|..+|.++.+.+.-..=++|+ +..+..|++.. +.+ ..+.......|..+..-| |++++|+++.|+.||||+.
T Consensus 202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSW 280 (323)
T ss_pred hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEe
Confidence 23889999999987655555666 67788888763 222 122233345688899999 9999999999999999999
Q ss_pred ccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
++...+..++.|++.|++++|+||...+|.+|.|++|-+|++
T Consensus 281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999986
No 172
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3e-16 Score=170.59 Aligned_cols=505 Identities=14% Similarity=0.158 Sum_probs=292.9
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC-----
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----- 431 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd----- 431 (1114)
|...-.++.|+|.| |+|.|+ ...|.|-|..+-+.+. .+..|...|+.+.|+|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEec-CceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 44446889999999 688876 4578888877766655 36778899999999872
Q ss_pred -C------CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecC---CCCeeEEEEecCCCCEEEEeCCCCcc
Q 001248 432 -G------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH---PNKQLCVITCGDDKTIKVWDATNGAK 501 (1114)
Q Consensus 432 -g------~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~ 501 (1114)
+ -+||++...|.|.+||...+..+. .+..|..+|..+.|-+ +.+. +|+.-....++.+|+..+|+.
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 1 257778888999999999877554 6888999999999865 3434 455555667999999999999
Q ss_pred eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCC-------eEEee---
Q 001248 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------RTYQG--- 571 (1114)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~-------~~~~~--- 571 (1114)
............++.+.|-.. ..+..-+..|.+.+-+.-..... ......+.+..+.. ....+
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep------~~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEP------DVPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred eeccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCC------CCCceeEEEecCccchhhhhhhhhccccc
Confidence 888776666666677665444 34444455666665544321111 00111111111100 00000
Q ss_pred -ecccc------eeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCC--CEEEEEeCCCcE
Q 001248 572 -FRKRS------LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG--CLLAVSTNDNGI 642 (1114)
Q Consensus 572 -~~~~~------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~dg~i 642 (1114)
..... ...++|+|.-+.++-......+.++|++...++.......+ .+.-+.+-|++ ..|++.-.||.+
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~l 298 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRL 298 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeE
Confidence 00000 11246677665566666678899999999888888876654 34556676654 578999999999
Q ss_pred EEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccC
Q 001248 643 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 722 (1114)
Q Consensus 643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1114)
.+|-.+......+.-..+ + +.+.
T Consensus 299 tirvrk~~~~~f~~~~~~--------------l-------------------------------------------~~dl 321 (1062)
T KOG1912|consen 299 TIRVRKEEPTEFKKPNAS--------------L-------------------------------------------SMDL 321 (1062)
T ss_pred EEEEeeccCccccccchh--------------h-------------------------------------------cccc
Confidence 999754431111111000 0 0000
Q ss_pred CCceeEEEeccCCCCccccccccCccccccceEEEEEccC-cceeeecccCceEEEEeecccccCCCCCccccccccccC
Q 001248 723 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1114)
Q Consensus 723 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~ 801 (1114)
...+.+-... .+..+......|. ...++..-.+|...+|.+.++....+.......-..-++
T Consensus 322 ~~Q~~~vr~m-----------------~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~ 384 (1062)
T KOG1912|consen 322 GEQVHVVRPM-----------------EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFD 384 (1062)
T ss_pred ccceEEEeec-----------------hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccc
Confidence 0001000000 1112222233333 344555556677777777654443333221110000000
Q ss_pred CCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCC-------cE
Q 001248 802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN-------NI 874 (1114)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~-------~~ 874 (1114)
....... -....-+.+|.| | ...+|........ ....+-..-.| .+ .+
T Consensus 385 f~~~~~~---------v~k~~l~~LS~d---------g-----~h~sGs~~~~~~p-~p~~t~~~~~p-~~n~~~~~~pL 439 (1062)
T KOG1912|consen 385 FNLSTKL---------VGKTSLISLSDD---------G-----SHSSGSTCVRMRP-MPELTKVENDP-GGNTPAGTVPL 439 (1062)
T ss_pred ccCceee---------hhhccccchhhc---------C-----CCCCCceeeeccc-CcccceeecCC-CCCccceeeee
Confidence 0000000 000000111112 2 0111111111110 00000011111 11 28
Q ss_pred EEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCcccccccccc
Q 001248 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQI 944 (1114)
Q Consensus 875 la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~----------D~~v~iwd~~~~~~~~~~~~~~ 944 (1114)
+|.|...|+|.++|+.++.....+..|.+.|.++.|-... .|+|.+. -+.+.|-|+.+|-....+-++.
T Consensus 440 vAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s-slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~ 518 (1062)
T KOG1912|consen 440 VAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS-SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK 518 (1062)
T ss_pred EEeecCCceEEEEEecchhhhhhhcccccceeeeeeccce-eEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence 8999999999999999999999999999999999997543 3444332 3457788888876544333332
Q ss_pred CCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcC-eeEEEEC
Q 001248 945 PTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAP-ITHATFS 1004 (1114)
Q Consensus 945 ~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~-v~~l~~s 1004 (1114)
. ...+|+.+..|.-|+||++ -.+.-+.+||+++..+++.... .-+ |+.+.|+
T Consensus 519 ~-----despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~---a~P~it~leWs 572 (1062)
T KOG1912|consen 519 P-----DESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL---ALPLITVLEWS 572 (1062)
T ss_pred C-----CcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh---cCCcEEEEeec
Confidence 2 2368999999999999999 5888999999998887665432 234 8888887
No 173
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=4.6e-17 Score=159.63 Aligned_cols=405 Identities=15% Similarity=0.159 Sum_probs=238.7
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE-eCC
Q 001248 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSR 441 (1114)
Q Consensus 363 ~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d 441 (1114)
-.+|||+|+| +|+.+. ..+.|-|.++-+..+ ++. --+.|..+.|+.|.-+++++ ..|
T Consensus 13 ~c~fSp~g~y-iAs~~~-yrlviRd~~tlq~~q-------------------lf~-cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGNY-IASLSR-YRLVIRDSETLQLHQ-------------------LFL-CLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCCe-eeeeee-eEEEEeccchhhHHH-------------------HHH-HHHHhhheeeeccceeeeeeeecc
Confidence 4679999997 887664 488888887754432 111 12478889999998887665 778
Q ss_pred CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCC
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 521 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 521 (1114)
+.|.+|++...+-.. .+.....++.++.|||||+. +|.+...|-.|.||.+.+.+... +..-...+..++|+ +
T Consensus 71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~--~ 143 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFH--P 143 (447)
T ss_pred ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEE-ecccccCceeEEEC--C
Confidence 899999998766444 56677789999999999987 68888899999999998876543 33233455677765 4
Q ss_pred CceEEEEEecCCeEEEEEcCCC---CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeE
Q 001248 522 NIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 598 (1114)
Q Consensus 522 ~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 598 (1114)
||++.+..+.-.......+... ..+..+....-..+.+.|+||| +.++
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg---------------------~~la-------- 194 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG---------------------NWLA-------- 194 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC---------------------cEEE--------
Confidence 5677777664322111111100 0111222223334455555555 4444
Q ss_pred EEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccch
Q 001248 599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 678 (1114)
Q Consensus 599 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1114)
+||---.-.+..+... -.+..++|+|.+++|++|+.|+.+|+.+--+-+ .+..+- |...+
T Consensus 195 -Vwd~~Leykv~aYe~~---lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk-~f~efl-hl~s~-------------- 254 (447)
T KOG4497|consen 195 -VWDNVLEYKVYAYERG---LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK-PFGEFL-HLCSY-------------- 254 (447)
T ss_pred -Eecchhhheeeeeeec---cceeEEEeccccceEEeeccchhhhhhceeeee-ehhhhc-cchhc--------------
Confidence 5553222222222211 247889999999999999999999987654441 111110 00000
Q ss_pred hhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCc-eeEEEeccCCCCccccccccCccccccceEEE
Q 001248 679 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK-SKVWKLTELSEPNQCRSLRLPENLRATKISRL 757 (1114)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l 757 (1114)
.|-+ +.++. +. .. .-.-...++
T Consensus 255 -------------------------------------------~dp~~~~~~k-e~------~~-------~~ql~~~cL 277 (447)
T KOG4497|consen 255 -------------------------------------------HDPTLHLLEK-ET------FS-------IVQLLHHCL 277 (447)
T ss_pred -------------------------------------------cCchhhhhhh-hh------cc-------hhhhccccc
Confidence 0000 00000 00 00 000112334
Q ss_pred EEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe
Q 001248 758 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837 (1114)
Q Consensus 758 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 837 (1114)
.|.|..- ...+|........ ......+++.-.+.+. .. +..-.+.-++||+|..++++-.
T Consensus 278 sf~p~~~---------~a~~~~~se~~YE---~~~~pv~~~~lkp~tD------~p--nPk~g~g~lafs~Ds~y~aTrn 337 (447)
T KOG4497|consen 278 SFTPTDL---------EAHIWEESETIYE---QQMTPVKVHKLKPPTD------FP--NPKCGAGKLAFSCDSTYAATRN 337 (447)
T ss_pred ccCCCcc---------ccCccccchhhhh---hhhcceeeecccCCCC------CC--CcccccceeeecCCceEEeeec
Confidence 4444321 0011111100000 0000000000000000 11 1344577799999999999988
Q ss_pred C---CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCC
Q 001248 838 G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 914 (1114)
Q Consensus 838 d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~ 914 (1114)
| +.+.+||++..+....+. ...+|.+..|+| ....|+.+.....+++|.......+.. .+..-.|..+.|..+|
T Consensus 338 d~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g 414 (447)
T KOG4497|consen 338 DKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPG 414 (447)
T ss_pred CCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCC
Confidence 6 669999998866655543 567899999999 666777777677899999776444433 2333679999999999
Q ss_pred CEEEEEeCCCc
Q 001248 915 NVLVSSGADSQ 925 (1114)
Q Consensus 915 ~~l~s~s~D~~ 925 (1114)
..++-.+.|..
T Consensus 415 ~~i~l~~kDaf 425 (447)
T KOG4497|consen 415 EFIVLCGKDAF 425 (447)
T ss_pred cEEEEEcCCce
Confidence 99999999974
No 174
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.5e-17 Score=170.11 Aligned_cols=168 Identities=20% Similarity=0.266 Sum_probs=130.5
Q ss_pred EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEEEEeeccCCCceEEEEEecCCeEEE
Q 001248 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1114)
Q Consensus 459 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 537 (1114)
.+|.||.+.|+|++|+.||. +|++|+.|-.+.|||.-..++++.+ .||...|.++.|.|..+..++++|..|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 36889999999999999999 8999999999999999988888776 68999999999999988899999999999999
Q ss_pred EEcCCCCC----------eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc
Q 001248 538 WLYDNLGS----------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607 (1114)
Q Consensus 538 wd~~~~~~----------~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 607 (1114)
+|+...+. ...+..|...|..++..|++. +.+.++++||+|+-+|++...
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--------------------htfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--------------------HTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCC--------------------ceEEEecCCcceeeecccCCc
Confidence 99985322 122233344444444444443 568899999999999998732
Q ss_pred eEE-E-------eccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEcc
Q 001248 608 LLT-S-------IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 608 ~~~-~-------~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~ 648 (1114)
.-. . .......-...|+.++| +..+|++|+.|-..++||.+
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 110 0 01111223457899999 56789999999999999964
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=6.8e-17 Score=162.54 Aligned_cols=217 Identities=15% Similarity=0.283 Sum_probs=167.3
Q ss_pred ccccCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEccCCce----eeeeEeeccccCCeeEEEecCCCCeeEEEEecCC
Q 001248 414 ALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 488 (1114)
Q Consensus 414 ~~~~~h~~~V~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d 488 (1114)
.++.||+++|..++|+| +...||+|+.|.+|.||.+..+.. ......|.||...|.-|+|.|...+ +|+|++.|
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~D 153 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSD 153 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCC
Confidence 35889999999999999 778899999999999999975533 2345578999999999999999887 79999999
Q ss_pred CCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCC-eeEEEEEecCCCe
Q 001248 489 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADGTR 567 (1114)
Q Consensus 489 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~g~~ 567 (1114)
.+|.+||+.+|+.+-++. |..-|.+++|+. ||.++++.+.|+.|++||.++++.+..-..|.+ .-....|..+|.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred ceEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence 999999999999999988 999999999754 668999999999999999998877766545433 233344444443
Q ss_pred EEeeecccceeEEEecCCCCEEEEEe----CCCeEEEEECCCcc---eEEEeccCCCCCCcCeEEEcCCCCEEEE-EeCC
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAV-STND 639 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~~d 639 (1114)
+++.+ .+..+-+||...-+ ....+... ..|.---|.+|.++++. |-.|
T Consensus 230 ---------------------i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS---nGvl~PFyD~dt~ivYl~GKGD 285 (472)
T KOG0303|consen 230 ---------------------IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS---NGVLLPFYDPDTSIVYLCGKGD 285 (472)
T ss_pred ---------------------eeeeccccccccceeccCcccccCcceeEEeccC---CceEEeeecCCCCEEEEEecCC
Confidence 33333 57889999866533 23333322 34555667788877765 5569
Q ss_pred CcEEEEEccCCccceeeccc
Q 001248 640 NGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 640 g~i~iwd~~~~~~~~~~~~~ 659 (1114)
+.||.|.+.+....+..+..
T Consensus 286 ~~IRYyEit~d~P~~hyln~ 305 (472)
T KOG0303|consen 286 SSIRYFEITNEPPFVHYLNT 305 (472)
T ss_pred cceEEEEecCCCceeEEecc
Confidence 99999999887555555543
No 176
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.1e-15 Score=141.92 Aligned_cols=289 Identities=11% Similarity=0.110 Sum_probs=194.5
Q ss_pred ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
.|.+-+++|.+++++++..+|.|.+..+..-..... ...|+...... ..|+.+++.++|. ..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~iv~e--qahdgpiy~~~f~--d~~ 74 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKIVPE--QAHDGPIYYLAFH--DDF 74 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcceeec--cccCCCeeeeeee--hhh
Confidence 445567899999999999999999998864211100 11222222112 3499999999997 558
Q ss_pred EEEEeCCeEEEEEcCCCcc------cccc--C-----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec
Q 001248 833 VMSASGGKISLFNMMTFKT------MATF--M-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 833 l~~~~dg~i~iwd~~~~~~------~~~~--~-----~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
|++++||.|+=|....... +... + ..-.+|.++-..|..+.+|. ++.|+.++-||+++|+..++++
T Consensus 75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEEc
Confidence 8888899999887653221 1111 1 12346899999995555555 4479999999999999999999
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccc-cCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEE
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 978 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iw 978 (1114)
||++.|-+++--.....+.||++||+++|||..+.+.....-.. ....-.+. ..-.-.+..-+..+|+++....+.+|
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~-~g~wigala~~edWlvCGgGp~lslw 232 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPD-WGKWIGALAVNEDWLVCGGGPKLSLW 232 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcc-cCceeEEEeccCceEEecCCCceeEE
Confidence 99999999998556678999999999999999986643211110 00000100 01123566677889999999999999
Q ss_pred EcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCC
Q 001248 979 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1058 (1114)
Q Consensus 979 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1058 (1114)
.++..++...+... .++..+.|. ...+++++..+.|.-|.+. |.+...+. .++ -..++..+..+
T Consensus 233 hLrsse~t~vfpip---a~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~s----~~c~s~s~~~~ 296 (325)
T KOG0649|consen 233 HLRSSESTCVFPIP---ARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIP------VES----TACYSASWQTS 296 (325)
T ss_pred eccCCCceEEEecc---cceeEeeee--cceEEEeccccceeeeeec-cEEEEecc------CCc----cceeeecccCC
Confidence 99999999988764 467778884 4467778888899999875 44444433 111 11123333332
Q ss_pred CCCeEEEEeCCCcEEEEe
Q 001248 1059 EPNEFALGLSDGGVHVFE 1076 (1114)
Q Consensus 1059 d~~~l~s~~~Dg~v~vW~ 1076 (1114)
--++|-.++-.+.+.++.
T Consensus 297 p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 297 PIKFISIAGFSNKLHILK 314 (325)
T ss_pred ceEEEEecccceeeeeee
Confidence 234566666667766653
No 177
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.9e-15 Score=163.08 Aligned_cols=600 Identities=12% Similarity=0.096 Sum_probs=337.9
Q ss_pred CcceeEecc-CCCCceEEEEcCC-----------CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCccccccc
Q 001248 348 PKTVTRTLN-QGSSPMSMDFHPV-----------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAAL 415 (1114)
Q Consensus 348 ~~~~~~~~~-h~~~v~~v~~spd-----------g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 415 (1114)
.-+.++.+. |...|+.+.|.|- .+.+||++...|.|.+||...+..+. .
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~-------------------~ 104 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN-------------------W 104 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh-------------------h
Confidence 344455555 8899999999773 34578889999999999999887665 3
Q ss_pred ccCCCCCeeEEEEcC---CC-CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 416 VKDPGVSVNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 416 ~~~h~~~V~~l~~sp---dg-~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
+..|.++|..++|-+ +. ..|++-....++.+|+..+|+.+- ....-.....|+.+.|-+.. .+..-+..|.+
T Consensus 105 l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DPfd~r-h~~~l~s~g~v 180 (1062)
T KOG1912|consen 105 LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDPFDSR-HFCVLGSKGFV 180 (1062)
T ss_pred hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCCCCcc-eEEEEccCceE
Confidence 778889999999876 44 456666777889999999998665 33334456677888886554 34444445666
Q ss_pred EEEeCCC-------CcceeEeecccc----------------C-------EEEEeeccCCCceEEEEEecCCeEEEEEcC
Q 001248 492 KVWDATN-------GAKQYIFEGHEA----------------P-------VYSVCPHHKENIQFIFSTALDGKIKAWLYD 541 (1114)
Q Consensus 492 ~iwd~~~-------~~~~~~~~~h~~----------------~-------v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 541 (1114)
.+-+.-. |+..+.-..|.. . ..+..|.+.+.-+-++.....+.+.++|++
T Consensus 181 l~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle 260 (1062)
T KOG1912|consen 181 LSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLE 260 (1062)
T ss_pred EEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcch
Confidence 5555321 222222222222 0 011222233332334445567778899988
Q ss_pred CCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC----------------
Q 001248 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---------------- 605 (1114)
Q Consensus 542 ~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------------- 605 (1114)
-..+......+.+.+.-+.+-|++++ ..|+++-.+|.+.+|-.+.
T Consensus 261 ~~~~l~vvpier~~akfv~vlP~~~r-------------------d~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl 321 (1062)
T KOG1912|consen 261 YECCLAVVPIERGGAKFVDVLPDPRR-------------------DALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDL 321 (1062)
T ss_pred hhceeEEEEeccCCcceeEeccCCCc-------------------ceEEEEecCCeEEEEEeeccCccccccchhhcccc
Confidence 77666666666665555666666543 3588888999999997554
Q ss_pred cceEEEeccCCCCCCcCeEEEcCC-CCEEEEEeCCCcEEEEEccCCccceeeccccccccc---------cCCCCCCCCc
Q 001248 606 VQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS---------RTSENSKPTI 675 (1114)
Q Consensus 606 ~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 675 (1114)
+.....+..-.... .......|. ...++.--.+|.+.+|.+.++........+...... .........+
T Consensus 322 ~~Q~~~vr~m~~~r-p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~L 400 (1062)
T KOG1912|consen 322 GEQVHVVRPMEEFR-PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISL 400 (1062)
T ss_pred ccceEEEeechhcc-cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccch
Confidence 22222221111111 122333343 445555566788899998876322111110000000 0000000011
Q ss_pred cchhhhhhhhccccccccccccccccC---CCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccccc
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIP---GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1114)
+.++ +-.....+.+..++.... ...+.......-..++.|...|+|.++|+.+......+. .|..
T Consensus 401 S~dg-----~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs-------vht~ 468 (1062)
T KOG1912|consen 401 SDDG-----SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS-------VHTS 468 (1062)
T ss_pred hhcC-----CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc-------cccc
Confidence 2221 001111111111111100 001111111123457889999999999998765544443 3889
Q ss_pred ceEEEEEccCcceeeecccC--ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC
Q 001248 753 KISRLIFTNSGNAILALASN--AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~ 830 (1114)
.|.++.|..+...+-.+... ..-. .....+.+-++.+|.-+...-.......+|+.+..|..+
T Consensus 469 ~VkgleW~g~sslvSfsys~~n~~sg---------------~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~ 533 (1062)
T KOG1912|consen 469 LVKGLEWLGNSSLVSFSYSHVNSASG---------------GVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSG 533 (1062)
T ss_pred ceeeeeeccceeEEEeeecccccccc---------------ceeeeEEEEEcccccccccccCCCCCcCcceeeeecccC
Confidence 99999998777644322221 0000 001123455667776554332223467899999999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEe-cCCC----------------cEEEEEeCCCcEEEEEccc-
Q 001248 831 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDN----------------NIIAIGMDDSSIQIYNVRV- 891 (1114)
Q Consensus 831 ~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~----------------~~la~g~~dg~v~iwd~~~- 891 (1114)
+|++..- +.-+.+||+++..+++...-.-.-|+.+.|+ | .- +..+..+ +..+++.+..
T Consensus 534 ~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~n~vv~ds--~es~~~~~~~~ 610 (1062)
T KOG1912|consen 534 RYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSENLVVLDS--VESRIYHITLS 610 (1062)
T ss_pred ceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhhceeeecc--ccchheehhhh
Confidence 9999998 8889999999888777665444458999998 3 11 1333333 2333333321
Q ss_pred ------ceEE-EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC
Q 001248 892 ------DEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 892 ------~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
+... ...+...-.+..++|- +..|+.|..+|.+.+||+....... ....+. +. .......+-|..
T Consensus 611 a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg--~~d~p~-~r---a~~l~~~~ipG~ 682 (1062)
T KOG1912|consen 611 ALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRG--VRDSPD-PR---AHSLTFPQIPGD 682 (1062)
T ss_pred hhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccC--ccCCCC-ch---hhheecccCCCC
Confidence 1110 1111111233446774 6789999999999999987643221 111111 11 122334445554
Q ss_pred cEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeee
Q 001248 965 IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 965 ~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
..+++-....+-+||.+....+..+.....+..+..+.+......++. .|.++|+-.+......
T Consensus 683 ~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l~--~d~~~Rf~~m~mks~~ 746 (1062)
T KOG1912|consen 683 HTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVLP--NDNKERFRVMPMKSPP 746 (1062)
T ss_pred ceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceecC--CCCceeEEeccccCCc
Confidence 455555666789999998888877743233445566666554444432 3447777766655443
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=1.7e-15 Score=168.06 Aligned_cols=279 Identities=10% Similarity=0.119 Sum_probs=178.2
Q ss_pred cccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecc-cCceEEEEeecccccCCCCCccccc
Q 001248 717 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASV 795 (1114)
Q Consensus 717 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1114)
.++...++.|.+|++...........+. .......++++|+++.|++++ .++.|.+|++..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~------------- 66 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD------------- 66 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-------------
Confidence 3445678999999996432222222221 234567889999999887664 468888888741
Q ss_pred cccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCC-Ccc---ccccCCCCCCeEEEEEec
Q 001248 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKT---MATFMPPPPAATFLAFHP 869 (1114)
Q Consensus 796 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~-~~~---~~~~~~~~~~i~~l~~sp 869 (1114)
+|.+..... .........++++|+++++++++ ++.|.+|++.+ +.. +..+. +.....+++++|
T Consensus 67 --------~g~l~~~~~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p 135 (330)
T PRK11028 67 --------DGALTFAAE--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP 135 (330)
T ss_pred --------CCceEEeee--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence 111100000 00223456899999999999887 78999999964 222 22222 223467789999
Q ss_pred CCCcEE-EEEeCCCcEEEEEcccceEEE-------eecccccCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCC--cccc
Q 001248 870 QDNNII-AIGMDDSSIQIYNVRVDEVKS-------KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGW--EKQK 938 (1114)
Q Consensus 870 ~d~~~l-a~g~~dg~v~iwd~~~~~~~~-------~l~~h~~~V~~l~~s~d~~~l~s~s~-D~~v~iwd~~~~--~~~~ 938 (1114)
+++++ ++...++.|.+||+.+...+. .... ......++|+|||++|+++.. +++|.+|+++.. +...
T Consensus 136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 77666 555567999999997633221 1111 234568999999999988876 899999999742 2211
Q ss_pred ccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCc----eeeeeecCCCCcCeeEEEECCCCCEEEE
Q 001248 939 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDSQLVYA 1012 (1114)
Q Consensus 939 ~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1114)
...+...............+.|+|||++|+++ .++.|.+|++.... .+..... ......++|+|||++|++
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence 11111111111111123468999999999995 46789999986443 2222221 234568999999999998
Q ss_pred EEc-CCeEEEEEcC--CCee
Q 001248 1013 CFL-DATVCVFSAA--NLKL 1029 (1114)
Q Consensus 1013 ~s~-Dg~I~vwd~~--~~~~ 1029 (1114)
++. +++|.+|+++ ++.+
T Consensus 291 a~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 291 AGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEccCCcEEEEEEcCCCCcE
Confidence 876 8999999874 4444
No 179
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.8e-15 Score=151.70 Aligned_cols=241 Identities=14% Similarity=0.203 Sum_probs=184.5
Q ss_pred CCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEcccceEE
Q 001248 818 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 895 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg--~v~iwd~~~~~~~ 895 (1114)
...+..+.|+.|...|..|+....++|.................|..+-|+. .++|..+.+. .+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 3446667799999999999966678888876554333333445677777875 4777666554 4999999988888
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-E--eC
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HE 972 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~--~d 972 (1114)
..+. ...+|.+|.++ .++|+++=.+. |.|||+.+-+. +.....-.+....+.++.+++++.|||. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKL-----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccccee-----ehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7776 45678899986 45677666665 99999998443 2222222122234566666667789998 3 56
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCe-EEEEEcCCCeeeEEeCCCcccCCCCCCCCccce
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1051 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1051 (1114)
|.|.+||+.+.+.+..+. .|.+++.+++|+++|.+||++|+.|+ ||||.+.+|+.+..++...+ + +...
T Consensus 153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~Iy 222 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIY 222 (391)
T ss_pred ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEE
Confidence 899999999999988887 89999999999999999999999997 89999999999999883333 2 4455
Q ss_pred EEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1052 VIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1052 ~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+++|+| |+++|++.+..++|++|.+....
T Consensus 223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 999999 68999999999999999998866
No 180
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=5e-16 Score=152.46 Aligned_cols=344 Identities=13% Similarity=0.182 Sum_probs=235.7
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEE-EEeCCCcEEEEEccCCccceeec
Q 001248 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
..+|+|+|+++++.+.- .+.|-|..+.+..+.+..- ..|.-+.|..|.-+++ ....++.|.+|++.... -.-.+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-w~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-WYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---HHhhheeeeccceeeeeeeeccceEEEEEeecce-eEEEe
Confidence 46788888899988866 7888888887766555432 3477789998876655 45778899999987652 11111
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCC
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1114)
.
T Consensus 88 d------------------------------------------------------------------------------- 88 (447)
T KOG4497|consen 88 D------------------------------------------------------------------------------- 88 (447)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred ccccccccCccccccceEEEEEccCcceeeeccc-CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCC
Q 001248 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 816 (1114)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~ 816 (1114)
.....+..+.+||||+.++..++ +-.|.||.+.+.. +..+..
T Consensus 89 -----------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--------------------~~~~~~------ 131 (447)
T KOG4497|consen 89 -----------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--------------------GYLLPH------ 131 (447)
T ss_pred -----------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--------------------eEEecc------
Confidence 13467788999999977766555 7888888876321 112211
Q ss_pred CCCCccEEEEeeCCCEEEEEe--C--CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC--CCcEEEEEcc
Q 001248 817 PEEAVPCFALSKNDSYVMSAS--G--GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVR 890 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~--d--g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~--dg~v~iwd~~ 890 (1114)
....+..++|++||++.+..+ | ..+.|..-+....++.+....-..+.+.|+| ||+.||+=.. +-.|+.|.
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP-dg~~laVwd~~Leykv~aYe-- 208 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP-DGNWLAVWDNVLEYKVYAYE-- 208 (447)
T ss_pred cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC-CCcEEEEecchhhheeeeee--
Confidence 334567899999999999887 3 2255555556666777776777789999999 8877775322 11222221
Q ss_pred cceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc--------------------------------
Q 001248 891 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-------------------------------- 938 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~-------------------------------- 938 (1114)
-.-.+..++|+|.+++|+.|+.|+.++|.|--+.+...
T Consensus 209 ----------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 209 ----------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred ----------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 12347789999999999999999999887643332211
Q ss_pred --------------------------ccccccCCCCCCCCCCceEEEEccCCcEEEEEeC---CeEEEEEcCCCceeeee
Q 001248 939 --------------------------NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE---TQLAIFETTKLECVKQW 989 (1114)
Q Consensus 939 --------------------------~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d---~~i~iwd~~~~~~~~~~ 989 (1114)
...++...........+..++|++|..|+++-.| ..+-+||++..+....+
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 0001111111222346788999999999999655 46999999988876655
Q ss_pred ecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC
Q 001248 990 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1069 (1114)
Q Consensus 990 ~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D 1069 (1114)
.- ..+|....|.|....|+.+.....+++|..+....++.-. .| .....+.|+- +|..++..+.|
T Consensus 359 iQ---k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~------~G-----F~i~~l~W~~-~g~~i~l~~kD 423 (447)
T KOG4497|consen 359 IQ---KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK------KG-----FNIQKLQWLQ-PGEFIVLCGKD 423 (447)
T ss_pred hh---ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCC------CC-----ceeeeEEecC-CCcEEEEEcCC
Confidence 42 5689999999999999888878889999987755554322 12 3344899987 57888888888
Q ss_pred Cc
Q 001248 1070 GG 1071 (1114)
Q Consensus 1070 g~ 1071 (1114)
.-
T Consensus 424 af 425 (447)
T KOG4497|consen 424 AF 425 (447)
T ss_pred ce
Confidence 63
No 181
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.6e-17 Score=187.07 Aligned_cols=278 Identities=13% Similarity=0.173 Sum_probs=210.5
Q ss_pred cCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcce----eeecccCceEEEEeecccccCCCCCcccccc
Q 001248 721 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA----ILALASNAIHLLWKWQRTERNSSGKATASVA 796 (1114)
Q Consensus 721 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~----l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 796 (1114)
+.+.++.+|.+.............. .....+-..++|.+.|.. |+.+.+||.|.+|+.....
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s--~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~------------ 101 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGS--LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII------------ 101 (1049)
T ss_pred ccccccceeeecccCcccccccccc--ccccccceeeeecccCCCccceeeccccCCceEEecchhhc------------
Confidence 4556777777665443321111110 124567788999988876 7888889999999865310
Q ss_pred ccccCCCCCccccccCCCCCCCCCccEEEEeeCCC-EEEEEe-CCeEEEEEcCCCccccccC--CCCCCeEEEEEecCCC
Q 001248 797 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDN 872 (1114)
Q Consensus 797 ~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~-~l~~~~-dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~ 872 (1114)
.+...........|.+.|..+.|++... +||+|+ ||.|.|||+...+...++. .....|.+++|+....
T Consensus 102 -------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq 174 (1049)
T KOG0307|consen 102 -------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS 174 (1049)
T ss_pred -------cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh
Confidence 0110000111123999999999999776 899998 8999999998866655552 2457899999998778
Q ss_pred cEEEEEeCCCcEEEEEcccceEEEeeccccc--CeeEEEEcCCC-CEEEEEeCCC---cEEEEeCCCCccccccccccCC
Q 001248 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK--RITGLAFSHAL-NVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPT 946 (1114)
Q Consensus 873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~--~V~~l~~s~d~-~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~ 946 (1114)
++||+++.+|.+.|||++..+.+..+..|.+ .+..|+|+|++ ..|++++.|. .|.+||++.- ...+++..
T Consensus 175 hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----ssP~k~~~ 250 (1049)
T KOG0307|consen 175 HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----SSPLKILE 250 (1049)
T ss_pred HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----CCchhhhc
Confidence 8999999999999999999988888877765 46789999986 4566666553 6999998763 34566777
Q ss_pred CCCCCCCCceEEEEccCC-cEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCC-EEEEEEcCCeEEEEE
Q 001248 947 GRTPTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFS 1023 (1114)
Q Consensus 947 ~~~~~~~~i~~v~fspdg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~s~Dg~I~vwd 1023 (1114)
+|.. .|.++.|++.+ ++|++ +.|+.+.+|+.++++.+..+.. ...++..+.|+|..- .+++++-||.|.||.
T Consensus 251 ~H~~---GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 251 GHQR---GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred cccc---ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhhheeccceeeee
Confidence 8875 89999999976 77777 6999999999999999999874 468999999999665 788999999999999
Q ss_pred cCCCe
Q 001248 1024 AANLK 1028 (1114)
Q Consensus 1024 ~~~~~ 1028 (1114)
+.++.
T Consensus 326 l~~~~ 330 (1049)
T KOG0307|consen 326 LQGTD 330 (1049)
T ss_pred eecCC
Confidence 87665
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=2.2e-16 Score=158.88 Aligned_cols=246 Identities=14% Similarity=0.199 Sum_probs=175.4
Q ss_pred CCcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEE
Q 001248 347 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 347 ~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
++...-..-+|+++|..++|+|-....+|+|+.|.+|.||++..+..... ..-+...|.||...|--+
T Consensus 70 ~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------ltepvv~L~gH~rrVg~V 137 (472)
T KOG0303|consen 70 MDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------LTEPVVELYGHQRRVGLV 137 (472)
T ss_pred cCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------cccceEEEeecceeEEEE
Confidence 34444455679999999999998887899999999999999977654431 111122589999999999
Q ss_pred EEcC-CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 427 IWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 427 ~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
+|+| -...|++++.|.+|.|||+.+|+.+. ++. |...|+++.|+.||. +++|.+.|+.|+|||.++++.+..-
T Consensus 138 ~wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 138 QWHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred eecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeec
Confidence 9999 45678999999999999999998765 565 999999999999999 7999999999999999999999888
Q ss_pred eccccCEEEEeeccCCCceEEEEEe---cCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
.+|.+.=..-++ +-.+|.++.+|- .++.+-+||..+.+....+..- .....+..--+
T Consensus 212 ~~heG~k~~Rai-fl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-------------------DtSnGvl~PFy 271 (472)
T KOG0303|consen 212 VAHEGAKPARAI-FLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-------------------DTSNGVLLPFY 271 (472)
T ss_pred ccccCCCcceeE-EeccCceeeeccccccccceeccCcccccCcceeEEe-------------------ccCCceEEeee
Confidence 788754322121 234556444443 3678999998765543321110 00112233344
Q ss_pred cCCCCEEEE-EeCCCeEEEEECCCcce-EEEeccCCCCCCcCeEEEcCCC
Q 001248 583 DTTKNRFLA-AGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDG 630 (1114)
Q Consensus 583 ~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~d~ 630 (1114)
+++.+.++. |-.|+.|+.|.+....+ +.-+.......+-..+.|-|..
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 555555554 55899999999876552 3333333333445677777753
No 183
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=1.7e-16 Score=151.28 Aligned_cols=303 Identities=11% Similarity=0.148 Sum_probs=197.8
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee-ccccCEEEEeeccCCCceEEEEEecCCeEE
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIK 536 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~ 536 (1114)
...+.+|.+.|+++.|-.++. |.+|..-|.|++|++++.+.+..+. .|...|+.+...+ + ..+.+-+.|..+.
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p--~-d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP--N-DSLDTQGRDPLLI 80 (323)
T ss_pred eeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeecC--C-cchhhcCCCceEE
Confidence 346789999999999998876 8999999999999999998888888 5677888887433 2 4789999999999
Q ss_pred EEEcCCCCCeeeecCCCCeeEEEEEe-----cCCCeEEeeecccceeEEEecCCCCEEEEEeCCC-eEEEEECCCcceEE
Q 001248 537 AWLYDNLGSRVDYEAPGRWCTTMAYS-----ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-SIKFWDMDSVQLLT 610 (1114)
Q Consensus 537 ~wd~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~ 610 (1114)
+|++.-...... +.-.+.++.|. +.++.. ...++.-++.. .+++-|......+.
T Consensus 81 lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~-----------------eqll~yp~rgsde~h~~D~g~~tqv~ 140 (323)
T KOG0322|consen 81 LWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNS-----------------EQLLEYPSRGSDETHKQDGGDTTQVQ 140 (323)
T ss_pred EEEccCcceEEE---eeeeccccccccceeccCCCcc-----------------hhheecCCcccchhhhhccCccceeE
Confidence 999875332221 11122222222 222100 01111111100 02222322222222
Q ss_pred Eecc--CCCCCCcCeEEEcC-CC--CEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhh
Q 001248 611 SIDA--DGGLPASPRIRFNK-DG--CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAA 685 (1114)
Q Consensus 611 ~~~~--~~~~~~v~~~~~s~-d~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1114)
.... ....+.+.+..+.- ++ -++++|.++|.+.+||+.++...+ .+.....
T Consensus 141 i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~-~~~~~~k----------------------- 196 (323)
T KOG0322|consen 141 IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII-QLPQSSK----------------------- 196 (323)
T ss_pred ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee-ccccccc-----------------------
Confidence 2211 11122344444322 22 256678889999999998873222 1211000
Q ss_pred ccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcce
Q 001248 686 ATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 765 (1114)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 765 (1114)
...+...|..+|.++.|.+.-..
T Consensus 197 ---------------------------------------------------------v~~~~ash~qpvlsldyas~~~r 219 (323)
T KOG0322|consen 197 ---------------------------------------------------------VESPNASHKQPVLSLDYASSCDR 219 (323)
T ss_pred ---------------------------------------------------------cccchhhccCcceeeeechhhcC
Confidence 00111237888999999887777
Q ss_pred eeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEE
Q 001248 766 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLF 844 (1114)
Q Consensus 766 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iw 844 (1114)
=++++.+..+..|+++....... -+..+. + ..-.+..+.+-||++.+|+++ |+.||||
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq---------------~~~e~~--l----knpGv~gvrIRpD~KIlATAGWD~RiRVy 278 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQ---------------IRKEIT--L----KNPGVSGVRIRPDGKILATAGWDHRIRVY 278 (323)
T ss_pred CcCCCccccceeeeeccccCccc---------------ccceEE--e----cCCCccceEEccCCcEEeecccCCcEEEE
Confidence 78888888888888764211100 000111 1 234577889999999999999 9999999
Q ss_pred EcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 001248 845 NMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 845 d~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~ 889 (1114)
..++...+..++.|...|.+++|+| +..++|.++.|++|.+|++
T Consensus 279 swrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 279 SWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred EeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 9999999999999999999999999 8899999999999999986
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.1e-16 Score=156.46 Aligned_cols=198 Identities=13% Similarity=0.184 Sum_probs=149.2
Q ss_pred EEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC--CCCeEEEEeCCCeEEEEEcc
Q 001248 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYH 450 (1114)
Q Consensus 373 ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~dg~i~iwd~~ 450 (1114)
.+|++-..|.|++||..+++.+. .+++|...++.++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~-------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLE-------------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhh-------------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 58889999999999999988776 3788888899999987 46678999999999999999
Q ss_pred CCceeeeeEeecccc-CCeeEEEecCCCCeeEEEEec----CCCCEEEEeCCCCcc-eeEe-eccccCEEEEeeccCCCc
Q 001248 451 GGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG----DDKTIKVWDATNGAK-QYIF-EGHEAPVYSVCPHHKENI 523 (1114)
Q Consensus 451 ~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~ 523 (1114)
+.....+. ...+|. .+..+++..-.++ ++++|. .+-.|.+||++..+. +..+ ..|...|++++|+|+..
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87655433 345555 4667777765666 677765 356799999998766 5544 57999999999999755
Q ss_pred eEEEEEecCCeEEEEEcCCCCCe---eeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEE
Q 001248 524 QFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600 (1114)
Q Consensus 524 ~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 600 (1114)
++|++|+.||.|.++|+...... ...-.+...|..+.|..++- ..+.+.+..++..+
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~y--------------------krI~clTH~Etf~~ 238 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKY--------------------KRIMCLTHMETFAI 238 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCc--------------------ceEEEEEccCceeE
Confidence 79999999999999999764221 11122333455555555441 34888889999999
Q ss_pred EECCCcceEEEec
Q 001248 601 WDMDSVQLLTSID 613 (1114)
Q Consensus 601 wd~~~~~~~~~~~ 613 (1114)
|+++.+.....+.
T Consensus 239 ~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 239 YELEDGSEETWLE 251 (376)
T ss_pred EEccCCChhhccc
Confidence 9999887655554
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.1e-16 Score=155.37 Aligned_cols=151 Identities=18% Similarity=0.265 Sum_probs=117.6
Q ss_pred EEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEE
Q 001248 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 560 (1114)
Q Consensus 481 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 560 (1114)
.++++-..|+|++||..+++.+..++++...++.+.|........+.+++.||+|++||++.......+...
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-------- 113 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-------- 113 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc--------
Confidence 678888899999999999999999999999999999876545578999999999999999976554332211
Q ss_pred EecCCCeEEeeecccceeEEEecCCCCEEEEEe----CCCeEEEEECCCcce-EEEeccCCCCCCcCeEEEcC-CCCEEE
Q 001248 561 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNK-DGCLLA 634 (1114)
Q Consensus 561 ~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~ 634 (1114)
++......+++.+..++.+++|. .+-.|.+||++..+. +..+. ..|...|+++.|+| +.++|+
T Consensus 114 ----------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 114 ----------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred ----------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEE
Confidence 11122455555555666777765 478899999998776 44443 34567899999999 678999
Q ss_pred EEeCCCcEEEEEccCC
Q 001248 635 VSTNDNGIKILATSDG 650 (1114)
Q Consensus 635 ~~~~dg~i~iwd~~~~ 650 (1114)
+|+.||.|.+||+...
T Consensus 183 SGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKD 198 (376)
T ss_pred eecccceEEeeecCCC
Confidence 9999999999998644
No 186
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=5e-16 Score=149.87 Aligned_cols=257 Identities=15% Similarity=0.234 Sum_probs=185.0
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecC-------CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEE
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNV-------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~d-------g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1114)
+.|.++||.++-+|-.+++|+|...+ ..+.||.+........ . ........+-..+-+.|.|+.
T Consensus 60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~-------~tlE~v~~Ldteavg~i~cve 130 (370)
T KOG1007|consen 60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--S-------STLECVASLDTEAVGKINCVE 130 (370)
T ss_pred hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--c-------chhhHhhcCCHHHhCceeeEE
Confidence 34789999999999999899987653 2367888764322100 0 001111112234556999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEccCCceeeeeEe---eccccCCeeEEEecC--CCCeeEEEEecCCCCEEEEeCCCCcce
Q 001248 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE---IDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQ 502 (1114)
Q Consensus 428 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~---l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~ 502 (1114)
|.|+++.||+-. |..|.+|++..+..+..... -.+|....++-+|+| ||. .+++. .|++++.||+++.++.
T Consensus 131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt-~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATT-SDSTLQFWDLRTMKKN 206 (370)
T ss_pred EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEe-CCCcEEEEEccchhhh
Confidence 999999999886 77899999998765321111 123566788899998 566 35544 4889999999998887
Q ss_pred eEe-eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEE
Q 001248 503 YIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1114)
Q Consensus 503 ~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~ 580 (1114)
..+ ..|...|..+.|+|... .+|++|+.||.|++||.+..+ ++..+..|.++|.++.|.|...
T Consensus 207 ~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd-------------- 271 (370)
T KOG1007|consen 207 NSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD-------------- 271 (370)
T ss_pred cchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc--------------
Confidence 766 46889999999887664 689999999999999998754 5568889999999999988654
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcc-----------------------------eEEEeccCCCCCCcCeEEEcC-CC
Q 001248 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------------------LLTSIDADGGLPASPRIRFNK-DG 630 (1114)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~s~-d~ 630 (1114)
+++++++.|..|.+|....-. .+.++.. +...|.+++||. |-
T Consensus 272 ------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 272 ------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADP 343 (370)
T ss_pred ------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCC
Confidence 357778888888888653211 1123332 356799999998 55
Q ss_pred CEEEEEeCCCcEEEEEc
Q 001248 631 CLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 631 ~~l~~~~~dg~i~iwd~ 647 (1114)
-++++-+.||.+.|=.+
T Consensus 344 WiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 344 WIFASLSYDGRVIISSV 360 (370)
T ss_pred eeEEEeccCceEEeecC
Confidence 66778899999987654
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=6.5e-16 Score=173.73 Aligned_cols=320 Identities=16% Similarity=0.251 Sum_probs=218.5
Q ss_pred CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc---ccCEEEEeec
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPH 518 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~ 518 (1114)
..|..||... ..+...+-..+.|+|-.. .++++...-.|+|||.+.++.+..|..+ ...|+.+++-
T Consensus 1050 ~~i~~W~~~~---------~~~n~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~li 1118 (1387)
T KOG1517|consen 1050 NPIGNWDQKF---------MTGNNQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELI 1118 (1387)
T ss_pred ccccchHHHH---------HhcCCCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeee
Confidence 3466777543 223333566788888888 5788877778999999999998877654 3568888887
Q ss_pred cCCCceEEEEEecCCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCe
Q 001248 519 HKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597 (1114)
Q Consensus 519 ~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 597 (1114)
...|..++++++.||.|++|+--... ....+-..-..+.++...+.|. . ..+.|.....+|+++|+-..
T Consensus 1119 Ne~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~---------~-~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1119 NEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT---------G-LVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred cccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC---------C-eeeehhhhCCeEEecCCeeE
Confidence 77787899999999999999643221 1111111111122222222221 2 56778888888999888999
Q ss_pred EEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCcc
Q 001248 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 676 (1114)
Q Consensus 598 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1114)
|+|||......+..+..... ..+++++-+- .|+++++|..||.|++||.+.....
T Consensus 1189 IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------------- 1244 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------------- 1244 (1387)
T ss_pred EEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc-----------------------
Confidence 99999998888877765432 3456665544 5799999999999999998654110
Q ss_pred chhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccc--e
Q 001248 677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK--I 754 (1114)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--i 754 (1114)
..|..|. .|+.. |
T Consensus 1245 -----------------------------------------------s~v~~~R------------------~h~~~~~I 1259 (1387)
T KOG1517|consen 1245 -----------------------------------------------SLVCVYR------------------EHNDVEPI 1259 (1387)
T ss_pred -----------------------------------------------ccceeec------------------ccCCcccc
Confidence 1112221 13333 8
Q ss_pred EEEEEccCcce-eeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEE
Q 001248 755 SRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 833 (1114)
Q Consensus 755 ~~l~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l 833 (1114)
..+.+.+.|-. |++++.+|.|++||+........-. .+.-|+ ..+..+++.++++...+
T Consensus 1260 v~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~-----iv~~~~---------------yGs~lTal~VH~hapii 1319 (1387)
T KOG1517|consen 1260 VHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT-----IVAHWE---------------YGSALTALTVHEHAPII 1319 (1387)
T ss_pred eeEEeecCCCcceeeeccCCeEEEEecccCcccccce-----eeeccc---------------cCccceeeeeccCCCee
Confidence 88888886655 9999999999999987531100000 000010 12358999999999999
Q ss_pred EEEeCCeEEEEEcCCCccccccCC-------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce
Q 001248 834 MSASGGKISLFNMMTFKTMATFMP-------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 893 (1114)
Q Consensus 834 ~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~ 893 (1114)
|+|+.+.|+||++.. +.+..++. ..+.+.|++|+| -.-+||+|+.|.+|.||.....+
T Consensus 1320 AsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1320 ASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 999999999999864 43333322 235689999999 88899999999999999876543
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=6.8e-15 Score=163.19 Aligned_cols=250 Identities=11% Similarity=0.104 Sum_probs=163.4
Q ss_pred CCccEEEEeeCCCEEEEEe--CCeEEEEEcC-CCcc--ccccCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEccc-
Q 001248 819 EAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV- 891 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~-~~~~--~~~~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~~- 891 (1114)
.....++++||+++|++++ ++.|.+|++. ++.. ..... .......++|+| ++++|++++ .++.|.+|++.+
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCC
Confidence 4567789999999988775 6889999986 3332 22222 233567899999 777776665 588999999974
Q ss_pred c---eEEEeecccccCeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccccc---cccccCCCCCCCCCCceEEEEccCC
Q 001248 892 D---EVKSKLKGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQKN---RFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 892 ~---~~~~~l~~h~~~V~~l~~s~d~~~l~s~-s~D~~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
+ +.+..+.+ .....+++++|++++++++ ..++.|.+||+++...... .......+ .....++|+|||
T Consensus 113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pdg 186 (330)
T PRK11028 113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPNQ 186 (330)
T ss_pred CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCCC
Confidence 2 22333332 2346778999999988654 4669999999986322110 11111222 245789999999
Q ss_pred cEEEEE--eCCeEEEEEcCC--Cc--eeeeeecC----CCCcCeeEEEECCCCCEEEEEEc-CCeEEEEEcCCCeeeEEe
Q 001248 965 IHFLVV--HETQLAIFETTK--LE--CVKQWVPR----ESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 965 ~~l~~~--~d~~i~iwd~~~--~~--~~~~~~~~----~h~~~v~~l~~s~dg~~l~s~s~-Dg~I~vwd~~~~~~~~~~ 1033 (1114)
++++++ .++.|.+|++.. ++ .+..+... .+......+.|+|||++|+++.. ++.|.+|+++......++
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~ 266 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF 266 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence 999884 478999999973 32 23332211 11223456899999999998864 689999999643311111
Q ss_pred CCCcccCCCCCCCCccceEEEecCCCCCeEEEEeC-CCcEEEEeccCCCCcc
Q 001248 1034 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~-Dg~v~vW~i~~~~~~~ 1084 (1114)
. ...+.+ ..|..+.++| |+++|+++.. +++|.+|++....+.+
T Consensus 267 ~--~~~~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 267 E--GHQPTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred e--EEEecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 1 011112 2333688999 6788887665 8999999986544333
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1e-15 Score=153.32 Aligned_cols=168 Identities=16% Similarity=0.236 Sum_probs=124.9
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC------CcceeEee-ccccCEEEEeeccCCCceEEEEEecC
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALD 532 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d 532 (1114)
.+.+|.+.|+++.||.+++ +|++|+.|..+++|+++. .+++.... .|...|.+++|... ..++++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~--~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~--N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDR--FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE--NRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCe--EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC--CeeEecCCCc
Confidence 4678999999999999988 899999999999999863 45555443 35689999998543 3799999999
Q ss_pred CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc-eEEE
Q 001248 533 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTS 611 (1114)
Q Consensus 533 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 611 (1114)
++|..-|+++.+.+..+..... .+.+.-+..+|..+.|++.+.++.|.+||.+... .+..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~-------------------~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNN-------------------RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred ceeEeeecccceeeeeecccCc-------------------ccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 9999999998665543322110 1244445566667789999999999999988755 3322
Q ss_pred eccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCC
Q 001248 612 IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 612 ~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+-.........++.|+| .-.+|++.+..+.+.+||.+..
T Consensus 188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 22122223567899999 4567888888899999998755
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.2e-16 Score=168.74 Aligned_cols=229 Identities=16% Similarity=0.279 Sum_probs=180.0
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEcc-----CCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-----GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~-----~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 489 (1114)
.+..|.+.|++++|.|...-|++++.||++.+|++. ....+.++.+|.+|.++|.|++.++++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 477899999999999999999999999999999993 3445678889999999999999999999 799999999
Q ss_pred CEEEEeCCC------C----cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC--CCeeE
Q 001248 490 TIKVWDATN------G----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GRWCT 557 (1114)
Q Consensus 490 ~i~iwd~~~------~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~ 557 (1114)
+|+.|++.. . .....+.||.+.|+.++++..+ ..|++++.||+++.|+...... ..+... .....
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999996542 1 2335788999999999988777 4799999999999998876555 222111 11111
Q ss_pred EEEEecCC--------C---------------eEEee------ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcce
Q 001248 558 TMAYSADG--------T---------------RTYQG------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 608 (1114)
Q Consensus 558 ~~~~s~~g--------~---------------~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 608 (1114)
++.+.... + .++.. .....+..+..+|...+.+++.+|+.|+++|..+++.
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence 22111110 0 11110 1123566688889999999999999999999999999
Q ss_pred EEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 609 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 609 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+.....| ...++++++.|+|-+|++++.|+.+++|.+...
T Consensus 524 l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 524 LHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred chheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence 9888766 457999999999999999999999999987655
No 191
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=3.7e-17 Score=178.98 Aligned_cols=282 Identities=17% Similarity=0.231 Sum_probs=204.7
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd 539 (1114)
.+.+|...|+|+.|...|. ++++|+.|..++||.++++.++.++.||.+.|+.++.+. +..++++++.|..|++|.
T Consensus 185 rLlgH~naVyca~fDrtg~--~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~--~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGR--YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS--NNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHhhhhheeeeeeccccc--eEeecCccceeeeeeccchhhhccCCCCccccchhccch--hhhhhhhcccCceEEEEe
Confidence 5789999999999999999 799999999999999999999999999999999999743 336899999999999999
Q ss_pred cCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccC---C
Q 001248 540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD---G 616 (1114)
Q Consensus 540 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~ 616 (1114)
+..+.++..+.+|.+.|++++|+| ..+.+.||++++||.+-. .+...... .
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP-------------------------~~sss~dgt~~~wd~r~~-~~~y~prp~~~~ 314 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSP-------------------------RASSSDDGTCRIWDARLE-PRIYVPRPLKFT 314 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCc-------------------------cccCCCCCceEecccccc-ccccCCCCCCcc
Confidence 999999999999999999999988 346788999999998711 11111000 0
Q ss_pred CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccc
Q 001248 617 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 696 (1114)
Q Consensus 617 ~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1114)
....+.++.|...+.-+++++.|+.-..|
T Consensus 315 ~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~--------------------------------------------------- 343 (1113)
T KOG0644|consen 315 EKDLVDSILFENNGDRFLTGSRDGEARNH--------------------------------------------------- 343 (1113)
T ss_pred cccceeeeeccccccccccccCCcccccc---------------------------------------------------
Confidence 00112222233333333333333332222
Q ss_pred cccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEE
Q 001248 697 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 776 (1114)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~ 776 (1114)
.... +++..++-.+++.
T Consensus 344 ---------------------------------e~~~-----------------------l~~~~~~lif~t~------- 360 (1113)
T KOG0644|consen 344 ---------------------------------EFEQ-----------------------LAWRSNLLIFVTR------- 360 (1113)
T ss_pred ---------------------------------hhhH-----------------------hhhhccceEEEec-------
Confidence 2110 0000000001110
Q ss_pred EEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC-CEEEEEe-CCeEEEEEcCCCccccc
Q 001248 777 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMAT 854 (1114)
Q Consensus 777 vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~-dg~i~iwd~~~~~~~~~ 854 (1114)
+.|- .+.+++- +-.+.+|++.+|...+.
T Consensus 361 --------------------------------------------------ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~ 390 (1113)
T KOG0644|consen 361 --------------------------------------------------SSDLSSIVVTARNDHRLCVWNLYTGQLLHN 390 (1113)
T ss_pred --------------------------------------------------cccccccceeeeeeeEeeeeecccchhhhh
Confidence 1011 2333333 67789999999999999
Q ss_pred cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee-cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 855 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 855 ~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+.+|...+..+.++|.+..+..+++.||...|||+-.|..++.. .+| ..+..-+||+||..++....-|.+.|.....
T Consensus 391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred hcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCC
Confidence 99999999999999988888889999999999999988766544 455 4566789999999999888889999987765
Q ss_pred Ccc
Q 001248 934 WEK 936 (1114)
Q Consensus 934 ~~~ 936 (1114)
++.
T Consensus 470 s~s 472 (1113)
T KOG0644|consen 470 SKS 472 (1113)
T ss_pred Ccc
Confidence 443
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=152.24 Aligned_cols=319 Identities=8% Similarity=0.069 Sum_probs=204.6
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCC---ceeeeeEee-ccccCCeeEEEecCCCCeeEEEEecCCCC
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG---DEVRQHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKT 490 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~---~~~~~~~~l-~~h~~~V~~v~~s~d~~~~~l~s~~~d~~ 490 (1114)
-+.+|.+.|+++.||.++++||+|+.|..+++|++..- +..+++... ..|...|.|++|...+. .+++|+.+++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCcce
Confidence 46789999999999999999999999999999998631 111111122 23567999999998777 7999999999
Q ss_pred EEEEeCCCCcceeEeec--cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeE
Q 001248 491 IKVWDATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 491 i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
|...|+++.+.+..+.. ..+.|..+..+|.. +.+++.+.++.|.+||.+...... .-++....
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~---------~~~~~AN~---- 193 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPI---------SLVLPANS---- 193 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCC---------ceeeecCC----
Confidence 99999999998887752 23589999887774 689999999999999998643211 11111111
Q ss_pred EeeecccceeEEEecCCC-CEEEEEeCCCeEEEEECCCcce-EEEecc----CCCCCCcCeEEEcCCCCEEEEEeCCCcE
Q 001248 569 YQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQL-LTSIDA----DGGLPASPRIRFNKDGCLLAVSTNDNGI 642 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~----~~~~~~v~~~~~s~d~~~l~~~~~dg~i 642 (1114)
...+..+.|+|.. .++++.++.+-+-+||.+.... +..... ......-.++.|+|+|+.+.+--...--
T Consensus 194 -----~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P 268 (609)
T KOG4227|consen 194 -----GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP 268 (609)
T ss_pred -----CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC
Confidence 1234445566654 3566778889999999875431 111111 1111123578899999988876655555
Q ss_pred EEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccC
Q 001248 643 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 722 (1114)
Q Consensus 643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1114)
.+||+.+....+..+. |...
T Consensus 269 ~~~D~~S~R~~V~k~D-~N~~----------------------------------------------------------- 288 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSD-HNPN----------------------------------------------------------- 288 (609)
T ss_pred EEeeeecccceeEecc-CCCC-----------------------------------------------------------
Confidence 5666655311111111 0000
Q ss_pred CCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccC----CCCCcccccccc
Q 001248 723 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN----SSGKATASVAPQ 798 (1114)
Q Consensus 723 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~ 798 (1114)
. ......+.+++|..|.. +++++.+=.|++|.+...... ..|.--...-..
T Consensus 289 ---------------G---------Y~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 289 ---------------G---------YCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred ---------------c---------ceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 0 01234566777776665 778888888888887643211 111100000000
Q ss_pred ccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEc
Q 001248 799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM 846 (1114)
Q Consensus 799 ~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~ 846 (1114)
+ ...+.+. .+. +|.+-+..+.|+|...+|++.+ .+.++||.-
T Consensus 344 ~--~i~~~~~--VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 344 I--FIEKELT--VLR--GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred h--eecceeE--EEe--cccccccceeecCCcceEeccchhhheecccc
Confidence 0 0011111 123 4999999999999998888877 899999974
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=4.9e-16 Score=149.88 Aligned_cols=228 Identities=17% Similarity=0.200 Sum_probs=175.2
Q ss_pred CCeEEEEEcCCCc--c-ccccCCCCCCeEEEEEecCCCcEEEEEeCCC-------cEEEEEccc---------ceEEEee
Q 001248 838 GGKISLFNMMTFK--T-MATFMPPPPAATFLAFHPQDNNIIAIGMDDS-------SIQIYNVRV---------DEVKSKL 898 (1114)
Q Consensus 838 dg~i~iwd~~~~~--~-~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg-------~v~iwd~~~---------~~~~~~l 898 (1114)
|+.|.+.++.... . ...|..|.++|..++-+|.+.++|+++..+. .+-||.+.. .+++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 5778888776432 2 2456778899999999998899999887532 467998753 2344555
Q ss_pred c-ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc--CCcEEEEEeCCeE
Q 001248 899 K-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVVHETQL 975 (1114)
Q Consensus 899 ~-~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp--dg~~l~~~~d~~i 975 (1114)
. .+-+.|.||.|.|++..|++-. |..|.+|+++.+............. ......++-+|+| ||+.+++..|+++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~--e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA--EMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccc--cccceecccccCCCCccceEEEeCCCcE
Confidence 4 4567899999999999999887 7889999999866532222211111 1123567788998 8999999999999
Q ss_pred EEEEcCCCceeeeeecCCCCcCeeEEEECCCCCE-EEEEEcCCeEEEEEcCCCe-eeEEeCCCcccCCCCCCCCccceEE
Q 001248 976 AIFETTKLECVKQWVPRESSAPITHATFSCDSQL-VYACFLDATVCVFSAANLK-LRCRINPSAYLPAGVSSSNVHPLVI 1053 (1114)
Q Consensus 976 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~s~Dg~I~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~ 1053 (1114)
..||+++..+...+. ++|...|..+.|.|+-++ |++++.||.|++||.+..+ .+..+. + ++++|+ ++
T Consensus 196 ~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-------~-HsHWvW--~V 264 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-------G-HSHWVW--AV 264 (370)
T ss_pred EEEEccchhhhcchh-hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-------C-CceEEE--EE
Confidence 999999998877766 588999999999999886 7899999999999997654 333332 2 277788 89
Q ss_pred EecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1054 AAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1054 ~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.|.|.-.++|++|+.|..|.+|....
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccc
Confidence 99998788999999999999998744
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=3.3e-15 Score=155.97 Aligned_cols=207 Identities=16% Similarity=0.203 Sum_probs=153.7
Q ss_pred EEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCc
Q 001248 374 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 453 (1114)
Q Consensus 374 l~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~ 453 (1114)
++..+.||.+.|-+-. ++... ....|.+.|.|-.|+|||.-|++++.||.|++|.-...
T Consensus 78 ~~i~s~DGkf~il~k~-~rVE~-------------------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM- 136 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKS-ARVER-------------------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM- 136 (737)
T ss_pred EEEEcCCceEEEeccc-chhhh-------------------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-
Confidence 5566778888877633 22211 36789999999999999999999999999999986542
Q ss_pred eeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCC
Q 001248 454 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 533 (1114)
Q Consensus 454 ~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~ 533 (1114)
++. ++-....+|+|++|.|++.. ++++.+ +.+.|=.+.....+-.++.|.+-|.++.|++.. +++++|+.|-
T Consensus 137 -LRS--tl~Q~~~~v~c~~W~p~S~~-vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s--~lI~sgGED~ 208 (737)
T KOG1524|consen 137 -LRS--TVVQNEESIRCARWAPNSNS-IVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS--NIIASGGEDF 208 (737)
T ss_pred -HHH--HHhhcCceeEEEEECCCCCc-eEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccc--cceeecCCce
Confidence 221 34456779999999999986 444443 467676777777777889999999999998766 5999999999
Q ss_pred eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q 001248 534 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 534 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 613 (1114)
..++||-. +..++.-..|..+|++++|.|+ + .++.++ -++++ +.
T Consensus 209 kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~---------------------~~~v~S-~nt~R------------~~ 252 (737)
T KOG1524|consen 209 RFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-K---------------------DYLLWS-YNTAR------------FS 252 (737)
T ss_pred eEEeeccc-CcccccCChhccceeeeeeccc-c---------------------ceeeee-eeeee------------ec
Confidence 99999975 3455566677778888888887 3 233333 23333 21
Q ss_pred cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEE
Q 001248 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1114)
Q Consensus 614 ~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd 646 (1114)
. ...+.|..++||+||..+++|+..|.+.+-.
T Consensus 253 ~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 253 S-PRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred C-CCccceEEEEEcCCCceeeccccCceEEEee
Confidence 1 1234688999999999999999988876543
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.70 E-value=4.3e-17 Score=178.44 Aligned_cols=268 Identities=19% Similarity=0.306 Sum_probs=187.6
Q ss_pred cceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE
Q 001248 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1114)
Q Consensus 349 ~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1114)
+.+.++++|...|.|+.|...|+| +++|+.|..|+||..+++.++. ...||.+.|+.++.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lA-------------------s~rGhs~ditdlav 240 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLA-------------------SCRGHSGDITDLAV 240 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhc-------------------cCCCCccccchhcc
Confidence 345677889999999999999997 9999999999999999998887 48999999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE---e
Q 001248 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---F 505 (1114)
Q Consensus 429 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~ 505 (1114)
+.+..++|+++.|..|++|.+.++..+. .+.||++.|++++|+|- .+.+.||++++||.+-.-.+.. +
T Consensus 241 s~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 241 SSNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred chhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCC
Confidence 9999999999999999999999998776 78999999999999984 4778999999999871111111 0
Q ss_pred ec-cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe---eeecCCC-----------CeeEEEEEe-cCCC--e
Q 001248 506 EG-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPG-----------RWCTTMAYS-ADGT--R 567 (1114)
Q Consensus 506 ~~-h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~-----------~~v~~~~~s-~~g~--~ 567 (1114)
+. ....+.++.| ..++.-+.+++.|+.-..|...-.... ..+.... ..+....|. .+|. .
T Consensus 312 ~~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H 389 (1113)
T KOG0644|consen 312 KFTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH 389 (1113)
T ss_pred Ccccccceeeeec--cccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhh
Confidence 00 1122222322 233445666666666555544321110 0000000 011111111 1110 1
Q ss_pred EEeeecccceeEEEecCCCCE-EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEE
Q 001248 568 TYQGFRKRSLGVVQFDTTKNR-FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd 646 (1114)
...+| ...+.++.++|.... ..+++.||...|||+..|.+++.+... + ..+....||+||..++....-|.+.|..
T Consensus 390 ~l~gh-sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 390 NLMGH-SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred hhccc-ccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCCCceEEec
Confidence 12222 235666777776544 456889999999999999888777532 2 3577889999999999988889999987
Q ss_pred ccCC
Q 001248 647 TSDG 650 (1114)
Q Consensus 647 ~~~~ 650 (1114)
...+
T Consensus 467 ~gqs 470 (1113)
T KOG0644|consen 467 TGQS 470 (1113)
T ss_pred cCCC
Confidence 6554
No 196
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=1.9e-14 Score=144.45 Aligned_cols=260 Identities=13% Similarity=0.140 Sum_probs=167.7
Q ss_pred CCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCC---CCCCeEEEEEecCCCcEEEEEe--CCCcEEEEEccc
Q 001248 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRV 891 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~la~g~--~dg~v~iwd~~~ 891 (1114)
....|.++.+ +-++|++.-.+.|+|||+++.+.+.++.. +...+.++++++ ++.+||.-+ ..|.|.+||+.+
T Consensus 86 fpt~IL~Vrm--Nr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 86 FPTSILAVRM--NRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred cCCceEEEEE--ccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc
Confidence 4566777776 45577777777799999999999888754 344566666666 667888643 568999999999
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 969 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~- 969 (1114)
-+.+..+..|.+++.+++|+++|.+||++|+-|+ |||+.+.++++. .....|-. ...|.+++|+||+.+|++
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl----~eFRRG~~--~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKL----YEFRRGTY--PVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEe----eeeeCCce--eeEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999998 689999887652 33333433 257899999999999999
Q ss_pred EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCc
Q 001248 970 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1048 (1114)
Q Consensus 970 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1048 (1114)
+..++|.+|.+.+...-..-. .....-..-.++ +. +++- -.+.-.+||....-.-.++. .. ..-
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~--p~~~~~~~~~~s---k~-~~sylps~V~~~~~~~R~FAt~~l~------~s---~~~ 301 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPES--PTAGTSWFGKVS---KA-ATSYLPSQVSSVLDQSRKFATAKLP------ES---GRK 301 (391)
T ss_pred cCCCeEEEEEecccccCCCCC--CCCCCcccchhh---hh-hhhhcchhhhhhhhhccceeEEEcc------CC---Ccc
Confidence 678899999987654211100 000000000011 00 0010 01122235543322222222 11 101
Q ss_pred cceEEEecC-CCCCeEEEEeCCCcEEEEeccCCC--CcccCCCCCCCCCCCCCCCCC
Q 001248 1049 HPLVIAAHP-QEPNEFALGLSDGGVHVFEPLESE--GKWGVPPPVDNGSTSSMPATP 1102 (1114)
Q Consensus 1049 ~~~~~~~~~-~d~~~l~s~~~Dg~v~vW~i~~~~--~~~~~~~~~~~~~~~~~~~~~ 1102 (1114)
. .+++.+ +...++.+++.||.++.+.++-.+ +.+-+.+-+-.+++....+++
T Consensus 302 ~--~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~~t~~a~~ 356 (391)
T KOG2110|consen 302 N--ICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSIDTSAASG 356 (391)
T ss_pred c--eEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCccccccccc
Confidence 1 223332 256789999999999999997643 444444444555555544443
No 197
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.6e-16 Score=166.13 Aligned_cols=250 Identities=15% Similarity=0.203 Sum_probs=184.3
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcC--------CCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--------TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~--------~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
|...|+.++|.+-...|++++ ||+|++|+++ ..+++.+|.+|.++|.|+++.+ ++..+.+|+.||+|+.|
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCW 371 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeee
Confidence 888899999999999999999 9999999993 2345778999999999999999 99999999999999999
Q ss_pred Ecccc----------eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceE
Q 001248 888 NVRVD----------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957 (1114)
Q Consensus 888 d~~~~----------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 957 (1114)
++... .+...+.||.+.|+.+++|+....|++++.||++++|+...... ........+ +....
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~---~~f~~~~e~----g~Pls 444 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP---CTFGEPKEH----GYPLS 444 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc---cccCCcccc----CCcce
Confidence 65421 24467889999999999999999999999999999999877443 111111111 12345
Q ss_pred EEEccCC-cEEEE-EeCCeEEEEEcCCCceeeeeecCCC-----CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeee
Q 001248 958 VQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRES-----SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 958 v~fspdg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h-----~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
+.|.... ...++ ..-+.--+++......+..+....- ...+..+.+.|.+.+.+++-.|+.|+++|..+++++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 5544332 11111 2223333444444444444332111 234677888899999999999999999999999998
Q ss_pred EEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCccc
Q 001248 1031 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1085 (1114)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~ 1085 (1114)
.... .+.+...++++.| +|-+|++|+.||.+++|++......++
T Consensus 525 ~s~~----------a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 525 HSMV----------AHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred hhee----------eccceecceeecC-CCceEEeecCCceeehhhccchheeec
Confidence 7554 1123344888988 688999999999999999977664443
No 198
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5e-15 Score=166.73 Aligned_cols=195 Identities=18% Similarity=0.211 Sum_probs=144.8
Q ss_pred CCEEEEEeCCeEEEEEcCCCccccccCC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---eEEEeecccccC-
Q 001248 830 DSYVMSASGGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKR- 904 (1114)
Q Consensus 830 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~---~~~~~l~~h~~~- 904 (1114)
|.++++|.-..|+|||+........+.. ....|+++.-+...|+++|+|..||.|++||.... ..+...+.|++.
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence 4444444457899999987766666543 34457777766556899999999999999998753 456778889888
Q ss_pred -eeEEEEcCCCCE-EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001248 905 -ITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 982 (1114)
Q Consensus 905 -V~~l~~s~d~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~ 982 (1114)
|..+.+-+.|-- |+||+.||.|++||+....... ...... +..-.+..+++..+++...+|+|+.+.|+||++..
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~--~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET--FLTIVA-HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG 1334 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCcccc--cceeee-ccccCccceeeeeccCCCeeeecCcceEEEEecCh
Confidence 999999887654 9999999999999998742222 222211 11111247999999999999998779999999874
Q ss_pred CceeeeeecC-----CCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 983 LECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 983 ~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
+.+..+... ...+.+.|++|.|-.-+||+|+.|.+|.||.....+
T Consensus 1335 -~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 -EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 333333211 124578999999999999999999999999877654
No 199
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.2e-16 Score=160.57 Aligned_cols=322 Identities=16% Similarity=0.206 Sum_probs=231.4
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEEEEeeccCCCceEEEEEecCCeEEEE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 538 (1114)
.|.+|.+.|+.|.|...|. .+++|+.|..|.+||+..++....+ .||...|....|.|..+...+++++.||.+++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 5889999999999999999 8999999999999999999887666 579988888888888777899999999999988
Q ss_pred EcCCCCCee---eecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccC
Q 001248 539 LYDNLGSRV---DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 615 (1114)
Q Consensus 539 d~~~~~~~~---~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 615 (1114)
.+...+... .+..|.+.|..++.-|+.. .-|+++++|+.+.-+|++.+.....+...
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--------------------~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP--------------------KPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCC--------------------CcccccccccceeeeeeccCCccceeeee
Confidence 766544332 4455666777777777655 34889999999999999887655544322
Q ss_pred CC-C---CCcCeEEEcCCC-CEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccc
Q 001248 616 GG-L---PASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 690 (1114)
Q Consensus 616 ~~-~---~~v~~~~~s~d~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1114)
.. . .....++..|.. ..+++++.|..+++||.+.-.+.- ..+ .+. .|.+..
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~--~n~---~~~--------~f~p~h----------- 330 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE--NNG---VLD--------KFCPHH----------- 330 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcc--ccc---hhh--------hcCCcc-----------
Confidence 11 1 245688888844 589999999999999876431110 000 000 011000
Q ss_pred cccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecc
Q 001248 691 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA 770 (1114)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~ 770 (1114)
++ ......|++++|+.++.-++++.
T Consensus 331 --------------------------l~-----------------------------~d~~v~ITgl~Ysh~~sElLaSY 355 (559)
T KOG1334|consen 331 --------------------------LV-----------------------------EDDPVNITGLVYSHDGSELLASY 355 (559)
T ss_pred --------------------------cc-----------------------------ccCcccceeEEecCCccceeeee
Confidence 00 01345789999999988899999
Q ss_pred cCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEE-eeCCCEEEEEeC-CeEEEEEcCC
Q 001248 771 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASG-GKISLFNMMT 848 (1114)
Q Consensus 771 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~-s~d~~~l~~~~d-g~i~iwd~~~ 848 (1114)
.|-.|+++.-..+.- .......++ .......+++......|..+-| -|...|+++|+| |.|.||+-.+
T Consensus 356 nDe~IYLF~~~~~~G----~~p~~~s~~------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDG----SEPDPSSPR------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred cccceEEeccccccC----CCCCCCcch------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 998999885332211 000000000 1122222444334455777765 578899999996 9999999999
Q ss_pred CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce
Q 001248 849 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 893 (1114)
Q Consensus 849 ~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~ 893 (1114)
++.++.+.+...-|.|+.-+| ---+||+.+-|.-|+||...+.+
T Consensus 426 ~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 426 GEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred hHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence 999999988777899999998 66799999999999999875443
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=3.9e-15 Score=166.95 Aligned_cols=260 Identities=20% Similarity=0.264 Sum_probs=190.1
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
..+.-...|+|++|+|....++|.|..+|.|.+||+..+..... .........|..+|+.+.|-.+-
T Consensus 237 ~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 237 LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccCCcCeEEEEEeccC
Confidence 56667899999999999988999999999999999988765210 00111356899999999998754
Q ss_pred Ce--EEEEeCCCeEEEEEccCCceeeeeEeec---------cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC---C
Q 001248 433 SL--FGVAYSRHIVQIYSYHGGDEVRQHLEID---------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---N 498 (1114)
Q Consensus 433 ~~--las~~~dg~i~iwd~~~~~~~~~~~~l~---------~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~---~ 498 (1114)
.- +++++.||.|..|+++.-........+. .-...+++++|.+.... .++.|+.+|.|..-+-. .
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCcc
Confidence 44 9999999999999876432211110111 12236899999998777 68999999998773322 2
Q ss_pred Cc-----ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcC-CCCCeeeecCCCCeeEEEEEecCCCeEEeee
Q 001248 499 GA-----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 499 ~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
+. .+..+..|.++|.++.+++-.. ..+.+++ |.++++|.-. ...++..+..+...+.+++|||-..
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp------ 454 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP------ 454 (555)
T ss_pred cccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc------
Confidence 22 1335567889999999876554 3444554 9999999887 5566666776777788888888654
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc--eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
..|+++..+|.|.+||+.... ++.+.... ....+.+.|++.|+.|++|...|.+.+|++...
T Consensus 455 --------------avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 455 --------------AVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred --------------eEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 247888899999999986543 33333333 345678889999999999999999999998644
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.2e-14 Score=136.85 Aligned_cols=254 Identities=15% Similarity=0.201 Sum_probs=172.2
Q ss_pred CceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe
Q 001248 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 439 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 439 (1114)
.|.+-++||.+++ |++|..+|+|.+..+.+-..-.. ............+|.++|..++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 3556689999996 99999999999999865221110 001111111357999999999998 55777775
Q ss_pred CCCeEEEEEccCCce-e--eeeEe--ecccc-----CCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc
Q 001248 440 SRHIVQIYSYHGGDE-V--RQHLE--IDAHV-----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1114)
Q Consensus 440 ~dg~i~iwd~~~~~~-~--~~~~~--l~~h~-----~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 509 (1114)
||.|+=|.+..... . +...+ ..-|. ..|++|-..|..+. ++.++.|+.++-||+++|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS--i~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS--ILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc--EEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998764322 0 00000 11122 35899999988773 5666689999999999999999999999
Q ss_pred cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
+.|.++.--. ....+++|+.||++++||.++.+....+..-... ..+..+-..-+.++ .-+..++
T Consensus 157 DYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~-----------~~lRp~~g~wigal--a~~edWl 221 (325)
T KOG0649|consen 157 DYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP-----------NLLRPDWGKWIGAL--AVNEDWL 221 (325)
T ss_pred ceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccCh-----------hhcCcccCceeEEE--eccCceE
Confidence 9999998422 2257999999999999999998776654322110 00111111122222 2333467
Q ss_pred EEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
++|+ ...+.+|+++..++...+....+ +..+.|. .+.+++++..+.+.-|.+..
T Consensus 222 vCGg-Gp~lslwhLrsse~t~vfpipa~---v~~v~F~--~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 222 VCGG-GPKLSLWHLRSSESTCVFPIPAR---VHLVDFV--DDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred EecC-CCceeEEeccCCCceEEEecccc---eeEeeee--cceEEEeccccceeeeeecc
Confidence 6655 46789999999999888877654 6667775 45677788777888887643
No 202
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.5e-15 Score=157.17 Aligned_cols=306 Identities=11% Similarity=0.152 Sum_probs=223.1
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC--CCC
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS 433 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~ 433 (1114)
+|.+-|..|.|...|. +|++|+.|..|.+||+..++.... ...||...|..-.|-| +.+
T Consensus 140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCCc
Confidence 4999999999999999 599999999999999998876653 4678988888888888 567
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe---ecccc
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHEA 510 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~h~~ 510 (1114)
.+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|+..+.....+ ..+..
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCc
Confidence 8999999999999887655445444567889999999999999887 7999999999999999887654433 22333
Q ss_pred ---CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 511 ---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 511 ---~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
...+++..|... ..+++++.|..+++||.+.......-. .+. .|.|. .+.....-.|+++.++.++.
T Consensus 280 ~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~----~~~--~f~p~---hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNG----VLD--KFCPH---HLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred cceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccc----hhh--hcCCc---cccccCcccceeEEecCCcc
Confidence 356667666543 589999999999999987533221000 000 11111 11112223566777776666
Q ss_pred EEEEEeCCCeEEEEECCC--c----------ceEEE-eccCCCCCCcCeEEE-cCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 588 RFLAAGDDFSIKFWDMDS--V----------QLLTS-IDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~--~----------~~~~~-~~~~~~~~~v~~~~~-s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
.+++...|-.|++++..- | ..+.. +++|.....|..+-| .|...++++|+.-|.|.||+-.++ +.
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-ei 428 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EI 428 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HH
Confidence 788888888999996432 2 22233 667766667777775 568899999999999999998888 67
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
++.+++....+.+ ....|--..|++.+.|..|+||....
T Consensus 429 i~~MegDr~VVNC-----------------------------------------LEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 429 IRFMEGDRHVVNC-----------------------------------------LEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred HHHhhcccceEec-----------------------------------------cCCCCCCchhhccCCccceeeecCCc
Confidence 7777665443221 11224456789999999999998643
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=2.7e-14 Score=160.23 Aligned_cols=285 Identities=15% Similarity=0.157 Sum_probs=191.8
Q ss_pred CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc--eeE----eeccccCEEEE
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYI----FEGHEAPVYSV 515 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--~~~----~~~h~~~v~~~ 515 (1114)
+.+.||+++...... ..+ .-...|.++.|+|.... +++.|..+|.|.+||++.+.. ... ...|..++..+
T Consensus 222 ~~~~vW~~~~p~~Pe--~~~-~~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPE--LVL-ESPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCCCCce--EEE-ecCCceeEEEeccCCcc-eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 479999998763222 123 34568999999999887 789999999999999987765 222 23588889988
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
.|..+..+.-+++++.||.|..|+++......... .....
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~---------------------------------------~~~~~- 337 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL---------------------------------------LLESK- 337 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhc---------------------------------------ccccc-
Confidence 88776655568888888888888765422211000 00000
Q ss_pred CeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCC
Q 001248 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1114)
...+ ... .....+++++|.+ +-..+++|+++|.|.--.-........
T Consensus 338 -------~~~~---~~~---~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~------------------- 385 (555)
T KOG1587|consen 338 -------KHKG---QQS---SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE------------------- 385 (555)
T ss_pred -------cccc---ccc---ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-------------------
Confidence 0000 000 1123467888887 567788899999876532211100000
Q ss_pred ccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccce
Q 001248 675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1114)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1114)
T Consensus 386 -------------------------------------------------------------------------------- 385 (555)
T KOG1587|consen 386 -------------------------------------------------------------------------------- 385 (555)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE-E
Q 001248 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY-V 833 (1114)
Q Consensus 755 ~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~-l 833 (1114)
+.|.+... . ..|.++|+++.++|=+.. +
T Consensus 386 --~~~~~~~~-----------------------------------------------~--~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 386 --VSYKGHST-----------------------------------------------F--ITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred --cccccccc-----------------------------------------------c--cccCcceEeeecCCCcccee
Confidence 00000000 0 016666777777775543 4
Q ss_pred EEEeCCeEEEEEcC-CCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc--eEEEeecccccCeeEEEE
Q 001248 834 MSASGGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAF 910 (1114)
Q Consensus 834 ~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~ 910 (1114)
.+++|-+++||... ...++..+..+...+++++|||.....+|++..||.|.+||+... ..+.+..-+....+.+.|
T Consensus 415 ls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~ 494 (555)
T KOG1587|consen 415 LSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW 494 (555)
T ss_pred eeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec
Confidence 44448889999887 666667777777889999999977889999999999999999753 344455445667788899
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCC
Q 001248 911 SHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 911 s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+++|+.|+.|+..|++.+|++..
T Consensus 495 s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 495 SPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCCcEEEEecCCCcEEEEEcCc
Confidence 99999999999999999999964
No 204
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=9.9e-17 Score=176.20 Aligned_cols=301 Identities=19% Similarity=0.225 Sum_probs=207.2
Q ss_pred hhHHHHHHHHhHHHHHhhccCCCCCCCCcCcccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001248 168 NSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVP 247 (1114)
Q Consensus 168 ~~rL~~ll~qa~~~Q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1114)
+-.|..|+.|++++|+.+|++|.++++.+|||..|+|+.+ .+
T Consensus 1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEp-------------------------------k~------- 1053 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEP-------------------------------KR------- 1053 (1516)
T ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCCh-------------------------------HH-------
Confidence 4479999999999999999999999999999999999981 00
Q ss_pred CcccccccCCCCCcCCCcccCccCCCCCCCccccccCCCCCCCCCcccCCCCChhhhhcccCCCCCccccccCccccccc
Q 001248 248 TPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVS 327 (1114)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~ 327 (1114)
....|-|...+.-+....+....++....+.+++-.|++. |
T Consensus 1054 -----------------------~~~ap~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~-------------w--- 1094 (1516)
T KOG1832|consen 1054 -----------------------LLEAPLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRS-------------W--- 1094 (1516)
T ss_pred -----------------------HhhcchhhhhcccchhhcCcccccccCcccchhhHhhccc-------------c---
Confidence 0111122223333333444455667777777777666652 1
Q ss_pred ccCCCCcCCCCcCCCCCCCCCcceeEec-cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCC
Q 001248 328 FTGHSHSHSHSQAFSTPEDLPKTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGA 406 (1114)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~ 406 (1114)
+.+ .|+..-+|++||-+.++ |+.|+..|.|+++++.+|....
T Consensus 1095 -------------------------~~frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~----------- 1137 (1516)
T KOG1832|consen 1095 -------------------------RSFRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEE----------- 1137 (1516)
T ss_pred -------------------------hhhhccccceeeEEeecCCce-EEeeeccceEEEEEccCccccc-----------
Confidence 223 37788999999999996 9999999999999999997765
Q ss_pred CCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCC--eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEE
Q 001248 407 CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT 484 (1114)
Q Consensus 407 ~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s 484 (1114)
....|..+|+.+.=|.||..+++.+... ...+|+...- .....++. .-.++.|+..... -+.
T Consensus 1138 --------s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~ 1201 (1516)
T KOG1832|consen 1138 --------SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RAL 1201 (1516)
T ss_pred --------cccccccccccccccCCcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHh
Confidence 3678999999999999999988775543 4679998752 22222343 3458899877553 233
Q ss_pred ecCCCCEEEEeCCCCcceeEe-ec---cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEE
Q 001248 485 CGDDKTIKVWDATNGAKQYIF-EG---HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 560 (1114)
Q Consensus 485 ~~~d~~i~iwd~~~~~~~~~~-~~---h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 560 (1114)
|..-..+.+||++++..+.++ .+ ....-+...|+| +..+++- || .+||++..+.+..+..-..
T Consensus 1202 gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP--~D~LIln---dG--vLWDvR~~~aIh~FD~ft~------ 1268 (1516)
T KOG1832|consen 1202 GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP--CDTLILN---DG--VLWDVRIPEAIHRFDQFTD------ 1268 (1516)
T ss_pred cccccceEEEecccCcHHHHhcCcchhhhhhccccccCC--CcceEee---Cc--eeeeeccHHHHhhhhhhee------
Confidence 333456889999999887763 22 111224444544 4345553 33 6899988766554432211
Q ss_pred EecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEE
Q 001248 561 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 636 (1114)
Q Consensus 561 ~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 636 (1114)
.-. -.|+|.|+.++.-++ |||+++.+.+.....-.. ..+.|+..|..++..
T Consensus 1269 -~~~---------------G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1269 -YGG---------------GGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred -ccc---------------ccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eEEEeccCccchhhh
Confidence 001 137778888888776 999999998887765433 578898888876643
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.9e-15 Score=154.83 Aligned_cols=198 Identities=16% Similarity=0.170 Sum_probs=159.5
Q ss_pred cEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc
Q 001248 822 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 900 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~ 900 (1114)
.+++|+.+|..+++++ ||++|||+..+...+.....|..+|.++.|+| ||++||+-+.| ..+||++.+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999888888888888999999999999 99999999999 999999999976666543
Q ss_pred --cccCeeEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCcccccccc-ccCCCCCCCCCCceEEEEccCCcEEEE-Ee
Q 001248 901 --HSKRITGLAFSHAL-----NVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQFHQDQIHFLV-VH 971 (1114)
Q Consensus 901 --h~~~V~~l~~s~d~-----~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~fspdg~~l~~-~~ 971 (1114)
-......+-|+.|+ ...++...-+.|+.|++..+........ +....+ ..|++++.|+||+++|. +.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence 22335667788877 3444555567788888766443211111 111111 36899999999999999 58
Q ss_pred CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 972 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 972 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
||.|.|++..+.+++.... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999998887654 68999999999999999999999999998887654
No 206
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=1.9e-14 Score=139.27 Aligned_cols=246 Identities=15% Similarity=0.203 Sum_probs=177.8
Q ss_pred CCCCCccEEEEeeCCC----EEEEEeCCeEEEEEcCC--Ccc--cccc-----CCCCCCeEEEEEecCCCcEEEEEeCCC
Q 001248 816 NPEEAVPCFALSKNDS----YVMSASGGKISLFNMMT--FKT--MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDS 882 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~----~l~~~~dg~i~iwd~~~--~~~--~~~~-----~~~~~~i~~l~~sp~d~~~la~g~~dg 882 (1114)
.|..+++.+-|.|+.+ -++..++..+|+|.+.. .+. ...+ ..+..++++..|+..+.++|.+.+-|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 3889999999999874 23344467899999873 211 1112 234568999999988899999999999
Q ss_pred cEEEEEcccce---EEEeecccccCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEE
Q 001248 883 SIQIYNVRVDE---VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV 958 (1114)
Q Consensus 883 ~v~iwd~~~~~---~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v 958 (1114)
+..|||++++. ....+-+|..+|..|+|..++ +.+||+|.||.|++||+...+.... +-..... ..+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI--IYE~p~~---~~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI--IYEDPSP---STPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE--EecCCCC---CCcceee
Confidence 99999999863 466788999999999999865 5789999999999999998554322 2111111 2367888
Q ss_pred EEcc-CCcEEEE-Ee-CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCC-CEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 959 QFHQ-DQIHFLV-VH-ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 959 ~fsp-dg~~l~~-~~-d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+|++ |-+++|+ +. ...|.|.|++.-.. ....+.+|.+.|..++|.|.. ..|++++.|..+.+||+.+.-.-....
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~t-pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCT-PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED 327 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCc-ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence 8887 5677888 54 45799999875432 233445999999999999965 469999999999999997643311111
Q ss_pred C-CcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEE
Q 001248 1035 P-SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1074 (1114)
Q Consensus 1035 ~-~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~v 1074 (1114)
+ ..|.. .++|+ .+.|++..++.++.+. ++++.+
T Consensus 328 Pilay~a----~~EVN--qi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 328 PILAYTA----GGEVN--QIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred chhhhhc----cceee--eeeecccCCCEEEEEe-cCeeeE
Confidence 1 12221 33466 8999988888988876 444444
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.2e-15 Score=153.11 Aligned_cols=199 Identities=17% Similarity=0.169 Sum_probs=151.1
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccc
Q 001248 863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL 942 (1114)
Q Consensus 863 ~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 942 (1114)
.+++|++ +|..|++|+.||++|||+..+...+.....|...|.++.|||||++|++.+.| ..+||+++++-. +
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-----~ 220 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-----L 220 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-----h
Confidence 7899999 89999999999999999988888788888899999999999999999999999 799999999732 2
Q ss_pred ccCCCCCCCCCCceEEEEccCC---cE-EEE--EeCCeEEEEEcCCCce---eeeeecCCCCcCeeEEEECCCCCEEEEE
Q 001248 943 QIPTGRTPTAQSDTRVQFHQDQ---IH-FLV--VHETQLAIFETTKLEC---VKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 943 ~~~~~~~~~~~~i~~v~fspdg---~~-l~~--~~d~~i~iwd~~~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1114)
..... ....-....+.|+.|+ .+ +++ ..-+.|+.||+..... .+....-.-...|++++.|+||+++|.|
T Consensus 221 a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 221 ARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 21111 0011245678898887 33 333 2445677766543322 1111111124589999999999999999
Q ss_pred EcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1014 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1014 s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
+.||.|.|++..+.+.+.-++ ..|. ..++.+.|+| |.+++++.+.|....|..+.-
T Consensus 300 T~dGsVai~~~~~lq~~~~vk------~aH~---~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVK------EAHL---GFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeeh------hhhe---eeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 999999999999888876554 2221 3445999999 689999999999999999866
No 208
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.64 E-value=2.5e-14 Score=138.43 Aligned_cols=252 Identities=16% Similarity=0.258 Sum_probs=183.4
Q ss_pred ccCCCCceEEEEcCCCC----eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 355 LNQGSSPMSMDFHPVQQ----TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~----~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
+.|.-+++.+.|.||.+ .||||. +..+++|.+...+.... +...+....-..+..++++..|+.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~----------~~~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVE----------LQSVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCcee----------hhhhhccCcccccCCccccccccc
Confidence 57999999999999873 367764 46899999874322111 011111222345678999999998
Q ss_pred -CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe---e
Q 001248 431 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---E 506 (1114)
Q Consensus 431 -dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~ 506 (1114)
|-++|.+++-|-+..|||++++..-.....|-+|...|..|+|+..+.. +|++.|.||+|+++|++..+--..+ .
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence 8889999999999999999997432222357789999999999998877 8999999999999999865433222 2
Q ss_pred ccccCEEEEeeccCCCceEEEEEecC-CeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecC
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~ 584 (1114)
....+..-++|+. .|-+++++-..| ..|.+-|++... ....+..|...|..++|.|...
T Consensus 240 ~~~~pLlRLswnk-qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~------------------ 300 (364)
T KOG0290|consen 240 SPSTPLLRLSWNK-QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS------------------ 300 (364)
T ss_pred CCCCcceeeccCc-CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC------------------
Confidence 2245667788864 344788887775 468999998764 4557888999999999988765
Q ss_pred CCCEEEEEeCCCeEEEEECCCcce------EEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEE
Q 001248 585 TKNRFLAAGDDFSIKFWDMDSVQL------LTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI 644 (1114)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~i 644 (1114)
..+++++.|..+.+||+..--. +..+. ...+|+.+.|++ .+..++.+.. +++.+
T Consensus 301 --~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 301 --SHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred --ceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 4699999999999999875321 22222 234689999997 5677777654 34443
No 209
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.62 E-value=4.4e-12 Score=144.51 Aligned_cols=151 Identities=17% Similarity=0.300 Sum_probs=124.6
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 001248 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1114)
Q Consensus 364 v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~ 443 (1114)
+.++++.-| +++|+.-+.|.+|++...+.-. .+.||.+.|.++.||-||+++++.++|.+
T Consensus 139 ~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRs 198 (967)
T KOG0974|consen 139 IGDSAEELY-IASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRS 198 (967)
T ss_pred EeccCcEEE-EEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecCcc
Confidence 345666665 8999999999999987322211 37899999999999999999999999999
Q ss_pred EEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc-cCEEEEeeccCCC
Q 001248 444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKEN 522 (1114)
Q Consensus 444 i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~ 522 (1114)
+++|++++.+.... +.-+|...|+.+.|.|+ .++|++.|.+.++|+ ..++.+..+.+|. ..|..++... +
T Consensus 199 iRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~~--~ 269 (967)
T KOG0974|consen 199 IRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RIITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVPI--G 269 (967)
T ss_pred eeeeecccccccCc--ccccccceeEEEEeccc----eeEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEcC--C
Confidence 99999999886652 46689999999999998 389999999999997 4566666888876 4578877644 3
Q ss_pred ceEEEEEecCCeEEEEEcCCC
Q 001248 523 IQFIFSTALDGKIKAWLYDNL 543 (1114)
Q Consensus 523 ~~~l~s~~~d~~i~~wd~~~~ 543 (1114)
...+++++.|+.+++||+...
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ceEEEeeccCcchhhhhhhcc
Confidence 378999999999999998754
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=2.1e-13 Score=156.56 Aligned_cols=212 Identities=12% Similarity=0.133 Sum_probs=150.0
Q ss_pred cccCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEccC----CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC
Q 001248 415 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHG----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spd-g~~las~~~dg~i~iwd~~~----~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 489 (1114)
.+..|...|..++.+++ +.++++|+.||+|++||... +...+...++......+.++.+.+.+. .+|.++.||
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence 47789999999998875 49999999999999999863 123344445555577899999999999 688889999
Q ss_pred CEEEEeCCCC--cc-----eeEeecc-ccCEEEE-eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec--CCCCeeEE
Q 001248 490 TIKVWDATNG--AK-----QYIFEGH-EAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTT 558 (1114)
Q Consensus 490 ~i~iwd~~~~--~~-----~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~ 558 (1114)
.|++.++... +. .+....+ .+.+.++ ++........++.+..-+.|..||++.......+. ...+.|+
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT- 1199 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT- 1199 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee-
Confidence 9999998752 11 1112222 2334444 33332222378888889999999998765444332 2233444
Q ss_pred EEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCC---CCEEEE
Q 001248 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD---GCLLAV 635 (1114)
Q Consensus 559 ~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d---~~~l~~ 635 (1114)
.++.+|.++++++|+..|.+.+||++-+.++.......+ .++..+..+|- ....++
T Consensus 1200 --------------------Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs 1258 (1431)
T KOG1240|consen 1200 --------------------SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVS 1258 (1431)
T ss_pred --------------------EEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEE
Confidence 455555556899999999999999999998888875544 56777777763 244444
Q ss_pred E-e-CCCcEEEEEccCC
Q 001248 636 S-T-NDNGIKILATSDG 650 (1114)
Q Consensus 636 ~-~-~dg~i~iwd~~~~ 650 (1114)
+ + ..+.|.+|++.+|
T Consensus 1259 ~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1259 AGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred ecccCCCceeeeecccC
Confidence 4 3 4788999999988
No 211
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.3e-14 Score=152.08 Aligned_cols=239 Identities=11% Similarity=0.152 Sum_probs=173.7
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC--C
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 431 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 431 (1114)
+.+|.+-|+|++|+.||. +|++|+.|-.+.|||+...+.++. +-+||.+.|.++.|-| +
T Consensus 46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred hccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCC
Confidence 445999999999999999 699999999999999998777764 4689999999999999 6
Q ss_pred CCeEEEEeCCCeEEEEEccCCc-------eeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc---
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--- 501 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~-------~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~--- 501 (1114)
.+.+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.. .+.+++.||+|+-+|++....
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCc
Confidence 7889999999999999998522 12233346679999999999999966 799999999999999986321
Q ss_pred ----e---eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec-----CCCCeeEEE-EEecCCCeE
Q 001248 502 ----Q---YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-----APGRWCTTM-AYSADGTRT 568 (1114)
Q Consensus 502 ----~---~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~v~~~-~~s~~g~~~ 568 (1114)
. ..+...--...++.+++... .+|+.|+.|-..++||.+...+...-. .+.....++ -|+|.+-..
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 1 11112223456777777654 799999999999999964322221100 011112233 345544323
Q ss_pred Eeeecccc---eeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q 001248 569 YQGFRKRS---LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 569 ~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 613 (1114)
..+..... ...+.|+|+|..|+..-....|+++|+..++....+.
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 33322222 4557899999888887777889999998887665543
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3.4e-13 Score=154.08 Aligned_cols=226 Identities=14% Similarity=0.135 Sum_probs=149.2
Q ss_pred CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEccCCceee
Q 001248 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVR 456 (1114)
Q Consensus 380 dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~ 456 (1114)
+..|++||....... .+..|...|.+.+|||||++|+.++.+ ..|++||+.+++..
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~- 241 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK- 241 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-
Confidence 468999998755432 256778889999999999999988653 46999999887643
Q ss_pred eeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE--eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEe-cCC
Q 001248 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDG 533 (1114)
Q Consensus 457 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~ 533 (1114)
....+.+| ...++|+|||+. ++++.+.++.+.|| |+.++. +..+..+...+...+|++ ||+.|+..+ .++
T Consensus 242 ~l~~~~g~---~~~~~wSPDG~~-La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 242 VVASFRGH---NGAPAFSPDGSR-LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred EEecCCCc---cCceeECCCCCE-EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 22234444 346899999995 23344567765555 665554 456666777777888765 556665544 578
Q ss_pred eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q 001248 534 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 534 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 613 (1114)
...+|+++..........+.. ....|+|+|++++.++.++ +.+||+.+++......
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~-----------------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~ 370 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG-----------------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS 370 (429)
T ss_pred CceEEEEECCCCCeEEecCCC-----------------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC
Confidence 889998764322211111110 1234666666787777655 5569998887653332
Q ss_pred cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc--CCccceeecccccc
Q 001248 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAY 662 (1114)
Q Consensus 614 ~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~ 662 (1114)
.. ....+.|+|||++|+.++.++.+.+|.+. ++ ...+.+..+..
T Consensus 371 ~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~g 416 (429)
T PRK01742 371 TF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSDG 416 (429)
T ss_pred CC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCCC
Confidence 21 23568899999999999999999888764 34 45555655443
No 213
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=9.1e-14 Score=136.83 Aligned_cols=252 Identities=14% Similarity=0.145 Sum_probs=176.7
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
-..+|+|.+|++|+.. +|++.....|.||.......-. ..+++..|...|++|+|+|....|+
T Consensus 9 ~~~pitchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCce-EEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 3578999999999995 8999999999999988765221 1236889999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce----eEeeccccCE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPV 512 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~h~~~v 512 (1114)
+++.|..-+||....+...++...+..|+..+++|.|+|.+. .|++||.-..|.||-++...-- +.-+.+.+.|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999966666777778889999999999999999 7999999999999887654321 1223467889
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee-ecccceeEEEecCCCCEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG-FRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~-~~~~~v~~~~~~~~~~~l~~ 591 (1114)
.++.|++.+ -+|++|+.|+..+++..--.... ........-..+ |-|.....- ...+-+..+.|+|.|+.|+-
T Consensus 150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vd-ekpap~pWgsk~---PFG~lm~E~~~~ggwvh~v~fs~sG~~law 223 (361)
T KOG1523|consen 150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVD-EKPAPTPWGSKM---PFGQLMSEASSSGGWVHGVLFSPSGNRLAW 223 (361)
T ss_pred eeeeccCCc--ceecccccCcceeEEEEeeeccc-cCCCCCCCccCC---cHHHHHHhhccCCCceeeeEeCCCCCEeeE
Confidence 999998755 68999999999999854211000 000000000000 000000000 23345666788888889999
Q ss_pred EeCCCeEEEEECCCcc-eEEEeccCCCCCCcCeEEEcCCCCEEEE
Q 001248 592 AGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAV 635 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 635 (1114)
.+.|..+.+-|..... .+....... -+..++.|-.+...+++
T Consensus 224 v~Hds~v~~~da~~p~~~v~~~~~~~--lP~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 224 VGHDSTVSFVDAAGPSERVQSVATAQ--LPLLSVSWISENSVVAA 266 (361)
T ss_pred ecCCCceEEeecCCCchhccchhhcc--CCceeeEeecCCceeec
Confidence 9999999999987664 233332221 24566666655444333
No 214
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.4e-13 Score=157.38 Aligned_cols=221 Identities=13% Similarity=0.124 Sum_probs=144.1
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecC--CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~d--g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....|...+.+++|||||++|+.++..+ ..|++||+.+++..... .+.+| ..+++|||
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~wSP 257 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAFSP 257 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeECC
Confidence 3345788899999999999854443322 46999999887643210 12333 34689999
Q ss_pred CCCeEEEEe-CCCeEEEE--EccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEee
Q 001248 431 DGSLFGVAY-SRHIVQIY--SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFE 506 (1114)
Q Consensus 431 dg~~las~~-~dg~i~iw--d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~ 506 (1114)
||++|+.++ .+|.+.|| |+.++.. . .+..|...+...+|+|||+. +++++..++...||++... .....+
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l- 331 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV- 331 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe-
Confidence 999998875 67766655 5555543 2 35667778889999999995 3445556788888877532 223333
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
.+.. ....| +++|+.++..+.++ +.+||+.++........ .... ...|+|++
T Consensus 332 ~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~---------------------~~~~sPdG 383 (429)
T PRK01742 332 GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDE---------------------SPSISPNG 383 (429)
T ss_pred cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCC---------------------CceECCCC
Confidence 3433 33455 55667888877765 55589876543321111 0111 23466666
Q ss_pred CEEEEEeCCCeEEEEEC--CCcceEEEeccCCCCCCcCeEEEcCC
Q 001248 587 NRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKD 629 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~d 629 (1114)
++++.++.++.+.+|.+ .+|..+..+..+. ..+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 78999888888888875 3577777776553 35788899873
No 215
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=5.7e-13 Score=153.15 Aligned_cols=269 Identities=14% Similarity=0.142 Sum_probs=177.1
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
+.++..|...|..++.++...-+++||+.||+|++||...-..-. .. .....++.-....+.++...+
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s-----------~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GS-----------ARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ce-----------eeeeEEEeccCCceEEEEecc
Confidence 344455999999999988773379999999999999986432210 00 001112333567899999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCC--ceee--eeEeeccc--cCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGG--DEVR--QHLEIDAH--VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~--~~~~--~~~~l~~h--~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 504 (1114)
.|..+|+++.||.|++.+++-. .... +......+ ...|..-+|....+...++.+..-+.|..||+.+...+.+
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 9999999999999999998752 1111 11111222 2234444555444433677788889999999988776665
Q ss_pred ee--ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC-CCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 505 FE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 505 ~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
++ -..+.|++++.++ .++++++|...|.+.+||++-...+.....+ ..++..+...|-.
T Consensus 1189 lk~~~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~---------------- 1250 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY---------------- 1250 (1431)
T ss_pred hhcCccccceeEEEecC--CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccC----------------
Confidence 54 2458899999755 4479999999999999999876665544332 2344444443322
Q ss_pred ecCCCCEEEE-Ee-CCCeEEEEECCCcceEEEeccCCC-----------------CCCcCeEEEcCCCCEEEEEeCCCcE
Q 001248 582 FDTTKNRFLA-AG-DDFSIKFWDMDSVQLLTSIDADGG-----------------LPASPRIRFNKDGCLLAVSTNDNGI 642 (1114)
Q Consensus 582 ~~~~~~~l~~-~~-~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~~~~s~d~~~l~~~~~dg~i 642 (1114)
+.....++ ++ ..+.|.+|++.+|.+...+..... .-......+...+..+.+|+.|..|
T Consensus 1251 --~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1251 --PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred --CCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence 12223444 33 578899999999877666643210 0111223333456788999999999
Q ss_pred EEEEccCCc
Q 001248 643 KILATSDGI 651 (1114)
Q Consensus 643 ~iwd~~~~~ 651 (1114)
+.||.....
T Consensus 1329 R~wD~~~p~ 1337 (1431)
T KOG1240|consen 1329 RKWDPTRPE 1337 (1431)
T ss_pred eeccCCCcc
Confidence 999987763
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=5.2e-13 Score=131.66 Aligned_cols=242 Identities=14% Similarity=0.191 Sum_probs=169.8
Q ss_pred CCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCC--CeEEEEEecCCCcEEEE-EeCC------CcEEEEEc
Q 001248 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAI-GMDD------SSIQIYNV 889 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~la~-g~~d------g~v~iwd~ 889 (1114)
....+++|+.|..-++++.|...+||+.+-.+.....+.+.. .+..+-| ..++||. |+.+ ..|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf---R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh---hhceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999998899999875443322222222 2333333 2345543 3322 37999997
Q ss_pred ccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
...+++.++. ...+|.+|.+++| .|++.- .+.|.||.....-+. ...+...... ..+.+++=+.+..+||.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~-l~~~et~~NP----kGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL-LHVIETRSNP----KGLCSLCPTSNKSLLAF 153 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh-eeeeecccCC----CceEeecCCCCceEEEc
Confidence 7777777776 5678999999866 455544 567999998853221 1122211111 12333333334556666
Q ss_pred -E-eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCe-EEEEEcCCCeeeEEeCCCcccCCCCCCC
Q 001248 970 -V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSS 1046 (1114)
Q Consensus 970 -~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~-I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
| .-|+|.|-|+...+.-......+|.+.|.|++.+-+|.++|++|..|+ |||||..+|.+++.+. .|...+
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A 227 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRA 227 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchh
Confidence 4 568999999887666323334589999999999999999999999998 9999999999999877 343344
Q ss_pred CccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1047 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1047 ~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
.++ +++|+| |..+|++.|..|+|+++.+...+
T Consensus 228 ~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 228 DIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 477 999999 68999999999999999998755
No 217
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.58 E-value=1.3e-14 Score=138.90 Aligned_cols=169 Identities=19% Similarity=0.263 Sum_probs=134.3
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc---------HHHHHHHhhccCHHHHHHHhccCc--cccCcccchhh
Q 001248 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKYFEDEVHNGNWDDVEKYLSGFT--KVDDNRYSMKI 72 (1114)
Q Consensus 4 ~~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~~~~~~--~~~~~~~~~~~ 72 (1114)
-.+|+++||+.||...||.++|+.|.+|+|+..+ ...+|.+|..|+.++|++.+.++. .++.+ ..+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n---~~l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN---REL 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc---hhH
Confidence 4679999999999999999999999999999772 568999999999999999999983 33433 249
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccchhhhccC-CCChHHHHHHHHHHHhhc
Q 001248 73 FFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY-GDTKSARSIMLVELKKLI 151 (1114)
Q Consensus 73 ~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~~~~~~R~~l~~~l~~~~ 151 (1114)
.|.+++|+++||++++..++|+.|+|.++.|+...++..++.+...|....++..+..+.. --....|+++++.+...|
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~ai 181 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAI 181 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888999999998877666643322110 013457899999888776
Q ss_pred ccCCCcccccCCCCCchhHHHHHHHHhHHHHH
Q 001248 152 EANPLFRDKLQFPNLKNSRLRTLINQSLNWQH 183 (1114)
Q Consensus 152 ~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~Q~ 183 (1114)
-...- . -...+|..||+...+.|.
T Consensus 182 L~~~~---~-----~~~~~l~~llk~~~~~~~ 205 (228)
T KOG2659|consen 182 LASQE---H-----ESEPKLPFLLKLISWAQE 205 (228)
T ss_pred HHHhc---c-----cccchHHHHHHHHHHHHH
Confidence 54221 0 013478888877777663
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=2.6e-13 Score=142.54 Aligned_cols=168 Identities=13% Similarity=0.186 Sum_probs=124.7
Q ss_pred eCCCEEEEEe-CCeEEEEEcCCCccccccC----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-----------
Q 001248 828 KNDSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----------- 891 (1114)
Q Consensus 828 ~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~----------- 891 (1114)
+.+--+.+|- -|.|.+.|....+..+.+. .....|+|+.|-|.+...+.++-.+|.+++||..-
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 4555666676 6888888876533222221 12467999999997777888888999999997531
Q ss_pred ---ce--------------EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCC
Q 001248 892 ---DE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 954 (1114)
Q Consensus 892 ---~~--------------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1114)
+. .+..+.--.+.|+.++|||||++||+.+.||.++|+|..+.+. +.....-. +.
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL-----lg~mkSYF---GG 334 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL-----LGVMKSYF---GG 334 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH-----HHHHHhhc---cc
Confidence 11 1111222345789999999999999999999999999998443 22222111 47
Q ss_pred ceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECC
Q 001248 955 DTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC 1005 (1114)
Q Consensus 955 i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~ 1005 (1114)
..+++|||||+|+++ +.|.-|.||.....+.+.. .++|.++|+.++|.|
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR--GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR--GQGHKSWVSVVAFDP 384 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEeccceEEEe--ccccccceeeEeecc
Confidence 899999999999999 6899999999998887765 359999999999987
No 219
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.58 E-value=1.2e-10 Score=120.71 Aligned_cols=145 Identities=11% Similarity=0.057 Sum_probs=107.5
Q ss_pred cccceEEEEEccCcceeeecccCc-eEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee
Q 001248 750 RATKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
+...|.-..+..+++.++.+..|| .+-|++.. ++...... +.-+.|.++..++
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr~e----~~lg~I~av~vs~ 411 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKRIE----KDLGNIEAVKVSP 411 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEEee----CCccceEEEEEcC
Confidence 344566666666666788888887 67776654 33322211 1456799999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC----cEEEEEcccceEEEeeccccc
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSK 903 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg----~v~iwd~~~~~~~~~l~~h~~ 903 (1114)
||++++++. ...|.+.|+.+++....-+...+-|+..+|+| +++++|.+--+| .|++||+.+++....-. ..+
T Consensus 412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 999999998 47899999999887666666677899999999 999999988777 68999999888654433 233
Q ss_pred CeeEEEEcCCCCEEEEEeC
Q 001248 904 RITGLAFSHALNVLVSSGA 922 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~ 922 (1114)
.=.+-+|.||+++|.--+.
T Consensus 490 ~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 490 YDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cccCcccCCCCcEEEEEec
Confidence 3456789999999876543
No 220
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=2.8e-12 Score=140.98 Aligned_cols=325 Identities=11% Similarity=0.117 Sum_probs=198.4
Q ss_pred EEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECC
Q 001248 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD 604 (1114)
Q Consensus 525 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 604 (1114)
++++-..++.|.+.|..+.+....+.........+.+++||+ ++++.+.||.|.++|+.
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr---------------------~~yv~~rdg~vsviD~~ 66 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR---------------------YLYVANRDGTVSVIDLA 66 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS---------------------EEEEEETTSEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC---------------------EEEEEcCCCeEEEEECC
Confidence 345666789999999998777776665444334445555555 67888899999999999
Q ss_pred CcceEEEeccCCCCCCcCeEEEcCCCCEEEEEe-CCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhh
Q 001248 605 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 683 (1114)
Q Consensus 605 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1114)
+++.+.++..... ..++++|+||++++++. .++.+.++|..+. +.++.+.......
T Consensus 67 ~~~~v~~i~~G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~------------------- 123 (369)
T PF02239_consen 67 TGKVVATIKVGGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPV------------------- 123 (369)
T ss_dssp SSSEEEEEE-SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-T-------------------
T ss_pred cccEEEEEecCCC---cceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccc-------------------
Confidence 9999999876433 57899999999998775 6899999999887 4454442211100
Q ss_pred hhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCc
Q 001248 684 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG 763 (1114)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~ 763 (1114)
.....++..+..++..
T Consensus 124 ----------------------------------------------------------------~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 124 ----------------------------------------------------------------DGPESRVAAIVASPGR 139 (369)
T ss_dssp ----------------------------------------------------------------TTS---EEEEEE-SSS
T ss_pred ----------------------------------------------------------------cccCCCceeEEecCCC
Confidence 0023567777778887
Q ss_pred ceeeecccC-ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCe
Q 001248 764 NAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGK 840 (1114)
Q Consensus 764 ~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~ 840 (1114)
..++..-.| +.|.+-|..... .+....+ ..........|+|++++++++. ++.
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~---------------------~~~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPK---------------------NLKVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSS---------------------CEEEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CEEEEEEccCCeEEEEEecccc---------------------ccceeee---cccccccccccCcccceeeecccccce
Confidence 755555444 766655543210 0000000 0233455789999999988775 689
Q ss_pred EEEEEcCCCccccccCC----CCCCeEEEEEecC---------CCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE
Q 001248 841 ISLFNMMTFKTMATFMP----PPPAATFLAFHPQ---------DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1114)
Q Consensus 841 i~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~---------d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1114)
|-++|..+++.+..+.. |..+...+ .+|. .+...++.-....+.+||..+++.++++...... .-
T Consensus 196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lF 273 (369)
T PF02239_consen 196 IAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LF 273 (369)
T ss_dssp EEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---
T ss_pred eEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ce
Confidence 99999998877655421 22222222 1221 2223322223346678999999999999887776 67
Q ss_pred EEEcCCCCEEEEE----eCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE---eCCeEEEEEc
Q 001248 908 LAFSHALNVLVSS----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFET 980 (1114)
Q Consensus 908 l~~s~d~~~l~s~----s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~---~d~~i~iwd~ 980 (1114)
+..+|+++++.+. ...++|.++|.++.+... .+....+ ..+..+.|++||+++.++ .++.|.+||.
T Consensus 274 i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 274 IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred eecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 8889999999987 455899999999854321 1111111 137899999999988773 3448999999
Q ss_pred CCCceeeeee
Q 001248 981 TKLECVKQWV 990 (1114)
Q Consensus 981 ~~~~~~~~~~ 990 (1114)
.+.+.+..+.
T Consensus 347 ~Tl~~~~~i~ 356 (369)
T PF02239_consen 347 KTLKEKKRIP 356 (369)
T ss_dssp TTTEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999988765
No 221
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.57 E-value=2.5e-11 Score=138.46 Aligned_cols=197 Identities=14% Similarity=0.198 Sum_probs=150.3
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCC-----CeeEEEEcCCCC
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS 433 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 433 (1114)
+.|....+.-+.+. ++.++.++.+.+||...+..... ..+.. ...-+-++++.-
T Consensus 88 ~wi~g~~l~~e~k~-i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~ 146 (967)
T KOG0974|consen 88 DWIFGAKLFEENKK-IALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEEL 146 (967)
T ss_pred ccccccchhhhcce-EEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEE
Confidence 44444566666664 88888999999999987655431 11111 223345678888
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee-EeeccccCE
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPV 512 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v 512 (1114)
++++|+.-+.|.+|+......-. .+.||.+.|.++.|+.||. ++++.|+|.++++|++++++... +.-+|...|
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred EEEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCccccccccee
Confidence 99999999999999998332211 4789999999999999999 89999999999999999998876 777899999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
+.++|.+. .+++++.|.+.++|+.+..... .+.+|..+.+..+..+++....+++
T Consensus 222 w~~~~~~n----~i~t~gedctcrvW~~~~~~l~---------------------~y~~h~g~~iw~~~~~~~~~~~vT~ 276 (967)
T KOG0974|consen 222 WACCFLPN----RIITVGEDCTCRVWGVNGTQLE---------------------VYDEHSGKGIWKIAVPIGVIIKVTG 276 (967)
T ss_pred EEEEeccc----eeEEeccceEEEEEecccceeh---------------------hhhhhhhcceeEEEEcCCceEEEee
Confidence 99998653 8999999999999966532211 3344444455666666666789999
Q ss_pred eCCCeEEEEECCCc
Q 001248 593 GDDFSIKFWDMDSV 606 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~ 606 (1114)
+.|+.+++|++...
T Consensus 277 g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 277 GNDSTLKLWDLNGR 290 (967)
T ss_pred ccCcchhhhhhhcc
Confidence 99999999998653
No 222
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.54 E-value=8.5e-13 Score=130.11 Aligned_cols=244 Identities=15% Similarity=0.125 Sum_probs=181.7
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCC---ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF---KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV- 891 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~---~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~- 891 (1114)
...+|+|.+|++|+..+|++. ...|.||..... +..+++..|...|+.+.|+| ..+.|++++.|..-++|...+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence 356899999999999999998 678999988654 46788999999999999999 888999999999999999843
Q ss_pred --ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 892 --DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 892 --~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
.+....+.-|...+++|.|+|..+.+|+||.-+.|.||-++..+. -+....+... ....|.++.|+|++-+|++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd-WWVsKhikkP---irStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND-WWVSKHIKKP---IRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc-eehhhhhCCc---cccceeeeeccCCcceecc
Confidence 345556677899999999999999999999999999998876321 1111111111 1247899999999999999
Q ss_pred -EeCCeEEEEEcC-----C-------------CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeee
Q 001248 970 -VHETQLAIFETT-----K-------------LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 970 -~~d~~i~iwd~~-----~-------------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
+.|+..+||..- . |+.+.++. ...+.|..+.|+|+|..|+-.+.|.+|.+=|....+..
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 589999998732 1 12222221 33678999999999999999999999999998777532
Q ss_pred EEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1031 CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
.......++| -+++.|.. .+.++.++.|+.=.++...
T Consensus 242 v~~~~~~~lP---------~ls~~~is--e~~vv~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 242 VQSVATAQLP---------LLSVSWIS--ENSVVAAGYDCGPVLFVTD 278 (361)
T ss_pred ccchhhccCC---------ceeeEeec--CCceeecCCCCCceEEEec
Confidence 2111112233 22566665 3566667777554554443
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.54 E-value=2.8e-12 Score=140.98 Aligned_cols=321 Identities=14% Similarity=0.115 Sum_probs=191.2
Q ss_pred eEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEE
Q 001248 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1114)
Q Consensus 480 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 559 (1114)
+++++-..++.|.+.|..+.+.+.++......-..+. +++||+++++.+.||.|.++|+.+.+....+.. +....++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~--~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLK--FSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGI 83 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEE--ecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceE
Confidence 4567777889999999999999999986544323344 466778999999999999999999876665544 3345566
Q ss_pred EEecCCCeEEeeecccceeEEEecCCCCEEEEE-eCCCeEEEEECCCcceEEEeccCCC-----CCCcCeEEEcCCCCEE
Q 001248 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLL 633 (1114)
Q Consensus 560 ~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~l 633 (1114)
++++||+ +++++ ...+.+.++|..+.+.++.+...+. ...+..+..++....+
T Consensus 84 ~~s~DG~---------------------~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 84 AVSPDGK---------------------YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF 142 (369)
T ss_dssp EE--TTT---------------------EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred EEcCCCC---------------------EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence 6666666 56554 4799999999999999988764321 2345677778887755
Q ss_pred EEEeC-CCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccC
Q 001248 634 AVSTN-DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA 712 (1114)
Q Consensus 634 ~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1114)
+..-. .+.|.+.|..+........
T Consensus 143 Vv~lkd~~~I~vVdy~d~~~~~~~~------------------------------------------------------- 167 (369)
T PF02239_consen 143 VVNLKDTGEIWVVDYSDPKNLKVTT------------------------------------------------------- 167 (369)
T ss_dssp EEEETTTTEEEEEETTTSSCEEEEE-------------------------------------------------------
T ss_pred EEEEccCCeEEEEEeccccccceee-------------------------------------------------------
Confidence 55544 4677766665441111000
Q ss_pred CCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeec-ccCceEEEEeecccccCCCCCc
Q 001248 713 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL-ASNAIHLLWKWQRTERNSSGKA 791 (1114)
Q Consensus 713 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~ 791 (1114)
.+ .........|+|++++++++ ..+..+-++|......
T Consensus 168 ----------------i~-------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~------ 206 (369)
T PF02239_consen 168 ----------------IK-------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL------ 206 (369)
T ss_dssp ----------------EE---------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE------
T ss_pred ----------------ec-------------------ccccccccccCcccceeeecccccceeEEEeeccceE------
Confidence 00 11234567889999887664 3356777777653221
Q ss_pred cccccccccCCCCCccccccCCCCCCCCCcc-------EEEE--eeCCCEEEEE-eCCeEEEEEcCCCccccccCCCCCC
Q 001248 792 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-------CFAL--SKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPPPA 861 (1114)
Q Consensus 792 ~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~-------~v~~--s~d~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 861 (1114)
+.....|... |..+.. ...| +..+...++. +.+.+.+||..+++.++++......
T Consensus 207 -------v~~i~~g~~p--------~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g 271 (369)
T PF02239_consen 207 -------VALIDTGKKP--------HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG 271 (369)
T ss_dssp -------EEEEE-SSSB--------EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred -------EEEeeccccc--------cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence 0111111110 111111 1112 2333333222 3456678999999999998876666
Q ss_pred eEEEEEecCCCcEEEEE----eCCCcEEEEEcccceEEEeecccc-cCeeEEEEcCCCCEEEEEeCCC--cEEEEeCCCC
Q 001248 862 ATFLAFHPQDNNIIAIG----MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS--QLCVWSSDGW 934 (1114)
Q Consensus 862 i~~l~~sp~d~~~la~g----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~D~--~v~iwd~~~~ 934 (1114)
..+..+| +++++.+. ...++|.++|..+.+.+..+.... ..+..+.|++||+.+..+..++ .|.|||..+.
T Consensus 272 -lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 272 -LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp ---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred -ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 8888899 88888877 456899999999998888775433 3588999999999776554443 6999999996
Q ss_pred ccc
Q 001248 935 EKQ 937 (1114)
Q Consensus 935 ~~~ 937 (1114)
+..
T Consensus 350 ~~~ 352 (369)
T PF02239_consen 350 KEK 352 (369)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=5.8e-12 Score=126.10 Aligned_cols=285 Identities=12% Similarity=0.160 Sum_probs=188.2
Q ss_pred ccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC
Q 001248 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~ 830 (1114)
+..+..+++++.-..++++..|-.|++|+-+... ...+. ......|+|++|-|.+
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~--------------------pt~Lk-----s~sQrnvtclawRPls 152 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC--------------------PTKLK-----SVSQRNVTCLAWRPLS 152 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCC--------------------Cceec-----chhhcceeEEEeccCC
Confidence 4567889999988888999999999999754210 00000 0145679999999965
Q ss_pred -CEEEEEeCCeEEEEEcCCCcc----c--------c--ccCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEcccceE
Q 001248 831 -SYVMSASGGKISLFNMMTFKT----M--------A--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEV 894 (1114)
Q Consensus 831 -~~l~~~~dg~i~iwd~~~~~~----~--------~--~~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~~~~~ 894 (1114)
+-|++|+.+.|.+|.....-. + . ...+| ..|++++|.+ ||..+++++ .|..|.|||..++..
T Consensus 153 aselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 153 ASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred cceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCc
Confidence 467888899999998752111 1 1 11233 5799999999 788888776 567899999999876
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCC
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 973 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~ 973 (1114)
+.-..--.+.++-+.|||||.+|+.++-|+..++|+.. +.....+.+ + .+.|...+|+|+|++|..+.-+
T Consensus 231 ~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-----g----sgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 231 IPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-----G----SGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred ccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-----c----CCceeeeeecCCCCEEEEEEcC
Confidence 65543445678899999999999999999999999543 332222221 1 1368899999999999886666
Q ss_pred eEEEEEcCCCceeee-----------eec-------CC----CCcCeeEEEECCCCCEEEEEEcCCe--------EEEEE
Q 001248 974 QLAIFETTKLECVKQ-----------WVP-------RE----SSAPITHATFSCDSQLVYACFLDAT--------VCVFS 1023 (1114)
Q Consensus 974 ~i~iwd~~~~~~~~~-----------~~~-------~~----h~~~v~~l~~s~dg~~l~s~s~Dg~--------I~vwd 1023 (1114)
.-++|.+.-...... +.. .. -.+++.+++|.|.|.+||+....+. |.+||
T Consensus 302 sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fd 381 (445)
T KOG2139|consen 302 SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFD 381 (445)
T ss_pred CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhc
Confidence 555655432111000 000 01 1567899999999999998775443 66677
Q ss_pred cCCCeeeEEeCCCcccCCCCCCCCccceEEEecC--CCCCeEEEEeCCCcEEEEecc
Q 001248 1024 AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP--QEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
....-.+ .+.+..... + -.|-.++|+| .++.+|..+=..|.+.-+++.
T Consensus 382 tr~sp~v-els~cg~i~-g-----e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 382 TRKSPPV-ELSYCGMIG-G-----EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccccCce-EEEeccccc-C-----CCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 6543322 222222221 1 1233566665 355567777677777766654
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=8e-12 Score=125.12 Aligned_cols=287 Identities=11% Similarity=0.144 Sum_probs=179.8
Q ss_pred ccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccc
Q 001248 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 795 (1114)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1114)
-++++..|..|++|+-.. ..+..++ ......|++++|-|.+..-++.+--+-|.+|..+.......
T Consensus 112 ~fava~nddvVriy~kss-t~pt~Lk------s~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r------- 177 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS-TCPTKLK------SVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR------- 177 (445)
T ss_pred hhhhhccCcEEEEeccCC-CCCceec------chhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-------
Confidence 467889999999999776 3332222 12457899999999776555555556788998764221100
Q ss_pred cccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCc
Q 001248 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 873 (1114)
Q Consensus 796 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~ 873 (1114)
.++.....-++ .+.+.+| ..|+++.+.+||..+++++ |..|.|||..++..+....-..+.++-+.||| |+.
T Consensus 178 ~~~~~s~~~~q----vl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd 251 (445)
T KOG2139|consen 178 NIRMMSTHHLQ----VLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGD 251 (445)
T ss_pred ccccccccchh----heeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCC
Confidence 00000000111 1223335 7899999999999999998 68899999999887665545567799999999 899
Q ss_pred EEEEEeCCCcEEEEEcc-cceEEEeecccccCeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCcccc----------ccc
Q 001248 874 IIAIGMDDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQK----------NRF 941 (1114)
Q Consensus 874 ~la~g~~dg~v~iwd~~-~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~-s~D~~v~iwd~~~~~~~~----------~~~ 941 (1114)
+|..++-|+..++|... +..... ..--++.|...+|+|+|++|..+ +..- ++|.+...+... ...
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred EEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeee
Confidence 99999999999999544 333322 22234589999999999886544 3333 344432211100 000
Q ss_pred ------cccCCCCCCCCCCceEEEEccCCcEEEEEeCC---------eEEEEEcCCCceeeeeecCC-CCcCeeEEEECC
Q 001248 942 ------LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET---------QLAIFETTKLECVKQWVPRE-SSAPITHATFSC 1005 (1114)
Q Consensus 942 ------~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~---------~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~s~ 1005 (1114)
.....+.....+.+.+++|.|.|.+||+...+ .|.+||....-.+......- .......++|.|
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~p 408 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGP 408 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeee
Confidence 11111222223567899999999999995322 35667766544333221110 122355666765
Q ss_pred ---CCCEEEEEEcCCeEEEEEcC
Q 001248 1006 ---DSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 1006 ---dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
++.+|..+=..|.+.-|++.
T Consensus 409 l~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 409 LKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccCCcEEEEEeccCceEeeeeE
Confidence 66677767667777777653
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.7e-12 Score=137.39 Aligned_cols=257 Identities=14% Similarity=0.163 Sum_probs=178.2
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCC--CCCeeEEEE
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP--GVSVNRVIW 428 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h--~~~V~~l~~ 428 (1114)
+++-+.+...-+.|..||||+|++|||...-.|++||+..-..-. ..| ...|...-+
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~feiL 102 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEIL 102 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEEe
Confidence 456677899999999999999999999999999999998654322 222 235666667
Q ss_pred cCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc
Q 001248 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1114)
Q Consensus 429 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 508 (1114)
|.|-..++.-..|.+|.+..--. .-.. ..+. ..-..|+++.-.-. |+.++....|+-.+++.|..+..+...
T Consensus 103 sDD~SK~v~L~~DR~IefHak~G-~hy~--~RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~ 174 (703)
T KOG2321|consen 103 SDDYSKSVFLQNDRTIEFHAKYG-RHYR--TRIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETD 174 (703)
T ss_pred ccchhhheEeecCceeeehhhcC-eeee--eecC---cCCccccccCCCcc--EEEeecCcceEEEEccccccccccccc
Confidence 77777777777888776654322 1110 0111 12234555544443 444444567999999999999999888
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
.+.++++.+++-. .+|++|+.+|.|.+||.+.......+..... |.+. |.+ .....++.+.|+.+|-.
T Consensus 175 ~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~---pg~------~~~~svTal~F~d~gL~ 242 (703)
T KOG2321|consen 175 SGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSH---PGG------DAAPSVTALKFRDDGLH 242 (703)
T ss_pred cccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccc-cCCC---ccc------cccCcceEEEecCCcee
Confidence 8999999876543 5888999999999999998766655443322 1111 100 11124666777777778
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCC--CCEEEEEeCCCcEEEEEccCC
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+++|...|.+.|||+++.+++..-. |+..-+|..+.|.+. +..+++. ....++|||-.+|
T Consensus 243 ~aVGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 243 VAVGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG 304 (703)
T ss_pred EEeeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence 9999999999999999988876554 444567889999874 3445544 3478999998888
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.4e-12 Score=138.15 Aligned_cols=193 Identities=11% Similarity=0.205 Sum_probs=152.8
Q ss_pred EEEe-eCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec---
Q 001248 824 FALS-KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--- 899 (1114)
Q Consensus 824 v~~s-~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~--- 899 (1114)
++++ +.-.++++|+...|+-++++.|..+..+....+.+.++..++ -..+||+|+.+|.|..||..+...+..+.
T Consensus 139 m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 139 MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred ccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeeccc
Confidence 4443 344566677778899999999999999988889999999999 78899999999999999998876665553
Q ss_pred ---cccc-----CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC--CcEEEE
Q 001248 900 ---GHSK-----RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLV 969 (1114)
Q Consensus 900 ---~h~~-----~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd--g~~l~~ 969 (1114)
.|.+ .|+++.|+.||-.+++|+.+|.|.|||+.+.+... +... +. ..+|..+.|.+. +..+++
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~---~kdh-~~---e~pi~~l~~~~~~~q~~v~S 290 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL---VKDH-GY---ELPIKKLDWQDTDQQNKVVS 290 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee---eccc-CC---ccceeeecccccCCCceEEe
Confidence 2333 49999999999999999999999999999854311 1111 11 136888888765 555666
Q ss_pred EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCC
Q 001248 970 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 970 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
.....++|||-.+|+....+.. ...+..+|+-|++.+++++..++.+..|=+...
T Consensus 291 ~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 291 MDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred cchHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 6777899999999999887753 556999999999999999999888877766543
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=2.4e-13 Score=142.73 Aligned_cols=155 Identities=19% Similarity=0.262 Sum_probs=116.9
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEE-----------eeeeeeccCCCCcccccccccCCCCCeeE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-----------RNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~-----------~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1114)
.+..|+|+.|-|-+..++..+-.+|.+++||.+--..... +.+..|.-.....|.. .+.--++.|..
T Consensus 218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~--~w~~~~g~in~ 295 (636)
T KOG2394|consen 218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA--RWHIGEGSINE 295 (636)
T ss_pred cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc--eeEeccccccc
Confidence 3488999999998887777788899999998632111000 1111110000001111 12222458999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
++|||||++||+.+.||.++|+|..+.+.+. .++.--+...|++|||||+ ++++|++|-.|.||.+..++.+..-
T Consensus 296 f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred eeEcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEec
Confidence 9999999999999999999999999876554 3444556899999999999 8999999999999999999999999
Q ss_pred eccccCEEEEeec
Q 001248 506 EGHEAPVYSVCPH 518 (1114)
Q Consensus 506 ~~h~~~v~~~~~~ 518 (1114)
++|..+|..|+|.
T Consensus 371 qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 371 QGHKSWVSVVAFD 383 (636)
T ss_pred cccccceeeEeec
Confidence 9999999999986
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=6e-14 Score=144.60 Aligned_cols=189 Identities=14% Similarity=0.211 Sum_probs=144.3
Q ss_pred CccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee
Q 001248 820 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l 898 (1114)
.|..+.|-|.--+|++++ .|.++.-|+.+|+.+..+....+.+..++-+| -+..+-+|..+|+|.+|...+.+.+..+
T Consensus 211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHH
Confidence 344555666666677777 68899999999999999988889999999999 7889999999999999999999999999
Q ss_pred cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEE
Q 001248 899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 978 (1114)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iw 978 (1114)
..|.++|.+|++.++|+++||++.|..++|||+...... ...+. ......++||.-|. ||.+....|.||
T Consensus 290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql-------~t~~t--p~~a~~ls~Sqkgl-LA~~~G~~v~iw 359 (545)
T KOG1272|consen 290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL-------HTYRT--PHPASNLSLSQKGL-LALSYGDHVQIW 359 (545)
T ss_pred HhcCCCcceEEECCCCcEEeecccccceeEeeecccccc-------ceeec--CCCccccccccccc-eeeecCCeeeee
Confidence 999999999999999999999999999999999984321 11111 13557788887764 566667788999
Q ss_pred Ec-CCCc-eeeeeecCCC--CcCeeEEEECCCCCEEEEEEcCCeEE
Q 001248 979 ET-TKLE-CVKQWVPRES--SAPITHATFSCDSQLVYACFLDATVC 1020 (1114)
Q Consensus 979 d~-~~~~-~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~s~Dg~I~ 1020 (1114)
.- -.+. +...... .| .+.|..+.|.|-...|-.|-.-|.-.
T Consensus 360 ~d~~~~s~~~~~pYm-~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 360 KDALKGSGHGETPYM-NHRCGGPVEDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred hhhhcCCCCCCcchh-hhccCcccccceeccHHHeeeccccCCcee
Confidence 52 2222 2111111 22 55899999999777777666555433
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=6.5e-13 Score=137.12 Aligned_cols=262 Identities=18% Similarity=0.224 Sum_probs=199.2
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeee------------------------eeeccCCCCcccccc
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF------------------------KVWDLGACSMPLQAA 414 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~------------------------~~~d~~~~~~~~~~~ 414 (1114)
-....+.|+.+|++ |+.|+..|.|..+|+.+++.....++ .+||-...+...
T Consensus 130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHC--- 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHC--- 205 (545)
T ss_pred cCCeeeeecCCccE-EEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEee---
Confidence 34578999999997 66778899999999999988776333 344433222211
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
+..| ..|..+.|-|.--+|++++..|.++.-|+++|+.+. .+..-.+.+..|.-+|-+. ++-+|...|+|.+|
T Consensus 206 -lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa---~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlW 278 (545)
T KOG1272|consen 206 -LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA---SIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLW 278 (545)
T ss_pred -hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhH---HHHccCCccchhhcCCccc--eEEEcCCCceEEec
Confidence 2222 468889999999999999999999999999999887 4556677888999999888 78899999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
.....+++..+-.|.++|.++++ +++|.+++|.|.|..++|||++....+.++.. ......+++|..|
T Consensus 279 SP~skePLvKiLcH~g~V~siAv--~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--------- 346 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAV--DRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--------- 346 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEE--CCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc---------
Confidence 99999999888899999999997 45679999999999999999998877666655 4455666666655
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEEC-CC--cceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~--~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
+++.+....|.||.- -. +.....+..|.-...|..+.|.|-...|-+|...|.-.+.-...|.
T Consensus 347 --------------lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGe 412 (545)
T KOG1272|consen 347 --------------LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGE 412 (545)
T ss_pred --------------ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCC
Confidence 566677778999952 22 2222233334334578999999988888888887776666555554
Q ss_pred cceeec
Q 001248 652 RLLRTF 657 (1114)
Q Consensus 652 ~~~~~~ 657 (1114)
..+..+
T Consensus 413 PN~Ds~ 418 (545)
T KOG1272|consen 413 PNYDSL 418 (545)
T ss_pred CCcchh
Confidence 444433
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.7e-11 Score=139.60 Aligned_cols=221 Identities=9% Similarity=0.018 Sum_probs=137.9
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEe--cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~--~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....+...+.+.+|||||++|+++.. .+..|++|++.+|+... +....+.+..++|||
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SP 252 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSP 252 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECC
Confidence 33447778999999999998554432 23579999998876533 222223355689999
Q ss_pred CCCeEEEE-eCCC--eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEec-CCCC--EEEEeCCCCcceeE
Q 001248 431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAKQYI 504 (1114)
Q Consensus 431 dg~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~-~d~~--i~iwd~~~~~~~~~ 504 (1114)
||+.|+.. +.+| .|.+||+.+++..+ +..+...+....|+|||+. |+..+ .++. |.++|+.+++. ..
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-EE
Confidence 99999875 3344 58899998876432 4445557789999999995 44333 3444 55556666543 44
Q ss_pred eeccccCEEEEeeccCCCceEEEEEecC---CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 505 FEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
+..+.......+|+ +||++++..+.+ ..|.+||+.++... .+... ..... ..
T Consensus 326 lt~~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~---------------------p~ 380 (429)
T PRK03629 326 ITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDET---------------------PS 380 (429)
T ss_pred eecCCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCC---------------------ce
Confidence 44344445556664 566777766543 35788888765422 22111 11122 34
Q ss_pred ecCCCCEEEEEeCCCe---EEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 582 FDTTKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
|+|+|..++..+.++. ++++++ +|.....+..+. ..+...+|+|
T Consensus 381 ~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 381 IAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence 5556667777776553 677777 455556665443 3577788887
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.44 E-value=5.1e-10 Score=123.92 Aligned_cols=208 Identities=16% Similarity=0.205 Sum_probs=126.5
Q ss_pred cEEEEeeCCCEEEEEe--CCeEEEEEcCC-Cccccc---c----------CCCCCCeEEEEEecCCCcEEEEEe-CCCcE
Q 001248 822 PCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT---F----------MPPPPAATFLAFHPQDNNIIAIGM-DDSSI 884 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~~--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~sp~d~~~la~g~-~dg~v 884 (1114)
..+++++++++|+++. +|.|.++++.. +..... + +.......++.|+| +++++++.. ....|
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEE
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEE
Confidence 3455555555555554 45555555543 211111 1 12234578999999 777666653 34589
Q ss_pred EEEEcccce--EE--Eeec-ccccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCC--CCccccccccccCCCCCCCCCCce
Q 001248 885 QIYNVRVDE--VK--SKLK-GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSDT 956 (1114)
Q Consensus 885 ~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~ 956 (1114)
++|++.... +. ..+. .....-..++|+||++++.... .+++|.++++. .+.......+..............
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 999997654 32 2222 2334467899999999886654 57789999998 433222222222222111112568
Q ss_pred EEEEccCCcEEEEE--eCCeEEEEEcC--CCce--eeeeecCCCCcCeeEEEECCCCCEEEEEEc-CCeEEEEEc--CCC
Q 001248 957 RVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVPRESSAPITHATFSCDSQLVYACFL-DATVCVFSA--ANL 1027 (1114)
Q Consensus 957 ~v~fspdg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~-Dg~I~vwd~--~~~ 1027 (1114)
.++++|||++|.++ ..+.|.+|++. +++. +..+.. .......++++|+|++|++++. ++.|.+|++ .+|
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 89999999999985 56789999983 3333 333332 2445899999999999998884 568999876 577
Q ss_pred eeeEE
Q 001248 1028 KLRCR 1032 (1114)
Q Consensus 1028 ~~~~~ 1032 (1114)
++...
T Consensus 327 ~l~~~ 331 (345)
T PF10282_consen 327 KLTPV 331 (345)
T ss_dssp EEEEE
T ss_pred cEEEe
Confidence 76544
No 233
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=4.9e-10 Score=121.70 Aligned_cols=550 Identities=11% Similarity=0.116 Sum_probs=307.7
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
......|++|+....| +|+|+.||.++|-.+.+...-.. .--+...+.-.....+.||.+.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCCe-EEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEecccccccc
Confidence 4456789999999996 99999999999999876432110 000111222223346899999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce-eEeeccccCEEEE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSV 515 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~ 515 (1114)
+...+|.|.||-+-.|.-.... .-......|.+|+|..||. .+.....||.|.|=.++..+.- +.+++. ....+
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv 162 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHV 162 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccce
Confidence 9999999999998876533211 1223456789999999999 4666667777655443321100 011110 00112
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcC-------------------C--CCCe---------eeecCCCCeeEEEEEecCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYD-------------------N--LGSR---------VDYEAPGRWCTTMAYSADG 565 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~-------------------~--~~~~---------~~~~~~~~~v~~~~~s~~g 565 (1114)
.|+++ ...++.+-..|.++++|.. + +..+ .....+..++..+++.. |
T Consensus 163 ~ws~D--~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n-G 239 (1189)
T KOG2041|consen 163 LWSED--LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN-G 239 (1189)
T ss_pred eeccc--HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC-c
Confidence 23221 1222223333333333321 0 0000 00111222334444422 2
Q ss_pred Ce-EEee---------ecccceeEEEecCCCCEEEEEeCC---------CeEEEEECCCcceEEEeccCCCCCCcCeEEE
Q 001248 566 TR-TYQG---------FRKRSLGVVQFDTTKNRFLAAGDD---------FSIKFWDMDSVQLLTSIDADGGLPASPRIRF 626 (1114)
Q Consensus 566 ~~-~~~~---------~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 626 (1114)
+. +... ..+-.+.-..|+++|..|+.++.+ +.|.+|.. -|+.+.+++.++. .|++++|
T Consensus 240 r~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~It~lsW 316 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CITGLSW 316 (1189)
T ss_pred eehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--eeeeeEE
Confidence 21 1111 111233446788888888887643 35666653 6788888887754 7999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCC
Q 001248 627 NKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG 706 (1114)
Q Consensus 627 s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1114)
-..|-.++.+- |+.|.+-+++...+ .-.++...--+...
T Consensus 317 Eg~gLriA~Av-dsfiyfanIRP~yk-Wgy~e~TvVy~y~~--------------------------------------- 355 (1189)
T KOG2041|consen 317 EGTGLRIAIAV-DSFIYFANIRPEYK-WGYIEETVVYVYQK--------------------------------------- 355 (1189)
T ss_pred cCCceEEEEEe-cceEEEEeecccce-EEEeeeEEEEEEcc---------------------------------------
Confidence 98887777654 57888877765421 11111000000000
Q ss_pred CccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccC
Q 001248 707 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN 786 (1114)
Q Consensus 707 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~ 786 (1114)
--.-.-.|.+||..+.....+. -....+++|+.+.-.|+.-..+|.+.-++.-.. +
T Consensus 356 ------------~e~p~y~i~Fwdtk~nek~vK~----------V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~-~- 411 (1189)
T KOG2041|consen 356 ------------EELPQYGIMFWDTKTNEKTVKT----------VTHFENMAFYREHCVLINRQDDGVIPEYSTLEN-R- 411 (1189)
T ss_pred ------------CCCcceEEEEEecccChhhhhh----------hcceeehheecccEEEEeccccCCCcchhhhhc-c-
Confidence 0000135778888764433221 123456667666666666666666554321000 0
Q ss_pred CCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCC---CCCCeE
Q 001248 787 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAAT 863 (1114)
Q Consensus 787 ~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~ 863 (1114)
+ ......+.+. -|..+. .....|.-.-..-++.+++.++...+.+|.....+....+.+ +...-
T Consensus 412 --~---~~~~l~LCNS-IGT~lD------~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr- 478 (1189)
T KOG2041|consen 412 --S---RVYFLQLCNS-IGTSLD------YKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGR- 478 (1189)
T ss_pred --c---ceEEEeeecc-cCCcCC------CCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhccccc-
Confidence 0 0000000000 011000 011112222233477888889988899999876655444432 11111
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 001248 864 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ 943 (1114)
Q Consensus 864 ~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 943 (1114)
|+- ...-+|+.|+++. .. ..++.|..++|.+++.+ .++|..+-..|.|.-|.+.+......-
T Consensus 479 ---~h~---Ddtp~ga~d~~l~---ys----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y--- 540 (1189)
T KOG2041|consen 479 ---FHG---DDTPEGAQDRTLE---YS----TKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSY--- 540 (1189)
T ss_pred ---ccC---CCCccchhhceee---cc----ceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeecc---
Confidence 332 1223445565442 11 35678889999999997 578999999999999999874322111
Q ss_pred cCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcC---CCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeE
Q 001248 944 IPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT---KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019 (1114)
Q Consensus 944 ~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I 1019 (1114)
+....+..++..-+...+|+ -.-|.+.++|+. ++..+..+. ......|+.+.|..|...|++-.....+
T Consensus 541 ------~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~-~~errDVWd~~Wa~dNp~llAlmeKtrm 613 (1189)
T KOG2041|consen 541 ------PVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIY-TSERRDVWDYEWAQDNPNLLALMEKTRM 613 (1189)
T ss_pred ------ccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeee-hhhhhhhhhhhhccCCchHHhhhhhceE
Confidence 11236788999988888887 466788887765 344444332 2336789999999888877766666667
Q ss_pred EEEEcC
Q 001248 1020 CVFSAA 1025 (1114)
Q Consensus 1020 ~vwd~~ 1025 (1114)
+|++-.
T Consensus 614 yifrgn 619 (1189)
T KOG2041|consen 614 YIFRGN 619 (1189)
T ss_pred EEecCc
Confidence 777643
No 234
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3.1e-10 Score=121.06 Aligned_cols=285 Identities=16% Similarity=0.249 Sum_probs=180.5
Q ss_pred ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
.+.++.|+|.|.+|.+--. |.+.. ........+++|+.+++......... .... .+..|+.|..+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~------~~i~~------~~~~~~pn~~v~~vet~~~~s~~q~k--~Q~~-W~~qfs~dEsl 139 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEP------WAIYG------PKNASNPNVLVYNVETGVQRSQIQKK--MQNG-WVPQFSIDESL 139 (566)
T ss_pred eeeeeeecccccccccccc------ccccc------CCCCCCCceeeeeeccceehhheehh--hhcC-cccccccchhh
Confidence 5667788888876654211 00000 00001223456777674433221111 2222 57889999887
Q ss_pred EEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCC--CcEEEE-----EeCCCcEEEEEcccceEEEee--cc-cc
Q 001248 833 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD--NNIIAI-----GMDDSSIQIYNVRVDEVKSKL--KG-HS 902 (1114)
Q Consensus 833 l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d--~~~la~-----g~~dg~v~iwd~~~~~~~~~l--~~-h~ 902 (1114)
.+--..+.+.+|+..+.+.+.. .-|...|+.+++|| + ...+|+ ++.-+.|+||...-...-..+ +. ..
T Consensus 140 ~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk 217 (566)
T KOG2315|consen 140 AARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK 217 (566)
T ss_pred hhhhhcceEEEEecCCccceee-eeeccceeeEEecC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc
Confidence 7766688999999987443322 23567899999999 5 234543 345568999987632211111 00 11
Q ss_pred cCeeEEEEcCCCCE---EEEEeCC---------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-
Q 001248 903 KRITGLAFSHALNV---LVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 969 (1114)
Q Consensus 903 ~~V~~l~~s~d~~~---l~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~- 969 (1114)
..=..+.|++-|.- |++..-| .++.+.++++.. ..+.... .++|.++.|+|+|+-+++
T Consensus 218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s----~~V~L~k-----~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES----VSVPLLK-----EGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce----EEEecCC-----CCCceEEEECCCCCEEEEE
Confidence 11234678776653 3333334 367888877311 1122221 258999999999988877
Q ss_pred -E-eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCCeeeEEeCCCcccCCCCC
Q 001248 970 -V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVS 1044 (1114)
Q Consensus 970 -~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~ 1044 (1114)
| .-..+.|||++ +..+..+. .++-.++-|+|.|++|+.++-+ |.+-|||+.+.+++.++. .
T Consensus 289 yGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~----a----- 354 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK----A----- 354 (566)
T ss_pred EecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc----c-----
Confidence 4 55789999986 55555554 5677899999999998877754 789999999999998776 1
Q ss_pred CCCccceEEEecCCCCCeEEEEeC------CCcEEEEeccCCC
Q 001248 1045 SSNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1081 (1114)
Q Consensus 1045 ~~~v~~~~~~~~~~d~~~l~s~~~------Dg~v~vW~i~~~~ 1081 (1114)
...+.+.|+| ||.+++|+.. |+.++||++....
T Consensus 355 ---~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 355 ---ANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred ---CCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCce
Confidence 1233689999 7999988875 6899999987654
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=8.6e-11 Score=133.90 Aligned_cols=223 Identities=13% Similarity=0.147 Sum_probs=137.7
Q ss_pred cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC---CCeEEEEEccCCceeeee
Q 001248 382 DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQH 458 (1114)
Q Consensus 382 ~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---dg~i~iwd~~~~~~~~~~ 458 (1114)
.|.+||.+...... +..+...+.+.+|||||+.||..+. +..|.+|++.+++.. .
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~- 237 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q- 237 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E-
Confidence 68888887654332 3446678999999999999997642 456999999887633 2
Q ss_pred EeeccccCCeeEEEecCCCCeeEEEEecCCC--CEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-CCeE
Q 001248 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKI 535 (1114)
Q Consensus 459 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~i 535 (1114)
+....+.+..++|+|||+.+ +++.+.++ .|++||+.+++.. .+..+...+....|++ ||+.|+..+. ++..
T Consensus 238 --l~~~~~~~~~~~~SPDG~~L-a~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~ 311 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRP 311 (429)
T ss_pred --ccCCCCCcCCeEECCCCCEE-EEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECC--CCCEEEEEeCCCCCc
Confidence 22233345578999999963 33434444 5999999887654 4444445666777754 5577766665 4445
Q ss_pred EEE--EcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC---CCeEEEEECCCcceEE
Q 001248 536 KAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLT 610 (1114)
Q Consensus 536 ~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~ 610 (1114)
.+| |+.++.. ..+......... ..|+|+|++++..+. ...|++||+.+++..
T Consensus 312 ~Iy~~d~~~g~~-~~lt~~~~~~~~---------------------~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~- 368 (429)
T PRK03629 312 QVYKVNINGGAP-QRITWEGSQNQD---------------------ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 368 (429)
T ss_pred eEEEEECCCCCe-EEeecCCCCccC---------------------EEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence 555 4443322 122212222223 445555556665543 246889999888644
Q ss_pred EeccCCCCCCcCeEEEcCCCCEEEEEeCCCc---EEEEEccCCccceeecccc
Q 001248 611 SIDADGGLPASPRIRFNKDGCLLAVSTNDNG---IKILATSDGIRLLRTFENL 660 (1114)
Q Consensus 611 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~ 660 (1114)
.+.... ......|+|||++|+.++.++. +.++++. + ...+.+.++
T Consensus 369 ~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G-~~~~~l~~~ 416 (429)
T PRK03629 369 VLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-G-RFKARLPAT 416 (429)
T ss_pred EeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECC-C-CCeEECccC
Confidence 333221 2356889999999999988765 5566653 3 233444443
No 236
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.42 E-value=2.2e-08 Score=122.54 Aligned_cols=538 Identities=12% Similarity=0.138 Sum_probs=287.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEE----EcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLW----EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
..+.|.++.|-+|... ++.+..+|.|.+. +..+.+... ...-...|.|++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 4578999999999986 7788899999999 655544332 23345689999999999
Q ss_pred CeEEEEeCCCeEEEEEccC-------------Cc--ee--------eee----------------------EeeccccCC
Q 001248 433 SLFGVAYSRHIVQIYSYHG-------------GD--EV--------RQH----------------------LEIDAHVGG 467 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~-------------~~--~~--------~~~----------------------~~l~~h~~~ 467 (1114)
..||..+.++++.+.+-.- |+ .+ .+. ..+. +...
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG 211 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence 9999999999888764210 00 00 000 0111 3334
Q ss_pred eeEEEecCCCCeeEEEEecC------CCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec---CCeEEEE
Q 001248 468 VNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAW 538 (1114)
Q Consensus 468 V~~v~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d~~i~~w 538 (1114)
-..|+|-.||+ ++|..+. -..++||+ +.|....+-..-.+--.+++|.| .|+++++... ...|.+|
T Consensus 212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrP--sG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRP--SGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCC--CCCEEEEEEEcCCCcEEEEE
Confidence 56799999999 5665543 25699999 55765444433333334567654 5578887764 3345556
Q ss_pred EcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceE--EEeccCC
Q 001248 539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADG 616 (1114)
Q Consensus 539 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~ 616 (1114)
.-+.. ....+. +.+.++ +..+..+.|++++..|+....|. |.+|-..+-.-. +.+....
T Consensus 287 ErNGL-rhgeF~--------l~~~~~---------~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~ 347 (928)
T PF04762_consen 287 ERNGL-RHGEFT--------LRFDPE---------EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS 347 (928)
T ss_pred ecCCc-EeeeEe--------cCCCCC---------CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence 43211 111111 111111 11344555666666677766554 999988765422 2332222
Q ss_pred CCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccc
Q 001248 617 GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1114)
Q Consensus 617 ~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1114)
...+..+.|+| +...|...+.+|.+..++..-. ...+.. .
T Consensus 348 -~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~-----v~~s~~-------------~-------------------- 388 (928)
T PF04762_consen 348 -SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD-----VSRSPG-------------S-------------------- 388 (928)
T ss_pred -CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE-----EEecCC-------------C--------------------
Confidence 12345699999 5566778887788776654211 000000 0
Q ss_pred ccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceE
Q 001248 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 775 (1114)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 775 (1114)
.++....+..-....+.+-.+.....+.......+. -...|.+++|++++..+++...||.+
T Consensus 389 ---------------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~---~~~~v~~vaf~~~~~~~avl~~d~~l 450 (928)
T PF04762_consen 389 ---------------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE---LPSPVNDVAFSPSNSRFAVLTSDGSL 450 (928)
T ss_pred ---------------CccCceEEEEEeCCeEEEecccccCCCchHhceEEc---CCCCcEEEEEeCCCCeEEEEECCCCE
Confidence 000111111112234555555444433333222211 34689999999999989999999999
Q ss_pred EEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-C---CeEEEEEcCCCc-
Q 001248 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFK- 850 (1114)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d---g~i~iwd~~~~~- 850 (1114)
.+|.+.............. .......... .........+..++|..+...++... + ..+.+++.....
T Consensus 451 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 523 (928)
T PF04762_consen 451 SIYEWDLKNMWSVKPPKLL-----SSISLDSMDI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSEN 523 (928)
T ss_pred EEEEecCCCcccccCcchh-----hhcccccccc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCC
Confidence 9998764322110000000 0000000000 00001345577888888887777665 3 468888874332
Q ss_pred --cccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE-EEeecccccCeeEEEEcCCCC---EEEEEeCCC
Q 001248 851 --TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALN---VLVSSGADS 924 (1114)
Q Consensus 851 --~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~---~l~s~s~D~ 924 (1114)
.........+.+..+...+ +...++.-..+|.+..++...... +..|..- ..-..++...+.. .++.-+..|
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~-c~~~~~~~~~~~~~~~~~~GLs~~~ 601 (928)
T PF04762_consen 524 SASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQP-CPWMEVCQINGSEDKRVLFGLSSNG 601 (928)
T ss_pred ceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCC-CcEEEEEEECCccceeEEEEECCCC
Confidence 2222232344555555555 444567777899998766554322 1223221 1222233333332 444444445
Q ss_pred cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCC-CceeeeeecCC----CCcCe
Q 001248 925 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK-LECVKQWVPRE----SSAPI 998 (1114)
Q Consensus 925 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~-~~~~~~~~~~~----h~~~v 998 (1114)
.+.+ ++ . .+. ..+++.++ .+.+|+. .....++..++.. .+...... .. +...+
T Consensus 602 ~Ly~---n~-~-----~la---------~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~~ 660 (928)
T PF04762_consen 602 RLYA---NS-R-----LLA---------SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDERC 660 (928)
T ss_pred EEEE---CC-E-----EEe---------cCCceEEE--EcCEEEEEecCceEEEEECcCchhhccccc-Ccccccccccc
Confidence 4443 21 0 010 23455555 3445544 6777788888871 11111110 00 01112
Q ss_pred eEEEECCCCCEEEEEEcCCeEEEEEcCCCeee
Q 001248 999 THATFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 999 ~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
.. -.-|..|+++-....=.|..+..|.+-
T Consensus 661 R~---VERGsriVt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 661 RR---VERGSRIVTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred cc---CccCCEEEEEeCCCceEEEEcCCCchh
Confidence 22 236777777765555566788777654
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.5e-11 Score=137.94 Aligned_cols=222 Identities=13% Similarity=0.100 Sum_probs=136.7
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEec--CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~--dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....|...+.+++|||||++|+++... +..|++||+.+++... +..+.+...+++|||
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPSFSP 257 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCceECC
Confidence 444577889999999999974444322 3469999998876543 223334456789999
Q ss_pred CCCeEEEE-eCCC--eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCC--EEEEeCCCCcceeEe
Q 001248 431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIF 505 (1114)
Q Consensus 431 dg~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~ 505 (1114)
||+.|+.. +.+| .|.+||+.+++.. .+..|......++|+|||+. ++++...++. |.++|+.+++. ..+
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~-l~f~sd~~g~~~iy~~dl~~g~~-~~l 331 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS-IYFTSDRGGRPQIYRVAASGGSA-ERL 331 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCe-EEe
Confidence 99988644 4555 5999999887643 35556656678999999995 2333434454 67777766654 333
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCC---eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
..+.......+|+ ++|++++..+.++ .|.+||+.++... .+. +........|+|||
T Consensus 332 t~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG----------------- 390 (433)
T PRK04922 332 TFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNG----------------- 390 (433)
T ss_pred ecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCC-----------------
Confidence 3233344456765 4557777655433 5889998765433 221 11122333445544
Q ss_pred cCCCCEEEEEeC---CCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 583 DTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 583 ~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
++++..+. .+.|++++... .....+..+. ..+...+|+|
T Consensus 391 ----~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 391 ----SMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred ----CEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 45555443 34688888754 4445554332 2456677776
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=3.7e-10 Score=120.42 Aligned_cols=348 Identities=11% Similarity=0.146 Sum_probs=204.9
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
...++..++|++|+ ++|.+ .+..|.|++..+++.+... ....+.++.|||-|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEEe---------------------ccceeeeeeeccccccccc
Confidence 34478889999999 36654 5789999999988643321 1116899999999999987
Q ss_pred E-----eCC-----CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeec
Q 001248 438 A-----YSR-----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507 (1114)
Q Consensus 438 ~-----~~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 507 (1114)
= ..+ -.+.+|+++++.... .+..-...-++..|+.|.. ++.--..+.+.+|++.+-+.+. -.-
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl 163 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKL 163 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eee
Confidence 1 122 347899999943222 2222122226999999987 4444445689999987643322 122
Q ss_pred cccCEEEEeeccCCCceEEEE-----EecCCeEEEEEcCCCCCeeeecC---CCCeeEEEEEecCCCeEEeeecccceeE
Q 001248 508 HEAPVYSVCPHHKENIQFIFS-----TALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGV 579 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s-----~~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~g~~~~~~~~~~~v~~ 579 (1114)
|...|..+.+++.+.-..+++ .|.-+.+++|.+.....-..+.. -...-..+.|.+-|.-++. +..
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLv------Las 237 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLV------LAS 237 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEE------EEE
Confidence 677888888888765455554 34556799997752211110000 0011123344444432110 000
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEe--CCCcEEEEEccCCccceeec
Q 001248 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 580 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--~dg~i~iwd~~~~~~~~~~~ 657 (1114)
..++..+ .+-..+.++++.++........+.. .++|.++.|+++|+-+++.. .--.+.|+|++..
T Consensus 238 tdVDktn---~SYYGEq~Lyll~t~g~s~~V~L~k---~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------- 304 (566)
T KOG2315|consen 238 TDVDKTN---ASYYGEQTLYLLATQGESVSVPLLK---EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------- 304 (566)
T ss_pred EeecCCC---ccccccceEEEEEecCceEEEecCC---CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-------
Confidence 0011100 0111245677777764444444432 24688888888887665532 2223333332111
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCC
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1114)
T Consensus 305 -------------------------------------------------------------------------------- 304 (566)
T KOG2315|consen 305 -------------------------------------------------------------------------------- 304 (566)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCC
Q 001248 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP 817 (1114)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~ 817 (1114)
-|+|+ .
T Consensus 305 --------------------------------------~v~df------------------------------------~ 310 (566)
T KOG2315|consen 305 --------------------------------------PVFDF------------------------------------P 310 (566)
T ss_pred --------------------------------------EeEeC------------------------------------C
Confidence 00111 2
Q ss_pred CCCccEEEEeeCCCEEEEEe-C---CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe------CCCcEEEE
Q 001248 818 EEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM------DDSSIQIY 887 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~------~dg~v~iw 887 (1114)
.++-.++-|+|.|++|+.++ + |.|.|||+.+.+++..+... ..+-+.|+| ||.++++++ .|..++||
T Consensus 311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcC-CCcEEEEEeccccEEecCCeEEE
Confidence 34445677888888888776 3 88999999998888777643 457789999 899998886 36789999
Q ss_pred EcccceEEEeecccccCeeEEEEcCC
Q 001248 888 NVRVDEVKSKLKGHSKRITGLAFSHA 913 (1114)
Q Consensus 888 d~~~~~~~~~l~~h~~~V~~l~~s~d 913 (1114)
++. |..+..-.- ..+...+.|-|-
T Consensus 388 hyt-G~~l~~~~f-~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 388 HYT-GSLLHEKMF-KSELLQVEWRPF 411 (566)
T ss_pred Eec-Cceeehhhh-hHhHhheeeeec
Confidence 975 444433221 115777888754
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.8e-11 Score=137.06 Aligned_cols=222 Identities=15% Similarity=0.132 Sum_probs=133.5
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecC--CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~d--g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....+...+.+.+|||||++|+++...+ ..|++||+.+++... +....+.+.+.+|||
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP 249 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWSP 249 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECC
Confidence 4456788899999999999854444333 359999999886543 222334567899999
Q ss_pred CCCeEEE-EeCCCeEEEEEcc--CCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeC--CCCcceeEe
Q 001248 431 DGSLFGV-AYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA--TNGAKQYIF 505 (1114)
Q Consensus 431 dg~~las-~~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~--~~~~~~~~~ 505 (1114)
||+.|+. .+.++...||.++ ++. .. .+..|...+....|+|||+.+ ++++..++...+|.+ .+++. ..+
T Consensus 250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~l-~f~s~~~g~~~Iy~~~~~~g~~-~~l 323 (427)
T PRK02889 250 DGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRSI-YFTSDRGGAPQIYRMPASGGAA-QRV 323 (427)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCEE-EEEecCCCCcEEEEEECCCCce-EEE
Confidence 9998875 5677776776554 443 33 355566666788999999962 334444566666654 44442 333
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCC---eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
..+.......+|+ ++|++++..+.++ .|.+||+.+++.... .. ........|+|||
T Consensus 324 t~~g~~~~~~~~S--pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg----------------- 382 (427)
T PRK02889 324 TFTGSYNTSPRIS--PDGKLLAYISRVGGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNG----------------- 382 (427)
T ss_pred ecCCCCcCceEEC--CCCCEEEEEEccCCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCC-----------------
Confidence 2222333345654 5667887776554 689999877543322 11 1122334455554
Q ss_pred cCCCCEEEEEeCCC---eEEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 583 DTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 583 ~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
+.++..+.++ .+++.+. ++.....+..+. ..+...+|+|
T Consensus 383 ----~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~--g~~~~p~wsp 424 (427)
T PRK02889 383 ----RYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG--GDVREPSWGP 424 (427)
T ss_pred ----CEEEEEEecCCCEEEEEEEC-CCCceEEeecCC--CCCCCCccCC
Confidence 4555554322 3555566 455555554332 2466677876
No 240
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.4e-10 Score=133.32 Aligned_cols=216 Identities=13% Similarity=0.079 Sum_probs=140.0
Q ss_pred CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC---CCeEEEEEccCCceeee
Q 001248 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ 457 (1114)
Q Consensus 381 g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---dg~i~iwd~~~~~~~~~ 457 (1114)
..|.+||....... .+..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 37888888654432 25667889999999999999998764 467999999988643
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCCC--EEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-CC-
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG- 533 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~- 533 (1114)
.+..+.+.+.+.+|+|||+. ++++.+.++. |.+||+.++.. ..+..+.......+|++ ||+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP--DGSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC--CCCEEEEEECCCCC
Confidence 34556677889999999996 3456665555 77889887764 55665666666677754 5577776653 33
Q ss_pred -eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC---CeEEEEECCCcceE
Q 001248 534 -KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 609 (1114)
Q Consensus 534 -~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 609 (1114)
.|.+||+...... .+......+.... |+|+|+.++..+.+ ..|.+||..++..
T Consensus 314 ~~Iy~~d~~g~~~~-~lt~~~~~~~~~~---------------------~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~- 370 (435)
T PRK05137 314 PQLYVMNADGSNPR-RISFGGGRYSTPV---------------------WSPRGDLIAFTKQGGGQFSIGVMKPDGSGE- 370 (435)
T ss_pred CeEEEEECCCCCeE-EeecCCCcccCeE---------------------ECCCCCEEEEEEcCCCceEEEEEECCCCce-
Confidence 5777776543322 2221122223334 55555566554432 4688889865543
Q ss_pred EEeccCCCCCCcCeEEEcCCCCEEEEEeCC------CcEEEEEccCC
Q 001248 610 TSIDADGGLPASPRIRFNKDGCLLAVSTND------NGIKILATSDG 650 (1114)
Q Consensus 610 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d------g~i~iwd~~~~ 650 (1114)
..+... ..+....|+|||+.|+..+.+ ..+.++++..+
T Consensus 371 ~~lt~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 371 RILTSG---FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EeccCC---CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 333322 136788999999998876543 24667776554
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=7e-11 Score=135.71 Aligned_cols=221 Identities=11% Similarity=0.055 Sum_probs=138.3
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEec--CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~--dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....|...+.+.+|||||++|+++... +..|++||+.+++... +..+.+.+.+.+|||
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP 255 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAPRFSP 255 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCcEECC
Confidence 444588899999999999985554332 4689999999886542 344556778899999
Q ss_pred CCCeEEE-EeCCCe--EEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC--CEEEEeCCCCcceeEe
Q 001248 431 DGSLFGV-AYSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIF 505 (1114)
Q Consensus 431 dg~~las-~~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~ 505 (1114)
||+.|+. .+.++. |.+||+.+++.. .+..+........|+|||+.++ ++...++ .|++||+..++. ..+
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~i~-f~s~~~g~~~Iy~~d~~g~~~-~~l 329 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQIV-FESDRSGSPQLYVMNADGSNP-RRI 329 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCEEE-EEECCCCCCeEEEEECCCCCe-EEe
Confidence 9998864 445554 777788877643 3556666778899999999632 2332333 588889776554 444
Q ss_pred eccccCEEEEeeccCCCceEEEEEecC---CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
..+...+....|++ +|+.|+..+.+ ..|.+||+..... ..+. ....+....|+|||
T Consensus 330 t~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG----------------- 388 (435)
T PRK05137 330 SFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNG----------------- 388 (435)
T ss_pred ecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCC-----------------
Confidence 44455566667654 55777766543 3577788754332 2221 11223444555555
Q ss_pred cCCCCEEEEEeCC------CeEEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 583 DTTKNRFLAAGDD------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 583 ~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
+.++..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 389 ----~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 389 ----RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred ----CEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 455543321 3688888866544 3443222 356667776
No 242
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.39 E-value=5.6e-09 Score=108.61 Aligned_cols=171 Identities=15% Similarity=0.154 Sum_probs=133.5
Q ss_pred CCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC-cEEEEEcccceEEEeecccccCeeE
Q 001248 829 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITG 907 (1114)
Q Consensus 829 d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1114)
+|.+++..+-|+..|.+...+-.++ -++...|.-..+.- +++-++.|..|| .+-|||..+++ +..+...-+.|.+
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEE--cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence 7889999999998888876554433 23566788888887 677889999999 99999999876 4556667788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eC----CeEEEEEcCC
Q 001248 908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----TQLAIFETTK 982 (1114)
Q Consensus 908 l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d----~~i~iwd~~~ 982 (1114)
+..++||++++.+.....+.+.|++++.... +... ..+-|+.+.|+|+++++|.+ -+ ..|++||+.+
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~---idkS-----~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKS-----EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeE---eccc-----ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 9999999999999888899999999976422 1111 12478999999999999996 33 4799999999
Q ss_pred CceeeeeecCCCCcCeeEEEECCCCCEEEEEE
Q 001248 983 LECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s 1014 (1114)
++........+| =.+-+|.||+++|..-+
T Consensus 479 ~Kiy~vTT~ta~---DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTTPTAY---DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeEEEecCCccc---ccCcccCCCCcEEEEEe
Confidence 988776554333 35668999999987554
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=3.1e-11 Score=120.18 Aligned_cols=155 Identities=11% Similarity=0.174 Sum_probs=108.6
Q ss_pred EEEEEecCCCcEEEEEeC----------CCcEEEEEccc-ceEEEeecc-cccCeeEEEEcCCCCEEEEE--eCCCcEEE
Q 001248 863 TFLAFHPQDNNIIAIGMD----------DSSIQIYNVRV-DEVKSKLKG-HSKRITGLAFSHALNVLVSS--GADSQLCV 928 (1114)
Q Consensus 863 ~~l~~sp~d~~~la~g~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~--s~D~~v~i 928 (1114)
..+.|+| .|+.|++-.. -|...+|.+.. +.....+.- ..++|.+++|+|+|+.+|.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577888 6665554332 12355555532 223333332 34579999999999987654 45789999
Q ss_pred EeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe----CCeEEEEEcCCCceeeeeecCCCCcCeeEEEEC
Q 001248 929 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLECVKQWVPRESSAPITHATFS 1004 (1114)
Q Consensus 929 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s 1004 (1114)
||++.. .+..+.. ..+..+.|+|+|++|++++ .|.|.+||..+.+.+.... ...++.++||
T Consensus 88 yd~~~~------~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws 152 (194)
T PF08662_consen 88 YDVKGK------KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS 152 (194)
T ss_pred EcCccc------EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence 999731 1122221 2567899999999999953 4679999999888887754 3357899999
Q ss_pred CCCCEEEEEEc------CCeEEEEEcCCCeeeEEeC
Q 001248 1005 CDSQLVYACFL------DATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 1005 ~dg~~l~s~s~------Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
|||++|+++.. |..++||++. |+++.+..
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 99999998874 7889999985 77776544
No 244
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.38 E-value=1.5e-09 Score=107.74 Aligned_cols=237 Identities=15% Similarity=0.215 Sum_probs=157.7
Q ss_pred ceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE-Ee
Q 001248 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-AY 439 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~~ 439 (1114)
...++|+.|..- +++|. |.-.+||+++--+...++.+ ..-.-.+..|-| -.++||. ||
T Consensus 8 ~lsvs~NQD~Sc-Fava~-~~Gfriyn~~P~ke~~~r~~-----------------~~~G~~~veMLf--R~N~laLVGG 66 (346)
T KOG2111|consen 8 TLSVSFNQDHSC-FAVAT-DTGFRIYNCDPFKESASRQF-----------------IDGGFKIVEMLF--RSNYLALVGG 66 (346)
T ss_pred eeEEEEccCCce-EEEEe-cCceEEEecCchhhhhhhcc-----------------ccCchhhhhHhh--hhceEEEecC
Confidence 345999999984 66655 66689999875333221111 000112222222 2344443 33
Q ss_pred CC------CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC-CCcceeEeeccc--c
Q 001248 440 SR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHE--A 510 (1114)
Q Consensus 440 ~d------g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~h~--~ 510 (1114)
.+ ..|.|||=...+++. ++ .-..+|.+|.+.++- ++..- .+.|+||... +.+.++.+.... .
T Consensus 67 g~~pky~pNkviIWDD~k~~~i~---el-~f~~~I~~V~l~r~r----iVvvl-~~~I~VytF~~n~k~l~~~et~~NPk 137 (346)
T KOG2111|consen 67 GSRPKYPPNKVIIWDDLKERCII---EL-SFNSEIKAVKLRRDR----IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK 137 (346)
T ss_pred CCCCCCCCceEEEEecccCcEEE---EE-EeccceeeEEEcCCe----EEEEe-cCeEEEEEcCCChhheeeeecccCCC
Confidence 22 469999944444443 33 245689999998763 33332 5789999987 566676665433 2
Q ss_pred CEEEEeeccCCCceEEEEEe-cCCeEEEEEcCCCCC--eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 511 PVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
...+++ +..+..+|+.-| .-|.|++-|+..... ...+.+|...|.+++++.+|.
T Consensus 138 GlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--------------------- 194 (346)
T KOG2111|consen 138 GLCSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT--------------------- 194 (346)
T ss_pred ceEeec--CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc---------------------
Confidence 244443 444445555544 468899999876554 355666666666666555554
Q ss_pred EEEEEeCCCe-EEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 588 RFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 588 ~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.+++++..|+ |||||..+|..+..+........|.+++|||++.+|+++|+.|++.|+.++..
T Consensus 195 ~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 195 LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 7999998887 79999999999999986666678999999999999999999999999998764
No 245
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.38 E-value=3.6e-11 Score=119.90 Aligned_cols=326 Identities=15% Similarity=0.257 Sum_probs=200.7
Q ss_pred CCCCEEEEEeCCCeEEEEE-CCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccccc
Q 001248 584 TTKNRFLAAGDDFSIKFWD-MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY 662 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1114)
|..+-+++.++|.++++|- .+.++.-..+. +.....++++.+.++...|++|-..|++.-+.+..........
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~----- 107 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFL----- 107 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchh-----
Confidence 3344599999999999996 44454443333 2224568899999999999999999998877654321111100
Q ss_pred ccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccc
Q 001248 663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 742 (1114)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 742 (1114)
+.|
T Consensus 108 ----------------------------------------------------------------r~~------------- 110 (404)
T KOG1409|consen 108 ----------------------------------------------------------------KDY------------- 110 (404)
T ss_pred ----------------------------------------------------------------hhh-------------
Confidence 000
Q ss_pred cccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCcc
Q 001248 743 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 822 (1114)
Q Consensus 743 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~ 822 (1114)
..|...+..+.|+-....+++.+.|..+. |..... |..+.... .....+
T Consensus 111 -----~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~---------------------~~~lg~Y~----~~~~~t 159 (404)
T KOG1409|consen 111 -----LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTES---------------------GNRLGGYN----FETPAS 159 (404)
T ss_pred -----hhhhcceeeEEecCCceeEEEeccccceE-EEeecc---------------------CCcccceE----eeccCC
Confidence 12778899999999999999999886553 432211 11110000 011111
Q ss_pred EEEEeeCCCEEEEEe-CCeEEEEEc--CCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce-EEEee
Q 001248 823 CFALSKNDSYVMSAS-GGKISLFNM--MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKL 898 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~-dg~i~iwd~--~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~-~~~~l 898 (1114)
++.+.-. +...|. .|.|..-.+ .....+.++.+|...+++++|.+ ...+|.+|..|..|.+||+.-.+ ....+
T Consensus 160 ~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el 236 (404)
T KOG1409|consen 160 ALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYEL 236 (404)
T ss_pred CCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeee
Confidence 1111111 333444 455444333 45667788999999999999999 88999999999999999997654 34678
Q ss_pred cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccc-------------------------cCCCCCCCC-
Q 001248 899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ-------------------------IPTGRTPTA- 952 (1114)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-------------------------~~~~~~~~~- 952 (1114)
.+|.+.|..+...+--+.|+|++.||.|.+|+++.........+. ....|-..-
T Consensus 237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg 316 (404)
T KOG1409|consen 237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCG 316 (404)
T ss_pred ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 999999999999888899999999999999999864332211000 000000000
Q ss_pred CCceEEEEccCCcEEEEEeCCeEEEEEcCC-----CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 953 QSDTRVQFHQDQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 953 ~~i~~v~fspdg~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
..+...+-+.-..+...+..-.+++-|.-- .+.......+.-...|+.+.+..+-.+|++++.|+.|+|||+..
T Consensus 317 ~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 317 KAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 011111111122222223344455544221 11100111111144799999998989999999999999999764
No 246
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=9.5e-11 Score=116.74 Aligned_cols=183 Identities=17% Similarity=0.281 Sum_probs=124.1
Q ss_pred cCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc-----ceeEeeccc------------cCEEEEeeccCCCceEEE
Q 001248 465 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHE------------APVYSVCPHHKENIQFIF 527 (1114)
Q Consensus 465 ~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~ 527 (1114)
..-|.+|.|...|. +|+||..+|.|.++.-.... ....++.|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 45689999999999 89999999999999744322 223444443 457788888888888888
Q ss_pred EEecCCeEEEEEcCCCCCee-----eecCCCCeeEEEEEec----------CCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 528 STALDGKIKAWLYDNLGSRV-----DYEAPGRWCTTMAYSA----------DGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 528 s~~~d~~i~~wd~~~~~~~~-----~~~~~~~~v~~~~~s~----------~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
..+.|++|++|.+....... ........+.++.... .-++++...+...+..+.++.|+..++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 89999999999887544332 0111122233332211 11356666677788999999999988775
Q ss_pred eCCCeEEEEECCCcceE-EE--eccCC---CCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCC
Q 001248 593 GDDFSIKFWDMDSVQLL-TS--IDADG---GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~-~~--~~~~~---~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.|=.|.+|++.--..- .. ++.+. -..-|++..|+| ..+.++..+..|+|++.|++..
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 4678999997643211 11 11111 113478889999 4677888888999999998755
No 247
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.4e-10 Score=133.03 Aligned_cols=215 Identities=12% Similarity=0.141 Sum_probs=136.7
Q ss_pred CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeee
Q 001248 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQ 457 (1114)
Q Consensus 381 g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~ 457 (1114)
.+|.+||...+... .+..|...+.+.+|||||+.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 46889998654332 245567789999999999999988643 469999998876432
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCC--CEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-CCe
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK 534 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~ 534 (1114)
+..+.+...+++|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+ +||+.|+..+. ++.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence 3344455668999999996 334545554 599999988764 4555565555666765 45577776653 444
Q ss_pred --EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC---CeEEEEECCCcceE
Q 001248 535 --IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL 609 (1114)
Q Consensus 535 --i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 609 (1114)
|.++|+.+++.. .+......... .+|+|+|++++..+.+ ..|.+||+.+++..
T Consensus 316 ~~iy~~dl~~g~~~-~lt~~g~~~~~---------------------~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 316 PQIYRVAASGGSAE-RLTFQGNYNAR---------------------ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccC---------------------EEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 555555443321 11111111223 4455555566665433 26999999887755
Q ss_pred EEeccCCCCCCcCeEEEcCCCCEEEEEeCC---CcEEEEEccC
Q 001248 610 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSD 649 (1114)
Q Consensus 610 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d---g~i~iwd~~~ 649 (1114)
.+... . ......|+|||++++..+.+ +.|.+++...
T Consensus 374 -~Lt~~-~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 374 -TLTPG-S--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -ECCCC-C--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 33322 1 24567999999988877653 3466666643
No 248
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1.7e-10 Score=131.72 Aligned_cols=192 Identities=13% Similarity=0.123 Sum_probs=122.5
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEE
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~ 492 (1114)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999987643 459999999886542 3334455678999999995 344667777766
Q ss_pred EEe--CCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-CCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeE
Q 001248 493 VWD--ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 493 iwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
||. +..+. ...+..+........|++ ||+.|+..+. ++...+|.++... ....+........
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~----------- 331 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNT----------- 331 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcC-----------
Confidence 665 44443 556665655566667654 5566665554 5666777654221 1111111111111
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCC---eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCC
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 640 (1114)
...|+|+|++++..+.++ .|.+||+.+++...... .. ......|+|||+.|+..+.++
T Consensus 332 ----------~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~---~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 332 ----------SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-TT---RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ----------ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-CC---CccCceECCCCCEEEEEEecC
Confidence 235666666777665443 69999998887543322 21 236789999999988877654
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.37 E-value=1.8e-09 Score=115.32 Aligned_cols=204 Identities=12% Similarity=0.104 Sum_probs=124.8
Q ss_pred EEEEeeCCCEEEEEe---CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceEE---
Q 001248 823 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK--- 895 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-~~~~--- 895 (1114)
.++++|||++|.+.. ++.|.+.|+.+++.+.++.... ...-...+. +..+ +-+.||......+.+ |+..
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE--EEeecCceEEEEecCCCceEEee
Confidence 456777777777654 4678888888877777665422 122222222 2211 112344433333222 1111
Q ss_pred -EeecccccCeeE-EEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCC----CCCCCCceEEEEccCCcEEE
Q 001248 896 -SKLKGHSKRITG-LAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR----TPTAQSDTRVQFHQDQIHFL 968 (1114)
Q Consensus 896 -~~l~~h~~~V~~-l~~s~-d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~~i~~v~fspdg~~l~ 968 (1114)
..+.+-..++.. -.|++ ||+++..... |+|.+-|+...+............. ...++....+++++||+.+.
T Consensus 185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 111110111100 04455 8888777666 9999999765443332222222111 11224555699999999998
Q ss_pred EEe---C--------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCCeeeEEeC
Q 001248 969 VVH---E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 969 ~~~---d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.. . +.|.++|..+++.+..+.. ...+..++++||++ +|++.+ .++.|.|+|..+++.+.++.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 832 1 4799999999999998875 45899999999999 887776 57889999999999998873
No 250
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.37 E-value=6.5e-10 Score=116.97 Aligned_cols=362 Identities=14% Similarity=0.201 Sum_probs=227.5
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC-------
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD------- 488 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d------- 488 (1114)
+....-++..++|||.|++|++....+ |.+|+...+..+. .+ .| ..|..+.|||.++ +|+|=+..
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~---~~-~~-~~V~~~~fSP~~k--YL~tw~~~pi~~pe~ 99 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLV---RF-RH-PDVKYLDFSPNEK--YLVTWSREPIIEPEI 99 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhhee---ee-ec-CCceecccCcccc--eeeeeccCCccChhh
Confidence 333556899999999999999987766 9999988766443 22 23 3699999999999 78876543
Q ss_pred --------CCEEEEeCCCCcceeEeeccccC--EE-EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee-cCCCCee
Q 001248 489 --------KTIKVWDATNGAKQYIFEGHEAP--VY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWC 556 (1114)
Q Consensus 489 --------~~i~iwd~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v 556 (1114)
..+.+||+.+|..+..+.+...+ .+ -+.|+.+. .+++-. ....+.++++...-....+ ......+
T Consensus 100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi 176 (561)
T COG5354 100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD--KYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGI 176 (561)
T ss_pred ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc--hhhhhh-ccCeEEEEecCCccccCchhhccccce
Confidence 35999999999999988876655 44 34555443 455444 3456888986221111111 1123457
Q ss_pred EEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEE
Q 001248 557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 636 (1114)
Q Consensus 557 ~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 636 (1114)
....++|.+.. .. .+.|.|.. .+..+.+++|.+..+..+.+-....- .-..+.|.+.|++|++-
T Consensus 177 ~dFsisP~~n~--------~~-la~~tPEk-----~~kpa~~~i~sIp~~s~l~tk~lfk~--~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 177 LDFSISPEGNH--------DE-LAYWTPEK-----LNKPAMVRILSIPKNSVLVTKNLFKV--SGVQLKWQVLGKYLLVL 240 (561)
T ss_pred eeEEecCCCCC--------ce-EEEEcccc-----CCCCcEEEEEEccCCCeeeeeeeEee--cccEEEEecCCceEEEE
Confidence 77778877531 11 22233321 45788999999987766655433211 12468888988887653
Q ss_pred eCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcc
Q 001248 637 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP 716 (1114)
Q Consensus 637 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1114)
..- +..+++...
T Consensus 241 ~~t------~~ksnKsyf-------------------------------------------------------------- 252 (561)
T COG5354 241 VMT------HTKSNKSYF-------------------------------------------------------------- 252 (561)
T ss_pred EEE------eeeccccee--------------------------------------------------------------
Confidence 211 111111000
Q ss_pred cccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecc--cCceEEEEeecccccCCCCCcccc
Q 001248 717 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATAS 794 (1114)
Q Consensus 717 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~ 794 (1114)
....+.++++.....+... .-.+.|...+|.|.++.+++.+ ....+.++++...
T Consensus 253 -----gesnLyl~~~~e~~i~V~~--------~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N----------- 308 (561)
T COG5354 253 -----GESNLYLLRITERSIPVEK--------DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN----------- 308 (561)
T ss_pred -----ccceEEEEeecccccceec--------cccccceeeeecccCCceeEEecccccceeecccccc-----------
Confidence 0123444444422111111 1457899999999998877655 4566777665421
Q ss_pred ccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-C---CeEEEEEcCCCcccc-ccCCCCCCeEEEEEec
Q 001248 795 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMA-TFMPPPPAATFLAFHP 869 (1114)
Q Consensus 795 ~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-d---g~i~iwd~~~~~~~~-~~~~~~~~i~~l~~sp 869 (1114)
+... .....-..+.|+|.+++++.++ | |.+.+||..+.-.+. .+.+ ...+-+.|+|
T Consensus 309 ------------l~~~-----~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wsp 369 (561)
T COG5354 309 ------------LRFY-----FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSP 369 (561)
T ss_pred ------------eEEe-----cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccC
Confidence 1111 1334445678999999999877 5 779999987644433 4443 3356678999
Q ss_pred CCCcEEEEEe------CCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC
Q 001248 870 QDNNIIAIGM------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 924 (1114)
Q Consensus 870 ~d~~~la~g~------~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~ 924 (1114)
|+.++.+.. .|..|.|||+...... ..+.+.|-|.+++.-+.+.+.
T Consensus 370 -d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 370 -DGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -CceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 898887764 4678999998654321 567788988888776666554
No 251
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1.2e-09 Score=118.86 Aligned_cols=476 Identities=13% Similarity=0.122 Sum_probs=270.3
Q ss_pred cCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc---------------ceeEeeccccCEEEEeeccCCCceEEEEE
Q 001248 465 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---------------KQYIFEGHEAPVYSVCPHHKENIQFIFST 529 (1114)
Q Consensus 465 ~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 529 (1114)
.....|++|..... +++.||.||.++|-.+.+.. .-+++.||.+.|.-+.|+... +.|-+.
T Consensus 14 nvkL~c~~WNke~g--yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~--QKLTtS 89 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESG--YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN--QKLTTS 89 (1189)
T ss_pred CceEEEEEEcccCC--eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc--cccccc
Confidence 34578999999988 89999999999999876431 124678999999999986543 688899
Q ss_pred ecCCeEEEEEcCCCCCeeee--cCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc
Q 001248 530 ALDGKIKAWLYDNLGSRVDY--EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607 (1114)
Q Consensus 530 ~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 607 (1114)
..+|.|.+|-+-.+.-.... ......|.+++|..||. .+....+||.|.+=.++..+
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---------------------kIcIvYeDGavIVGsvdGNR 148 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---------------------KICIVYEDGAVIVGSVDGNR 148 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---------------------EEEEEEccCCEEEEeeccce
Confidence 99999999987654432221 11233456666666665 44444455544443332211
Q ss_pred eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccc-cccccccCCCCCCCCccchhhhhhhhc
Q 001248 608 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN-LAYDASRTSENSKPTISPISAAAAAAA 686 (1114)
Q Consensus 608 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1114)
+.--...+ .....+.|++|.+.+..+-..|.+.++|........-.... -+... .|+
T Consensus 149 -IwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg---------~~s---------- 206 (1189)
T KOG2041|consen 149 -IWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTG---------IFS---------- 206 (1189)
T ss_pred -ecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeee---------eec----------
Confidence 11111111 12456899999999999999999999997654221111100 00000 011
Q ss_pred cccccccccccccccCCCCCC-ccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcce
Q 001248 687 TSAGLADRAASMVSIPGMNGD-VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 765 (1114)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~ 765 (1114)
.+...+.....+.+. ....|+...++.+-..|.+.+-.-.+...+.... ..-.+..+.|+++|..
T Consensus 207 ------~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--------tgm~~vgakWnh~G~v 272 (1189)
T KOG2041|consen 207 ------NFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--------TGMKIVGAKWNHNGAV 272 (1189)
T ss_pred ------CCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--------cccEeecceecCCCcE
Confidence 011111112222222 2334577888888888888887766544443332 2357889999999999
Q ss_pred eeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEE
Q 001248 766 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 845 (1114)
Q Consensus 766 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd 845 (1114)
|++++.+..-.- ...+..++++.+-....-. ++. ....|++++|-..|-.+|.+-|+.|.+=+
T Consensus 273 LAvcG~~~da~~-------------~~d~n~v~Fysp~G~i~gt--lkv--pg~~It~lsWEg~gLriA~Avdsfiyfan 335 (1189)
T KOG2041|consen 273 LAVCGNDSDADE-------------PTDSNKVHFYSPYGHIVGT--LKV--PGSCITGLSWEGTGLRIAIAVDSFIYFAN 335 (1189)
T ss_pred EEEccCcccccC-------------ccccceEEEeccchhheEE--Eec--CCceeeeeEEcCCceEEEEEecceEEEEe
Confidence 998887632100 0001122333332211111 111 56789999999999999999999998877
Q ss_pred cCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCc
Q 001248 846 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 925 (1114)
Q Consensus 846 ~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~ 925 (1114)
+.-.-. .-.....|.-+---+ +. -.-.|.+||..+.+...+-..| ..+++|+.+.-.|+.-..|+.
T Consensus 336 IRP~yk---Wgy~e~TvVy~y~~~-e~-------p~y~i~Fwdtk~nek~vK~V~~---~~~~a~~~ehCvL~~~~d~~~ 401 (1189)
T KOG2041|consen 336 IRPEYK---WGYIEETVVYVYQKE-EL-------PQYGIMFWDTKTNEKTVKTVTH---FENMAFYREHCVLINRQDDGV 401 (1189)
T ss_pred ecccce---EEEeeeEEEEEEccC-CC-------cceEEEEEecccChhhhhhhcc---eeehheecccEEEEeccccCC
Confidence 753110 000011111110001 10 1124788998886543222223 346788888778888888887
Q ss_pred EEEEeC-CCCccccccccccCCCCCCC--CCCceEEEEccCCcEEEEEeCCeEEEEEcCCCcee----------------
Q 001248 926 LCVWSS-DGWEKQKNRFLQIPTGRTPT--AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV---------------- 986 (1114)
Q Consensus 926 v~iwd~-~~~~~~~~~~~~~~~~~~~~--~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~---------------- 986 (1114)
+.-++. ++....-...+...-|.... ...|.-.-..-+|.+++.++...+.+|.....+..
T Consensus 402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~ 481 (1189)
T KOG2041|consen 402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHG 481 (1189)
T ss_pred CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccC
Confidence 776632 11111000001111111000 01222223334677777788888888875332211
Q ss_pred ---------eeee-----cCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 987 ---------KQWV-----PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 987 ---------~~~~-----~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.+. ..|..++|.+++.| .++|..+-..|.|.-|.+.+.-+..+..
T Consensus 482 Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~ 541 (1189)
T KOG2041|consen 482 DDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP 541 (1189)
T ss_pred CCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc
Confidence 0011 11335677777764 5688889899999999999887765543
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=3.4e-09 Score=108.00 Aligned_cols=282 Identities=9% Similarity=0.091 Sum_probs=183.5
Q ss_pred CCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccC---ceEEEEeecccccCCCCCccccccccc
Q 001248 723 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQL 799 (1114)
Q Consensus 723 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~ 799 (1114)
+..|.+|++.+.........+ .......+-++++|+.+.|.++..+ |.|..|.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD------------------ 72 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID------------------ 72 (346)
T ss_pred CCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc------------------
Confidence 578999999843322111111 2256778899999999988877664 566666543
Q ss_pred cCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCC-Cccccc--cCCCCCC----------eEE
Q 001248 800 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT--FMPPPPA----------ATF 864 (1114)
Q Consensus 800 w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~ 864 (1114)
..+|.+...-... ....+.+.++++++|++++++. .|.|.++-+.. |..... +..|.+. +..
T Consensus 73 --~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 73 --PDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred --CCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 3334322110000 0233448899999999999998 69999999965 333221 1123322 788
Q ss_pred EEEecCCCcEEEEEe-CCCcEEEEEcccceEEEeec---ccccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCC--ccc
Q 001248 865 LAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGW--EKQ 937 (1114)
Q Consensus 865 l~~sp~d~~~la~g~-~dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~~--~~~ 937 (1114)
..|.| ++++|++.+ .--.|.+|++..|++...-. .-...-..|+|+|++++....+ -+++|.+|..+.. +..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 99999 888887765 23379999999876542211 1233457899999999987665 5899999999873 333
Q ss_pred cccccccCCCCCCCCCCceEEEEccCCcEEEEEe--CCeEEEEEcCCC--ceeeeeecCCCCcCeeEEEECCCCCEEEEE
Q 001248 938 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFETTKL--ECVKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 938 ~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~--d~~i~iwd~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1114)
....+...+...........+.+++||++|.++. ...|.+|.+... +....-....+........|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 3333333333344445668899999999999973 447888876543 222111122345568899999999999998
Q ss_pred EcCC-eEEEEEc--CCCeee
Q 001248 1014 FLDA-TVCVFSA--ANLKLR 1030 (1114)
Q Consensus 1014 s~Dg-~I~vwd~--~~~~~~ 1030 (1114)
+.++ .|.||.. .+|++-
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 8764 5888876 455554
No 253
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=7.8e-11 Score=119.79 Aligned_cols=256 Identities=12% Similarity=0.088 Sum_probs=176.9
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEe-cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGT-NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~-~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
+.....|+.++|--|++.=+..+. .+..+.....+....... +||+. ........|..++.. ..
T Consensus 52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg 116 (412)
T KOG3881|consen 52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DG 116 (412)
T ss_pred cchhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CC
Confidence 345677888888887765344444 566666666665544332 12222 234455677777765 34
Q ss_pred eEEEEeCCCeEEEEEccCCceee-eeEeeccccCCeeEEEecCCCCeeEEEEecCC--CCEEEEeCCCCcceeEeec---
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQYIFEG--- 507 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~--- 507 (1114)
.|++|-.+|.+.+|..+.+..-. ....+..+ ..+..|.-++...+ ++++||.. ..++|||++..+.+.+-+.
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn 194 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPN 194 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCC
Confidence 66777889999999998543110 11123223 56778888887776 67789988 8899999998866554321
Q ss_pred ----cc--cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe-eeecCCCCeeEEEEEecCCCeEEeeecccceeEE
Q 001248 508 ----HE--APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1114)
Q Consensus 508 ----h~--~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~ 580 (1114)
-. -+++++.|.+......+++++.-+.+++||.+..... ..+..... .+.++
T Consensus 195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~---------------------~is~~ 253 (412)
T KOG3881|consen 195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN---------------------PISST 253 (412)
T ss_pred ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC---------------------cceee
Confidence 11 2345566655534578999999999999999865432 23333333 44455
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcceEEE-eccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
...|.++++++|...+.+..||.+.++.... +.+. .+.++++..+|.+.++++++-|..+||+|+.+.
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred eecCCCcEEEEecccchhheecccCceeeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 5556666899999999999999999988777 5544 457999999999999999999999999999885
No 254
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.35 E-value=6.6e-07 Score=109.78 Aligned_cols=471 Identities=13% Similarity=0.121 Sum_probs=247.6
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEE----EccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY----SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~dg~i~iw----d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
...+.|.++.+-+|...|+.+..+|.|.+. +..+.. +. ....-...|.+++||||+.. |+..+.++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~El--la~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEEL--LALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcCE--EEEEeCCCEEEE
Confidence 345689999999999999999999999999 544432 22 23345678999999999994 554444666655
Q ss_pred Ee----CCC-------------------CcceeEeecc------------------------ccCEEEEeeccCCCceEE
Q 001248 494 WD----ATN-------------------GAKQYIFEGH------------------------EAPVYSVCPHHKENIQFI 526 (1114)
Q Consensus 494 wd----~~~-------------------~~~~~~~~~h------------------------~~~v~~~~~~~~~~~~~l 526 (1114)
-+ +-. |+.-..|+|- ...-..++ ..+||.++
T Consensus 147 mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~IS--WRGDG~yF 224 (928)
T PF04762_consen 147 MTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRIS--WRGDGEYF 224 (928)
T ss_pred EeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEE--ECCCCcEE
Confidence 43 100 1111112111 11122334 46778888
Q ss_pred EEEec---C---CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC---CCe
Q 001248 527 FSTAL---D---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFS 597 (1114)
Q Consensus 527 ~s~~~---d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~ 597 (1114)
++.+. . +.+++|+-+ +. +... ..++. +--..++|-|.|+++++... ...
T Consensus 225 AVss~~~~~~~~R~iRVy~Re-G~-L~st---SE~v~-----------------gLe~~l~WrPsG~lIA~~q~~~~~~~ 282 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSRE-GE-LQST---SEPVD-----------------GLEGALSWRPSGNLIASSQRLPDRHD 282 (928)
T ss_pred EEEEEEcCCCceeEEEEECCC-ce-EEec---cccCC-----------------CccCCccCCCCCCEEEEEEEcCCCcE
Confidence 88765 2 468888654 11 1111 11111 11224566677777777553 466
Q ss_pred EEEEECCCcceEEEeccC--CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCc
Q 001248 598 IKFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1114)
Q Consensus 598 i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1114)
|.+|.- +|..-..|... .....|..+.|++|+..|++...|. |.+|-..+-.-.++.--....... .
T Consensus 283 VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~------~--- 351 (928)
T PF04762_consen 283 VVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES------V--- 351 (928)
T ss_pred EEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC------C---
Confidence 777774 44444444332 2345689999999999999987655 999988776322221100000000 0
Q ss_pred cchhhhhhhhccccccccccccccccCCCCCCccccC-CCcccccccCCCceeEEEeccCCCCccccccccCccccccce
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA-DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1114)
......+ +...+.....++.+..++..-
T Consensus 352 ------------------------------~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~--------------------- 380 (928)
T PF04762_consen 352 ------------------------------NFVKWDPEKPLRLHVLTSNGQYEIYDFAW--------------------- 380 (928)
T ss_pred ------------------------------CceEECCCCCCEEEEEecCCcEEEEEEEE---------------------
Confidence 0000001 122233333334443333221
Q ss_pred EEEEEc----cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC
Q 001248 755 SRLIFT----NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1114)
Q Consensus 755 ~~l~~s----~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~ 830 (1114)
.+..+ |+..-.++.-+...+.+-.+......|. +-...+ .....|.+++|++++
T Consensus 381 -~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPP------------------Ms~~~l---~~~~~v~~vaf~~~~ 438 (928)
T PF04762_consen 381 -DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPP------------------MSSYEL---ELPSPVNDVAFSPSN 438 (928)
T ss_pred -EEEecCCCCccCceEEEEEeCCeEEEecccccCCCch------------------HhceEE---cCCCCcEEEEEeCCC
Confidence 11111 1111122222223333332221111000 000001 146789999999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCccc--------cccC----------CCCCCeEEEEEecCCCcEEEEEeCC---CcEEEEE
Q 001248 831 SYVMSAS-GGKISLFNMMTFKTM--------ATFM----------PPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYN 888 (1114)
Q Consensus 831 ~~l~~~~-dg~i~iwd~~~~~~~--------~~~~----------~~~~~i~~l~~sp~d~~~la~g~~d---g~v~iwd 888 (1114)
..+++-. ||.|.+|........ ..+. .....+..++|.. +..+++....+ ..+.+++
T Consensus 439 ~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~ 517 (928)
T PF04762_consen 439 SRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLN-DDTLLVLSDSDSNQSKIVLVD 517 (928)
T ss_pred CeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeC-CCEEEEEEecCcccceEEEEE
Confidence 8666665 999999985432211 1111 1234578888887 56666665554 5788888
Q ss_pred cccce---EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCc
Q 001248 889 VRVDE---VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 965 (1114)
Q Consensus 889 ~~~~~---~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~ 965 (1114)
+...+ .+.....-.+.+..+...++...++.-..||.+...+........ .+.+.. ..-..+....+..
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~---~~fp~~-----c~~~~~~~~~~~~ 589 (928)
T PF04762_consen 518 IDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQI---VKFPQP-----CPWMEVCQINGSE 589 (928)
T ss_pred eccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCcccc---ccCCCC-----CcEEEEEEECCcc
Confidence 74332 233333334556666666665557777789988866665532211 111110 1112333333332
Q ss_pred --EEEE--EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001248 966 --HFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 966 --~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
.++. +..+.+++ ++..+ ...+++.++ .+.+|+.......+++.++.
T Consensus 590 ~~~~~~GLs~~~~Ly~----n~~~l--------a~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 590 DKRVLFGLSSNGRLYA----NSRLL--------ASNCTSFAV--TDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred ceeEEEEECCCCEEEE----CCEEE--------ecCCceEEE--EcCEEEEEecCceEEEEECc
Confidence 2333 34455543 12221 346777777 45577777778889999988
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.35 E-value=8.7e-10 Score=122.11 Aligned_cols=252 Identities=14% Similarity=0.217 Sum_probs=162.4
Q ss_pred CCCccEEEEeeCCCEEEEEeC-----CeEEEEEcCCC--c--cccccCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEE
Q 001248 818 EEAVPCFALSKNDSYVMSASG-----GKISLFNMMTF--K--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 887 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~d-----g~i~iwd~~~~--~--~~~~~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iw 887 (1114)
......++++|++++|.+... +.|..|++... + .+............++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 344567899999999998862 57888888753 2 2233332344567899999 777777765 68999999
Q ss_pred Eccc-ceEEEe---ec----------ccccCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCc--cccccccccCCCCCC
Q 001248 888 NVRV-DEVKSK---LK----------GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWE--KQKNRFLQIPTGRTP 950 (1114)
Q Consensus 888 d~~~-~~~~~~---l~----------~h~~~V~~l~~s~d~~~l~s~s~-D~~v~iwd~~~~~--~~~~~~~~~~~~~~~ 950 (1114)
++.. |.+... +. .-.....++.|+|||++|++... ...|.+|+++... ......+....+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G--- 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG--- 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence 9987 443322 11 11234678999999998887642 3469999998754 222222333333
Q ss_pred CCCCceEEEEccCCcEEEEE--eCCeEEEEEcC--CCce--eeeeecC--CC--CcCeeEEEECCCCCEEEEEEc-CCeE
Q 001248 951 TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVPR--ES--SAPITHATFSCDSQLVYACFL-DATV 1019 (1114)
Q Consensus 951 ~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~--~h--~~~v~~l~~s~dg~~l~s~s~-Dg~I 1019 (1114)
...+.++|+|||+++.+. .++.|.+|++. ++.. +..+..- +. ......|+++|||++|+++.. +..|
T Consensus 192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI 269 (345)
T PF10282_consen 192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI 269 (345)
T ss_dssp --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence 356999999999999884 56789999988 4422 2222211 11 226889999999999987764 5689
Q ss_pred EEEEcC--CCeeeEEeCCCcccCC-CCCCCCccceEEEecCCCCCeEEEEe-CCCcEEEEeccCCCCccc
Q 001248 1020 CVFSAA--NLKLRCRINPSAYLPA-GVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKWG 1085 (1114)
Q Consensus 1020 ~vwd~~--~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~d~~~l~s~~-~Dg~v~vW~i~~~~~~~~ 1085 (1114)
.+|+++ +|++.. +. ..+. | ..|..++++| |+++|+++. .++.|.+|++....+.|.
T Consensus 270 ~vf~~d~~~g~l~~-~~---~~~~~G-----~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 270 SVFDLDPATGTLTL-VQ---TVPTGG-----KFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEECTTTTTEEE-EE---EEEESS-----SSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEEEecCCCceEE-EE---EEeCCC-----CCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence 999993 344332 21 1111 2 4567899999 578877766 667999999865544443
No 256
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.7e-10 Score=117.29 Aligned_cols=181 Identities=14% Similarity=0.197 Sum_probs=134.6
Q ss_pred EEEccCccee-eecccC--ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC--CC
Q 001248 757 LIFTNSGNAI-LALASN--AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN--DS 831 (1114)
Q Consensus 757 l~~s~~~~~l-~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d--~~ 831 (1114)
+.-++....+ ++|+.. ..+.|||+.... ++|....-. ...-+..-.-.++.+.|-+. ..
T Consensus 154 ~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-------------qiw~aKNvp---nD~L~LrVPvW~tdi~Fl~g~~~~ 217 (412)
T KOG3881|consen 154 VRQTDTDPYIVATGGKENINELKIWDLEQSK-------------QIWSAKNVP---NDRLGLRVPVWITDIRFLEGSPNY 217 (412)
T ss_pred eccCCCCCceEecCchhcccceeeeecccce-------------eeeeccCCC---CccccceeeeeeccceecCCCCCc
Confidence 3333433334 447777 789999987542 355443221 11111113445677888777 77
Q ss_pred EEEEEe-CCeEEEEEcCCCc-cccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe-ecccccCeeEE
Q 001248 832 YVMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGL 908 (1114)
Q Consensus 832 ~l~~~~-dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l 908 (1114)
.||++. -+.+++||...+. ++..+.-...+++++...| +++++.+|..-|.+..||..+++++.. +.+-.+.|++|
T Consensus 218 ~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 218 KFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI 296 (412)
T ss_pred eEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence 889888 7999999998654 5566777788999999999 999999999999999999999998877 89999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 909 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 909 ~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
..+|.+++||++|-|+.|+|+|+++.+.....++. ..++++.+.++
T Consensus 297 h~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK---------s~lt~il~~~~ 342 (412)
T KOG3881|consen 297 HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK---------SRLTFILLRDD 342 (412)
T ss_pred EEcCCCceEEeeccceeEEEeecccchhhhhhhhh---------ccccEEEecCC
Confidence 99999999999999999999999996554433332 13466666554
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=3.1e-10 Score=128.64 Aligned_cols=223 Identities=11% Similarity=0.086 Sum_probs=132.6
Q ss_pred CCCCceEEEEcCCCCe--EEEEEecCC--cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 357 QGSSPMSMDFHPVQQT--LLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~--ll~tg~~dg--~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
....+..-+|||||+. ++++...+| .|.+.++.+|+... +....+.....+|||||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK 242 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence 5566788999999986 333544444 58888988876543 22233345678999999
Q ss_pred CeEEEEeC-----CCeEEEEEccCCc--eeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE--eCCC-Ccce
Q 001248 433 SLFGVAYS-----RHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW--DATN-GAKQ 502 (1114)
Q Consensus 433 ~~las~~~-----dg~i~iwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw--d~~~-~~~~ 502 (1114)
+.||..+. +..+.+|++.++. ...+ ...++.+.....+|+|||+.+ +++...++...+| ++.. +...
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~L-af~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTRL-VFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECcccccce
Confidence 99987653 2234557776532 1221 122233345678999999962 3344456655555 4432 3334
Q ss_pred eEeeccccCEEEEeeccCCCceEEEEEecC---CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeE
Q 001248 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~ 579 (1114)
..+..+...+....|++ ||+.|+..+.+ ..|.+||+.+++.... ......+....|+|||+
T Consensus 320 ~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~------------- 383 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSL------------- 383 (428)
T ss_pred EEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCC-------------
Confidence 55555555666777755 55677665543 3688999887654332 22222344455555554
Q ss_pred EEecCCCCEEEEEe---CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCC
Q 001248 580 VQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629 (1114)
Q Consensus 580 ~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 629 (1114)
.|+..+ ....|++||+.+++........+ .+...+|+|-
T Consensus 384 --------~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~ 425 (428)
T PRK01029 384 --------HLVYSAGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAF 425 (428)
T ss_pred --------EEEEEECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCC
Confidence 444332 34678999998877655544322 3566788874
No 258
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.30 E-value=6.1e-09 Score=109.85 Aligned_cols=294 Identities=12% Similarity=0.124 Sum_probs=187.9
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCcc-EEEEeeCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-CFALSKND 830 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~-~v~~s~d~ 830 (1114)
..|..+.|+|++++|.+-...+.+ +.. .+..+... ...+.+||..+|.++...... ....... -+.|+.|.
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~---~pe-~e~sp~~~---~n~~~vwd~~sg~iv~sf~~~-~q~~~~Wp~~k~s~~D 143 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPII---EPE-IEISPFTS---KNNVFVWDIASGMIVFSFNGI-SQPYLGWPVLKFSIDD 143 (561)
T ss_pred CCceecccCcccceeeeeccCCcc---Chh-hccCCccc---cCceeEEeccCceeEeecccc-CCcccccceeeeeecc
Confidence 457778888999888876665443 100 01111111 014678888888876542211 1111133 67899999
Q ss_pred CEEEEEeCCeEEEEEcCCCccc-cccCCC-CCCeEEEEEecC-CCcEEEE-----EeCCCcEEEEEcccceEEEeecccc
Q 001248 831 SYVMSASGGKISLFNMMTFKTM-ATFMPP-PPAATFLAFHPQ-DNNIIAI-----GMDDSSIQIYNVRVDEVKSKLKGHS 902 (1114)
Q Consensus 831 ~~l~~~~dg~i~iwd~~~~~~~-~~~~~~-~~~i~~l~~sp~-d~~~la~-----g~~dg~v~iwd~~~~~~~~~l~~h~ 902 (1114)
+++|-.....+.|+++ +.... ..+... ...|+...|+|. ++..||. +..++++++|.+..++.+....-..
T Consensus 144 ~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk 222 (561)
T COG5354 144 KYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK 222 (561)
T ss_pred hhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe
Confidence 9988777788999997 33221 111111 356888999994 2334553 4577899999998776654433222
Q ss_pred cCeeEEEEcCCCCEEEEEe-----------CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-E
Q 001248 903 KRITGLAFSHALNVLVSSG-----------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V 970 (1114)
Q Consensus 903 ~~V~~l~~s~d~~~l~s~s-----------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~ 970 (1114)
..=..+.|.+.|++|..-- ....+.|+++...... ... ...+.|...+|.|+++.+++ +
T Consensus 223 ~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~------V~~---~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 223 VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIP------VEK---DLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccc------eec---cccccceeeeecccCCceeEEe
Confidence 2234688888888766421 1245788887742221 110 11258999999999998887 2
Q ss_pred --eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCCeeeE-EeCCCcccCCCCC
Q 001248 971 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRC-RINPSAYLPAGVS 1044 (1114)
Q Consensus 971 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D---g~I~vwd~~~~~~~~-~~~~~~~~~~~~~ 1044 (1114)
.+..+.++|++.. ....+. ...=..+.|||.+++++.++-| |.|-+||........ .+. +
T Consensus 294 g~~pa~~s~~~lr~N-l~~~~P----e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-------~-- 359 (561)
T COG5354 294 GYMPASVSVFDLRGN-LRFYFP----EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-------G-- 359 (561)
T ss_pred cccccceeecccccc-eEEecC----CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee-------c--
Confidence 5778999999866 333322 3445678899999999887765 679999987665554 444 2
Q ss_pred CCCccceEEEecCCCCCeEEEEe------CCCcEEEEeccCCC
Q 001248 1045 SSNVHPLVIAAHPQEPNEFALGL------SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1045 ~~~v~~~~~~~~~~d~~~l~s~~------~Dg~v~vW~i~~~~ 1081 (1114)
.....+.|+| |++++.+.. .|..+.+|++...+
T Consensus 360 ---~n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 360 ---LNTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ---CCceEeeccC-CceEEEecCCCcccccCcceEEEEecCch
Confidence 1222578999 678776654 47899999998876
No 259
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=1.1e-08 Score=104.38 Aligned_cols=255 Identities=13% Similarity=0.205 Sum_probs=172.3
Q ss_pred CCCCccEEEEeeCCCEEEEEe----CCeEEEEEcCC--Cccc--cccCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT--FKTM--ATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY 887 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iw 887 (1114)
....++-++++|+++.|.++. +|.|.-|.+.. |... ........+-+.+++++ ++++|+++. .-|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566788899999999888875 36677777764 4432 22222233448899999 888888775 56799999
Q ss_pred Eccc-ceEEE--eecccccC----------eeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001248 888 NVRV-DEVKS--KLKGHSKR----------ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 952 (1114)
Q Consensus 888 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~d~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 952 (1114)
-+.. |.+.. .+..|.+. +-...|.|++++|++.+ .|+ |.+|+++.+............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9865 43221 22235444 77889999999999875 454 9999999876655444444444
Q ss_pred CCceEEEEccCCcEEEEE--eCCeEEEEEcCCC-ceeeeeec-----CCC--CcCeeEEEECCCCCEEEEEEc-CCeEEE
Q 001248 953 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKL-ECVKQWVP-----RES--SAPITHATFSCDSQLVYACFL-DATVCV 1021 (1114)
Q Consensus 953 ~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~-~~~~~~~~-----~~h--~~~v~~l~~s~dg~~l~s~s~-Dg~I~v 1021 (1114)
...+.++|+|++++..+. -+++|.+|..... ..+..+.. ... ......|.+++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 356999999999998873 6789999998773 22222110 111 456788999999999997764 246888
Q ss_pred EEcCC--CeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-CcEEEEeccCCCCcccCC
Q 001248 1022 FSAAN--LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLESEGKWGVP 1087 (1114)
Q Consensus 1022 wd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-g~v~vW~i~~~~~~~~~~ 1087 (1114)
|.++. +++. .+. ... .....|-.+.|++ ++++|+++..| .+|.++.+....+.+...
T Consensus 271 f~V~~~~g~L~-~~~--~~~-----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 271 FSVDPDGGKLE-LVG--ITP-----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred EEEcCCCCEEE-EEE--Eec-----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 87743 3322 221 011 1224566789998 57787777765 589999998777666554
No 260
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.29 E-value=1.6e-10 Score=115.01 Aligned_cols=150 Identities=9% Similarity=0.147 Sum_probs=107.9
Q ss_pred eEEEEcCCCCEEEEEeC---C-------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE---eC
Q 001248 906 TGLAFSHALNVLVSSGA---D-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HE 972 (1114)
Q Consensus 906 ~~l~~s~d~~~l~s~s~---D-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~---~d 972 (1114)
..+.|+++|.+|+.-.. | +...+|-++..+.. ...+.... .+.|..++|+|+|+.+|+. .+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-~~~i~l~~-----~~~I~~~~WsP~g~~favi~g~~~ 82 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-VESIELKK-----EGPIHDVAWSPNGNEFAVIYGSMP 82 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-cceeeccC-----CCceEEEEECcCCCEEEEEEccCC
Confidence 35789999988775433 1 33566666443221 11121111 1368999999999998762 46
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCCeeeEEeCCCcccCCCCCCCCcc
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1049 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1049 (1114)
..+.+||++ ++.+..+. ...+..+.|||+|++|++++.+ |.|.+||+.+.+.+.... . ..
T Consensus 83 ~~v~lyd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-------~-----~~ 145 (194)
T PF08662_consen 83 AKVTLYDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-------H-----SD 145 (194)
T ss_pred cccEEEcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-------c-----Cc
Confidence 789999996 66666553 5677899999999999998754 679999999999887655 1 12
Q ss_pred ceEEEecCCCCCeEEEEeC------CCcEEEEeccC
Q 001248 1050 PLVIAAHPQEPNEFALGLS------DGGVHVFEPLE 1079 (1114)
Q Consensus 1050 ~~~~~~~~~d~~~l~s~~~------Dg~v~vW~i~~ 1079 (1114)
+..+.|+| ||++++++.. |+.++||++..
T Consensus 146 ~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 146 ATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 34899999 7999998875 79999999863
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=4.8e-10 Score=111.81 Aligned_cols=282 Identities=13% Similarity=0.207 Sum_probs=172.7
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC-
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS- 433 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~- 433 (1114)
+...+-|.+|.|..+|.+ ||||..+|.|.++.-+....- ..+++-. .+.-...+....--.-...|..+.|.+++.
T Consensus 22 vteadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~~-ey~~~t~-fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 22 VTEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYKG-EYNFQTE-FQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred echhcceeeEEeecccce-EeecCCCCeEEEeeccccccc-ceeeeee-eeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 446678999999999996 999999999999986543221 1111100 000011111100111234689999998665
Q ss_pred -eEEEEeCCCeEEEEEccCCceee--------------------------------eeEe-eccccCCeeEEEecCCCCe
Q 001248 434 -LFGVAYSRHIVQIYSYHGGDEVR--------------------------------QHLE-IDAHVGGVNDIAFSHPNKQ 479 (1114)
Q Consensus 434 -~las~~~dg~i~iwd~~~~~~~~--------------------------------~~~~-l~~h~~~V~~v~~s~d~~~ 479 (1114)
.++..+.|.+|++|.+....... +... -.+|.--|+++.++.|..
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E- 177 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE- 177 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence 46667799999999886422110 0001 145777899999999998
Q ss_pred eEEEEecCCCCEEEEeCCCCccee---Eee-----ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCee----
Q 001248 480 LCVITCGDDKTIKVWDATNGAKQY---IFE-----GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---- 547 (1114)
Q Consensus 480 ~~l~s~~~d~~i~iwd~~~~~~~~---~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---- 547 (1114)
.++++ .|=.|.+|+++--..-. .++ .-..-|++..|+|... ++++-.+..|+|++.|++.....-
T Consensus 178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence 45555 47789999987432211 112 2235577888888765 578888889999999998532211
Q ss_pred eecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEEC-CCcceEEEeccCCCC--------
Q 001248 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGL-------- 618 (1114)
Q Consensus 548 ~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~-------- 618 (1114)
.+..+..+. .+..+ ..--..+.-+.|++.|+++++-+ --+|++||+ ...+++.++..|...
T Consensus 255 lfEepedp~--------~rsff-seiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY 324 (433)
T KOG1354|consen 255 LFEEPEDPS--------SRSFF-SEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY 324 (433)
T ss_pred hhccccCCc--------chhhH-HHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHh
Confidence 111111110 00000 00011344456666666666543 378999998 455666666544321
Q ss_pred --CCc---CeEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 619 --PAS---PRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 619 --~~v---~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
..| ..++|+.++.++++|+..+.+++++...|...
T Consensus 325 EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 325 ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred hccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence 112 36889999999999999999999997776443
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=9.6e-10 Score=125.82 Aligned_cols=222 Identities=11% Similarity=0.038 Sum_probs=129.9
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCC--cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg--~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....+...+.+..|||||++|+++...++ .|++||+.+++... +....+.....+|||
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSP 271 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSP 271 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECC
Confidence 34457788999999999998555544443 58899998876532 111122345689999
Q ss_pred CCCeEEEE-eCCCe--EEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC--CEEEEeCCCCcceeEe
Q 001248 431 DGSLFGVA-YSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIF 505 (1114)
Q Consensus 431 dg~~las~-~~dg~--i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~ 505 (1114)
||+.|+.. +.++. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++... +
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-L 345 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-L 345 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-E
Confidence 99988764 55664 777788877533 34455566778999999996 334444444 47777877776433 3
Q ss_pred eccccCEEEEeeccCCCceEEEEEec-CCe--EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
..........+|+ +||++++..+. ++. |.++|+.++.... +... ....... |
T Consensus 346 t~~g~~~~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps---------------------~ 400 (448)
T PRK04792 346 TFEGEQNLGGSIT--PDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPS---------------------V 400 (448)
T ss_pred ecCCCCCcCeeEC--CCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCce---------------------E
Confidence 2222223344664 45566666544 443 4445665543221 1111 1111223 4
Q ss_pred cCCCCEEEEEe-CCC--eEEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 583 DTTKNRFLAAG-DDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 583 ~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
+|+|+.++..+ .++ .+++++. +|.....+.... ..+...+|+|
T Consensus 401 spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g~~~~p~Wsp 446 (448)
T PRK04792 401 APNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--GEVKSPAWSP 446 (448)
T ss_pred CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC--CCcCCCccCC
Confidence 45555555544 333 4777786 555566665432 2456777876
No 263
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.7e-09 Score=113.16 Aligned_cols=295 Identities=12% Similarity=0.149 Sum_probs=187.3
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
..|.-+.|||+.++|++-+..-...-|+= .....+.+||+.+|.+......-......-.-+.||.|++
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d-----------~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK 318 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDD-----------NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK 318 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCccc-----------CCCceEEEEEccccchhcceeccCCCccccceEEeccCCc
Confidence 45677889999999888665422221110 0011345666667766543322111222233468999999
Q ss_pred EEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEEcccceEEEeecccccCee
Q 001248 832 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 832 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d-----g~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
|+|.-..+.|.||+..+..++..-......|....|+| .+++||.=... ..+.+-.+.+++.+++-.-|.-.=.
T Consensus 319 y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc 397 (698)
T KOG2314|consen 319 YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC 397 (698)
T ss_pred eeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence 99988888999999887655544333456789999999 88888865432 3677778888877776665554445
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-E-e--C
Q 001248 907 GLAFSHALNVLVSSG----------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-H--E 972 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~-~--d 972 (1114)
.+-|-.+|.+|+.-- .-..+.|+.+....... .... ....|...+|-|.|..+++ + . .
T Consensus 398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv----e~ve----lke~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV----EVVE----LKESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc----eeee----cchheeeeeeccCCCeEEEEEccccc
Confidence 577888888887532 12235566666533211 1111 1136788999999999888 3 2 2
Q ss_pred CeEEEEEcCCC----ceeeeeecCCCCcCeeEEEECCCCCEEEEEE---cCCeEEEEEcCCCeeeEEeCCCcccCCCCCC
Q 001248 973 TQLAIFETTKL----ECVKQWVPRESSAPITHATFSCDSQLVYACF---LDATVCVFSAANLKLRCRINPSAYLPAGVSS 1045 (1114)
Q Consensus 973 ~~i~iwd~~~~----~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s---~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
.++.+|.+.+. +.+..+. ....+.+.|||.|++++.+. ..|.+.++|++-..+...-.+.++.
T Consensus 470 ~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~------ 539 (698)
T KOG2314|consen 470 NTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA------ 539 (698)
T ss_pred cceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccc------
Confidence 46888887732 2233332 34567899999999987654 5688999998853333222211211
Q ss_pred CCccceEEEecCCCCCeEEEEeC------CCcEEEEeccCCC
Q 001248 1046 SNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1081 (1114)
Q Consensus 1046 ~~v~~~~~~~~~~d~~~l~s~~~------Dg~v~vW~i~~~~ 1081 (1114)
...+.|.|. |++++++++ |..-++|+++...
T Consensus 540 ----at~veWDPt-GRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 540 ----ATEVEWDPT-GRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred ----cccceECCC-CCEEEEeeehhhhccccceEEEEeecHH
Confidence 225889995 899999886 4566778876544
No 264
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.26 E-value=1.6e-09 Score=124.94 Aligned_cols=205 Identities=14% Similarity=0.120 Sum_probs=138.4
Q ss_pred CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC---CcEEEEEcccceEEEeecccccCeeEEEEcCCCC
Q 001248 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 915 (1114)
Q Consensus 839 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 915 (1114)
..|.++|.... ..+.+..+...+...+|+| ||+.||.+..+ ..|++||+.+++.. .+..+.+.+.+++|+|||+
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC
Confidence 35888887543 3445555666788999999 88888877644 47999999987643 3334556677899999999
Q ss_pred EEEE-EeCCC--cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeC----CeEEEEEcCCCceeee
Q 001248 916 VLVS-SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQ 988 (1114)
Q Consensus 916 ~l~s-~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d----~~i~iwd~~~~~~~~~ 988 (1114)
.|+. .+.++ .|.+|++.++.... + . .+. .......|+|||++|+...+ ..|.++|+.+++....
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~---l--~-~~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l 317 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTR---L--T-NGP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL 317 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEE---C--C-CCC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 7764 44444 58888988754321 1 1 111 12356789999999887422 2688888887765332
Q ss_pred eecCCCCcCeeEEEECCCCCEEEEEEcCC---eEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEE
Q 001248 989 WVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 989 ~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg---~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
. .+...+..+.|+|||++|+.++.++ .|.+||+.++.... +. .. .. . ....|+| |++.|+.
T Consensus 318 -~--~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~------~~--~~-~--~~p~~sp-dg~~l~~ 381 (417)
T TIGR02800 318 -T--FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT------DT--GL-D--ESPSFAP-NGRMILY 381 (417)
T ss_pred -e--cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc------CC--CC-C--CCceECC-CCCEEEE
Confidence 2 2345677889999999999888776 79999998865432 22 01 01 1 1457888 6777777
Q ss_pred EeCCCc
Q 001248 1066 GLSDGG 1071 (1114)
Q Consensus 1066 ~~~Dg~ 1071 (1114)
++.++.
T Consensus 382 ~~~~~~ 387 (417)
T TIGR02800 382 ATTRGG 387 (417)
T ss_pred EEeCCC
Confidence 766653
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.25 E-value=1e-08 Score=109.78 Aligned_cols=238 Identities=10% Similarity=0.063 Sum_probs=151.7
Q ss_pred EeeCCCEEEEEe-----------CCeEEEEEcCCCccccccCCCCC-------CeEEEEEecCCCcEEEEEe-C-CCcEE
Q 001248 826 LSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-D-DSSIQ 885 (1114)
Q Consensus 826 ~s~d~~~l~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~la~g~-~-dg~v~ 885 (1114)
+|||++.|.++. ++.|.+||..+++.+..+..... ....++++| ||++|++.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 999999877664 37799999999999988764322 234789999 888888766 4 68999
Q ss_pred EEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc-CC
Q 001248 886 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQ 964 (1114)
Q Consensus 886 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp-dg 964 (1114)
+.|+.+++.+.++.-- +...-...+.+..+ +-+.||......++............+.+... .-...- .|++ ||
T Consensus 132 VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~-~v~~rP-~~~~~dg 206 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVP-DCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE-YLINHP-AYSNKSG 206 (352)
T ss_pred EEECCCCcEEEEEeCC-CCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCcc-ccccCC-ceEcCCC
Confidence 9999999998877642 22222233322222 22345554444443322211111111111000 000011 4566 99
Q ss_pred cEEEEEeCCeEEEEEcCCC-----ceeeeeecCC-----CCcCeeEEEECCCCCEEEEEEc----------CCeEEEEEc
Q 001248 965 IHFLVVHETQLAIFETTKL-----ECVKQWVPRE-----SSAPITHATFSCDSQLVYACFL----------DATVCVFSA 1024 (1114)
Q Consensus 965 ~~l~~~~d~~i~iwd~~~~-----~~~~~~~~~~-----h~~~v~~l~~s~dg~~l~s~s~----------Dg~I~vwd~ 1024 (1114)
+++.++.+|.|.+.|+.+. +....+.... ..+.+.-+++++|++.|++... .+.|.++|.
T Consensus 207 ~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 207 RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 9999988899999995433 2222221110 1233444999999999988542 247999999
Q ss_pred CCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC-eEEEEe-CCCcEEEEeccCCC
Q 001248 1025 ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~i~~~~ 1081 (1114)
.+++.+.++. . | ..+..++++| |++ +|++.. .++.|.+.|..+++
T Consensus 287 ~t~kvi~~i~----v--G-----~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 287 KTGKRLRKIE----L--G-----HEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CCCeEEEEEe----C--C-----CceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence 9999999887 2 2 1233799999 567 777666 67899999999988
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=2.1e-09 Score=123.97 Aligned_cols=222 Identities=10% Similarity=0.058 Sum_probs=132.2
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecC--CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~d--g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
....+...+...+|||||++|+++...+ ..|.+||+.+++... +....+.+...+|||
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAWSP 252 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEECC
Confidence 4556788899999999999855555443 369999999886543 222233456789999
Q ss_pred CCCeEEEE-eCCC--eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC--CEEEEeCCCCcceeEe
Q 001248 431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIF 505 (1114)
Q Consensus 431 dg~~las~-~~dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~ 505 (1114)
||++|+.. +.+| .|.+||+.+++.. .+..+........|+|||+.+ +++...++ .|.++|+.+++... +
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~i-~f~s~~~g~~~iy~~d~~~g~~~~-l 326 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRTL-YFTSDRGGKPQIYKVNVNGGRAER-V 326 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECCCCCEEE-e
Confidence 99998854 4444 5888899887643 245566667788999999963 33443443 57788887776433 3
Q ss_pred eccccCEEEEeeccCCCceEEEEEec-CC--eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEe
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF 582 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~ 582 (1114)
...........|+ ++|+.++..+. ++ .|.+||+.+++... +.. ........|
T Consensus 327 t~~~~~~~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~--------------------- 381 (430)
T PRK00178 327 TFVGNYNARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSV--------------------- 381 (430)
T ss_pred ecCCCCccceEEC--CCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceE---------------------
Confidence 2112222334554 45567766654 33 47778887654322 111 111122344
Q ss_pred cCCCCEEEEEeCC---CeEEEEECCCcceEEEeccCCCCCCcCeEEEcC
Q 001248 583 DTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 583 ~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
+|+|+.++..+.+ ..|++++... .....+.... ..+...+|+|
T Consensus 382 spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~ 427 (430)
T PRK00178 382 APNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP 427 (430)
T ss_pred CCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence 4444455554432 3567777743 3334444322 2356667766
No 267
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=4.1e-09 Score=121.68 Aligned_cols=191 Identities=14% Similarity=0.113 Sum_probs=122.8
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC--C
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 490 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~ 490 (1114)
+..+...+...+|||||++|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566678999999999999987654 479999999876432 3345566778999999996 344555444 5
Q ss_pred EEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-CC--eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCe
Q 001248 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1114)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 567 (1114)
|++||+.++.. ..+..+........|++ +|+.|+..+. ++ .|.++|+.+.+. ..+........
T Consensus 260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~---------- 325 (417)
T TIGR02800 260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNA---------- 325 (417)
T ss_pred EEEEECCCCCE-EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCcc----------
Confidence 89999887754 44444544444556654 5667766554 33 466667654332 12222222222
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCCC---eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCC
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 640 (1114)
...|+|++++++.++.++ .|.+||+.++... .+.... ......|+|||+.|+..+.++
T Consensus 326 -----------~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~---~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 326 -----------SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG---LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred -----------CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC---CCCCceECCCCCEEEEEEeCC
Confidence 344556666777776655 7899998876543 333221 235678999999888877654
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.21 E-value=2e-09 Score=107.64 Aligned_cols=215 Identities=13% Similarity=0.127 Sum_probs=141.6
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEc-cCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~-~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
.+.||.+.|++...-|-..-+.+.+.|.+++||-- +.++....+ ...-..+++++.+.++.. .|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR--RLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce--EEEEEEecceEEE
Confidence 57899999999999998888999999999999954 344433221 123456789999999888 6888888899888
Q ss_pred EeCC----CCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEE
Q 001248 494 WDAT----NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 494 wd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
+.+. .-..++....|...|..+.|+..+ ..+++.+.|..+.---.+.+..+-.+.. .+.+..+
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----~~~~t~~------ 161 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYNF-----ETPASAL------ 161 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceEe-----eccCCCC------
Confidence 8654 344556777899999999887665 6899999888764322222222111100 0000000
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEEC--CCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
.+.- .+...|...|.|.+-.+ ..-..+.++.++ ...+.+++|.+....|.+|..|..+.+||+
T Consensus 162 -----------~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 162 -----------QFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDI 226 (404)
T ss_pred -----------ceee--EEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEec
Confidence 0000 02334444555554443 233455566544 668999999999999999999999999998
Q ss_pred cCCccceeeccccc
Q 001248 648 SDGIRLLRTFENLA 661 (1114)
Q Consensus 648 ~~~~~~~~~~~~~~ 661 (1114)
.........+.+|.
T Consensus 227 gg~~g~~~el~gh~ 240 (404)
T KOG1409|consen 227 GGRKGTAYELQGHN 240 (404)
T ss_pred cCCcceeeeeccch
Confidence 76644444444433
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.1e-08 Score=108.79 Aligned_cols=320 Identities=11% Similarity=0.157 Sum_probs=198.8
Q ss_pred eEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCC-----------CcEEEEE
Q 001248 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----------NGIKILA 646 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d-----------g~i~iwd 646 (1114)
+.+.|||.|.+|++--..| |.+|--.+-..++.+... .|.-+.|||..+||++-+.. ..+.|||
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp----~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP----GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC----CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 3456666666777766544 678977766666666533 47889999999999987542 4566777
Q ss_pred ccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCce
Q 001248 647 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 726 (1114)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 726 (1114)
+.+| ...+.+.
T Consensus 289 I~tG-~lkrsF~-------------------------------------------------------------------- 299 (698)
T KOG2314|consen 289 IATG-LLKRSFP-------------------------------------------------------------------- 299 (698)
T ss_pred cccc-chhccee--------------------------------------------------------------------
Confidence 7666 3333221
Q ss_pred eEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCc
Q 001248 727 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 806 (1114)
Q Consensus 727 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 806 (1114)
.+. .....-.-+.||.|+++++....+ .|.||+... + -+.+ ++
T Consensus 300 ---------------~~~----~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtps--f------------~lld---~K 342 (698)
T KOG2314|consen 300 ---------------VIK----SPYLKWPIFRWSHDDKYFARMTGN-SISIYETPS--F------------MLLD---KK 342 (698)
T ss_pred ---------------ccC----CCccccceEEeccCCceeEEeccc-eEEEEecCc--e------------eeec---cc
Confidence 100 011112236788999988877765 677776432 0 0111 11
Q ss_pred cccccCCCCCCCCCccEEEEeeCCCEEEEEe---C---CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe-
Q 001248 807 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM- 879 (1114)
Q Consensus 807 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~- 879 (1114)
.+ .-..|....|+|-+..||.-. + -++.+..+.+++.+++...+.-.=..+-|-. .|.+|+.--
T Consensus 343 sl--------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvd 413 (698)
T KOG2314|consen 343 SL--------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVD 413 (698)
T ss_pred cc--------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEE
Confidence 11 235578889999999999765 1 3588888888887777665543333455555 677776422
Q ss_pred ---------CCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccccccCCC
Q 001248 880 ---------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTG 947 (1114)
Q Consensus 880 ---------~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~ 947 (1114)
.-..+.|+.+.....--....-...|...+|-|.|..+++-+.. .++.+|.+++... ....+..++.
T Consensus 414 R~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-~~~lVk~~dk 492 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-KPSLVKELDK 492 (698)
T ss_pred eeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-chhhhhhhcc
Confidence 11234455554433222222345678999999999888765543 5799999985322 2333333332
Q ss_pred CCCCCCCceEEEEccCCcEEEEE----eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEc------CC
Q 001248 948 RTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL------DA 1017 (1114)
Q Consensus 948 ~~~~~~~i~~v~fspdg~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~------Dg 1017 (1114)
. ..+.+.|+|.|++++++ ..|.+..+|+.-..+..+-. .. ....+.+-|.|.|+|+++++. |.
T Consensus 493 ~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~e-h~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 493 K-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-PE-HFAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred c-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-cc-ccccccceECCCCCEEEEeeehhhhcccc
Confidence 1 35789999999999883 46789999987533333211 12 235678899999999999885 33
Q ss_pred eEEEEEcC
Q 001248 1018 TVCVFSAA 1025 (1114)
Q Consensus 1018 ~I~vwd~~ 1025 (1114)
--++|++.
T Consensus 566 GYri~tfq 573 (698)
T KOG2314|consen 566 GYRIFTFQ 573 (698)
T ss_pred ceEEEEee
Confidence 45666654
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.15 E-value=5e-09 Score=113.07 Aligned_cols=188 Identities=16% Similarity=0.302 Sum_probs=147.9
Q ss_pred eCCCEEEEEe-CCeEEEEEcCCCccccccCCC---CCCeEEEEEe------c-------------CCCcEEEEEeCCCcE
Q 001248 828 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFH------P-------------QDNNIIAIGMDDSSI 884 (1114)
Q Consensus 828 ~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~s------p-------------~d~~~la~g~~dg~v 884 (1114)
|...++|... ||.+++|+...++....+... .+..++.+|. | .|-.++|-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456788777 999999999988877666432 2334444442 1 134588999999999
Q ss_pred EEEEcccceEEEeec--ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc
Q 001248 885 QIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 885 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp 962 (1114)
.+|++..|+....+. .|.+.|+++.++.+-..|.|++.|+.+..|+...... ++...+..+ .+..++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-----~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-----IRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-----eeeeccCCC---ccceEEEcC
Confidence 999999999888886 5999999999999999999999999999999988443 334443332 678999999
Q ss_pred CCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCC-----CCEEEE-EEcCCeEEEEEcCC
Q 001248 963 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQLVYA-CFLDATVCVFSAAN 1026 (1114)
Q Consensus 963 dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~~l~s-~s~Dg~I~vwd~~~ 1026 (1114)
||+.|+++ .++|++||+++++.+..|. ||.++|.+++|..+ |.++++ ...+..+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988875 5789999999999999997 99999999999887 677554 44556688886643
No 271
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=2.4e-08 Score=114.33 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=117.4
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCC--
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT-- 490 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~-- 490 (1114)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44556688999999999999987543 258889998876432 2222334457899999996 3445555665
Q ss_pred EEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-CCe--EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCe
Q 001248 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1114)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 567 (1114)
|++||+.+++. ..+..+.......+|++ ||+.++..+. ++. |.++|+.+++.. .+..........
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~-------- 355 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGG-------- 355 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCe--------
Confidence 88889887764 45555555566677765 5566655443 444 555565543322 111111111223
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeC-CC--eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCC-Cc--
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NG-- 641 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d-g~-- 641 (1114)
.|+|+|++++..+. ++ .|.++|+.+++... +.... ......|+|||+.|+..+.+ +.
T Consensus 356 -------------~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 356 -------------SITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR---LDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred -------------eECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC---CCCCceECCCCCEEEEEEecCCceE
Confidence 44555555655443 33 46667887776533 32221 12346899999988776543 33
Q ss_pred EEEEEc
Q 001248 642 IKILAT 647 (1114)
Q Consensus 642 i~iwd~ 647 (1114)
+.+++.
T Consensus 419 l~~~~~ 424 (448)
T PRK04792 419 LAAVSI 424 (448)
T ss_pred EEEEEC
Confidence 556665
No 272
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1.9e-08 Score=116.08 Aligned_cols=199 Identities=12% Similarity=0.100 Sum_probs=122.2
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC--C
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T 490 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~d---g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~ 490 (1114)
+..+...+...+|||||++|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44566789999999999999887643 368999999886432 3333445567999999996 334555454 5
Q ss_pred EEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEec-CC--eEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCe
Q 001248 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1114)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 567 (1114)
|++||+.+++. ..+..+........|++ ||+.++..+. ++ .|.++|+.+++... +.......
T Consensus 269 Iy~~d~~~~~~-~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~----------- 333 (430)
T PRK00178 269 IYVMDLASRQL-SRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYN----------- 333 (430)
T ss_pred EEEEECCCCCe-EEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCc-----------
Confidence 88889888764 44555555555566654 5566655543 33 46666665543221 11111111
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCC-C--eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCC-C--c
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDD-F--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-N--G 641 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d-g--~ 641 (1114)
....|+|+++.++..+.+ + .|.+||+.+++... +.... ......|+|||+.++..+.+ | .
T Consensus 334 ----------~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 334 ----------ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTS---LDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred ----------cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCC---CCCCceECCCCCEEEEEEecCCceE
Confidence 123456666666665532 2 58889998876533 33211 12356899999998877654 3 3
Q ss_pred EEEEEcc
Q 001248 642 IKILATS 648 (1114)
Q Consensus 642 i~iwd~~ 648 (1114)
+.+++..
T Consensus 400 l~~~~~~ 406 (430)
T PRK00178 400 LMLVSIN 406 (430)
T ss_pred EEEEECC
Confidence 5555553
No 273
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.12 E-value=9.2e-09 Score=100.93 Aligned_cols=273 Identities=12% Similarity=0.147 Sum_probs=168.8
Q ss_pred CceeEEEeccCCCCccccccccCccccccceEEEEEc---cCcc-eeeecccCceEEEEeecccccCCCCCccccccccc
Q 001248 724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT---NSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQL 799 (1114)
Q Consensus 724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s---~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 799 (1114)
|.+.+|++.+.+... ...+.- .....+..+.|. .+|. .++.+-..|.|.++........- .
T Consensus 46 Gkl~Lys~~d~~~~~-l~~~q~---~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~-----------~ 110 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSP-LDTLQC---TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV-----------H 110 (339)
T ss_pred cceEEEeecccccCc-cceeee---ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee-----------e
Confidence 678888888765544 221111 123334444443 2333 34555667888887654221100 0
Q ss_pred cCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcc--ccccCCCCCCeEEEEEecCCCcEEE
Q 001248 800 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIA 876 (1114)
Q Consensus 800 w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~la 876 (1114)
....++..+ ......++.|++.+..++++. +|.+.+-+...... .++++.|.-++....|+..+.+++.
T Consensus 111 L~~ls~~ki--------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvy 182 (339)
T KOG0280|consen 111 LRGLSSKKI--------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVY 182 (339)
T ss_pred ecccchhhh--------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEE
Confidence 000011000 011245677888888888886 78888665554433 3478999999999999987889999
Q ss_pred EEeCCCcEEEEEcc-cceEEEe-ecccccCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCC
Q 001248 877 IGMDDSSIQIYNVR-VDEVKSK-LKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ 953 (1114)
Q Consensus 877 ~g~~dg~v~iwd~~-~~~~~~~-l~~h~~~V~~l~~s~-d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 953 (1114)
+|++||.+.-||++ .++.+.. -+-|...|.+|.-+| .+.++++|+.|-.|++||.++-... + +++. ..+
T Consensus 183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP----l--~~~~--v~G 254 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP----L--FKAK--VGG 254 (339)
T ss_pred ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc----c--ccCc--ccc
Confidence 99999999999998 3444443 566888999998886 5789999999999999999862211 1 1111 126
Q ss_pred CceEEEEccC--CcEEEEEeCCeEEEEEcCCCcee---eeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEE-EEEcCC
Q 001248 954 SDTRVQFHQD--QIHFLVVHETQLAIFETTKLECV---KQWVPRESSAPITHATFSCDSQLVYACF-LDATVC-VFSAAN 1026 (1114)
Q Consensus 954 ~i~~v~fspd--g~~l~~~~d~~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~-vwd~~~ 1026 (1114)
.|..+..+|. +++|+++.-...+|-+...+... .......|.+-...-.|.....+||+++ .|+.++ +|-..+
T Consensus 255 GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 255 GVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 8899999985 34555555555666666554332 1112235555555566644445677755 466644 665554
Q ss_pred C
Q 001248 1027 L 1027 (1114)
Q Consensus 1027 ~ 1027 (1114)
+
T Consensus 335 ~ 335 (339)
T KOG0280|consen 335 G 335 (339)
T ss_pred C
Confidence 4
No 274
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=2.4e-08 Score=113.30 Aligned_cols=219 Identities=13% Similarity=0.076 Sum_probs=125.3
Q ss_pred CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE---EEeCCC--eEEEEEccCCcee
Q 001248 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG---VAYSRH--IVQIYSYHGGDEV 455 (1114)
Q Consensus 381 g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la---s~~~dg--~i~iwd~~~~~~~ 455 (1114)
+.|.+.|.+.+.... +......+..-+|||||+.++ +...+| .|.+.++.+++..
T Consensus 165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK 224 (428)
T ss_pred ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence 367788877654432 333445667789999998633 333343 4777788877643
Q ss_pred eeeEeeccccCCeeEEEecCCCCeeEEEEecC----CCCEEEEeCCCC---cceeEeeccccCEEEEeeccCCCceEEEE
Q 001248 456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----DKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFS 528 (1114)
Q Consensus 456 ~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~----d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 528 (1114)
+ +....+.....+|||||+.+ +++... +-.+..|++..+ +......++.+.....+|+ +||+.|+.
T Consensus 225 ~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS--PDG~~Laf 297 (428)
T PRK01029 225 K----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS--PDGTRLVF 297 (428)
T ss_pred E----eecCCCCccceEECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC--CCCCEEEE
Confidence 2 33334455678999999963 333332 223445777653 3222222222334556664 56676666
Q ss_pred Ee-cCCeEEEEEc--CCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC---CCeEEEE
Q 001248 529 TA-LDGKIKAWLY--DNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFW 601 (1114)
Q Consensus 529 ~~-~d~~i~~wd~--~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw 601 (1114)
.+ .+|...+|.+ ... .....+......+... .|+|+|+.++..+. ...|++|
T Consensus 298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p---------------------~wSPDG~~Laf~~~~~g~~~I~v~ 356 (428)
T PRK01029 298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP---------------------AWSPDGKKIAFCSVIKGVRQICVY 356 (428)
T ss_pred EECCCCCceEEEEECcccccceEEeccCCCCccce---------------------eECCCCCEEEEEEcCCCCcEEEEE
Confidence 55 4665555543 221 1122222222223334 45555555655443 2479999
Q ss_pred ECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeC---CCcEEEEEccCC
Q 001248 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN---DNGIKILATSDG 650 (1114)
Q Consensus 602 d~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~---dg~i~iwd~~~~ 650 (1114)
|+.+++........ ..+....|+|||+.|+.... ...|.++++.++
T Consensus 357 dl~~g~~~~Lt~~~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 357 DLATGRDYQLTTSP---ENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred ECCCCCeEEccCCC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 99888765443321 24577999999998876543 345778887766
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.12 E-value=2.5e-08 Score=112.96 Aligned_cols=304 Identities=12% Similarity=0.081 Sum_probs=178.7
Q ss_pred EEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEE
Q 001248 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 560 (1114)
Q Consensus 481 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 560 (1114)
.++.++.++.|..+|..+|+.+....-......... .++..++.++.++.+..+|..+++.+..............
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 477888889999999999998876654332212222 2335788888999999999988777665443221100000
Q ss_pred EecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCC---CcCeEEEcCCCCEEEEEe
Q 001248 561 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGCLLAVST 637 (1114)
Q Consensus 561 ~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~s~d~~~l~~~~ 637 (1114)
+ .+..++.++.++.|+.||..+|+.+..+....... ...+..+ .+..++.+.
T Consensus 143 ---------------------v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~ 197 (377)
T TIGR03300 143 ---------------------V--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGF 197 (377)
T ss_pred ---------------------E--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEEC
Confidence 0 12357778889999999999999888775432210 0011122 234677888
Q ss_pred CCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccc
Q 001248 638 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 717 (1114)
Q Consensus 638 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 717 (1114)
.+|.+..+|..+|......-..... + .
T Consensus 198 ~~g~v~ald~~tG~~~W~~~~~~~~----------------g-----------------------------------~-- 224 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQRVALPK----------------G-----------------------------------R-- 224 (377)
T ss_pred CCCEEEEEEccCCCEeeeeccccCC----------------C-----------------------------------C--
Confidence 8899999999888432211000000 0 0
Q ss_pred ccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccc
Q 001248 718 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 797 (1114)
Q Consensus 718 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 797 (1114)
. ...++.+. ...+ .+ .+..+++++.+|.++.||...++
T Consensus 225 ----~-~~~~~~~~------------------~~~p----~~--~~~~vy~~~~~g~l~a~d~~tG~------------- 262 (377)
T TIGR03300 225 ----T-ELERLVDV------------------DGDP----VV--DGGQVYAVSYQGRVAALDLRSGR------------- 262 (377)
T ss_pred ----C-chhhhhcc------------------CCcc----EE--ECCEEEEEEcCCEEEEEECCCCc-------------
Confidence 0 00000000 0000 11 13356666677788877764322
Q ss_pred cccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCC-CCeEEEEEecCCCcEE
Q 001248 798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNII 875 (1114)
Q Consensus 798 ~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~l 875 (1114)
.+|....+ .....+ .++..+.+++ +|.+..+|..+++.+....... ........ .+..|
T Consensus 263 ~~W~~~~~--------------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l 323 (377)
T TIGR03300 263 VLWKRDAS--------------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYL 323 (377)
T ss_pred EEEeeccC--------------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEE
Confidence 13433210 011122 2345555555 8999999999998775553221 12222233 24578
Q ss_pred EEEeCCCcEEEEEcccceEEEeecccccCee-EEEEcCCCCEEEEEeCCCcEEEE
Q 001248 876 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVW 929 (1114)
Q Consensus 876 a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~D~~v~iw 929 (1114)
++++.+|.|+++|..+|+.+..+..+...+. +.++. + ..|+.++.||.|..|
T Consensus 324 ~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 324 VVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 8899999999999999999988886665433 23333 3 458889999988765
No 276
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.11 E-value=4.9e-09 Score=113.11 Aligned_cols=146 Identities=15% Similarity=0.241 Sum_probs=118.9
Q ss_pred CcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCe
Q 001248 762 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK 840 (1114)
Q Consensus 762 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~ 840 (1114)
+-..++-+...|.|.+|++.. |.+... +....|.+.|.++.++.+-..|.+++ |..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~----------------------g~it~~-~st~~h~~~v~~~~~~~~~~ciyS~~ad~~ 125 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAG----------------------GEITAK-LSTDKHYGNVNEILDAQRLGCIYSVGADLK 125 (541)
T ss_pred CceEEEeecCCccEEEEEecC----------------------CeEEEE-EecCCCCCcceeeecccccCceEecCCcee
Confidence 344566677778888877653 222222 33335999999999999988999888 899
Q ss_pred EEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCC-----CC
Q 001248 841 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA-----LN 915 (1114)
Q Consensus 841 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d-----~~ 915 (1114)
+..|+..+...++.+......+.+++.+| |+.+|++|+ ++|++||+++++.+..|.||.++|.++.|..+ |.
T Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~ 202 (541)
T KOG4547|consen 126 VVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK 202 (541)
T ss_pred EEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc
Confidence 99999999999999999999999999999 899999886 68999999999999999999999999999876 55
Q ss_pred EEE-EEeCCCcEEEEeCCC
Q 001248 916 VLV-SSGADSQLCVWSSDG 933 (1114)
Q Consensus 916 ~l~-s~s~D~~v~iwd~~~ 933 (1114)
++. +...+.-+.+|-++.
T Consensus 203 ~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 203 YVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eeeeccccccceeEEEEEc
Confidence 554 555666788887776
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.05 E-value=1.6e-07 Score=106.40 Aligned_cols=234 Identities=15% Similarity=0.102 Sum_probs=134.9
Q ss_pred CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEc
Q 001248 370 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY 449 (1114)
Q Consensus 370 g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~ 449 (1114)
+.+ +++++.+|.|.-+|..+|+.+-...+. .... ...+ .++..++.++.++.+..+|.
T Consensus 65 ~~~-v~v~~~~g~v~a~d~~tG~~~W~~~~~----------------~~~~---~~p~--v~~~~v~v~~~~g~l~ald~ 122 (377)
T TIGR03300 65 GGK-VYAADADGTVVALDAETGKRLWRVDLD----------------ERLS---GGVG--ADGGLVFVGTEKGEVIALDA 122 (377)
T ss_pred CCE-EEEECCCCeEEEEEccCCcEeeeecCC----------------CCcc---cceE--EcCCEEEEEcCCCEEEEEEC
Confidence 443 777888999999999999876432211 0001 1122 25778888889999999999
Q ss_pred cCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEe-eccCCCceEEEE
Q 001248 450 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC-PHHKENIQFIFS 528 (1114)
Q Consensus 450 ~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~l~s 528 (1114)
.+|+.+.... +. +.+.+.-.. .+. .++.++.++.|..||.++|+.+..+......+.... -++.-.+..++.
T Consensus 123 ~tG~~~W~~~-~~---~~~~~~p~v-~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~ 195 (377)
T TIGR03300 123 EDGKELWRAK-LS---SEVLSPPLV-ANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV 195 (377)
T ss_pred CCCcEeeeec-cC---ceeecCCEE-ECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE
Confidence 9998765321 11 122211111 233 356677799999999999998877654332211000 001111136778
Q ss_pred EecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcce
Q 001248 529 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 608 (1114)
Q Consensus 529 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 608 (1114)
+..++.+..+|..+++......... +.+......... ......+ .+..+++++.+|.++.||..+|+.
T Consensus 196 ~~~~g~v~ald~~tG~~~W~~~~~~---------~~g~~~~~~~~~-~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~ 263 (377)
T TIGR03300 196 GFAGGKLVALDLQTGQPLWEQRVAL---------PKGRTELERLVD-VDGDPVV--DGGQVYAVSYQGRVAALDLRSGRV 263 (377)
T ss_pred ECCCCEEEEEEccCCCEeeeecccc---------CCCCCchhhhhc-cCCccEE--ECCEEEEEEcCCEEEEEECCCCcE
Confidence 8888999999998876554322110 000000000000 0000001 134677788899999999999987
Q ss_pred EEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 609 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 609 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+....... ..... .++..+++++.+|.+..+|..++
T Consensus 264 ~W~~~~~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG 299 (377)
T TIGR03300 264 LWKRDASS----YQGPA--VDDNRLYVTDADGVVVALDRRSG 299 (377)
T ss_pred EEeeccCC----ccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence 77665221 11222 24567777778888888887666
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=8.9e-08 Score=119.81 Aligned_cols=261 Identities=9% Similarity=0.045 Sum_probs=163.5
Q ss_pred EEEEEccC-cceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEE
Q 001248 755 SRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 833 (1114)
Q Consensus 755 ~~l~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l 833 (1114)
..++++++ ++.+++-..++.|++|+........-+. .. ......|..-. ..-.....+++++++..|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~---~g---~~G~~dG~~~~------a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS---TG---EEGLRDGSFED------ATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc---CC---CcCCCCCchhc------cccCCCcEEEEeCCCCEE
Confidence 46788764 5666666777889988865321100000 00 00000111100 123346789999998877
Q ss_pred EEEe--CCeEEEEEcCCCccccccCC----------C-------CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE
Q 001248 834 MSAS--GGKISLFNMMTFKTMATFMP----------P-------PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1114)
Q Consensus 834 ~~~~--dg~i~iwd~~~~~~~~~~~~----------~-------~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1114)
.++. ++.|+++|..++. +.++.+ . -.....++|+|+++.++++.+.++.|++||..++..
T Consensus 639 YVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 639 YVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred EEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 6665 5789999987644 222211 0 123467999996677778778889999999987654
Q ss_pred EEeecc---------c------ccCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcccccc--------cc-ccC--CC
Q 001248 895 KSKLKG---------H------SKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNR--------FL-QIP--TG 947 (1114)
Q Consensus 895 ~~~l~~---------h------~~~V~~l~~s~d~~~l-~s~s~D~~v~iwd~~~~~~~~~~--------~~-~~~--~~ 947 (1114)
. .+.+ + -...++|+|+|++++| ++-+.++.|++||+.++...... .+ ... .+
T Consensus 718 ~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 718 R-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred E-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 2 2211 1 1235679999999854 55566789999999875421100 00 000 00
Q ss_pred C--CCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecC-----------CCCcCeeEEEECCCCCEEEEE
Q 001248 948 R--TPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPR-----------ESSAPITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 948 ~--~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-----------~h~~~v~~l~~s~dg~~l~s~ 1013 (1114)
. .........++++++|..+++ ..++.|++||..++......... +.-.....|+++++|+++++-
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD 876 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD 876 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence 0 000123468999999987777 68899999999887665332111 122367899999999988888
Q ss_pred EcCCeEEEEEcCCCee
Q 001248 1014 FLDATVCVFSAANLKL 1029 (1114)
Q Consensus 1014 s~Dg~I~vwd~~~~~~ 1029 (1114)
+.+++|++||+.+++.
T Consensus 877 t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 877 TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCEEEEEECCCCcc
Confidence 8899999999999875
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=1.1e-07 Score=118.97 Aligned_cols=257 Identities=9% Similarity=0.078 Sum_probs=161.6
Q ss_pred ccEEEEeeCCC-EEEEEe-CCeEEEEEcCCCccccccCC--------------CCCCeEEEEEecCCCcEEEEE-eCCCc
Q 001248 821 VPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMP--------------PPPAATFLAFHPQDNNIIAIG-MDDSS 883 (1114)
Q Consensus 821 v~~v~~s~d~~-~l~~~~-dg~i~iwd~~~~~~~~~~~~--------------~~~~i~~l~~sp~d~~~la~g-~~dg~ 883 (1114)
...+++++++. .+++-. ++.|++||... ..+..+.+ .-.....+++++ +++.|+++ ..++.
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHA 647 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCce
Confidence 35688987644 444444 68899999754 43333321 112357899998 66655444 45678
Q ss_pred EEEEEcccceEEEeeccc-----------------ccCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcccccc---cc
Q 001248 884 IQIYNVRVDEVKSKLKGH-----------------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNR---FL 942 (1114)
Q Consensus 884 v~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-d~~~l~s~s~D~~v~iwd~~~~~~~~~~---~~ 942 (1114)
|+++|+.++.. .++.+- -..-++|+|+| ++.++++.+.++.|++||..++...... ..
T Consensus 648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 99999887653 333210 11235799999 5666777788899999998775432100 00
Q ss_pred ccCCCCC---CCCCCceEEEEccCCcEEEE--EeCCeEEEEEcCCCceeeeee-----------cC--------CCCcCe
Q 001248 943 QIPTGRT---PTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWV-----------PR--------ESSAPI 998 (1114)
Q Consensus 943 ~~~~~~~---~~~~~i~~v~fspdg~~l~~--~~d~~i~iwd~~~~~~~~~~~-----------~~--------~h~~~v 998 (1114)
....+.. ........++|+|+|+.|++ ..++.|++||+.++....... .. ..-...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0001110 01124578999999986655 467899999998765321110 00 011235
Q ss_pred eEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCc-ccCCCC--CCCCccceEEEecCCCCCeEEEEeCCCcEEEE
Q 001248 999 THATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA-YLPAGV--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1075 (1114)
Q Consensus 999 ~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1075 (1114)
..++++++|.++++-+.+++|++||..++.......... ....|. ...--.|..+++++ +|+++++-+.++.|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 689999999988888889999999999887664332110 001110 01112456889998 68888888899999999
Q ss_pred eccCCC
Q 001248 1076 EPLESE 1081 (1114)
Q Consensus 1076 ~i~~~~ 1081 (1114)
++.+++
T Consensus 886 d~~~~~ 891 (1057)
T PLN02919 886 DLNKGE 891 (1057)
T ss_pred ECCCCc
Confidence 999876
No 280
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.99 E-value=4.7e-08 Score=96.09 Aligned_cols=193 Identities=19% Similarity=0.120 Sum_probs=135.4
Q ss_pred CCCCceEEEEcC---CCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 357 QGSSPMSMDFHP---VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 357 h~~~v~~v~~sp---dg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
.+..+..+.|.- +|...|+-+...|.|.++.....+.... ++ ++.. ..-....-.++.|++.|.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~ls~--~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------GLSS--KKISVVEALSLDISTSGT 134 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------ccch--hhhhheeeeEEEeeccCc
Confidence 345566666653 4554566677788999988765433321 00 0000 000001245788999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC-CCcceeE-eeccccC
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYI-FEGHEAP 511 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~h~~~ 511 (1114)
.++++..+|.+.+-+..... +....++++|.-..+...|+..... ++.+||.|+.+..||++ .++.+.. .+.|...
T Consensus 135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 99999999999855544432 4444478899999999999987776 79999999999999998 4455544 4568899
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCC
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g 565 (1114)
|.++.-++ +.+.++++|+.|-.|++||.++..+...-....+.|..+..+|.-
T Consensus 213 V~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 213 VVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI 265 (339)
T ss_pred eEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence 98887544 455799999999999999999876665555555677777777653
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.6e-07 Score=105.78 Aligned_cols=156 Identities=10% Similarity=0.023 Sum_probs=97.9
Q ss_pred CCceEEEEcCCCCeEEEEEec---CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~---dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
+......|||||+++++..+. +..|+++|+.+++... +....+.+...+|||||+.|
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l 247 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL 247 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence 477899999999964443333 3569999999887654 22334456778899999988
Q ss_pred EEEe-CC--CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC--CEEEEeCCCCcceeEeecccc
Q 001248 436 GVAY-SR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEA 510 (1114)
Q Consensus 436 as~~-~d--g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~h~~ 510 (1114)
+... .+ ..|.++|+.+++. . .+..+........|+|||+.+++.+. ..+ .|.+.|+.+++..+... ...
T Consensus 248 a~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt~-~g~ 321 (419)
T PRK04043 248 LLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVVF-HGK 321 (419)
T ss_pred EEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCcc-CCC
Confidence 7643 23 4678888877753 3 24334433445689999997544443 333 58888988777533322 111
Q ss_pred CEEEEeeccCCCceEEEEEecC---------CeEEEEEcCCCC
Q 001248 511 PVYSVCPHHKENIQFIFSTALD---------GKIKAWLYDNLG 544 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~ 544 (1114)
. ...| +++|+.++..+.. ..|.+.|+.++.
T Consensus 322 ~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 322 N--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred c--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 1 1355 4556766666543 256666766544
No 282
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.8e-07 Score=104.20 Aligned_cols=113 Identities=12% Similarity=0.318 Sum_probs=84.6
Q ss_pred CCCceEEEEcCCCCeEEEEEec----CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~----dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
...-+-..|+|... ++|+++. .|.|.||- ++|+..... ...- .+++++|+|..-
T Consensus 15 davsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~V-----------------t~P~---hatSLCWHpe~~ 72 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDV-----------------TYPV---HATSLCWHPEEF 72 (1416)
T ss_pred cccccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCccc-----------------ccce---ehhhhccChHHH
Confidence 34445678999888 5777654 46788874 455533210 0111 356699999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 497 (1114)
.|+.|-.-|.+.+|...+.+. ......|..+|..+.||++|. .++|+..-|.|.+|...
T Consensus 73 vLa~gwe~g~~~v~~~~~~e~---htv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 73 VLAQGWEMGVSDVQKTNTTET---HTVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HHhhccccceeEEEecCCcee---eeeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEee
Confidence 999999999999999887542 224557999999999999999 89999999999999865
No 283
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.94 E-value=6.1e-09 Score=124.91 Aligned_cols=198 Identities=19% Similarity=0.351 Sum_probs=154.9
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+-..|.++.=+|...+ .+||+.||.|++|.+..+..+.. |+ -.|. ..|+.+.|+.+|..+.
T Consensus 2207 ~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred ccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCcee
Confidence 4578899999999996 88999999999999998877653 22 1233 7899999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEec---CCCCEEEEeCCCC-cceeEeeccccCE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNG-AKQYIFEGHEAPV 512 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~---~d~~i~iwd~~~~-~~~~~~~~h~~~v 512 (1114)
.+..||.+.+|.+.. +.....+.|+....+.+|-. . .+++++ .++.+.+||..-. ..-..-..|.+.+
T Consensus 2268 i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ga 2339 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGA 2339 (2439)
T ss_pred eeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCCc
Confidence 999999999999883 23336778999999999986 3 466665 4678999996532 2112227899999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
+++++.|.. +++++||.+|.|++||++..+.+..+.. ++ ...+++++
T Consensus 2340 T~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~------------------------------~~-~~~~f~~~ 2386 (2439)
T KOG1064|consen 2340 TVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA------------------------------LD-TREYFVTG 2386 (2439)
T ss_pred eEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh------------------------------hh-hhheeecc
Confidence 999976655 7999999999999999987666554432 11 12369999
Q ss_pred eCCCeEEEEECCCcceEEEecc
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
+..|.++||++.....+..+..
T Consensus 2387 ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2387 SSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcccceEEEEccccchhhcCch
Confidence 9999999999998877777753
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=4.3e-09 Score=111.06 Aligned_cols=210 Identities=13% Similarity=0.193 Sum_probs=154.1
Q ss_pred CCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC-------CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
+|...|..++--.+.+.+++++ |.+|++|.++. ..+..+++.|..+|..+.|-. +.+.++++ ||-|++|
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~giHlW 809 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGIHLW 809 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcceee
Confidence 4888899887666777777777 99999999863 335677889999999999998 77777754 8899999
Q ss_pred EcccceEEEeecc--cccCeeEEEEcC--CCCEEEE-EeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc
Q 001248 888 NVRVDEVKSKLKG--HSKRITGLAFSH--ALNVLVS-SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 888 d~~~~~~~~~l~~--h~~~V~~l~~s~--d~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp 962 (1114)
|.--++++..+.. ..+.+..+..-+ |...+.. ++...+|+++|....+-.....+....+. ...+++++..+
T Consensus 810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P---na~~R~iaVa~ 886 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP---NALTRAIAVAD 886 (1034)
T ss_pred cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC---chheeEEEecc
Confidence 9988877764422 223344444333 3444444 47889999999988654333222222222 14678999999
Q ss_pred CCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEE-EEcCCCeeeEEeC
Q 001248 963 DQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV-FSAANLKLRCRIN 1034 (1114)
Q Consensus 963 dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~v-wd~~~~~~~~~~~ 1034 (1114)
.|++++++ +.|.|.+.|.++|+.+..|.+- .-....++ .|..+.|+....|.++.| |...+|....+.+
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 99999995 8999999999999999888631 22233333 567778888889999999 9999998887766
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.89 E-value=5.6e-07 Score=89.32 Aligned_cols=207 Identities=15% Similarity=0.147 Sum_probs=139.2
Q ss_pred EEEeeCCCEEEEEeCCeEEEEEcCCC--ccccc---cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee
Q 001248 824 FALSKNDSYVMSASGGKISLFNMMTF--KTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 824 v~~s~d~~~l~~~~dg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l 898 (1114)
++.+.||+.||+..|..|.|=..++. ..+.+ -+.....-+.++||| |+.+||.+...|+|++||+....+ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 57789999999999998888766532 11111 222334568899999 999999999999999999985433 233
Q ss_pred cc-------cccCeeEEEEcCCC------CEEEEEeCCCcEEEEeCCCCccccccccc--cCCCCCCCCCCceEEEEccC
Q 001248 899 KG-------HSKRITGLAFSHAL------NVLVSSGADSQLCVWSSDGWEKQKNRFLQ--IPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 899 ~~-------h~~~V~~l~~s~d~------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~i~~v~fspd 963 (1114)
.. -..+|.++.|.+-. ..|.+-..+|.++=|-+..+......... .+..+. +..|.++.++|.
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y--p~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY--PHGINSAVYHPK 158 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC--CCceeEEEEcCC
Confidence 22 23567777776431 24667778888887776432211111111 111222 258999999999
Q ss_pred CcEEEEEe----C--------CeEEEEEcCCCceeee---------------------e-----ec-CCCCcCeeEEEEC
Q 001248 964 QIHFLVVH----E--------TQLAIFETTKLECVKQ---------------------W-----VP-RESSAPITHATFS 1004 (1114)
Q Consensus 964 g~~l~~~~----d--------~~i~iwd~~~~~~~~~---------------------~-----~~-~~h~~~v~~l~~s 1004 (1114)
.++|++++ + -.+..|.+-++..-.. . .. ......|..|..|
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS 238 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS 238 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC
Confidence 99988842 1 1466777544321100 0 00 1125678999999
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 1005 CDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 1005 ~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
|||+.||+...+|.|.+|++.+.++.....
T Consensus 239 Pdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 239 PDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 999999999999999999999999988776
No 286
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.88 E-value=2.3e-08 Score=102.98 Aligned_cols=171 Identities=17% Similarity=0.133 Sum_probs=115.6
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
-.++.+.++++|+ |+|++..+....++++...... .+.++.. .+..-...++.+..+......-.+
T Consensus 63 ~a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~---------~v~~~~~ai~~~~~~~sv~v~dka 128 (390)
T KOG3914|consen 63 LAPALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS---------CVPKRPTAISFIREDTSVLVADKA 128 (390)
T ss_pred ccccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe---------ecccCcceeeeeeccceEEEEeec
Confidence 3456677788888 6888888888778777654431 1111100 111112234444433332222233
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEEEEee
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCP 517 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~ 517 (1114)
++...+.+|....+.+. .+-||-..+..|+|+||++ +++|+..|..|+|-....--.+..+ -||...|..++.
T Consensus 129 gD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl 202 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL 202 (390)
T ss_pred CCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeee
Confidence 45556667776654433 3568999999999999999 7999999999999877665555544 579999999986
Q ss_pred ccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC
Q 001248 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 552 (1114)
Q Consensus 518 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 552 (1114)
... ..|+++|.|+++++||+.+++.+.++...
T Consensus 203 ~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 203 TDN---YLLLSGSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred ccC---ceeeecCCCCcEEEEecccCCcccccchh
Confidence 432 57999999999999999999887655443
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.83 E-value=2.7e-08 Score=109.08 Aligned_cols=303 Identities=13% Similarity=0.155 Sum_probs=186.4
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCC--CCCeeEEEEcCCC
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP--GVSVNRVIWSPDG 432 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h--~~~V~~l~~spdg 432 (1114)
+.-..++.++..+|.|+- +|+++.-| +.+-|+...-... .+..| .-.|-.+.|||..
T Consensus 21 l~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~pp-------------------r~l~h~tpw~vad~qws~h~ 79 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPP-------------------RWLHHITPWQVADVQWSPHP 79 (1081)
T ss_pred EEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCc-------------------eeeeccCcchhcceecccCC
Confidence 345678899999999997 77766554 4445554321110 11112 2357778888853
Q ss_pred C--eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc-ceeEeeccc
Q 001248 433 S--LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHE 509 (1114)
Q Consensus 433 ~--~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~h~ 509 (1114)
. +-++........+|++.....-.....+.||...|+.+.|.|.... ++++++.|-.+..||+++.. .+..+....
T Consensus 80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWR 158 (1081)
T ss_pred CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeeccc
Confidence 3 3344444555779998754443444468899999999999998887 79999999999999998754 456665555
Q ss_pred cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe-eeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
..-..+.|+... + .+.+.+..+.|.+||.+.+... ..+..+...+..+.|..-- ...
T Consensus 159 s~asqVkwnyk~-p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~--------------------~s~ 216 (1081)
T KOG0309|consen 159 SAASQVKWNYKD-P-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK--------------------YSE 216 (1081)
T ss_pred ccCceeeecccC-c-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhh--------------------hhh
Confidence 666778887654 3 3445566778999999977544 3555555555555543321 124
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-----------CCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-----------DGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-----------d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
+.+.+.|++|+.||.............. ..+|..-.+.| .+..+-.-.-+.....|+..++.+.+..+
T Consensus 217 ~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F 295 (1081)
T KOG0309|consen 217 IMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF 295 (1081)
T ss_pred hcccCCCCceeeecccccccccceeccc-cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence 7888999999999986543221111111 11233334444 22222222223444556666777788889
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
.||.+.+..-. +...+ .-+.......-.|++=+.|..+++|.+..
T Consensus 296 ~GH~D~V~eFl------WR~r~-------------------------e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 296 VGHDDVVLEFL------WRKRK-------------------------ECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCcchHHHHHh------hhhcc-------------------------cccCCCCccceeEEEeecCCceEeeeccH
Confidence 99887654210 00000 00000111234688999999999999864
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.82 E-value=3.8e-08 Score=101.39 Aligned_cols=158 Identities=13% Similarity=0.114 Sum_probs=109.6
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE----EeCCeEEEEEc
Q 001248 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQLAIFET 980 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~----~~d~~i~iwd~ 980 (1114)
...+..++++++||++..+....++++..... ...+........ .-+.+.|..+.....+ +....+.+|..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~----~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPK----RPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeeccc----CcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 44566778888888888888877777766443 222222222211 2345556555554444 24456777777
Q ss_pred CCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCC
Q 001248 981 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1060 (1114)
Q Consensus 981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~ 1060 (1114)
..+.+...+ ||-+.++.++||||+++|+++..|..|+|-.+..-..+..+- -||..- |. .++.- ++
T Consensus 140 ~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc------lGH~eF-VS--~isl~--~~ 205 (390)
T KOG3914|consen 140 DSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC------LGHKEF-VS--TISLT--DN 205 (390)
T ss_pred cccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc------cccHhh-ee--eeeec--cC
Confidence 766555443 899999999999999999999999999998887766554433 344333 66 34443 46
Q ss_pred CeEEEEeCCCcEEEEeccCCC
Q 001248 1061 NEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1061 ~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+.|++|+.|++|++||+.+|+
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred ceeeecCCCCcEEEEecccCC
Confidence 789999999999999999999
No 289
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.80 E-value=2.4e-08 Score=119.94 Aligned_cols=200 Identities=15% Similarity=0.228 Sum_probs=153.7
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
+..|-..|.++.=+|...+-++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|+ .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 3445568899999999999999999999999999998877655443 33 8899999999999 678888899999999
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEEEEe---cCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeee
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
+. .+.....+.|......+.|-. ..+++.+ .++.+.+||...... ...+...
T Consensus 2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~--------------------~s~v~~~ 2334 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPM--------------------NSLVHTC 2334 (2439)
T ss_pred cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcc--------------------cceeeee
Confidence 66 666777788888888777644 3566664 367899998753211 1222234
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~ 652 (1114)
+++..+++++-|....+++|+.+|.|++||++..+.++.+.. +. ...++++|+..|.++||++... .
T Consensus 2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~-~ 2401 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEF-G 2401 (2439)
T ss_pred cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcccc-c
Confidence 455667777777778999999999999999998887776653 23 4578999999999999998766 4
Q ss_pred ceeec
Q 001248 653 LLRTF 657 (1114)
Q Consensus 653 ~~~~~ 657 (1114)
.+..+
T Consensus 2402 ll~~~ 2406 (2439)
T KOG1064|consen 2402 LLHTF 2406 (2439)
T ss_pred hhhcC
Confidence 44443
No 290
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.78 E-value=1.1e-06 Score=92.71 Aligned_cols=225 Identities=13% Similarity=0.106 Sum_probs=139.7
Q ss_pred CCeEEEEEcCCCccccccCCC--CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCC
Q 001248 838 GGKISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 915 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 915 (1114)
+|+|..||..+++.+...... .....+..+ + ++..+++++.++.|+.||..+|+.+..... ...+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 578999999999888776531 122222233 2 345666678999999999999998877764 23222222 22455
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCC
Q 001248 916 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES 994 (1114)
Q Consensus 916 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h 994 (1114)
.++.++.|+.|..+|..+++..-.......+.. ..........++..++++ .++.|..+|.++|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 677777888999999988876433111111110 111222333346666664 599999999999999877764221
Q ss_pred C--c------CeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEE
Q 001248 995 S--A------PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1066 (1114)
Q Consensus 995 ~--~------~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~ 1066 (1114)
. . .+..-....++ .++.++.++.+.-+|+.+++.+-+.. ..+ .. . .... ++..|+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~~ 218 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYVT 218 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEEE
Confidence 1 1 11222333345 77777778854444999999664322 111 11 1 1223 46788888
Q ss_pred eCCCcEEEEeccCCCCccc
Q 001248 1067 LSDGGVHVFEPLESEGKWG 1085 (1114)
Q Consensus 1067 ~~Dg~v~vW~i~~~~~~~~ 1085 (1114)
+.++.|..||+.+|+..|.
T Consensus 219 ~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCCCCEEeE
Confidence 8999999999999998774
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.77 E-value=6e-06 Score=93.87 Aligned_cols=310 Identities=11% Similarity=0.060 Sum_probs=170.5
Q ss_pred EEEEecCCCCEEEEeCCCCcceeEeecccc--CEE-----EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCC
Q 001248 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEA--PVY-----SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 553 (1114)
Q Consensus 481 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 553 (1114)
.++.++.++.+..+|.++|+.+....-... ... .+.-.+.-++..++.++.++.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 466677788999999999998876542210 000 0000011123467788889999999999988877665433
Q ss_pred CeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCC---CcCeEEEcCCC
Q 001248 554 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDG 630 (1114)
Q Consensus 554 ~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~s~d~ 630 (1114)
....+..+ .+..++.++.++.++.+|..+|+.+.......... ...+... .+
T Consensus 151 ~~~ssP~v-----------------------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~ 205 (394)
T PRK11138 151 EALSRPVV-----------------------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AF 205 (394)
T ss_pred ceecCCEE-----------------------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--EC
Confidence 21111111 12347778889999999999999988876432100 0011111 23
Q ss_pred CEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccc
Q 001248 631 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS 710 (1114)
Q Consensus 631 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1114)
..++.++.+|.+..+|..+|+...+. ..... .+
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~-~~~~~---------------~~------------------------------- 238 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQ-RISQP---------------TG------------------------------- 238 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhhee-ccccC---------------CC-------------------------------
Confidence 45677788899999998888432211 00000 00
Q ss_pred cCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCC
Q 001248 711 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 790 (1114)
Q Consensus 711 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 790 (1114)
.. ..-+++++ ...++ + .+..+++++.+|.+..+|..+++
T Consensus 239 ----------~~-~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~------ 277 (394)
T PRK11138 239 ----------AT-EIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ------ 277 (394)
T ss_pred ----------cc-chhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC------
Confidence 00 00000000 00010 0 12335555566666666554221
Q ss_pred ccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCC-CCeEEEEEe
Q 001248 791 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFH 868 (1114)
Q Consensus 791 ~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s 868 (1114)
.+|....+. ...+.. ++..+..++ +|.+..+|..+++.+....... ....+.++.
T Consensus 278 -------~~W~~~~~~--------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~ 334 (394)
T PRK11138 278 -------IVWKREYGS--------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY 334 (394)
T ss_pred -------EEEeecCCC--------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE
Confidence 134322110 111222 334444444 8999999999887765433211 122223332
Q ss_pred cCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE-EEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 869 PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 869 p~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
+..|++++.||.|+..|..+|+.+...+-....+.+ ..+ .+..|+.++.||.|..++.
T Consensus 335 ---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 ---NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ---CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 346777899999999999999988776543333332 222 2457888899999887754
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.76 E-value=1.7e-06 Score=84.00 Aligned_cols=234 Identities=11% Similarity=0.030 Sum_probs=156.3
Q ss_pred CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCc
Q 001248 629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1114)
Q Consensus 629 d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1114)
...+|+.|+.-|.+.+|...+.....+....+...+... -
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~----------------------------------------~ 122 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV----------------------------------------K 122 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhh----------------------------------------h
Confidence 456889999999999999887644444433332211100 0
Q ss_pred cccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCC
Q 001248 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788 (1114)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 788 (1114)
........+..++.|.++++.++........... ..-.+.++++++|++++++.+....|..|.+........
T Consensus 123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-------~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~ 195 (344)
T KOG4532|consen 123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-------QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE 195 (344)
T ss_pred hhcccccceeeccCCcceeEEEEecCcccceeec-------cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceee
Confidence 0111233456778888899888876443332221 112378899999999999999999999998865322110
Q ss_pred CCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccc-----ccCCCCCCe
Q 001248 789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA-----TFMPPPPAA 862 (1114)
Q Consensus 789 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~-----~~~~~~~~i 862 (1114)
..... .....--+..|+.....+|++. ||++.|||+....... +-..|.+.+
T Consensus 196 --------------------~~~~a--~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~ 253 (344)
T KOG4532|consen 196 --------------------NIYEA--PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAF 253 (344)
T ss_pred --------------------eeEec--ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCce
Confidence 10011 1334445778999999999999 9999999998654332 234588899
Q ss_pred EEEEEecCCC--cEEEEEeCCCcEEEEEcccceEEEee-------ccccc-CeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 863 TFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDEVKSKL-------KGHSK-RITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 863 ~~l~~sp~d~--~~la~g~~dg~v~iwd~~~~~~~~~l-------~~h~~-~V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
+.+.|++ .| .+|...-.-+.+.+.|+.+++..+.+ ..|.. .|+.-.|+.++.-+.+.+++. +.-|++.
T Consensus 254 R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~ 331 (344)
T KOG4532|consen 254 RVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNIL 331 (344)
T ss_pred EEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheeecc
Confidence 9999998 54 46666656678999999987644433 22333 388899998888877777665 6778777
Q ss_pred C
Q 001248 933 G 933 (1114)
Q Consensus 933 ~ 933 (1114)
+
T Consensus 332 s 332 (344)
T KOG4532|consen 332 S 332 (344)
T ss_pred c
Confidence 6
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.75 E-value=5.6e-06 Score=82.39 Aligned_cols=216 Identities=15% Similarity=0.146 Sum_probs=137.4
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEcccc--eEEEee---cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 001248 865 LAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKL---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 939 (1114)
Q Consensus 865 l~~sp~d~~~la~g~~dg~v~iwd~~~~--~~~~~l---~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~ 939 (1114)
++.+. +|++||+- .|..|.|-..+.. ..+.+. +...-.-..++||||+..||.+...|+|+++|+...+....
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 45666 88888865 5777888765542 233333 22333467899999999999999999999999987544322
Q ss_pred cccccCCCCCCCCCCceEEEEccCC-------cEEEEEeCCeEEEEEcCC-----CceeeeeecCC-CCcCeeEEEECCC
Q 001248 940 RFLQIPTGRTPTAQSDTRVQFHQDQ-------IHFLVVHETQLAIFETTK-----LECVKQWVPRE-SSAPITHATFSCD 1006 (1114)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~v~fspdg-------~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~-h~~~v~~l~~s~d 1006 (1114)
.......+ ....+|..+.|-+-. .+|+...+|.++-|-+.. .+...++.... +...|.++.+.|.
T Consensus 81 ~p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 81 PPAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred CcccccCC--ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 22111111 122467777776532 556668888888777532 23333444333 3778999999999
Q ss_pred CCEEEEEEc----CC-------eEEEEEcCCCeeeEEeCCC---------------------cccCCCCCCCCccceEEE
Q 001248 1007 SQLVYACFL----DA-------TVCVFSAANLKLRCRINPS---------------------AYLPAGVSSSNVHPLVIA 1054 (1114)
Q Consensus 1007 g~~l~s~s~----Dg-------~I~vwd~~~~~~~~~~~~~---------------------~~~~~~~~~~~v~~~~~~ 1054 (1114)
.++|++|+. |+ -+..|.+-++..-...-.. .+...+.....|. .+.
T Consensus 159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmS 236 (282)
T PF15492_consen 159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMS 236 (282)
T ss_pred CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEE
Confidence 998877663 11 3677877655443321100 0000111122244 677
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeccCCC--CcccCC
Q 001248 1055 AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVP 1087 (1114)
Q Consensus 1055 ~~~~d~~~l~s~~~Dg~v~vW~i~~~~--~~~~~~ 1087 (1114)
-+| ||..|++.+.+|.|.+|++++-. ..|...
T Consensus 237 lSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 237 LSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 788 79999999999999999999866 666653
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.74 E-value=1.4e-05 Score=90.81 Aligned_cols=211 Identities=9% Similarity=0.006 Sum_probs=120.7
Q ss_pred CCeEEEEEcCCCccccccCCCCCC-----eEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccccc-------Ce
Q 001248 838 GGKISLFNMMTFKTMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-------RI 905 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~-------~V 905 (1114)
++.+.-+|..+|+.+......... ..+-... ++ .++.++.+|.+..+|..+|+.+........ ..
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 566666666666665544322110 0111122 23 466677889999999999887655431100 01
Q ss_pred eEEEEcC--CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCC
Q 001248 906 TGLAFSH--ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 983 (1114)
Q Consensus 906 ~~l~~s~--d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~ 983 (1114)
..+.-+| .+..++.++.++.+..+|..+++..-.... + ....+.. .++..++.+.++.+..+|..++
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----G------SVNDFAV-DGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----C------CccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence 1111122 245677778899999999998764321111 1 1111111 2344444478899999999998
Q ss_pred ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeE
Q 001248 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1063 (1114)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1063 (1114)
+.+-...... .....+..+ .+.+|+.++.||.|++.|..+|+.+.+.+. ..+ . +.. ..... +..|
T Consensus 315 ~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~----~~~--~--~~s-~P~~~---~~~l 379 (394)
T PRK11138 315 VELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV----DSS--G--FLS-EPVVA---DDKL 379 (394)
T ss_pred cEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc----CCC--c--cee-CCEEE---CCEE
Confidence 7654322111 111222222 355778899999999999999999887752 111 0 110 11111 3578
Q ss_pred EEEeCCCcEEEEec
Q 001248 1064 ALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1064 ~s~~~Dg~v~vW~i 1077 (1114)
++++.||.|+.++.
T Consensus 380 ~v~t~~G~l~~~~~ 393 (394)
T PRK11138 380 LIQARDGTVYAITR 393 (394)
T ss_pred EEEeCCceEEEEeC
Confidence 88999999998875
No 295
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.74 E-value=7e-06 Score=84.65 Aligned_cols=239 Identities=15% Similarity=0.197 Sum_probs=148.7
Q ss_pred eEEEEcCCCCeEEEEEecCCc-EEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe-
Q 001248 362 MSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY- 439 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~-v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~- 439 (1114)
-.++.+|+....++.+-.-|+ ..+||..+++...... .-....|.|| -.||+||++|.+.=
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTEn 70 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTEN 70 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEecc
Confidence 467888866656777777664 7899999998876311 2222356677 68999999999863
Q ss_pred ----CCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC----------------CCCEEEEeCCCC
Q 001248 440 ----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----------------DKTIKVWDATNG 499 (1114)
Q Consensus 440 ----~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~----------------d~~i~iwd~~~~ 499 (1114)
..|.|-|||... .+....++..|.-.-..+.+.|||+.|+++-|+- +.++.+-|..+|
T Consensus 71 d~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 71 DYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred ccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 358899999993 2444557777777778899999998655555542 345666777888
Q ss_pred cceeE--e--eccccCEEEEeeccCCCceEEEEEecCCe-------EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeE
Q 001248 500 AKQYI--F--EGHEAPVYSVCPHHKENIQFIFSTALDGK-------IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 500 ~~~~~--~--~~h~~~v~~~~~~~~~~~~~l~s~~~d~~-------i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
+.+.. + .-|...|.-+++.. +|..++..-..|. +-+++.. +. ...+...++..
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~----------~~~~~~p~~~~-- 212 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHRRG--GA----------LRLLPAPEEQW-- 212 (305)
T ss_pred ceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEcCC--Cc----------ceeccCChHHH--
Confidence 87765 4 34777888888654 3333333322221 1111111 11 11111111000
Q ss_pred EeeecccceeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEE
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 643 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 643 (1114)
..-.+-+..++++.++.++++.+ ..+.+.+||..+++.+...... .+..++..+++ ++++.+ .|.+.
T Consensus 213 --~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 213 --RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred --HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCC-CccEE
Confidence 01122455667777776675555 7889999999999998877644 35667777766 444433 35543
No 296
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=6.5e-08 Score=102.35 Aligned_cols=274 Identities=13% Similarity=0.136 Sum_probs=169.4
Q ss_pred cCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCC
Q 001248 711 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 790 (1114)
Q Consensus 711 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 790 (1114)
..+.+.+++++.|.++++|.+...........-.+.-..|...|.++.|-.+-+.+++ .||.|.+||.
T Consensus 744 idNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDP---------- 811 (1034)
T KOG4190|consen 744 IDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDP---------- 811 (1034)
T ss_pred cccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecc----------
Confidence 3466788999999999999998644433322222333558999999999988876654 4666777653
Q ss_pred ccccccccccCCCCCccccccCCCCCCCCCccEEEEee--CCCEEEEE-e-CCeEEEEEcCCCccccccC-----CCCCC
Q 001248 791 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSA-S-GGKISLFNMMTFKTMATFM-----PPPPA 861 (1114)
Q Consensus 791 ~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~--d~~~l~~~-~-dg~i~iwd~~~~~~~~~~~-----~~~~~ 861 (1114)
-.|+++....... ..+.+..+..-+ +...+..+ + ..+|+++|...++....++ +....
T Consensus 812 ------------Figr~Laq~~dap-k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 812 ------------FIGRLLAQMEDAP-KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred ------------cccchhHhhhcCc-ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 3344333211111 122233333323 34445555 3 6899999999887665553 34466
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEE-EeCCCCcccccc
Q 001248 862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV-WSSDGWEKQKNR 940 (1114)
Q Consensus 862 i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~i-wd~~~~~~~~~~ 940 (1114)
++++++.+ .|+.+|.|-.+|.|.+.|..+|+.+..++........++- |..+.|+....|.++.+ |....+......
T Consensus 879 ~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 879 TRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred eeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 89999999 8999999999999999999999999988877666655554 55678888888999988 876654321110
Q ss_pred ccccCCCCCCCCCCceEEEEccCCcEEEEEeCC-eEEEEEcCC----CceeeeeecCCCCcCeeEEEECCCCCEEEEEEc
Q 001248 941 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET-QLAIFETTK----LECVKQWVPRESSAPITHATFSCDSQLVYACFL 1015 (1114)
Q Consensus 941 ~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~-~i~iwd~~~----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~ 1015 (1114)
.-.....|.. -.-|--|+++..| .+.+|--.. ...+..+..+...+..++++.-|=..-++.|+.
T Consensus 957 kpppepahfl----------qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne 1026 (1034)
T KOG4190|consen 957 KPPPEPAHFL----------QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNE 1026 (1034)
T ss_pred CCCCcchhhh----------hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCC
Confidence 0000001110 1113334443222 344443111 111222233334667888888886666667888
Q ss_pred CCeEEE
Q 001248 1016 DATVCV 1021 (1114)
Q Consensus 1016 Dg~I~v 1021 (1114)
.|.|.+
T Consensus 1027 ~G~IaL 1032 (1034)
T KOG4190|consen 1027 HGAIAL 1032 (1034)
T ss_pred CCceee
Confidence 888875
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=4.5e-06 Score=94.12 Aligned_cols=209 Identities=8% Similarity=0.052 Sum_probs=127.9
Q ss_pred eEEEEEcCCCccccccCCCCCCeEEEEEecCCCc-EEEEEeC---CCcEEEEEcccceEEEeecccccCeeEEEEcCCCC
Q 001248 840 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMD---DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN 915 (1114)
Q Consensus 840 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~la~g~~---dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~ 915 (1114)
.|.+-|..... .+.+.... .+....|+| ||+ .++..+. +..|+++|+.+++..... ...+......|||||+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 45555554333 33233233 678899999 776 3665433 357999999888654433 3455566788999998
Q ss_pred EEEE-EeCC--CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCC----eEEEEEcCCCceeee
Q 001248 916 VLVS-SGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECVKQ 988 (1114)
Q Consensus 916 ~l~s-~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~----~i~iwd~~~~~~~~~ 988 (1114)
.|+. .+.+ ..|.++++.+++... +....+ ......|+|||+.|+...+. .|.+.|+.+++..+.
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~---LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ---ITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE---cccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 7764 3334 457777887754321 111111 12445899999998885443 788999988876544
Q ss_pred eecCCCCcCeeEEEECCCCCEEEEEEcC---------CeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 989 WVPRESSAPITHATFSCDSQLVYACFLD---------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 989 ~~~~~h~~~v~~l~~s~dg~~l~s~s~D---------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
... +. ....|||||++|+..+.. ..|++.|+.++... .+... + . .. ...|+| |
T Consensus 317 t~~-g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~-~~--~p~~SP-D 378 (419)
T PRK04043 317 VFH-GK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V-NQ--FPRFSS-D 378 (419)
T ss_pred ccC-CC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C-cC--CeEECC-C
Confidence 321 21 124899999998876654 36888899888753 33311 1 1 11 478999 6
Q ss_pred CCeEEEEeCC-Cc--EEEEeccC
Q 001248 1060 PNEFALGLSD-GG--VHVFEPLE 1079 (1114)
Q Consensus 1060 ~~~l~s~~~D-g~--v~vW~i~~ 1079 (1114)
|+.|+....+ +. +.+.++..
T Consensus 379 G~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 379 GGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCEEEEEEccCCcEEEEEEecCC
Confidence 7766654433 33 45555543
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.69 E-value=1.2e-05 Score=84.91 Aligned_cols=220 Identities=14% Similarity=0.071 Sum_probs=139.2
Q ss_pred cEEEEee-CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec
Q 001248 822 PCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 822 ~~v~~s~-d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
.+++|.+ ++.++++-. .+.|..|+..++.... +.... ...+++...++.++++ .. +.+.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~-~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVA-DS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEE-ET-TCEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEE-Ec-CceEEEecCCCcEEEEee
Confidence 3578887 555555554 7899999998765533 22112 7788888326665554 44 455666998885443332
Q ss_pred c-----cccCeeEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcE
Q 001248 900 G-----HSKRITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 966 (1114)
Q Consensus 900 ~-----h~~~V~~l~~s~d~~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~ 966 (1114)
. .....+.+++.++|++.++.... |.|..++.. ++.. ...... .....++|+||++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~--~~~~~~-------~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT--VVADGL-------GFPNGIAFSPDGKT 147 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE--EEEEEE-------SSEEEEEEETTSSE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE--EEecCc-------ccccceEECCcchh
Confidence 2 34568899999999988876654 446666666 2221 111111 24589999999998
Q ss_pred EEE--EeCCeEEEEEcCCCce----eeee-ecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCccc
Q 001248 967 FLV--VHETQLAIFETTKLEC----VKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1039 (1114)
Q Consensus 967 l~~--~~d~~i~iwd~~~~~~----~~~~-~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~ 1039 (1114)
|.+ +..+.|..|++..... .+.+ ....-.+..-.+++..+|.+.++....+.|.+++-+ |+++..+. +
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~----~ 222 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE----L 222 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-----
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc----C
Confidence 876 3677899888863322 1222 111212347889999999988888889999999977 99998887 4
Q ss_pred CCCCCCCCccceEEEecCCCCCeEEEEe
Q 001248 1040 PAGVSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 1040 ~~~~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
| . -.+++++|...|.+.|++.+
T Consensus 223 p-~-----~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 223 P-V-----PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp S-S-----SSEEEEEEESTTSSEEEEEE
T ss_pred C-C-----CCEEEEEEECCCCCEEEEEe
Confidence 4 1 23568999644556555443
No 299
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.68 E-value=3.1e-06 Score=82.34 Aligned_cols=242 Identities=13% Similarity=0.085 Sum_probs=152.2
Q ss_pred CEEEEEe-CCeEEEEEcCCCccc-cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEE
Q 001248 831 SYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 908 (1114)
Q Consensus 831 ~~l~~~~-dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 908 (1114)
-+||.|+ .|...+|...+.+.. .....+...|+-+.=.-+...-+..++.|.++++.++.-+.....+.-..-.++++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 4777776 799999998865433 22333444333221111122345667888888888887654332222122238899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceee
Q 001248 909 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK 987 (1114)
Q Consensus 909 ~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~ 987 (1114)
++++|++++++.+....|..|.++........ +.. .+....-.+..|+.....+|+ ..||.+.|||++......
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~---~~~--a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN---IYE--APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeee---eEe--cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 99999999999999999999999863321111 111 111234478899999888888 599999999998765433
Q ss_pred eee---cCCCCcCeeEEEECCCCCE--EEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCe
Q 001248 988 QWV---PRESSAPITHATFSCDSQL--VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1062 (1114)
Q Consensus 988 ~~~---~~~h~~~v~~l~~s~dg~~--l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~ 1062 (1114)
... .+.|.+.+..+.|++.|.. |+..-.-+.+.|-|+.+++....+.+....-..|...-+. ...|.. ++.-
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n~s 316 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-ENES 316 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CCcc
Confidence 222 2458999999999987753 4444455789999999998877766443332222223233 455655 3444
Q ss_pred EEEEeCCCcEEEEeccCCC
Q 001248 1063 FALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1063 l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+.+..+ -.+.-|++....
T Consensus 317 ~~v~~e-~~~ae~ni~srs 334 (344)
T KOG4532|consen 317 NDVKNE-LQGAEYNILSRS 334 (344)
T ss_pred cccccc-hhhheeeccccc
Confidence 444433 345667765543
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.65 E-value=9.3e-06 Score=83.73 Aligned_cols=186 Identities=12% Similarity=0.154 Sum_probs=127.2
Q ss_pred EEEEeeCCCEEEEEe-C-----CeEEEEEcC-CCccccccCCCCCCeEEEEEecCCCcEEEEEe----------------
Q 001248 823 CFALSKNDSYVMSAS-G-----GKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---------------- 879 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~-d-----g~i~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~---------------- 879 (1114)
.-+||+||++|.+.- | |.|-|||.. +.+.+.++..+.-....+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 368999999999884 2 779999998 6777788887777777888999 886666653
Q ss_pred --CCCcEEEEEcccceEEEe--e--cccccCeeEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCccccccccccCC
Q 001248 880 --DDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQKNRFLQIPT 946 (1114)
Q Consensus 880 --~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~~l~s~s~D~-------~v~iwd~~~~~~~~~~~~~~~~ 946 (1114)
.+-++-..|..+|+++.+ + ..|..+|..+++.++|..++..-..| -|-+++-.. .. ..+....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~--~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--AL--RLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cc--eeccCCh
Confidence 223456667788988876 4 34888999999999987666543332 133333322 10 0111110
Q ss_pred CC-CCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeE
Q 001248 947 GR-TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019 (1114)
Q Consensus 947 ~~-~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I 1019 (1114)
.. ....+.+-+|+++++|.+++++ ..+.+.+||..++..+.... -..+..++-.+++ ++++.+ .|.+
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCC-CccE
Confidence 00 0112467899999999998874 66789999999999988765 3456777777777 666554 4443
No 301
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.64 E-value=9.1e-05 Score=72.15 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=96.9
Q ss_pred EEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec
Q 001248 471 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 550 (1114)
Q Consensus 471 v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 550 (1114)
+...+|.+. +++.|+..+.+.--|..+|+.+..-. -...|.+-+.. -|++++.|+..|.+.+.+..++++...+.
T Consensus 16 LVV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 16 LVVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred EEEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeee
Confidence 445566665 78889999999999999998775422 22334333322 12589999999999999999887766543
Q ss_pred CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-C
Q 001248 551 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-D 629 (1114)
Q Consensus 551 ~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d 629 (1114)
..+.--. ....++++..+.+++.|+..+..|..+..++...+..+. ...+-++.+ +
T Consensus 91 ~~~~vk~---------------------~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~ 147 (354)
T KOG4649|consen 91 ILETVKV---------------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGD 147 (354)
T ss_pred ehhhhcc---------------------ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCC
Confidence 3221101 123455666899999999999999999999998876654 234455566 4
Q ss_pred CCEEEEEeCCCcEEEE
Q 001248 630 GCLLAVSTNDNGIKIL 645 (1114)
Q Consensus 630 ~~~l~~~~~dg~i~iw 645 (1114)
+. |+.+...|.+.--
T Consensus 148 ~s-ly~a~t~G~vlav 162 (354)
T KOG4649|consen 148 GS-LYAAITAGAVLAV 162 (354)
T ss_pred ce-EEEEeccceEEEE
Confidence 44 4444444554433
No 302
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.62 E-value=1.6e-07 Score=103.17 Aligned_cols=257 Identities=12% Similarity=0.165 Sum_probs=164.3
Q ss_pred CceEEEEcCCC--CeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCCeEE
Q 001248 360 SPMSMDFHPVQ--QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFG 436 (1114)
Q Consensus 360 ~v~~v~~spdg--~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la 436 (1114)
.|-.+.|||.- .+ -++......-.+|++....... ..-++.||+..|+.+.|.| .-..||
T Consensus 69 ~vad~qws~h~a~~~-wiVsts~qkaiiwnlA~ss~~a----------------Ief~lhghsraitd~n~~~q~pdVla 131 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPY-WIVSTSNQKAIIWNLAKSSSNA----------------IEFVLHGHSRAITDINFNPQHPDVLA 131 (1081)
T ss_pred hhcceecccCCCCce-eEEecCcchhhhhhhhcCCccc----------------eEEEEecCccceeccccCCCCCccee
Confidence 35566777643 22 3333445556688876433222 1125789999999999999 456789
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeeccccCEEEE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSV 515 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~ 515 (1114)
+++.|..+..||+.+..... .....-...-..|+|+.... .+...+..+.|.+||.+.| .++..+++|...|..+
T Consensus 132 tcsvdt~vh~wd~rSp~~p~--ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~ 207 (1081)
T KOG0309|consen 132 TCSVDTYVHAWDMRSPHRPF--YSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSI 207 (1081)
T ss_pred eccccccceeeeccCCCcce--eeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehH
Confidence 99999999999998765322 23333344567899998776 3566677788999999865 5678899999999999
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC-CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
.|..... ..+.+.+.|++|++||.+.......... ...++..-.+.|-|...+ +-+.-.++.+..-.-
T Consensus 208 ~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~----------~mp~~G~n~v~~~~c 276 (1081)
T KOG0309|consen 208 DFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC----------IMPMVGGNMVPQLRC 276 (1081)
T ss_pred HHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE----------eccccCCeeeeeccc
Confidence 8764433 4688999999999999987554433222 233455555555554111 111111122222222
Q ss_pred CCeEEEEECCC-cceEEEeccCCCCCCcCeEEEcC----------CCCEEEEEeCCCcEEEEEccCC
Q 001248 595 DFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK----------DGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 595 dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~----------d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++....|+..+ .+.+.++.+|.. .|...-|-. ..-.|++=+.|.++++|-+.+.
T Consensus 277 ~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 277 ENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cchhhhhccccCCcceeeecCcch--HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 34444565443 357788876643 444333322 1237899999999999988653
No 303
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=8.4e-06 Score=91.39 Aligned_cols=113 Identities=19% Similarity=0.343 Sum_probs=84.2
Q ss_pred EEEEcCCCCeEEEEe----CCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc
Q 001248 425 RVIWSPDGSLFGVAY----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500 (1114)
Q Consensus 425 ~l~~spdg~~las~~----~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 500 (1114)
-..|+|...++|+++ ..|+|-||- ++|+.-+ ..+..-| +.+++|.|..- +|+.|-.-|.+.+|...+.+
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-~Vt~P~h---atSLCWHpe~~--vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-DVTYPVH---ATSLCWHPEEF--VLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-cccccee---hhhhccChHHH--HHhhccccceeEEEecCCce
Confidence 356888888888875 357788884 4555322 1122223 56799999766 78888889999999977776
Q ss_pred ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe
Q 001248 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546 (1114)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 546 (1114)
.-.....|..+|..+.|++ +|..++++..-|.+.+|.++..+..
T Consensus 93 ~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEI 136 (1416)
T ss_pred eeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeecccc
Confidence 6666677999999999865 5579999999999999988754443
No 304
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.60 E-value=9.5e-07 Score=87.35 Aligned_cols=226 Identities=16% Similarity=0.222 Sum_probs=140.1
Q ss_pred CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCc--eeeeeEeecccc------------CCeeEEEecCCCCeeEEEE
Q 001248 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHV------------GGVNDIAFSHPNKQLCVIT 484 (1114)
Q Consensus 419 h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~------------~~V~~v~~s~d~~~~~l~s 484 (1114)
..+.|+++.|...|.||++|...|.|.+|.-.... ..+...++++|. ..|..+.|..++..-.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 44679999999999999999999999999765432 122223455664 3588999988766546777
Q ss_pred ecCCCCEEEEeCCCCc-------------------cee--------E---------------e-eccccCEEEEeeccCC
Q 001248 485 CGDDKTIKVWDATNGA-------------------KQY--------I---------------F-EGHEAPVYSVCPHHKE 521 (1114)
Q Consensus 485 ~~~d~~i~iwd~~~~~-------------------~~~--------~---------------~-~~h~~~v~~~~~~~~~ 521 (1114)
.+.|++|++|.+.... .+. . . ..|.-.|.++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999875331 000 0 1 2455556667654332
Q ss_pred CceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC-CEEEEEeCCCeEEE
Q 001248 522 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKF 600 (1114)
Q Consensus 522 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i 600 (1114)
..+++ +.|=.|.+|+++-....+.+ +.+-|..-. .-...++...|+|.. +.+.-.+..|.|++
T Consensus 185 --et~lS-aDdLrINLWnl~i~D~sFnI---------VDiKP~nme----eLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 185 --ETLLS-ADDLRINLWNLEIIDGSFNI---------VDIKPHNME----ELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred --heeee-ccceeeeeccccccCCceEE---------EeccCccHH----HHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 44444 45778999988754332211 111111100 000123334455543 34555778999999
Q ss_pred EECCCcce------EEE--eccC------CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccc
Q 001248 601 WDMDSVQL------LTS--IDAD------GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 661 (1114)
Q Consensus 601 wd~~~~~~------~~~--~~~~------~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 661 (1114)
-|++.... +.. +.+. +-...|..+.|+++|+++++-+. -+++|||++..+.+++++.-|.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence 99874321 111 1110 11245778999999999987665 6899999988877777665443
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.8e-06 Score=88.59 Aligned_cols=213 Identities=12% Similarity=0.065 Sum_probs=142.4
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC-CCCEEEEeC
Q 001248 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDA 496 (1114)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~-d~~i~iwd~ 496 (1114)
-|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|.+.|.+++.+.++. ++.|.+. |..++++|+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEe
Confidence 377778777655 567999999999999998665333433445778999999999999998 7888777 999999999
Q ss_pred CCCcceeEeec--cccCEEEEeeccCCC-c--eEEEEEecCCeEEEEEcCCCCCee--eecCCCCeeEEEEEecCCCeEE
Q 001248 497 TNGAKQYIFEG--HEAPVYSVCPHHKEN-I--QFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 497 ~~~~~~~~~~~--h~~~v~~~~~~~~~~-~--~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
++-..+..++- -.+.+ +|..++. - .+.++.-.++.+.++|-....+.. .-..|..+|..
T Consensus 84 En~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~----------- 149 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKK----------- 149 (558)
T ss_pred eccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEE-----------
Confidence 87655533321 11222 2222221 1 233344457889999876544332 22234444444
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC------cceEEEec-------cCCCCCCcCeEEEcCCCCEEEEE
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------VQLLTSID-------ADGGLPASPRIRFNKDGCLLAVS 636 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~-------~~~~~~~v~~~~~s~d~~~l~~~ 636 (1114)
+.+.+.+..+++....|.|.-|.... .+....++ .........++.|+|+|..+.+-
T Consensus 150 ----------i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 150 ----------IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred ----------EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence 44455555688888899999998762 11111111 11223456899999999999999
Q ss_pred eCCCcEEEEEccCCccceeecc
Q 001248 637 TNDNGIKILATSDGIRLLRTFE 658 (1114)
Q Consensus 637 ~~dg~i~iwd~~~~~~~~~~~~ 658 (1114)
..|..|++++..++ ...+.+.
T Consensus 220 ~~DrkVR~F~~KtG-klvqeiD 240 (558)
T KOG0882|consen 220 NPDRKVRGFVFKTG-KLVQEID 240 (558)
T ss_pred CcccEEEEEEeccc-hhhhhhh
Confidence 99999999999998 5555553
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.55 E-value=0.00019 Score=75.72 Aligned_cols=228 Identities=19% Similarity=0.193 Sum_probs=140.5
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc-CCCCeEEEEeC
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSLFGVAYS 440 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~ 440 (1114)
-++.|.+....|+++--..+.|..|+..+++.... ... ....+++. ++|++++ +..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~l~v-~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGRLYV-ADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSEEEE-EET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCEEEE-EEc
Confidence 36789984444788877889999999998866431 111 26677777 6755555 445
Q ss_pred CCeEEEEEccCCceeeeeEeec--c-ccCCeeEEEecCCCCeeEEEEecCC--------CCEEEEeCCCCcceeEeeccc
Q 001248 441 RHIVQIYSYHGGDEVRQHLEID--A-HVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQYIFEGHE 509 (1114)
Q Consensus 441 dg~i~iwd~~~~~~~~~~~~l~--~-h~~~V~~v~~s~d~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~h~ 509 (1114)
++ +.++|..+++.. ...... . .....+.+++.++|+ +.++.... +.|..++.. ++... +...-
T Consensus 60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~ 133 (246)
T PF08450_consen 60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGL 133 (246)
T ss_dssp TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEE
T ss_pred Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEE-EecCc
Confidence 44 566699887543 333332 2 345688999999999 55654433 457777766 45333 33345
Q ss_pred cCEEEEeeccCCCceEE-EEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 510 APVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
...+.++|+++ ++.| ++-+..+.|..+++........- ..+.....+. .+...-++++.+|+.
T Consensus 134 ~~pNGi~~s~d--g~~lyv~ds~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~-------~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 134 GFPNGIAFSPD--GKTLYVADSFNGRIWRFDLDADGGELSN-------RRVFIDFPGG-------PGYPDGLAVDSDGNL 197 (246)
T ss_dssp SSEEEEEEETT--SSEEEEEETTTTEEEEEEEETTTCCEEE-------EEEEEE-SSS-------SCEEEEEEEBTTS-E
T ss_pred ccccceEECCc--chheeecccccceeEEEeccccccceee-------eeeEEEcCCC-------CcCCCcceEcCCCCE
Confidence 66788898654 4555 56677888988888654331100 0000000000 012334666677777
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc-CCCCEEEEEe
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVST 637 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~ 637 (1114)
.++....+.|.+++.+ |+.+..+.... ..+++++|. ++.+.|++.+
T Consensus 198 ~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 198 WVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEEEEESTTSSEEEEEE
T ss_pred EEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEEEEECCCCCEEEEEe
Confidence 7877789999999987 88888887662 368899994 6766666544
No 307
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.55 E-value=0.0049 Score=71.97 Aligned_cols=314 Identities=10% Similarity=0.084 Sum_probs=165.9
Q ss_pred CcccccccCCCceeEEEeccCC--CCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCc
Q 001248 714 VKPRITEESNDKSKVWKLTELS--EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA 791 (1114)
Q Consensus 714 ~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 791 (1114)
..+|.++..||.+.-|.+.... .....+. .-...++.--.|+..++.-+.+..|.-..+|.-+
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~-----~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n---------- 659 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKKV-----TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN---------- 659 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEcccccc-----ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC----------
Confidence 6788999999998777655422 1111100 1134455555666655555555555444444321
Q ss_pred cccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCcc--ccccCCCCCCeEEEEEec
Q 001248 792 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHP 869 (1114)
Q Consensus 792 ~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~sp 869 (1114)
+.+....+.- ..-..+..+.-+.-...++++..+.+++.-+..-+. ++++.- ......+++.+
T Consensus 660 -------------~kLv~spls~-kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~ 724 (1096)
T KOG1897|consen 660 -------------GKLVYSPLSL-KEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQE 724 (1096)
T ss_pred -------------CcEEEeccch-HHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCChhheEecc
Confidence 1111000000 000011111111223456777777777776654222 233322 23345566655
Q ss_pred CCCcEEEEEeCC--------------CcEEEEEcccceEEEeecc--c--ccCeeEEEEcCC-CCEEEEEeC--------
Q 001248 870 QDNNIIAIGMDD--------------SSIQIYNVRVDEVKSKLKG--H--SKRITGLAFSHA-LNVLVSSGA-------- 922 (1114)
Q Consensus 870 ~d~~~la~g~~d--------------g~v~iwd~~~~~~~~~l~~--h--~~~V~~l~~s~d-~~~l~s~s~-------- 922 (1114)
...++++.+.- ..++++|-+|-+.+...+- . .-.|.++.|..| +.++++|..
T Consensus 725 -~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~e 803 (1096)
T KOG1897|consen 725 -SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENE 803 (1096)
T ss_pred -cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCC
Confidence 33333333211 1467777776655433221 1 123555568887 777887753
Q ss_pred --CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeE
Q 001248 923 --DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITH 1000 (1114)
Q Consensus 923 --D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 1000 (1114)
.|.|.|+.+......+........ +.+. +.-.-...++++-...|++|+..+.+.++.-. .|..++..
T Consensus 804 p~~GRIivfe~~e~~~L~~v~e~~v~------Gav~--aL~~fngkllA~In~~vrLye~t~~~eLr~e~--~~~~~~~a 873 (1096)
T KOG1897|consen 804 PVNGRIIVFEFEELNSLELVAETVVK------GAVY--ALVEFNGKLLAGINQSVRLYEWTTERELRIEC--NISNPIIA 873 (1096)
T ss_pred cccceEEEEEEecCCceeeeeeeeec------ccee--ehhhhCCeEEEecCcEEEEEEccccceehhhh--cccCCeEE
Confidence 366777777662221111111111 1122 22222334455667889999999886655533 56788999
Q ss_pred EEECCCCCEEEEEEcCCeEEEEEcCCCe--eeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1001 ATFSCDSQLVYACFLDATVCVFSAANLK--LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1001 l~~s~dg~~l~s~s~Dg~I~vwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
+...-.|..+++|..=++|.+......+ +.-.-+ .+.| -+.+++.+. |++..+-+..+|.+++-...
T Consensus 874 L~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr--D~~p-------~Wmtaveil--~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 874 LDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR--DYNP-------NWMTAVEIL--DDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh--hhCc-------cceeeEEEe--cCceEEeecccccEEEEEec
Confidence 9999999999999888887776554433 443322 2222 223356655 35667777889999998775
Q ss_pred C
Q 001248 1079 E 1079 (1114)
Q Consensus 1079 ~ 1079 (1114)
+
T Consensus 943 ~ 943 (1096)
T KOG1897|consen 943 S 943 (1096)
T ss_pred C
Confidence 4
No 308
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.50 E-value=8.4e-05 Score=77.72 Aligned_cols=205 Identities=17% Similarity=0.189 Sum_probs=127.5
Q ss_pred EEEEeeCCCEEEEEe---CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc-cceEEEe-
Q 001248 823 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKSK- 897 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~-~~~~~~~- 897 (1114)
.++++.||+++.+.. .-.|.|-|+...+.+.++.... +..+ -|..++-+.+-+.||.+.-..+. .|+...+
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEE--EecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 457778888877765 4679999999888877765322 2222 23233456677889999988887 3544322
Q ss_pred ---ecccccCe-eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCC----CCCCCCCCceEEEEccCCcEEEE
Q 001248 898 ---LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT----GRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 898 ---l~~h~~~V-~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
|..-.+++ ..-+++..+..++-.+.+|.|+--++............... .....++.-..+++++..+.|.+
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 22222222 23344555566666888888888887765432222222111 01112245567899887766665
Q ss_pred E----eCC-------eEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCCeeeEEeC
Q 001248 970 V----HET-------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 970 ~----~d~-------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
- .++ .|.+||+.+++.+..+.. ..++.+|+++.|.+ +|++.+ .++.+.|||..+|+++.++.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 2 222 588999999999999876 34688999999888 555544 57899999999999999887
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=5.8e-07 Score=90.43 Aligned_cols=164 Identities=13% Similarity=0.085 Sum_probs=122.5
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeE
Q 001248 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV 444 (1114)
Q Consensus 365 ~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i 444 (1114)
+||-+-.-+-++.+.+-.|-+-|+++|-... +. ..+.|.++.|...+.++..|+.+|.|
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI 276 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEI 276 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcE
Confidence 6664322122444457788899999886532 22 45689999999999999999999999
Q ss_pred EEEEccCCce--eeeeEeeccccCCeeEEEecC-CCCeeEEEEecCCCCEEEEeCCCCcc---eeEeeccccCEEEEeec
Q 001248 445 QIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVYSVCPH 518 (1114)
Q Consensus 445 ~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~~ 518 (1114)
...|+..+.. ..+...+ -|...|+++.... +++ +|++.+.+|+|++||.+.-++ +.++.||...-.-+-++
T Consensus 277 ~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~ 353 (425)
T KOG2695|consen 277 FVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAH 353 (425)
T ss_pred EEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccc
Confidence 9999986411 1111122 5899999998887 555 788999999999999987666 88999998766666566
Q ss_pred cCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC
Q 001248 519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 552 (1114)
Q Consensus 519 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 552 (1114)
-++....+++++.|...++|.++.+..+.++..+
T Consensus 354 v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 354 VKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 6666678999999999999999987776655443
No 310
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.49 E-value=1.1e-06 Score=86.94 Aligned_cols=119 Identities=15% Similarity=0.264 Sum_probs=88.9
Q ss_pred CCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCcc---ccccCCCC-----CCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 816 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATFMPPP-----PAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~---~~~~~~~~-----~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
.|...+.++.++.|...++++.|=.|.+|++.-... +..+++|. .-|++..|+|....++...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 478889999999999999999999999999863222 12233333 3478899999778888889999999999
Q ss_pred EcccceEE------E--e--------ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001248 888 NVRVDEVK------S--K--------LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 935 (1114)
Q Consensus 888 d~~~~~~~------~--~--------l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~ 935 (1114)
|++...+. . . +.+-...|..+.|+++|+++++-+. -+|+|||+...+
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 99742211 0 1 1223357888999999999998654 469999987643
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.48 E-value=2.9e-05 Score=81.70 Aligned_cols=229 Identities=15% Similarity=0.084 Sum_probs=135.8
Q ss_pred CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeE
Q 001248 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459 (1114)
Q Consensus 380 dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~ 459 (1114)
+|+|..||..+|+.+-+..+. .... ...+. ..+++.++.+++.++.+..||..+|+.+...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~----------------~~~~-~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~- 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG----------------PGIG-GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF- 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS----------------SSCS-SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred CCEEEEEECCCCCEEEEEECC----------------CCCC-Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence 688999999999887643211 0111 22211 2336777888889999999999999876533
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-ecccc---CEEEEeeccCCCceEEEEEecCCeE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEA---PVYSVCPHHKENIQFIFSTALDGKI 535 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~---~v~~~~~~~~~~~~~l~s~~~d~~i 535 (1114)
.+.+ .+...... ++. .++.++.++.|..+|..+|+.+... ..... .......... +..++.+..++.|
T Consensus 63 ~~~~---~~~~~~~~-~~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l 134 (238)
T PF13360_consen 63 DLPG---PISGAPVV-DGG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL 134 (238)
T ss_dssp ECSS---CGGSGEEE-ETT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred eccc---cccceeee-ccc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence 2222 21111222 334 3555557789999999999998874 32211 1111111112 4578888889999
Q ss_pred EEEEcCCCCCeeeecCCCCee-EEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q 001248 536 KAWLYDNLGSRVDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 536 ~~wd~~~~~~~~~~~~~~~~v-~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
..+|.++++.+.......... ..+....+ ....+.+. ++ .++.++.++.+..+|..+++.+....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~- 200 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSD-----------INGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP- 200 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETT-----------EEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC-
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecc-----------cccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec-
Confidence 999999988777665533211 00000000 00111111 22 57777777754444999998665433
Q ss_pred CCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 615 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 615 ~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
.. .+.. ....++..|++++.++.+..||..+++..
T Consensus 201 ~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 201 IS---GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CC---CccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 21 1222 14567788888889999999999999543
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.48 E-value=1.9e-06 Score=83.46 Aligned_cols=210 Identities=12% Similarity=0.182 Sum_probs=124.3
Q ss_pred ceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC
Q 001248 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 440 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 440 (1114)
|+.+.|+-+- +|+++..++.+.......+.... .|+-.....++ ..+..|+.+=.+=+.+--+..+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~--~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPF--KVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCce--eeeeccCCCCCcccccccCCceEecCC
Confidence 6777777665 58888888888777765554332 22211111111 123345444444455556788999999
Q ss_pred CCeEEEEEccCCceeeeeEeec-cccCCeeEEEecCCCCeeEEEEec-----CCCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 441 RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 441 dg~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
||.+.+++.+.-..+.. ... .|.+. .+......+. .+.+++ .-+..+.|+++..+.+..-..-...|.+
T Consensus 110 dg~~~v~s~~~~~~~~~--~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALMS--RIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhhh--hcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 99999999876221110 111 12211 1222333344 233332 1234566766543322211112234889
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCee-eecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
+|-+|... +++++|+.||.+-+||++...-.. .+..|...+..+-|.|... ..|++++
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p--------------------~~Lft~s 243 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP--------------------EHLFTCS 243 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc--------------------hheeEec
Confidence 99887765 688899999999999999864333 4456666666666666432 4699999
Q ss_pred CCCeEEEEECCC
Q 001248 594 DDFSIKFWDMDS 605 (1114)
Q Consensus 594 ~dg~i~iwd~~~ 605 (1114)
+||.+..||..+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999764
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=5e-07 Score=63.41 Aligned_cols=39 Identities=31% Similarity=0.555 Sum_probs=37.2
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
|+++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 314
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.8e-06 Score=89.96 Aligned_cols=213 Identities=13% Similarity=0.081 Sum_probs=153.9
Q ss_pred CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc---ceEEEeecccccCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 001248 858 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG 933 (1114)
Q Consensus 858 ~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~---~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D~~v~iwd~~~ 933 (1114)
|...|+.+..+. .+++.+++-||.++.|.-.. -+.+..+..|-+.|.+++.+-|+.++.|.+. |..++++|+++
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 666777776664 67999999999999998543 2455667889999999999999999999777 99999999998
Q ss_pred CccccccccccCCCCCCCCCCceEEEEccCC--cEEEE--EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCE
Q 001248 934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ--IHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1009 (1114)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg--~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1009 (1114)
-.......+..+++ . ..+..++.. ..+++ ..++.+.++|-...-|.......-|..+|..+.+.+-+..
T Consensus 86 ~DminmiKL~~lPg------~-a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds 158 (558)
T KOG0882|consen 86 FDMINMIKLVDLPG------F-AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS 158 (558)
T ss_pred cchhhhcccccCCC------c-eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence 55433222222222 1 122222221 14444 3788999999887776655566678999999999999999
Q ss_pred EEEEEcCCeEEEEEcCC------CeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1010 VYACFLDATVCVFSAAN------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1010 l~s~s~Dg~I~vwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+++....|.|.-|.... +++...++...++-.-. -..-.+.++.|+| ++..+.+-+.|..|++++..+|+
T Consensus 159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~-K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP-KAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred eeeccccceeEeecCCCcccCccccccccccccchhhccc-ccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence 99998899999999872 32332232222221111 1124466899999 68999999999999999999998
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=5e-06 Score=93.45 Aligned_cols=190 Identities=15% Similarity=0.157 Sum_probs=133.3
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 001248 860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 939 (1114)
Q Consensus 860 ~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~ 939 (1114)
..+.|++++ +++|+.|+.+|.|++++.... . .+...|+.. ..+|.+++|||.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 457788885 479999999999999997643 2 444446554 56899999999999999998887543221
Q ss_pred cccccCCCCCCCCCCceEEEEccC-----CcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE
Q 001248 940 RFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~v~fspd-----g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s 1014 (1114)
. .-+ .++.+++++|| .+.+++|+...+.++.-.-..-........-.++|.++.| .|.++|-++
T Consensus 109 ~-----df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 109 Y-----DFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred E-----ecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence 1 111 26789999998 5667775554477766432222222222344789999999 678888887
Q ss_pred cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1015 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1015 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.+| |+|||+.+++.+..+++....+ .....+-.+.|.+ ...|+.| ...+|++..|..
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~----R~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSV----RPELFPPHLHWQD--EDRLVIG-WGDSVKICSIKK 234 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCC----CcccCCCceEecC--CCeEEEe-cCCeEEEEEEec
Confidence 665 9999999999999888555222 3335566889986 3556655 677889999883
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=3.4e-07 Score=102.59 Aligned_cols=198 Identities=16% Similarity=0.195 Sum_probs=144.3
Q ss_pred ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC--cEE
Q 001248 850 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLC 927 (1114)
Q Consensus 850 ~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~--~v~ 927 (1114)
+..+++..|....+|++|+- +.++|++|+-.|.|++|++.+|.......+|.++|+-+.-+.||..+.+.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 44456777888899999999 889999999999999999999999999999999999999999998877655443 467
Q ss_pred EEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecC--CCCcCeeEEEEC
Q 001248 928 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ESSAPITHATFS 1004 (1114)
Q Consensus 928 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~s 1004 (1114)
+|++.+--. ....+ ..-.++.|+..-..-+.| ......+||+.++....++..+ +.+..=.+..||
T Consensus 1171 LW~~~s~~~----~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1171 LWDASSTGG----PRHSF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred HhccccccC----ccccc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 999876111 11111 245788998876655554 4467889999999877664321 123344778899
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1005 CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1005 ~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
|+.++++ .|| .+||+...+.+++|..-.... .=.|+|. |..++.-+ .|||+.+-+
T Consensus 1240 P~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-----------~G~FHP~-g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1240 PCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-----------GGGFHPS-GNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred CCcceEe---eCc--eeeeeccHHHHhhhhhheecc-----------cccccCC-CceEEeec-----hhhhhHHHH
Confidence 9999887 566 479999888887776211111 2357884 66666555 578887766
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.41 E-value=0.0011 Score=64.95 Aligned_cols=145 Identities=10% Similarity=0.056 Sum_probs=95.2
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeE
Q 001248 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV 444 (1114)
Q Consensus 365 ~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i 444 (1114)
..-+|.+.+++.|+..+.+.--|..+|+..-+. --...|.+-+.- -|++++.|+..|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~--------------------ilg~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA--------------------ILGVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeeh--------------------hhCceeeeeeEE-ECCEEEEEEccCcE
Confidence 344566778999999999999999999875421 112233332222 47889999999999
Q ss_pred EEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCce
Q 001248 445 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524 (1114)
Q Consensus 445 ~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 524 (1114)
++.+.++|........+..- . ......+++. ++..|+.|++.+.-|..+..++...+...+...+-++.+. + .
T Consensus 76 Yfl~~~tGs~~w~f~~~~~v--k-~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~ 148 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILETV--K-VRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-G 148 (354)
T ss_pred EEEEecchhheeeeeehhhh--c-cceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-c
Confidence 99999999766543332211 1 1233456777 8999999999999999999998887643333333333332 2 2
Q ss_pred EEEEEecCCeEEE
Q 001248 525 FIFSTALDGKIKA 537 (1114)
Q Consensus 525 ~l~s~~~d~~i~~ 537 (1114)
.|+.+...|.+.-
T Consensus 149 sly~a~t~G~vla 161 (354)
T KOG4649|consen 149 SLYAAITAGAVLA 161 (354)
T ss_pred eEEEEeccceEEE
Confidence 4555555555443
No 318
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=1.3e-06 Score=88.05 Aligned_cols=151 Identities=14% Similarity=0.154 Sum_probs=112.3
Q ss_pred EEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCc
Q 001248 876 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 955 (1114)
Q Consensus 876 a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 955 (1114)
++.+.+..|-+-|+++|- -..|. ..+.|.++.|...++++..|+..|.|...|+..+......+...+-. ...|
T Consensus 228 fs~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh----~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYH----DSSV 301 (425)
T ss_pred ecccccceeEEEEeeccc-ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEc----Ccch
Confidence 334456778888988864 24444 56779999999888999999999999999998764333333222211 1366
Q ss_pred eEEEEcc-CCcEEEE-EeCCeEEEEEcCCCce---eeeeecCCCCc--CeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 956 TRVQFHQ-DQIHFLV-VHETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 956 ~~v~fsp-dg~~l~~-~~d~~i~iwd~~~~~~---~~~~~~~~h~~--~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
+++..-. ++.+|.+ +.+|+|++||.+..++ +.++. +|.. .-.-+-+.+....+++++.|...|||.++.|.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 7776655 6666666 7999999999998887 77766 6633 33344556778889999999999999999999
Q ss_pred eeEEeC
Q 001248 1029 LRCRIN 1034 (1114)
Q Consensus 1029 ~~~~~~ 1034 (1114)
++++++
T Consensus 380 Ll~tip 385 (425)
T KOG2695|consen 380 LLCTIP 385 (425)
T ss_pred eeeccC
Confidence 999987
No 319
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.40 E-value=3.7e-06 Score=81.54 Aligned_cols=198 Identities=15% Similarity=0.118 Sum_probs=119.7
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE------------EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 001248 862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK------------SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929 (1114)
Q Consensus 862 i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~------------~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iw 929 (1114)
++.+.++. ...|+++..++.+..+...++.+. ..+..|+.+-.+-+.+--+..++++..||.+.++
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 66666663 557777777777666655444332 2233343333333333346789999999999999
Q ss_pred eCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEE
Q 001248 930 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH------ETQLAIFETTKLECVKQWVPRESSAPITHATF 1003 (1114)
Q Consensus 930 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~ 1003 (1114)
+.+.--. ..-++...+. ...+.++-..+.++.++. -+..++|+++-.+....-. .....|++++-
T Consensus 117 s~~~~~~---~~~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~ 187 (319)
T KOG4714|consen 117 STDKDLA---LMSRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALDAVTALCS 187 (319)
T ss_pred echHHHh---hhhhcccccc----cccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccccchhhhC
Confidence 9876111 0011111111 112233334455555532 3455666655433322111 11345999999
Q ss_pred CCCCCE-EEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1004 SCDSQL-VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1004 s~dg~~-l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.|..+. +++|+.||.+-+||.+.......+ +.. | ...++ .+.|+|.++..|+++++||.+..||-++
T Consensus 188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~----l~a--h-k~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 188 HPAQQHLVCCGTDDGIVGLWDARNVAMPVSL----LKA--H-KAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CcccccEEEEecCCCeEEEEEcccccchHHH----HHH--h-hhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence 997765 578889999999999987443222 121 2 22356 7999999999999999999999999885
No 320
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.40 E-value=1.2e-06 Score=83.25 Aligned_cols=132 Identities=22% Similarity=0.245 Sum_probs=97.5
Q ss_pred HHHHHHHhhccCHHHHHHHhccCc--cccCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHH
Q 001248 38 MKYFEDEVHNGNWDDVEKYLSGFT--KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEI 115 (1114)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l 115 (1114)
...++++|++|+++.|++.++... +... ...+.|.|+.|+|+|++..++..+|+.+.|+.+.|......+.++.+
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~---~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~ 81 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR---NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKL 81 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc---CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 578999999999999999999872 2221 23599999999999999999999999999999976654355667777
Q ss_pred HHHhccccccc--hhhhccCCCChHHHHHHHHHHHhhcccCCCcccccCCCCCc-hhHHHHHHHHhHHHH
Q 001248 116 TQLLTLENFRE--NEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQ 182 (1114)
Q Consensus 116 ~~l~~~~~~~~--~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~Q 182 (1114)
..++....... ...+...-+ ...|+++++.+.+.+-...- +| .+.|..++++....+
T Consensus 82 ~~lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 82 MSLLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 77777765544 223332222 37789999998886655322 33 467888888876654
No 321
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=2.6e-06 Score=87.08 Aligned_cols=121 Identities=12% Similarity=0.201 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC--------ccHHHHHHHhhccCHHHHHHHhccCc-cccCcccchhhHHH
Q 001248 5 SRELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFE 75 (1114)
Q Consensus 5 ~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~~~~~~-~~~~~~~~~~~~~~ 75 (1114)
+.-+.|+|..||..+||.+||..|-++|.+. .++..++++|+.|+...|+...+.-. .+. +....+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 4558899999999999999999999999985 13778899999999999988777651 111 122348899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccch
Q 001248 76 IRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFREN 127 (1114)
Q Consensus 76 l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~ 127 (1114)
++.|+|+||++.+++.+|+.+.++.|.|........++....++.++.....
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~ 244 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSS 244 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCc
Confidence 9999999999999999999999999999987778888888888877654433
No 322
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.38 E-value=6.3e-05 Score=85.07 Aligned_cols=185 Identities=11% Similarity=0.048 Sum_probs=116.5
Q ss_pred EeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC---C-cEEEEEcccceEEEeec
Q 001248 826 LSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 826 ~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d---g-~v~iwd~~~~~~~~~l~ 899 (1114)
+++||+.+...+ .+.+.+.|..+.+...++.... ....++++| +++++++.+.+ | ++..-+..+...+..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 456887765444 5778899998877766654322 456788999 78888777532 2 22222222111111111
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEE
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA 976 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~ 976 (1114)
- ..+ -++.++|++... .++.|.+.|..+..... .....++.+. ....+.+||||++++++ .+..+.
T Consensus 278 i--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK-----sPHGV~vSPDGkylyVanklS~tVS 346 (635)
T PRK02888 278 I--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK-----NPHGVNTSPDGKYFIANGKLSPTVT 346 (635)
T ss_pred h--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCC-----CccceEECCCCCEEEEeCCCCCcEE
Confidence 0 000 133457877665 36789999988710000 1112222232 45889999999999994 578999
Q ss_pred EEEcCCCce------------eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 977 IFETTKLEC------------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 977 iwd~~~~~~------------~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
|+|+.+.+. +.+... .......+|.++|....+-..|..|..|++.+
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999988663 333322 44567789999998888888999999999987
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.37 E-value=0.0028 Score=75.58 Aligned_cols=275 Identities=14% Similarity=0.128 Sum_probs=148.9
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcccee
Q 001248 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1114)
Q Consensus 576 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1114)
.+..+.|..+.+.++.+...|.|.+-|..+....-.-... ..|.+++||||+..++..+..+++.+-.- +- ..+.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~-~f-~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTK-DF-EPIA 144 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEec-cc-cchh
Confidence 5666777777778999999999999988776543332222 35899999999999999998888776432 11 0110
Q ss_pred eccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCC
Q 001248 656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 735 (1114)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 735 (1114)
.-.-+..... ....+..+....-.-+.-..+.
T Consensus 145 E~~L~~d~~~------------------------------------------------~sk~v~VGwGrkeTqfrgs~gr 176 (1265)
T KOG1920|consen 145 EKPLDADDER------------------------------------------------KSKFVNVGWGRKETQFRGSEGR 176 (1265)
T ss_pred cccccccccc------------------------------------------------ccccceecccccceeeecchhh
Confidence 0000000000 0000111111100001100000
Q ss_pred CCccc---cccccCccccccceEEEEEccCcceeeec-----ccCceEEEEeecccccCCCCCccccccccccCCCCCcc
Q 001248 736 EPNQC---RSLRLPENLRATKISRLIFTNSGNAILAL-----ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 807 (1114)
Q Consensus 736 ~~~~~---~~~~~~~~~~~~~i~~l~~s~~~~~l~~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~ 807 (1114)
....- ..-..+.......=..+.|--||.++++. .....++||+-. |.+
T Consensus 177 ~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-----------------------g~L 233 (1265)
T KOG1920|consen 177 QAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-----------------------GAL 233 (1265)
T ss_pred hcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-----------------------chh
Confidence 00000 00000000012233568899999988773 222678888743 111
Q ss_pred ccccCCCCCCCCCccEEEEeeCCCEEEEEe----CCeEEEEEcCC---CccccccCCCCCCeEEEEEecCCCcEEEE---
Q 001248 808 MTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT---FKTMATFMPPPPAATFLAFHPQDNNIIAI--- 877 (1114)
Q Consensus 808 ~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~----dg~i~iwd~~~---~~~~~~~~~~~~~i~~l~~sp~d~~~la~--- 877 (1114)
-.. .......-.+++|-|.|..+++-. |+.|.+|.... +.....++....+|..++|+. ++.+||+
T Consensus 234 ns~---se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~ 309 (1265)
T KOG1920|consen 234 NST---SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTS 309 (1265)
T ss_pred hcc---cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeeec
Confidence 100 000223345789999999999763 56799998653 222233343444599999999 8999998
Q ss_pred EeCCCcEEEEEcccc--eEEEeecccccCeeEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 001248 878 GMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 878 g~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~D~~v~iwd~~ 932 (1114)
......|++|-+... -+.+.+.-..... +.|+|.. ..|..-..+|...++++.
T Consensus 310 ~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 310 NLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred ccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 455556999988763 2333343333322 7888743 233333366666665543
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.36 E-value=0.00012 Score=86.52 Aligned_cols=275 Identities=10% Similarity=0.148 Sum_probs=155.8
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....|.++.|..+...++.+...|.|.+-|....... ++. .-...|.+++||||
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--------------------ivg------~vd~GI~aaswS~D 120 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE--------------------IVG------NVDNGISAASWSPD 120 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee--------------------eee------eccCceEEEeecCC
Confidence 3478999999999999999999999887654321111 011 14677999999999
Q ss_pred CCEEEEEeC-CeEEEEEcCCCccccccCCC-----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE-EEeecccc
Q 001248 830 DSYVMSASG-GKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHS 902 (1114)
Q Consensus 830 ~~~l~~~~d-g~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~-~~~l~~h~ 902 (1114)
++.++..+. +++.+ ...+..++....-+ .+....+-|-. ..+.+ -| ..|.....+....+. .....-|
T Consensus 121 ee~l~liT~~~tll~-mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~- 195 (1265)
T KOG1920|consen 121 EELLALITGRQTLLF-MTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RG-SEGRQAARQKIEKEKALEQIEQD- 195 (1265)
T ss_pred CcEEEEEeCCcEEEE-Eeccccchhccccccccccccccceecccc-cceee-ec-chhhhcccccccccccccchhhc-
Confidence 999999885 55544 44444444332211 11122222221 00000 01 111111111111100 0101112
Q ss_pred cCeeEEEEcCCCCEEEE-----EeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE----EeCC
Q 001248 903 KRITGLAFSHALNVLVS-----SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHET 973 (1114)
Q Consensus 903 ~~V~~l~~s~d~~~l~s-----~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~----~~d~ 973 (1114)
+.=++|.|--||.++|+ ....+.|+|||-+. .... ..... .+.-.+++|-|.|..+++ .+|+
T Consensus 196 ~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns---~se~~-----~~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 196 DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNS---TSEPV-----EGLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred cCCceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhc---ccCcc-----cccccceeecCCCCeEeeeeecCCCC
Confidence 22356899999999987 33337899999883 2211 11111 123368999999999998 2566
Q ss_pred eEEEEEcCCCceeeeeec--CCCCcCeeEEEECCCCCEEEE---EEcCCeEEEEEcCCCeee--EEeCCCcccCCCCCCC
Q 001248 974 QLAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYA---CFLDATVCVFSAANLKLR--CRINPSAYLPAGVSSS 1046 (1114)
Q Consensus 974 ~i~iwd~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s---~s~Dg~I~vwd~~~~~~~--~~~~~~~~~~~~~~~~ 1046 (1114)
.|.+|.-+..+ ...+.. .....+|..++|+.++..||+ ......|++|-+.+..-- +.+. ++..
T Consensus 267 ~IvffErNGL~-hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~----~~~~---- 337 (1265)
T KOG1920|consen 267 DIVFFERNGLR-HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ----FSQK---- 337 (1265)
T ss_pred cEEEEecCCcc-ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe----cccc----
Confidence 78888865332 222221 122344999999999999987 444455999998877532 2222 2211
Q ss_pred CccceEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1047 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1047 ~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
. -+.|+|.....|..-..+|...+.++
T Consensus 338 -~---~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 338 -A---LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred -c---cccccCCCceeEEEEecCCcEEEEEE
Confidence 1 16677655555555555665555444
No 325
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.29 E-value=4.1e-05 Score=86.50 Aligned_cols=224 Identities=12% Similarity=0.037 Sum_probs=137.9
Q ss_pred eCCCEEEEEe--CCeEEEEEcCCCccccccCC------C---------CCCeEE-----EEEecCCCcEEE-EEeCCCcE
Q 001248 828 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP------P---------PPAATF-----LAFHPQDNNIIA-IGMDDSSI 884 (1114)
Q Consensus 828 ~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~------~---------~~~i~~-----l~~sp~d~~~la-~g~~dg~v 884 (1114)
.||+||..-. +..|-..++...++-+.+.. | ...|.+ +=++| ||+.+. +.-..+.+
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v 217 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF 217 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence 4888998887 45566666655444322211 1 112221 22445 555443 23344677
Q ss_pred EEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCc--EEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc
Q 001248 885 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 885 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp 962 (1114)
.+.|..+.+...++.--. .-..+++++||+++++.+.+.. ..+-.+...+......+... ..-++.+
T Consensus 218 SvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----------~iea~vk 286 (635)
T PRK02888 218 TAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----------RIEEAVK 286 (635)
T ss_pred EEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----------HHHHhhh
Confidence 788888877666654322 3456899999999988863221 12222222111100000000 0113455
Q ss_pred CCcEEEEEeCCeEEEEEcCC-----CceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCee-------
Q 001248 963 DQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL------- 1029 (1114)
Q Consensus 963 dg~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~------- 1029 (1114)
+|++..+ .++.|.+.|..+ .+.+..+.. ......+.+||||+++++++ .+.+|.|.|+.+.+.
T Consensus 287 dGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 287 AGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred CCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 7887666 467899999998 344554443 56788999999999987655 588999999998663
Q ss_pred -----eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1030 -----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1030 -----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
..+++ + | .-|+..+|++ +|+...|-.-|..|..|++.+
T Consensus 363 ~~~~vvaeve----v--G-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPE----L--G-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeec----c--C-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 33333 2 2 4477899998 578888999999999999987
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.27 E-value=1.3e-05 Score=91.12 Aligned_cols=181 Identities=15% Similarity=0.173 Sum_probs=133.0
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG 907 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~ 907 (1114)
++..++.|+ ...+..+|+.+.+..+......+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++..|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445666666 778888999988887777655656666665 6789999999999999999999999999999999986
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC--CcEEEEEeCCeEE
Q 001248 908 LAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLA 976 (1114)
Q Consensus 908 l~~s~d~~~l~s~s~---------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd--g~~l~~~~d~~i~ 976 (1114)
+.. .|+.|+++|. |.-|+|||+..-.. ..++....+ ..-+.|.|. .+..+++..|+..
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra--l~PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA--LSPIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhc--cCCcccccC-------chhhhhcccccceEEEEeccccee
Confidence 666 5889999876 45689999987332 222332222 244667774 3444457888888
Q ss_pred EEEcCCCce--eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 977 IFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 977 iwd~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
+-|..+..- ...+.....+..+..+++|++|..||.|..+|.|.+|.
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 888443221 22222223355699999999999999999999999998
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=7e-05 Score=85.16 Aligned_cols=208 Identities=13% Similarity=0.145 Sum_probs=131.2
Q ss_pred EEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccC-eeEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCcccc-
Q 001248 866 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQK- 938 (1114)
Q Consensus 866 ~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~s~s~D~~-----v~iwd~~~~~~~~- 938 (1114)
+|++ ++..+|.|+.+|.|.+++- +-+.+..++++... |+.+-...+..+|++.+.|+. |+||+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 3466 7789999999999988873 34556788888777 554444444478999888865 8999998754333
Q ss_pred cccc---ccCCCCC-CCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCC--CceeeeeecCCCCcCeeEEEECCCCCEEE
Q 001248 939 NRFL---QIPTGRT-PTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVY 1011 (1114)
Q Consensus 939 ~~~~---~~~~~~~-~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1011 (1114)
..++ ....... ..+.++..++.+.+-+.+|+| .+|.|..+.-.- .+..+.-....-..+||.+++-.|++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2333 2222111 124578899999999999997 788888775321 11112222223377999999999999844
Q ss_pred EEEcCCeEEEEEcCCCee-eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcccCC
Q 001248 1012 ACFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVP 1087 (1114)
Q Consensus 1012 s~s~Dg~I~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~ 1087 (1114)
-+..-..|.+|.+....+ ++.+. . ++.... +.+|++.-++ +++++ +..|.+++.....+.|..+
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld-----~---~G~~ln--Css~~~~t~q-fIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD-----N---NGISLN--CSSFSDGTYQ-FICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec-----c---CCccce--eeecCCCCcc-EEEec-CceEEEEcCCCcceeeeec
Confidence 444567899999884332 22222 1 122233 6667753322 44433 6778888877655444443
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=6.1e-05 Score=78.02 Aligned_cols=230 Identities=11% Similarity=0.077 Sum_probs=136.8
Q ss_pred EEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCC-CEEEE
Q 001248 841 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVS 919 (1114)
Q Consensus 841 i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~-~~l~s 919 (1114)
+++.+..+.+...-+..+...|..++|||....++..++.+..|.|.|+++...+.....| ..+++++|.-|. .+|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6777777777677777888899999999954558999999999999999999888888888 789999998765 56778
Q ss_pred EeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEE------EEccCCcEEEEEeCCeEEEEEcCCC--ceeeeeec
Q 001248 920 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV------QFHQDQIHFLVVHETQLAIFETTKL--ECVKQWVP 991 (1114)
Q Consensus 920 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v------~fspdg~~l~~~~d~~i~iwd~~~~--~~~~~~~~ 991 (1114)
|...|.|.|||+...+............ .+|..+ ...+-|.+|+.+ --.+..|+.... ........
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~-----~pv~~i~~~~~n~~f~~gglLv~~-lt~l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTI-----NPVHKIAPVQPNKIFTSGGLLVFA-LTVLQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhcc-----CcceeecccCccccccccceEEee-ehhhhhhhhhccccCCCccccc
Confidence 8899999999998755432222111110 122222 333445555442 222444544322 11111111
Q ss_pred CCCCcCeeEEEECCCCCEEEEEEcC-C------eEE-EEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeE
Q 001248 992 RESSAPITHATFSCDSQLVYACFLD-A------TVC-VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1063 (1114)
Q Consensus 992 ~~h~~~v~~l~~s~dg~~l~s~s~D-g------~I~-vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1063 (1114)
+..+...++++.+-.+.++....- . .|- --|..+|..++..+...+ .+. .......-..+.+.|.++|
T Consensus 328 -e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~--Gs~-~~kl~t~~ai~~~~~nn~i 403 (463)
T KOG1645|consen 328 -EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF--GSK-QTKLSTTQAIRAVEDNNYI 403 (463)
T ss_pred -CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc--CCc-ccccccccceeccccccEE
Confidence 113445555555544554433322 1 111 124456666665553332 111 1112222333434355554
Q ss_pred -EEEeCCCcEEEEeccCCC
Q 001248 1064 -ALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1064 -~s~~~Dg~v~vW~i~~~~ 1081 (1114)
.+|++.+++.+||+.+.+
T Consensus 404 v~~gd~tn~lil~D~~s~e 422 (463)
T KOG1645|consen 404 VVVGDSTNELILQDPHSFE 422 (463)
T ss_pred EEecCCcceeEEeccchhh
Confidence 466677899999999988
No 329
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.23 E-value=0.0014 Score=68.73 Aligned_cols=248 Identities=17% Similarity=0.189 Sum_probs=148.2
Q ss_pred CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe----------CCCeEEEEEcc
Q 001248 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY----------SRHIVQIYSYH 450 (1114)
Q Consensus 381 g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~----------~dg~i~iwd~~ 450 (1114)
+.|.|+|.++++.+... -.+ -.-.+..||||+.+.+++ ..-.|.+||..
T Consensus 17 ~rv~viD~d~~k~lGmi------------------~~g---~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMI------------------DTG---FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp EEEEEEETTTTEEEEEE------------------EEE---SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred ceEEEEECCCCcEEEEe------------------ecc---cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC
Confidence 47889998888776531 111 334477899999998753 23459999999
Q ss_pred CCceeeeeEeecc-cc----CCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceE
Q 001248 451 GGDEVRQHLEIDA-HV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 525 (1114)
Q Consensus 451 ~~~~~~~~~~l~~-h~----~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 525 (1114)
+-.....+ .+.. |. .....+++|.||+++++.-.+--.+|.|-|++.++.+..+.-- ....+ .|.++ .-
T Consensus 76 TL~~~~EI-~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i--yP~~~-~~ 149 (342)
T PF06433_consen 76 TLSPTGEI-EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI--YPSGN-RG 149 (342)
T ss_dssp TTEEEEEE-EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE--EEEET-TE
T ss_pred cCcccceE-ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE--EecCC-Cc
Confidence 86544432 2222 11 2335679999999877777777888999999999988777521 11111 24444 34
Q ss_pred EEEEecCCeEEEEEcCCCCCeeee-----cCC----------------------CCeeEEEEEecCCCeEEe--------
Q 001248 526 IFSTALDGKIKAWLYDNLGSRVDY-----EAP----------------------GRWCTTMAYSADGTRTYQ-------- 570 (1114)
Q Consensus 526 l~s~~~d~~i~~wd~~~~~~~~~~-----~~~----------------------~~~v~~~~~s~~g~~~~~-------- 570 (1114)
+.+.|.||.+.-..++..+..... ... .+.|..+.++.+......
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~ 229 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDA 229 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HH
T ss_pred eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcc
Confidence 778888888888887754433211 011 112223333332211110
Q ss_pred ----eecccceeEEEecCCCCEEEEEe---CC-------CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCC-EEEE
Q 001248 571 ----GFRKRSLGVVQFDTTKNRFLAAG---DD-------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAV 635 (1114)
Q Consensus 571 ----~~~~~~v~~~~~~~~~~~l~~~~---~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~ 635 (1114)
+-..+....+++++..++|++.- .+ ..|.++|+.+++.+..+.... .+.++.++.|.+ +|++
T Consensus 230 e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 230 EKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp HHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESSSS-EEEE
T ss_pred ccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccCCCcEEEE
Confidence 01112233467776666665532 11 248888999999999998643 478999999776 5554
Q ss_pred Ee-CCCcEEEEEccCCccceeeccc
Q 001248 636 ST-NDNGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 636 ~~-~dg~i~iwd~~~~~~~~~~~~~ 659 (1114)
.+ .++.+.+||..+| +.++.+++
T Consensus 307 ~~~~~~~l~v~D~~tG-k~~~~~~~ 330 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATG-KLVRSIEQ 330 (342)
T ss_dssp EETTTTEEEEEETTT---EEEEE--
T ss_pred EcCCCCeEEEEeCcCC-cEEeehhc
Confidence 44 5789999999999 66665543
No 330
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.0002 Score=74.40 Aligned_cols=223 Identities=13% Similarity=0.163 Sum_probs=130.4
Q ss_pred cccCCCCCeeEEEEcCCCC-eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
++.+|...|..++|||... +|..++.+.+|+|.|+.+...+. .+..| ..+++++|.-|..+ ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999777 78889999999999999977665 45566 78999999999887 7899999999999
Q ss_pred EeCCCCcc-eeEeec--cccCEEEEeeccC----CCceEEEEEecCCeEEEEEcCCCCC--eeeecCC-CCeeEEEEEec
Q 001248 494 WDATNGAK-QYIFEG--HEAPVYSVCPHHK----ENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAP-GRWCTTMAYSA 563 (1114)
Q Consensus 494 wd~~~~~~-~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~-~~~v~~~~~s~ 563 (1114)
||++..+- +..+.+ ...+|..++..+. +.|.+++....+ +.+|.+.-... ...+... .+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986432 222222 2234444332110 112344433332 34555432211 1111111 11222222222
Q ss_pred CCCeEEe----------------------------------eeccc---ceeEEEecCCCCEEEE-EeCCCeEEEEECCC
Q 001248 564 DGTRTYQ----------------------------------GFRKR---SLGVVQFDTTKNRFLA-AGDDFSIKFWDMDS 605 (1114)
Q Consensus 564 ~g~~~~~----------------------------------~~~~~---~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 605 (1114)
-.+.++. |.... .-..+.-.++.++++. +++.+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 1111110 00000 0011222334455554 55778999999999
Q ss_pred cceEEEeccCCCCCCcCeEEEcC-C-CCEEEEEeCCCcEEEEEcc
Q 001248 606 VQLLTSIDADGGLPASPRIRFNK-D-GCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 606 ~~~~~~~~~~~~~~~v~~~~~s~-d-~~~l~~~~~dg~i~iwd~~ 648 (1114)
++.++++... .+|..++... + +.+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999998765 2455555543 3 34555544 5678887644
No 331
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.17 E-value=4.6e-06 Score=58.39 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=34.1
Q ss_pred ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
+++.++. +|...|++|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~--~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFR--GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEE--SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEc--CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4455555 8999999999999999999999999999997
No 332
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.15 E-value=3.1e-06 Score=52.26 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhc
Q 001248 6 RELVFLILQFLDEEKFKETVHKLEQES 32 (1114)
Q Consensus 6 ~~v~~li~q~L~~~g~~~s~~~l~~Es 32 (1114)
+++++||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 579999999999999999999999996
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.11 E-value=0.0018 Score=75.44 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=93.3
Q ss_pred EEEecCCCcEEEEEeCCC------------------cEEEEEcccceEEEeecc--ccc----CeeEEEEc----CCCC-
Q 001248 865 LAFHPQDNNIIAIGMDDS------------------SIQIYNVRVDEVKSKLKG--HSK----RITGLAFS----HALN- 915 (1114)
Q Consensus 865 l~~sp~d~~~la~g~~dg------------------~v~iwd~~~~~~~~~l~~--h~~----~V~~l~~s----~d~~- 915 (1114)
.++.+ .+.++++++.++ .|.-+|..+|+.+...+. |.. ......+. -++.
T Consensus 222 pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 222 PTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred eeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 45555 456777777665 799999999998877642 210 00111111 2343
Q ss_pred --EEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE------------------EeCCeE
Q 001248 916 --VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV------------------VHETQL 975 (1114)
Q Consensus 916 --~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~------------------~~d~~i 975 (1114)
.++.++.+|.+...|..+++..-...... ..++.+| +...+. ..++.+
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l 368 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVE-----------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL 368 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEeec-----------cccccCC-ceEEEccccccccCcccccCCCCCCCceEE
Confidence 57788899999999999987543221110 1122223 111111 135677
Q ss_pred EEEEcCCCceeeeeecCCCC------cCe--eEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 976 AIFETTKLECVKQWVPRESS------API--THATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 976 ~iwd~~~~~~~~~~~~~~h~------~~v--~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
.-.|..+|+.+-+.....+. .+. ..+. -.+.+|++++.||.|+.+|..+|+.+-+.+
T Consensus 369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 78888888776655432111 111 1122 256788889999999999999999998876
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.11 E-value=0.0005 Score=76.21 Aligned_cols=283 Identities=11% Similarity=0.159 Sum_probs=142.0
Q ss_pred ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccc------------cccccccCC--------CCCccccccC
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA------------SVAPQLWQP--------PSGIMMTNDV 812 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~------------~~~~~~w~~--------~~g~~~~~~~ 812 (1114)
.|+.+.|+++..-|+++...|.|.||.+............. +..-.+-|+ ..|..-...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57899999998889999999999999998764432000000 001111111 1122111112
Q ss_pred CCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccc--cC------CCCCCeEEEEEec----CCC---cEEE
Q 001248 813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--FM------PPPPAATFLAFHP----QDN---NIIA 876 (1114)
Q Consensus 813 ~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~--~~------~~~~~i~~l~~sp----~d~---~~la 876 (1114)
.. ..++|++++.| |--++|+|. +|.+.|.|++....+.. +. .....++++.|+- +|+ -.|.
T Consensus 83 ~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred ec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22 47889999997 555999999 89999999987665543 11 1234688888872 133 4788
Q ss_pred EEeCCCcEEEEEccc---ceEEEeec----ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccc--ccc-CC
Q 001248 877 IGMDDSSIQIYNVRV---DEVKSKLK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQI-PT 946 (1114)
Q Consensus 877 ~g~~dg~v~iwd~~~---~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~~~-~~ 946 (1114)
+|+..|.+.+|.+.- +.....+. .+.++|..+ ...+.++++...... ++. ..
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I------------------~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSI------------------IPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EE------------------EEEETTT--B-B-BHHHHHGGGG
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEE------------------EEEECCCCCcccCchhHhhcccc
Confidence 899999999998742 21111111 122222222 222444333211111 110 01
Q ss_pred CCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEEC-----CCCCEEEEEEcCCeEEE
Q 001248 947 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFS-----CDSQLVYACFLDATVCV 1021 (1114)
Q Consensus 947 ~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~s~s~Dg~I~v 1021 (1114)
+. +...+++++++..++++...+.+...... ........+++- ..+..|++-..+|.|++
T Consensus 222 g~-------------~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 222 GI-------------SIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp T-----------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred CC-------------CcCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 10 01235666889999999998887765544 112223334442 35667888999999999
Q ss_pred EEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1022 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1022 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
|.+...+.+..+... ...+..... ..++++ +|+.++-.+ ...+.++.+-.
T Consensus 287 ~SLP~Lkei~~~~l~----~~~d~~~~~--~ssis~-~Gdi~~~~g-psE~~l~sv~~ 336 (395)
T PF08596_consen 287 YSLPSLKEIKSVSLP----PPLDSRRLS--SSSISR-NGDIFYWTG-PSEIQLFSVWG 336 (395)
T ss_dssp EETTT--EEEEEE-S----S---HHHHT--T-EE-T-TS-EEEE-S-SSEEEEEEEES
T ss_pred EECCCchHhhcccCC----Ccccccccc--ccEECC-CCCEEEEeC-cccEEEEEEEc
Confidence 999999999887732 111111122 455566 577666554 44555555533
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.07 E-value=0.0017 Score=75.76 Aligned_cols=245 Identities=10% Similarity=0.065 Sum_probs=138.8
Q ss_pred CEEEEEe-CCeEEEEEcCCCccccccCCCCCC-----eE-EEEEecCCCcEEEEEe---------CCCcEEEEEcccceE
Q 001248 831 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-----AT-FLAFHPQDNNIIAIGM---------DDSSIQIYNVRVDEV 894 (1114)
Q Consensus 831 ~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-----i~-~l~~sp~d~~~la~g~---------~dg~v~iwd~~~~~~ 894 (1114)
..++.++ ++.|.-+|..+++.+..+...... +. ...+. + .+++.++ .+|.|+-+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 4555555 899999999999988776543321 11 12222 2 3455554 367899999999998
Q ss_pred EEeeccccc--------------------Ce-eEEEEcCCCCEEEEEeCCC------------------cEEEEeCCCCc
Q 001248 895 KSKLKGHSK--------------------RI-TGLAFSHALNVLVSSGADS------------------QLCVWSSDGWE 935 (1114)
Q Consensus 895 ~~~l~~h~~--------------------~V-~~l~~s~d~~~l~s~s~D~------------------~v~iwd~~~~~ 935 (1114)
+..+..... .| .+.++.+.+..++.++.++ .|.-+|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 876643211 01 1234444566777777665 68888888877
Q ss_pred cccccccccCCCCC-CCCCCceEEEE-ccCCc---EEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCE
Q 001248 936 KQKNRFLQIPTGRT-PTAQSDTRVQF-HQDQI---HFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1009 (1114)
Q Consensus 936 ~~~~~~~~~~~~~~-~~~~~i~~v~f-spdg~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1009 (1114)
..-........... .......-... .-+|. .+++ +.+|.+..+|.++|+.+-..... ...++.+| ..
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~ 340 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GL 340 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ce
Confidence 54322111110000 00000000000 12343 3444 47899999999999987665421 11233444 33
Q ss_pred EEEE------------------EcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCc
Q 001248 1010 VYAC------------------FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGG 1071 (1114)
Q Consensus 1010 l~s~------------------s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~ 1071 (1114)
++.+ ..+|.+.-.|+.+|+.+-+..................-.+.. .+.+|++++.||.
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~ 417 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGY 417 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCe
Confidence 3332 236788899999999887766321000000000010001111 3578999999999
Q ss_pred EEEEeccCCCCcccCCC
Q 001248 1072 VHVFEPLESEGKWGVPP 1088 (1114)
Q Consensus 1072 v~vW~i~~~~~~~~~~~ 1088 (1114)
|+.+|..+|+..|+.+-
T Consensus 418 l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 418 FRAFDATTGKELWKFRT 434 (488)
T ss_pred EEEEECCCCceeeEEEC
Confidence 99999999998888753
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.07 E-value=0.0094 Score=66.48 Aligned_cols=105 Identities=17% Similarity=0.308 Sum_probs=63.2
Q ss_pred cCCCCeEEEEEe--------cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 367 HPVQQTLLLVGT--------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 367 spdg~~ll~tg~--------~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
|||++++|+.-. ..+.+.|||+++++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 789998666321 23578899999876543 22225578999999999999998
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccc----------------cCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAH----------------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h----------------~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
. ++.|.+++..++...+ + +..|- -+.-..+-|||||++++++. -.+..|..+.
T Consensus 61 ~-~~nly~~~~~~~~~~~-l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~-~d~~~v~~~~ 129 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQ-L-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR-FDEREVPEYP 129 (353)
T ss_dssp E-TTEEEEESSTTSEEEE-S-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE-EE-TTS-EEE
T ss_pred e-cCceEEEECCCCCeEE-e-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEE-ECCcCCceEE
Confidence 5 5779999988775432 1 22220 12236788999999632222 2334444443
No 337
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00044 Score=77.34 Aligned_cols=158 Identities=13% Similarity=0.111 Sum_probs=93.4
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
..+....++++..++++++..|.|.|+.++. ...+.-... + .....|...|++++|++|++
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~----------------t--~~d~~~~~rVTal~Ws~~~~ 137 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYV----------------T--PCDKSHKCRVTALEWSKNGM 137 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceee----------------c--cccccCCceEEEEEeccccc
Confidence 4556677888888888899999999887764 221111111 1 11112788999999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCc----cccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE--EEeecccccC
Q 001248 832 YVMSAS-GGKISLFNMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSKR 904 (1114)
Q Consensus 832 ~l~~~~-dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~--~~~l~~h~~~ 904 (1114)
.+.+|. .|+|.+-.+.+.. ..+.+......|..+.+.. +.+|++... .-.+++++.++. +.+-.-..-.
T Consensus 138 k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~--r~~Lc~tE~eti~QIG~k~R~~~~ 213 (726)
T KOG3621|consen 138 KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLT--RCILCQTEAETITQIGKKPRKSLI 213 (726)
T ss_pred EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhh--hhheeecchhHHHHhcCCCcCCcc
Confidence 999998 6999888887621 1223334456777777763 555554332 234455443321 1111101111
Q ss_pred eeEEEEcCC----CCEEEEEeCCCcEEEEeCCC
Q 001248 905 ITGLAFSHA----LNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 905 V~~l~~s~d----~~~l~s~s~D~~v~iwd~~~ 933 (1114)
-.+.+|-|. .+-.+.+++-| .|+|..+-
T Consensus 214 ~~GACF~~g~~~~q~~~IycaRPG-~RlWead~ 245 (726)
T KOG3621|consen 214 DFGACFFPGQCKAQKPQIYCARPG-LRLWEADF 245 (726)
T ss_pred ccceEEeeccccCCCceEEEecCC-CceEEeec
Confidence 244566554 34455566666 78887653
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.00072 Score=77.29 Aligned_cols=202 Identities=13% Similarity=0.169 Sum_probs=136.0
Q ss_pred EEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCC-eEEEEEecCCCcEEEEEeCCC-----cEEEEEcccc----
Q 001248 824 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD---- 892 (1114)
Q Consensus 824 v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~la~g~~dg-----~v~iwd~~~~---- 892 (1114)
-++++.+..+|.|+ +|.|.+.+- +.+.++.++.+... |+.+-... +..+|++.++|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678888999998 899888874 34555777777777 44444433 446777777665 4899998752
Q ss_pred --eEEE--eecc-----cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 893 --EVKS--KLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 893 --~~~~--~l~~-----h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
.++. .+.+ ...++.+++.|.+-+.+|.|-.+|.|..+.=+--.....+..-...+ ..+|+.++|..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~----~~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG----KEPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC----CCCceeeEEecC
Confidence 2331 2222 34678899999999999999999999888533211111111111222 258999999999
Q ss_pred CcE-EEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEe
Q 001248 964 QIH-FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 964 g~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1033 (1114)
++. +.++....|.+|.+.... ...-..+.|+..+.|-.|++....+++++ +..+.+|+.+....-..+
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 988 455788899999998444 44433557788999999987665455454 567999998755444333
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00054 Score=76.68 Aligned_cols=139 Identities=9% Similarity=0.033 Sum_probs=99.8
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
|...|.--+++..++| ++.|+.-|.+++|+-.+++.+.. ...+-.+.+..+.+|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 5556666677778886 99999999999999888776542 1223445677788999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeE--ee-ccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc----ceeEeeccc
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHL--EI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA----KQYIFEGHE 509 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~--~l-~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~h~ 509 (1114)
.|+..|.|.++-+..+....... .. ..|...|++++|++|+. .+++|...|+|.+-.+.+.. ..+.+....
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 99999999999887643322111 11 23778999999999999 69999999999988877621 112233344
Q ss_pred cCEEEEe
Q 001248 510 APVYSVC 516 (1114)
Q Consensus 510 ~~v~~~~ 516 (1114)
+.|..+.
T Consensus 171 s~IVQlD 177 (726)
T KOG3621|consen 171 SEIVQLD 177 (726)
T ss_pred cceEEee
Confidence 5565554
No 340
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.98 E-value=0.00014 Score=83.01 Aligned_cols=184 Identities=11% Similarity=0.112 Sum_probs=129.0
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecccc
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1114)
++..++-|+-...+..+|+.+.+..+ ...-..+.|.-|. .+++ ++.+|...|+|.+-|..+.+.++++..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR--~Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMR--YNNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee---eeeccCCceEEEE--ecCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 45567778777788899999877554 2222233454444 3566 789999999999999999999999999999
Q ss_pred CEEEEeeccCCCceEEEEEec---------CCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 511 PVYSVCPHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
.|.++.. .|++|+++|. |..|++||++....+.-+..+.++ ..+.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P----------------------~flr 272 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP----------------------QFLR 272 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc----------------------hhhh
Confidence 9998763 3468888875 556899999876655433332221 1233
Q ss_pred ecCCC-CEEEEEeCCCeEEEEECCC-cce-EEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 582 FDTTK-NRFLAAGDDFSIKFWDMDS-VQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 582 ~~~~~-~~l~~~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
|+|.- ..+++++..|...+-|..+ +.+ ......+.....+..+.+|++|+.++.|..+|.|.+|.-
T Consensus 273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 33322 3578888899999988332 111 222222222335889999999999999999999999973
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.00056 Score=77.61 Aligned_cols=187 Identities=13% Similarity=0.153 Sum_probs=123.1
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
..+++.+++ ++.++.++.+|.+++++.+.. .... + .|... .-+|.
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------~~~~-~---~~s~~------~~~Ge 84 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------PKTN-F---DHSSS------ILEGE 84 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-----------------------cccc-c---ccccc------ccCCc
Confidence 344445543 556888899999999875421 1000 0 02221 56899
Q ss_pred EEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecC----CCcEEEEEeCCCcEEEEEccc--ceEEEeecccccC
Q 001248 832 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKR 904 (1114)
Q Consensus 832 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~----d~~~la~g~~dg~v~iwd~~~--~~~~~~l~~h~~~ 904 (1114)
++++++ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-.= .+.-..+..-.++
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 999999 8999999998877766665 4567999999993 256888899888 77775331 1111245556789
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcC
Q 001248 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 981 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~ 981 (1114)
|.++.|. |+++|-++.+| |+|||+.+...... +..+............+.|.++.++ +.|-..+|+|..++
T Consensus 163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDRL-VIGWGDSVKICSIK 233 (846)
T ss_pred eEEEEec--CcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCeE-EEecCCeEEEEEEe
Confidence 9999995 88999999888 99999998654332 1111111111123356777777654 45555667777776
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.94 E-value=0.0027 Score=70.49 Aligned_cols=268 Identities=14% Similarity=0.195 Sum_probs=139.4
Q ss_pred CceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeE-E-----e------------eeeeeccCCCCc------cccccc
Q 001248 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV-L-----R------------NFKVWDLGACSM------PLQAAL 415 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~-~-----~------------~~~~~d~~~~~~------~~~~~~ 415 (1114)
.|+++.|+++..- |++|...|.|.||.+..++... . . +-++.|+..... -.+..+
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5899999999876 8999999999999987654432 0 0 112334332111 122234
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeecc------ccCCeeEEEec-----CCC-CeeEEE
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA------HVGGVNDIAFS-----HPN-KQLCVI 483 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~------h~~~V~~v~~s-----~d~-~~~~l~ 483 (1114)
+....++|++++.| |=-++|+|+.+|.+.|.|++....+.. ..+.. ....|+++.|+ .|+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55668999999998 666999999999999999977665543 23333 33468888886 222 124688
Q ss_pred EecCCCCEEEEeCC-C--Ccce----eEeeccccCEEEEeeccCCC-------------------ceEEEEEecCCeEEE
Q 001248 484 TCGDDKTIKVWDAT-N--GAKQ----YIFEGHEAPVYSVCPHHKEN-------------------IQFIFSTALDGKIKA 537 (1114)
Q Consensus 484 s~~~d~~i~iwd~~-~--~~~~----~~~~~h~~~v~~~~~~~~~~-------------------~~~l~s~~~d~~i~~ 537 (1114)
.|...|.+.+|.+. . +... .....+.++|..++.-...+ -+-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 88888999999775 1 2111 11124556666655221110 012444455777888
Q ss_pred EEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC-
Q 001248 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG- 616 (1114)
Q Consensus 538 wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 616 (1114)
+...+.+...........+..+.+-+-- . ...+..|++...+|.|++|.+-.-+.+..+....
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~---------------~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~ 303 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTI---------------S-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP 303 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-----------------EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred EeCCCCcccceeeccccccceEEEEeec---------------c-cCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence 8776554443332111112222221100 0 1122358888899999999999988888776542
Q ss_pred -CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 617 -GLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 617 -~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
....+...+++++|..++-.+. ..+.++.+
T Consensus 304 ~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 304 LDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp --HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred cccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 1123567788888887766544 34444443
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.94 E-value=0.002 Score=71.80 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=56.4
Q ss_pred EEEEe-eCCCEEEEEe--CCe--EEEEEcCCCccccccCCCCCCeEE-EEEecCCCcEEEEEeCCC----cEEEEEcccc
Q 001248 823 CFALS-KNDSYVMSAS--GGK--ISLFNMMTFKTMATFMPPPPAATF-LAFHPQDNNIIAIGMDDS----SIQIYNVRVD 892 (1114)
Q Consensus 823 ~v~~s-~d~~~l~~~~--dg~--i~iwd~~~~~~~~~~~~~~~~i~~-l~~sp~d~~~la~g~~dg----~v~iwd~~~~ 892 (1114)
...+. +++..++..+ +|- |.+++..++. .+.+....-.|+. +.++++++.+..++..++ .|+.-++..+
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 45554 6676666554 554 6666766554 3455555666754 778884455556666533 5555566623
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEE
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSS 920 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~ 920 (1114)
..+..+......-..+.|||++++++-.
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 3445565444433689999999998754
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.93 E-value=0.00084 Score=75.48 Aligned_cols=225 Identities=10% Similarity=0.107 Sum_probs=117.3
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
.....+.++|+|+.+++ +.+|...|+..... +. ...+.-..++|.+.++
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~----------------------r~--------k~~G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW----------------------RN--------KAFGSGLSFVWSSRNR 81 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETTTT----------------------EE--------EEEEE-SEEEE-TSSE
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEccCC----------------------cc--------cccCceeEEEEecCcc
Confidence 34678999999997777 77777777752100 00 0223455688888666
Q ss_pred EEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEc
Q 001248 832 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 911 (1114)
Q Consensus 832 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 911 (1114)
+.+.-..++|.|+.--.......+... ..+..+-. |.+|+..+.+ .|.+||..+++.+..+... +|..|.|+
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws 153 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS 153 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence 555444888999743333333344322 12333322 6777777654 8999999999999998744 38999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCc------cccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCce
Q 001248 912 HALNVLVSSGADSQLCVWSSDGWE------KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 985 (1114)
Q Consensus 912 ~d~~~l~s~s~D~~v~iwd~~~~~------~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~ 985 (1114)
++|.++|-.+.+ ++.|++.+... ......+...... ...|.+.+|..| .++.+...+++- +..|+.
T Consensus 154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~~~lkY--l~~Ge~ 225 (443)
T PF04053_consen 154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTSNHLKY--LVNGET 225 (443)
T ss_dssp TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TTEEEE--EETTEE
T ss_pred CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcCCeEEE--EEcCCc
Confidence 999999998866 58888765420 0000011111110 136788888877 333333336665 333332
Q ss_pred --eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 986 --VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 986 --~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
+..+ ..++.=+.+.+....++....|+.|..+.++...
T Consensus 226 ~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 226 GIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp EEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred ceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 2222 3466677777877788888888888888776443
No 345
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.90 E-value=1.4e-05 Score=61.78 Aligned_cols=52 Identities=31% Similarity=0.500 Sum_probs=42.5
Q ss_pred HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCH
Q 001248 38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 90 (1114)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~ 90 (1114)
+..++++|+.|+|+.|++.+........... ..+.|.|++|+|+||++.++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~-~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERN-SKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccC-CCchhHHHHHHHHHHHHcCCc
Confidence 6789999999999999999998844322222 259999999999999998764
No 346
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.90 E-value=1.8e-05 Score=53.31 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC
Q 001248 4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1114)
Q Consensus 4 ~~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~ 35 (1114)
.++++.++|+|||...||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 347
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.89 E-value=0.11 Score=61.34 Aligned_cols=467 Identities=10% Similarity=0.075 Sum_probs=233.9
Q ss_pred CeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee--ccccCEEEEeeccCCCce----EEEEEecCCeEEEEEc
Q 001248 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAPVYSVCPHHKENIQ----FIFSTALDGKIKAWLY 540 (1114)
Q Consensus 467 ~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~----~l~s~~~d~~i~~wd~ 540 (1114)
.++..+.+.+.. .++.++.++.+...++..+. ++... .....|.|+.++|.++++ +++.|..+..+.+
T Consensus 489 ~~ti~~~~~n~s--qVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~--- 562 (1096)
T KOG1897|consen 489 KITIGVVSANAS--QVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMI--- 562 (1096)
T ss_pred ceEEEEEeecce--EEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEE---
Confidence 344444444555 35555556777777777665 22222 235778888888765544 4555544443332
Q ss_pred CCCCCeeeecCCCCeeEEEEEecCCCeEEeee-----cccceeEEEecCCCCEEEEEeCCCeEEEEEC--CCcceEEEec
Q 001248 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF-----RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM--DSVQLLTSID 613 (1114)
Q Consensus 541 ~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~ 613 (1114)
+.+.||........ -...+-..++-.+..+|+++..||.+..|.+ .+|..-..-+
T Consensus 563 ------------------l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk 624 (1096)
T KOG1897|consen 563 ------------------LTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK 624 (1096)
T ss_pred ------------------EEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc
Confidence 23333332111110 1123334455555778999999999887754 4444333332
Q ss_pred cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccc
Q 001248 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 693 (1114)
Q Consensus 614 ~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1114)
.+-+..++.=-.|+..++.-+.+..|.-..+|..+.. -.+..+.-..-. ..+ .|..
T Consensus 625 ~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-Lv~spls~kev~-~~c------~f~s---------------- 680 (1096)
T KOG1897|consen 625 VTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-LVYSPLSLKEVN-HMC------PFNS---------------- 680 (1096)
T ss_pred cccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-EEEeccchHHhh-hhc------cccc----------------
Confidence 2333445555566665554444445555555543221 222111100000 000 0110
Q ss_pred ccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCc
Q 001248 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 773 (1114)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 773 (1114)
....-.+.....+.+++..++......... + |. ......+++.+....+.+.+.-.
T Consensus 681 ------------------~a~~d~l~~~~~~~l~i~tid~iqkl~irt-v--pl---~~~prrI~~q~~sl~~~v~s~r~ 736 (1096)
T KOG1897|consen 681 ------------------DAYPDSLASANGGALTIGTIDEIQKLHIRT-V--PL---GESPRRICYQESSLTFGVLSNRI 736 (1096)
T ss_pred ------------------ccCCceEEEecCCceEEEEecchhhcceee-e--cC---CCChhheEecccceEEEEEeccc
Confidence 111112222334567777666544332221 1 11 22344555555333333322211
Q ss_pred eEEEEeecccccCCCCCccccccccccCCCCCccccc-cCCCCCCCCCccEEEEeeC-CCEEEEEe-----------CCe
Q 001248 774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKN-DSYVMSAS-----------GGK 840 (1114)
Q Consensus 774 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~-~~~~~~~~~~v~~v~~s~d-~~~l~~~~-----------dg~ 840 (1114)
.... +. .+.......++++|..+-+.+.. .+.....-..+.++.|..| +.++++|. .|.
T Consensus 737 e~~~------~~--~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR 808 (1096)
T KOG1897|consen 737 ESSA------EY--YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR 808 (1096)
T ss_pred ccch------hh--cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce
Confidence 1000 00 00111111234455554443321 1111111223444457777 77888773 277
Q ss_pred EEEEEcCCCccccccCCC--CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEE
Q 001248 841 ISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 918 (1114)
Q Consensus 841 i~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~ 918 (1114)
|.+|....++.+.....+ .+.+.++..- +|++||. -+..|++|++.+.+.++.-..|...+..+...-.|..++
T Consensus 809 Iivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~ 884 (1096)
T KOG1897|consen 809 IIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIA 884 (1096)
T ss_pred EEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEE
Confidence 899988774444333222 2344444332 5677764 467899999999877777778889999999999999999
Q ss_pred EEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCc----------eeee
Q 001248 919 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE----------CVKQ 988 (1114)
Q Consensus 919 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~----------~~~~ 988 (1114)
.|.--+.+.+.-....+-.-....+- .+. ...+++.+-.+..++.+-.+|.+.+-...+.. ....
T Consensus 885 VgDlm~Sitll~y~~~eg~f~evArD--~~p---~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~ 959 (1096)
T KOG1897|consen 885 VGDLMRSITLLQYKGDEGNFEEVARD--YNP---NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGK 959 (1096)
T ss_pred EeeccceEEEEEEeccCCceEEeehh--hCc---cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceee
Confidence 99988888776655433111111111 111 35677777778787777666666654433210 0111
Q ss_pred eecC------CCCcCeeE--EEECCCCCEEEEEEcCCeEEEE
Q 001248 989 WVPR------ESSAPITH--ATFSCDSQLVYACFLDATVCVF 1022 (1114)
Q Consensus 989 ~~~~------~h~~~v~~--l~~s~dg~~l~s~s~Dg~I~vw 1022 (1114)
|..+ .|..-|.. -..+|-+..+..|..+|.|-+-
T Consensus 960 ~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 960 FHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred EEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEE
Confidence 1110 13333433 1334555557778888887664
No 348
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.89 E-value=0.0022 Score=68.70 Aligned_cols=175 Identities=14% Similarity=0.177 Sum_probs=87.8
Q ss_pred CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC---CC-cEEEEEccc-ceEEEeeccccc--CeeEEEEc
Q 001248 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DS-SIQIYNVRV-DEVKSKLKGHSK--RITGLAFS 911 (1114)
Q Consensus 839 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~---dg-~v~iwd~~~-~~~~~~l~~h~~--~V~~l~~s 911 (1114)
..|.-.|+.+|+....+. ....+..+.|||.|..+|+.+-+ +. .-|||-+.+ +.....+..|.. .+..=-|.
T Consensus 168 ~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred ceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 345556677766543333 45567889999988888877543 22 236776654 444455544432 34445689
Q ss_pred CCCCEEEEEe-----CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCC------------
Q 001248 912 HALNVLVSSG-----ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET------------ 973 (1114)
Q Consensus 912 ~d~~~l~s~s-----~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~------------ 973 (1114)
|||..|.--+ .+..|.-+|+.+++... ..... ....+-.++||++++. +.|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~~~~p--------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--LMEMP--------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--EEEE---------SEEEEEE-TTSSEEEEEE---------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceE--EEeCC--------ceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 9998776432 24457777777754321 22221 2346667899999988 5542
Q ss_pred ----eEEEEEcCCCceeeeee------cCCCCcCe--eEEEECCCCCEEE-EEEcCCeEEEEEc
Q 001248 974 ----QLAIFETTKLECVKQWV------PRESSAPI--THATFSCDSQLVY-ACFLDATVCVFSA 1024 (1114)
Q Consensus 974 ----~i~iwd~~~~~~~~~~~------~~~h~~~v--~~l~~s~dg~~l~-s~s~Dg~I~vwd~ 1024 (1114)
.|.++++.++....... ...|...+ -...|||||++++ ++...|...||-+
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 46678887766532211 11111112 3578999999865 5556777766643
No 349
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.86 E-value=0.045 Score=64.06 Aligned_cols=115 Identities=11% Similarity=0.019 Sum_probs=65.5
Q ss_pred EEEEecCCCCEEEEeCCCCcceeEeeccc-cCEEE---Eeec---cCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCC
Q 001248 481 CVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYS---VCPH---HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG 553 (1114)
Q Consensus 481 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~---~~~~---~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 553 (1114)
.++.++.++.|.-.|..+|+.+.++.... ..+.. ..+. ..-.+..++.++.|+.+...|.++++.+.......
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~ 150 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGD 150 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccccc
Confidence 35666677889999999999887765311 11111 0000 00012467778889999999999888776544321
Q ss_pred Cee-EEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe------CCCeEEEEECCCcceEEEecc
Q 001248 554 RWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG------DDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 554 ~~v-~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
... ..+.-+| .+ .+..++.+. .+|.|..+|.++|+.+..+..
T Consensus 151 ~~~~~~~tssP---------------~v----~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 151 YKAGYTITAAP---------------LV----VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ccccccccCCc---------------EE----ECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 100 0000000 00 012344443 368999999999998877643
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.84 E-value=0.002 Score=66.17 Aligned_cols=216 Identities=10% Similarity=0.075 Sum_probs=116.1
Q ss_pred ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccc-ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 854 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 854 ~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
.+.+-...+..++|+|+++.++|+....+.|..++. +|+.+..+.-. .+..-+|++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 345556679999999966889999999999999996 47777665332 2457789998888777776678999999985
Q ss_pred CCccc--ccc--ccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCC---Cceeeee-----e-cCCCCcCe
Q 001248 933 GWEKQ--KNR--FLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQW-----V-PRESSAPI 998 (1114)
Q Consensus 933 ~~~~~--~~~--~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~---~~~~~~~-----~-~~~h~~~v 998 (1114)
..... ... .+... -..........++|.+.++.|.++ ...-..+|.+.. ...+... . .......+
T Consensus 95 ~~~~~~~~~~~~~~~l~-~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLG-FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE----S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecc-cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 43211 111 11111 111122457999999987777665 333455665543 1111111 0 11234568
Q ss_pred eEEEECCCCC-EEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEE
Q 001248 999 THATFSCDSQ-LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1075 (1114)
Q Consensus 999 ~~l~~s~dg~-~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1075 (1114)
.++++.|... +++.......|.++| .+|+.+..+......+ |-....-.+-.|+|.+ +|+ |...++-+..+++
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-gl~~~~~QpEGIa~d~-~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-GLSKDIPQPEGIAFDP-DGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G-SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-CcccccCCccEEEECC-CCC-EEEEcCCceEEEe
Confidence 8999988654 556666778899999 7788777665222111 0001113355799998 564 5555666666554
No 351
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.84 E-value=0.028 Score=65.67 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=88.1
Q ss_pred cEEEEEcccceEEEeecccccCeeE---------EEEcCCCC---EEEEEeCCCcEEEEeCCCCcccccccc--------
Q 001248 883 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHALN---VLVSSGADSQLCVWSSDGWEKQKNRFL-------- 942 (1114)
Q Consensus 883 ~v~iwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~~---~l~s~s~D~~v~iwd~~~~~~~~~~~~-------- 942 (1114)
.|.-.|++||+....++.....+.. +....+|+ .++.++.+|.+.+.|-.+++.......
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 5677788999988777652222221 22224665 788999999999999998876311000
Q ss_pred --ccCCCCC--------------------C-CCCC--ceEEEEccCCcEEEE-EeC------------------------
Q 001248 943 --QIPTGRT--------------------P-TAQS--DTRVQFHQDQIHFLV-VHE------------------------ 972 (1114)
Q Consensus 943 --~~~~~~~--------------------~-~~~~--i~~v~fspdg~~l~~-~~d------------------------ 972 (1114)
....+.. + ..+. =..++++|+..++.+ ..+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 0000000 0 0000 023566776665554 222
Q ss_pred ---------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 973 ---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 973 ---------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.|.-+|+.+++..-...... ....+. +.-.+.+++.++.||.++.+|..||+.+.+++
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 357778888887766544211 111111 12255577778889999999999999998887
No 352
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.83 E-value=0.00023 Score=78.52 Aligned_cols=129 Identities=11% Similarity=0.094 Sum_probs=92.5
Q ss_pred cceeEeccCCCCceEEEEcCCCCeEEEEE----ecCCc----EEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCC
Q 001248 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVG----TNVGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420 (1114)
Q Consensus 349 ~~~~~~~~h~~~v~~v~~spdg~~ll~tg----~~dg~----v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 420 (1114)
-+++.....+....++.||-...+.+.|- +.+|. -.+|++..++... ..+ +--...
T Consensus 196 lEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr-vsv---------------tsipL~ 259 (545)
T PF11768_consen 196 LEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR-VSV---------------TSIPLP 259 (545)
T ss_pred EEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE-EEE---------------EEEecC
Confidence 34555556667778999998655545543 22443 4567776544322 111 122456
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc
Q 001248 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500 (1114)
Q Consensus 421 ~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 500 (1114)
..|.|++++|+.+.|+.|+.||+|++||...+... +..+.-..+.++|.|+|. ++++|+..|.+.+||+.-.-
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCc
Confidence 68999999999999999999999999999876432 223445678999999999 89999999999999987443
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.83 E-value=0.0082 Score=67.78 Aligned_cols=199 Identities=15% Similarity=0.126 Sum_probs=107.8
Q ss_pred EEEeeCCCEEEEEeCC------------eEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 824 FALSKNDSYVMSASGG------------KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 824 v~~s~d~~~l~~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
++.+|.|--+|...|. .|+||+.. |+.+..+.-..+.+.++.|+. +. .|++-..||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence 4555555555555433 59999874 556655433337899999987 54 455667899999999863
Q ss_pred ce------EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccc-ccCCCCC--CCCCCceE-EEEc
Q 001248 892 DE------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRT--PTAQSDTR-VQFH 961 (1114)
Q Consensus 892 ~~------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~--~~~~~i~~-v~fs 961 (1114)
.. .+....-....+....+..+| +|.-..++.+.+.+-..... ....+ ..+.... ........ ..++
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccc-hhhccccCCCcccccccccccccceEee
Confidence 22 111112222333333444455 33333444443332221110 10111 1111000 00001111 3455
Q ss_pred cCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 962 QDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 962 pdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
.+....+. +.++.+.+.+....+. + ...+++..|++||+|++||.-..+|.+.|...+-.+.++.+.
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred cCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 55554444 4555566444332211 1 124689999999999999999999999999877777776665
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0073 Score=67.80 Aligned_cols=205 Identities=13% Similarity=0.143 Sum_probs=144.8
Q ss_pred ccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC---CCcEEEEEcccceEE
Q 001248 821 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDEVK 895 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~---dg~v~iwd~~~~~~~ 895 (1114)
...+++++++..+.... ++.|.+.|..+........... ....++++| +++.+.++.. ++++.+.|..+++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45678888888665554 6899999987766665554322 677899999 6655554444 689999999998888
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCceEEEEccCCcEEEEE--e
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H 971 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~ 971 (1114)
.....-..+ ..++++|+|..+..+. .+++|.+.|..+..... ........+ .....+.++|+|.++.+. .
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-----TGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-----CCCceEEECCCCCEEEEEecc
Confidence 775433344 8899999999665554 78899999977744321 000001111 244789999999987774 2
Q ss_pred C--CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-CeEEEEEcCCCeeeEEeC
Q 001248 972 E--TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 972 d--~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-g~I~vwd~~~~~~~~~~~ 1034 (1114)
+ +.+...|..++.....-...+-. ....+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 2 58889999888777652222223 56778999999999887544 889999999988887665
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.76 E-value=0.018 Score=59.27 Aligned_cols=187 Identities=9% Similarity=0.105 Sum_probs=103.4
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
-...+..++|.|+...|+++....+.|...+.+ |+.+.+.. +.+ -+..-.|++..++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 455699999999988888888888999888874 67665432 233 23677889988888888
Q ss_pred EEeCCCeEEEEEccCCce---ee--eeEeec---cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC---CcceeEe
Q 001248 437 VAYSRHIVQIYSYHGGDE---VR--QHLEID---AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYIF 505 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~---~~--~~~~l~---~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~ 505 (1114)
+--.++.+.++++..... .. +...+. .++..+-.++|.+.++. |+.+-...-..++.+.. +..+...
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 766689999999843221 11 111221 35567999999999885 34445555556665543 2221111
Q ss_pred --------eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCC---------CeeEEEEEecCCC
Q 001248 506 --------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------RWCTTMAYSADGT 566 (1114)
Q Consensus 506 --------~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~~g~ 566 (1114)
......+.++++++. .+++++....++.|..+|. .++....+.... .+...+++.++|+
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 123355778888765 4577888888888888883 334333332222 2455666666665
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.76 E-value=0.0038 Score=70.25 Aligned_cols=221 Identities=16% Similarity=0.157 Sum_probs=118.0
Q ss_pred CCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 818 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
...+..+.++|+|++++++++|...|+......... .+.-...+|.+ +++ +|+-..+++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 344788999999999999989999999843322211 23456688988 555 66666688999974333333233
Q ss_pred ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEE
Q 001248 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 977 (1114)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~i 977 (1114)
++.. ..+..|-. |.+|...+.+ .|.+||+++++... .... ..|..+.|+++|.+++...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~-----~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIR-----RIDV-----SAVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEE-----EESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceee-----EEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence 3321 12333433 8888877655 79999999865422 2211 1478999999999999987888888
Q ss_pred EEcCCC-----------ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee--eEEeCCCcccCCCCC
Q 001248 978 FETTKL-----------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAGVS 1044 (1114)
Q Consensus 978 wd~~~~-----------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~--~~~~~~~~~~~~~~~ 1044 (1114)
++.... ..+.... .-...|.+.+|..| .++-.+.. .++. +-.|+. ++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld---------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIH--EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD---------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEE--EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S----------
T ss_pred EEecchhcccccccCchhceEEEE--EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC----------
Confidence 775433 0111111 11457888899766 44334334 6665 334432 32222
Q ss_pred CCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1045 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1045 ~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
..++ -+.+.+ +.+.+.....|+.|..+.+...+
T Consensus 233 -~~~y--llgy~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 233 -KPLY--LLGYLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp -S--E--EEEEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred -CceE--EEEEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 1244 455566 34788889999999988876543
No 357
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.75 E-value=0.013 Score=65.19 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=79.4
Q ss_pred ceEEEEcc-CCcEEEE-----EeCC----eEEEEEcCCCceee--eeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEE
Q 001248 955 DTRVQFHQ-DQIHFLV-----VHET----QLAIFETTKLECVK--QWVPRESSAPITHATFSCDSQLVYACFLDATVCVF 1022 (1114)
Q Consensus 955 i~~v~fsp-dg~~l~~-----~~d~----~i~iwd~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vw 1022 (1114)
...+.||- ++..+.+ +.+| .-++|+....+.-+ .... .....|.+.+++|+...|+.|+.||+|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 35667765 3344433 1233 24567766543322 1111 347789999999999999999999999999
Q ss_pred EcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1023 SAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1023 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
|...+..... . ....|..++|+| +|.++++|+.-|.+.+||+.-..
T Consensus 287 D~~~~~t~~~-k-----------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 287 DTTRGVTLLA-K-----------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCCeeeee-e-----------ecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 9877743322 1 115566899999 68999999999999999997665
No 358
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.002 Score=72.36 Aligned_cols=164 Identities=16% Similarity=0.163 Sum_probs=97.7
Q ss_pred Eecc-CCCCceEEEEcCCCCeEEEEEecC---CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE
Q 001248 353 RTLN-QGSSPMSMDFHPVQQTLLLVGTNV---GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1114)
Q Consensus 353 ~~~~-h~~~v~~v~~spdg~~ll~tg~~d---g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1114)
+.+. -...+..-+|+|+++.+....-.. ..+.++|+++++.....+ + .+.-..-+|
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~---~g~~~~P~f 245 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------F---NGNNGAPAF 245 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------c---CCccCCccC
Confidence 3444 556778899999999744442222 359999999887665321 1 223445789
Q ss_pred cCCCCeEEEEe-CCCe--EEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCC--EEEEeCCCCccee
Q 001248 429 SPDGSLFGVAY-SRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQY 503 (1114)
Q Consensus 429 spdg~~las~~-~dg~--i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~ 503 (1114)
||||++||.+. .||. |.+.|+.++...+ +..-.+.-..-.|+|||+. ++++.+..|. |.+.|++.+.. .
T Consensus 246 spDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~-~ 319 (425)
T COG0823 246 SPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV-T 319 (425)
T ss_pred CCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce-e
Confidence 99999988764 4555 5666777665222 3333333347899999997 3445555565 66666665544 3
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecC-Ce--EEEEEcCCCC
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALD-GK--IKAWLYDNLG 544 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~--i~~wd~~~~~ 544 (1114)
.+....+.-..-. .++||++++..+.. |. |.+.|+.+..
T Consensus 320 riT~~~~~~~~p~--~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 320 RLTFSGGGNSNPV--WSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EeeccCCCCcCcc--CCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 3332222222333 35667777777643 43 5555554443
No 359
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.69 E-value=0.028 Score=60.48 Aligned_cols=287 Identities=15% Similarity=0.096 Sum_probs=133.8
Q ss_pred EEccCcceeeeccc-CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEE
Q 001248 758 IFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 836 (1114)
Q Consensus 758 ~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 836 (1114)
+|.++|+.|+.++. +|.-.+|-+ |+.+++..+. +.. .........++++.+.++..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QL--Tdg-~g~~~~g~~~s~~~~~~~Yv 98 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQL--TDG-PGDNTFGGFLSPDDRALYYV 98 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----S-S-B-TTT-EE-TTSSEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEEC--ccC-CCCCccceEEecCCCeEEEE
Confidence 56788877666555 554444432 3334444332 110 11222346677888888766
Q ss_pred e-CCeEEEEEcCCCccccccCCCCCCeEEEEEec-CCCcEEEEEe---C-------------------CCcEEEEEcccc
Q 001248 837 S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP-QDNNIIAIGM---D-------------------DSSIQIYNVRVD 892 (1114)
Q Consensus 837 ~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp-~d~~~la~g~---~-------------------dg~v~iwd~~~~ 892 (1114)
. +..|+-.|+.+.+....+......+-...|.. .|+..++-.- . ...|.-.|+.+|
T Consensus 99 ~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG 178 (386)
T PF14583_consen 99 KNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG 178 (386)
T ss_dssp ETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred ECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence 5 67899999999876655555555554455542 1455543221 1 123555677777
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEEeC----CCc-EEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGA----DSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~----D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
+....+. -..-+..+.|||....++.=+. |.. -+||-+++.......+..... .-.+..=-|.|||..|
T Consensus 179 ~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 179 ERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGSTI 252 (386)
T ss_dssp -EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS-E
T ss_pred ceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCCEE
Confidence 6544443 3455678899996655554333 332 366766543222211111111 1245566899999988
Q ss_pred EE-Ee-----CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC----------------eEEEEEcC
Q 001248 968 LV-VH-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------------TVCVFSAA 1025 (1114)
Q Consensus 968 ~~-~~-----d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg----------------~I~vwd~~ 1025 (1114)
.. +. +..|.-+|..+++...... ..+-..+..++||++++-=+.|. .|+++++.
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 77 32 3357778888886643322 22455677789999887433332 57778888
Q ss_pred CCeeeE--EeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1026 NLKLRC--RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1026 ~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.++... +...+-..-.++ .. +.=-...|+|++..+|.+....|...|+-+.-
T Consensus 329 ~~~~~~l~~h~~sw~v~~~~-~q-~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 329 AGRFRKLARHDTSWKVLDGD-RQ-VTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp TTEEEEEEE-------BTTB-SS-TT----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred cCceeeeeeccCcceeecCC-Cc-cCCCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence 777542 211000001111 11 11124889995444566777778777765543
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.60 E-value=7.8e-05 Score=81.88 Aligned_cols=253 Identities=15% Similarity=0.177 Sum_probs=153.6
Q ss_pred CCCccEEEEeeCCC--EEEEEe-CCeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEe----CCCcEEEEE
Q 001248 818 EEAVPCFALSKNDS--YVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGM----DDSSIQIYN 888 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~--~l~~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~----~dg~v~iwd 888 (1114)
...+.|++...+.+ .+++|. +|.|.+-......-- ...+++...+++++|++-|.++||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34466666654443 667777 799888877643222 234567788999999998888999885 456899999
Q ss_pred cccc--eE--EEeecc-cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc-
Q 001248 889 VRVD--EV--KSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ- 962 (1114)
Q Consensus 889 ~~~~--~~--~~~l~~-h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp- 962 (1114)
+.++ -+ -..|.+ -.....+++|-.|.+++.+|...+.+.++|+........ .++. ..+..+...|
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-svnT--------k~vqG~tVdp~ 206 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNT--------KYVQGITVDPF 206 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-hhhh--------hhcccceecCC
Confidence 9876 11 122322 334566899999999999999999999999874211111 1111 1456788888
Q ss_pred CCcEEEEEeCCeEEEEEc-CCCce-eeeeecCC--CCcCeeEEEECCCCC-EEEEEEcC-CeEEEEEcCCC------eee
Q 001248 963 DQIHFLVVHETQLAIFET-TKLEC-VKQWVPRE--SSAPITHATFSCDSQ-LVYACFLD-ATVCVFSAANL------KLR 1030 (1114)
Q Consensus 963 dg~~l~~~~d~~i~iwd~-~~~~~-~~~~~~~~--h~~~v~~l~~s~dg~-~l~s~s~D-g~I~vwd~~~~------~~~ 1030 (1114)
.+.|++...|+.|.+||. .+-+- +.++.... -...+..++|+|-.. .|++.+.| ++|+.+|+..- +..
T Consensus 207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~ 286 (783)
T KOG1008|consen 207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNS 286 (783)
T ss_pred CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccccc
Confidence 889999988999999993 33222 22221111 123489999999543 35555544 78999987421 111
Q ss_pred EEeCCCcccCCCCCC--CCccceEEEecCCC-CCeEEEEeCCCcEEEEeccCCC
Q 001248 1031 CRINPSAYLPAGVSS--SNVHPLVIAAHPQE-PNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1031 ~~~~~~~~~~~~~~~--~~v~~~~~~~~~~d-~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
..+......+-.|.+ ..|. ...||+.+ -+..+++-..-++.-+++.+.-
T Consensus 287 ~~~~~~s~~~~q~~~~~s~I~--~f~wH~~s~~er~il~~~nl~~~Df~V~e~~ 338 (783)
T KOG1008|consen 287 VFVNYESKYPVQPNSQCSGID--FFTWHTASPTERQILGVINLQPKDFSVHEEV 338 (783)
T ss_pred ceeeeccccccccccccccee--ecCcCcCCccceeEEeeccCChhhccchhhe
Confidence 111111111112222 2244 66777654 2345555555666666665543
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.14 Score=58.04 Aligned_cols=136 Identities=18% Similarity=0.237 Sum_probs=78.2
Q ss_pred EEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccc-c
Q 001248 825 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-S 902 (1114)
Q Consensus 825 ~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~ 902 (1114)
.++.+....+... ++.+.+.+....+. +. ..+++..+++|| ++++||.-..+|.+.+.+..-.+.+..+... .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3455555555544 56677555433222 22 246899999999 9999999999999999886655556555443 3
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001248 903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 982 (1114)
Q Consensus 903 ~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~ 982 (1114)
.....+.|.-+...++.- ...|.+..... ..+.|.-++..++...-..++|+....
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~ 315 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS 315 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence 455677776443222222 23344443221 224444445444444444477776665
Q ss_pred Cceeeee
Q 001248 983 LECVKQW 989 (1114)
Q Consensus 983 ~~~~~~~ 989 (1114)
.+.++..
T Consensus 316 ~~~l~~V 322 (410)
T PF04841_consen 316 HEFLQRV 322 (410)
T ss_pred eEEEEEC
Confidence 5554443
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.53 E-value=0.0074 Score=71.66 Aligned_cols=150 Identities=14% Similarity=0.166 Sum_probs=95.2
Q ss_pred CCeeEEEEecCCCCEEEEeCCCCcceeEeeccccC-EEEEeeccC---CCceEEEEEecCCeEEEEEcCCCCCe-eeecC
Q 001248 477 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHK---ENIQFIFSTALDGKIKAWLYDNLGSR-VDYEA 551 (1114)
Q Consensus 477 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~ 551 (1114)
++.++|........|+-.|++.|+.+..+..|... |..++-... -+....+.|-.++.+..||.+-.+.. ..-..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33334555566788999999999999999887754 777652211 01235677778889999999864321 11001
Q ss_pred CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCC
Q 001248 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 631 (1114)
Q Consensus 552 ~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 631 (1114)
+. + .....+.|++-+.+| ++++|+.+|.||+||--..+....+++-+ .+|..+..+.||+
T Consensus 572 k~---------------Y--~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~DGk 631 (794)
T PF08553_consen 572 KQ---------------Y--SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTADGK 631 (794)
T ss_pred cc---------------c--ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecCCCc
Confidence 00 0 111233344333333 49999999999999953333233333333 4899999999999
Q ss_pred EEEEEeCCCcEEEEEc
Q 001248 632 LLAVSTNDNGIKILAT 647 (1114)
Q Consensus 632 ~l~~~~~dg~i~iwd~ 647 (1114)
++++.+. ..+.+++.
T Consensus 632 wilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 632 WILATCK-TYLLLIDT 646 (794)
T ss_pred EEEEeec-ceEEEEEE
Confidence 9887665 56777765
No 363
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.53 E-value=3.8e-05 Score=84.18 Aligned_cols=204 Identities=15% Similarity=0.241 Sum_probs=126.2
Q ss_pred CCCCceEEEEcCCCC-eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCCe
Q 001248 357 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~-~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 434 (1114)
....+.|++++-+.+ .|++.|..+|.|.+-.+....-. ...+..+|....++++|++ |...
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 445677887766544 58999999999999887543221 1124567888999999999 7788
Q ss_pred EEEEe----CCCeEEEEEccCCc--eeeeeEeec-cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc-ceeEee
Q 001248 435 FGVAY----SRHIVQIYSYHGGD--EVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE 506 (1114)
Q Consensus 435 las~~----~dg~i~iwd~~~~~--~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~ 506 (1114)
||+|- .|..+.|||+.++- ..... .+. +-.....+++|..+.+ ++.+|...+.+.++|++... ....+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence 88873 35679999998862 11111 122 2344567899998877 78899888899999987322 11111
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEE-cCCCCCeeeecCC-----CCeeEEEEEecCCCeEEeeecccceeEE
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL-YDNLGSRVDYEAP-----GRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd-~~~~~~~~~~~~~-----~~~v~~~~~s~~g~~~~~~~~~~~v~~~ 580 (1114)
.+..+..+.+.|- .++++++-. ||.|.+|| ....+.......+ ...+..++|.|...
T Consensus 194 -nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt-------------- 256 (783)
T KOG1008|consen 194 -NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT-------------- 256 (783)
T ss_pred -hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------
Confidence 1223344444341 224666655 99999999 4443333211111 12355666665432
Q ss_pred EecCCCCEEEEE-eCCCeEEEEECC
Q 001248 581 QFDTTKNRFLAA-GDDFSIKFWDMD 604 (1114)
Q Consensus 581 ~~~~~~~~l~~~-~~dg~i~iwd~~ 604 (1114)
..+++. -..++|+.+++.
T Consensus 257 ------glla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 257 ------GLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ------chhhhhccCcceEEEeccc
Confidence 123333 356788888874
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.091 Score=59.07 Aligned_cols=241 Identities=16% Similarity=0.162 Sum_probs=156.9
Q ss_pred CccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
....+.+.+++..+.... .+.+...+................-..+++++...+..+....+..|.+.|..+.+.+..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 456678888886655554 334555555422111112211134567788884445677776779999999877766655
Q ss_pred ecccccCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eC
Q 001248 898 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 972 (1114)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d 972 (1114)
..--. .-..++++++++.+..+.. ++++.+.|-.++..... .+.+.. ...++++|+|..+.+. .+
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~----~~vG~~-----P~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT----IPVGNT-----PTGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE----EecCCC-----cceEEECCCCCeEEEEecCC
Confidence 43222 4568999999987776655 67788888777554332 222221 2789999999988774 58
Q ss_pred CeEEEEEcCCCceeeeeec---CCCCcCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCCeeeEEeCCCcccCCCCCCC
Q 001248 973 TQLAIFETTKLECVKQWVP---RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSS 1046 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
+.+.++|..+....+ ... -.-......+.++|||.++.+.... +.+.+.|..++.....-.+. ..
T Consensus 182 ~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~--------~~ 252 (381)
T COG3391 182 NTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV--------GS 252 (381)
T ss_pred CeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc--------cc
Confidence 899999987776653 110 0113456789999999987766654 48999999998887652211 11
Q ss_pred CccceEEEecCCCCCeEEEEeC-CCcEEEEeccCCC
Q 001248 1047 NVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESE 1081 (1114)
Q Consensus 1047 ~v~~~~~~~~~~d~~~l~s~~~-Dg~v~vW~i~~~~ 1081 (1114)
. .+..+..+| ++..+.+... .+.+.+-|-.+..
T Consensus 253 ~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 253 G-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred C-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence 1 234588888 5777777644 4888888887766
No 365
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.51 E-value=0.013 Score=65.92 Aligned_cols=175 Identities=14% Similarity=0.085 Sum_probs=107.1
Q ss_pred eEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe---CC-CcEEEEEcccceEEEe--ecccccCeeEEEEcCC
Q 001248 840 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---DD-SSIQIYNVRVDEVKSK--LKGHSKRITGLAFSHA 913 (1114)
Q Consensus 840 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~---~d-g~v~iwd~~~~~~~~~--l~~h~~~V~~l~~s~d 913 (1114)
.+.+-|.. +.....+......+..-+|+| ++..++.-. .. ..++++++.+++.... +.++. ..-.|+||
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspD 248 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPD 248 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCC
Confidence 34444544 444445554555677778888 666554432 22 4699999998764433 34443 35689999
Q ss_pred CCEEEE-EeCCCcE--EEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCC----eEEEEEcCCCcee
Q 001248 914 LNVLVS-SGADSQL--CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECV 986 (1114)
Q Consensus 914 ~~~l~s-~s~D~~v--~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~----~i~iwd~~~~~~~ 986 (1114)
|+.|+. ...|+.. .+.|+.++... . +....+ .-..-.|+|||++++..+|. .|.+++.......
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~--~-Lt~~~g------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLP--R-LTNGFG------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCcce--e-cccCCc------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 988774 4566664 55566654421 1 222211 22466899999999985443 5888888877653
Q ss_pred eeeecCCCCcCeeEEEECCCCCEEEEEEcC-Ce--EEEEEcCCCeeeE
Q 001248 987 KQWVPRESSAPITHATFSCDSQLVYACFLD-AT--VCVFSAANLKLRC 1031 (1114)
Q Consensus 987 ~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-g~--I~vwd~~~~~~~~ 1031 (1114)
+... .+ +.-..-.|||||++|+..+.. |. |.+.|+.++....
T Consensus 320 riT~-~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 320 RLTF-SG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred Eeec-cC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 3322 12 111277899999999877643 44 7777777666433
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.49 E-value=0.039 Score=59.31 Aligned_cols=235 Identities=11% Similarity=0.148 Sum_probs=133.7
Q ss_pred cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCe
Q 001248 761 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 840 (1114)
Q Consensus 761 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~ 840 (1114)
..++.|+.|+++| ++++++... ..... . .....|..+...++-+.+++-+|+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~---------------------~~~~~--i---~~~~~I~ql~vl~~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP---------------------SKPTR--I---LKLSSITQLSVLPELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC---------------------cccee--E---eecceEEEEEEecccCEEEEEcCCc
Confidence 4567789998888 788876210 00000 0 1334489999999999999999999
Q ss_pred EEEEEcCCCcccccc--------------CCCCCCeEEEE--EecCCCcEEEEEeCCCcEEEEEcccc-----eEEEeec
Q 001248 841 ISLFNMMTFKTMATF--------------MPPPPAATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLK 899 (1114)
Q Consensus 841 i~iwd~~~~~~~~~~--------------~~~~~~i~~l~--~sp~d~~~la~g~~dg~v~iwd~~~~-----~~~~~l~ 899 (1114)
+.++++......... ......+...+ -...+..+|+++. ...|.+|..... +..+++.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~ 136 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS 136 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence 999998765443311 11122344444 1121345555555 448998887653 3445554
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCC----CCCCCCCCceEEEEccCCcEEEEEeCCeE
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT----GRTPTAQSDTRVQFHQDQIHFLVVHETQL 975 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~v~fspdg~~l~~~~d~~i 975 (1114)
-.+.+.+++|. ++.++.|..++ ..+.|+.++............ ........ ..+.--+++.+|++- +. +
T Consensus 137 -lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~Ll~~-~~-~ 209 (275)
T PF00780_consen 137 -LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKP-LGIFQLSDNEFLLCY-DN-I 209 (275)
T ss_pred -cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCc-eEEEEeCCceEEEEe-cc-e
Confidence 34778899998 56777777665 888899875542211111000 00000112 223233345666653 32 3
Q ss_pred EEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 976 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 976 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
-+|=-..|+..+.... .-...+.++++ ...||++.+ ++.|.||++.+++++..+.
T Consensus 210 g~fv~~~G~~~r~~~i-~W~~~p~~~~~--~~pyli~~~-~~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 210 GVFVNKNGEPSRKSTI-QWSSAPQSVAY--SSPYLIAFS-SNSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEEcCCCCcCcccEE-EcCCchhEEEE--ECCEEEEEC-CCEEEEEECcCCcEEEEEE
Confidence 3332334443331100 11345666766 445777665 4669999999999998876
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.43 E-value=0.12 Score=59.29 Aligned_cols=245 Identities=14% Similarity=0.138 Sum_probs=123.5
Q ss_pred ceEEEEcCCCCeEEEEEecCC----cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 361 PMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+....+||||++++++-+..| +|++.|+++|+.+.. .+ .. ..-..++|++|++.|.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEEE
Confidence 346789999998666656666 499999999977652 11 11 0122399999999887
Q ss_pred EEeCCC-----------eEEEEEccCCceeeeeEeeccccCC--eeEEEecCCCCeeEEEEecC-C-CCEEEEeCCCC--
Q 001248 437 VAYSRH-----------IVQIYSYHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCGD-D-KTIKVWDATNG-- 499 (1114)
Q Consensus 437 s~~~dg-----------~i~iwd~~~~~~~~~~~~l~~h~~~--V~~v~~s~d~~~~~l~s~~~-d-~~i~iwd~~~~-- 499 (1114)
....+. .|..|++.+...-. ...+.+.... ...+..++|++.+++.+.+. + ..+.+-|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~ 264 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS 264 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence 764332 37778877654321 1234444433 56889999999743333332 2 34788888764
Q ss_pred --cceeEeeccccCE-EEEeeccCCCceEEEEEec---CCeEEEEEcCCCCC---eeeecCCCCeeEEEEEecCCCeEEe
Q 001248 500 --AKQYIFEGHEAPV-YSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 500 --~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
.....+......+ ..+... ++.+++.... .+.|...++..... ...+..+..
T Consensus 265 ~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~---------------- 325 (414)
T PF02897_consen 265 PDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE---------------- 325 (414)
T ss_dssp SS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS----------------
T ss_pred CcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC----------------
Confidence 2333333333333 333321 2233332221 34555556655432 111111111
Q ss_pred eecccceeEEEecCCCCEEEEE-eC--CCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEE-eC---CCcEE
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAA-GD--DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TN---DNGIK 643 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~~---dg~i~ 643 (1114)
......+...+++|+.. .. ...|+++++..+.....+..... ..|..+...+++..+... +. -+++.
T Consensus 326 -----~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y 399 (414)
T PF02897_consen 326 -----DVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVY 399 (414)
T ss_dssp -----SEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEE
T ss_pred -----ceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEE
Confidence 11112222223344443 33 34588899884455555544322 234455555555544332 21 35677
Q ss_pred EEEccCCc
Q 001248 644 ILATSDGI 651 (1114)
Q Consensus 644 iwd~~~~~ 651 (1114)
.||+.+++
T Consensus 400 ~~d~~t~~ 407 (414)
T PF02897_consen 400 RYDLATGE 407 (414)
T ss_dssp EEETTTTC
T ss_pred EEECCCCC
Confidence 78887773
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.43 E-value=0.023 Score=66.76 Aligned_cols=169 Identities=12% Similarity=0.049 Sum_probs=96.1
Q ss_pred CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe------CCC--cEEEEEcccceEEEeecccccCeeEEE
Q 001248 838 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM------DDS--SIQIYNVRVDEVKSKLKGHSKRITGLA 909 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~ 909 (1114)
+|.+.-.+-.....+....+....+...+++| +|+.+|... .|+ .|.+++. .+.......+. ..+.-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCce
Confidence 55554443222222222223334678999999 777776655 244 4555554 23322223332 378899
Q ss_pred EcCCCCEEEEEeCC------------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEE
Q 001248 910 FSHALNVLVSSGAD------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 977 (1114)
Q Consensus 910 ~s~d~~~l~s~s~D------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~i 977 (1114)
|+|||+.|++.+.. +.+.+.+++.++... . ....|..+.|||||+.++...+++|.+
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-----~------~~g~Issl~wSpDG~RiA~i~~g~v~V 472 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-----R------VPGPISELQLSRDGVRAAMIIGGKVYL 472 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-----c------cCCCcCeEEECCCCCEEEEEECCEEEE
Confidence 99999988877533 222222343322211 0 124689999999999999966788877
Q ss_pred ---EEcCCCceeee-----eecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001248 978 ---FETTKLECVKQ-----WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1114)
Q Consensus 978 ---wd~~~~~~~~~-----~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~ 1024 (1114)
-....|. ... +. .+-...+.++.|..++.++ ++..++...+|.+
T Consensus 473 a~Vvr~~~G~-~~l~~~~~l~-~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 473 AVVEQTEDGQ-YALTNPREVG-PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEEEeCCCCc-eeecccEEee-cccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 4444554 111 11 1223346889999999965 5555555555554
No 369
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0013 Score=69.03 Aligned_cols=108 Identities=10% Similarity=0.159 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc----------HHHHHHHhhccCHHHHHHHhccCc-cccCcccchhhHH
Q 001248 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFF 74 (1114)
Q Consensus 6 ~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~~~~~~-~~~~~~~~~~~~~ 74 (1114)
+.|+.+|..|+...|..+.+..|-+|+|...+ +..+-+++..|+-.-|++.+..-. .+.. ....+-|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~--~~s~LE~ 194 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE--KSSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc--ccccHHH
Confidence 34689999999999999999999999998752 778899999999999999998752 2221 1225889
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHHhhcccccccCHHHHHHH
Q 001248 75 EIRKQKYLEALDKHDRA--KAVEILVKDLKVFSTFNEELFKEI 115 (1114)
Q Consensus 75 ~l~~~~~lell~~~~~~--~A~~~l~~~l~~~~~~~~~~~~~l 115 (1114)
.|..+.|++++..|... +|+...|..++|+........+.+
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQkl 237 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKL 237 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHH
Confidence 99999999999999988 999999999999966554444433
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.32 E-value=0.01 Score=69.66 Aligned_cols=187 Identities=12% Similarity=0.054 Sum_probs=103.7
Q ss_pred CCccEEEEeeCCCEEEEEe-------CC--eEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC--------
Q 001248 819 EAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-------- 881 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d-------- 881 (1114)
..+.+.+++|||+.++... |. .|.+++.. +.. ..+.. ....+.-.|+| +|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3577899999999888654 33 45565642 222 33322 22478889999 77766665432
Q ss_pred ----CcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEE---EeCCCCccccccccccCCCCCCCCCC
Q 001248 882 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV---WSSDGWEKQKNRFLQIPTGRTPTAQS 954 (1114)
Q Consensus 882 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1114)
+.+++.++..++... ...+.|..+.|||||..+|... ++.|.+ -....++...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 234333444433322 2345799999999999988766 467776 343444311111111111111 23
Q ss_pred ceEEEEccCCcEEEEEeCC--eEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeE
Q 001248 955 DTRVQFHQDQIHFLVVHET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019 (1114)
Q Consensus 955 i~~v~fspdg~~l~~~~d~--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I 1019 (1114)
+..+.|..++.+++...++ .+...++.... ...+........+.+++-+++ .|+.+..+|.+
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 5789999999976554333 34444444222 222121123556777777653 35555556633
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.065 Score=57.31 Aligned_cols=221 Identities=13% Similarity=0.083 Sum_probs=126.3
Q ss_pred EEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec---
Q 001248 825 ALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--- 899 (1114)
Q Consensus 825 ~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~--- 899 (1114)
.|.++...|.... .+.|.-|+..+++. ..+.. ...+.++..-. .+..|+++. .-+++++..++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~-p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPS-PGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEEC-CCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 4566777666555 68899999876543 22222 22334443333 333444332 346777776655432221
Q ss_pred -cc-ccCeeEEEEcCCCCEEEEEeC-----C----CcEEEEeCCC-CccccccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 900 -GH-SKRITGLAFSHALNVLVSSGA-----D----SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 900 -~h-~~~V~~l~~s~d~~~l~s~s~-----D----~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
+. ...-+.+...|+|.+.++... . ..=.+|-+.. +.. ......+. ..-+.++||||++.|
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-----~~l~~~~~---~~~NGla~SpDg~tl 177 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV-----VRLLDDDL---TIPNGLAFSPDGKTL 177 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE-----EEeecCcE---EecCceEECCCCCEE
Confidence 11 245567888999988776544 1 1113444442 111 11121111 134789999999888
Q ss_pred EEE--eCCeEEEEEcCC--Cc---eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC-eEEEEEcCCCeeeEEeCCCccc
Q 001248 968 LVV--HETQLAIFETTK--LE---CVKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYL 1039 (1114)
Q Consensus 968 ~~~--~d~~i~iwd~~~--~~---~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg-~I~vwd~~~~~~~~~~~~~~~~ 1039 (1114)
..+ ..+.|.-|+... +. .........+.+..-.++...+|.+.+++-.+| .|.+|+.+ |+++..+. +
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~----l 252 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK----L 252 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE----C
Confidence 875 447777777652 21 111122223456677888888998876555554 89999988 99998888 4
Q ss_pred CCCCCCCCccceEEEecCCCCCeEEEEeCC
Q 001248 1040 PAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1069 (1114)
Q Consensus 1040 ~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D 1069 (1114)
|. ..+.+++|-..+.+.|.+.+..
T Consensus 253 P~------~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 253 PV------KRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CC------CCCccceEeCCCcCEEEEEecC
Confidence 42 2233677875455666555433
No 372
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.25 E-value=0.5 Score=52.65 Aligned_cols=294 Identities=13% Similarity=0.099 Sum_probs=155.8
Q ss_pred CcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee-----CCCEEEEE
Q 001248 762 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-----NDSYVMSA 836 (1114)
Q Consensus 762 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~-----d~~~l~~~ 836 (1114)
+...+++|+..|.++||+.....+.+....+.. ....+|..+..-. +...||+-
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---------------------~l~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---------------------QLKDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE---------------------ecCCcEEEEEeccccCCCCcceEEEe
Confidence 345789999999999998754443333221111 1344555554432 34467776
Q ss_pred eCCeEEEEEcCC--Cc-------cccccCCCC--CCeEEEEEecCC----CcEEEEEeCCCcEEEEEcccceEEEeeccc
Q 001248 837 SGGKISLFNMMT--FK-------TMATFMPPP--PAATFLAFHPQD----NNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 901 (1114)
Q Consensus 837 ~dg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~sp~d----~~~la~g~~dg~v~iwd~~~~~~~~~l~~h 901 (1114)
.-.++.||.+.. +. .+..+..|. .....++.-|.+ ..+|.+-+.||.+.+|+-+.-.....+.+
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 678888888731 11 111111121 122233333322 46899999999999999776554444444
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccc-------ccCCCCC----------CCCCCceEEEEccCC
Q 001248 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-------QIPTGRT----------PTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------~~~~~~~----------~~~~~i~~v~fspdg 964 (1114)
.---..++|.+.-..+++++.+..+.-|....-........ ....+.. ...-.+..+.++...
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~ 253 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSE 253 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCC
Confidence 22224578888888999999998898887532100000000 0000000 000122333444444
Q ss_pred cEEEEEeCCeEEEEEcCCCceeeeeecCCCCcC--eeEEEECCCCC---EEEEEEcCCeEEEEEcCCCeeeEEeCCCccc
Q 001248 965 IHFLVVHETQLAIFETTKLECVKQWVPRESSAP--ITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAYL 1039 (1114)
Q Consensus 965 ~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~--v~~l~~s~dg~---~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~ 1039 (1114)
..+++-....+.+.+.. |........+..... +..+....++. .+++++.++++.||.=.+ ++-... +
T Consensus 254 ~~IvvLger~Lf~l~~~-G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~----l 326 (418)
T PF14727_consen 254 SDIVVLGERSLFCLKDN-GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQ----L 326 (418)
T ss_pred ceEEEEecceEEEEcCC-CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecC----C
Confidence 45555556677776663 454444433221111 11121122322 478888999999997433 332222 2
Q ss_pred CCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcccCCCC
Q 001248 1040 PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1089 (1114)
Q Consensus 1040 ~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~~~ 1089 (1114)
+.. .| .+.++..++-...|++-+.+|.+.+-=+-|.......|++
T Consensus 327 ~~~----PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p~~ 371 (418)
T PF14727_consen 327 PHV----PV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVPPL 371 (418)
T ss_pred CCC----CE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCccccCCCc
Confidence 211 12 2233333333568999999999999888776644444333
No 373
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.22 E-value=0.076 Score=61.05 Aligned_cols=239 Identities=12% Similarity=0.102 Sum_probs=127.1
Q ss_pred ccEEEEeeCCCEEEEEe--CC----eEEEEEcCCCcccccc-CCCCCCeEEEEEecCCCcEEEEEe-CC----------C
Q 001248 821 VPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGM-DD----------S 882 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~--dg----~i~iwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~la~g~-~d----------g 882 (1114)
+...++||||+++|.+- .| .|+++|+.+++.+... .. .....+.|.+ +++.|+... .+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence 34678999999999773 33 4999999998765432 21 1123499999 655554443 22 2
Q ss_pred cEEEEEcccceE--EEeecccccC--eeEEEEcCCCCEEEEEeCC----CcEEEEeCCCCc--cccccccccCCCCCCCC
Q 001248 883 SIQIYNVRVDEV--KSKLKGHSKR--ITGLAFSHALNVLVSSGAD----SQLCVWSSDGWE--KQKNRFLQIPTGRTPTA 952 (1114)
Q Consensus 883 ~v~iwd~~~~~~--~~~l~~h~~~--V~~l~~s~d~~~l~s~s~D----~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~ 952 (1114)
.|+.|.+.+... ...+...... ...+..++|+++|+..+.. ..+.+.++.... .....++....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~------ 276 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE------ 276 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS------
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC------
Confidence 478888876532 2333333322 5688999999998754332 236777777641 11122222111
Q ss_pred CCceEEEEccCCcEEEEE----eCCeEEEEEcCCCce---eeeeecCCCCc--CeeEEEECCCCCEE-EEEEcCC--eEE
Q 001248 953 QSDTRVQFHQDQIHFLVV----HETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQLV-YACFLDA--TVC 1020 (1114)
Q Consensus 953 ~~i~~v~fspdg~~l~~~----~d~~i~iwd~~~~~~---~~~~~~~~h~~--~v~~l~~s~dg~~l-~s~s~Dg--~I~ 1020 (1114)
..+....-..++.+++.+ ..+.|...++.+... ...+. .|.. .+..+.. .+.+| +....++ .|+
T Consensus 277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence 123333333345454443 345777788877663 21333 3344 3444444 44454 4455554 489
Q ss_pred EEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC---CcEEEEeccCCC
Q 001248 1021 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1081 (1114)
Q Consensus 1021 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D---g~v~vW~i~~~~ 1081 (1114)
+|++..+.....+. ++.. ..+. .+...+....+.++.++- ++++.+|+.+++
T Consensus 353 v~~~~~~~~~~~~~----~p~~---g~v~--~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 353 VYDLDDGKESREIP----LPEA---GSVS--GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEETT-TEEEEEEE----SSSS---SEEE--EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEECCCCcEEeeec----CCcc---eEEe--ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99999445444444 2211 1122 444444333444444432 688999999887
No 374
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.062 Score=54.02 Aligned_cols=254 Identities=14% Similarity=0.181 Sum_probs=132.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCc-EEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~-v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
-...--.++|+|...+-++.+-.-|+ ..++|.+++....... ......+-+|. .|||||.+|
T Consensus 66 lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-----------s~~~RHfyGHG------vfs~dG~~L 128 (366)
T COG3490 66 LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-----------SQEGRHFYGHG------VFSPDGRLL 128 (366)
T ss_pred cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-----------cccCceeeccc------ccCCCCcEE
Confidence 33444568888887765666666554 6789988877654311 11122355663 699999999
Q ss_pred EEEeCC-----CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC----------------CCCEEEE
Q 001248 436 GVAYSR-----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----------------DKTIKVW 494 (1114)
Q Consensus 436 as~~~d-----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~----------------d~~i~iw 494 (1114)
...-+| |.|-|||...+ .....++..|.-.-..+.|.+||+.+.++-|+- .-++.+-
T Consensus 129 YATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvll 206 (366)
T COG3490 129 YATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLL 206 (366)
T ss_pred EeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEE
Confidence 876443 78999999843 455567888888889999999999533333310 1234455
Q ss_pred eCCCCcceeE--ee--ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEe
Q 001248 495 DATNGAKQYI--FE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 495 d~~~~~~~~~--~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
|..+|..+.. +. -+...|..++. ..||..++.+-..|. -...-.+.-......++.-+...++..
T Consensus 207 d~atG~liekh~Lp~~l~~lSiRHld~--g~dgtvwfgcQy~G~-----~~d~ppLvg~~~~g~~l~~~~~pee~~---- 275 (366)
T COG3490 207 DAATGNLIEKHTLPASLRQLSIRHLDI--GRDGTVWFGCQYRGP-----RNDLPPLVGHFRKGEPLEFLDLPEEQT---- 275 (366)
T ss_pred eccccchhhhccCchhhhhcceeeeee--CCCCcEEEEEEeeCC-----CccCCcceeeccCCCcCcccCCCHHHH----
Confidence 5555555432 22 23344555553 333322222211110 000000000000011111110000000
Q ss_pred eecccceeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEE
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd 646 (1114)
..-.+-+..++.+-+..+++..+ ..+...+||..+|..+..-... .+..++- ...-+++.+.+|.+.++.
T Consensus 276 ~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~----daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 276 AAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP----DAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred HHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc----cccccee--ccCceEEecCCceEEecc
Confidence 00011233344554444454444 5667789999999887665432 2223333 334466667778888773
No 375
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.12 Score=55.45 Aligned_cols=232 Identities=13% Similarity=0.063 Sum_probs=131.6
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCC
Q 001248 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 442 (1114)
Q Consensus 363 ~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 442 (1114)
+..|.+++..|+.+--..+.|.-|+..+++... +. +.+.+.++..-.++..|+++. .|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-HG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-cc
Confidence 446778888778887778999999998775543 11 122344444444444555442 33
Q ss_pred eEEEEEccCCceeeeeEeec-cc-cCCeeEEEecCCCCeeEEEEecC------C---CCEEEEeCC-CCcceeEeecccc
Q 001248 443 IVQIYSYHGGDEVRQHLEID-AH-VGGVNDIAFSHPNKQLCVITCGD------D---KTIKVWDAT-NGAKQYIFEGHEA 510 (1114)
Q Consensus 443 ~i~iwd~~~~~~~~~~~~l~-~h-~~~V~~v~~s~d~~~~~l~s~~~------d---~~i~iwd~~-~~~~~~~~~~h~~ 510 (1114)
+.+++.+++..+....... +. ....+.+...|+|. +.++... + ..-.+|-+. .+..++.+..+-.
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~ 163 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT 163 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence 7778877665432222221 11 23567889999998 3333222 1 112344444 5666666666666
Q ss_pred CEEEEeeccCCCceEEEEE-ecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 511 PVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
.-+.++|+++. +.++.. +..+.|.-|++...... .... ... .......+..--++.+.+|++.
T Consensus 164 ~~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~----~~~~-~~~---------~~~~~~~G~PDG~~vDadG~lw 227 (307)
T COG3386 164 IPNGLAFSPDG--KTLYVADTPANRIHRYDLDPATGP----IGGR-RGF---------VDFDEEPGLPDGMAVDADGNLW 227 (307)
T ss_pred ecCceEECCCC--CEEEEEeCCCCeEEEEecCcccCc----cCCc-ceE---------EEccCCCCCCCceEEeCCCCEE
Confidence 67888987654 455444 45688888877631000 0000 000 0111111222235566677766
Q ss_pred EEEeCCC-eEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeC
Q 001248 590 LAAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 638 (1114)
Q Consensus 590 ~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~ 638 (1114)
+++...| .|.+|+.+ |+.+..+..+. ..+++++|-- +.+.|++.+.
T Consensus 228 ~~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EecccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEec
Confidence 5544443 99999998 99998888763 3577888864 4555554443
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.11 E-value=0.032 Score=66.49 Aligned_cols=146 Identities=10% Similarity=0.115 Sum_probs=98.6
Q ss_pred CCcEEEEE-eCCCcEEEEEcccceEEEeecccccC-eeEEEEcCC-------CCEEEEEeCCCcEEEEeCCCCccccccc
Q 001248 871 DNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHA-------LNVLVSSGADSQLCVWSSDGWEKQKNRF 941 (1114)
Q Consensus 871 d~~~la~g-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d-------~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 941 (1114)
+.++|..- .....|+-.|++.|+.+..+..|... |..+ .|+ ...-+.|-.+..+..||.+-... .+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~---k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN---KL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCC---ce
Confidence 44455443 35678999999999999999988754 5444 443 23345566778899999875321 11
Q ss_pred cccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEE
Q 001248 942 LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1021 (1114)
Q Consensus 942 ~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~v 1021 (1114)
...............+++-+.+|..++.+.+|.||+||-. |..-++.. .+-+.+|.+|..+.||++|++.+ +.++.+
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~l-p~lG~pI~~iDvt~DGkwilaTc-~tyLlL 643 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTAL-PGLGDPIIGIDVTADGKWILATC-KTYLLL 643 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcC-CCCCCCeeEEEecCCCcEEEEee-cceEEE
Confidence 1100001112235678888888887777899999999954 43333333 25578999999999999988665 678888
Q ss_pred EEc
Q 001248 1022 FSA 1024 (1114)
Q Consensus 1022 wd~ 1024 (1114)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 886
No 377
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0026 Score=70.54 Aligned_cols=96 Identities=17% Similarity=0.414 Sum_probs=73.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCee-EEEEcCCCCeE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-RVIWSPDGSLF 435 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~l 435 (1114)
-.-.|.-+.|+|.-. |+|++..+|.|.+..++ ... +|+ +.-|+-.|+ +++|.|||++|
T Consensus 19 l~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qR-------lwt------------ip~p~~~v~~sL~W~~DGkll 77 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQR-------LWT------------IPIPGENVTASLCWRPDGKLL 77 (665)
T ss_pred cccceEEEEEcCccc-hhheeccCCcEEEEEec-cce-------eEe------------ccCCCCccceeeeecCCCCEE
Confidence 345678899999988 79999999999998877 332 343 333444565 99999999999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecC
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH 475 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~ 475 (1114)
|+|-.||+|++-|+.++..+... ...-...|.++-|++
T Consensus 78 aVg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 78 AVGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred EEEecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence 99999999999999998866531 122345677777763
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.046 Score=59.65 Aligned_cols=150 Identities=12% Similarity=0.119 Sum_probs=93.4
Q ss_pred CeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEE-----EEEecCCeEEEEEcCCCCCeeeecCC
Q 001248 478 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-----FSTALDGKIKAWLYDNLGSRVDYEAP 552 (1114)
Q Consensus 478 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~d~~i~~wd~~~~~~~~~~~~~ 552 (1114)
..+++.++.....++--|++.|+.+..+.-|.. |.-+.+.+...+..+ +.|-.|..|.-||.+-...-
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~------ 417 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN------ 417 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc------
Confidence 334677788888899999999999999987766 666666555444333 34556888999998743221
Q ss_pred CCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCE
Q 001248 553 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL 632 (1114)
Q Consensus 553 ~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 632 (1114)
-+++..... + .+...+.|.+-..+ .++++|+.+|.|++||--..+....+++-+ .+|..+..+.||++
T Consensus 418 -----kl~~~q~kq--y--~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG--~~I~hVdvtadGKw 485 (644)
T KOG2395|consen 418 -----KLAVVQSKQ--Y--STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLG--DAIKHVDVTADGKW 485 (644)
T ss_pred -----eeeeeeccc--c--ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccC--CceeeEEeeccCcE
Confidence 011100000 0 00112222222222 359999999999999973333334445444 37999999999999
Q ss_pred EEEEeCCCcEEEEEc
Q 001248 633 LAVSTNDNGIKILAT 647 (1114)
Q Consensus 633 l~~~~~dg~i~iwd~ 647 (1114)
+++.+. ..+.+.++
T Consensus 486 il~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 486 ILATCK-TYLLLIDT 499 (644)
T ss_pred EEEecc-cEEEEEEE
Confidence 876554 56666654
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.29 Score=49.48 Aligned_cols=234 Identities=15% Similarity=0.113 Sum_probs=134.9
Q ss_pred cEEEEeeCCCE-EEEEe-CCe-EEEEEcCCCccccccCCCCCC--eEEEEEecCCCcEEEEEeCC-----CcEEEEEccc
Q 001248 822 PCFALSKNDSY-VMSAS-GGK-ISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV 891 (1114)
Q Consensus 822 ~~v~~s~d~~~-l~~~~-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~la~g~~d-----g~v~iwd~~~ 891 (1114)
..++++|-... ++.+- -|+ ..++|..+.+.+.++...++. --.=.||| ||.+|...-.| |.|-|||...
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 34667765543 33443 354 778898887776655432222 11235899 89888765433 6899999875
Q ss_pred c-eEEEeecccccCeeEEEEcCCCCEEEEEeC------C------------CcEEEEeCCCCccccccccccCCCCCCCC
Q 001248 892 D-EVKSKLKGHSKRITGLAFSHALNVLVSSGA------D------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTA 952 (1114)
Q Consensus 892 ~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------D------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 952 (1114)
+ +.+.++..|.-.--.+.|.+||+.|+.+.. | -++.+.|..+++...+..+.....+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~---- 225 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ---- 225 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----
Confidence 4 566788888777778999999999987643 1 1233444344443332222211111
Q ss_pred CCceEEEEccCCcEEEEE-eCC-----eEEEEEcCCCceeeeeecC-----CCCcCeeEEEECCCCCEEEEEEcC-CeEE
Q 001248 953 QSDTRVQFHQDQIHFLVV-HET-----QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLD-ATVC 1020 (1114)
Q Consensus 953 ~~i~~v~fspdg~~l~~~-~d~-----~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~s~D-g~I~ 1020 (1114)
.++..++.-+||..++.+ ..| --.+=-...++.+.-+... .-...|-+++...+..+++..+-. +...
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 367888888888877653 111 1111112223332222211 113457788888777777666654 5688
Q ss_pred EEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEE
Q 001248 1021 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1075 (1114)
Q Consensus 1021 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1075 (1114)
+||..+|..+.... +++. . .++- ...=+++.+.+|.+.+.
T Consensus 306 i~da~tG~vv~~a~----l~da------a--Gva~---~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 306 IWDAATGAVVSEAA----LPDA------A--GVAA---AKGGFAVSSGQGRIIFY 345 (366)
T ss_pred EEEcCCCcEEeccc----cccc------c--ccee---ccCceEEecCCceEEec
Confidence 99999999886544 2221 1 1221 12335555668888776
No 380
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.03 E-value=0.079 Score=58.35 Aligned_cols=175 Identities=15% Similarity=0.128 Sum_probs=102.3
Q ss_pred CeEEEEEcCCCccccccCCCC-CCeEEEE---EecC---CCcEEEEEeC----------CCcEEEEEcccc----eEEEe
Q 001248 839 GKISLFNMMTFKTMATFMPPP-PAATFLA---FHPQ---DNNIIAIGMD----------DSSIQIYNVRVD----EVKSK 897 (1114)
Q Consensus 839 g~i~iwd~~~~~~~~~~~~~~-~~i~~l~---~sp~---d~~~la~g~~----------dg~v~iwd~~~~----~~~~~ 897 (1114)
..|++.|..+.+.+.++.-.. ..+++++ |..+ ...+|++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 457888888777765543222 2344433 3321 1578888763 289999999884 12222
Q ss_pred e--cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-cccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCC
Q 001248 898 L--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE-KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 973 (1114)
Q Consensus 898 l--~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~ 973 (1114)
+ ....++|++++-- .++ |+.+. .+.|.+|++...+ .... ..... .+........+.+++++ ..+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~---~~~~~------~~~i~sl~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKK---AFYDS------PFYITSLSVFKNYILVGDAMK 149 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEE---EEE-B------SSSEEEEEEETTEEEEEESSS
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhh---heecc------eEEEEEEeccccEEEEEEccc
Confidence 2 2357889998876 444 44443 4779999999866 2211 11111 22344444446688776 456
Q ss_pred eEEEEEcCC-CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001248 974 QLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 974 ~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
.+.++.... ...+..+..+.....++++.|-+|++.++++..+|.+.++...
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 666664332 2223333323346678999998777799999999999999886
No 381
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0034 Score=69.67 Aligned_cols=94 Identities=10% Similarity=0.130 Sum_probs=76.7
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee-EEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 001248 859 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 937 (1114)
Q Consensus 859 ~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~ 937 (1114)
...+..+.|+| .-.++|++..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|++++...
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 45688899999 88999999999999999998 777888887877787 9999999999999999999999999997654
Q ss_pred cccccccCCCCCCCCCCceEEEEc
Q 001248 938 KNRFLQIPTGRTPTAQSDTRVQFH 961 (1114)
Q Consensus 938 ~~~~~~~~~~~~~~~~~i~~v~fs 961 (1114)
....... ...|.++-|+
T Consensus 98 ~~~~~s~-------e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSV-------ETDISKGIWD 114 (665)
T ss_pred ecccccc-------ccchheeecc
Confidence 4321111 1356666665
No 382
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.98 E-value=0.13 Score=57.05 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=61.2
Q ss_pred EEEEcCCCCeEEEEeCCCeEEE---EEccC-C--ce---eeeeEeecccc-CCeeEEEecCC---C------CeeEEEEe
Q 001248 425 RVIWSPDGSLFGVAYSRHIVQI---YSYHG-G--DE---VRQHLEIDAHV-GGVNDIAFSHP---N------KQLCVITC 485 (1114)
Q Consensus 425 ~l~~spdg~~las~~~dg~i~i---wd~~~-~--~~---~~~~~~l~~h~-~~V~~v~~s~d---~------~~~~l~s~ 485 (1114)
.++.+|++++||.+..+..+.+ |+... + .. +.-...+.... ..|+++.+-|= . ....++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4688999999999988776665 64421 1 11 11111222211 45666665432 1 12279999
Q ss_pred cCCCCEEEEeCCCCcceeEeeccccCEEEEeecc
Q 001248 486 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH 519 (1114)
Q Consensus 486 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 519 (1114)
..+|.|++|. ++|..+..-.-|..+|..+....
T Consensus 86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence 9999999999 68888876667899999887543
No 383
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.92 E-value=1.7 Score=52.94 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=52.1
Q ss_pred CCeEEEEEcCCCceeeeeecCCCC----------------cCeeEEEECCCCCEEEE-EEcCCeEEEEEcCCCeeeEEeC
Q 001248 972 ETQLAIFETTKLECVKQWVPRESS----------------APITHATFSCDSQLVYA-CFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 972 d~~i~iwd~~~~~~~~~~~~~~h~----------------~~v~~l~~s~dg~~l~s-~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
-|.|.-+|+.+++.+-......+. .+...=...-.|.+++. |+.|+.++-+|.++|+.+-+.+
T Consensus 640 ~G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d~~l~A~D~~tGk~lW~~~ 719 (764)
T TIGR03074 640 WGYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQDNYLRAYDLSTGKELWKAR 719 (764)
T ss_pred cEEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCCCCEEEEEECCCCceeeEee
Confidence 367888888888876655432110 11111112335667765 7789999999999999998877
Q ss_pred CCcccCCCCCCCCccceEEEec-CCCCCeEEEE
Q 001248 1035 PSAYLPAGVSSSNVHPLVIAAH-PQEPNEFALG 1066 (1114)
Q Consensus 1035 ~~~~~~~~~~~~~v~~~~~~~~-~~d~~~l~s~ 1066 (1114)
++.+ +...-+.|. .+..++++..
T Consensus 720 ----l~~~-----~~a~P~tY~~~~GkQYVvi~ 743 (764)
T TIGR03074 720 ----LPAG-----GQATPMTYMGKDGKQYVVIV 743 (764)
T ss_pred ----CCCC-----cccCCEEEEecCCEEEEEEE
Confidence 5554 222235555 4333455543
No 384
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.90 E-value=0.0023 Score=43.96 Aligned_cols=39 Identities=33% Similarity=0.559 Sum_probs=34.6
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
++.+..+..|...|+++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 385
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.87 E-value=0.22 Score=54.88 Aligned_cols=222 Identities=13% Similarity=0.092 Sum_probs=118.0
Q ss_pred CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC----CCeEEEEeC---------C-CeEEE
Q 001248 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLFGVAYS---------R-HIVQI 446 (1114)
Q Consensus 381 g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~las~~~---------d-g~i~i 446 (1114)
..|++.|..+.+.+....+.- ..+-..+..+.|..+ ..+|++|+. . |.|.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~---------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v 66 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP---------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV 66 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET---------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred cEEEEEeCCCCeEEEEEECCC---------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence 357888888877765544321 111113334444443 567887753 2 88999
Q ss_pred EEccCC----ceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc-ceeEee-ccccCEEEEeeccC
Q 001248 447 YSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE-GHEAPVYSVCPHHK 520 (1114)
Q Consensus 447 wd~~~~----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~h~~~v~~~~~~~~ 520 (1114)
+++... ..+..... ....++|++++-- ++. ++++. .+.|.+|++...+ ....-. .....+.++...
T Consensus 67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-- 138 (321)
T PF03178_consen 67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-- 138 (321)
T ss_dssp EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence 999984 23333222 2457889998877 343 34444 3789999998877 333221 123356666532
Q ss_pred CCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEE
Q 001248 521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600 (1114)
Q Consensus 521 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 600 (1114)
. ++++.|...+.+.++.++...... .-++-+.. ...+..+.+-++++.++++..+|.+.+
T Consensus 139 ~--~~I~vgD~~~sv~~~~~~~~~~~l---------~~va~d~~---------~~~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 139 K--NYILVGDAMKSVSLLRYDEENNKL---------ILVARDYQ---------PRWVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp T--TEEEEEESSSSEEEEEEETTTE-E---------EEEEEESS----------BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred c--cEEEEEEcccCEEEEEEEccCCEE---------EEEEecCC---------CccEEEEEEecCCcEEEEEcCCCeEEE
Confidence 2 488888888888877655422111 11111111 112333334333346888999999998
Q ss_pred EECCC-------c--ceEEEeccCCCCCCcCeE---EEcC--CC------CEEEEEeCCCcEEEEE
Q 001248 601 WDMDS-------V--QLLTSIDADGGLPASPRI---RFNK--DG------CLLAVSTNDNGIKILA 646 (1114)
Q Consensus 601 wd~~~-------~--~~~~~~~~~~~~~~v~~~---~~s~--d~------~~l~~~~~dg~i~iwd 646 (1114)
+.... + +.......+-+ ..|+++ ++.| .+ ..++.++.+|.|...-
T Consensus 199 l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 199 LRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred EEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 87652 2 22222222222 245555 4444 12 2478888999988543
No 386
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.86 E-value=0.27 Score=52.81 Aligned_cols=222 Identities=13% Similarity=0.136 Sum_probs=124.6
Q ss_pred eCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee---------
Q 001248 828 KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--------- 898 (1114)
Q Consensus 828 ~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l--------- 898 (1114)
..++.|+.|.++.+.+++........... +...|..+...| +-+.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 46778888884449999983322222222 223499999998 555555443 599999998764333211
Q ss_pred -----cccccCeeEEE--EcCCC-CEEEEEeCCCcEEEEeCCCCccc---cccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 899 -----KGHSKRITGLA--FSHAL-NVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 899 -----~~h~~~V~~l~--~s~d~-~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
......+...+ -...+ ..|+.+ ..++|.+|........ ...-+... ..+..++|. +..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~--~~~i 151 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFL--GNKI 151 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEe--CCEE
Confidence 11222344444 11233 344444 4558999988763211 11111111 367888888 6677
Q ss_pred EEEeCCeEEEEEcCCCceeeeeecCCC----------CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeE--EeCC
Q 001248 968 LVVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RINP 1035 (1114)
Q Consensus 968 ~~~~d~~i~iwd~~~~~~~~~~~~~~h----------~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~--~~~~ 1035 (1114)
+++..+...+.|+.++.....+..... ..++..+.. +++.+|++- |..-.+.|. .|+... .+.
T Consensus 152 ~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~- 226 (275)
T PF00780_consen 152 CVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ- 226 (275)
T ss_pred EEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEE-
Confidence 777788899999997766544432211 123444444 345676643 333333443 444332 222
Q ss_pred CcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1036 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1036 ~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
-. ..|..+++.. .+|+..+. +.|.||++.+++
T Consensus 227 ---W~-------~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 227 ---WS-------SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred ---cC-------CchhEEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence 00 2344677753 46666554 559999999998
No 387
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.81 E-value=0.43 Score=53.04 Aligned_cols=78 Identities=9% Similarity=-0.092 Sum_probs=54.1
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEec----CCC-----------
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH----PQE----------- 1059 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~d----------- 1059 (1114)
...+.+++.+|++++.|+...=|+|.++|+.++..++.++ |..+. .+.|. ..+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK-------GYRdA-----qc~wi~~~~~~~~~~~~~~~~~~ 374 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK-------GYRDA-----QCGWIEVPEEGDRDRSNSNSPKS 374 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc-------cCccc-----eEEEEEeecccccccccccccCC
Confidence 4568899999999988888777999999999998887766 21111 11111 000
Q ss_pred ----C-CeEEEEeCCCcEEEEeccCCCCcc
Q 001248 1060 ----P-NEFALGLSDGGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1060 ----~-~~l~s~~~Dg~v~vW~i~~~~~~~ 1084 (1114)
. -+++-+-.-|.|.||.+..|....
T Consensus 375 ~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 375 SSRFALFLVIYAPRRGILEVWSMRQGPRVA 404 (415)
T ss_pred CCcceEEEEEEeccCCeEEEEecCCCCEEE
Confidence 0 124456678999999999988443
No 388
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.74 E-value=0.074 Score=46.04 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=42.2
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEE
Q 001248 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd 646 (1114)
+.|++|++|..|++|+-. +.+..+... ..+.+++-... ..++.+..+|+|-+|+
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~---~~v~~L~~~~~-~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITET---DKVTSLCSLGG-GRFAYALANGTVGVYD 69 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEecc---cceEEEEEcCC-CEEEEEecCCEEEEEe
Confidence 679999999999999854 566666543 34777777766 5688899999999996
No 389
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.68 E-value=0.99 Score=49.60 Aligned_cols=111 Identities=21% Similarity=0.272 Sum_probs=58.7
Q ss_pred CceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC----CCeE
Q 001248 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLF 435 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~l 435 (1114)
..+.|+|.|||+ ++++ ...|.|++++ ..+.... .+ -++ . .+..........++|+|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~--~v--~~~-------~-~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKT--PV--ADL-------P-EVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECE--EE--EE--------T-TTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcc--ee--ccc-------c-cccccccCCcccceeccccCCCCEEE
Confidence 468999999998 4554 6699999999 4444311 00 000 0 134455668899999994 4444
Q ss_pred EEEeCC--------CeEEEEEccCC-cee---eeeE-eec---cccCCeeEEEecCCCCeeEEEEec
Q 001248 436 GVAYSR--------HIVQIYSYHGG-DEV---RQHL-EID---AHVGGVNDIAFSHPNKQLCVITCG 486 (1114)
Q Consensus 436 as~~~d--------g~i~iwd~~~~-~~~---~~~~-~l~---~h~~~V~~v~~s~d~~~~~l~s~~ 486 (1114)
++.+.. ..|.-|....+ ..+ ..+. .+. .....-..|+|.|||. |++.+|+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~ 133 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD 133 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence 443321 23555555544 111 1111 111 1233456799999995 3555554
No 390
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.064 Score=63.75 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=69.8
Q ss_pred EEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCC
Q 001248 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG 452 (1114)
Q Consensus 373 ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~ 452 (1114)
.++.|+..|.|-..|+.+.-... .| -..-.++|++++|+.||++++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 48889999999988887531100 00 1123469999999999999999999999999999998
Q ss_pred ceeeeeEeeccccCC---eeEEEecCCCCeeEEEEecCCCCEEEEeC
Q 001248 453 DEVRQHLEIDAHVGG---VNDIAFSHPNKQLCVITCGDDKTIKVWDA 496 (1114)
Q Consensus 453 ~~~~~~~~l~~h~~~---V~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 496 (1114)
+.++. +..|..+ |..+.+..++. .++++...|. +|.+
T Consensus 163 k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 87763 4444443 44444455555 5788877776 5654
No 391
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.037 Score=60.34 Aligned_cols=144 Identities=10% Similarity=0.107 Sum_probs=99.6
Q ss_pred EEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCE--E-----EEEeCCCcEEEEeCCCCccccccccccCC
Q 001248 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV--L-----VSSGADSQLCVWSSDGWEKQKNRFLQIPT 946 (1114)
Q Consensus 874 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~--l-----~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 946 (1114)
+|..+..-..++-.|++.|+.+..+.-|.+ |+-+.+.|+++. | +.|-.|..|.-||..-.... .+...+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence 445555667899999999999999998877 888889887542 2 23556778999998743321 222222
Q ss_pred CCCC-CCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001248 947 GRTP-TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1114)
Q Consensus 947 ~~~~-~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~ 1024 (1114)
++.- ....-.|.+-..+|..++.+.+|.|++||- .+...++.. ++-..+|..+..+.||++|+..+ +.++.+-++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAl-PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTAL-PGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcc-cccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 2221 112335666666776666689999999998 555544443 26688999999999999988665 667777665
No 392
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=96.55 E-value=2.9 Score=50.42 Aligned_cols=112 Identities=11% Similarity=0.021 Sum_probs=74.0
Q ss_pred EEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEE--EEcCCCeeeEEeC
Q 001248 957 RVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV--FSAANLKLRCRIN 1034 (1114)
Q Consensus 957 ~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~v--wd~~~~~~~~~~~ 1034 (1114)
-.+..|-..++.++....+++||+-+.+..+......-...|+++++ .+..+++|...-.|.. |+-...+++. +.
T Consensus 938 v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~-fa 1014 (1205)
T KOG1898|consen 938 VGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIV-FA 1014 (1205)
T ss_pred ceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEE-Ee
Confidence 35667777788888888999999988887776654333567777776 5667888876655555 4444444443 32
Q ss_pred CCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1035 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1035 ~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
....|.. |. ++.+. |-+.++.++.=|++.+-+++..-
T Consensus 1015 -dD~~pR~-----Vt--~~~~l--D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1015 -DDPVPRH-----VT--ALELL--DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred -CCCccce-----ee--EEEEe--cCCceeeccccCcEEEEECCCcc
Confidence 1222221 33 44444 56789999999999999886644
No 393
>PRK10115 protease 2; Provisional
Probab=96.40 E-value=2.3 Score=51.90 Aligned_cols=196 Identities=10% Similarity=0.034 Sum_probs=100.9
Q ss_pred CCccEEEEeeCCCEEEEEeC--C----eEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC-C-----CcEEE
Q 001248 819 EAVPCFALSKNDSYVMSASG--G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-D-----SSIQI 886 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~d--g----~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~-d-----g~v~i 886 (1114)
-.+..+.+||||++|+.+.| | .|++.|+.++..+...-... -..++|++ |++.|+.... + ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 34567889999999998863 3 48899998876433221111 14699999 6655544432 2 36888
Q ss_pred EEcccc--eEEEeecccccCee-EEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEE
Q 001248 887 YNVRVD--EVKSKLKGHSKRIT-GLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 960 (1114)
Q Consensus 887 wd~~~~--~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~f 960 (1114)
+++.++ +....+........ .+..+.|+++++..+. ++.+.+|+...........+....+ ....+.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~- 276 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD------HEYSLD- 276 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC------CEEEEE-
Confidence 888887 33333433222233 3344558887664433 3568888854311111111111111 112222
Q ss_pred ccCCcEEEEEeC----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001248 961 HQDQIHFLVVHE----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 961 spdg~~l~~~~d----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
+..+.+++.... ..|...++.+......+........|..+.++ .+.++++...+|.-+++-++
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 223333333322 23444454421222233322123468888887 33456667677775555443
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.34 E-value=0.5 Score=49.59 Aligned_cols=149 Identities=17% Similarity=0.107 Sum_probs=89.9
Q ss_pred CccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE-cccceEE-
Q 001248 820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN-VRVDEVK- 895 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd-~~~~~~~- 895 (1114)
.+.+.++++|++.++... ++.-.||-...+.....+. ....++.-.|++ ++.+.+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCccee
Confidence 688899999999888765 5443444333333333322 233788889999 688887777777777774 3333221
Q ss_pred Eeecc--cccCeeEEEEcCCCCEEEEEe---CCCcEEEEeCCCCccccccccccCCC-CCCCCCCceEEEEccCCcEEEE
Q 001248 896 SKLKG--HSKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 896 ~~l~~--h~~~V~~l~~s~d~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
..+.. -...|+++.+||||..+|... .++.|.+=-+..........+..... .......+..+.|.+++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 11211 112899999999999988665 35777777665433221111111100 0011246789999999998887
Q ss_pred E
Q 001248 970 V 970 (1114)
Q Consensus 970 ~ 970 (1114)
+
T Consensus 183 ~ 183 (253)
T PF10647_consen 183 G 183 (253)
T ss_pred e
Confidence 4
No 395
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.31 E-value=0.0099 Score=40.59 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=28.9
Q ss_pred CCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 993 ESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 993 ~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
.|...|.++.|.+++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 6788999999999999999999999999996
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=0.58 Score=47.94 Aligned_cols=170 Identities=7% Similarity=0.048 Sum_probs=112.8
Q ss_pred ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEE
Q 001248 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLA 976 (1114)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~ 976 (1114)
+.|-...|.++.|+|+.+.|++......-.||=...|+.....++.... ....+.+..+|+++++ -.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence 4555566999999999999998888777777766666655544444332 3467888899999888 4788888
Q ss_pred EEEcCCCceeeee-----ec--CCC-CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCC-C--
Q 001248 977 IFETTKLECVKQW-----VP--RES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS-S-- 1045 (1114)
Q Consensus 977 iwd~~~~~~~~~~-----~~--~~h-~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~-~-- 1045 (1114)
++.+.....+..+ .. ..+ +...-.++|+|..+.|+.+-+-.-+.||.+..+.-.-... ....+. .
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----~~~~~~~~~~ 229 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----ASLDPTADRD 229 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc----cccCcccccc
Confidence 8887665332221 11 122 5567889999999999999888777777766333111111 000100 0
Q ss_pred ---CCccceEEEecCCCCCeEEEEeCCCcEEEEeccCC
Q 001248 1046 ---SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1046 ---~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
..++ .+.|.+..+.+||-+.+++.+...+....
T Consensus 230 ~f~~DvS--gl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 230 LFVLDVS--GLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eEeeccc--cceecCCCCcEEEEecCCceEEEEecCCC
Confidence 0133 67788777888888888888887776554
No 397
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.26 E-value=0.87 Score=50.05 Aligned_cols=240 Identities=15% Similarity=0.138 Sum_probs=120.2
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCcc---ccc----cCCCCCCeEEEEEecC---CCcEEEEEeCC--------
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MAT----FMPPPPAATFLAFHPQ---DNNIIAIGMDD-------- 881 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~---~~~----~~~~~~~i~~l~~sp~---d~~~la~g~~d-------- 881 (1114)
..++++|.|||+++++-..|.|++++ ..+.. +.. ..........++|+|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999888876699999999 33332 111 2234456899999992 24444444421
Q ss_pred CcEEEEEcccc-------eEE-Eeecc---cccCeeEEEEcCCCCEEEEEeCCCc-------------EEEEeCCCCccc
Q 001248 882 SSIQIYNVRVD-------EVK-SKLKG---HSKRITGLAFSHALNVLVSSGADSQ-------------LCVWSSDGWEKQ 937 (1114)
Q Consensus 882 g~v~iwd~~~~-------~~~-~~l~~---h~~~V~~l~~s~d~~~l~s~s~D~~-------------v~iwd~~~~~~~ 937 (1114)
..|.-|.+..+ +.+ ..+.. ..-.-..|+|.|||.+.++.+..+. |.-.+.+. ...
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCC
Confidence 23444444332 111 12221 1122356999999987777665432 22222221 000
Q ss_pred ccccc---------ccCCCCCCCCCCceEEEEccC-CcEEEE--EeCCeEEEEEcCCCcee-------------------
Q 001248 938 KNRFL---------QIPTGRTPTAQSDTRVQFHQD-QIHFLV--VHETQLAIFETTKLECV------------------- 986 (1114)
Q Consensus 938 ~~~~~---------~~~~~~~~~~~~i~~v~fspd-g~~l~~--~~d~~i~iwd~~~~~~~------------------- 986 (1114)
..... ....|+ .....++|.|. |.+.++ +.+..=.|..+..+.-.
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CCCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 00000 000011 13468899999 877776 44443333333332110
Q ss_pred --------eeeecCCCCcCeeEEEECC-------CCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccce
Q 001248 987 --------KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1051 (1114)
Q Consensus 987 --------~~~~~~~h~~~v~~l~~s~-------dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1051 (1114)
..+.. .+...++.+.|-. .|.++++.-..+.|....+.++..+.... ..+ . .....++
T Consensus 237 ~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~---~~~~r~~ 309 (331)
T PF07995_consen 237 PSCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL-G---GFGGRPR 309 (331)
T ss_dssp SS-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC-T---TSSS-EE
T ss_pred cCCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc-c---cCCCCce
Confidence 00111 1235666777753 44566655556778888887554332221 111 1 1112466
Q ss_pred EEEecCCCCCeEEEEeCCCcEE
Q 001248 1052 VIAAHPQEPNEFALGLSDGGVH 1073 (1114)
Q Consensus 1052 ~~~~~~~d~~~l~s~~~Dg~v~ 1073 (1114)
.+++.| ||.+.++.+.+|.|+
T Consensus 310 ~v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 310 DVAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEET-TSEEEEEE-TTTTEE
T ss_pred EEEEcC-CCeEEEEECCCCeEe
Confidence 899999 688888888888874
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.043 Score=65.09 Aligned_cols=101 Identities=16% Similarity=0.302 Sum_probs=75.6
Q ss_pred CCCEEEEEe-CCeEEEEEcCCC-ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee
Q 001248 829 NDSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
.+-.++.|+ .|.+-..|+... .....-....++|++++|+. +|.+++.|-.+|.|.+||+..++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 455678887 577888887542 11122223457899999999 999999999999999999999999999888877777
Q ss_pred EEEE---cCCCCEEEEEeCCCcEEEEeCC
Q 001248 907 GLAF---SHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 907 ~l~~---s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
++-+ ..++..+.++..-|. +|++.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 6654 356667888877775 66654
No 399
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.22 E-value=0.83 Score=46.86 Aligned_cols=202 Identities=13% Similarity=0.158 Sum_probs=120.8
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc-cCCCCCCCCCccEEEEee
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~-~~~~~~~~~~v~~v~~s~ 828 (1114)
-...++++.|+|+.+.|++......-.||=- .+|.++.. .+.+ -.....+.+..
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt----------------------~~GdlirtiPL~g---~~DpE~Ieyig 138 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELT----------------------KEGDLIRTIPLTG---FSDPETIEYIG 138 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEe----------------------cCCceEEEecccc---cCChhHeEEec
Confidence 4455999999999999999888766555421 13443332 2222 34466788888
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccc----------cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce---E
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMAT----------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---V 894 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~----------~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~---~ 894 (1114)
+|+++++-- ++.+.++.+.....+.. ....+.....+||+| ..+.|..+-+-.-+.||.+..+. .
T Consensus 139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence 888888776 78888887765432211 111245678899999 55566667677777777765322 1
Q ss_pred EEeecccc-------cCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcE
Q 001248 895 KSKLKGHS-------KRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 966 (1114)
Q Consensus 895 ~~~l~~h~-------~~V~~l~~s~d-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~ 966 (1114)
+.....+. ..|.++.|.+. +.+|+-+.+++.+...|....-........-..+-.........++..++|..
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 11111222 34777888764 56677777788888888776432211122222222222224467888888887
Q ss_pred EEEEeCCeEEE
Q 001248 967 FLVVHETQLAI 977 (1114)
Q Consensus 967 l~~~~d~~i~i 977 (1114)
.+++.-+-.+.
T Consensus 298 YIvSEPnlfy~ 308 (316)
T COG3204 298 YIVSEPNLFYR 308 (316)
T ss_pred EEEecCCccee
Confidence 77764443333
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.20 E-value=0.73 Score=45.21 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=80.8
Q ss_pred cCCeeEEEecCCCCeeEEEEec-CC---------CCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCe
Q 001248 465 VGGVNDIAFSHPNKQLCVITCG-DD---------KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK 534 (1114)
Q Consensus 465 ~~~V~~v~~s~d~~~~~l~s~~-~d---------~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~ 534 (1114)
....+.-..+|+|+ ++ .|. .| |.++.|-. +..+..+...-+--+.++|..+ ...+-++-+.+-.
T Consensus 108 knR~NDgkvdP~Gr--yy-~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YY-GGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYE 181 (310)
T ss_pred hcccccCccCCCCc--ee-eeeeccccccccccccEEEEecc--CCCceeeehhccCCcccccccc-CcEEEEEccCceE
Confidence 34566777889999 32 222 11 23333321 1112222222233345677633 2245566677888
Q ss_pred EEEEEcCCCCCeeeecCCCCeeEEEE-------EecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc
Q 001248 535 IKAWLYDNLGSRVDYEAPGRWCTTMA-------YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607 (1114)
Q Consensus 535 i~~wd~~~~~~~~~~~~~~~~v~~~~-------~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 607 (1114)
|..||.+-...... ....+..+. .-||| ++++.+|++.++.-..++|...|..+|+
T Consensus 182 V~a~dyd~~tG~~s---nr~~i~dlrk~~~~e~~~PDG--------------m~ID~eG~L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLS---NRKVIFDLRKSQPFESLEPDG--------------MTIDTEGNLYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred EeeeecCCCccccc---CcceeEEeccCCCcCCCCCCc--------------ceEccCCcEEEEEecCcEEEEECCCCCc
Confidence 88888543221110 001111111 12333 3456678888888999999999999999
Q ss_pred eEEEeccCCCCCCcCeEEEcCC
Q 001248 608 LLTSIDADGGLPASPRIRFNKD 629 (1114)
Q Consensus 608 ~~~~~~~~~~~~~v~~~~~s~d 629 (1114)
.+..+..+ ...+++++|-..
T Consensus 245 ~L~eiklP--t~qitsccFgGk 264 (310)
T KOG4499|consen 245 ILLEIKLP--TPQITSCCFGGK 264 (310)
T ss_pred EEEEEEcC--CCceEEEEecCC
Confidence 99999877 568999999753
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.19 E-value=3.1 Score=47.05 Aligned_cols=156 Identities=12% Similarity=0.027 Sum_probs=85.8
Q ss_pred CCeeEEEecCCCCeeEEEEec--CCCCEEEEeCCCCcceeEeeccccCEEEEeeccCC--CceEEEEEecCCeEEEEEcC
Q 001248 466 GGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE--NIQFIFSTALDGKIKAWLYD 541 (1114)
Q Consensus 466 ~~V~~v~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~~~d~~i~~wd~~ 541 (1114)
.+|..++|. ||++ +++|.- .+|.+++=| .+.+. .-..|..++|.+.. +...+.+....+.|.+|.+.
T Consensus 20 HPvhGlaWT-DGkq-VvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQ-VVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCE-EEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 478999998 7776 455542 223333222 22233 33468888887652 22357777888999999875
Q ss_pred CCCCee--eecCCCCee-EEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc--eEEEeccCC
Q 001248 542 NLGSRV--DYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSIDADG 616 (1114)
Q Consensus 542 ~~~~~~--~~~~~~~~v-~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~ 616 (1114)
...... .+....-.+ ..+-.-|.| +.|+|....|++-.....-.+++..... ....++..
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQG--------------CVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~- 155 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQG--------------CVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTS- 155 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCc--------------ccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCC-
Confidence 321111 000000000 011112222 4578887777776554444455554333 33334333
Q ss_pred CCCCcCeEEEcCCCCEEEEEeCC-CcEEEEEc
Q 001248 617 GLPASPRIRFNKDGCLLAVSTND-NGIKILAT 647 (1114)
Q Consensus 617 ~~~~v~~~~~s~d~~~l~~~~~d-g~i~iwd~ 647 (1114)
+.|.|.+|.+||+.|+++-.. =.-++||-
T Consensus 156 --G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 156 --GLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred --ceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 469999999999988876543 34567774
No 402
>PHA02713 hypothetical protein; Provisional
Probab=96.16 E-value=0.41 Score=56.74 Aligned_cols=228 Identities=12% Similarity=0.065 Sum_probs=114.8
Q ss_pred eEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCC------CcEEEEEcccce--EEEeecccccCeeEEE
Q 001248 840 KISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDE--VKSKLKGHSKRITGLA 909 (1114)
Q Consensus 840 ~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~d------g~v~iwd~~~~~--~~~~l~~h~~~V~~l~ 909 (1114)
.+..||..+.+.. ..+..... -.+++. - ++.+.++|+.+ ..+..||..+++ .+..+.........++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence 4666777654322 22221111 122333 2 67888888854 347888887653 2222221112222222
Q ss_pred EcCCCCEEEEEeCCC-----cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe-C-----------
Q 001248 910 FSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-E----------- 972 (1114)
Q Consensus 910 ~s~d~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~-d----------- 972 (1114)
-+|+..+.||.++ ++..||..+++ +..+........ . .+ +..-+|+..+.|+ +
T Consensus 350 --~~g~IYviGG~~~~~~~~sve~Ydp~~~~---W~~~~~mp~~r~---~-~~-~~~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 350 --IDDTIYAIGGQNGTNVERTIECYTMGDDK---WKMLPDMPIALS---S-YG-MCVLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred --ECCEEEEECCcCCCCCCceEEEEECCCCe---EEECCCCCcccc---c-cc-EEEECCEEEEEeCCCccccccccccc
Confidence 3678888888764 47889887642 222222111110 1 11 1223566666642 2
Q ss_pred ------------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC------CeEEEEEcCC-CeeeEEe
Q 001248 973 ------------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------ATVCVFSAAN-LKLRCRI 1033 (1114)
Q Consensus 973 ------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D------g~I~vwd~~~-~~~~~~~ 1033 (1114)
..+..||..+.+-...-... ......-+..-+|+..+.|+.+ ..|..||..+ .+-...
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~- 496 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI- 496 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc-
Confidence 24777887766543221110 1111111223356666667654 2467888887 443211
Q ss_pred CCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCC--cEEEEeccCCCCcccCCCCCCCCCC
Q 001248 1034 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG--GVHVFEPLESEGKWGVPPPVDNGST 1095 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg--~v~vW~i~~~~~~~~~~~~~~~~~~ 1095 (1114)
. .++.. .....++.. ++.+.++|+.|| ++..+|+.+.+ |..-.|....++
T Consensus 497 ~---~m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~~~~~~~ 548 (557)
T PHA02713 497 T---TTESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICHQHSNSY 548 (557)
T ss_pred c---ccCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhhhcCCce
Confidence 1 12211 111122222 578999999998 78888888866 877776554443
No 403
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.11 E-value=2.5 Score=45.14 Aligned_cols=158 Identities=11% Similarity=0.088 Sum_probs=80.1
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC-CCCc
Q 001248 857 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS-DGWE 935 (1114)
Q Consensus 857 ~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~-~~~~ 935 (1114)
.....+..+..++ ||++++++.......-||.-...=...-+.-+.+|.++.|+|++.+.+.+ ..|.|+.=+. ...+
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3446788888888 89999888655555577754211112223346789999999998776644 7888887761 2211
Q ss_pred cccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeee-cCCCCcCeeEEEECCCCCEEEEEE
Q 001248 936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~s 1014 (1114)
.-......... ..-.+..++|.+++...|++..|.+.. ....|+.=..-. ...-...++.+.|.++.+-++.|
T Consensus 220 ~w~~~~~~~~~----~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 220 TWSEPIIPIKT----NGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred ccccccCCccc----CceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Confidence 10010111111 112478899999999999888885543 344444322211 11225568899998665555544
Q ss_pred cCCeEEEE
Q 001248 1015 LDATVCVF 1022 (1114)
Q Consensus 1015 ~Dg~I~vw 1022 (1114)
.+|.+--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 68877655
No 404
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.11 E-value=0.022 Score=55.49 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=74.0
Q ss_pred CCEEEEEe-CCeEEEEEcCCC-ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccc-cCee
Q 001248 830 DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRIT 906 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~ 906 (1114)
+..+++|. +|.|.+|+..-. .....+......|.++.-.-+++.+..++..||.||.|+..-++.+...-.|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34566666 999999987632 22222222333444443333356689999999999999999999888888887 6677
Q ss_pred EEEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 001248 907 GLAFSHALNVLVSS--GADSQLCVWSSDG 933 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~--s~D~~v~iwd~~~ 933 (1114)
.+..+..++.++++ |.|..++.|+++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 77777777888887 8888888888876
No 405
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.05 E-value=0.26 Score=42.78 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=64.1
Q ss_pred ceEEEEc---CCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 361 PMSMDFH---PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 361 v~~v~~s---pdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
|+++++. .||+.-|++|+.|..|+||+=+. .+.+ ....+.|.+++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 4555554 46666699999999999998542 2221 123457888887766 56888
Q ss_pred EeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEec---CCCCeeEEEEecCCCCEE
Q 001248 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS---HPNKQLCVITCGDDKTIK 492 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s---~d~~~~~l~s~~~d~~i~ 492 (1114)
+..+|+|-+|+-.. +..+ ... ...+.++++. .||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~-RlWR----iKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ-RLWR----IKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcc-eeee----ecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99999999997643 1121 222 2235555543 33433 578887777764
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.04 E-value=1.9 Score=52.63 Aligned_cols=210 Identities=13% Similarity=0.134 Sum_probs=116.5
Q ss_pred cEEEEEeCCCcEEEEEcccceEEEeecccccC--------eeEEEEc----------------CCCCEEEEEeCCCcEEE
Q 001248 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR--------ITGLAFS----------------HALNVLVSSGADSQLCV 928 (1114)
Q Consensus 873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~--------V~~l~~s----------------~d~~~l~s~s~D~~v~i 928 (1114)
..|..++.++.|+-.|..+|+.+.++...... ...+++- .++..++.++.|+.|.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 35666777888999999999888776532211 1223332 13457888889999999
Q ss_pred EeCCCCccccccc------cccCCCCCCCCCCceEEEEcc---CCcEEEEEe----------CCeEEEEEcCCCceeeee
Q 001248 929 WSSDGWEKQKNRF------LQIPTGRTPTAQSDTRVQFHQ---DQIHFLVVH----------ETQLAIFETTKLECVKQW 989 (1114)
Q Consensus 929 wd~~~~~~~~~~~------~~~~~~~~~~~~~i~~v~fsp---dg~~l~~~~----------d~~i~iwd~~~~~~~~~~ 989 (1114)
.|.++++.....- +....+... ..-..+.-+| ++..++.+. +|.|+-+|.++|+.+-.+
T Consensus 275 LDA~TGk~~W~fg~~G~vdl~~~~g~~~--~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 275 LDADTGKLCEDFGNNGTVDLTAGMGTTP--PGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EECCCCCEEEEecCCCceeeecccCcCC--CcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9988876542100 000000000 0000111112 344333321 578999999999988776
Q ss_pred ecCCC---------------CcCe-eEEEECCCCCEEEEEE------------------cCCeEEEEEcCCCeeeEEeCC
Q 001248 990 VPRES---------------SAPI-THATFSCDSQLVYACF------------------LDATVCVFSAANLKLRCRINP 1035 (1114)
Q Consensus 990 ~~~~h---------------~~~v-~~l~~s~dg~~l~s~s------------------~Dg~I~vwd~~~~~~~~~~~~ 1035 (1114)
..... ...+ ..+++.++..+++.+. ..++|.-.|.+||+..-.++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 53100 0111 3345555555544322 134677789999998876652
Q ss_pred -CcccCCCCCCCCccceEEEecCCCCC---eEEEEeCCCcEEEEeccCCCCcccC
Q 001248 1036 -SAYLPAGVSSSNVHPLVIAAHPQEPN---EFALGLSDGGVHVFEPLESEGKWGV 1086 (1114)
Q Consensus 1036 -~~~~~~~~~~~~v~~~~~~~~~~d~~---~l~s~~~Dg~v~vW~i~~~~~~~~~ 1086 (1114)
++..-+- +..-.++-+.....+++ .++.++.+|.+++.|-.+|+..|..
T Consensus 433 ~~hD~WD~--D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 433 VHHDLWDM--DVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cCCccccc--cccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 1111100 11111222333221453 7999999999999999999977764
No 407
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.95 E-value=0.9 Score=53.79 Aligned_cols=234 Identities=9% Similarity=0.085 Sum_probs=128.2
Q ss_pred eCCCEEEEEe-C------CeEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeCC-C-----cEEEEEcccc
Q 001248 828 KNDSYVMSAS-G------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-S-----SIQIYNVRVD 892 (1114)
Q Consensus 828 ~d~~~l~~~~-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~d-g-----~v~iwd~~~~ 892 (1114)
..+..+++|+ + ..+..||..++.... .+. ....-.++++. ++.+.++|+.| | .+..||..++
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 3455666665 4 358888888764322 222 22234455555 57899999999 3 6778888765
Q ss_pred e--EEEeecccccCeeEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCc
Q 001248 893 E--VKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 965 (1114)
Q Consensus 893 ~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~ 965 (1114)
+ .+..+...........+ +|.+.|+||.||. +..||..+.+ +......... .-..-...-+|+
T Consensus 360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~---W~~va~m~~~-----r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK---WTPVAPMLTR-----RSGHGVAVLGGK 429 (571)
T ss_pred ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc---ccccCCCCcc-----eeeeEEEEECCE
Confidence 4 33333333333322233 6888999999964 6677776633 2222211110 011222334566
Q ss_pred EEEE-EeC------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCCeeeEEe
Q 001248 966 HFLV-VHE------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 966 ~l~~-~~d------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg-----~I~vwd~~~~~~~~~~ 1033 (1114)
..++ |.+ ..+..||..+.+......... ...-..++ .-++...+.|+.|+ +|..||..+.+-...-
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCceeecCCccc-ccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 6666 323 358889988776543322211 11111122 33677778888776 3777888777655331
Q ss_pred CCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCC-----cEEEEeccCCCCcccCCCC
Q 001248 1034 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVPPP 1089 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg-----~v~vW~i~~~~~~~~~~~~ 1089 (1114)
. +... .....++-. ++.+.++|+.|| +|..||..+.+ |....+
T Consensus 508 ~----m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 508 P----MTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred c----Cccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 1 1111 111122222 577888898887 77788877766 555444
No 408
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.93 E-value=1.7 Score=44.66 Aligned_cols=185 Identities=8% Similarity=0.103 Sum_probs=113.4
Q ss_pred ccEEEEeeCCCEEEEEe-C--CeEEEEEcCCCccccccCCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 821 VPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
...+.|..+|.++-+.+ - ..|+.+|+.+++......-... --..++.. ++++....-.++...+||..+.+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 44677878887777666 4 4699999999987655432221 12334444 45677777789999999999999888
Q ss_pred eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeE
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQL 975 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i 975 (1114)
++.- .+.=++++ .|++.|+.......+.++|.++.+......+. ....+ ...+.-+-+- +|...|=. ....|
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~--~~g~p-v~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT--DNGRP-VSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E--ETTEE----EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE--ECCEE-CCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 8864 34557777 46777777766777999998875543322222 11111 1234555554 56555543 56778
Q ss_pred EEEEcCCCceeeeeecC----------CC---CcCeeEEEECCCCCEEEEEE
Q 001248 976 AIFETTKLECVKQWVPR----------ES---SAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 976 ~iwd~~~~~~~~~~~~~----------~h---~~~v~~l~~s~dg~~l~s~s 1014 (1114)
...|..+|+....+... .+ ..-...||+.|+...|+..+
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88899999887765321 01 34578999988777665554
No 409
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.81 E-value=0.4 Score=53.72 Aligned_cols=160 Identities=13% Similarity=0.156 Sum_probs=91.7
Q ss_pred CCCeEEEEEecCCCcEEEEEe--CCCcEEEEEcccceEEEeecccccCeeEEEEcCC----CCEEEEEeCCCcEEEEeCC
Q 001248 859 PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 859 ~~~i~~l~~sp~d~~~la~g~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~~l~s~s~D~~v~iwd~~ 932 (1114)
-.++..++|.. +.+.+.+.- .+|.+++=| .+.+..| ..|.++.|.|- -..|...-.-..|.||.+.
T Consensus 19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 34688899984 444444332 344444322 1233333 45899999985 3345555667779999987
Q ss_pred CCcccccccc--ccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCE
Q 001248 933 GWEKQKNRFL--QIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1009 (1114)
Q Consensus 933 ~~~~~~~~~~--~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1009 (1114)
.........+ +.-+-..+.+.-...+.|+|....|++ .....-.++++......-.... ...+.|.|.+|..||+.
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQR 169 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCE
Confidence 3322222222 211111111123367899999999998 4444434555543332222222 23778999999999999
Q ss_pred EEEEEc-CCeEEEEEcCCC
Q 001248 1010 VYACFL-DATVCVFSAANL 1027 (1114)
Q Consensus 1010 l~s~s~-Dg~I~vwd~~~~ 1027 (1114)
|+++-. .=.-+|||-...
T Consensus 170 LVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEEeCCeEEEEEecCchh
Confidence 876543 334788986544
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.70 E-value=2.7 Score=46.16 Aligned_cols=221 Identities=13% Similarity=0.094 Sum_probs=90.8
Q ss_pred CCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccc-cccccCCCCCeeEEEEcCCCCeEEEE--eCC----
Q 001248 369 VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQ-AALVKDPGVSVNRVIWSPDGSLFGVA--YSR---- 441 (1114)
Q Consensus 369 dg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~h~~~V~~l~~spdg~~las~--~~d---- 441 (1114)
+.++|++-|-.++.|+|.|+.+.-..- .-.|+.+-. .... .-+-..| .+.|+ |+|+.++++ ..+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P-~l~KvIe~~---ev~~k~g~s~PH--T~Hcl---p~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP-RLHKVIEPE---EVFEKTGLSRPH--TVHCL---PDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS--EEEEEE-HH---HHHHHH-EEEEE--EEEE----SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC-ceEeeeCHH---HHHhhcCCCCCc--eeeec---CCccEEEEeccCCCCCCC
Confidence 567666666688999999998532111 011111100 0000 0011122 34444 689888885 222
Q ss_pred CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEec--------------------CCCCEEEEeCCCCcc
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG--------------------DDKTIKVWDATNGAK 501 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~--------------------~d~~i~iwd~~~~~~ 501 (1114)
|-+.+.|-++.+.......-.+...--+.+-|.|..+ +++|.. .-.++.+||+.+.+.
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 4577888776554432211111122345667777666 566643 135799999999999
Q ss_pred eeEeeccc--cCEEEEeeccCCCceEEEEEe-cCCeEEEEEc-CCCCCeeeecCCCCeeEEEEEec-CCC---eEEee--
Q 001248 502 QYIFEGHE--APVYSVCPHHKENIQFIFSTA-LDGKIKAWLY-DNLGSRVDYEAPGRWCTTMAYSA-DGT---RTYQG-- 571 (1114)
Q Consensus 502 ~~~~~~h~--~~v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~-~~~~~~~~~~~~~~~v~~~~~s~-~g~---~~~~~-- 571 (1114)
++++.--. .-...+.|..+++..+-++++ ...+|..|-- +.++-... .|..+---+ ++- .++.+
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~------kVi~ip~~~v~~~~lp~ml~~~~ 308 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE------KVIDIPAKKVEGWILPEMLKPFG 308 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE------EEEEE--EE--SS---GGGGGG-
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee------EEEECCCcccCcccccccccccc
Confidence 99886432 234566676666655544443 3445544432 21110000 011110000 000 00000
Q ss_pred ecccceeEEEecCCCCEEEEEe-CCCeEEEEECCCc
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSV 606 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 606 (1114)
....-++-+.+|.|+++|...+ .+|.|+.||+...
T Consensus 309 ~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 309 AVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 0012345566777777777766 7999999998763
No 411
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.61 E-value=0.68 Score=48.58 Aligned_cols=148 Identities=16% Similarity=0.052 Sum_probs=88.1
Q ss_pred CeEEEEEecCCCcEEEEEe---CCCcEEEEEcccceEEEe-ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe-CCCCc
Q 001248 861 AATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWS-SDGWE 935 (1114)
Q Consensus 861 ~i~~l~~sp~d~~~la~g~---~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd-~~~~~ 935 (1114)
.+.+.++++ +++.+|... ....++++.. +..... +.+ ..++.-.|++++...+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999999 777666554 3335555543 332222 233 3688889999988877777777777774 22222
Q ss_pred cccccccccCCCCCCCCCCceEEEEccCCcEEEEE----eCCeEEEEEcC---CC--cee-eeeec-CCCCcCeeEEEEC
Q 001248 936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETT---KL--ECV-KQWVP-RESSAPITHATFS 1004 (1114)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~----~d~~i~iwd~~---~~--~~~-~~~~~-~~h~~~v~~l~~s 1004 (1114)
... ..+...... ..|..+.+||||..+|.. .+++|.+--+. .+ ..+ ..... ......+++++|.
T Consensus 100 ~~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GEP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred cee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 211 111111110 168999999999999883 25677766433 22 011 00111 1225689999999
Q ss_pred CCCCEEEEEEcCCe
Q 001248 1005 CDSQLVYACFLDAT 1018 (1114)
Q Consensus 1005 ~dg~~l~s~s~Dg~ 1018 (1114)
+++.+++.+...+.
T Consensus 175 ~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 175 DDSTLVVLGRSAGG 188 (253)
T ss_pred CCCEEEEEeCCCCC
Confidence 99998776655443
No 412
>PHA02713 hypothetical protein; Provisional
Probab=95.56 E-value=0.63 Score=55.20 Aligned_cols=188 Identities=10% Similarity=0.068 Sum_probs=96.6
Q ss_pred eCCCEEEEEe-C------CeEEEEEcCCCcc--ccccCCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEcccc-
Q 001248 828 KNDSYVMSAS-G------GKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD- 892 (1114)
Q Consensus 828 ~d~~~l~~~~-d------g~i~iwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg-----~v~iwd~~~~- 892 (1114)
-++...+.|+ + ..+..||..+..- +..+....... +++. - ++++.+.|+.++ .+..||..+.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 4667777766 3 2477888776532 22222111112 2222 2 688889998765 4888998764
Q ss_pred -eEEEeecccccCeeEEEEcCCCCEEEEEeCCC-----------------------cEEEEeCCCCccccccccccCCCC
Q 001248 893 -EVKSKLKGHSKRITGLAFSHALNVLVSSGADS-----------------------QLCVWSSDGWEKQKNRFLQIPTGR 948 (1114)
Q Consensus 893 -~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~-----------------------~v~iwd~~~~~~~~~~~~~~~~~~ 948 (1114)
..+..+.........+++ +|++.+.||.++ ++..||..+.+ +..+......
T Consensus 379 W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~---W~~v~~m~~~ 453 (557)
T PHA02713 379 WKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI---WETLPNFWTG 453 (557)
T ss_pred EEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe---EeecCCCCcc
Confidence 333333322222222333 678888888653 36677776632 2222211111
Q ss_pred CCCCCCceEEEEccCCcEEEEE-eC------CeEEEEEcCC-CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC--e
Q 001248 949 TPTAQSDTRVQFHQDQIHFLVV-HE------TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--T 1018 (1114)
Q Consensus 949 ~~~~~~i~~v~fspdg~~l~~~-~d------~~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg--~ 1018 (1114)
.....+..-+|+..++| .+ ..+..||..+ .+-...............++ -+|+..++|+.|| .
T Consensus 454 -----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~ 526 (557)
T PHA02713 454 -----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYML 526 (557)
T ss_pred -----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceee
Confidence 01111223345555554 22 2467899887 44332222111111222222 2788888899888 6
Q ss_pred EEEEEcCCCeee
Q 001248 1019 VCVFSAANLKLR 1030 (1114)
Q Consensus 1019 I~vwd~~~~~~~ 1030 (1114)
+..||..+.+-.
T Consensus 527 ~e~yd~~~~~W~ 538 (557)
T PHA02713 527 QDTFNVYTYEWN 538 (557)
T ss_pred hhhcCccccccc
Confidence 777777776543
No 413
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.44 E-value=0.051 Score=53.09 Aligned_cols=103 Identities=13% Similarity=0.156 Sum_probs=62.3
Q ss_pred EEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCc
Q 001248 374 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 453 (1114)
Q Consensus 374 l~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~ 453 (1114)
+++|+.+|.|.+|++..-.... ..+..+-..-..-+.--.++.+..+++.||.|+.|++.-++
T Consensus 73 ~~vG~~dg~v~~~n~n~~g~~~-----------------d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 73 LMVGTSDGAVYVFNWNLEGAHS-----------------DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred EEeecccceEEEecCCccchHH-----------------HhhhcccccceeccccccccceeEEeccCCceeeeccccCc
Confidence 8889999999999987211110 00111112122223334466788899999999999999877
Q ss_pred eeeeeEeecccc-CCeeEEEecCCCCeeEEEEe--cCCCCEEEEeCCC
Q 001248 454 EVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITC--GDDKTIKVWDATN 498 (1114)
Q Consensus 454 ~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~--~~d~~i~iwd~~~ 498 (1114)
.+. ....|. .++.....+..++ .++.+ |.|..++.|++..
T Consensus 136 ~~g---~~g~h~~~~~e~~ivv~sd~--~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 136 VLG---YVGQHNFESGEELIVVGSDE--FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eee---eeccccCCCcceeEEecCCc--eEEeeccccchhhhhcchhh
Confidence 665 344565 4555555555555 34444 6666666666553
No 414
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.30 E-value=0.061 Score=38.70 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=28.4
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEcc
Q 001248 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH 450 (1114)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~ 450 (1114)
...|.+++|+|...+||.++.+|.|.|+.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3479999999999999999999999999983
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.12 E-value=7.1 Score=47.33 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=60.7
Q ss_pred CCCCccEEEEeeCCCEEEEEeCCeEEEEEcCC-CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
..-.|..+.++++|++++..+...|.|..+.. ...-..+.+....|.|=.+.- +..++.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~------------------- 142 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT------------------- 142 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence 44578899999999999999877777776642 111122333333344333322 222221
Q ss_pred EeecccccCeeEEEEcCC---CCEEEEEeCCCcEEEEeCCCC
Q 001248 896 SKLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGW 934 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d---~~~l~s~s~D~~v~iwd~~~~ 934 (1114)
..+...|..+.|+|. +..|+.-..|+++++||+...
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 123456778889886 478888899999999999753
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.09 E-value=0.086 Score=37.95 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=29.8
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
...|..++|+|...+||.++.||.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 567999999999999999999999999998 444
No 417
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.98 E-value=12 Score=45.50 Aligned_cols=105 Identities=11% Similarity=0.123 Sum_probs=68.4
Q ss_pred EEEeeCCCEEEEEeCCeEEEEEcCCCcccccc--CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc--ccceEEEeec
Q 001248 824 FALSKNDSYVMSASGGKISLFNMMTFKTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV--RVDEVKSKLK 899 (1114)
Q Consensus 824 v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~--~~~~~~~~l~ 899 (1114)
.|+.|...++.+|-...+++||+...+.++.. +.....|+.+.+. +..+++|...-.|.++.. ...+++ .+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~-~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLI-VFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEE-EEe
Confidence 35667777888888999999999877766553 3345667888774 567888876666665444 444433 332
Q ss_pred c--cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 900 G--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 900 ~--h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+ -...|+++.+- |-..+|.+..=|.+.+-.+..
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 2 23346666665 455777777777776665543
No 418
>PRK10115 protease 2; Provisional
Probab=94.70 E-value=14 Score=45.10 Aligned_cols=245 Identities=9% Similarity=0.033 Sum_probs=113.8
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
-.+..+.++|||++|+.+...+--.-++ +.+.++.+|..+...+.+ .-..++|++|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~-----------------l~v~d~~tg~~l~~~i~~-----~~~~~~w~~D~~ 184 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYG-----------------IRFRNLETGNWYPELLDN-----VEPSFVWANDSW 184 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEE-----------------EEEEECCCCCCCCccccC-----cceEEEEeeCCC
Confidence 4567788999999877654432111111 123344455433222221 114589999999
Q ss_pred EEEEEe-C------CeEEEEEcCCC--ccccccCCCCCCeE-EEEEecCCCcEEEEEeC---CCcEEEEEcc--cceEEE
Q 001248 832 YVMSAS-G------GKISLFNMMTF--KTMATFMPPPPAAT-FLAFHPQDNNIIAIGMD---DSSIQIYNVR--VDEVKS 896 (1114)
Q Consensus 832 ~l~~~~-d------g~i~iwd~~~~--~~~~~~~~~~~~i~-~l~~sp~d~~~la~g~~---dg~v~iwd~~--~~~~~~ 896 (1114)
.|+... + ..|..+++.++ +....+........ .+..+. ++++++..+. ++.+.+|+.. +++...
T Consensus 185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~ 263 (686)
T PRK10115 185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTT-SKHYVVIHLASATTSEVLLLDAELADAEPFV 263 (686)
T ss_pred EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcC-CCCEEEEEEECCccccEEEEECcCCCCCceE
Confidence 777664 2 25888888877 33333433333333 233333 6666555443 3578888842 333222
Q ss_pred eecccccCeeEEEEcCCCCEEEEEeCC-CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE--EeCC
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHET 973 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~--~~d~ 973 (1114)
.+..-.+....+. +..+.+++....+ ...+|..+.-........+..... ...+..+.++ +++|+. -.++
T Consensus 264 ~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~----~~~i~~~~~~--~~~l~~~~~~~g 336 (686)
T PRK10115 264 FLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRE----NIMLEGFTLF--TDWLVVEERQRG 336 (686)
T ss_pred EEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCC----CCEEEEEEEE--CCEEEEEEEeCC
Confidence 2221122222332 2233333333222 233344332211111122211111 1246677776 334444 3455
Q ss_pred e--EEEEEcCCCceeeeeecCCCCcCeeEEEEC--CCCC-EEEEEEc---CCeEEEEEcCCCe
Q 001248 974 Q--LAIFETTKLECVKQWVPRESSAPITHATFS--CDSQ-LVYACFL---DATVCVFSAANLK 1028 (1114)
Q Consensus 974 ~--i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~-~l~s~s~---Dg~I~vwd~~~~~ 1028 (1114)
. +.+++..++ .+..+.... ...+..+.++ +++. ++++.+. -+.++.+|..+++
T Consensus 337 ~~~l~~~~~~~~-~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 337 LTSLRQINRKTR-EVIGIAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEEcCCCC-ceEEecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 4 555565433 333332111 1223333444 4444 4444443 3679999998875
No 419
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.70 E-value=1.5 Score=51.86 Aligned_cols=192 Identities=9% Similarity=0.056 Sum_probs=100.9
Q ss_pred EEEEeeCCCEEEEEe-C------CeEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEE
Q 001248 823 CFALSKNDSYVMSAS-G------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYN 888 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~dg-----~v~iwd 888 (1114)
++++ -++...++|+ | .++..||..+.+-.. .+...........+ +|.+.|+|+.|| +|..||
T Consensus 327 ~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 327 GVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred cEEE-ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE---CCEEEEEeccccccccccEEEec
Confidence 3444 3556666766 6 347788887655332 22211111222222 789999999997 477788
Q ss_pred cccc--eEEEeecccccCeeEEEEcCCCCEEEEEeCCC------cEEEEeCCCCccccccccccCCCCCCCCCCceEEEE
Q 001248 889 VRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 960 (1114)
Q Consensus 889 ~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~f 960 (1114)
..+. ..+..+.........+.+ +|++.+.||.|+ ++..||..++.=.....+...... ..++
T Consensus 403 p~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-------~g~a- 472 (571)
T KOG4441|consen 403 PVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-------FGVA- 472 (571)
T ss_pred CCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-------ceEE-
Confidence 7764 333333322222333333 688888888664 467888777543222222222211 2233
Q ss_pred ccCCcEEEE-EeCC-----eEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCCee
Q 001248 961 HQDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKL 1029 (1114)
Q Consensus 961 spdg~~l~~-~~d~-----~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg-----~I~vwd~~~~~~ 1029 (1114)
.-++...++ |.|+ ++..||..+.+-...-........+.... -+++..++|+.|| +|..||-.+.+-
T Consensus 473 ~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 473 VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCce
Confidence 334555555 4444 47889988766544322111122222222 2566677787775 466676665543
Q ss_pred e
Q 001248 1030 R 1030 (1114)
Q Consensus 1030 ~ 1030 (1114)
.
T Consensus 551 ~ 551 (571)
T KOG4441|consen 551 T 551 (571)
T ss_pred e
Confidence 3
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.61 E-value=7.6 Score=43.54 Aligned_cols=138 Identities=15% Similarity=0.131 Sum_probs=78.8
Q ss_pred CCccEEEEeeCCCEEEEEe------------CC-eEEEEEcCC--Ccc--ccccCCCCCCeEEEEEecCCCcEEEEEeCC
Q 001248 819 EAVPCFALSKNDSYVMSAS------------GG-KISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD 881 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~------------dg-~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~la~g~~d 881 (1114)
.....+++.++|+++++-. .+ .|.+++-.+ ++. ...+.......+.+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4467899999999887742 23 777776543 222 223333334568899988 77 444 3444
Q ss_pred CcEEEE-Eccc-------ce-EEEeecc----cccCeeEEEEcCCCCEEEEEeCC-------------------CcEEEE
Q 001248 882 SSIQIY-NVRV-------DE-VKSKLKG----HSKRITGLAFSHALNVLVSSGAD-------------------SQLCVW 929 (1114)
Q Consensus 882 g~v~iw-d~~~-------~~-~~~~l~~----h~~~V~~l~~s~d~~~l~s~s~D-------------------~~v~iw 929 (1114)
.|..| |... .+ ++..+.. +......++|.|||.+.++.+.. +.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 45444 4421 11 1222322 23447789999999887765521 334444
Q ss_pred eCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 930 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 930 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
+.++++. .....+. .....++|+++|+++++
T Consensus 170 ~pdg~~~-----e~~a~G~----rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 170 NPDGGKL-----RVVAHGF----QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred ecCCCeE-----EEEecCc----CCCccceECCCCCEEEE
Confidence 4544321 1112222 23578999999999877
No 421
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.36 E-value=5.4 Score=41.12 Aligned_cols=191 Identities=10% Similarity=0.090 Sum_probs=103.0
Q ss_pred cccceEEEEEccCcceeeecccCc--eEEEEeecccccCCCCCccccccccccCCCCCccccc-cCCCCCCCCCccEEEE
Q 001248 750 RATKISRLIFTNSGNAILALASNA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFAL 826 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~-~~~~~~~~~~v~~v~~ 826 (1114)
...-...+.|..+|..+-+.+.-| .|+.++ +.+|+.... .+. ...--..+++
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d----------------------~~tg~~~~~~~l~---~~~FgEGit~ 97 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVD----------------------LETGKVLQSVPLP---PRYFGEGITI 97 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEE----------------------TTTSSEEEEEE-T---TT--EEEEEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEE----------------------CCCCcEEEEEECC---ccccceeEEE
Confidence 344567888888888777777765 455444 345543321 111 2223334555
Q ss_pred eeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccc-----
Q 001248 827 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH----- 901 (1114)
Q Consensus 827 s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h----- 901 (1114)
..|.-+..+--++...+||..+.+.+.++.-. .+=..++ . |++.|+.......++++|..+.+....+.-.
T Consensus 98 ~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 98 LGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred ECCEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEE--c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEE
Confidence 54433444444899999999998888777532 3445555 3 5666766666778999998877666555322
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccc-------cCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ-------IPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
-..++-+.|- +|...|=.=....|..-|..+++.....-+. ......+...-...+|+.|.+..+.+.
T Consensus 174 v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 174 VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp ---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 1235556665 5655555444555666666666543321110 011111123456899999877666653
No 422
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.30 E-value=4.5 Score=41.09 Aligned_cols=198 Identities=13% Similarity=0.139 Sum_probs=127.2
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccc
Q 001248 862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF 941 (1114)
Q Consensus 862 i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 941 (1114)
-..++-+| ||..-.++...|.|--.|..+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.+...
T Consensus 64 p~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~--- 138 (353)
T COG4257 64 PFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR--- 138 (353)
T ss_pred ccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE---
Confidence 45677778 88888888888888888999998776665655666778888888777664433 34444554433322
Q ss_pred cccCCCCCCCCCCceEEEEccCCcEEEEEeCC----------eEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEE
Q 001248 942 LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY 1011 (1114)
Q Consensus 942 ~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~----------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1011 (1114)
......+. ........|.++|++-.++..| .|++|+.. .....+.|+..|||..-+
T Consensus 139 f~lp~~~a--~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 139 FPLPLEHA--DANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred eecccccC--CCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEEE
Confidence 12222222 2467889999999998886433 34444432 244567889999999888
Q ss_pred EEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC-CcccCC
Q 001248 1012 ACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVP 1087 (1114)
Q Consensus 1012 s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~-~~~~~~ 1087 (1114)
+.-.+..|-.-|-.++.. .++.....+..+ .. .+--+| -+..-+|....+.++.+|.++.. ..|.+|
T Consensus 205 aslagnaiaridp~~~~a-ev~p~P~~~~~g-----sR--riwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLP 272 (353)
T COG4257 205 ASLAGNAIARIDPFAGHA-EVVPQPNALKAG-----SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLP 272 (353)
T ss_pred EeccccceEEcccccCCc-ceecCCCccccc-----cc--ccccCc-cCcEEEeccCCceeeEeCcccccceeeeCC
Confidence 877777888778777732 233322222222 11 233345 47777887778888888887755 344443
No 423
>PRK13684 Ycf48-like protein; Provisional
Probab=94.18 E-value=11 Score=41.54 Aligned_cols=155 Identities=10% Similarity=0.042 Sum_probs=88.6
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCcEEE-EEcccceEEEe-ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001248 859 PPAATFLAFHPQDNNIIAIGMDDSSIQI-YNVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 936 (1114)
Q Consensus 859 ~~~i~~l~~sp~d~~~la~g~~dg~v~i-wd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~ 936 (1114)
...+..+.+.| ++.++++|. .|.++. +|- .++.-.. -.+-...++++.+.++++.++.+ ..|.+++=..+.++.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999999 777776554 565543 221 1121111 22334678999999998876654 567654322333221
Q ss_pred ccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeec-CCCCcCeeEEEECCCCCEEEEEEc
Q 001248 937 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFL 1015 (1114)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~s~ 1015 (1114)
+......... ....+..+.|.+++..++++.+|.+. .....++.-..... ..-....+.+.|..+++.+++| .
T Consensus 248 --W~~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~ 321 (334)
T PRK13684 248 --WSKPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q 321 (334)
T ss_pred --cccccCCccc--cccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence 1111111010 11246788999999988888887665 34444444333221 1113467788888777776655 6
Q ss_pred CCeEEEEE
Q 001248 1016 DATVCVFS 1023 (1114)
Q Consensus 1016 Dg~I~vwd 1023 (1114)
.|.|..|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 78887776
No 424
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.85 E-value=4.1 Score=44.87 Aligned_cols=190 Identities=15% Similarity=0.163 Sum_probs=89.9
Q ss_pred EEEeeCCCEEEEEe---C----CeEEEEEcCCCccccccCCCC---CCeEEEEEecCCCcEEEEEe--------------
Q 001248 824 FALSKNDSYVMSAS---G----GKISLFNMMTFKTMATFMPPP---PAATFLAFHPQDNNIIAIGM-------------- 879 (1114)
Q Consensus 824 v~~s~d~~~l~~~~---d----g~i~iwd~~~~~~~~~~~~~~---~~i~~l~~sp~d~~~la~g~-------------- 879 (1114)
+-.-|+|+.++++- + |.+.++|-++.+......... .--..+-+.| ..+.+++..
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChh
Confidence 34457888887762 2 558888888777665554322 2234566667 556665543
Q ss_pred ------CCCcEEEEEcccceEEEeecccc--cCeeEEEEcCC--CCE-EEEEeCCCcEEEEeC-CCCccccccccccCCC
Q 001248 880 ------DDSSIQIYNVRVDEVKSKLKGHS--KRITGLAFSHA--LNV-LVSSGADSQLCVWSS-DGWEKQKNRFLQIPTG 947 (1114)
Q Consensus 880 ------~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~s~d--~~~-l~s~s~D~~v~iwd~-~~~~~~~~~~~~~~~~ 947 (1114)
-..++.+||+.+.+.++++.--. .....|.|..+ ..+ ++.+.-..+|..|-- +.++=.....+.+...
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK 293 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence 23479999999999998886432 23456666644 444 333333444444322 3332222222222221
Q ss_pred -------------CCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCc---eeeeeecCCC--------------C
Q 001248 948 -------------RTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE---CVKQWVPRES--------------S 995 (1114)
Q Consensus 948 -------------~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~---~~~~~~~~~h--------------~ 995 (1114)
....+.-|+.+.+|.|.++|.++ .+|.++.||+..-. .+.+....+- .
T Consensus 294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~ 373 (461)
T PF05694_consen 294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR 373 (461)
T ss_dssp E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence 01112467999999999999995 78999999998743 3333332211 2
Q ss_pred cCeeEEEECCCCCEEEEEE
Q 001248 996 APITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 996 ~~v~~l~~s~dg~~l~s~s 1014 (1114)
+....+..|-||+.|+..+
T Consensus 374 GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 374 GGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S----EEE-TTSSEEEEE-
T ss_pred CCCCeEEEccCCeEEEEEe
Confidence 2346788999999988765
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.82 E-value=0.9 Score=53.08 Aligned_cols=118 Identities=10% Similarity=0.121 Sum_probs=75.0
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec-ccccCeeEEEEc--CCCCEEEEEeCCCcEEEEeCCC----
Q 001248 861 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGLAFS--HALNVLVSSGADSQLCVWSSDG---- 933 (1114)
Q Consensus 861 ~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~d~~~l~s~s~D~~v~iwd~~~---- 933 (1114)
.++-+.-|. -++..++-+....+.|||...+.+...-. ...+.|.++.|. |||+.+++.|-.+.|.+|.-..
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344444444 34455554455689999999876443222 356789999985 7899999999999999986421
Q ss_pred CccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEc
Q 001248 934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 980 (1114)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~ 980 (1114)
.....+..+....-...++++|....|.+||.+++ +.+.++.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 12222223333222222336788999999997655 45677888864
No 426
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.81 E-value=9.8 Score=39.70 Aligned_cols=206 Identities=10% Similarity=0.101 Sum_probs=121.3
Q ss_pred ccEEEEeeCCCEEEEEe-CCeEEEEEcC------CC-ccccccCC-----CCCCeEEEEEecCCCc------------EE
Q 001248 821 VPCFALSKNDSYVMSAS-GGKISLFNMM------TF-KTMATFMP-----PPPAATFLAFHPQDNN------------II 875 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~-dg~i~iwd~~------~~-~~~~~~~~-----~~~~i~~l~~sp~d~~------------~l 875 (1114)
...++++|.+.+-++.. -+...+||.. .. ..+-++.. .....+.+.|+. ... .+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence 56799999887766665 6889999986 11 11222331 234577888875 222 25
Q ss_pred EEEeCCCcEEEEEcccceE-----EEeec-ccccCe-eEEEEcCC--CCEEE-EEeCCCcEEEEeCCCCccccc-ccc--
Q 001248 876 AIGMDDSSIQIYNVRVDEV-----KSKLK-GHSKRI-TGLAFSHA--LNVLV-SSGADSQLCVWSSDGWEKQKN-RFL-- 942 (1114)
Q Consensus 876 a~g~~dg~v~iwd~~~~~~-----~~~l~-~h~~~V-~~l~~s~d--~~~l~-s~s~D~~v~iwd~~~~~~~~~-~~~-- 942 (1114)
+.+++||+|.=|...-+.. ...+. ...+.| ..+++... +.+|. +--..++|.|+|-.-...... ...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 6678999999998532221 12222 112333 34565532 44554 445678999998654221100 000
Q ss_pred ccCCCCCCCCCCceEEEEccCCcEEEE-E-------------eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECC---
Q 001248 943 QIPTGRTPTAQSDTRVQFHQDQIHFLV-V-------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSC--- 1005 (1114)
Q Consensus 943 ~~~~~~~~~~~~i~~v~fspdg~~l~~-~-------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~--- 1005 (1114)
.++.+. ....+.-- .+++.++ + .-|.|-+||.. |..++.+...+.-...+.|+..|
T Consensus 184 ~iPagy-----APFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 184 ALPAGY-----APFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCCCCC-----CCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhh
Confidence 001111 01111111 2333333 2 23578999985 77777776666666778888866
Q ss_pred ---CCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 1006 ---DSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 1006 ---dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
.|.+|+--..||+|-.||..+|+.+..+.
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 66777766679999999999999998877
No 427
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.80 E-value=10 Score=45.99 Aligned_cols=69 Identities=22% Similarity=0.337 Sum_probs=40.2
Q ss_pred cCCcEEEEEcCCcceeEEeeeeeeccCC---CCcccccccc-cCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEc
Q 001248 379 NVGDIGLWEVGSRERLVLRNFKVWDLGA---CSMPLQAALV-KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY 449 (1114)
Q Consensus 379 ~dg~v~iwd~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~-~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~ 449 (1114)
.|+.+.+||-..... ...+++.-+-.. ....++.... ..-.-.|..|.+||+|++||..|..| |.|-.+
T Consensus 40 ~d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 40 RDGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eCCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 367888888765443 223443332211 1122332211 22345799999999999999998877 444444
No 428
>PHA03098 kelch-like protein; Provisional
Probab=93.66 E-value=2.9 Score=49.82 Aligned_cols=187 Identities=7% Similarity=-0.015 Sum_probs=91.3
Q ss_pred eCCCEEEEEe-C------CeEEEEEcCCCccccc--cCCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEcccce
Q 001248 828 KNDSYVMSAS-G------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE 893 (1114)
Q Consensus 828 ~d~~~l~~~~-d------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~la~g~~dg-----~v~iwd~~~~~ 893 (1114)
.++..++.|+ + ..+..||..+.+.... +.........+. - ++++++.|+.++ .+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F-NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 4556666665 3 2477888776543221 111111222222 2 678888888663 57788877643
Q ss_pred --EEEeecccccCeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCc
Q 001248 894 --VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 965 (1114)
Q Consensus 894 --~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~ 965 (1114)
....+....... +++ .-++++.+.||.+ ..+..||..+++ +..+....... . ...+...+++
T Consensus 370 W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~r----~-~~~~~~~~~~ 439 (534)
T PHA03098 370 WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK---WSKGSPLPISH----Y-GGCAIYHDGK 439 (534)
T ss_pred eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe---eeecCCCCccc----c-CceEEEECCE
Confidence 222222111111 122 2356777777742 357888887643 22221111110 1 1122334555
Q ss_pred EEEEEe-C--------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCee
Q 001248 966 HFLVVH-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKL 1029 (1114)
Q Consensus 966 ~l~~~~-d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~ 1029 (1114)
..+.|+ + ..+.+||..+.+-...-...........+.+ +++.++.|+.+ ..|.+||..+.+-
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 555542 1 2388899887654332111110111112222 66776777654 4678888777654
No 429
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.63 E-value=12 Score=40.08 Aligned_cols=231 Identities=12% Similarity=0.031 Sum_probs=108.4
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccC---CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceEE
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK 895 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-~~~~ 895 (1114)
...++.|.. ...+++|..+. .+.....++.-..+. .-+.....+.... ++..+++ +..|.|+. ... |+.-
T Consensus 63 ~l~~I~f~~-~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l~-~~~G~iy~--T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDG-NEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAELA-GDRGAIYR--TTDGGKTW 136 (302)
T ss_dssp EEEEEEEET-TEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEEE-ETT--EEE--ESSTTSSE
T ss_pred eEEEEEecC-CceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEEE-cCCCcEEE--eCCCCCCe
Confidence 355677654 34555555554 333333333322221 1122333333333 3434433 44555433 222 2211
Q ss_pred -EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCe
Q 001248 896 -SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ 974 (1114)
Q Consensus 896 -~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~ 974 (1114)
.....-.+.+..+.-++||+++++++.-....-|+-... ......... ...|..+.|+||+.+.+++..+.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r~~-----~~riq~~gf~~~~~lw~~~~Gg~ 208 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNRNS-----SRRIQSMGFSPDGNLWMLARGGQ 208 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE--S-----SS-EEEEEE-TTS-EEEEETTTE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEccCc-----cceehhceecCCCCEEEEeCCcE
Confidence 122344577889999999999888876666667775431 112222211 13689999999999988888888
Q ss_pred EEEEE-cCCCceeee--eecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccce
Q 001248 975 LAIFE-TTKLECVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1051 (1114)
Q Consensus 975 i~iwd-~~~~~~~~~--~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1051 (1114)
|+.=+ ....+.-.. .........+..++|.+++...++|+ .|.+. ...+.|+--.+-+.....+ .+.+
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~-----~n~~-- 279 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVP-----SNLY-- 279 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSS-----S-----
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCC-----CceE--
Confidence 88766 222222111 11111234589999999988777665 55443 4667777655544222222 1244
Q ss_pred EEEecCCCCCeEEEEeCCCcEEEE
Q 001248 1052 VIAAHPQEPNEFALGLSDGGVHVF 1075 (1114)
Q Consensus 1052 ~~~~~~~d~~~l~s~~~Dg~v~vW 1075 (1114)
.+.|.+ ++.-.+.+.+|.|--|
T Consensus 280 ~i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 280 RIVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEEE--TTEEEEE-STTEEEEE
T ss_pred EEEEcC--CCceEEECCCcEEEEe
Confidence 888875 3455555678887655
No 430
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.43 E-value=8.9 Score=38.03 Aligned_cols=207 Identities=13% Similarity=0.128 Sum_probs=110.7
Q ss_pred CCeEEEEEcCCCccccc-cCCCCCCeEEEEEecCC-CcEEEEE-eCCCcEEEEEcc--cceEEEee---cc--cccCeeE
Q 001248 838 GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQD-NNIIAIG-MDDSSIQIYNVR--VDEVKSKL---KG--HSKRITG 907 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d-~~~la~g-~~dg~v~iwd~~--~~~~~~~l---~~--h~~~V~~ 907 (1114)
.+.|.-||....+..+. +.+. ....+.+--.+ .+..+++ +..-.|--||.. .-.+..++ +. ...+.+.
T Consensus 36 ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~ND 113 (310)
T KOG4499|consen 36 AGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLND 113 (310)
T ss_pred cCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhccccc
Confidence 56777788876443322 2222 13333332211 1233333 333334446632 22333332 11 1345566
Q ss_pred EEEcCCCCEEEEEeCC---------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE--EeCCeEE
Q 001248 908 LAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLA 976 (1114)
Q Consensus 908 l~~s~d~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~--~~d~~i~ 976 (1114)
-..+|+|++.+-.-.| |.++.|-....-...+.++ +.-..++|+.|.+.+.. +.+-.|.
T Consensus 114 gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v----------~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 114 GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCV----------GISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred CccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhc----------cCCccccccccCcEEEEEccCceEEe
Confidence 6778999985532222 4455555443111111111 12367889988887776 5666777
Q ss_pred EEE--cCCCceeee---eecCC----CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCC
Q 001248 977 IFE--TTKLECVKQ---WVPRE----SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1047 (1114)
Q Consensus 977 iwd--~~~~~~~~~---~~~~~----h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1114)
-|| ..+|..... +..+. ..-..-.+++..+|.+.+++-..++|.-.|..+|+.+..+. +|..
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik----lPt~----- 254 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK----LPTP----- 254 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE----cCCC-----
Confidence 777 666643211 11111 12234456667788888888888999999999999999988 5532
Q ss_pred ccceEEEecCCCCCeEEEE
Q 001248 1048 VHPLVIAAHPQEPNEFALG 1066 (1114)
Q Consensus 1048 v~~~~~~~~~~d~~~l~s~ 1066 (1114)
...+++|-..+=+++++.
T Consensus 255 -qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 255 -QITSCCFGGKNLDILYVT 272 (310)
T ss_pred -ceEEEEecCCCccEEEEE
Confidence 233888875332445544
No 431
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=0.83 Score=55.11 Aligned_cols=146 Identities=12% Similarity=0.064 Sum_probs=95.6
Q ss_pred CCCccEEEEeeCCCEEEEEe--C-CeEEEEEcCCCcccc-----ccCC------CCCCeEEEEEecCCCcEEEEEeCCCc
Q 001248 818 EEAVPCFALSKNDSYVMSAS--G-GKISLFNMMTFKTMA-----TFMP------PPPAATFLAFHPQDNNIIAIGMDDSS 883 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~--d-g~i~iwd~~~~~~~~-----~~~~------~~~~i~~l~~sp~d~~~la~g~~dg~ 883 (1114)
...+..+...+|+...++.. + ..|..||+.+...-. .+.. ...-..++.|+|.-....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34566677788877666554 3 369999987543221 1111 12345678888844556677888999
Q ss_pred EEEEEcccce-EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc
Q 001248 884 IQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 884 v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp 962 (1114)
|++..+.-.. .+..+ .-...+++++|+|-|+.++.|-..|++.-|...-..+....+.... ....|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~-----e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVE-----ENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcC-----CCcceeEEEEec
Confidence 9998765422 22222 2456689999999999999999999999987665322111111111 125789999998
Q ss_pred CCcEEEE
Q 001248 963 DQIHFLV 969 (1114)
Q Consensus 963 dg~~l~~ 969 (1114)
.-.++++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 8888887
No 432
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.11 E-value=0.097 Score=60.80 Aligned_cols=144 Identities=14% Similarity=0.198 Sum_probs=87.6
Q ss_pred CeEEEEEcC--CCcccccc-----CCCCCCeEEEEE---ecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEE
Q 001248 839 GKISLFNMM--TFKTMATF-----MPPPPAATFLAF---HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL 908 (1114)
Q Consensus 839 g~i~iwd~~--~~~~~~~~-----~~~~~~i~~l~~---sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l 908 (1114)
|.+.||++. .|+....+ ......+.-+.| .+ +.-++..+..+++|++....+... ..+++|+..++.+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV-NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc-ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 678888875 33332222 122223344444 44 556788888999999887765432 4566788777766
Q ss_pred E-----------EcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC-------Cc--EEE
Q 001248 909 A-----------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-------QI--HFL 968 (1114)
Q Consensus 909 ~-----------~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd-------g~--~l~ 968 (1114)
+ .||||..+|.++.||.++.|.+.-......+|+...+.|.. ++-.|..|... |. +++
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~I 308 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRI 308 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEE
Confidence 5 47999999999999999999876544444445444443332 23333334432 22 233
Q ss_pred EEe--CCeEEEEEcCCCcee
Q 001248 969 VVH--ETQLAIFETTKLECV 986 (1114)
Q Consensus 969 ~~~--d~~i~iwd~~~~~~~ 986 (1114)
++. +..+++|.....+|.
T Consensus 309 tttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 309 TTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecccCCcceeEeeccchhhh
Confidence 433 356889988877776
No 433
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.94 E-value=2.8 Score=49.14 Aligned_cols=124 Identities=10% Similarity=0.098 Sum_probs=75.1
Q ss_pred CeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee-ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCC
Q 001248 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS 545 (1114)
Q Consensus 467 ~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 545 (1114)
...-+.-|.-++ ..+.-+...++.|||...+.....-. ...+.|.++.|...++++.+++.|..+.|.++--.....
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344455555555 33334445579999998887554332 357899999999999999999999999999984321000
Q ss_pred eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEEC
Q 001248 546 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 603 (1114)
Q Consensus 546 ~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 603 (1114)
... ...-..+..+. +..++.+.+....|.++|..++.+ ++.+.|++-
T Consensus 109 ~~~-~p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 109 TNK-GPSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred hcC-CcccceeEEEE--------eecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 000 00001222222 233444566667777777655443 467888774
No 434
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.94 E-value=13 Score=38.73 Aligned_cols=227 Identities=15% Similarity=0.220 Sum_probs=125.8
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEccC------CceeeeeEeecc-----ccCCeeEEEecCCCCe----------e
Q 001248 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHG------GDEVRQHLEIDA-----HVGGVNDIAFSHPNKQ----------L 480 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~dg~i~iwd~~~------~~~~~~~~~l~~-----h~~~V~~v~~s~d~~~----------~ 480 (1114)
.-+.|+++|.+.+-++....+...+||... ...+ ..++.. -....+.+.|+..... -
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L--~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPL--VVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccce--EEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 357799999998888887888999999871 1111 112221 2235777888754331 1
Q ss_pred EEEEecCCCCEEEEeCCCCcc-----eeEee-ccccC-EEEEeeccCCCceEEEEEe-cCCeEEEEEcCCCCCee--eec
Q 001248 481 CVITCGDDKTIKVWDATNGAK-----QYIFE-GHEAP-VYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRV--DYE 550 (1114)
Q Consensus 481 ~l~s~~~d~~i~iwd~~~~~~-----~~~~~-~h~~~-v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~--~~~ 550 (1114)
.++.+++||+|.-|...-+.. ...+. +..+. -..+++.....+.+|+.+. ..++|.++|-.-..... .+.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 367788999999998543222 11222 11122 3345554443345555554 47888888754221110 000
Q ss_pred CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC--
Q 001248 551 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-- 628 (1114)
Q Consensus 551 ~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-- 628 (1114)
.+. + -.-+.|-+-..+. ..--+....-++++..=+.+..-|.|-+||. .|..++.+...+....-..++..|
T Consensus 182 DP~--i-PagyAPFnIqnig--~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~ 255 (336)
T TIGR03118 182 DPA--L-PAGYAPFNVQNLG--GTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPES 255 (336)
T ss_pred CCC--C-CCCCCCcceEEEC--CeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhh
Confidence 000 0 0011111100000 0001112222344444455666789999997 678888886555444556777755
Q ss_pred ----CCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 629 ----DGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 629 ----d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
.|.+|+---.||+|..+|..++ +.+-.+
T Consensus 256 FG~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L 287 (336)
T TIGR03118 256 FGSLSGALLVGNFGDGTINAYDPQSG-AQLGQL 287 (336)
T ss_pred hCCCCCCeEEeecCCceeEEecCCCC-ceeeee
Confidence 5778887778999999999888 433333
No 435
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.94 E-value=2.7 Score=47.13 Aligned_cols=151 Identities=13% Similarity=0.060 Sum_probs=81.6
Q ss_pred CCeEEEEEecCCCcEEEEEe-----------CCC-cEEEEEccc--ce--EEEeecccccCeeEEEEcCCCCEEEEEeCC
Q 001248 860 PAATFLAFHPQDNNIIAIGM-----------DDS-SIQIYNVRV--DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD 923 (1114)
Q Consensus 860 ~~i~~l~~sp~d~~~la~g~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D 923 (1114)
.....++|.+ +|+++++-. ..+ .|.+++-.. |+ ....+.......+++++.++| +++ ++.+
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 3467788888 787776542 223 677776543 22 223333334456889999998 444 4444
Q ss_pred CcEEEEeCCCCccc---cccccccCCCC-CCCCCCceEEEEccCCcEEEE-EeC-------------------CeEEEEE
Q 001248 924 SQLCVWSSDGWEKQ---KNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLV-VHE-------------------TQLAIFE 979 (1114)
Q Consensus 924 ~~v~iwd~~~~~~~---~~~~~~~~~~~-~~~~~~i~~v~fspdg~~l~~-~~d-------------------~~i~iwd 979 (1114)
...++.+.+..... ....+..+... ....+....++|.|||.+.++ +.. +.+.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43334454432111 11122222111 001135678999999988776 421 3355555
Q ss_pred cCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC
Q 001248 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1016 (1114)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D 1016 (1114)
..+++. ..+ ..+ -.....++|+++|+++++-..+
T Consensus 171 pdg~~~-e~~-a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKL-RVV-AHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeE-EEE-ecC-cCCCccceECCCCCEEEEccCC
Confidence 554432 222 223 3456789999999987765433
No 436
>PHA02790 Kelch-like protein; Provisional
Probab=92.80 E-value=6.5 Score=45.87 Aligned_cols=184 Identities=10% Similarity=-0.027 Sum_probs=89.6
Q ss_pred eCCCEEEEEe-C-----CeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEcccc--eEE
Q 001248 828 KNDSYVMSAS-G-----GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVD--EVK 895 (1114)
Q Consensus 828 ~d~~~l~~~~-d-----g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~dg--~v~iwd~~~~--~~~ 895 (1114)
.++..+++|+ + .++..||..+.+.. ..+........ ++ .- ++.+.++|+.++ .+..||..++ ..+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EE-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 4556666665 3 24777887764432 22221111222 22 23 788888888643 5888887654 333
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCC---cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeC
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 972 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d 972 (1114)
..+.........++ -+|+..+.||.++ ++..||..+.+ +.......... -...+..-+|+..+.|
T Consensus 347 ~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~---W~~~~~m~~~r-----~~~~~~~~~~~IYv~G-- 414 (480)
T PHA02790 347 PSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ---WQFGPSTYYPH-----YKSCALVFGRRLFLVG-- 414 (480)
T ss_pred CCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE---EEeCCCCCCcc-----ccceEEEECCEEEEEC--
Confidence 33322111222222 3678888888654 46778876532 22221111110 0112223456555555
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCe
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLK 1028 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~ 1028 (1114)
|.+.+||..+.+-...-......... +++ .-+|+..+.|+.+ ..|.+||..+++
T Consensus 415 G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 415 RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 35778888766543222111101111 222 2366666777654 245566655543
No 437
>PHA03098 kelch-like protein; Provisional
Probab=92.70 E-value=5.9 Score=47.28 Aligned_cols=191 Identities=13% Similarity=0.119 Sum_probs=90.6
Q ss_pred CCcEEEEEeCCC------cEEEEEcccceEE--EeecccccCeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccc
Q 001248 871 DNNIIAIGMDDS------SIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQ 937 (1114)
Q Consensus 871 d~~~la~g~~dg------~v~iwd~~~~~~~--~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----~~v~iwd~~~~~~~ 937 (1114)
++.+++.|+.++ .+..||..+++-. ..+.........+.+ +++.++.||.+ ..+..||..+++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~-- 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK-- 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc--
Confidence 445555555432 4667777665422 112211122222232 67788888876 346778877643
Q ss_pred cccccccCCCCCCCCCCceEEEEccCCcEEEEEe---C----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEE
Q 001248 938 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---E----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1010 (1114)
Q Consensus 938 ~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~---d----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1010 (1114)
+........ + ..-.++ ..-+++..+.|+ + ..+..||..+.+-...-.... ...-.+ +...+++..
T Consensus 370 -W~~~~~lp~--~--r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~-~~~~~~~iy 441 (534)
T PHA03098 370 -WREEPPLIF--P--RYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGC-AIYHDGKIY 441 (534)
T ss_pred -eeeCCCcCc--C--CccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCce-EEEECCEEE
Confidence 222111111 0 011122 233556555543 1 358889987764432211110 111112 223356666
Q ss_pred EEEEcC--------CeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-----CcEEEEec
Q 001248 1011 YACFLD--------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEP 1077 (1114)
Q Consensus 1011 ~s~s~D--------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-----g~v~vW~i 1077 (1114)
+.|+.+ ..+.+||..+++-...-. ...+.. .. . .+.+ ++.+++.|+.+ +.+.++|+
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~r~--~~--~--~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSS--LNFPRI--NA--S--LCIF---NNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCceeeCCC--CCcccc--cc--e--EEEE---CCEEEEEcCCcCCcccceeEEEeC
Confidence 666543 238888988776443211 111111 11 1 2222 46777777765 46788887
Q ss_pred cCCCCcccC
Q 001248 1078 LESEGKWGV 1086 (1114)
Q Consensus 1078 ~~~~~~~~~ 1086 (1114)
.+.. |..
T Consensus 511 ~~~~--W~~ 517 (534)
T PHA03098 511 KTNT--WTL 517 (534)
T ss_pred CCCE--EEe
Confidence 7755 654
No 438
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.29 E-value=0.024 Score=61.16 Aligned_cols=147 Identities=18% Similarity=0.208 Sum_probs=97.3
Q ss_pred EEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEE
Q 001248 756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1114)
Q Consensus 756 ~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 835 (1114)
...+-+.+..++.++.+..+..||-.... ... .........+++..++..+++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~----------------------~le-----~n~tg~aldm~wDkegdvlav 91 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV----------------------ILE-----LNPTGKALDMAWDKEGDVLAV 91 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce----------------------ecc-----cCCchhHhhhhhccccchhhh
Confidence 34555666668888888777766532111 100 113444556777777877666
Q ss_pred Ee--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCC
Q 001248 836 AS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA 913 (1114)
Q Consensus 836 ~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d 913 (1114)
.. .+.+.+||+.+...-..-.+....-.-+.|++ +...++.|...|.+.||+..+.+.+...-.|..+++++++.+.
T Consensus 92 lAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 92 LAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE 170 (615)
T ss_pred hhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence 55 68999999976432221122222222378999 8889999999999999998887766666669999999999987
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 001248 914 LNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 914 ~~~l~s~s~D~~v~iwd~ 931 (1114)
+ +.+.++.|.++.+-..
T Consensus 171 d-~vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 171 D-YVILCDCDNTLSVTTQ 187 (615)
T ss_pred c-eeeecCcHHHHHHhhh
Confidence 5 5666777765554433
No 439
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=4.8 Score=39.13 Aligned_cols=178 Identities=10% Similarity=0.033 Sum_probs=93.9
Q ss_pred CCCEEEEEe---CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCe
Q 001248 829 NDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI 905 (1114)
Q Consensus 829 d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V 905 (1114)
+|.++.+.+ ...|++||+.+++.+....-....+..=-...-+..+.+..-.+|.-.+||..+.+++..+.. .+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 555666554 367999999998877554322111111001110334445566789999999999888777653 3333
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCc
Q 001248 906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 984 (1114)
Q Consensus 906 ~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~ 984 (1114)
++++- |+..|+.++...+++.-|.++-..... .....++..- ..+.-+-| -||...|- -.+..|...+..+|+
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~-v~VT~~g~pv--~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDT-VQVTDDGVPV--SKLNELEW-VDGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcce-EEEEECCeec--ccccceee-eccEEEEeeeeecceEEEcCCCCc
Confidence 55554 566677776666777777655322111 1111111100 11112222 13444443 244445555666666
Q ss_pred eeeeeecC----------CCCcCeeEEEECCCCC-EEEEE
Q 001248 985 CVKQWVPR----------ESSAPITHATFSCDSQ-LVYAC 1013 (1114)
Q Consensus 985 ~~~~~~~~----------~h~~~v~~l~~s~dg~-~l~s~ 1013 (1114)
.+.-+... .|..-...+++.|++. ++++|
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 55443321 2345677899999884 45554
No 440
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.99 E-value=15 Score=39.21 Aligned_cols=171 Identities=12% Similarity=0.069 Sum_probs=95.4
Q ss_pred eEEEEEcCCCccccccCC------CCCCeEEEEEecCCC----cEEEEEe-CCCcEEEEEcccceEEEeecccc------
Q 001248 840 KISLFNMMTFKTMATFMP------PPPAATFLAFHPQDN----NIIAIGM-DDSSIQIYNVRVDEVKSKLKGHS------ 902 (1114)
Q Consensus 840 ~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~----~~la~g~-~dg~v~iwd~~~~~~~~~l~~h~------ 902 (1114)
+|.+||+.+.+.++++.- ..+....+.+...++ .++.... ..+.|.|+|+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688899999888776532 234577788776332 3443333 34589999999987655554322
Q ss_pred -------------cCeeEEEEcC---CCCEEEEEeCCCcEEEEeCCCCcccc-----cc----ccccCCCCCCCCCCceE
Q 001248 903 -------------KRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQK-----NR----FLQIPTGRTPTAQSDTR 957 (1114)
Q Consensus 903 -------------~~V~~l~~s~---d~~~l~s~s~D~~v~iwd~~~~~~~~-----~~----~~~~~~~~~~~~~~i~~ 957 (1114)
+.+.+++.+| ++++|.-..-.+ -++|.+.+.-... .. ..+.. +... .....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKG--SQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccC--CCCce
Confidence 2366666655 666776665444 2445544321111 00 00110 1100 23467
Q ss_pred EEEccCCcEEEE-EeCCeEEEEEcCCCc---eeeeeecCCC-CcCeeEEEECC--CCCEEEEEE
Q 001248 958 VQFHQDQIHFLV-VHETQLAIFETTKLE---CVKQWVPRES-SAPITHATFSC--DSQLVYACF 1014 (1114)
Q Consensus 958 v~fspdg~~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~h-~~~v~~l~~s~--dg~~l~s~s 1014 (1114)
++++++|.+..+ .....|..|+..+.- ....+..+.. -..+..+.+.+ +|.+.+.++
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 899999998888 588899999988622 2222322222 35678888888 776655543
No 441
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.91 E-value=25 Score=41.40 Aligned_cols=181 Identities=10% Similarity=0.094 Sum_probs=93.9
Q ss_pred CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe--e--cccccCeeEEEEcCCC
Q 001248 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHAL 914 (1114)
Q Consensus 839 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~ 914 (1114)
-.|+||++. |..+..+.-....+..+.|+. +. -|++...+|++++|++.. +.+.. . ......|....|...|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence 348888874 565555443344889999996 44 555677999999999863 22222 1 1122334444444455
Q ss_pred CEEEEEeCCCcEEE-EeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE--EeC---C-eEEEEEcCCCceee
Q 001248 915 NVLVSSGADSQLCV-WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHE---T-QLAIFETTKLECVK 987 (1114)
Q Consensus 915 ~~l~s~s~D~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~--~~d---~-~i~iwd~~~~~~~~ 987 (1114)
++.-..+|++.+ -+.+.... ..+...++... .-.+....+++..... .-+ + .+..-+....+...
T Consensus 140 --Vavlt~~g~v~~i~~~~~~~~---~~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~ 211 (829)
T KOG2280|consen 140 --VAVLTVSGQVILINGVEEPKL---RKMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA 211 (829)
T ss_pred --eEEEecCCcEEEEcCCCcchh---hhCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceecccccccc
Confidence 333333444433 33322110 11111111110 1123333333222111 111 0 01111111111111
Q ss_pred eeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+. .-.+.+..+.+||+.++|+-=..+|.|.+-+.+..+..+.+.
T Consensus 212 -~~--~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 212 -LS--WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred -cC--CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 11 113578889999999999999999999999999888888776
No 442
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.89 E-value=23 Score=38.91 Aligned_cols=162 Identities=11% Similarity=0.110 Sum_probs=91.2
Q ss_pred CCCeEEEEEecCCCcEEEEEeCCCc------EEEEEccc--c--eEE-----Eeeccccc--------CeeEEEEcCCCC
Q 001248 859 PPAATFLAFHPQDNNIIAIGMDDSS------IQIYNVRV--D--EVK-----SKLKGHSK--------RITGLAFSHALN 915 (1114)
Q Consensus 859 ~~~i~~l~~sp~d~~~la~g~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~d~~ 915 (1114)
-+.+..+.+.+.++. +++.+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 345788888873454 445566777 66665543 1 001 11222112 233788888888
Q ss_pred EEEEEeCC------CcEEEEeCCCCccccccccccCC---------CCCCCCCCceEEEEccCCcEEEEE------eCC-
Q 001248 916 VLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPT---------GRTPTAQSDTRVQFHQDQIHFLVV------HET- 973 (1114)
Q Consensus 916 ~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~i~~v~fspdg~~l~~~------~d~- 973 (1114)
++++.=.+ ..|..++.+ +...... ..+. ..........+++++|||+.|.++ .|+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~--~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRF--PVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceE--ccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 88887777 778888876 3332211 1111 112233577899999999955542 232
Q ss_pred -e-------EE--EEEcCC-Cceeeeeec--CC-----CCcCeeEEEECCCCCEEEEEE-----cCCeEEEEEc
Q 001248 974 -Q-------LA--IFETTK-LECVKQWVP--RE-----SSAPITHATFSCDSQLVYACF-----LDATVCVFSA 1024 (1114)
Q Consensus 974 -~-------i~--iwd~~~-~~~~~~~~~--~~-----h~~~v~~l~~s~dg~~l~s~s-----~Dg~I~vwd~ 1024 (1114)
. ++ .||..+ ++....+.. +. ....|+.+.+-+|+++|+.-= ....++|+.+
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 1 34 455554 333443332 21 356789999999999877422 2344555544
No 443
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.77 E-value=8.4 Score=42.62 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=88.7
Q ss_pred EEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCC------CceEEEEEecCCeEEEEEcCCCC
Q 001248 471 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE------NIQFIFSTALDGKIKAWLYDNLG 544 (1114)
Q Consensus 471 v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~d~~i~~wd~~~~~ 544 (1114)
+-...++..+++..|+....++--|++.|+.+..+.-|...+ +.+.|.. +.+.|+-. .+..|.-.|.+..+
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGl-S~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGL-SDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEee-cccceEEecccccC
Confidence 333334444466777778889999999999999998776664 3443332 12234433 34444444544332
Q ss_pred CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeE
Q 001248 545 SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 624 (1114)
Q Consensus 545 ~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 624 (1114)
..............-.|+.- ......++++++..|.|++||.-..+....+++-+. .|..+
T Consensus 549 NKi~v~esKdY~tKn~Fss~-----------------~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~i 609 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSG-----------------MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHI 609 (776)
T ss_pred Cceeeeeehhcccccccccc-----------------ccccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeee
Confidence 11111111111111111111 011234799999999999999644444444444443 68889
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 625 RFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 625 ~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
..+.+|+++++.+. ..+.+-|+.
T Consensus 610 dvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 610 DVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred EeecCCcEEEEeec-ceEEEEecc
Confidence 99999999887765 567777654
No 444
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.74 E-value=2.4 Score=51.46 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=64.3
Q ss_pred CccEEEEeeCCC--EEEEEeCCeEEEEEcCCCcc-ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 820 AVPCFALSKNDS--YVMSASGGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 820 ~v~~v~~s~d~~--~l~~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
...++.|+|.-. .++...|+.|++.-+.-... ...+. .....++++|+| .|+.+++|...|++.-|... ++...
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~ 233 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKS 233 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEecc-ccceeeEecCCCeEEEeecc-cceee
Confidence 345566666433 33333488888887653222 22222 456789999999 99999999999999988754 33333
Q ss_pred eecc----cccCeeEEEEcCCCCEEEEE
Q 001248 897 KLKG----HSKRITGLAFSHALNVLVSS 920 (1114)
Q Consensus 897 ~l~~----h~~~V~~l~~s~d~~~l~s~ 920 (1114)
.+.+ ....|.+|+|-....+|++-
T Consensus 234 ~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 234 EIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred cccCCCcCCCcceeEEEEecceeEEEEe
Confidence 3322 14679999998776676653
No 445
>PRK13684 Ycf48-like protein; Provisional
Probab=91.64 E-value=25 Score=38.78 Aligned_cols=156 Identities=12% Similarity=0.048 Sum_probs=86.7
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCcEEE-EeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEc
Q 001248 902 SKRITGLAFSHALNVLVSSGADSQLCV-WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 980 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l~s~s~D~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~ 980 (1114)
...+.++.+.+++.+++++ ..|.+.. ++-. ++ .+..+... ....+..+.+.+++..++++..|.+.+=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~g-g~--tW~~~~~~-----~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPG-QT--AWTPHQRN-----SSRRLQSMGFQPDGNLWMLARGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCC-CC--eEEEeeCC-----CcccceeeeEcCCCCEEEEecCCEEEEccC
Confidence 4568899999988666554 4554432 2211 11 11122111 113678999999999988887776653234
Q ss_pred CCCceeeeeecC--CCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCC
Q 001248 981 TKLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1058 (1114)
Q Consensus 981 ~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1058 (1114)
..+..-...... .....+.++.+.+++..++++ .+|.|. ...+.|+.-.........+. ..+ .+.|..
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~- 312 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD- 312 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC-
Confidence 444332221111 113457889999988766544 577665 45566655443321111111 133 666664
Q ss_pred CCCeEEEEeCCCcEEEEec
Q 001248 1059 EPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1059 d~~~l~s~~~Dg~v~vW~i 1077 (1114)
++....++..|.|..|+-
T Consensus 313 -~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 313 -PEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred -CCceEEECCCceEEEecC
Confidence 344555667899887764
No 446
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=6.9 Score=38.07 Aligned_cols=183 Identities=12% Similarity=0.124 Sum_probs=98.5
Q ss_pred CCcEEEEEeCC--CcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCccccccccccCCC
Q 001248 871 DNNIIAIGMDD--SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTG 947 (1114)
Q Consensus 871 d~~~la~g~~d--g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 947 (1114)
+++++.+.+.- ..|++||+.+|+.+..-.-....+.+=-...-|.++. -.=.||.-.++|.++-+. +.....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~-----lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE-----LGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh-----hccccc
Confidence 56667665543 3799999999887754332222222111111122222 223467778888877332 211111
Q ss_pred CCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCcCeeE---EEECCCCCEEEEEEcCCeEEEEE
Q 001248 948 RTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITH---ATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 948 ~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~---l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
.-..-....|++-|+.+ +...+..-|.++..............+|.. +-|- ||...|-.-.+..|..-|
T Consensus 130 ------~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~ 202 (262)
T COG3823 130 ------EGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID 202 (262)
T ss_pred ------CCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence 11234445566666654 445566667666555444332222333332 3332 676666666667777788
Q ss_pred cCCCeeeEEeCCCcccCCC----CCCCCccceEEEecCCCCCeEEEEe
Q 001248 1024 AANLKLRCRINPSAYLPAG----VSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
.++|+.+..+..+...+.- .+....+ .+++.|+.+++++||-
T Consensus 203 p~sGrV~~widlS~L~~~~~~~~~~~nvlN--GIA~~~~~~r~~iTGK 248 (262)
T COG3823 203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLN--GIAHDPQQDRFLITGK 248 (262)
T ss_pred CCCCcEEEEEEccCCchhcCcccccccccc--ceeecCcCCeEEEecC
Confidence 8999988877644332221 1112233 7899997667888874
No 447
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.54 E-value=9.8 Score=42.78 Aligned_cols=203 Identities=13% Similarity=0.061 Sum_probs=107.5
Q ss_pred EEEEEeCCCcEEEEEcccceEEEeeccc--ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCC
Q 001248 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 951 (1114)
Q Consensus 874 ~la~g~~dg~v~iwd~~~~~~~~~l~~h--~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 951 (1114)
.+.++..+|.|.-.|..+++.+.....- ...+.+-.+..+|+ ++.++.++.+..+|..+++..-...... .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~---~--- 142 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG---S--- 142 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC---C---
Confidence 3444577888888888887755332211 12222223333665 7778888888888887655433222211 0
Q ss_pred CCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCC-CCcCeeEEEECCCCCEEEEEEc--CCeEEEEEcCCCe
Q 001248 952 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFL--DATVCVFSAANLK 1028 (1114)
Q Consensus 952 ~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~s~--Dg~I~vwd~~~~~ 1028 (1114)
-.+..-.+-.++..++.+.++.+...|..+|+..-...... -...+..-....++ .++.+.. ++.+.-.|..+|.
T Consensus 143 -~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 -PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred -eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCc
Confidence 01222233334444444456777777777777654433211 01111111112233 3444544 6677778888888
Q ss_pred eeEEeCCCcccCCCCC--CCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcccCCCC
Q 001248 1029 LRCRINPSAYLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1089 (1114)
Q Consensus 1029 ~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~~~ 1089 (1114)
..-............. ...+..-.+- . +..+..++.+|.+...+..+++..|+.+.+
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~-v---~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVY-V---DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEE-E---CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 8876432222221100 0001111111 1 233577888999999999999999999887
No 448
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.42 E-value=2.7 Score=48.18 Aligned_cols=77 Identities=16% Similarity=0.316 Sum_probs=53.2
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC
Q 001248 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1114)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 499 (1114)
...++++.-+|.|+.++.+..||+|++|++......+ +.....+-..+.|...| +++...|..+.-|. ++|
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~dg 84 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-EDG 84 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-ccC
Confidence 3467788888999999999999999999987644321 22233345567776554 56677788888887 556
Q ss_pred cceeEe
Q 001248 500 AKQYIF 505 (1114)
Q Consensus 500 ~~~~~~ 505 (1114)
-..+.+
T Consensus 85 vvqqqf 90 (1636)
T KOG3616|consen 85 VVQQQF 90 (1636)
T ss_pred cchhhc
Confidence 444444
No 449
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.41 E-value=0.44 Score=55.69 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=93.2
Q ss_pred CCCCceEEEEc----CCCCeEEEEEecCCcEEEEEcC--CcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE--
Q 001248 357 QGSSPMSMDFH----PVQQTLLLVGTNVGDIGLWEVG--SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-- 428 (1114)
Q Consensus 357 h~~~v~~v~~s----pdg~~ll~tg~~dg~v~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~-- 428 (1114)
..+.|-.++|- |.+.. .-|...||+++ .|+......+++. ..-...+.-|.|
T Consensus 131 f~G~v~dl~fah~~~pk~~~------~vg~lfVy~vd~l~G~iq~~l~v~~~--------------~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGRR------LVGELFVYDVDVLQGEIQPQLEVTPI--------------TPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHHH------HhhhhheeehHhhccccccceEEeec--------------CcCCCCcceeeecc
Confidence 45566666663 33432 23677888875 3444433333222 222223334444
Q ss_pred -cCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEe-----------cCCCCeeEEEEecCCCCEEEEeC
Q 001248 429 -SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-----------SHPNKQLCVITCGDDKTIKVWDA 496 (1114)
Q Consensus 429 -spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~-----------s~d~~~~~l~s~~~d~~i~iwd~ 496 (1114)
-++.-++..+-.+++|++.++++...- -+.+|...+..++| ||||+ .++++..||.++.|-+
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~~----l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALRS----LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHHH----HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 447788888888999998877764431 35568887777665 78888 7888888888877765
Q ss_pred C-----CCcceeEeeccccCEEEEeeccCCCc---------eEEEEEec-CCeEEEEEcCCCCCe
Q 001248 497 T-----NGAKQYIFEGHEAPVYSVCPHHKENI---------QFIFSTAL-DGKIKAWLYDNLGSR 546 (1114)
Q Consensus 497 ~-----~~~~~~~~~~h~~~v~~~~~~~~~~~---------~~l~s~~~-d~~i~~wd~~~~~~~ 546 (1114)
. ...|+...+.|.+.-. +||.+..+. .++++++. +..+++|....-.+.
T Consensus 265 yi~g~~~~rclhewkphd~~p~-vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPR-VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCc-eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3 2345556666663322 233222211 23444443 556888865544433
No 450
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.28 E-value=0.72 Score=31.74 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=24.6
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecC--CcEEEE
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLW 386 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~d--g~v~iw 386 (1114)
.........+..|||||++|+.++..+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344566778999999999988888877 766666
No 451
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.27 E-value=8.3 Score=45.05 Aligned_cols=186 Identities=12% Similarity=0.092 Sum_probs=86.9
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeee-EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE-Ee
Q 001248 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH-LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV-WD 495 (1114)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~-~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i-wd 495 (1114)
.|. .+..+.||.+..+|+ ...+|+++||++.... +... .........|..+.|..+|= .+.+. +|.+.+ -+
T Consensus 82 ~~~-~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt~--~g~v~~i~~ 154 (829)
T KOG2280|consen 82 KHG-ELIGMGWSDDEELIC-VQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLTV--SGQVILING 154 (829)
T ss_pred cCC-CeeeecccCCceEEE-EeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEec--CCcEEEEcC
Confidence 344 888999997766554 5689999999987532 2110 11122333566666666554 33333 344433 33
Q ss_pred CCCCcceeEeec-cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 496 ATNGAKQYIFEG-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 496 ~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
.... .++++.. ........||..-.++ +-.+ .+-++.-.-....+......+....+++..
T Consensus 155 ~~~~-~~~~~~diP~~~~~~~~Wt~~~~~-~~~~-------~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~--------- 216 (829)
T KOG2280|consen 155 VEEP-KLRKMPDIPYNELPKSCWTVFQPH-RQST-------ILLDVDVAVGLHICQVEESRVQLHALSWPN--------- 216 (829)
T ss_pred CCcc-hhhhCCCCCCccCCCcceeEecCC-Ccce-------eEEeechhhhhcccceecccccccccCCCC---------
Confidence 3221 2222221 0011111222211110 0000 111111000000111111222333333321
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCC
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 629 (1114)
..+.-+.++|+.++++--...|.|.+-+.+..+....+....+..+ ..++|..+
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcgn 270 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCGN 270 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCch-HhceeecC
Confidence 1444566777777888888999999988887777666654333211 24555543
No 452
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.16 E-value=48 Score=41.29 Aligned_cols=174 Identities=11% Similarity=0.155 Sum_probs=102.5
Q ss_pred CCCCccEEEEe---e----CCCEEEEEeCCeEEEEEcCCCc---------------cccccC---CCCCCeEEEEEecCC
Q 001248 817 PEEAVPCFALS---K----NDSYVMSASGGKISLFNMMTFK---------------TMATFM---PPPPAATFLAFHPQD 871 (1114)
Q Consensus 817 ~~~~v~~v~~s---~----d~~~l~~~~dg~i~iwd~~~~~---------------~~~~~~---~~~~~i~~l~~sp~d 871 (1114)
...+|..|+|. . ..++|++-....+.|+...-.+ .+..+. ....+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46778888887 2 2347777777778888732111 111111 123356677788777
Q ss_pred CcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCC
Q 001248 872 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT 951 (1114)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 951 (1114)
...||+.+..|...||++..... .+. .. +-++....|+| +.|.+. +
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~-----~~~-~~----------~~~~~~~~gsi-~~d~~e--------~--------- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPK-----RKS-SN----------LRLSRNISGSI-IFDPEE--------L--------- 203 (765)
T ss_pred cceEEEEeccCcEEEEEeccccc-----cCC-cc----------eeeccCCCccc-cCCCcc--------c---------
Confidence 77788888888888888721110 000 11 11111122222 222221 0
Q ss_pred CCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCC--CCEEEEEEcCCeEEEEEcCCC
Q 001248 952 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 952 ~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
..-..+.|.++-..|+++....+.++|+.+......+........|..+.-+++ +..++.. ...|...++...
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 134578899998899999899999999988766442333344678999998887 3333333 367888888763
No 453
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=91.00 E-value=31 Score=44.66 Aligned_cols=149 Identities=14% Similarity=0.198 Sum_probs=88.9
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
|-..++.|.-+++|.++=+ .|+.++.||..... |..- -..-...++.+.-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEEe---ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 6677888888888886332 68889999877642 2210 011223556666666777666
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc------c--eeEeecc
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA------K--QYIFEGH 508 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------~--~~~~~~h 508 (1114)
.++. .|-|+..+.... ..-..+.+...+++|.- .+.++....++.+|++.... . ...+.+-
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 244555544221 12235677888899984 46777777778999987541 1 1123333
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 542 (1114)
.....+|.+ +++ .|+....+|.++.=++..
T Consensus 488 ~a~A~~VgL--s~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGL--SND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheee--cCC--eEEEEeCCCCEEeccccc
Confidence 334555554 332 688888888887776654
No 454
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.80 E-value=0.7 Score=32.20 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=27.7
Q ss_pred CCeEEEEEecCCC--cEEEEEeCCCcEEEEEccc
Q 001248 860 PAATFLAFHPQDN--NIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 860 ~~i~~l~~sp~d~--~~la~g~~dg~v~iwd~~~ 891 (1114)
+.|.++.|||..+ .+||..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3689999998555 7999999999999999985
No 455
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.59 E-value=1 Score=31.35 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=26.8
Q ss_pred CCeeEEEEcCC-C--CeEEEEeCCCeEEEEEccCC
Q 001248 421 VSVNRVIWSPD-G--SLFGVAYSRHIVQIYSYHGG 452 (1114)
Q Consensus 421 ~~V~~l~~spd-g--~~las~~~dg~i~iwd~~~~ 452 (1114)
++|.++.|||+ + .+|+.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 37899999984 4 58998888899999999863
No 456
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.50 E-value=13 Score=36.93 Aligned_cols=156 Identities=13% Similarity=0.186 Sum_probs=84.4
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcC--CCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC------cEEEE---E
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIY---N 888 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg------~v~iw---d 888 (1114)
....++.+..+..+++.+..+|.+|++. ..+.+.++..- +.|..++++. .|++|++--++. .+|+| .
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 4455555554445555567889999988 33445556543 7799999999 899999864332 45665 2
Q ss_pred cc--cceEE-Eeeccc---------------------ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc--cccc
Q 001248 889 VR--VDEVK-SKLKGH---------------------SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK--NRFL 942 (1114)
Q Consensus 889 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~ 942 (1114)
.. ..+.+ ..+-|| +..+.+++-.|-..-|+.|+ ++++.+|.+....... ...+
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~l 175 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFL 175 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEE
Confidence 22 11111 122232 23456666666444455554 4568999887643311 1111
Q ss_pred ccCCCCCCC--CCCceEEEEccCCcEEEEEeCCeEEEEEc
Q 001248 943 QIPTGRTPT--AQSDTRVQFHQDQIHFLVVHETQLAIFET 980 (1114)
Q Consensus 943 ~~~~~~~~~--~~~i~~v~fspdg~~l~~~~d~~i~iwd~ 980 (1114)
......... ...+..++| -+.|+|..++..++++.+
T Consensus 176 DFe~~l~~~~~~~~p~~v~i--c~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 176 DFERSLIDHIDNFKPTQVAI--CEGYIAVMSDLEVLVLKL 213 (215)
T ss_pred echhhhhheecCceEEEEEE--EeeEEEEecCCEEEEEEE
Confidence 111000000 001122222 467888888888887765
No 457
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.49 E-value=24 Score=36.57 Aligned_cols=150 Identities=14% Similarity=0.088 Sum_probs=89.9
Q ss_pred ccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCC--CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---eE
Q 001248 821 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EV 894 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~---~~ 894 (1114)
+..+.++. ++...+. +..++|.|+.+......+.. ..+.-.++.. .|++..++..|.-+.++|+.+- .+
T Consensus 89 ~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 89 FADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCcee
Confidence 44455544 3555555 67799999987665443321 1233445555 5678887876667788888753 34
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCe
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ 974 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~ 974 (1114)
..........-..++.| |++-..+..|+-+.|-|+...... .+.++......+..+..+++-.+++....+
T Consensus 164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP------vli~~~n~g~g~~sv~vsdnr~y~vvy~eg- 234 (370)
T COG5276 164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP------VLIGSYNTGPGTYSVSVSDNRAYLVVYDEG- 234 (370)
T ss_pred eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC------eEEEEEecCCceEEEEecCCeeEEEEcccc-
Confidence 44444444444667776 777778889999999999874321 122233322356777777776666654333
Q ss_pred EEEEEcCCCc
Q 001248 975 LAIFETTKLE 984 (1114)
Q Consensus 975 i~iwd~~~~~ 984 (1114)
+.+-|..+.+
T Consensus 235 vlivd~s~~s 244 (370)
T COG5276 235 VLIVDVSGPS 244 (370)
T ss_pred eEEEecCCCC
Confidence 4444544433
No 458
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.13 E-value=37 Score=38.20 Aligned_cols=151 Identities=9% Similarity=-0.013 Sum_probs=82.6
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCc
Q 001248 905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 984 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~ 984 (1114)
...+..++|+.+++.+..-..++-||-... .+..+.... ...+..+.|.++|..++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~---~W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP---YWQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc---ceEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 445567788777766654333333443220 011122221 13578999999999998887777544 333333
Q ss_pred e-----eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 985 C-----VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 985 ~-----~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
. ........-...++++.|.+++..+++| .+|.+.... +.|+.-.+....... ....+ .+.|.+ +
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~-----~~~ly--~v~f~~-~ 381 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNI-----AANLY--SVKFFD-D 381 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCC-----Cccee--EEEEcC-C
Confidence 1 1211111112458999999888876655 678777654 555554333211111 11244 788875 2
Q ss_pred CCeEEEEeCCCcEEEE
Q 001248 1060 PNEFALGLSDGGVHVF 1075 (1114)
Q Consensus 1060 ~~~l~s~~~Dg~v~vW 1075 (1114)
+.....+.+|.|.-|
T Consensus 382 -~~g~~~G~~G~il~~ 396 (398)
T PLN00033 382 -KKGFVLGNDGVLLRY 396 (398)
T ss_pred -CceEEEeCCcEEEEe
Confidence 445555678887655
No 459
>PHA02790 Kelch-like protein; Provisional
Probab=90.11 E-value=16 Score=42.75 Aligned_cols=185 Identities=7% Similarity=-0.024 Sum_probs=91.8
Q ss_pred CCcEEEEEeCCC-----cEEEEEcccce--EEEeecccccCeeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCccccccc
Q 001248 871 DNNIIAIGMDDS-----SIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRF 941 (1114)
Q Consensus 871 d~~~la~g~~dg-----~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D--~~v~iwd~~~~~~~~~~~ 941 (1114)
++.++++|+.++ .+..||..+++ .+..+.........+. -++...+.||.+ .++..||..+++ +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~---W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAA---WVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCe---EEE
Confidence 567778887653 57778877654 2223322222222222 367777888764 357788865532 222
Q ss_pred cccCCCCCCCCCCceEEEEccCCcEEEEE-eC---CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC
Q 001248 942 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1017 (1114)
Q Consensus 942 ~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d---~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg 1017 (1114)
+...... .....+..-+|+..+.| .+ ..+..||..+.+-...-........ .++ ..-+|+..+.| |
T Consensus 346 ~~~l~~~-----r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~-~~~~~~IYv~G---G 415 (480)
T PHA02790 346 MPSLLKP-----RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCA-LVFGRRLFLVG---R 415 (480)
T ss_pred CCCCCCC-----CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceE-EEECCEEEEEC---C
Confidence 2211110 01112233456666663 33 3577888876644322111110111 122 23356655555 4
Q ss_pred eEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-----CcEEEEeccCCC
Q 001248 1018 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1081 (1114)
Q Consensus 1018 ~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-----g~v~vW~i~~~~ 1081 (1114)
.+.+||..+++-... . .++...... .++.. ++++.+.|+.+ .++.++|+.+.+
T Consensus 416 ~~e~ydp~~~~W~~~-~---~m~~~r~~~-----~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 416 NAEFYCESSNTWTLI-D---DPIYPRDNP-----ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEecCCCCcEeEc-C---CCCCCcccc-----EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 577899877654422 1 122111111 22222 56788888765 357788887755
No 460
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.04 E-value=14 Score=40.57 Aligned_cols=113 Identities=10% Similarity=0.116 Sum_probs=67.9
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCc------EEEEeCCCCc--ccc-----ccccccCCCCCC--CCCCceEEEEccCCcE
Q 001248 902 SKRITGLAFSHALNVLVSSGADSQ------LCVWSSDGWE--KQK-----NRFLQIPTGRTP--TAQSDTRVQFHQDQIH 966 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l~s~s~D~~------v~iwd~~~~~--~~~-----~~~~~~~~~~~~--~~~~i~~v~fspdg~~ 966 (1114)
-+.+.+|.+.+++..++..+.++. +..+++.... ... ...+....+..- ......++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 355778889866667777777777 6666655411 111 111111111110 0113468888888988
Q ss_pred EEEE-eC------CeEEEEEcCCCceeeeeecC-------------CCCcCeeEEEECCCCCEEEEEEc
Q 001248 967 FLVV-HE------TQLAIFETTKLECVKQWVPR-------------ESSAPITHATFSCDSQLVYACFL 1015 (1114)
Q Consensus 967 l~~~-~d------~~i~iwd~~~~~~~~~~~~~-------------~h~~~v~~l~~s~dg~~l~s~s~ 1015 (1114)
+++. .+ ..|..++.. |+....+... ..+...-+|+++|||+.|+++.+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 8885 45 678888876 6655444211 13567889999999997776653
No 461
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.98 E-value=38 Score=38.10 Aligned_cols=152 Identities=9% Similarity=0.030 Sum_probs=84.1
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEEEEccc--ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 001248 863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR 940 (1114)
Q Consensus 863 ~~l~~sp~d~~~la~g~~dg~v~iwd~~~--~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~ 940 (1114)
..+..++ ++.++++|..-..++-||--. .+.+ . ......++++.|.+++.+++++ .+|.+. |..+.++.-...
T Consensus 242 ~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~-~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 242 STVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPH-N-RASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeEEEcC-CCCEEEEECCccEEEecCCCCcceEEe-c-CCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 4455666 777777665443333344321 1211 1 2234568999999998877655 566543 444433211000
Q ss_pred ccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeee-cCCCCcCeeEEEECCCCCEEEEEEcCCeE
Q 001248 941 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDATV 1019 (1114)
Q Consensus 941 ~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I 1019 (1114)
........ .....+..+.|.+++..++++..|.+.... ..|+.-.... ...-....+.+.|.++++.+++| .+|.|
T Consensus 317 ~f~~~~~~-~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 317 DFEEADIK-SRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred ceeecccC-CCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 01111000 011247889999999999999888776653 3333322111 12224578899998887776655 58877
Q ss_pred EEE
Q 001248 1020 CVF 1022 (1114)
Q Consensus 1020 ~vw 1022 (1114)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
No 462
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.46 E-value=8.3 Score=38.22 Aligned_cols=157 Identities=11% Similarity=0.080 Sum_probs=86.9
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--e--CC---eEEEE
Q 001248 906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H--ET---QLAIF 978 (1114)
Q Consensus 906 ~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~--d~---~i~iw 978 (1114)
..++-+.. ..|..+.....|.+|++...+.. .+..+. +.+.|..+.++..|+||++- . .. .+|+|
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~---~~~~F~----Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECP---LLCTFS----TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCc---eeEEEc----chhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 34444432 34444456677999999843322 222221 22578999999999999992 1 22 45664
Q ss_pred ---EcC--CCceeeeeecCC---------------------CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee-eE
Q 001248 979 ---ETT--KLECVKQWVPRE---------------------SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL-RC 1031 (1114)
Q Consensus 979 ---d~~--~~~~~~~~~~~~---------------------h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~-~~ 1031 (1114)
+.. ..+.++.-. -| -+.++.+++-.|-..-|++|+ ++.+.+|.+..+.. ..
T Consensus 93 ~NWr~~~~~~~~v~vRi-aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~ 170 (215)
T PF14761_consen 93 FNWRSQKEENSPVRVRI-AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSE 170 (215)
T ss_pred EEhhhhcccCCcEEEEE-cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecc
Confidence 222 112222110 01 144677888888666666675 67899998765444 21
Q ss_pred E---eCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1032 R---INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1032 ~---~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
. +.....+-.. +.. ..|..+++. +++++..+ +-.+++.++.
T Consensus 171 ~~~~lDFe~~l~~~-~~~-~~p~~v~ic---~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 171 KFSFLDFERSLIDH-IDN-FKPTQVAIC---EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cccEEechhhhhhe-ecC-ceEEEEEEE---eeEEEEec-CCEEEEEEEe
Confidence 1 1111111111 111 556677776 46777665 7777777763
No 463
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.99 E-value=23 Score=40.33 Aligned_cols=111 Identities=18% Similarity=0.183 Sum_probs=62.0
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce--EEEeec-----ccccCeeEEEEcCCC------CEEEEEe-C---
Q 001248 860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--VKSKLK-----GHSKRITGLAFSHAL------NVLVSSG-A--- 922 (1114)
Q Consensus 860 ~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~--~~~~l~-----~h~~~V~~l~~s~d~------~~l~s~s-~--- 922 (1114)
.....|+|.| |+++|++--..|.|++++..++. .+..+. .-.+...+|+|+|+- .+|...- .
T Consensus 30 ~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 30 NKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 4578899999 88888766557999999865542 222121 124567899999874 2333321 1
Q ss_pred ------CCcEEEEeCCCC--cccc-ccccccCCCCCCCCCCceEEEEccCCcEEEEEeCC
Q 001248 923 ------DSQLCVWSSDGW--EKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 973 (1114)
Q Consensus 923 ------D~~v~iwd~~~~--~~~~-~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~ 973 (1114)
...|.-|.+... .... ...+....... .+.-..++|.|||.+.++..|+
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~--~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN--DHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCC--CcCCceEEECCCCcEEEEECCC
Confidence 233544555421 1111 11121111110 1345789999999887774443
No 464
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.59 E-value=20 Score=41.64 Aligned_cols=148 Identities=14% Similarity=0.131 Sum_probs=74.4
Q ss_pred CCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEE
Q 001248 880 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959 (1114)
Q Consensus 880 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 959 (1114)
..+...++|.. |.++..+.........+...++|.+++..+ ..+..+|+....... .....+.. ..=..+.
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~---~~l~~~~~---~~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWE---YDLPGGYY---DFHHDID 196 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEE---EE--TTEE----B-S-EE
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEe---eecCCccc---ccccccE
Confidence 34455555533 444444433222222266778898887665 668888876532111 11111100 0014577
Q ss_pred EccCCcEEEEEe--------------CCeEEEEEcCCCceeeeeecCCCC-------------------------cCeeE
Q 001248 960 FHQDQIHFLVVH--------------ETQLAIFETTKLECVKQWVPRESS-------------------------APITH 1000 (1114)
Q Consensus 960 fspdg~~l~~~~--------------d~~i~iwd~~~~~~~~~~~~~~h~-------------------------~~v~~ 1000 (1114)
.-|+|++|+.+. +..|..+| .+|+.+..|....|- -.+.+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 889999988754 23566777 788877776543331 24788
Q ss_pred EEECC-CCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCc
Q 001248 1001 ATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSA 1037 (1114)
Q Consensus 1001 l~~s~-dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~ 1037 (1114)
+.+.+ ++.+|+++-.-..|...|..+++....+....
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 99988 44445544444589999999999988877443
No 465
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.34 E-value=2.6 Score=45.62 Aligned_cols=159 Identities=13% Similarity=0.070 Sum_probs=98.2
Q ss_pred CCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccc-ccc-CCCCC----CeE-EEEEecCCCcEEEEEeCCCcEEEE-E
Q 001248 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM-ATF-MPPPP----AAT-FLAFHPQDNNIIAIGMDDSSIQIY-N 888 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~-~~~-~~~~~----~i~-~l~~sp~d~~~la~g~~dg~v~iw-d 888 (1114)
....+..+-..|||+.+..-+..++.++++.+.... +++ ...++ .|+ .+..-. +|.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 456688889999999999888889999998754322 121 11111 122 222223 67778889999998877 4
Q ss_pred cccc-e----EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 889 VRVD-E----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 889 ~~~~-~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
+..+ + .++.++-...+|..+.--...+-+++-+..|++.++.....+..-. .. ....+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~---~~------~~~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF---ER------AYQAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh---hh------hhcCcceeeeCcc
Confidence 4432 1 2222222223444333333445678888889988876544221111 00 0125678999999
Q ss_pred CcEEEEEeCCeEEEEEcCCCce
Q 001248 964 QIHFLVVHETQLAIFETTKLEC 985 (1114)
Q Consensus 964 g~~l~~~~d~~i~iwd~~~~~~ 985 (1114)
+.+|++-..|+++++.+++...
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred cchheeecCCceEEEEecCCCC
Confidence 9999998889999998875443
No 466
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.34 E-value=12 Score=44.48 Aligned_cols=173 Identities=14% Similarity=0.153 Sum_probs=90.7
Q ss_pred CCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEE
Q 001248 830 DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 909 (1114)
Q Consensus 830 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~ 909 (1114)
..+++++..+.|.||+........ ...++..+...| .+. ...|+.+..|- ..| .|+.|.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~~--~~~D~~~s~~p----------~PH--tIN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EFT--STPDRLISTWP----------FPH--TINFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---ccc--ccccccccCCC----------CCc--eeeEEE
Confidence 778888889999999986432211 011112222222 111 12233222222 112 133332
Q ss_pred Ec--CCCCEEEEEeCCCcEEEEeCCCCcc----c-------cccccccCCCCCCCCCCceEEEEc--cCCcEEEEEeC-C
Q 001248 910 FS--HALNVLVSSGADSQLCVWSSDGWEK----Q-------KNRFLQIPTGRTPTAQSDTRVQFH--QDQIHFLVVHE-T 973 (1114)
Q Consensus 910 ~s--~d~~~l~s~s~D~~v~iwd~~~~~~----~-------~~~~~~~~~~~~~~~~~i~~v~fs--pdg~~l~~~~d-~ 973 (1114)
.. -+...|+.|..||.|.+|.++.--. . .......+.-+.....+..+++++ ...++||++.+ .
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 2445677788888888886532100 0 000000000111122467889998 88899998755 4
Q ss_pred eEEEEEcCCC--ceeeeeecCCCCcCeeEEEECCCC---C---EEEEEEcCCeEEEEEc
Q 001248 974 QLAIFETTKL--ECVKQWVPRESSAPITHATFSCDS---Q---LVYACFLDATVCVFSA 1024 (1114)
Q Consensus 974 ~i~iwd~~~~--~~~~~~~~~~h~~~v~~l~~s~dg---~---~l~s~s~Dg~I~vwd~ 1024 (1114)
.|.||-.... +.... ....|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~-~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHV-PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccc-cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 5666544332 21111 112356789999997644 2 7888999999999887
No 467
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.59 E-value=8.6 Score=48.69 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=41.6
Q ss_pred eEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee
Q 001248 956 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1114)
Q Consensus 956 ~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~ 1029 (1114)
.+..+......+.....+.+.+|+.........+...++. .+.++..++++..||.+.+||++.+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 202 LQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQL-------ESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ceeeeecCCCcceeeeeeeeeehhcccccchhhccccccc-------CccCCceEEEEEecCCEEeeecCCCce
Confidence 3333333444444444455555555444443344332222 288999999999999999999999866
No 468
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.25 E-value=3.5 Score=44.83 Aligned_cols=123 Identities=11% Similarity=0.128 Sum_probs=80.4
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
.+++|.++.||+|.+ +||+-..+.+|.+.+....+.....+ ...+.-+..|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhccCcceeEEEEEecC-eeEE
Confidence 466999999999999 69999999999999985433221100 012223346899999866 6677
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 499 (1114)
.....| +-+|.+...+ +.......|+..|+--.|+++..-.+++|+-..+++.=+-+.++
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 766666 7777765432 22224567888999999999988533444434444444444443
No 469
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.13 E-value=57 Score=36.64 Aligned_cols=205 Identities=15% Similarity=0.114 Sum_probs=103.5
Q ss_pred EcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEE
Q 001248 366 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQ 445 (1114)
Q Consensus 366 ~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~ 445 (1114)
.--||+ +.++..+|.|.-.|.+++..+ |.... . +....+..-.+..+|+ |..++.++.+.
T Consensus 65 ~~~dg~--v~~~~~~G~i~A~d~~~g~~~-------W~~~~---------~-~~~~~~~~~~~~~~G~-i~~g~~~g~~y 124 (370)
T COG1520 65 ADGDGT--VYVGTRDGNIFALNPDTGLVK-------WSYPL---------L-GAVAQLSGPILGSDGK-IYVGSWDGKLY 124 (370)
T ss_pred EeeCCe--EEEecCCCcEEEEeCCCCcEE-------ecccC---------c-CcceeccCceEEeCCe-EEEecccceEE
Confidence 344565 555678888888888888754 21110 0 0011222222222676 66677888888
Q ss_pred EEEccCCceeeeeEeecccc-CCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecccc---CEEEEeeccCC
Q 001248 446 IYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA---PVYSVCPHHKE 521 (1114)
Q Consensus 446 iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~---~v~~~~~~~~~ 521 (1114)
..|..+|+..-.. .... ..+..-....++. +..++.++.+...|..+|+.......-.. .+..- .. ..
T Consensus 125 ~ld~~~G~~~W~~---~~~~~~~~~~~~v~~~~~---v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~-~~-~~ 196 (370)
T COG1520 125 ALDASTGTLVWSR---NVGGSPYYASPPVVGDGT---VYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGS-PA-IA 196 (370)
T ss_pred EEECCCCcEEEEE---ecCCCeEEecCcEEcCcE---EEEecCCCeEEEEEccCCcEEEEEecCCccccccccC-ce-ee
Confidence 8898888765532 2222 1122223333443 44444778888888888887766543221 11110 00 11
Q ss_pred CceEEEEEec--CCeEEEEEcCCCCCeeeecCCC----CeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 522 NIQFIFSTAL--DGKIKAWLYDNLGSRVDYEAPG----RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 522 ~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~----~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
+ ..++.+.. ++.+.-.|..++.......... ..+........+ .+ .-+ ..++.++.+
T Consensus 197 ~-~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~-~v--------------~v~-~~~~~~~~~ 259 (370)
T COG1520 197 S-GTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGG-PV--------------YVD-GGVYAGSYG 259 (370)
T ss_pred c-ceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCc-eE--------------EEC-CcEEEEecC
Confidence 2 24555544 4555555555544443321100 000000000000 00 001 124667778
Q ss_pred CeEEEEECCCcceEEEeccC
Q 001248 596 FSIKFWDMDSVQLLTSIDAD 615 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~ 615 (1114)
+.+...|..+++.+..+...
T Consensus 260 g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 260 GKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CeEEEEEcCCCceEEEEecc
Confidence 88999999999998888653
No 470
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.12 E-value=58 Score=36.74 Aligned_cols=158 Identities=9% Similarity=0.094 Sum_probs=85.1
Q ss_pred CCCCeeEEEEecCCCCEEEEeCCCCcce--eE-e-eccccCEEEEeec---cCCCceEEEEEecCCeEEEEEcCCCCCee
Q 001248 475 HPNKQLCVITCGDDKTIKVWDATNGAKQ--YI-F-EGHEAPVYSVCPH---HKENIQFIFSTALDGKIKAWLYDNLGSRV 547 (1114)
Q Consensus 475 ~d~~~~~l~s~~~d~~i~iwd~~~~~~~--~~-~-~~h~~~v~~~~~~---~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 547 (1114)
++++. .++.||..|.++|++...+... .. + ..-..+|..+..- ...+ ...++.=.-+.+.+|.+.......
T Consensus 34 ~~~~d-~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~-~~~LaVLhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 34 PSGSD-KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSE-DLQLAVLHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred CCCcc-EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCC-cceEEEecCCEEEEEEEEecCCCc
Confidence 44444 6899999999999998654311 11 1 1245778777632 2222 233333556677777763221110
Q ss_pred eecCCCCeeEEEEEecCCCeEEeeecccceeEEEecC----C-CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcC
Q 001248 548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT----T-KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP 622 (1114)
Q Consensus 548 ~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 622 (1114)
.++.. ..+. ..+..+-......+++-| . ..++.+-+.||.+.+|+-+.-.....+...- --.
T Consensus 112 ---~~g~~-~~L~------~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l---lPg 178 (418)
T PF14727_consen 112 ---EHGNQ-YQLE------LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL---LPG 178 (418)
T ss_pred ---ccCcE-EEEE------EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC---CCc
Confidence 00100 0000 001111111111122211 1 2567778999999999977655444444321 123
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 623 RIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 623 ~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
.+.|.+.-..+++++.+..+..|..
T Consensus 179 Pl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 179 PLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CeEEeecCCEEEEecCceeEEEecH
Confidence 5888998888999998888877754
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.82 E-value=5.8 Score=49.41 Aligned_cols=146 Identities=14% Similarity=0.192 Sum_probs=93.8
Q ss_pred eCCCcEEEEEcccceEEEeecccccCeeEEEEc--------CCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCC--
Q 001248 879 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--------HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR-- 948 (1114)
Q Consensus 879 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s--------~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~-- 948 (1114)
+.|..+.+|+++++.....+.+-+..|..|..- |.=++|...+.--.|.|+-+.-.+..... ..+..+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~--~~f~~~~~ 173 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL--SIFNTSFK 173 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc--ccccccee
Confidence 458899999999987788888877788777643 33344444444555777765433221111 111111
Q ss_pred -CCCCCCceEEEEccCCcEEEEEeCCeEEE--EEcCCC---c-eee-------------e-eec-CCCCcCeeEEEECCC
Q 001248 949 -TPTAQSDTRVQFHQDQIHFLVVHETQLAI--FETTKL---E-CVK-------------Q-WVP-RESSAPITHATFSCD 1006 (1114)
Q Consensus 949 -~~~~~~i~~v~fspdg~~l~~~~d~~i~i--wd~~~~---~-~~~-------------~-~~~-~~h~~~v~~l~~s~d 1006 (1114)
......|.++....+|+.+.+|.||.|.- |....+ + |.+ + +.. ..+..+|..+.+...
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 01124678888899999999998885542 222222 1 110 0 111 256779999999888
Q ss_pred CCEEEEEEcCCeEEEEEcCC
Q 001248 1007 SQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 1007 g~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
-..|.+-+..|+|.+||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 88899999999999999976
No 472
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.73 E-value=12 Score=40.90 Aligned_cols=104 Identities=5% Similarity=0.067 Sum_probs=69.2
Q ss_pred cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEc
Q 001248 901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 980 (1114)
Q Consensus 901 h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~ 980 (1114)
..++|.++.||+|++.||+--.|.+|.+++....+........ +......|...+|+.. .-+|.-.+..+.+|-.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~----ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v 139 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE----CKTKNANILGFCWTSS-TEIAFITDQGIEFYQV 139 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH----hccCcceeEEEEEecC-eeEEEEecCCeEEEEE
Confidence 4579999999999999999999999999998543322211111 1111235788889877 5566666666777765
Q ss_pred CCCc-eeeeeecCCCCcCeeEEEECCCCCEEE
Q 001248 981 TKLE-CVKQWVPRESSAPITHATFSCDSQLVY 1011 (1114)
Q Consensus 981 ~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1011 (1114)
...+ .++.. ..|+-.|.--.|.++-+.++
T Consensus 140 ~pekrslRlV--ks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 140 LPEKRSLRLV--KSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred chhhhhhhhh--hhcccCccEEEEccccceEe
Confidence 4332 22222 25677788888888887643
No 473
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.49 E-value=0.34 Score=52.82 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=86.2
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
-.+.-++..-.++|.-+|..+++.+-..+.+++||+.+..... +-.+-...-.-+.|++.+
T Consensus 69 le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-------------------LE~gg~~s~sll~wsKg~ 129 (615)
T KOG2247|consen 69 LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-------------------LESGGTSSKSLLAWSKGT 129 (615)
T ss_pred cccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-------------------HhccCcchHHHHhhccCC
Confidence 3334556667788888888777778888999999998754321 111222223338899999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
..++.+...|.+.|++..+.+... ....|...+.+++|.+.+. .+.++.|..+.+-.
T Consensus 130 ~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~---vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 130 PELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY---VILCDCDNTLSVTT 186 (615)
T ss_pred ccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce---eeecCcHHHHHHhh
Confidence 999999999999999988766543 3444999999999999886 67787777665544
No 474
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.76 E-value=62 Score=35.77 Aligned_cols=198 Identities=10% Similarity=0.087 Sum_probs=104.7
Q ss_pred CCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEc----CCCCE--EEEEe-CC---CcEEEEeCCCCcccccc
Q 001248 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNV--LVSSG-AD---SQLCVWSSDGWEKQKNR 940 (1114)
Q Consensus 871 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~--l~s~s-~D---~~v~iwd~~~~~~~~~~ 940 (1114)
...+++....++-+.+||+. |+.+..+. .++++.|..- -.|+. |+.++ ++ .+|++|.++..... ..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 44577777788899999987 44555553 2344444332 13433 44444 32 46999988742111 01
Q ss_pred ccccCCCC-CCCCCCceEEEEc--c-CCcEEEE--EeCCeEEEEEcC---CC----ceeeeeecCCCCcCeeEEEECCCC
Q 001248 941 FLQIPTGR-TPTAQSDTRVQFH--Q-DQIHFLV--VHETQLAIFETT---KL----ECVKQWVPRESSAPITHATFSCDS 1007 (1114)
Q Consensus 941 ~~~~~~~~-~~~~~~i~~v~fs--p-dg~~l~~--~~d~~i~iwd~~---~~----~~~~~~~~~~h~~~v~~l~~s~dg 1007 (1114)
.+...... ......+..+|+- + +|.+.+. ..+|.+..|.+. ++ +.++.|.. .+.+..+......
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDDET 219 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETTT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEeccc
Confidence 11100000 0111245677763 3 4655444 577877777664 33 45777764 4478889998888
Q ss_pred CEEEEEEcCCeEEEEEcCC-----CeeeEEeCCCcccCCCCCCCCccceEEEecCC-CCCeEEEEeCCCcEEEEeccCCC
Q 001248 1008 QLVYACFLDATVCVFSAAN-----LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1008 ~~l~s~s~Dg~I~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
.+|+.+-+|.-|+-|+.+- ++++..... ..+ ...+.-+++-..++ .+.+|+|.=.+++..||+.....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g-~~l-----~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADG-DGL-----VADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSS-SSB------S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccc-ccc-----ccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 8999999998888888752 233333221 111 22244445554442 23455555567899999987643
No 475
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.73 E-value=4.1 Score=39.83 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=25.1
Q ss_pred CCeeEEEEcCCC------CeEEEEeCCCeEEEEEccC
Q 001248 421 VSVNRVIWSPDG------SLFGVAYSRHIVQIYSYHG 451 (1114)
Q Consensus 421 ~~V~~l~~spdg------~~las~~~dg~i~iwd~~~ 451 (1114)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999943 3688889999999998664
No 476
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.57 E-value=22 Score=40.37 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=41.0
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
..-...|.|+|.|||+ +|++-...|.|++++..++.......+ .......-.+....|+|+|+-
T Consensus 27 ~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 3567789999999998 577654469999998765543211100 000111125678999999874
No 477
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.42 E-value=56 Score=34.97 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=81.0
Q ss_pred CEEEEeCCCCcceeEeec------cccCEEEEeeccCCC----ceEEEEEecCCeEEEEEcCCCCCeeeecCC-------
Q 001248 490 TIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKEN----IQFIFSTALDGKIKAWLYDNLGSRVDYEAP------- 552 (1114)
Q Consensus 490 ~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~----~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------- 552 (1114)
.|.+||+.+++.++++.- ..+....+.+...+. +-..++-+..+.|.++|+.+++....+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577889888888776642 235566666655332 223344444568999998875543322111
Q ss_pred ------------CCeeEEEEEec---CCCeEEe----------------------------------eecccceeEEEec
Q 001248 553 ------------GRWCTTMAYSA---DGTRTYQ----------------------------------GFRKRSLGVVQFD 583 (1114)
Q Consensus 553 ------------~~~v~~~~~s~---~g~~~~~----------------------------------~~~~~~v~~~~~~ 583 (1114)
...+..++.++ +++.++- |........+.++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 11255566655 5442221 1112244557788
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcc---eEEEeccCCC-CCCcCeEEEcC--CCCEEEEE
Q 001248 584 TTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGG-LPASPRIRFNK--DGCLLAVS 636 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~-~~~v~~~~~s~--d~~~l~~~ 636 (1114)
++|+.+++--..+.|..|+..+.- ....+..... ......+.+.+ +|.+.+..
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 889988888899999999987621 2222222222 34556777777 66554444
No 478
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.31 E-value=3.1 Score=49.23 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=73.3
Q ss_pred eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCC--CcccccccccCCCCCeeEEEEc--CCCCeEEEEeCCCeEEEE
Q 001248 372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGAC--SMPLQAALVKDPGVSVNRVIWS--PDGSLFGVAYSRHIVQIY 447 (1114)
Q Consensus 372 ~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~h~~~V~~l~~s--pdg~~las~~~dg~i~iw 447 (1114)
.+|+.+..||.|.+|.+++--...... .-+.... .......+...-...++.+++. ...++||++++...|.||
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 378889999999999874311000000 0000000 0000011122234489999998 888999999998889988
Q ss_pred EccCCceeeeeEeeccccCCeeEEEecCCCC----eeEEEEecCCCCEEEEeC
Q 001248 448 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK----QLCVITCGDDKTIKVWDA 496 (1114)
Q Consensus 448 d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~----~~~l~s~~~d~~i~iwd~ 496 (1114)
-............-..|...|-+|+|.++.. ...+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7665211111111113666789999987651 136788899999999887
No 479
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.30 E-value=62 Score=41.32 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=38.2
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.+.+...+.+-+|+.........+...++ ..+.++..++++..||.+.+||...+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 212 ILIGFNRGLVVIKDRASKYVQSAYLPNGQ-------LESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred cceeeeeeeeeehhcccccchhhcccccc-------cCccCCceEEEEEecCCEEeeecCCC
Confidence 44555667777777655444444433322 12788999999999999999999887
No 480
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=85.28 E-value=76 Score=36.36 Aligned_cols=71 Identities=10% Similarity=0.170 Sum_probs=47.0
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC
Q 001248 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1114)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 498 (1114)
...|.++.+...|. +-+|+.|| +..||..+++.++. .......+|.++.-+-.|+ +..|+.+| |++.+.+.
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql--~s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQL--ASPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEc--CCCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 34788888888885 45577777 78888888776642 1122335778888777787 56666554 66666443
No 481
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.24 E-value=7.9 Score=42.13 Aligned_cols=171 Identities=11% Similarity=0.063 Sum_probs=93.3
Q ss_pred ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE-Eee-ccccc----Cee-EEEEcCCCCEEEEEeC
Q 001248 850 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKL-KGHSK----RIT-GLAFSHALNVLVSSGA 922 (1114)
Q Consensus 850 ~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~-~~l-~~h~~----~V~-~l~~s~d~~~l~s~s~ 922 (1114)
+.++.+......+..+-..| ||+.|..-+. .++.++++.+...- +++ ....+ .|+ ++..-..|.-|..++.
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 33444555667788899999 8988876654 68889988764321 122 11111 222 2222335677888999
Q ss_pred CCcEEEE-eCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeE
Q 001248 923 DSQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITH 1000 (1114)
Q Consensus 923 D~~v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 1000 (1114)
||.|.-| |+..........++.+ .-....+..+.-..+-+-++. ...|++.++.....+.+-.-. --..+..
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f---~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~ 362 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNF---KLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQL 362 (733)
T ss_pred CCceeeeeeeecCCCCcceeeecc---ccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCcce
Confidence 9998877 4433222111111111 111111221111112223333 456677766654443322111 1235677
Q ss_pred EEECCCCCEEEEEEcCCeEEEEEcCCCee
Q 001248 1001 ATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1114)
Q Consensus 1001 l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~ 1029 (1114)
+++||++.+|++- ..|.|+++.+++...
T Consensus 363 ~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 363 VAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeeCcccchheee-cCCceEEEEecCCCC
Confidence 8999999999876 467899998876544
No 482
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=85.19 E-value=1.2e+02 Score=38.36 Aligned_cols=189 Identities=12% Similarity=0.083 Sum_probs=90.6
Q ss_pred CCCcEEEEEcccceEEEeeccc-ccCeeEEEEc---C------CCCEEEEEeC---------CCcEEEEeCCC-----Cc
Q 001248 880 DDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFS---H------ALNVLVSSGA---------DSQLCVWSSDG-----WE 935 (1114)
Q Consensus 880 ~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s---~------d~~~l~s~s~---------D~~v~iwd~~~-----~~ 935 (1114)
..+.|.+.+..+++.+..+.-. ..-|+++... . -..+|+.|.. .|.+.|+|+-. ++
T Consensus 1002 ~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1002 EQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred ccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence 3455666666666555433211 1123333321 1 1246776643 37899999743 21
Q ss_pred cccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEc-CCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE
Q 001248 936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET-TKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~-~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s 1014 (1114)
......++... .....+.|..++ .-+| +|+++...+|.+|++ +....+..-.. .-++.-....-=+.+|+.|.
T Consensus 1082 P~t~~KlKel~-~eE~KGtVsavc-eV~G-~l~~~~GqKI~v~~l~r~~~ligVaFi---D~~~yv~s~~~vknlIl~gD 1155 (1366)
T KOG1896|consen 1082 PFTKNKLKELY-IEEQKGTVSAVC-EVRG-HLLSSQGQKIIVRKLDRDSELIGVAFI---DLPLYVHSMKVVKNLILAGD 1155 (1366)
T ss_pred Ccccceeeeee-hhhcccceEEEE-Eecc-EEEEccCcEEEEEEeccCCcceeeEEe---ccceeEEehhhhhhheehhh
Confidence 11111111111 111123343332 3444 456666778999998 44444433222 11222222223345566665
Q ss_pred cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCe-EEEEeCCCcEEEEeccCCC
Q 001248 1015 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE-FALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1015 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~-l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
--..|.+..+...-..-.+- ..+ .....++++.|.-+.+++ +++++.|++|+++-..-..
T Consensus 1156 V~ksisfl~fqeep~rlsL~-----srd--~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1156 VMKSISFLGFQEEPYRLSLL-----SRD--FEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred hhhceEEEEEccCceEEEEe-----ecC--CchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCC
Confidence 55556655443221111111 111 122344477887754443 7788999999998876544
No 483
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.05 E-value=22 Score=32.31 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=67.6
Q ss_pred EccCCcEEEE-EeCCeEEEEEcCCCc--------eeeeeecCCCCcCeeEEEECC-----CCCEEEEEEcCCeEEEEEcC
Q 001248 960 FHQDQIHFLV-VHETQLAIFETTKLE--------CVKQWVPRESSAPITHATFSC-----DSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 960 fspdg~~l~~-~~d~~i~iwd~~~~~--------~~~~~~~~~h~~~v~~l~~s~-----dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
|....-.|++ +.-++|.|++..... .++.+.. ...|++|+-.+ +...|+.|+ ...+..||+.
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3333445555 567788888765332 3333432 56777776433 334566665 6789999999
Q ss_pred CCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCccc
Q 001248 1026 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1085 (1114)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~ 1085 (1114)
...-+..-+ +++| ++.+.+.-..+...-|+..+.++.|.=+|....|.-|.
T Consensus 82 ~N~d~Fyke----~~DG-----vn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFYKE----VPDG-----VNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhhhh----Cccc-----eeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 887764333 6666 66554432222233455555688888888776665554
No 484
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.17 E-value=4.2 Score=41.39 Aligned_cols=76 Identities=7% Similarity=0.061 Sum_probs=52.4
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCcccccc--ccccCCCC----CCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCC
Q 001248 910 FSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGR----TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL 983 (1114)
Q Consensus 910 ~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~----~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~ 983 (1114)
+..++.+|++.+.+|.+++||+.+.+..... ........ ......|..+.++.+|.-+++-.+|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4456889999999999999999987653322 11111110 01224688899999999988877888899987644
Q ss_pred ce
Q 001248 984 EC 985 (1114)
Q Consensus 984 ~~ 985 (1114)
.-
T Consensus 98 ~W 99 (219)
T PF07569_consen 98 CW 99 (219)
T ss_pred ee
Confidence 43
No 485
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.03 E-value=5.5 Score=40.54 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=51.8
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCccccccccc-------CCCCCeeEEEEcCCCCeEEE
Q 001248 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-------DPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 365 ~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~las 437 (1114)
.+..++.+ |++-+.+|.+++||+.+++..... ..+. .++. .....|..+.++.+|.-|++
T Consensus 17 ~l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~-----------pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ 83 (219)
T PF07569_consen 17 FLECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSIA-----------PLLNSSPVSDKSSSPNITSCSLTSNGVPIVT 83 (219)
T ss_pred EEEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccHH-----------HHhcccccccCCCCCcEEEEEEcCCCCEEEE
Confidence 35567887 666788999999999998876531 1111 1122 45668999999988888777
Q ss_pred EeCCCeEEEEEccCC
Q 001248 438 AYSRHIVQIYSYHGG 452 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~ 452 (1114)
-+ +|....|+.+-+
T Consensus 84 ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 84 LS-NGDSYSYSPDLG 97 (219)
T ss_pred Ee-CCCEEEeccccc
Confidence 65 477888887643
No 486
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.96 E-value=85 Score=38.82 Aligned_cols=249 Identities=11% Similarity=0.051 Sum_probs=115.2
Q ss_pred EEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEE
Q 001248 757 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 836 (1114)
Q Consensus 757 l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 836 (1114)
.++..-|+.+.+|+.+|.+.+|.+........... .. ...... ..-+..+|..+...+.-.++.+-
T Consensus 20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~---------~~~~~~----~~~~kk~i~~l~~~~~~~~ll~l 85 (877)
T KOG2063|consen 20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VT---------ETVKFE----KEFSKKPINKLLVCASLELLLIL 85 (877)
T ss_pred hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hc---------chhHHh----hhhccchhHHHhhcchhcchhee
Confidence 34455678899999999999998865322111000 00 000000 01135667777777777788888
Q ss_pred eCCeEEEEEcCCCccccccCCCCCCeEEEEEe--cCC-C--cEEEEEe-CCC-cEEEEEcccceEEEeecccccCeeEEE
Q 001248 837 SGGKISLFNMMTFKTMATFMPPPPAATFLAFH--PQD-N--NIIAIGM-DDS-SIQIYNVRVDEVKSKLKGHSKRITGLA 909 (1114)
Q Consensus 837 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s--p~d-~--~~la~g~-~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~ 909 (1114)
+|+.|.++++.+.+...... +-..+...+.. +.. + .+.+..+ ... ....|+-..+..+..--+-.....+++
T Consensus 86 ~dsqi~~~~l~~~~~~~~~~-~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 164 (877)
T KOG2063|consen 86 SDSQIAVHKLPELEPVPSGT-RLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA 164 (877)
T ss_pred cCCcceeeecCccccccccc-ccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence 89999999987766521111 11111111110 001 1 1222222 111 122233222222221111222223333
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeee-
Q 001248 910 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ- 988 (1114)
Q Consensus 910 ~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~- 988 (1114)
| .+..+.++-.+....+|.-.++......+...... ..-..+.--.++..++.+.|+...+-|.......+.
T Consensus 165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~-----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~ 237 (877)
T KOG2063|consen 165 W--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNE-----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT 237 (877)
T ss_pred c--cceeEEEeecceeEEEecCCCccccceeeeccccc-----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence 3 34445555444445555544432211111111100 111334445566566667676666666442221111
Q ss_pred eecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEe
Q 001248 989 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 989 ~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1033 (1114)
+. -+....++.+ +.-|+++-+ ++.|.||+..++.++..+
T Consensus 238 l~---ws~~P~~v~~--~~PYlIa~~-~~~veI~s~~~~qlvQSI 276 (877)
T KOG2063|consen 238 LV---WSEVPLSVVV--ESPYLIALL-DRSVEIRSKLDGQLVQSI 276 (877)
T ss_pred eE---ecccchhhcc--cCceEEEEc-cccEEEEeccCHHHhhcc
Confidence 10 0112222222 455666554 669999999999888776
No 487
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=83.88 E-value=72 Score=34.96 Aligned_cols=66 Identities=8% Similarity=-0.065 Sum_probs=34.7
Q ss_pred CCcEEEEEe------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC----eEEEEEcCCCee
Q 001248 963 DQIHFLVVH------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAANLKL 1029 (1114)
Q Consensus 963 dg~~l~~~~------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg----~I~vwd~~~~~~ 1029 (1114)
+++..+.++ ...+..||+.+.+-...-.... .......+...++++.+.|+.++ .+.+||..+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 555555542 1358888988765432211111 11222233344677777777654 356788887654
No 488
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.48 E-value=58 Score=33.55 Aligned_cols=240 Identities=14% Similarity=0.158 Sum_probs=139.3
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
........|+-.|||. +-++++..|.|---|..+|+.... -.+....-..|..-|||..-
T Consensus 59 p~G~ap~dvapapdG~-VWft~qg~gaiGhLdP~tGev~~y-------------------pLg~Ga~Phgiv~gpdg~~W 118 (353)
T COG4257 59 PNGSAPFDVAPAPDGA-VWFTAQGTGAIGHLDPATGEVETY-------------------PLGSGASPHGIVVGPDGSAW 118 (353)
T ss_pred CCCCCccccccCCCCc-eEEecCccccceecCCCCCceEEE-------------------ecCCCCCCceEEECCCCCee
Confidence 3556678899999998 578888888888888888887642 23344456678888988876
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC---------CCCEEEEeCCCCcceeEee
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD---------DKTIKVWDATNGAKQYIFE 506 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~ 506 (1114)
++-+.. -|.-.|-++.+..+-......-........|.++|. +-+++.. .+.|++|+.-.|.
T Consensus 119 itd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~--lWFt~q~G~yGrLdPa~~~i~vfpaPqG~------ 189 (353)
T COG4257 119 ITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGN--LWFTGQIGAYGRLDPARNVISVFPAPQGG------ 189 (353)
T ss_pred EecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCcc--EEEeeccccceecCcccCceeeeccCCCC------
Confidence 654433 466666666654433223333445678899999998 6666642 2345566544332
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
.-..||. .+||..-++.-.+..|-..|..+..... +.. |+.. .....-+-.+|.+
T Consensus 190 ----gpyGi~a--tpdGsvwyaslagnaiaridp~~~~aev-~p~-----------P~~~-------~~gsRriwsdpig 244 (353)
T COG4257 190 ----GPYGICA--TPDGSVWYASLAGNAIARIDPFAGHAEV-VPQ-----------PNAL-------KAGSRRIWSDPIG 244 (353)
T ss_pred ----CCcceEE--CCCCcEEEEeccccceEEcccccCCcce-ecC-----------CCcc-------cccccccccCccC
Confidence 2334453 4566666666566666655554432111 111 1110 0011112233444
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
..-++....+.++.+|..... -..+...+....-.++.....++...+-...|.|.-+|.++.
T Consensus 245 ~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 245 RAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred cEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 456666667788888876544 334444443444566777766766665555566666665554
No 489
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=83.46 E-value=1.4e+02 Score=37.93 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=17.7
Q ss_pred cccceEEEEEccCcceeeecccCc
Q 001248 750 RATKISRLIFTNSGNAILALASNA 773 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg 773 (1114)
+-..+.+++++|||..+++-..+-
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~ 683 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNS 683 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCch
Confidence 556778999999998776655443
No 490
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.52 E-value=14 Score=46.35 Aligned_cols=171 Identities=13% Similarity=0.201 Sum_probs=101.1
Q ss_pred CCCCCcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCe
Q 001248 344 PEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV 423 (1114)
Q Consensus 344 ~~~~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V 423 (1114)
...+|.++.....|...-+.+-+-|.=.+.-+ +.|+.+.+|+++++..... +.+-...|
T Consensus 64 v~~IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtI 122 (1311)
T KOG1900|consen 64 VVNIPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTI 122 (1311)
T ss_pred cccCCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhh
Confidence 34567777777776666566666665443233 4689999999998655442 33444455
Q ss_pred eEEEE--------cCCCCeEEEEeCCCeEEEEEccCCceee------eeEeeccccCCeeEEEecCCCCeeEEEEecCCC
Q 001248 424 NRVIW--------SPDGSLFGVAYSRHIVQIYSYHGGDEVR------QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1114)
Q Consensus 424 ~~l~~--------spdg~~las~~~dg~i~iwd~~~~~~~~------~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 489 (1114)
..|.. -|.=++|...+.--.|.|+-+.-.+... ...++.-....|+|+....+|+ ++++ |.||
T Consensus 123 l~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~-G~dg 199 (1311)
T KOG1900|consen 123 LKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFA-GRDG 199 (1311)
T ss_pred eeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEe-ecCC
Confidence 55542 3344455544444556666554222111 1112222345789999888888 5555 4555
Q ss_pred CEEEEeCC----CC---c-c----------------eeEee-ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC
Q 001248 490 TIKVWDAT----NG---A-K----------------QYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1114)
Q Consensus 490 ~i~iwd~~----~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 542 (1114)
.+|.+. +| + + +-.+. .+..+|..+.+..+. ..+++-+..|+|.+||+..
T Consensus 200 --~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 200 --NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred --CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccC
Confidence 445432 11 1 1 01122 567789988875444 6899999999999999976
No 491
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.30 E-value=24 Score=39.50 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=62.0
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEE---------cCCCe--eeEEeCC---CcccCCCCCCCCccceEEEecCCC-
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFS---------AANLK--LRCRINP---SAYLPAGVSSSNVHPLVIAAHPQE- 1059 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd---------~~~~~--~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~d- 1059 (1114)
.-.|..+..++.|..++.++.+|.+..+= +.+|+ ..|+..+ ..|.. +..+...-++|+|+.
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts----s~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS----STSLTLKQAAWHPSSI 178 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc----CCceeeeeccccCCcc
Confidence 34578888999999999998898655542 23443 2333221 11222 122555678999953
Q ss_pred -CCeEEEEeCCCcEEEEeccCCCCcccCCCCC
Q 001248 1060 -PNEFALGLSDGGVHVFEPLESEGKWGVPPPV 1090 (1114)
Q Consensus 1060 -~~~l~s~~~Dg~v~vW~i~~~~~~~~~~~~~ 1090 (1114)
...|+.-+.|+.+++++.+...+.|..|.|.
T Consensus 179 ~D~hL~iL~sdnviRiy~lS~~telylqpgep 210 (741)
T KOG4460|consen 179 LDPHLVLLTSDNVIRIYSLSEPTELYLQPGEP 210 (741)
T ss_pred CCceEEEEecCcEEEEEecCCcchhhccCCCc
Confidence 4567888889999999999988887776553
No 492
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.51 E-value=92 Score=34.49 Aligned_cols=198 Identities=17% Similarity=0.284 Sum_probs=102.2
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEec----CCCCeeEEEEec-CC---CCEEEEeCC--CC
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS----HPNKQLCVITCG-DD---KTIKVWDAT--NG 499 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s----~d~~~~~l~s~~-~d---~~i~iwd~~--~~ 499 (1114)
|...+++....++-+.+||++... +.. +. .+.++.+..- -+|+..-|+.++ .+ .+|++|.+. ++
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~-lq~---~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKE-LQS---LP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-E-EEE---E---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCCCcE-EEe---ec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence 456677777788889999998653 332 22 2333433321 134432233333 22 469999775 33
Q ss_pred cceeEeec-------cccCEEEEeeccCC-Cc-eEEEEEecCCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEE
Q 001248 500 AKQYIFEG-------HEAPVYSVCPHHKE-NI-QFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 500 ~~~~~~~~-------h~~~v~~~~~~~~~-~~-~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
. +..+.. -...+..+|+..++ +| -+++....+|.+..|.+.... ..... ..|..+..
T Consensus 140 ~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~----~lVR~f~~-------- 206 (381)
T PF02333_consen 140 E-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA----TLVREFKV-------- 206 (381)
T ss_dssp E-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE----EEEEEEE---------
T ss_pred c-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee----EEEEEecC--------
Confidence 3 333321 12346778875443 33 467777889999988775321 11100 01222211
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC-----cceEEEeccCCCCCCcCeEEEcC--CC--CEEEEEeCCC
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-----VQLLTSIDADGGLPASPRIRFNK--DG--CLLAVSTNDN 640 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s~--d~--~~l~~~~~dg 640 (1114)
...+-.+..+....+|+.+-++.-|+-|+.+- ++.+.......-...+-.+++-. ++ .+|++.-.++
T Consensus 207 ----~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~ 282 (381)
T PF02333_consen 207 ----GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN 282 (381)
T ss_dssp ----SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred ----CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence 11334455556666788888888888888752 22232333222234566666643 33 3444555577
Q ss_pred cEEEEEccCC
Q 001248 641 GIKILATSDG 650 (1114)
Q Consensus 641 ~i~iwd~~~~ 650 (1114)
+..+|+....
T Consensus 283 sf~Vy~r~~~ 292 (381)
T PF02333_consen 283 SFAVYDREGP 292 (381)
T ss_dssp EEEEEESSTT
T ss_pred eEEEEecCCC
Confidence 8999997754
No 493
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=81.49 E-value=87 Score=38.92 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=53.0
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEe----CCCc----ccCCCCCCC-CccceEEEecCCCCCeEEE
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI----NPSA----YLPAGVSSS-NVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~----~~~~----~~~~~~~~~-~v~~~~~~~~~~d~~~l~s 1065 (1114)
.+.|.+++...-+.+++.+..||+|.++|-.+.+.+... .... ....|-+-. .-.++.++|||. +..++.
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt-~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPT-MCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcc-cceEEE
Confidence 567888988888889999999999999999888766544 1111 111111100 012346889994 677888
Q ss_pred EeCCCcEE
Q 001248 1066 GLSDGGVH 1073 (1114)
Q Consensus 1066 ~~~Dg~v~ 1073 (1114)
-..||.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888865
No 494
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.25 E-value=1e+02 Score=34.85 Aligned_cols=73 Identities=11% Similarity=0.028 Sum_probs=49.3
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEE---------cccceEEEee-----------cccccCeeEEEEcCCC---CEE
Q 001248 861 AATFLAFHPQDNNIIAIGMDDSSIQIYN---------VRVDEVKSKL-----------KGHSKRITGLAFSHAL---NVL 917 (1114)
Q Consensus 861 ~i~~l~~sp~d~~~la~g~~dg~v~iwd---------~~~~~~~~~l-----------~~h~~~V~~l~~s~d~---~~l 917 (1114)
.|..+..++ .|..+|..+.+|.+.++= ++.|+..... ....-.+..++|+|+. ..|
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 466778888 888888888898766543 1233222111 1112245678899975 678
Q ss_pred EEEeCCCcEEEEeCCCC
Q 001248 918 VSSGADSQLCVWSSDGW 934 (1114)
Q Consensus 918 ~s~s~D~~v~iwd~~~~ 934 (1114)
..-+.|.++++||+...
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 88889999999999873
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.05 E-value=43 Score=35.52 Aligned_cols=92 Identities=10% Similarity=0.165 Sum_probs=57.4
Q ss_pred CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe------CCCeEEEEEccCCce
Q 001248 381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY------SRHIVQIYSYHGGDE 454 (1114)
Q Consensus 381 g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~------~dg~i~iwd~~~~~~ 454 (1114)
..|++||+.+.+-.. .-.+-.+.|++|.|..+.++++.|. ....+..||.++..-
T Consensus 16 ~~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CEEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 358999988765432 2334567899999997777777774 345688999887642
Q ss_pred eeeeEeecc-----ccCCeeEEEecCCCCeeEEEEec-CCC--CEEEEe
Q 001248 455 VRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWD 495 (1114)
Q Consensus 455 ~~~~~~l~~-----h~~~V~~v~~s~d~~~~~l~s~~-~d~--~i~iwd 495 (1114)
. .+.+ -.++|..+.+..++..-+.+.|. .++ .|..||
T Consensus 77 ~----~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 77 S----SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred e----ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 2 2333 24688888885433321444443 333 366676
No 496
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=81.02 E-value=75 Score=33.14 Aligned_cols=200 Identities=15% Similarity=0.089 Sum_probs=101.3
Q ss_pred cCCC-CCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 417 KDPG-VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 417 ~~h~-~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
-+|- ..|..+....+-.++..|-.--..-+|+.......-....+ .-.+-+..+.++.+ +...+..+.-++|.|
T Consensus 38 vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i-~~~~l~~Dv~vse~----yvyvad~ssGL~IvD 112 (370)
T COG5276 38 VGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVI-NARDLFADVRVSEE----YVYVADWSSGLRIVD 112 (370)
T ss_pred eeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEE-ehhhhhheeEeccc----EEEEEcCCCceEEEe
Confidence 3444 46777766654444443321111234444321111111111 22345677888754 456666777899999
Q ss_pred CCCCcceeEeec--cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCee---eecCCCCeeEEEEEecCCCeEEe
Q 001248 496 ATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---DYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 496 ~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
+.+...-..+.. -.+--.++. -+ |++.+.+..|.-+.+.|+.+..... .+......-..+++
T Consensus 113 IS~P~sP~~~~~lnt~gyaygv~--vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~I--------- 179 (370)
T COG5276 113 ISTPDSPTLIGFLNTDGYAYGVY--VS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAI--------- 179 (370)
T ss_pred ccCCCCcceeccccCCceEEEEE--ec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEE---------
Confidence 987654332211 112223333 22 3678888877778888887654433 11112211122222
Q ss_pred eecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.|++-..+..|+-+.+-|+.....-..+........+.++..+++-.+++... .-+.+-|..+.
T Consensus 180 --------------SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ 243 (370)
T COG5276 180 --------------SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGP 243 (370)
T ss_pred --------------ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCC
Confidence 23455666778888999887654322222111112467777777666655543 34556665544
No 497
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=80.91 E-value=6.7 Score=34.38 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=50.6
Q ss_pred cchHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc-H-HHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHH
Q 001248 3 SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN-M-KYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1114)
Q Consensus 3 ~~~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~-~-~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (1114)
.+..|=...|.+|++..| +.+.+++|.||++. + ..|-+ .++.|....... ..-...+..
T Consensus 33 ~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPTvR~rLd~---------ii~~lg~~~~~~-------~~~~~~~~~ 93 (113)
T PF09862_consen 33 RLSPEQLEFIKLFIKNRG---NLKEMEKELGISYPTVRNRLDK---------IIEKLGYEEDEE-------EEEEDERKE 93 (113)
T ss_pred cCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcHHHHHHHHH---------HHHHhCCCCCcc-------cccchhHHH
Confidence 455667788899999999 88999999999996 2 22222 222222211111 112335788
Q ss_pred HHHHHhcCC--HHHHHHHHH
Q 001248 81 YLEALDKHD--RAKAVEILV 98 (1114)
Q Consensus 81 ~lell~~~~--~~~A~~~l~ 98 (1114)
.|+.|+.|+ .++|+..|+
T Consensus 94 IL~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 94 ILDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHHHcCCCCHHHHHHHhC
Confidence 999999998 577887764
No 498
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=80.46 E-value=92 Score=37.07 Aligned_cols=128 Identities=12% Similarity=0.170 Sum_probs=73.4
Q ss_pred ceEEEEccCCcEEEE-EeCC-----eEEEEEcCCCceeeeeec-CCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCC
Q 001248 955 DTRVQFHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 955 i~~v~fspdg~~l~~-~~d~-----~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
-..+.|-|.|..+++ +.|| .|..+.... -.-..+.. .+-...+..++|.-....++.+ ....|.+|-..+.
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG-LrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNy 326 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG-LRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNY 326 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCC-cccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccce
Confidence 356899999999999 5554 355555432 22222211 1224456777787666666644 4678999987665
Q ss_pred eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcccCCCCCCCCCC
Q 001248 1028 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGST 1095 (1114)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~~~~~~~~~ 1095 (1114)
.-- ++...+.|. +. -+.|+|...+.|...+ .+.|..-........-...-|+++|.+
T Consensus 327 hWY--LK~e~~ip~------~s--~vkwhpe~~nTl~f~d-~~~I~~V~f~~k~~~~~s~~p~d~g~~ 383 (1243)
T COG5290 327 HWY--LKVERQIPG------IS--YVKWHPEEKNTLLFRD-GERILRVFFSEKKTHHGSEYPFDNGTS 383 (1243)
T ss_pred EEE--EEEeecCCC------cc--eeeeccccCcEEEEec-CCeEEEEEeehhhhcCCcccCccCCce
Confidence 432 222233442 33 5889997666666543 344444444444433444567777765
No 499
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.78 E-value=11 Score=36.88 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=26.2
Q ss_pred cCeeEEEEcCCC------CEEEEEeCCCcEEEEeCCC
Q 001248 903 KRITGLAFSHAL------NVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 903 ~~V~~l~~s~d~------~~l~s~s~D~~v~iwd~~~ 933 (1114)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999954 4799999999999998765
No 500
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=79.53 E-value=1.4e+02 Score=35.51 Aligned_cols=238 Identities=11% Similarity=0.164 Sum_probs=123.6
Q ss_pred EEeeCCCEEEEEe-CCeEEEEEcC-CCccccccCCC-CCCeEEEEEecCC--CcEEEEEeCCCc-EEEEEcccc------
Q 001248 825 ALSKNDSYVMSAS-GGKISLFNMM-TFKTMATFMPP-PPAATFLAFHPQD--NNIIAIGMDDSS-IQIYNVRVD------ 892 (1114)
Q Consensus 825 ~~s~d~~~l~~~~-dg~i~iwd~~-~~~~~~~~~~~-~~~i~~l~~sp~d--~~~la~g~~dg~-v~iwd~~~~------ 892 (1114)
.++|+...+-.|= ...|.-|=+. |.+.+..+.-. ...|.|+.....+ ..+.++|-.++. .++-.+..+
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~ 113 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTED 113 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccc
Confidence 5667777777665 4445555443 55555554432 3457777765322 345666644443 454444332
Q ss_pred -----e--EEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC--
Q 001248 893 -----E--VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-- 963 (1114)
Q Consensus 893 -----~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd-- 963 (1114)
+ ....++ -.+.|-+|.|..+++.+++.-..|.|.+||.+.+.......+.. .+.. ..+.. .|-++
T Consensus 114 ~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~--~~~~--~v~ys-~fv~~~~ 187 (670)
T PF10395_consen 114 GTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKL--KSSI--NVSYS-KFVNDFE 187 (670)
T ss_pred cccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccc--cccc--ceehh-hhhcccc
Confidence 0 111222 25678899999999999999999999999994332221111111 1110 01111 22222
Q ss_pred ----CcEEEE-Ee-C-C--eEEEEEc--CCCceeeeee---cCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee
Q 001248 964 ----QIHFLV-VH-E-T--QLAIFET--TKLECVKQWV---PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1114)
Q Consensus 964 ----g~~l~~-~~-d-~--~i~iwd~--~~~~~~~~~~---~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~ 1029 (1114)
..++.+ +. + . ..+++.+ .+..+ ..+. ...+...=..+++. +|++..- .++.|.+|++...+.
T Consensus 188 ~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~-~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~ 263 (670)
T PF10395_consen 188 LENGKDLLLTVSQLSNSKLSYKLISLSNESSSI-FELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQI 263 (670)
T ss_pred cccCCceEEEEEEcCCCcEEEEEEEeccCCcce-EEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceE
Confidence 334444 33 2 2 4667776 22222 1211 11111122223333 5554333 688999999999999
Q ss_pred eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1030 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
..++.....+.... ..++++. |...++++.+ .+++|++.|+.=
T Consensus 264 ~~tI~l~~ii~~~~----~~~vSl~--~~s~nRvLLs-~~nkIyLld~~~ 306 (670)
T PF10395_consen 264 QKTISLPSIIDKES----DDLVSLK--PPSPNRVLLS-VNNKIYLLDLKF 306 (670)
T ss_pred EEEEEechhhcccc----ccceEee--cCCCCeEEEE-cCCEEEEEeehh
Confidence 98888443333221 1222333 2233444433 389999999854
Done!