Query 001248
Match_columns 1114
No_of_seqs 825 out of 4693
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 18:29:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 1.9E-66 6.4E-71 629.9 71.1 565 353-1076 11-577 (577)
2 1nr0_A Actin interacting prote 100.0 4.8E-65 1.6E-69 617.6 67.8 577 357-1078 17-610 (611)
3 1nr0_A Actin interacting prote 100.0 3.2E-61 1.1E-65 584.0 66.6 540 353-1025 54-610 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 2.1E-60 7.1E-65 576.8 66.2 551 297-1023 24-577 (577)
5 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-60 3.8E-65 632.7 64.0 597 353-1079 610-1249(1249)
6 1pgu_A Actin interacting prote 100.0 5E-58 1.7E-62 561.0 59.5 562 356-1080 16-615 (615)
7 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-56 3.8E-61 562.6 58.1 621 352-1089 11-795 (902)
8 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-56 6.6E-61 592.2 61.1 568 415-1082 610-1210(1249)
9 1pgu_A Actin interacting prote 100.0 7E-55 2.4E-59 533.2 60.7 522 351-1026 56-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 5.6E-52 1.9E-56 520.0 58.9 611 298-1067 26-817 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 1.8E-45 6.3E-50 465.3 59.0 464 355-1022 10-501 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-43 3.9E-48 448.9 50.6 467 415-1076 8-502 (814)
13 1vyh_C Platelet-activating fac 100.0 3.4E-43 1.2E-47 403.6 40.0 306 354-780 104-409 (410)
14 1vyh_C Platelet-activating fac 100.0 3.1E-39 1.1E-43 370.6 38.8 306 416-932 104-410 (410)
15 3ow8_A WD repeat-containing pr 100.0 1.4E-38 4.8E-43 351.6 40.6 288 416-932 28-320 (321)
16 2pbi_B Guanine nucleotide-bind 100.0 4.5E-38 1.6E-42 353.0 42.8 295 351-779 56-354 (354)
17 1got_B GT-beta; complex (GTP-b 100.0 5.6E-38 1.9E-42 350.8 42.6 292 351-779 47-340 (340)
18 1r5m_A SIR4-interacting protei 100.0 5.8E-38 2E-42 363.9 39.8 339 417-932 42-424 (425)
19 3ow8_A WD repeat-containing pr 100.0 1.8E-37 6E-42 342.8 40.3 288 354-780 28-319 (321)
20 3iz6_a 40S ribosomal protein R 100.0 3.2E-38 1.1E-42 358.6 34.9 293 415-934 61-376 (380)
21 3frx_A Guanine nucleotide-bind 100.0 4.1E-37 1.4E-41 340.1 41.2 302 353-782 11-317 (319)
22 1got_B GT-beta; complex (GTP-b 100.0 3E-37 1E-41 344.8 40.4 286 458-930 48-340 (340)
23 4g56_B MGC81050 protein; prote 100.0 8.9E-38 3.1E-42 350.9 35.7 319 716-1081 18-345 (357)
24 2ynn_A Coatomer subunit beta'; 100.0 6E-37 2.1E-41 336.4 40.6 251 353-650 7-260 (304)
25 4gqb_B Methylosome protein 50; 100.0 1E-37 3.5E-42 346.9 33.9 295 750-1081 29-333 (344)
26 3fm0_A Protein CIAO1; WDR39,SG 100.0 6E-37 2.1E-41 343.0 38.6 208 415-649 10-225 (345)
27 4g56_B MGC81050 protein; prote 100.0 1.2E-37 4E-42 349.9 31.8 322 362-892 9-344 (357)
28 3iz6_a 40S ribosomal protein R 100.0 3.4E-37 1.2E-41 350.1 35.8 302 351-782 58-375 (380)
29 2ynn_A Coatomer subunit beta'; 100.0 1.3E-36 4.5E-41 333.6 39.4 289 459-933 7-302 (304)
30 1r5m_A SIR4-interacting protei 100.0 9.8E-37 3.4E-41 353.5 39.7 359 351-890 38-424 (425)
31 2pm9_A Protein WEB1, protein t 100.0 2.3E-38 7.7E-43 366.2 24.9 332 421-933 13-414 (416)
32 3frx_A Guanine nucleotide-bind 100.0 5.2E-36 1.8E-40 331.3 42.0 214 415-650 12-228 (319)
33 2pbi_B Guanine nucleotide-bind 100.0 4.4E-36 1.5E-40 336.9 41.0 289 415-888 59-354 (354)
34 4gqb_B Methylosome protein 50; 100.0 9.8E-37 3.3E-41 339.1 34.6 258 356-650 28-290 (344)
35 2xzm_R RACK1; ribosome, transl 100.0 9.6E-36 3.3E-40 333.2 40.5 216 415-649 16-244 (343)
36 3vl1_A 26S proteasome regulato 100.0 2.3E-36 7.7E-41 349.9 36.6 355 359-848 57-419 (420)
37 2pm9_A Protein WEB1, protein t 100.0 1.8E-37 6E-42 358.7 26.0 367 356-892 10-415 (416)
38 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.8E-36 1.3E-40 336.5 36.0 299 749-1082 13-338 (345)
39 1k32_A Tricorn protease; prote 100.0 1.1E-34 3.8E-39 373.6 53.3 526 357-1081 13-639 (1045)
40 1erj_A Transcriptional repress 100.0 2.3E-35 7.8E-40 336.7 41.2 303 418-933 62-389 (393)
41 1gxr_A ESG1, transducin-like e 100.0 1.2E-35 4.1E-40 332.4 37.9 324 357-890 8-336 (337)
42 4ery_A WD repeat-containing pr 100.0 7.2E-35 2.5E-39 321.9 43.4 250 353-650 18-269 (312)
43 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-36 4.3E-41 355.1 30.1 355 348-933 123-517 (524)
44 4ery_A WD repeat-containing pr 100.0 7.4E-35 2.5E-39 321.8 41.9 291 415-890 18-311 (312)
45 1gxr_A ESG1, transducin-like e 100.0 2E-35 6.8E-40 330.6 36.7 320 419-931 8-335 (337)
46 1erj_A Transcriptional repress 100.0 1E-34 3.4E-39 331.4 40.4 275 350-650 56-342 (393)
47 3vl1_A 26S proteasome regulato 100.0 3.3E-35 1.1E-39 340.1 36.5 346 421-933 57-419 (420)
48 3gre_A Serine/threonine-protei 100.0 5.6E-36 1.9E-40 348.4 27.9 373 365-930 34-437 (437)
49 2xzm_R RACK1; ribosome, transl 100.0 1.5E-34 5.2E-39 323.5 38.0 290 458-934 14-341 (343)
50 2hes_X YDR267CP; beta-propelle 100.0 2E-34 7E-39 320.2 38.7 252 354-650 10-281 (330)
51 3v7d_B Cell division control p 100.0 2.6E-34 9E-39 337.2 41.5 342 415-931 116-461 (464)
52 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.6E-34 1.6E-38 332.7 42.4 317 415-933 113-442 (445)
53 2j04_B YDR362CP, TAU91; beta p 100.0 5.3E-36 1.8E-40 349.8 25.8 357 419-1026 132-517 (524)
54 4aow_A Guanine nucleotide-bind 100.0 6.2E-34 2.1E-38 319.0 40.4 307 351-783 30-338 (340)
55 1k32_A Tricorn protease; prote 100.0 3.5E-33 1.2E-37 359.7 52.9 491 351-1028 45-639 (1045)
56 2hes_X YDR267CP; beta-propelle 100.0 1.6E-34 5.4E-39 321.1 34.8 291 749-1079 12-328 (330)
57 4aow_A Guanine nucleotide-bind 100.0 8.1E-34 2.8E-38 318.0 40.4 211 415-650 33-247 (340)
58 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.4E-33 8.2E-38 326.7 43.8 319 353-891 113-442 (445)
59 3gre_A Serine/threonine-protei 100.0 2.1E-35 7.2E-40 343.5 24.5 386 427-1023 34-437 (437)
60 3v7d_B Cell division control p 100.0 4.6E-33 1.6E-37 326.6 44.4 318 353-888 116-460 (464)
61 3zwl_B Eukaryotic translation 100.0 1.8E-33 6.2E-38 319.1 38.0 302 415-935 27-348 (369)
62 3dm0_A Maltose-binding peripla 100.0 1.8E-33 6.3E-38 346.8 38.7 259 354-657 378-639 (694)
63 3k26_A Polycomb protein EED; W 100.0 2.2E-34 7.5E-39 326.3 25.5 318 415-933 13-366 (366)
64 4a11_B DNA excision repair pro 100.0 4.5E-33 1.6E-37 320.7 35.0 356 380-933 22-405 (408)
65 3i2n_A WD repeat-containing pr 100.0 7E-33 2.4E-37 312.7 35.0 294 415-934 13-354 (357)
66 1sq9_A Antiviral protein SKI8; 100.0 9.9E-33 3.4E-37 316.6 36.7 300 458-934 9-396 (397)
67 4e54_B DNA damage-binding prot 100.0 4.8E-33 1.6E-37 322.5 33.1 240 354-636 115-362 (435)
68 3zwl_B Eukaryotic translation 100.0 9.4E-32 3.2E-36 305.0 42.6 306 349-783 23-347 (369)
69 4a11_B DNA excision repair pro 100.0 6.2E-33 2.1E-37 319.6 33.2 362 594-1079 21-405 (408)
70 3dm0_A Maltose-binding peripla 100.0 2.2E-32 7.6E-37 337.1 39.1 211 415-650 377-593 (694)
71 4e54_B DNA damage-binding prot 100.0 1E-32 3.4E-37 319.7 32.6 294 576-1030 121-434 (435)
72 3ei3_B DNA damage-binding prot 100.0 1.5E-32 5.1E-37 313.2 33.2 308 600-1026 57-382 (383)
73 2pm7_B Protein transport prote 100.0 3.7E-32 1.3E-36 297.1 34.4 255 354-649 5-285 (297)
74 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-33 4.1E-38 318.0 22.3 321 463-1014 13-349 (588)
75 3ei3_B DNA damage-binding prot 100.0 3E-32 1E-36 310.7 34.3 251 353-650 68-340 (383)
76 1k8k_C P40, ARP2/3 complex 41 100.0 5.7E-32 2E-36 307.2 36.3 323 416-893 4-363 (372)
77 3odt_A Protein DOA1; ubiquitin 100.0 1.7E-31 5.9E-36 295.1 38.5 282 415-936 13-299 (313)
78 3i2n_A WD repeat-containing pr 100.0 2.8E-32 9.6E-37 307.8 32.5 255 351-650 10-292 (357)
79 1k8k_C P40, ARP2/3 complex 41 100.0 7.9E-32 2.7E-36 306.0 35.2 244 357-649 7-274 (372)
80 4h5i_A Guanine nucleotide-exch 100.0 1.2E-32 4.1E-37 309.9 27.9 295 465-934 14-344 (365)
81 3k26_A Polycomb protein EED; W 100.0 4.7E-32 1.6E-36 307.1 33.0 310 356-781 16-365 (366)
82 1sq9_A Antiviral protein SKI8; 100.0 7.3E-32 2.5E-36 309.4 34.9 251 356-658 14-330 (397)
83 2j04_A TAU60, YPL007P, hypothe 100.0 2.7E-33 9.3E-38 315.1 21.8 314 357-879 14-349 (588)
84 3dwl_C Actin-related protein 2 100.0 6E-33 2E-37 315.9 24.0 257 357-648 10-280 (377)
85 3odt_A Protein DOA1; ubiquitin 100.0 2.8E-31 9.5E-36 293.4 36.5 246 350-650 9-256 (313)
86 4aez_A CDC20, WD repeat-contai 100.0 5.8E-31 2E-35 301.6 38.1 295 348-782 81-380 (401)
87 4h5i_A Guanine nucleotide-exch 100.0 6.6E-32 2.2E-36 303.9 29.0 294 752-1081 15-345 (365)
88 3dwl_C Actin-related protein 2 100.0 3.9E-32 1.3E-36 309.1 26.6 339 416-889 7-377 (377)
89 4gga_A P55CDC, cell division c 100.0 1.9E-30 6.5E-35 299.2 40.2 239 360-650 107-354 (420)
90 4ggc_A P55CDC, cell division c 100.0 2.5E-30 8.6E-35 286.5 39.4 283 422-933 27-315 (318)
91 4gga_A P55CDC, cell division c 100.0 1.7E-30 5.8E-35 299.7 38.7 299 422-912 107-416 (420)
92 2pm7_B Protein transport prote 100.0 9.3E-31 3.2E-35 286.0 33.4 248 816-1079 7-285 (297)
93 4aez_A CDC20, WD repeat-contai 100.0 1.4E-30 4.7E-35 298.5 35.0 290 417-899 88-388 (401)
94 3dw8_B Serine/threonine-protei 100.0 2.2E-30 7.5E-35 302.3 36.1 274 355-651 25-375 (447)
95 3bg1_A Protein SEC13 homolog; 100.0 3.6E-31 1.2E-35 292.0 27.3 226 415-650 8-248 (316)
96 3mmy_A MRNA export factor; mRN 100.0 7.9E-30 2.7E-34 288.9 34.4 293 415-933 34-346 (368)
97 3bg1_A Protein SEC13 homolog; 100.0 1.2E-30 4.1E-35 287.8 26.9 246 816-1079 11-293 (316)
98 3f3f_A Nucleoporin SEH1; struc 100.0 7.2E-30 2.5E-34 286.8 33.8 227 414-650 5-250 (351)
99 1p22_A F-BOX/WD-repeat protein 100.0 2.4E-29 8.3E-34 291.6 37.5 233 356-650 131-366 (435)
100 1yfq_A Cell cycle arrest prote 100.0 1.2E-29 4E-34 284.3 33.4 294 415-888 6-321 (342)
101 4ggc_A P55CDC, cell division c 100.0 3.8E-29 1.3E-33 277.0 36.7 282 754-1081 28-317 (318)
102 1yfq_A Cell cycle arrest prote 100.0 1.3E-29 4.6E-34 283.9 32.8 245 356-650 9-283 (342)
103 1p22_A F-BOX/WD-repeat protein 100.0 2.2E-29 7.6E-34 291.9 34.6 195 416-650 129-326 (435)
104 3dw8_B Serine/threonine-protei 100.0 1.8E-29 6.1E-34 294.6 33.4 306 750-1077 27-444 (447)
105 3jrp_A Fusion protein of prote 100.0 2.2E-29 7.6E-34 286.6 33.2 255 355-650 8-288 (379)
106 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-29 4.2E-34 290.9 31.3 253 359-651 35-301 (402)
107 3mmy_A MRNA export factor; mRN 100.0 3.2E-29 1.1E-33 283.9 33.0 256 348-650 28-305 (368)
108 3f3f_A Nucleoporin SEH1; struc 100.0 5.1E-29 1.7E-33 279.9 33.1 260 354-650 7-338 (351)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 3.4E-29 1.2E-33 287.3 30.8 287 755-1081 38-344 (402)
110 3jrp_A Fusion protein of prote 100.0 1.3E-28 4.3E-33 280.4 30.3 252 817-1081 10-289 (379)
111 3bws_A Protein LP49; two-domai 100.0 1.8E-27 6.1E-32 276.3 36.7 320 422-933 62-432 (433)
112 2xyi_A Probable histone-bindin 100.0 4E-28 1.4E-32 280.5 30.7 267 351-650 121-411 (430)
113 3jro_A Fusion protein of prote 100.0 1.8E-28 6.2E-33 303.4 28.8 257 355-650 6-286 (753)
114 2w18_A PALB2, fancn, partner a 100.0 2.6E-27 9E-32 250.0 33.0 293 468-931 42-355 (356)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.2E-27 1.1E-31 275.0 36.3 258 358-647 4-337 (450)
116 1l0q_A Surface layer protein; 100.0 1.4E-26 4.6E-31 264.8 40.1 227 371-650 2-234 (391)
117 1l0q_A Surface layer protein; 100.0 1.7E-26 5.8E-31 263.9 39.0 329 433-969 3-364 (391)
118 2w18_A PALB2, fancn, partner a 100.0 1.6E-27 5.5E-32 251.6 26.9 277 715-1078 54-356 (356)
119 3vu4_A KMHSV2; beta-propeller 100.0 1E-26 3.4E-31 260.8 34.6 299 416-850 15-338 (355)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.5E-27 1.9E-31 273.0 33.2 246 817-1084 101-396 (450)
121 3lrv_A PRE-mRNA-splicing facto 100.0 1.8E-27 6E-32 266.2 27.8 198 817-1027 124-334 (343)
122 4gq1_A NUP37; propeller, trans 100.0 6E-28 2.1E-32 274.9 24.0 267 356-647 87-387 (393)
123 4gq1_A NUP37; propeller, trans 100.0 2.1E-27 7.3E-32 270.4 28.3 351 355-890 12-388 (393)
124 3vu4_A KMHSV2; beta-propeller 100.0 2.2E-26 7.4E-31 258.0 35.0 236 355-650 16-272 (355)
125 3bws_A Protein LP49; two-domai 100.0 1.8E-26 6E-31 267.9 35.4 296 421-891 123-432 (433)
126 3jro_A Fusion protein of prote 100.0 2.8E-27 9.7E-32 292.7 28.6 253 816-1081 7-287 (753)
127 2xyi_A Probable histone-bindin 100.0 4.8E-26 1.6E-30 263.0 35.0 212 415-650 123-354 (430)
128 3lrv_A PRE-mRNA-splicing facto 100.0 1.3E-26 4.3E-31 259.2 28.7 280 472-933 43-333 (343)
129 1nir_A Nitrite reductase; hemo 99.9 3.8E-25 1.3E-29 260.6 39.6 334 365-901 144-524 (543)
130 1nir_A Nitrite reductase; hemo 99.9 6.7E-25 2.3E-29 258.6 36.7 338 472-990 144-522 (543)
131 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-22 3.7E-27 253.5 36.6 259 358-648 36-366 (741)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.8E-23 6E-28 239.2 26.8 302 465-914 62-409 (415)
133 1xfd_A DIP, dipeptidyl aminope 99.9 3.1E-23 1E-27 257.8 29.7 234 360-650 18-290 (723)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-22 4.2E-27 253.0 33.9 327 420-934 36-460 (741)
135 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.5E-23 1.9E-27 235.1 28.0 242 358-650 62-345 (415)
136 2z3z_A Dipeptidyl aminopeptida 99.9 1.2E-21 4.1E-26 242.5 31.2 243 820-1081 122-437 (706)
137 2z3z_A Dipeptidyl aminopeptida 99.9 2.3E-21 7.9E-26 239.9 32.5 248 361-648 28-341 (706)
138 1xfd_A DIP, dipeptidyl aminope 99.9 3E-21 1E-25 239.8 33.0 384 511-1033 18-450 (723)
139 1ri6_A Putative isomerase YBHE 99.9 7.2E-21 2.5E-25 212.7 30.4 300 717-1058 8-333 (343)
140 3u4y_A Uncharacterized protein 99.9 7E-20 2.4E-24 203.5 35.8 239 364-650 3-253 (331)
141 1ri6_A Putative isomerase YBHE 99.9 2.5E-20 8.6E-25 208.3 29.8 244 817-1080 36-309 (343)
142 3u4y_A Uncharacterized protein 99.9 4.1E-20 1.4E-24 205.4 31.3 286 757-1081 3-306 (331)
143 3vgz_A Uncharacterized protein 99.9 1.5E-19 5.2E-24 202.9 33.5 273 751-1070 40-335 (353)
144 1pby_B Quinohemoprotein amine 99.9 6.8E-20 2.3E-24 204.2 30.0 197 822-1034 85-318 (337)
145 1pby_B Quinohemoprotein amine 99.9 3.9E-20 1.3E-24 206.1 27.3 271 764-1086 2-317 (337)
146 3vgz_A Uncharacterized protein 99.9 2.6E-19 8.9E-24 201.0 33.7 248 353-650 35-304 (353)
147 3hfq_A Uncharacterized protein 99.8 1.4E-19 4.9E-24 202.4 28.4 248 817-1081 38-321 (347)
148 2oit_A Nucleoporin 214KDA; NH2 99.8 1.7E-18 5.9E-23 198.2 35.7 315 751-1079 36-405 (434)
149 2ojh_A Uncharacterized protein 99.8 1.2E-19 4.3E-24 197.7 24.5 233 817-1070 40-293 (297)
150 2ojh_A Uncharacterized protein 99.8 6E-19 2E-23 192.3 26.9 240 351-640 34-293 (297)
151 1z68_A Fibroblast activation p 99.8 4.4E-19 1.5E-23 219.8 29.1 285 754-1081 62-445 (719)
152 1z68_A Fibroblast activation p 99.8 6E-19 2.1E-23 218.6 28.8 334 580-1034 21-451 (719)
153 3hfq_A Uncharacterized protein 99.8 1.5E-18 5.3E-23 194.0 28.7 279 721-1030 13-323 (347)
154 2oit_A Nucleoporin 214KDA; NH2 99.8 6.2E-18 2.1E-22 193.6 31.8 259 358-648 36-332 (434)
155 1jmx_B Amine dehydrogenase; ox 99.8 2E-18 6.7E-23 193.4 26.8 241 823-1086 4-332 (349)
156 4a5s_A Dipeptidyl peptidase 4 99.8 7.7E-18 2.6E-22 208.3 34.6 234 359-651 17-296 (740)
157 3o4h_A Acylamino-acid-releasin 99.8 1.4E-18 4.7E-23 209.4 25.1 234 357-647 20-274 (582)
158 3scy_A Hypothetical bacterial 99.8 8.2E-17 2.8E-21 181.0 38.0 166 859-1031 154-344 (361)
159 4a5s_A Dipeptidyl peptidase 4 99.8 1.6E-17 5.5E-22 205.4 34.8 365 467-1034 18-457 (740)
160 3o4h_A Acylamino-acid-releasin 99.8 2.8E-18 9.6E-23 206.6 25.3 271 464-933 20-315 (582)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.4E-17 4.7E-22 187.3 26.9 250 819-1080 40-342 (365)
162 3scy_A Hypothetical bacterial 99.8 7.1E-17 2.4E-21 181.6 32.6 243 817-1079 48-337 (361)
163 1jmx_B Amine dehydrogenase; ox 99.8 5.3E-17 1.8E-21 181.7 29.0 261 362-657 3-332 (349)
164 2oiz_A Aromatic amine dehydrog 99.7 4.9E-16 1.7E-20 173.4 30.7 222 819-1061 108-360 (361)
165 3pe7_A Oligogalacturonate lyas 99.7 1.9E-16 6.5E-21 180.1 28.0 252 352-650 24-330 (388)
166 3pe7_A Oligogalacturonate lyas 99.7 5.6E-16 1.9E-20 176.3 28.0 207 416-650 26-274 (388)
167 2oiz_A Aromatic amine dehydrog 99.7 2.7E-15 9.4E-20 167.4 32.5 228 369-637 14-272 (361)
168 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.5E-15 8.5E-20 168.9 27.2 258 357-650 38-342 (365)
169 3fvz_A Peptidyl-glycine alpha- 99.7 3.8E-15 1.3E-19 164.4 25.9 252 818-1080 23-323 (329)
170 3c5m_A Oligogalacturonate lyas 99.7 2.7E-15 9.4E-20 171.0 25.1 189 826-1030 149-388 (396)
171 1q7f_A NHL, brain tumor CG1071 99.7 1.8E-14 6E-19 155.9 29.7 243 817-1080 28-281 (286)
172 3fvz_A Peptidyl-glycine alpha- 99.7 3.2E-14 1.1E-18 157.0 30.5 251 358-649 23-322 (329)
173 1qks_A Cytochrome CD1 nitrite 99.7 4E-13 1.4E-17 157.2 40.7 234 371-650 167-422 (567)
174 3c5m_A Oligogalacturonate lyas 99.7 3.6E-15 1.2E-19 170.1 22.9 238 361-650 38-330 (396)
175 3azo_A Aminopeptidase; POP fam 99.7 9.6E-15 3.3E-19 178.9 27.6 334 460-931 18-409 (662)
176 1qks_A Cytochrome CD1 nitrite 99.6 6.5E-13 2.2E-17 155.4 40.4 333 475-990 163-546 (567)
177 3azo_A Aminopeptidase; POP fam 99.6 2.7E-14 9.3E-19 174.9 29.0 243 354-647 19-321 (662)
178 4a2l_A BT_4663, two-component 99.6 2.9E-10 9.8E-15 141.7 63.7 552 358-1079 87-659 (795)
179 1q7f_A NHL, brain tumor CG1071 99.6 3E-13 1E-17 146.1 31.8 247 357-649 28-280 (286)
180 4a2l_A BT_4663, two-component 99.6 4.9E-10 1.7E-14 139.6 63.3 546 358-1081 42-616 (795)
181 2gop_A Trilobed protease; beta 99.6 2.2E-13 7.4E-18 152.1 26.2 222 820-1081 60-332 (347)
182 3no2_A Uncharacterized protein 99.6 2.3E-13 7.8E-18 144.9 24.3 253 829-1097 4-270 (276)
183 3e5z_A Putative gluconolactona 99.6 1.2E-12 4E-17 142.3 30.2 242 353-649 22-286 (296)
184 2dg1_A DRP35, lactonase; beta 99.6 5.3E-13 1.8E-17 147.9 28.0 282 752-1078 6-313 (333)
185 2gop_A Trilobed protease; beta 99.6 5.1E-13 1.8E-17 149.0 26.2 222 359-650 15-292 (347)
186 3sjl_D Methylamine dehydrogena 99.6 3.9E-12 1.3E-16 138.7 31.9 205 820-1034 138-371 (386)
187 2xdw_A Prolyl endopeptidase; a 99.5 6.9E-13 2.4E-17 163.2 28.6 249 357-651 123-416 (710)
188 3dsm_A Uncharacterized protein 99.5 1E-12 3.6E-17 144.5 26.3 241 819-1084 44-306 (328)
189 2z2n_A Virginiamycin B lyase; 99.5 2.4E-11 8.2E-16 132.0 36.9 281 750-1081 13-297 (299)
190 3e5z_A Putative gluconolactona 99.5 1.8E-12 6.2E-17 140.7 27.2 234 817-1080 26-287 (296)
191 3dsm_A Uncharacterized protein 99.5 2E-12 6.7E-17 142.3 27.3 274 721-1034 14-309 (328)
192 3v9f_A Two-component system se 99.5 1.5E-08 5.1E-13 125.9 65.0 608 358-1079 18-656 (781)
193 2bkl_A Prolyl endopeptidase; m 99.5 4.4E-13 1.5E-17 164.4 23.8 242 817-1081 119-399 (695)
194 2mad_H Methylamine dehydrogena 99.5 3.7E-11 1.3E-15 133.7 37.1 204 821-1033 127-357 (373)
195 2xdw_A Prolyl endopeptidase; a 99.5 1.3E-12 4.5E-17 160.7 27.8 244 817-1081 123-416 (710)
196 2z2n_A Virginiamycin B lyase; 99.5 4.7E-11 1.6E-15 129.7 35.9 237 752-1028 57-297 (299)
197 1rwi_B Serine/threonine-protei 99.5 2.8E-12 9.7E-17 137.1 25.4 239 820-1081 25-266 (270)
198 2bkl_A Prolyl endopeptidase; m 99.5 7.4E-13 2.5E-17 162.3 22.8 247 357-651 119-399 (695)
199 2dg1_A DRP35, lactonase; beta 99.5 5.3E-11 1.8E-15 131.6 34.7 246 354-640 40-301 (333)
200 1rwi_B Serine/threonine-protei 99.5 6.8E-12 2.3E-16 134.1 25.7 239 360-650 25-265 (270)
201 3sjl_D Methylamine dehydrogena 99.5 6.4E-12 2.2E-16 137.0 25.1 277 758-1081 39-365 (386)
202 3v9f_A Two-component system se 99.5 2.9E-08 9.8E-13 123.3 60.7 509 359-1025 115-655 (781)
203 3no2_A Uncharacterized protein 99.4 1.3E-11 4.5E-16 131.2 25.0 234 373-659 7-261 (276)
204 3c75_H MADH, methylamine dehyd 99.4 2.9E-11 9.8E-16 134.7 28.3 206 821-1033 179-409 (426)
205 2mad_H Methylamine dehydrogena 99.4 2E-10 6.7E-15 127.9 33.9 237 823-1081 70-352 (373)
206 1yr2_A Prolyl oligopeptidase; 99.4 1.5E-11 5.2E-16 151.8 22.7 248 357-651 161-443 (741)
207 2qc5_A Streptogramin B lactona 99.4 1.2E-09 4.2E-14 118.4 35.1 278 750-1078 18-299 (300)
208 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 3.2E-10 1.1E-14 124.1 29.1 257 355-649 14-299 (314)
209 2qc5_A Streptogramin B lactona 99.3 3.8E-09 1.3E-13 114.5 36.6 238 357-647 18-258 (300)
210 1yr2_A Prolyl oligopeptidase; 99.3 5.3E-11 1.8E-15 146.9 24.2 242 751-1029 162-444 (741)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 2.4E-10 8.2E-15 125.1 25.3 245 752-1026 18-299 (314)
212 3dr2_A Exported gluconolactona 99.3 6.4E-10 2.2E-14 120.9 27.2 239 353-643 39-301 (305)
213 3c75_H MADH, methylamine dehyd 99.3 5.2E-10 1.8E-14 124.6 26.0 257 368-657 82-409 (426)
214 1xip_A Nucleoporin NUP159; bet 99.3 3.1E-10 1.1E-14 124.5 23.8 174 819-1012 38-230 (388)
215 3hrp_A Uncharacterized protein 99.3 7.4E-10 2.5E-14 125.2 27.5 250 819-1077 131-408 (409)
216 3g4e_A Regucalcin; six bladed 99.3 2.3E-09 7.8E-14 116.0 29.3 235 359-638 13-261 (297)
217 3hrp_A Uncharacterized protein 99.3 2E-09 6.7E-14 121.7 29.8 255 359-647 131-408 (409)
218 1mda_H Methylamine dehydrogena 99.3 2.5E-10 8.7E-15 125.1 21.1 199 821-1034 126-354 (368)
219 2qe8_A Uncharacterized protein 99.2 1.4E-10 4.7E-15 128.5 19.1 273 752-1075 17-317 (343)
220 3g4e_A Regucalcin; six bladed 99.2 1.9E-09 6.5E-14 116.6 27.1 225 819-1067 13-260 (297)
221 4a0p_A LRP6, LRP-6, low-densit 99.2 2.6E-05 8.7E-10 92.4 66.5 525 372-1081 8-551 (628)
222 1kb0_A Quinohemoprotein alcoho 99.2 4.7E-09 1.6E-13 126.5 30.6 203 863-1079 246-567 (677)
223 3iuj_A Prolyl endopeptidase; h 99.2 1.4E-09 4.7E-14 132.8 25.9 246 357-650 127-406 (693)
224 2qe8_A Uncharacterized protein 99.2 1.5E-09 5.2E-14 120.1 23.0 251 359-641 17-313 (343)
225 2ghs_A AGR_C_1268P; regucalcin 99.2 8.5E-09 2.9E-13 113.0 28.5 227 361-639 51-292 (326)
226 1yiq_A Quinohemoprotein alcoho 99.2 3.5E-09 1.2E-13 128.0 27.2 191 863-1067 238-537 (689)
227 3s94_A LRP-6, low-density lipo 99.2 2.1E-05 7.2E-10 93.1 58.6 524 379-1081 16-553 (619)
228 1xip_A Nucleoporin NUP159; bet 99.2 5.1E-10 1.7E-14 122.8 17.6 177 422-637 39-232 (388)
229 1kb0_A Quinohemoprotein alcoho 99.1 5.8E-09 2E-13 125.8 26.9 79 839-919 457-536 (677)
230 3iuj_A Prolyl endopeptidase; h 99.1 5.5E-09 1.9E-13 127.5 26.9 242 750-1030 127-409 (693)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.1 2.8E-08 9.7E-13 111.6 30.5 158 431-614 52-216 (376)
232 2ghs_A AGR_C_1268P; regucalcin 99.1 1.4E-08 4.9E-13 111.2 27.2 225 754-1016 51-292 (326)
233 3dr2_A Exported gluconolactona 99.1 6.5E-09 2.2E-13 112.9 24.2 229 751-1020 44-301 (305)
234 1yiq_A Quinohemoprotein alcoho 99.1 1.2E-08 4.1E-13 123.3 27.5 404 432-922 70-538 (689)
235 1mda_H Methylamine dehydrogena 99.1 5.7E-09 1.9E-13 114.4 22.1 252 369-658 30-354 (368)
236 2ece_A 462AA long hypothetical 99.1 3.3E-08 1.1E-12 108.0 27.6 233 825-1067 88-399 (462)
237 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.5E-07 5.1E-12 105.7 33.0 208 838-1076 152-375 (376)
238 3hxj_A Pyrrolo-quinoline quino 99.1 7.8E-09 2.7E-13 113.9 21.9 180 426-650 25-204 (330)
239 2ece_A 462AA long hypothetical 99.0 8.1E-08 2.8E-12 105.0 27.1 248 365-637 88-399 (462)
240 1fwx_A Nitrous oxide reductase 99.0 2.5E-08 8.6E-13 113.1 23.7 240 824-1081 90-433 (595)
241 4a0p_A LRP6, LRP-6, low-densit 99.0 0.00012 4E-09 86.7 56.4 508 357-1034 35-557 (628)
242 3s94_A LRP-6, low-density lipo 99.0 0.00017 5.8E-09 85.3 58.1 496 356-983 37-552 (619)
243 2hz6_A Endoplasmic reticulum t 98.9 4.7E-10 1.6E-14 125.1 4.4 190 871-1087 8-200 (369)
244 3hxj_A Pyrrolo-quinoline quino 98.9 2.1E-07 7.1E-12 102.3 24.9 296 714-1081 30-326 (330)
245 2hz6_A Endoplasmic reticulum t 98.9 6.5E-10 2.2E-14 123.9 3.9 186 829-1034 8-200 (369)
246 1kv9_A Type II quinohemoprotei 98.8 1.9E-06 6.3E-11 103.8 31.6 168 863-1034 233-496 (668)
247 1w6s_A Methanol dehydrogenase 98.8 2.8E-06 9.5E-11 99.7 30.7 166 864-1034 245-511 (599)
248 3ei3_A DNA damage-binding prot 98.8 0.00093 3.2E-08 84.5 55.5 175 883-1079 808-999 (1158)
249 2ad6_A Methanol dehydrogenase 98.7 6.7E-06 2.3E-10 96.7 31.8 196 823-1034 239-502 (571)
250 1kv9_A Type II quinohemoprotei 98.7 3.5E-06 1.2E-10 101.4 29.9 81 881-969 437-517 (668)
251 3ott_A Two-component system se 98.7 0.0021 7.1E-08 79.2 60.2 534 358-1079 62-626 (758)
252 2iwa_A Glutamine cyclotransfer 98.7 8.4E-07 2.9E-11 91.4 20.6 206 861-1081 22-239 (266)
253 1npe_A Nidogen, entactin; glyc 98.7 9.2E-06 3.1E-10 85.8 29.3 202 820-1034 37-246 (267)
254 2iwa_A Glutamine cyclotransfer 98.7 1.2E-06 4.2E-11 90.1 21.0 200 820-1027 22-238 (266)
255 1flg_A Protein (quinoprotein e 98.6 5E-05 1.7E-09 89.4 34.1 168 863-1034 249-524 (582)
256 2ad6_A Methanol dehydrogenase 98.6 1.9E-05 6.5E-10 92.9 30.1 83 880-970 442-524 (571)
257 3nol_A Glutamine cyclotransfer 98.6 3.7E-06 1.3E-10 85.2 19.4 184 821-1015 45-244 (262)
258 1fwx_A Nitrous oxide reductase 98.5 1.9E-06 6.5E-11 97.9 18.8 235 368-638 99-407 (595)
259 3ei3_A DNA damage-binding prot 98.5 0.0078 2.7E-07 76.1 59.4 175 839-1026 807-999 (1158)
260 2fp8_A Strictosidine synthase; 98.5 1.1E-05 3.9E-10 87.8 24.7 238 820-1081 20-315 (322)
261 3nol_A Glutamine cyclotransfer 98.5 2.8E-06 9.6E-11 86.1 17.8 206 852-1073 34-250 (262)
262 3nok_A Glutaminyl cyclase; bet 98.5 4.1E-06 1.4E-10 84.7 18.6 182 821-1014 57-253 (268)
263 1npe_A Nidogen, entactin; glyc 98.5 9.2E-05 3.2E-09 78.0 30.1 223 359-631 36-263 (267)
264 3nok_A Glutaminyl cyclase; bet 98.5 2.3E-06 7.7E-11 86.6 16.1 192 862-1070 57-257 (268)
265 1w6s_A Methanol dehydrogenase 98.5 2E-05 6.8E-10 92.5 26.4 250 824-1089 111-513 (599)
266 1flg_A Protein (quinoprotein e 98.4 0.00018 6.1E-09 84.6 33.4 213 432-653 68-359 (582)
267 2xe4_A Oligopeptidase B; hydro 98.4 4.1E-05 1.4E-09 93.8 27.3 159 360-542 175-354 (751)
268 2p4o_A Hypothetical protein; p 98.4 5.6E-05 1.9E-09 81.5 25.4 231 819-1070 32-279 (306)
269 2p4o_A Hypothetical protein; p 98.4 0.00014 4.6E-09 78.5 28.2 242 348-639 21-278 (306)
270 2fp8_A Strictosidine synthase; 98.4 0.00011 3.6E-09 80.1 27.2 257 359-649 19-313 (322)
271 3mbr_X Glutamine cyclotransfer 98.4 3.7E-05 1.3E-09 77.3 20.9 187 819-1015 21-223 (243)
272 2xe4_A Oligopeptidase B; hydro 98.4 2.9E-05 9.8E-10 95.1 24.4 195 820-1024 175-398 (751)
273 3mbr_X Glutamine cyclotransfer 98.3 4.9E-05 1.7E-09 76.4 20.2 201 861-1076 22-232 (243)
274 3qqz_A Putative uncharacterize 98.3 0.00024 8.1E-09 72.7 24.7 218 854-1077 21-251 (255)
275 3qqz_A Putative uncharacterize 98.2 0.00056 1.9E-08 69.9 26.9 164 357-542 25-204 (255)
276 2xbg_A YCF48-like protein; pho 98.2 0.0013 4.5E-08 71.2 31.7 234 818-1076 79-319 (327)
277 1ijq_A LDL receptor, low-densi 98.2 0.00047 1.6E-08 74.4 27.0 207 818-1034 29-246 (316)
278 3v64_C Agrin; beta propeller, 98.2 0.00076 2.6E-08 73.9 28.7 238 820-1081 35-277 (349)
279 3v65_B Low-density lipoprotein 98.2 0.00052 1.8E-08 76.4 27.8 236 822-1081 80-320 (386)
280 4hw6_A Hypothetical protein, I 98.2 0.00033 1.1E-08 79.1 25.7 249 820-1078 140-432 (433)
281 3tc9_A Hypothetical hydrolase; 98.2 0.0004 1.4E-08 78.4 26.2 247 820-1078 138-429 (430)
282 3v64_C Agrin; beta propeller, 98.1 0.00063 2.2E-08 74.5 26.7 205 819-1034 73-283 (349)
283 1k3i_A Galactose oxidase precu 98.1 0.0002 6.8E-09 86.4 23.4 237 820-1068 244-530 (656)
284 3p5b_L Low density lipoprotein 98.1 0.0025 8.4E-08 71.2 30.4 230 831-1081 84-322 (400)
285 2xbg_A YCF48-like protein; pho 98.1 0.0073 2.5E-07 65.3 33.1 194 819-1023 122-319 (327)
286 1ijq_A LDL receptor, low-densi 98.0 0.0058 2E-07 65.8 31.9 225 380-650 9-239 (316)
287 1k3i_A Galactose oxidase precu 98.0 0.00038 1.3E-08 84.0 24.6 249 823-1081 190-499 (656)
288 3p5b_L Low density lipoprotein 98.0 0.0012 4.2E-08 73.6 26.9 208 818-1034 111-328 (400)
289 3v65_B Low-density lipoprotein 98.0 0.0025 8.4E-08 70.9 29.3 215 353-613 110-326 (386)
290 3ott_A Two-component system se 97.9 0.09 3.1E-06 64.4 57.1 498 359-1024 103-624 (758)
291 1n7d_A LDL receptor, low-densi 97.9 0.00012 4E-09 88.3 16.0 207 819-1034 406-622 (699)
292 4hw6_A Hypothetical protein, I 97.9 0.0028 9.6E-08 71.4 26.3 253 359-647 139-431 (433)
293 3tc9_A Hypothetical hydrolase; 97.9 0.0038 1.3E-07 70.4 27.3 156 359-542 137-301 (430)
294 3sov_A LRP-6, low-density lipo 97.8 0.0042 1.4E-07 66.7 25.0 204 820-1034 36-246 (318)
295 3amr_A 3-phytase; beta-propell 97.8 0.0036 1.2E-07 66.3 23.5 196 829-1034 39-272 (355)
296 3m0c_C LDL receptor, low-densi 97.8 0.0066 2.3E-07 73.4 28.2 207 818-1034 423-640 (791)
297 3kya_A Putative phosphatase; s 97.7 0.0048 1.6E-07 69.5 25.0 253 753-1030 140-479 (496)
298 3kya_A Putative phosphatase; s 97.7 0.0075 2.6E-07 67.9 26.1 253 820-1081 140-477 (496)
299 3sov_A LRP-6, low-density lipo 97.7 0.011 3.7E-07 63.4 26.6 210 359-613 35-246 (318)
300 2xzh_A Clathrin heavy chain 1; 97.6 0.081 2.8E-06 54.7 30.1 235 821-1081 69-334 (365)
301 3amr_A 3-phytase; beta-propell 97.6 0.0066 2.3E-07 64.3 21.8 192 872-1078 40-262 (355)
302 2p9w_A MAL S 1 allergenic prot 97.5 0.015 5.2E-07 60.9 22.3 203 818-1025 12-264 (334)
303 3m0c_C LDL receptor, low-densi 97.5 0.062 2.1E-06 65.0 30.8 208 420-651 423-634 (791)
304 2xtc_A F-box-like/WD repeat-co 97.3 0.00017 5.9E-09 57.8 4.0 36 1-36 1-36 (90)
305 2ism_A Putative oxidoreductase 97.3 0.13 4.4E-06 56.0 28.6 109 357-485 29-152 (352)
306 1n7d_A LDL receptor, low-densi 97.3 0.0034 1.2E-07 75.5 17.1 203 422-650 407-615 (699)
307 2g8s_A Glucose/sorbosone dehyd 97.3 0.056 1.9E-06 58.9 25.3 243 820-1078 19-351 (353)
308 3a9g_A Putative uncharacterize 97.3 0.098 3.3E-06 56.9 26.9 231 819-1067 29-330 (354)
309 3a9g_A Putative uncharacterize 97.2 0.32 1.1E-05 52.8 30.8 109 357-485 27-152 (354)
310 2ism_A Putative oxidoreductase 97.2 0.032 1.1E-06 60.9 22.7 233 820-1067 32-333 (352)
311 1bpo_A Protein (clathrin); cla 97.2 0.36 1.2E-05 52.1 30.5 96 839-935 226-333 (494)
312 2xzh_A Clathrin heavy chain 1; 97.2 0.3 1E-05 50.6 32.4 248 363-650 71-333 (365)
313 1bpo_A Protein (clathrin); cla 97.1 0.44 1.5E-05 51.4 30.6 248 363-650 70-332 (494)
314 2p9w_A MAL S 1 allergenic prot 97.1 0.019 6.5E-07 60.2 18.0 168 902-1079 12-215 (334)
315 3pbp_A Nucleoporin NUP82; beta 97.0 0.036 1.2E-06 59.8 18.8 108 824-933 26-158 (452)
316 3ii7_A Kelch-like protein 7; p 96.9 0.097 3.3E-06 55.8 23.0 225 831-1081 13-274 (306)
317 2vpj_A Kelch-like protein 12; 96.8 0.1 3.5E-06 55.4 21.7 227 829-1081 14-280 (301)
318 2xn4_A Kelch-like protein 2; s 96.7 0.19 6.4E-06 53.4 23.1 230 829-1086 15-281 (302)
319 2vpj_A Kelch-like protein 12; 96.6 0.21 7.3E-06 52.9 22.3 189 827-1030 60-282 (301)
320 1zgk_A Kelch-like ECH-associat 96.5 0.25 8.5E-06 52.6 22.4 228 828-1081 23-289 (308)
321 3sre_A PON1, serum paraoxonase 96.5 0.36 1.2E-05 51.8 22.7 188 862-1069 52-287 (355)
322 1cru_A Protein (soluble quinop 96.4 0.57 1.9E-05 52.7 24.9 103 820-922 28-163 (454)
323 4asc_A Kelch repeat and BTB do 96.4 0.54 1.8E-05 50.1 24.0 223 838-1086 12-282 (315)
324 1xi4_A Clathrin heavy chain; a 96.4 0.17 6E-06 63.0 21.3 237 821-1081 68-333 (1630)
325 3das_A Putative oxidoreductase 96.2 1.6 5.3E-05 46.7 25.9 201 819-1028 32-294 (347)
326 2g8s_A Glucose/sorbosone dehyd 96.2 1.9 6.5E-05 46.6 28.0 114 358-486 17-149 (353)
327 3ii7_A Kelch-like protein 7; p 96.1 0.33 1.1E-05 51.5 20.5 188 828-1030 54-276 (306)
328 2be1_A Serine/threonine-protei 96.1 0.012 4.2E-07 62.7 8.5 200 872-1084 10-236 (339)
329 1tl2_A L10, protein (tachylect 96.1 0.023 7.7E-07 55.3 9.4 150 861-1020 42-204 (236)
330 2uvk_A YJHT; unknown function, 95.8 0.67 2.3E-05 50.4 21.8 94 827-923 17-128 (357)
331 1tl2_A L10, protein (tachylect 95.8 0.12 4.1E-06 50.3 13.1 148 820-976 42-204 (236)
332 2xn4_A Kelch-like protein 2; s 95.8 0.69 2.4E-05 48.8 21.0 188 828-1030 60-280 (302)
333 3pbp_A Nucleoporin NUP82; beta 95.8 0.13 4.3E-06 55.6 14.4 126 359-494 66-208 (452)
334 1uuj_A Platelet-activating fac 95.7 0.0097 3.3E-07 47.4 4.3 55 5-59 10-66 (88)
335 3sre_A PON1, serum paraoxonase 95.6 0.75 2.6E-05 49.4 20.2 189 422-637 51-285 (355)
336 4asc_A Kelch repeat and BTB do 95.6 1.3 4.3E-05 47.2 22.5 142 373-543 7-175 (315)
337 2uvk_A YJHT; unknown function, 95.4 1.5 5.1E-05 47.6 22.5 198 828-1034 64-350 (357)
338 2woz_A Kelch repeat and BTB do 95.2 2.3 7.9E-05 45.1 22.6 219 839-1081 24-289 (318)
339 1zgk_A Kelch-like ECH-associat 95.0 1.3 4.4E-05 46.9 20.0 188 828-1030 69-291 (308)
340 3s25_A Hypothetical 7-bladed b 94.8 2.9 9.9E-05 43.8 21.3 173 826-1028 21-218 (302)
341 3das_A Putative oxidoreductase 94.8 5.2 0.00018 42.6 29.5 113 357-485 30-157 (347)
342 1xi4_A Clathrin heavy chain; a 94.8 0.96 3.3E-05 56.7 19.5 213 364-614 71-298 (1630)
343 3sbq_A Nitrous-oxide reductase 94.3 1.5 5E-05 49.1 17.7 246 828-1084 140-483 (638)
344 1cru_A Protein (soluble quinop 94.2 4 0.00014 45.7 22.2 110 903-1015 27-163 (454)
345 2woz_A Kelch repeat and BTB do 93.9 2.4 8.1E-05 45.0 19.0 193 825-1032 52-293 (318)
346 3qhy_B Beta-lactamase inhibito 93.3 7.7 0.00026 40.1 20.9 223 820-1080 25-247 (282)
347 3sbq_A Nitrous-oxide reductase 93.3 13 0.00044 41.8 28.2 101 818-921 322-453 (638)
348 3b7f_A Glycosyl hydrolase, BNR 92.5 14 0.00049 40.3 27.7 260 818-1086 54-377 (394)
349 3s25_A Hypothetical 7-bladed b 92.3 12 0.00042 39.0 23.8 107 363-502 57-180 (302)
350 2zwa_A Leucine carboxyl methyl 91.6 6 0.0002 47.2 19.7 194 828-1030 396-639 (695)
351 2wg3_C Hedgehog-interacting pr 89.6 29 0.001 38.6 27.1 115 359-486 14-158 (463)
352 3qhy_B Beta-lactamase inhibito 89.2 22 0.00075 36.6 22.7 184 820-1027 64-247 (282)
353 3q6k_A 43.2 kDa salivary prote 89.2 11 0.00039 40.4 17.0 172 840-1013 124-341 (381)
354 2be1_A Serine/threonine-protei 89.1 0.67 2.3E-05 49.3 7.3 125 481-615 12-140 (339)
355 3uc1_A DNA gyrase subunit A; D 88.3 28 0.00096 36.6 25.2 159 817-982 93-279 (327)
356 2zwa_A Leucine carboxyl methyl 84.6 15 0.00053 43.7 16.8 196 871-1081 397-637 (695)
357 4hvt_A Ritya.17583.B, post-pro 84.5 72 0.0025 37.7 26.3 235 823-1078 133-429 (711)
358 2wg3_C Hedgehog-interacting pr 84.1 17 0.00059 40.5 15.8 113 903-1016 14-159 (463)
359 3no0_A DNA gyrase subunit A; D 81.8 49 0.0017 33.8 21.4 113 817-933 66-196 (276)
360 4gq2_M Nucleoporin NUP120; bet 81.0 5.8 0.0002 49.2 11.3 81 996-1081 236-319 (950)
361 3b7f_A Glycosyl hydrolase, BNR 73.6 1E+02 0.0036 33.2 23.2 203 872-1085 22-266 (394)
362 4gq2_M Nucleoporin NUP120; bet 71.8 1E+02 0.0034 38.1 18.8 73 576-648 237-316 (950)
363 3q6k_A 43.2 kDa salivary prote 70.4 1.2E+02 0.0041 32.5 23.5 62 443-505 124-197 (381)
364 3no0_A DNA gyrase subunit A; D 69.8 1E+02 0.0034 31.4 20.8 197 820-1027 25-247 (276)
365 3f7f_A Nucleoporin NUP120; nuc 66.0 38 0.0013 39.5 12.1 37 997-1035 223-259 (729)
366 2nxp_A Transcription initiatio 65.1 8.6 0.00029 35.3 5.5 55 72-126 52-106 (156)
367 1suu_A DNA gyrase subunit A; t 63.4 1.4E+02 0.0049 30.9 27.2 202 712-933 6-231 (312)
368 2j4b_A TAF5, transcription ini 62.8 6.8 0.00023 35.1 4.2 53 72-125 33-85 (138)
369 4hvt_A Ritya.17583.B, post-pro 55.6 3.1E+02 0.011 32.3 28.8 181 839-1029 216-432 (711)
370 4fhn_B Nucleoporin NUP120; pro 53.4 5.9 0.0002 50.5 3.0 41 997-1037 239-279 (1139)
371 4gco_A Protein STI-1; structur 52.9 56 0.0019 28.3 8.7 97 15-118 23-124 (126)
372 4fhn_B Nucleoporin NUP120; pro 51.5 97 0.0033 39.3 13.7 39 576-614 239-277 (1139)
373 3uc1_A DNA gyrase subunit A; D 49.8 2.4E+02 0.0084 29.3 27.9 202 819-1027 42-280 (327)
374 3lpz_A GET4 (YOR164C homolog); 49.6 94 0.0032 32.4 10.7 23 38-60 16-41 (336)
375 2j49_A Transcription initiatio 49.0 7.1 0.00024 35.4 1.9 28 71-99 34-61 (148)
376 2wpv_A GET4, UPF0363 protein Y 49.0 99 0.0034 32.0 10.8 108 38-184 17-125 (312)
377 1wp5_A Topoisomerase IV; broke 47.7 2.6E+02 0.0089 29.0 26.2 202 819-1026 39-277 (323)
378 3zwu_A Alkaline phosphatase PH 45.3 50 0.0017 37.9 8.6 60 954-1014 477-549 (592)
379 4a9v_A PHOX; hydrolase, beta-p 44.5 64 0.0022 36.5 9.1 61 953-1014 476-549 (592)
380 2d68_A FOP, FGFR1OP; alpha hel 44.4 20 0.00068 28.4 3.5 29 7-35 20-48 (82)
381 3mkr_A Coatomer subunit epsilo 42.3 97 0.0033 31.7 9.9 84 6-100 65-156 (291)
382 3kci_A Probable E3 ubiquitin-p 38.8 3.9E+02 0.013 28.5 27.0 288 713-1026 9-345 (389)
383 1zi0_A DNA gyrase subunit A; b 38.7 3.4E+02 0.012 27.9 28.4 162 859-1026 94-277 (307)
384 1wp5_A Topoisomerase IV; broke 38.1 3.6E+02 0.012 27.9 27.9 190 828-1026 3-225 (323)
385 4gcn_A Protein STI-1; structur 37.8 1.2E+02 0.004 26.1 8.4 100 15-116 18-123 (127)
386 3zwu_A Alkaline phosphatase PH 36.5 64 0.0022 37.0 7.7 59 861-920 477-548 (592)
387 2zux_A YESW protein; beta-prop 36.1 5.1E+02 0.018 29.1 23.1 55 560-614 347-409 (591)
388 2lni_A Stress-induced-phosphop 35.6 1.9E+02 0.0066 24.1 10.3 89 8-102 19-112 (133)
389 4a9v_A PHOX; hydrolase, beta-p 35.4 94 0.0032 35.2 8.6 61 860-921 476-549 (592)
390 1zi0_A DNA gyrase subunit A; b 35.1 3.9E+02 0.013 27.4 28.4 236 829-1079 2-277 (307)
391 3mkr_A Coatomer subunit epsilo 33.9 1.7E+02 0.0058 29.8 10.2 17 44-60 140-156 (291)
392 4ga2_A E3 SUMO-protein ligase 33.8 1.4E+02 0.0049 26.4 8.6 93 21-121 13-111 (150)
393 3f7f_A Nucleoporin NUP120; nuc 31.1 2.3E+02 0.008 33.1 11.1 30 585-614 230-259 (729)
394 3l6v_A GYRA, DNA gyrase subuni 31.0 5E+02 0.017 27.5 26.8 158 367-542 4-180 (370)
395 2k9m_A RNA polymerase sigma fa 28.7 49 0.0017 29.1 4.0 34 3-36 19-53 (130)
396 1elr_A TPR2A-domain of HOP; HO 28.7 2.5E+02 0.0084 23.2 9.7 94 9-102 8-107 (131)
397 4g26_A Pentatricopeptide repea 28.1 3E+02 0.01 30.7 11.6 45 16-60 116-166 (501)
398 1oyi_A Double-stranded RNA-bin 26.5 36 0.0012 27.0 2.4 30 6-37 16-45 (82)
399 3qou_A Protein YBBN; thioredox 26.1 2.3E+02 0.0078 28.6 9.5 101 12-119 124-229 (287)
400 1vk8_A Hypothetical protein TM 26.0 11 0.00037 31.7 -0.8 37 23-60 36-72 (106)
401 3upv_A Heat shock protein STI1 25.9 2.9E+02 0.0098 23.0 9.4 87 10-102 9-100 (126)
402 1kdl_A YOPD protein; yersinia, 25.4 40 0.0014 19.4 1.7 12 6-17 5-16 (26)
403 1elw_A TPR1-domain of HOP; HOP 24.9 2.7E+02 0.0092 22.3 10.1 89 8-102 7-100 (118)
404 3sz7_A HSC70 cochaperone (SGT) 24.7 2.4E+02 0.0081 25.2 8.5 85 11-101 17-106 (164)
405 3mez_A Mannose-specific lectin 24.5 3.1E+02 0.011 22.9 9.0 56 906-981 22-77 (111)
406 2qfc_A PLCR protein; TPR, HTH, 24.2 3.1E+02 0.011 27.5 10.2 95 7-102 77-183 (293)
407 2pl2_A Hypothetical conserved 23.9 3.8E+02 0.013 25.4 10.3 106 8-118 8-127 (217)
408 2zux_A YESW protein; beta-prop 22.7 8.5E+02 0.029 27.4 27.4 179 357-550 177-408 (591)
409 2k9l_A RNA polymerase sigma fa 22.2 51 0.0018 25.7 2.6 35 2-36 27-62 (76)
410 2zuy_A YESX protein; beta-prop 21.9 9E+02 0.031 27.4 21.9 227 367-629 108-428 (620)
411 1suu_A DNA gyrase subunit A; t 21.3 6.7E+02 0.023 25.6 31.1 157 819-982 47-231 (312)
412 2xev_A YBGF; tetratricopeptide 21.3 2.9E+02 0.0099 22.9 8.0 90 9-102 6-104 (129)
413 2ysi_A Transcription elongatio 21.2 1.6E+02 0.0054 19.5 4.4 29 1061-1089 11-39 (40)
414 3u4t_A TPR repeat-containing p 21.1 4.1E+02 0.014 25.8 10.3 91 9-102 7-102 (272)
415 3urz_A Uncharacterized protein 20.8 3.9E+02 0.013 25.1 9.5 105 6-118 5-131 (208)
416 2vgx_A Chaperone SYCD; alterna 20.8 4.2E+02 0.014 23.1 10.0 81 13-100 29-115 (148)
417 4asv_A Small glutamine-rich te 20.6 26 0.0009 28.1 0.5 19 1-19 15-33 (92)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.9e-66 Score=629.93 Aligned_cols=565 Identities=23% Similarity=0.360 Sum_probs=468.0
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
++.+|++.|+|++|||||++ ||+|+.|++|+|||. +++.+. .+.+|.+.|++++|||||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspdg 69 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPDG 69 (577)
T ss_dssp EECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTTS
T ss_pred EECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCCC
Confidence 45569999999999999996 999999999999995 566554 478999999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
++||+++.|++|+|||.. ++.+. .+.+|...|.+++|+|+++ ++++++.|+.+++|+.. ........+|...|
T Consensus 70 ~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~v 142 (577)
T 2ymu_A 70 QTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSSV 142 (577)
T ss_dssp SEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSCE
T ss_pred CEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCce
Confidence 999999999999999964 45444 6889999999999999999 79999999999999965 45566778899999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
..+.+++ ++..+++++.++.+++|+... ........+...+..+ .++|++.+++++
T Consensus 143 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~---------------------~~~~~~~~l~~~ 198 (577)
T 2ymu_A 143 WGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGV---------------------AFSPDGQTIASA 198 (577)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEE---------------------EECTTSSCEEEE
T ss_pred eeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeee---------------------eecCCCCEEEEE
Confidence 9998765 457899999999999998643 2233333444444444 455555579999
Q ss_pred eCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCC
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1114)
+.|+.|++||. +++.+..+..+ ...|.+++|+|++++|++++.|+.|++|+.. + +.+..+.+|...+..
T Consensus 199 ~~d~~v~~w~~-~~~~~~~~~~~--~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~-~~~~~~~~~~~~v~~------ 267 (577)
T 2ymu_A 199 SDDKTVKLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVNG------ 267 (577)
T ss_dssp ETTSEEEEECT-TSCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEECTT-S-CEEEEECCCSSCEEE------
T ss_pred cCCCEEEEEeC-CCcEEEEEecC--CCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-C-CEEEEEecCCCCEEE------
Confidence 99999999996 56777777766 4479999999999999999999999999964 3 455566665543321
Q ss_pred CCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccccc
Q 001248 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1114)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1114)
..+.+++..+++++.|+.+++|+.... ....+ .+|..
T Consensus 268 -----------------------------------v~~~~d~~~l~~~~~d~~i~~w~~~~~----~~~~~----~~h~~ 304 (577)
T 2ymu_A 268 -----------------------------------VAFRPDGQTIASASDDKTVKLWNRNGQ----LLQTL----TGHSS 304 (577)
T ss_dssp -----------------------------------EEECTTSSEEEEEETTSCEEEEETTSC----EEEEE----CCCSS
T ss_pred -----------------------------------EEEcCCCCEEEEEeCCCEEEEEeCCCc----EEEEE----ecCCC
Confidence 223457788999999999999996531 11111 34889
Q ss_pred ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
.|.+++|+|+++.+++++.|+.+++|++.... +.. +. +|...+.+++|+|++++
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----------------------~~~--~~--~~~~~v~~~~~s~~g~~ 358 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----------------------LQT--LT--GHSSSVWGVAFSPDGQT 358 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCE----------------------EEE--EC--CCSSCEEEEEECTTSSE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----------------------eEE--Ee--CCCCCEEEEEECCCCCE
Confidence 99999999999999999999999999864211 111 12 37889999999999999
Q ss_pred EEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEc
Q 001248 833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS 911 (1114)
Q Consensus 833 l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s 911 (1114)
|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+
T Consensus 359 l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s 435 (577)
T 2ymu_A 359 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS 435 (577)
T ss_dssp EEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC
Confidence 99999 899999995 5678888999999999999999 9999999999999999995 577888999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeee
Q 001248 912 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV 990 (1114)
Q Consensus 912 ~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~ 990 (1114)
||+++|++++.|++|++||.... .+....+|. ..|.+++|+|||++|++ +.|+.|++||. +++++..+.
T Consensus 436 ~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~ 505 (577)
T 2ymu_A 436 PDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT 505 (577)
T ss_dssp TTSSEEEEEETTSEEEEEETTSC------EEEEEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe
Confidence 99999999999999999997642 233344444 47899999999999999 58999999995 677777776
Q ss_pred cCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCC
Q 001248 991 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1070 (1114)
Q Consensus 991 ~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg 1070 (1114)
+|...|++++|+|||++|++++.||.|++||. +++.+..+. +|... |. +++|+| |+++|+|++.||
T Consensus 506 --~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h~~~-v~--~~~fs~-dg~~l~s~~~D~ 571 (577)
T 2ymu_A 506 --GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------GHSSS-VW--GVAFSP-DGQTIASASSDK 571 (577)
T ss_dssp --CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------CCSSC-EE--EEEECT-TSSCEEEEETTS
T ss_pred --CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------CCCCC-EE--EEEEcC-CCCEEEEEeCCC
Confidence 89999999999999999999999999999996 677777766 44333 55 899999 689999999999
Q ss_pred cEEEEe
Q 001248 1071 GVHVFE 1076 (1114)
Q Consensus 1071 ~v~vW~ 1076 (1114)
+|++||
T Consensus 572 ~i~~Wd 577 (577)
T 2ymu_A 572 TVKLWN 577 (577)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.8e-65 Score=617.57 Aligned_cols=577 Identities=14% Similarity=0.131 Sum_probs=449.3
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+.+.+.+++|||||++ |++++ ++.|+|||+.+++... .+.+|.+.|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 5788899999999995 88877 6799999998876654 4789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC----CCEEEEeCCCCcceeEeeccccCE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+||++ .|++++.+ ++|++|| +++.+..+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 9999999999999765533 2236789999999999999999 67776654 3577776 577788899999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
.+++|+++.. ..|++++.|++|++||..+.+....+..|...|.+++|+|+|+ +|+++
T Consensus 151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~---------------------~las~ 208 (611)
T 1nr0_A 151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS---------------------LFAST 208 (611)
T ss_dssp EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS---------------------EEEEE
T ss_pred eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC---------------------EEEEE
Confidence 9999876532 3699999999999999887666667777777777777666665 79999
Q ss_pred eCCCeEEEEECCCcceEEEeccC-----CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccC
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1114)
+.|++|++||+.+++.+..+... +|...|.+++|+|+|++|++++.|++|++||+.++ +....+..+.....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~~-- 285 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIED-- 285 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGGG--
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCccc--
Confidence 99999999999999988887421 34568999999999999999999999999999887 44444432110000
Q ss_pred CCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCc
Q 001248 668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747 (1114)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 747 (1114)
.......++..+++++.|+.+++|+...... ... .
T Consensus 286 --------------------------------------~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~---~~~----~ 320 (611)
T 1nr0_A 286 --------------------------------------QQLGIIWTKQALVSISANGFINFVNPELGSI---DQV----R 320 (611)
T ss_dssp --------------------------------------CEEEEEECSSCEEEEETTCCEEEEETTTTEE---EEE----E
T ss_pred --------------------------------------eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCc---ceE----E
Confidence 0000112567899999999999999765321 111 1
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
.+|...|.+++|+|+|++|++++.|+.|++||+.. +....... .+|...|.+++++
T Consensus 321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~----------------------~~~~~~~~--~~h~~~v~~~~~s 376 (611)
T 1nr0_A 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDIST----------------------GISNRVFP--DVHATMITGIKTT 376 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------CCEEECSS--CSCSSCEEEEEEC
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC----------------------Cceeeecc--cCCcceEEEEEEC
Confidence 35889999999999999999999999999998753 22222111 2388899999999
Q ss_pred eCCCEEEEEe-CCeEEEEEcCCCcccccc---CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccccc
Q 001248 828 KNDSYVMSAS-GGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1114)
Q Consensus 828 ~d~~~l~~~~-dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1114)
+++. +++++ |+++++|++.++...... ........+++|+| ++.+++++ .++.+++|+ .++ +..+. |..
T Consensus 377 ~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~ 449 (611)
T 1nr0_A 377 SKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISY 449 (611)
T ss_dssp TTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSS
T ss_pred CCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCC
Confidence 8775 55555 999999998875543210 11234568899999 88777777 467899998 344 45554 888
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001248 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK 982 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~ 982 (1114)
.+++++|+|||++||+|+.|++|++||+.++.... ... .+|. ..|.+++|+|||++|++ +.|+.|++|++.+
T Consensus 450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 89999999999999999999999999998753211 111 2333 47999999999999999 6899999999988
Q ss_pred -CceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee-e-EEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 983 -LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL-R-CRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 983 -~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~-~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
++........+|...|.+++|+|||++||+|+.|++|++||+.++.. . ..+. +|....|. +++|+| |
T Consensus 523 ~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~-------~h~~~~v~--~v~fs~-d 592 (611)
T 1nr0_A 523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG-------AHAMSSVN--SVIWLN-E 592 (611)
T ss_dssp TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT-------SSTTSCEE--EEEEEE-T
T ss_pred CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhc-------cCcccCee--EEEEcC-C
Confidence 65554422335999999999999999999999999999999988753 2 2222 44223355 899999 5
Q ss_pred CCeEEEEeCCCcEEEEecc
Q 001248 1060 PNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1060 ~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
++ |++++.||+|++|+++
T Consensus 593 ~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 593 TT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TE-EEEEETTSCEEEEECC
T ss_pred CE-EEEecCCCCEEEEecc
Confidence 66 9999999999999973
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.2e-61 Score=583.98 Aligned_cols=540 Identities=14% Similarity=0.185 Sum_probs=426.9
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
...+|.+.|++++|||||++ ||+|+.||+|+|||+.+++..... .+.+|.+.|.+++|+|||
T Consensus 54 ~~~~h~~~v~~~~~spdg~~-lasg~~d~~v~lWd~~~~~~~~~~-----------------~~~~~~~~v~~v~fs~dg 115 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKT-----------------TIPVFSGPVKDISWDSES 115 (611)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEESSSTTCCEEE-----------------EEECSSSCEEEEEECTTS
T ss_pred EecCCCCceEEEEECCCCcE-EEEEeCCCCEEEeECCCCcceeeE-----------------eecccCCceEEEEECCCC
Confidence 34469999999999999995 999999999999999765443211 367899999999999999
Q ss_pred CeEEEEeCC----CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc
Q 001248 433 SLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1114)
Q Consensus 433 ~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 508 (1114)
++||+++.+ +.|++|| +++... .+.+|...|.+++|+|++.. .|++|+.|++|++||..+++++.++.+|
T Consensus 116 ~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H 189 (611)
T 1nr0_A 116 KRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEH 189 (611)
T ss_dssp CEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEETTTBEEEEEECCC
T ss_pred CEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccc
Confidence 999999865 3677776 455444 68899999999999999874 5999999999999999999999999999
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec-------CCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-------APGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
...|.+++|++ ++.+|++++.|++|++||+.+++....+. .|...|.+++|
T Consensus 190 ~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~-------------------- 247 (611)
T 1nr0_A 190 TKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW-------------------- 247 (611)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE--------------------
T ss_pred cCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEE--------------------
Confidence 99999999865 56899999999999999998876655542 34445555555
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC-CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccc
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1114)
+|++++|++++.|++|++||+.+++.+..+..+.. ...+..+.| ++..+++++.|+.+++|+..++ .....+.+|
T Consensus 248 -spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~gh 323 (611)
T 1nr0_A 248 -SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG-SIDQVRYGH 323 (611)
T ss_dssp -CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT-EEEEEECCC
T ss_pred -CCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCC-CcceEEcCC
Confidence 45555899999999999999999998888864321 112334555 7889999999999999999877 456666677
Q ss_pred ccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccc
Q 001248 661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 740 (1114)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 740 (1114)
...+.. ..+.+++..+++++.|+.|++||+........
T Consensus 324 ~~~v~~-----------------------------------------l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~- 361 (611)
T 1nr0_A 324 NKAITA-----------------------------------------LSSSADGKTLFSADAEGHINSWDISTGISNRV- 361 (611)
T ss_dssp SSCEEE-----------------------------------------EEECTTSSEEEEEETTSCEEEEETTTCCEEEC-
T ss_pred CCCEEE-----------------------------------------EEEeCCCCEEEEEeCCCcEEEEECCCCceeee-
Confidence 654432 22346789999999999999999986432211
Q ss_pred cccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCC
Q 001248 741 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA 820 (1114)
Q Consensus 741 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~ 820 (1114)
...+|...|.+++|++++ .+++++.|+.+++|++......... .... .....
T Consensus 362 -----~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~-----------------~~~~-----~~~~~ 413 (611)
T 1nr0_A 362 -----FPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSK-----------------AVAN-----KLSSQ 413 (611)
T ss_dssp -----SSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTS-----------------CCEE-----ECSSC
T ss_pred -----cccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccc-----------------eeee-----ecCCC
Confidence 113488899999999776 5889999999999987542211000 0000 02334
Q ss_pred ccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE--EEee
Q 001248 821 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKL 898 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~--~~~l 898 (1114)
..+++++|+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++||+.+++. +..
T Consensus 414 ~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~- 487 (611)
T 1nr0_A 414 PLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT- 487 (611)
T ss_dssp EEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-
T ss_pred CcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-
Confidence 6789999999999888899999998 333 44454 777899999999 999999999999999999987653 234
Q ss_pred cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEE
Q 001248 899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLA 976 (1114)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~ 976 (1114)
.+|...|++++|+|||++|++++.|++|++|++.+ ++... .....+|. ..|.+++|+|||++|++ +.|+.|+
T Consensus 488 ~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~ 561 (611)
T 1nr0_A 488 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHT---AKVACVSWSPDNVRLATGSLDNSVI 561 (611)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCS---SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeecc---cceeEEEECCCCCEEEEEECCCcEE
Confidence 67999999999999999999999999999999986 32211 11122344 48999999999999999 6899999
Q ss_pred EEEcCCCceeeeeecCCC-CcCeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001248 977 IFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 977 iwd~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
+||+.++.........+| ...|++++|+||++ |++++.|++|++|++.
T Consensus 562 lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 562 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999998764321223478 89999999999998 9999999999999973
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.1e-60 Score=576.81 Aligned_cols=551 Identities=23% Similarity=0.358 Sum_probs=452.5
Q ss_pred CCCChhhhhcccCCCCCccccccCcccccccccCCCCcCCCCcCCCCCCCCCcceeEec-cCCCCceEEEEcCCCCeEEE
Q 001248 297 PSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTL-NQGSSPMSMDFHPVQQTLLL 375 (1114)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~spdg~~ll~ 375 (1114)
.+||+++++.... +..++||.. . .+..+.+ +|.+.|++++|||||++ ||
T Consensus 24 ~spdg~~las~~~--------d~~v~iWd~--~-------------------~~~~~~l~gh~~~V~~l~fspdg~~-la 73 (577)
T 2ymu_A 24 FSPDGQTIASASD--------DKTVKLWNR--N-------------------GQLLQTLTGHSSSVWGVAFSPDGQT-IA 73 (577)
T ss_dssp ECTTSSCEEEEET--------TSEEEEECT--T-------------------SCEEEEEECCSSCEEEEEECTTSSE-EE
T ss_pred ECCCCCEEEEEeC--------CCEEEEEEC--C-------------------CCEEEEEeCCCCCEEEEEECCCCCE-EE
Confidence 3578877776543 566788831 1 2233444 59999999999999995 99
Q ss_pred EEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCcee
Q 001248 376 VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV 455 (1114)
Q Consensus 376 tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~ 455 (1114)
+|+.|++|+|||.. ++.+. .+.+|...|.+++|+|||++|++++.|+.+++|+.......
T Consensus 74 s~~~d~~i~vWd~~-~~~~~-------------------~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~ 133 (577)
T 2ymu_A 74 SASDDKTVKLWNRN-GQLLQ-------------------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 133 (577)
T ss_dssp EEETTSCEEEEETT-SCEEE-------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE
T ss_pred EEeCCCEEEEEECC-CCEEE-------------------EEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee
Confidence 99999999999964 55544 37889999999999999999999999999999998764322
Q ss_pred eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeE
Q 001248 456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 535 (1114)
Q Consensus 456 ~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i 535 (1114)
...+|...|.++.|+|++. .+++++.++.+++|+. ..........|...|.++++++ ++.++++++.|+.|
T Consensus 134 ----~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v 204 (577)
T 2ymu_A 134 ----TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTV 204 (577)
T ss_dssp ----EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEE
T ss_pred ----eccCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEE
Confidence 4678999999999999999 6889999999999994 4556677788999999999754 55799999999999
Q ss_pred EEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccC
Q 001248 536 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 615 (1114)
Q Consensus 536 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 615 (1114)
++||.. .+....+..+...|.+++|+|++. ++++++.|+.|++||. +++.+..+..+
T Consensus 205 ~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~---------------------~l~~~~~d~~i~~w~~-~~~~~~~~~~~ 261 (577)
T 2ymu_A 205 KLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQ---------------------TIASASDDKTVKLWNR-NGQLLQTLTGH 261 (577)
T ss_dssp EEECTT-SCEEEEEECCSSCEEEEEECTTSS---------------------CEEEEETTSCEEEECT-TSCEEEEECCC
T ss_pred EEEeCC-CcEEEEEecCCCCEEEEEECCCCC---------------------EEEEEeCCCEEEEEeC-CCCEEEEEecC
Confidence 999964 344555666666666666665554 7999999999999996 56777777765
Q ss_pred CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccc
Q 001248 616 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA 695 (1114)
Q Consensus 616 ~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1114)
...|.+++|+|+++.+++++.|+.|++|+... +....+.+|...+..
T Consensus 262 --~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~~----------------------------- 308 (577)
T 2ymu_A 262 --SSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWG----------------------------- 308 (577)
T ss_dssp --SSCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEE-----------------------------
T ss_pred --CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeEE-----------------------------
Confidence 45799999999999999999999999999643 455566666543321
Q ss_pred ccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceE
Q 001248 696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH 775 (1114)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i 775 (1114)
..+.+++..+++++.|+.+++|+..... ...+ .+|...+.+++|+|+++.+++++.|+.+
T Consensus 309 ------------~~~~~~~~~l~t~~~d~~i~~w~~~~~~----~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~v 368 (577)
T 2ymu_A 309 ------------VAFSPDGQTIASASDDKTVKLWNRNGQH----LQTL----TGHSSSVWGVAFSPDGQTIASASDDKTV 368 (577)
T ss_dssp ------------EEECTTSSEEEEEETTSCEEEEETTSCE----EEEE----CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ------------EEECCCCCEEEEEeCCCeEEEEeCCCCe----eEEE----eCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 2234577889999999999999976421 1111 3478899999999999999999999999
Q ss_pred EEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccc
Q 001248 776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT 854 (1114)
Q Consensus 776 ~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~ 854 (1114)
++|+... ..+.. +. +|...|.+++|+||+++|++++ |+.|++||. +++.+..
T Consensus 369 ~~~~~~~-----------------------~~~~~-~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~ 421 (577)
T 2ymu_A 369 KLWNRNG-----------------------QLLQT-LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 421 (577)
T ss_dssp EEEETTC-----------------------CEEEE-EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEE
T ss_pred EEEcCCC-----------------------CEEEE-ec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEE
Confidence 9998431 11111 12 2888999999999999999998 899999996 5678888
Q ss_pred cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001248 855 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934 (1114)
Q Consensus 855 ~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~ 934 (1114)
+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||...
T Consensus 422 ~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~- 498 (577)
T 2ymu_A 422 LTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG- 498 (577)
T ss_dssp EECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-
T ss_pred ecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-
Confidence 999999999999999 8999999999999999996 5677889999999999999999999999999999999999654
Q ss_pred ccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEE
Q 001248 935 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1114)
+ .+..+.+|. ..|++++|+|||++|++ +.|+.|++||. +++++..+. +|.+.|++++|+|||++|+++
T Consensus 499 ~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~ 567 (577)
T 2ymu_A 499 Q-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVWGVAFSPDGQTIASA 567 (577)
T ss_dssp C-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEE
T ss_pred C-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--CCCCCEEEEEEcCCCCEEEEE
Confidence 2 334445555 48999999999999999 58899999996 577777776 899999999999999999999
Q ss_pred EcCCeEEEEE
Q 001248 1014 FLDATVCVFS 1023 (1114)
Q Consensus 1014 s~Dg~I~vwd 1023 (1114)
+.|++|++||
T Consensus 568 ~~D~~i~~Wd 577 (577)
T 2ymu_A 568 SSDKTVKLWN 577 (577)
T ss_dssp ETTSCEEEEC
T ss_pred eCCCEEEEeC
Confidence 9999999997
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-60 Score=632.74 Aligned_cols=597 Identities=15% Similarity=0.171 Sum_probs=489.7
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
...+|.+.|++++|||||++ |++|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~i~vw~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQR-IASCGADKTLQVFKAETGEKLL-------------------DIKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred EEecccccEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCEEE-------------------EeccCCCCEEEEEEecCC
Confidence 44469999999999999995 9999999999999999998776 377999999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
++||+++.|+.|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++.++.+|.+.|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence 999999999999999999998766 68899999999999997655589999999999999999999999999999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC-------------CCeeEEEEEecCCCeEEee--------
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-------------GRWCTTMAYSADGTRTYQG-------- 571 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~~g~~~~~~-------- 571 (1114)
.+++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|..++.+
T Consensus 747 ~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 747 NHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp EEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred EEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 9999865 5579999999999999999887655544321 2357788899998755443
Q ss_pred -------------ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeC
Q 001248 572 -------------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 638 (1114)
Q Consensus 572 -------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 638 (1114)
.+...+..++|+|+++++++++.+|.|++||+.++..+..+..| ...|.+++|+|+|+++++++.
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSSFLTASD 902 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEET
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCCCCEEEEEeC
Confidence 33456788999999999999999999999999999999888866 457999999999999999999
Q ss_pred CCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccc
Q 001248 639 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 718 (1114)
Q Consensus 639 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 718 (1114)
||.|++|++.+............. .....+....++
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~ 938 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEI--------------------------------------------DVVFQENETMVL 938 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEE--------------------------------------------EEEEETTEEEEE
T ss_pred CCeEEEEEccccceeeeeccccee--------------------------------------------eEEEcCCCcEEE
Confidence 999999998754211110000000 000112233344
Q ss_pred cccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCcccccccc
Q 001248 719 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 798 (1114)
Q Consensus 719 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 798 (1114)
.......+.++........ ......+.+++|+|+++.+++++.+|.|++|++..
T Consensus 939 ~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~---------------- 992 (1249)
T 3sfz_A 939 AVDNIRGLQLIAGKTGQID----------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---------------- 992 (1249)
T ss_dssp EEESSSSEEEEEESSCCEE----------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT----------------
T ss_pred EecCCcceEEEecCcceEE----------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC----------------
Confidence 4555566666665432111 11456799999999999999999999999998753
Q ss_pred ccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEE
Q 001248 799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 877 (1114)
Q Consensus 799 ~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~ 877 (1114)
+..... +. +|...|.+++|+|++++|++++ ||.|++||+.+++... +..|...|.+++|+| ++ .+++
T Consensus 993 ------~~~~~~-~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~ 1060 (1249)
T 3sfz_A 993 ------NRVFSS-GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLS 1060 (1249)
T ss_dssp ------TSCEEE-CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEE
T ss_pred ------Cceeee-cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEE
Confidence 222211 12 3889999999999999999998 9999999999887664 557899999999999 65 5678
Q ss_pred EeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceE
Q 001248 878 GMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957 (1114)
Q Consensus 878 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 957 (1114)
++.||.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++. +....+|. ..|.+
T Consensus 1061 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~~h~---~~v~~ 1132 (1249)
T 3sfz_A 1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELKGHN---GCVRC 1132 (1249)
T ss_dssp EESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCCCCS---SCEEE
T ss_pred EECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeeccCC---CcEEE
Confidence 89999999999999999999999999999999999999999999999999999988543 34445554 47999
Q ss_pred EEEccCCcEEEE-EeCCeEEEEEcCCCceeeeee-------cCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee
Q 001248 958 VQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV-------PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1114)
Q Consensus 958 v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~-------~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~ 1029 (1114)
++|+|||++|++ +.|+.|++||+.+++.+..+. ..+|...|++++|+|||++|++++ |.|++||+.+++.
T Consensus 1133 ~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp EEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBC
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCce
Confidence 999999999999 578999999999998877651 136889999999999999999885 9999999999998
Q ss_pred eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1030 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
+..+. +| ...+. +++|+| |+.+|++++.||.|++|++.+
T Consensus 1211 ~~~~~-------~~-~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1211 SQTFY-------TN-GTNLK--KIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp CCCCC-------CS-SCCCC--CCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred eeeee-------cc-CCccc--EEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 76654 22 22244 789999 689999999999999999853
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5e-58 Score=561.03 Aligned_cols=562 Identities=12% Similarity=0.145 Sum_probs=456.4
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCc----ceeEEeeeeeeccCCCCcccccccccCCCCC-eeEEEEcC
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPGVS-VNRVIWSP 430 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~-V~~l~~sp 430 (1114)
.|.+.|++++|||||++ |++++ ++.|+|||+.++ +... .+.+|... |.+++|+|
T Consensus 16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 48899999999999996 77777 889999999987 5554 47899999 99999999
Q ss_pred --CCCeEEEEeCCCeEEEEEccCCc-----eeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC----CCEEEEeCCCC
Q 001248 431 --DGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNG 499 (1114)
Q Consensus 431 --dg~~las~~~dg~i~iwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d----~~i~iwd~~~~ 499 (1114)
|+++||+|+.||.|+|||+.+++ .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| .+
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~ 150 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG 150 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence 99999999999999999998651 1223346788999999999999999 68888877 6788887 67
Q ss_pred cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCC---eeEEEEEecCCCeEEeeecccc
Q 001248 500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKRS 576 (1114)
Q Consensus 500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~~~~~~~~~~ 576 (1114)
+.+..+.+|...|.+++|++... .++++++.|+.|++||+.+.+....+..+.. .|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------- 218 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS----------- 218 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT-----------
T ss_pred CcceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCC-----------
Confidence 78899999999999999876542 3899999999999999988777666666665 56666655550
Q ss_pred eeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEe-c---cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 001248 577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI-D---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1114)
Q Consensus 577 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~ 652 (1114)
++++++++.|+.|++||+.+++.+..+ . .+ ...|.+++|+ ++.+|++++.||.|++||+.++ +
T Consensus 219 ---------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~ 285 (615)
T 1pgu_A 219 ---------GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTS-K 285 (615)
T ss_dssp ---------CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-E
T ss_pred ---------CCEEEEEeCCCeEEEEECCCCCEeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-c
Confidence 447999999999999999999999888 3 34 4579999999 9999999999999999999987 4
Q ss_pred ceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEec
Q 001248 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1114)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1114)
....+..+....... .....++++..+++++.++.+++|++.
T Consensus 286 ~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 286 CVQKWTLDKQQLGNQ--------------------------------------QVGVVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp EEEEEECCTTCGGGC--------------------------------------EEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEEcCCCCcccCc--------------------------------------eeEEEeCCCCeEEEEECCCCEEEEECC
Confidence 555554432110000 000112367889999999999999988
Q ss_pred cCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccC
Q 001248 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1114)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 812 (1114)
....... + .+|...|.+++| |+ +++++.||.|++|++. .+
T Consensus 328 ~~~~~~~-----~--~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~~---- 367 (615)
T 1pgu_A 328 HDEVLKT-----I--SGHNKGITALTV-NP---LISGSYDGRIMEWSSS-------------------------SM---- 367 (615)
T ss_dssp EEEEEEE-----E--CCCSSCEEEEET-TT---TEEEETTSCEEETTTT-------------------------EE----
T ss_pred CCcEEEE-----E--eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------------------------hh----
Confidence 6322111 1 348899999999 88 9999999999998753 01
Q ss_pred CCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 813 ~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
. ..|...|.++++ +++.++++++ |+.|++||+.+++... .+.+++|+| ++.+++++ .++.+++|++.+
T Consensus 368 ~-~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~ 436 (615)
T 1pgu_A 368 H-QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFT 436 (615)
T ss_dssp E-CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTT
T ss_pred c-CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccC
Confidence 1 238899999999 6677888877 9999999998765443 688999999 88888877 789999999999
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV- 969 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~- 969 (1114)
++.+..+. |...+++++|+ +++|++++. |+.|++||+.+++... ....+|. ..|.+++|+|+|++|++
T Consensus 437 ~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~ 506 (615)
T 1pgu_A 437 GDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAG 506 (615)
T ss_dssp CCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEE
T ss_pred Cceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEEc
Confidence 99888887 88999999999 889999999 9999999999854321 3333443 48999999999999999
Q ss_pred EeCCeEEEEEcCCCceeeeeecCC-CCcCeeEEEECC----------CCCEEEEEEcCCeEEEEEcCCC-eeeEEeCCCc
Q 001248 970 VHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSC----------DSQLVYACFLDATVCVFSAANL-KLRCRINPSA 1037 (1114)
Q Consensus 970 ~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~s~----------dg~~l~s~s~Dg~I~vwd~~~~-~~~~~~~~~~ 1037 (1114)
+.|+.|++||+.+++.+..+. + |...|++++|+| ++++|++++.||.|++||+.++ +.+..+.
T Consensus 507 ~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--- 581 (615)
T 1pgu_A 507 DVMGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--- 581 (615)
T ss_dssp ETTSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT---
T ss_pred CCCCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh---
Confidence 588999999999999988765 5 899999999999 9999999999999999999998 6776655
Q ss_pred ccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCC
Q 001248 1038 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1038 ~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
+|... |. +++|+| |+. |++++.||+|++|++.++
T Consensus 582 ----~h~~~-v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 582 ----AHKDG-VN--NLLWET-PST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp ----SSTTC-EE--EEEEEE-TTE-EEEEETTSCEEEEEEC--
T ss_pred ----cCccc-eE--EEEEcC-CCC-eEEecCCceEEEEeeecC
Confidence 33232 55 899999 577 999999999999999763
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-56 Score=562.58 Aligned_cols=621 Identities=11% Similarity=0.114 Sum_probs=437.0
Q ss_pred eEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 352 ~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
....+|.+.|++++|+|+|+ +||+|+.||+|+||+..+++... ...|...|.+++|+|
T Consensus 11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp- 68 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK- 68 (902)
T ss_dssp EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence 35567999999999999999 59999999999999998766543 234788999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce---------
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--------- 502 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~--------- 502 (1114)
|++|++++.|++|+|||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++||+.++++.
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence 8899999999999999999988765 343 678999999999999 7999999999999999988754
Q ss_pred --eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCC--eEEeeeccccee
Q 001248 503 --YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQGFRKRSLG 578 (1114)
Q Consensus 503 --~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~--~~~~~~~~~~v~ 578 (1114)
..+.+|.+.|.+++|++.. +..+++|+.|+.| +||+++......+..+... ..+.+. .....++...+.
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~h~~~V~ 215 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRD-IGTVLISYEYVTL-TYSLVENEIKQSFIYELPP-----FAPGGDFSEKTNEKRTPKVI 215 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTE-EEEEEEECSSCEE-EEETTTTEEEEEECCCBCT-----TCCCSTTCCCTTSCBCCCEE
T ss_pred cccccccCCCCeEEEEEccCC-CCEEEEEeCCCcE-EEECCCCceEEEEecccCC-----cCCCcccccccccccCCCeE
Confidence 3446799999999998742 3689999999999 9999987666555443100 000000 000112234677
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCcceEEEec-----cC-----------CCCCCcCeEEEc----CCC-CEEEEEe
Q 001248 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----AD-----------GGLPASPRIRFN----KDG-CLLAVST 637 (1114)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~-----------~~~~~v~~~~~s----~d~-~~l~~~~ 637 (1114)
.++|+|++.+|++++.||.|++||+.+++++.... .+ .+...|.+++|+ |++ .+|++|+
T Consensus 216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 216 QSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 78888888899999999999999999998876421 12 123368899995 443 5677776
Q ss_pred CC-----CcEEEEEccCCcc-----------------ceeecc-ccccccccCCCCCCCCccchhhhhhhhccccccccc
Q 001248 638 ND-----NGIKILATSDGIR-----------------LLRTFE-NLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 694 (1114)
Q Consensus 638 ~d-----g~i~iwd~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1114)
.+ +.+.+|++..... ..+.+. .+...+. .+
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~--------~~------------------- 348 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIV--------NI------------------- 348 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEE--------EE-------------------
T ss_pred CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceE--------EE-------------------
Confidence 65 3788888531100 000000 0000000 00
Q ss_pred cccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCce
Q 001248 695 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI 774 (1114)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~ 774 (1114)
..............+...+++++.|+.+++|++..+...............|...|++++|++....
T Consensus 349 ----~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~--------- 415 (902)
T 2oaj_A 349 ----LPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNK--------- 415 (902)
T ss_dssp ----EECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHH---------
T ss_pred ----EECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHH---------
Confidence 0000000000011234467888889999999986432111100001111235678998888764432
Q ss_pred EEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcccc
Q 001248 775 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA 853 (1114)
Q Consensus 775 i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~ 853 (1114)
+|+...... ..+. ..+. +|...+.+++|+||+++|++|+ |++|++||+.++....
T Consensus 416 --~w~~~~~~~-----------------~~~~---~~l~--G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~ 471 (902)
T 2oaj_A 416 --LWLGALSAA-----------------QNKD---YLLK--GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD 471 (902)
T ss_dssp --HHHHHHHTT-----------------BCCC---CSCC--CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT
T ss_pred --HHHHHHhcc-----------------cCCC---Cccc--CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC
Confidence 233210000 0000 0122 3777888899999999999999 9999999998874321
Q ss_pred --cc---------CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc------------------------------
Q 001248 854 --TF---------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD------------------------------ 892 (1114)
Q Consensus 854 --~~---------~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~------------------------------ 892 (1114)
.+ .+|...|.+++|+| ++++||+|+.||+|+|||+.++
T Consensus 472 ~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (902)
T 2oaj_A 472 NASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVL 550 (902)
T ss_dssp TBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSE
T ss_pred CceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccc
Confidence 11 17888999999999 9999999999999999999876
Q ss_pred ---------------eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCC-CCCCCCCCce
Q 001248 893 ---------------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDT 956 (1114)
Q Consensus 893 ---------------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~ 956 (1114)
+++..+.+|.+.|++|+||||| +||+|+.|++|+|||+++........+..+. +|. ..|+
T Consensus 551 ~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~ 626 (902)
T 2oaj_A 551 VDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVT 626 (902)
T ss_dssp EECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEE
T ss_pred ccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceE
Confidence 2467889999999999999999 9999999999999999875432211123333 554 4799
Q ss_pred EEEEc-----cCC---cEEEE-EeCCeEEEEEc---CCCceeeeeecC---CCCcCeeEEE-EC----------------
Q 001248 957 RVQFH-----QDQ---IHFLV-VHETQLAIFET---TKLECVKQWVPR---ESSAPITHAT-FS---------------- 1004 (1114)
Q Consensus 957 ~v~fs-----pdg---~~l~~-~~d~~i~iwd~---~~~~~~~~~~~~---~h~~~v~~l~-~s---------------- 1004 (1114)
+++|+ ||| ++|++ +.|++|++||+ .+|++...+... .|.++|.+++ |+
T Consensus 627 sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~ 706 (902)
T 2oaj_A 627 CIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQN 706 (902)
T ss_dssp EEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHG
T ss_pred EEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhc
Confidence 99999 886 88888 68999999999 888887776521 1357888887 65
Q ss_pred ------CCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEE---E------ecCCCCCeEEEEeCC
Q 001248 1005 ------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI---A------AHPQEPNEFALGLSD 1069 (1114)
Q Consensus 1005 ------~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~------~~~~d~~~l~s~~~D 1069 (1114)
+++.+|+++ +..|+||++.+++..++.- +|. ..+. ++ . |++ ++..|++++.|
T Consensus 707 l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~-------~~~-~~~~--~v~~~~~~~~~~~~~-~~~~l~~~~~~ 773 (902)
T 2oaj_A 707 LSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF-------KYP-LAAT--GLSYISTVEKNNDRK-NLTVIITLEIN 773 (902)
T ss_dssp GGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC-------SSC-EEEE--EEEEEEEECSSSCEE-EEEEEEEEETT
T ss_pred cCCCCCCCeEEEEEe--ccceEEEeCccccceeeEc-------ccc-eeee--EEEEEEecccccccc-CceEEEEEeCC
Confidence 455555544 8899999999999887663 111 1122 33 4 666 57899999999
Q ss_pred CcEEEEeccCCC--CcccCCCC
Q 001248 1070 GGVHVFEPLESE--GKWGVPPP 1089 (1114)
Q Consensus 1070 g~v~vW~i~~~~--~~~~~~~~ 1089 (1114)
|+|++|++++.+ ..+..+++
T Consensus 774 g~i~~~s~p~l~~~~~~~~~~~ 795 (902)
T 2oaj_A 774 GHLRVFTIPDFKEQMSEHIPFP 795 (902)
T ss_dssp SEEEEEETTTCCEEEEEECSSC
T ss_pred CcEEEEECcchHHHhhccCCcc
Confidence 999999999999 44444443
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-56 Score=592.16 Aligned_cols=568 Identities=17% Similarity=0.223 Sum_probs=465.2
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|.+.|++++|||||++||+|+.||+|+|||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999998766 6889999999999999999 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
|+.+++.+.++.+|...|.+++|++..++.++++++.|+.|++||+.++.....+..|...|.+++|+|++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-------- 756 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-------- 756 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT--------
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC--------
Confidence 999999999999999999999998877778999999999999999999887777777777777777666665
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC-----------CCCCcCeEEEcCCCCEEEEEeCCCcEE
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----------GLPASPRIRFNKDGCLLAVSTNDNGIK 643 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~d~~~l~~~~~dg~i~ 643 (1114)
++++++.||.|++||+.+++....+.... ....+.+++|+|+|+.+++++ ++.+.
T Consensus 757 -------------~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~ 822 (1249)
T 3sfz_A 757 -------------LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVL 822 (1249)
T ss_dssp -------------EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEE
T ss_pred -------------EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEE
Confidence 79999999999999999988777664321 123688999999999999987 68999
Q ss_pred EEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCC
Q 001248 644 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 723 (1114)
Q Consensus 644 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 723 (1114)
+||..++........+|...+. ...+.+++..+++++.+
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~-----------------------------------------~~~~sp~~~~l~~~~~d 861 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQ-----------------------------------------YCDFSPYDHLAVIALSQ 861 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCC-----------------------------------------EEEECSSTTEEEEECSS
T ss_pred EEEecCCCceeEEcCCCCCceE-----------------------------------------EEEEcCCCCEEEEEeCC
Confidence 9999988444333334433222 12344677899999999
Q ss_pred CceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCc------------
Q 001248 724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA------------ 791 (1114)
Q Consensus 724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~------------ 791 (1114)
+.+++|++......... .+|...|.+++|+|+++.+++++.||.+++|++...........
T Consensus 862 g~v~vwd~~~~~~~~~~-------~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1249)
T 3sfz_A 862 YCVELWNIDSRLKVADC-------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE 934 (1249)
T ss_dssp SCEEEEETTTTEEEEEE-------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred CeEEEEEcCCCceeeec-------CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence 99999999864322211 34889999999999999999999999999999764321110000
Q ss_pred --c----ccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEE
Q 001248 792 --T----ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF 864 (1114)
Q Consensus 792 --~----~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~ 864 (1114)
. ....+.++...++..... +...+.+++++|+++++++|+ +|.|++||+.+++....+.+|...|++
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A 935 TMVLAVDNIRGLQLIAGKTGQIDYL------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp EEEEEEESSSSEEEEEESSCCEEEE------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred cEEEEecCCcceEEEecCcceEEEc------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence 0 000122333333333221 456799999999999999999 899999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccccc
Q 001248 865 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI 944 (1114)
Q Consensus 865 l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 944 (1114)
++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++ .+++++.|++|++||+.+++. ...
T Consensus 1009 l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~-----~~~ 1080 (1249)
T 3sfz_A 1009 IQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI-----ERD 1080 (1249)
T ss_dssp EEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC-----CEE
T ss_pred EEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce-----eEE
Confidence 99999 8999999999999999999998865 466899999999999975 678999999999999998654 233
Q ss_pred CCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 945 PTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 945 ~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
..+|. ..|.+++|+|||+++++ +.|+.|++||+.+++++..+. +|...|++++|+|||++|++++.||.|++||
T Consensus 1081 ~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1081 FTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp EECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred EcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 34444 47899999999999999 589999999999999887765 8899999999999999999999999999999
Q ss_pred cCCCeeeEEeCCCccc--CCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCC
Q 001248 1024 AANLKLRCRINPSAYL--PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1082 (1114)
Q Consensus 1024 ~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~ 1082 (1114)
+.+++.+..+.+.... ..+| ...+. +++|+| |+.+|++++ |.|++||+.+++.
T Consensus 1156 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1156 VSDGQLLHSCAPISVEEGTATH-GGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp SSSSCCCCCCCCCC-------C-CSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred CCCCceEEEecccccccccccc-CceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 9999988765321111 1122 22255 899999 689999885 9999999999884
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7e-55 Score=533.15 Aligned_cols=522 Identities=12% Similarity=0.156 Sum_probs=436.4
Q ss_pred eeEeccCCCC-ceEEEEcC--CCCeEEEEEecCCcEEEEEcCCc------ceeEEeeeeeeccCCCCcccccccccCCCC
Q 001248 351 VTRTLNQGSS-PMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSR------ERLVLRNFKVWDLGACSMPLQAALVKDPGV 421 (1114)
Q Consensus 351 ~~~~~~h~~~-v~~v~~sp--dg~~ll~tg~~dg~v~iwd~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 421 (1114)
.....+|.+. |++++|+| +|++ |++|+.||.|+|||+.++ +.... ..+.+|..
T Consensus 56 ~~~~~~h~~~~v~~~~~sp~~~~~~-l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 117 (615)
T 1pgu_A 56 VVQFTGHGSSVVTTVKFSPIKGSQY-LCSGDESGKVIVWGWTFDKESNSVEVNVK-----------------SEFQVLAG 117 (615)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCE-EEEEETTSEEEEEEEEEEGGGTEEEEEEE-----------------EEEECCSS
T ss_pred ceEEecCCCceEEEEEECcCCCCCE-EEEecCCCEEEEEeCCCCccccccccccc-----------------chhhcccc
Confidence 4445569999 99999999 9995 999999999999999765 21111 13667999
Q ss_pred CeeEEEEcCCCCeEEEEeCC----CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC
Q 001248 422 SVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 497 (1114)
.|.+++|+|+|++|++++.+ +.|.+|| +++.+. .+.+|...|.+++|+|+++. .+++++.|+.|++||+.
T Consensus 118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~ 191 (615)
T 1pgu_A 118 PISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQGP 191 (615)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEETT
T ss_pred cEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccEEEEEECCCCCc-EEEEEeCCCcEEEEeCC
Confidence 99999999999999999987 6888888 455444 68899999999999999985 58999999999999999
Q ss_pred CCcceeEeecccc---CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee-c---CCCCeeEEEEEecCCCeEEe
Q 001248 498 NGAKQYIFEGHEA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-E---APGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 498 ~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~---~~~~~v~~~~~s~~g~~~~~ 570 (1114)
+++.+..+.+|.. .|.+++|+++ ++.++++++.|+.|++||+.+.+....+ . .+...|.+++|+ ++
T Consensus 192 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~----- 264 (615)
T 1pgu_A 192 PFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS----- 264 (615)
T ss_dssp TBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS-----
T ss_pred CcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC-----
Confidence 9999999999999 9999998654 1579999999999999999988777666 4 566666666665 54
Q ss_pred eecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC--CCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
+++++++.|+.|++||+.+++.+..+..+.. ...+.++.|+ ++.++++++.||.|++||+.
T Consensus 265 ----------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 265 ----------------QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp ----------------SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETT
T ss_pred ----------------CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECC
Confidence 4799999999999999999999988876521 2346677775 89999999999999999998
Q ss_pred CCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeE
Q 001248 649 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 728 (1114)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 728 (1114)
++ +....+.+|...+... .. ++ +++++.|+.+++
T Consensus 328 ~~-~~~~~~~~~~~~v~~~-----------------------------------------~~-~~---l~~~~~dg~i~~ 361 (615)
T 1pgu_A 328 HD-EVLKTISGHNKGITAL-----------------------------------------TV-NP---LISGSYDGRIME 361 (615)
T ss_dssp EE-EEEEEECCCSSCEEEE-----------------------------------------ET-TT---TEEEETTSCEEE
T ss_pred CC-cEEEEEeCCCCCEEEE-----------------------------------------Ee-cC---cEEECCCCeEEE
Confidence 86 5666666665543321 11 22 899999999999
Q ss_pred EEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccc
Q 001248 729 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 808 (1114)
Q Consensus 729 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~ 808 (1114)
|++.. +. ..|...|.+++| +++..+++++.|+.+++|++.....
T Consensus 362 w~~~~---------~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~----------------------- 405 (615)
T 1pgu_A 362 WSSSS---------MH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF----------------------- 405 (615)
T ss_dssp TTTTE---------EE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC-----------------------
T ss_pred EEchh---------hc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc-----------------------
Confidence 99871 11 348899999999 6678899999999999998763221
Q ss_pred cccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC-CCcEEEE
Q 001248 809 TNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIY 887 (1114)
Q Consensus 809 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~-dg~v~iw 887 (1114)
...+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+ +++|++++. ||.|++|
T Consensus 406 ---------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~ 472 (615)
T 1pgu_A 406 ---------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQVF 472 (615)
T ss_dssp ---------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEEE
T ss_pred ---------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEEEE
Confidence 125778999999999999889999999999988888877 78889999998 679999999 9999999
Q ss_pred EcccceEE-EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC-CCCCCCCceEEEEcc---
Q 001248 888 NVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ--- 962 (1114)
Q Consensus 888 d~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~fsp--- 962 (1114)
|+.+++.. ..+.+|...|++++|+|++++|++++.|+.|++||+.+++. +....+ |. ..|.+++|+|
T Consensus 473 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~---~~v~~~~~sp~~~ 544 (615)
T 1pgu_A 473 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRT---SKINAISWKPAEK 544 (615)
T ss_dssp ETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCS---SCEEEEEECCCC-
T ss_pred ECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----eeEeecCCC---CceeEEEEcCccc
Confidence 99998766 77889999999999999999999999999999999998654 233333 43 4899999999
Q ss_pred -------CCcEEEE-EeCCeEEEEEcCCC-ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 963 -------DQIHFLV-VHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 963 -------dg~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
++++|++ +.|+.|++||+.++ +++..+. +|...|++++|+||++ |++++.||.|++|++.+
T Consensus 545 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 545 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred cccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999 57999999999998 6666654 8899999999999999 99999999999999875
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-52 Score=520.02 Aligned_cols=611 Identities=10% Similarity=0.041 Sum_probs=425.8
Q ss_pred CCChhhhhcccCCCCCccccccCcccccccccCCCCcCCCCcCCCCCCCCCcceeEeccCCCCceEEEEcCCCCeEEEEE
Q 001248 298 SGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVG 377 (1114)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~ll~tg 377 (1114)
+|++.+++.... +..|+||... ..+....+.|...|++++|+| |+ +|+++
T Consensus 26 spdg~~lAsgs~--------Dg~I~lw~~~--------------------~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~ 75 (902)
T 2oaj_A 26 DFTQNLLAIATV--------TGEVHIYGQQ--------------------QVEVVIKLEDRSAIKEMRFVK-GI-YLVVI 75 (902)
T ss_dssp ETTTTEEEEEET--------TSEEEEECST--------------------TCEEEEECSSCCCEEEEEEET-TT-EEEEE
T ss_pred CCCCCEEEEEeC--------CCEEEEEeCC--------------------CcEEEEEcCCCCCEEEEEEcC-CC-EEEEE
Confidence 466777666553 5677888321 122345567899999999999 88 59999
Q ss_pred ecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeee
Q 001248 378 TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 457 (1114)
Q Consensus 378 ~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~ 457 (1114)
+.|++|+|||+.+++.+.. +. |.+.|++++|+|++++|++|+.||+|++||+.+++....
T Consensus 76 s~D~~v~lWd~~~~~~~~~-------------------~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~ 135 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQKVLTT-------------------VF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF 135 (902)
T ss_dssp ETTCEEEEEETTTCSEEEE-------------------EE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ECcCeEEEEECCCCcEEEE-------------------Ec-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 9999999999999887653 22 567899999999999999999999999999998875311
Q ss_pred e--------EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc------------------ccC
Q 001248 458 H--------LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH------------------EAP 511 (1114)
Q Consensus 458 ~--------~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h------------------~~~ 511 (1114)
. ..+.+|.+.|.+++|+|++.. .+++|+.|++| +||+++++++..+.+| ...
T Consensus 136 ~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~-~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~ 213 (902)
T 2oaj_A 136 KLDNLQKSSFFPAARLSPIVSIQWNPRDIG-TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK 213 (902)
T ss_dssp EECCHHHHHTCSSSCCCCCCEEEEETTEEE-EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCC
T ss_pred eeccccccccccccCCCCeEEEEEccCCCC-EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCC
Confidence 0 235689999999999997544 68899999999 9999999988888766 577
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec-----CC-------------CCeeEEEEEecCCCeEEeeec
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-----AP-------------GRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~-------------~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
|.+++|++ +|.+|++++.||.|++||+++++.+.... .+ ...|.+++|++..
T Consensus 214 V~~v~fsp--dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~-------- 283 (902)
T 2oaj_A 214 VIQSLYHP--NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCEN-------- 283 (902)
T ss_dssp EEEEEECT--TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECS--------
T ss_pred eEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecC--------
Confidence 99999865 46899999999999999998876544211 11 2234444443221
Q ss_pred ccceeEEEecCCC-CEEEEEeCC-----CeEEEEECC------------------CcceEEEeccCCCCCCcCeEEEcC-
Q 001248 574 KRSLGVVQFDTTK-NRFLAAGDD-----FSIKFWDMD------------------SVQLLTSIDADGGLPASPRIRFNK- 628 (1114)
Q Consensus 574 ~~~v~~~~~~~~~-~~l~~~~~d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~~~~s~- 628 (1114)
+|++ ..+++|+.+ ..+.+|++. +++....+... +...+.++.+.+
T Consensus 284 ---------~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 353 (902)
T 2oaj_A 284 ---------NPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPR 353 (902)
T ss_dssp ---------STTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCS
T ss_pred ---------CCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCC
Confidence 2332 346666655 378898842 22334444321 123577777755
Q ss_pred ---------CCCEEEEEeCCCcEEEEEccCCccceeecccc------ccccccCCCCCCCCccchhhhhhhhcccccccc
Q 001248 629 ---------DGCLLAVSTNDNGIKILATSDGIRLLRTFENL------AYDASRTSENSKPTISPISAAAAAAATSAGLAD 693 (1114)
Q Consensus 629 ---------d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1114)
+...+++++.||.|++|++.++.........+ ...+... +|
T Consensus 354 ~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~------~~------------------ 409 (902)
T 2oaj_A 354 QSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS------MA------------------ 409 (902)
T ss_dssp SCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE------EE------------------
T ss_pred CCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE------EE------------------
Confidence 34578899999999999997763222211111 1100000 00
Q ss_pred ccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCc
Q 001248 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 773 (1114)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 773 (1114)
.+...++|+......... ..+-.+|...+..++|+|+++.+++++.|+
T Consensus 410 ----------------------------s~~~~~~w~~~~~~~~~~----~~~l~G~~~~v~sv~~spdg~~laSgs~Dg 457 (902)
T 2oaj_A 410 ----------------------------ASVPNKLWLGALSAAQNK----DYLLKGGVRTKRQKLPAEYGTAFITGHSNG 457 (902)
T ss_dssp ----------------------------EEEEHHHHHHHHHTTBCC----CCSCCCSBCCCCCCCCCSEEEEEEEEETTS
T ss_pred ----------------------------EEcCHHHHHHHHhcccCC----CCcccCCcCCCCcccccccCcEEEEecCCC
Confidence 001112232211000000 011134777788899999999999999999
Q ss_pred eEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCc--
Q 001248 774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK-- 850 (1114)
Q Consensus 774 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~-- 850 (1114)
+|++||+....... . .++... +.. ..+.+|...|.+++|+||+++||+|+ ||+|+|||+.+++
T Consensus 458 tVrlWd~~~g~~~~-~--------~~~~~~---l~~--~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~ 523 (902)
T 2oaj_A 458 SVRIYDASHGDIQD-N--------ASFEVN---LSR--TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFY 523 (902)
T ss_dssp EEEEEESSCCTTTT-T--------BCEEEE---HHH--HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-
T ss_pred cEEEEECCCccccC-C--------ceEEee---chh--hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcccc
Confidence 99999987542110 0 000000 000 00124889999999999999999999 9999999998663
Q ss_pred -------------------------------------------cccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 851 -------------------------------------------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 851 -------------------------------------------~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
++.++.+|...|++++||| || +||+|+.|++|+||
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lw 601 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLI 601 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEE
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEE
Confidence 2566788999999999999 88 99999999999999
Q ss_pred EcccceEEE-----eec-ccccCeeEEEEc-----CCC---CEEEEEeCCCcEEEEeC---CCCccccccccccCCCCCC
Q 001248 888 NVRVDEVKS-----KLK-GHSKRITGLAFS-----HAL---NVLVSSGADSQLCVWSS---DGWEKQKNRFLQIPTGRTP 950 (1114)
Q Consensus 888 d~~~~~~~~-----~l~-~h~~~V~~l~~s-----~d~---~~l~s~s~D~~v~iwd~---~~~~~~~~~~~~~~~~~~~ 950 (1114)
|+.++..+. .+. +|.+.|++|+|+ ||| ++|++|+.|++|++||+ .+++. ...+.+|..
T Consensus 602 d~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~-----~~~~~~~~~ 676 (902)
T 2oaj_A 602 DRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF-----DVQLMDITN 676 (902)
T ss_dssp ETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE-----EEEEEEEEE
T ss_pred ECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE-----EEEecCcee
Confidence 998877653 343 899999999999 885 89999999999999999 55442 222222221
Q ss_pred --CCCCceEEE-Ec----------------------cCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEE---E
Q 001248 951 --TAQSDTRVQ-FH----------------------QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHA---T 1002 (1114)
Q Consensus 951 --~~~~i~~v~-fs----------------------pdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l---~ 1002 (1114)
..+.|..++ |+ ++|..|+++ +..+++|++.++++.+... .|...+.++ .
T Consensus 677 ~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~~--~~~~~~~~v~~~~ 753 (902)
T 2oaj_A 677 VTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKGF--KYPLAATGLSYIS 753 (902)
T ss_dssp CCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEEC--SSCEEEEEEEEEE
T ss_pred cCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeEc--ccceeeeEEEEEE
Confidence 013555555 65 456555554 8899999999999987764 455566665 5
Q ss_pred ------ECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe
Q 001248 1003 ------FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 1003 ------~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
|++++..|++++.||.|++|++.+++.+..+........ . .....+|.+ .|+.++-.+
T Consensus 754 ~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~~----~--~~~~~~~~~-~G~~~~~~~ 817 (902)
T 2oaj_A 754 TVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAA----K--YITESSVLR-NGDIAIRVS 817 (902)
T ss_dssp EECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCCH----H--HHTTCEECT-TSCEEEECS
T ss_pred eccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCccccc----c--cccceEEcC-CCCEEEEeC
Confidence 788999999999999999999999999988773221110 0 111355666 577666554
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.8e-45 Score=465.31 Aligned_cols=464 Identities=17% Similarity=0.225 Sum_probs=372.4
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
.+|.+.|++++|||+|++ |++|+.||.|+|||+.+++.+. .+.+|.+.|.+++|+|+|++
T Consensus 10 ~~h~~~v~~i~~sp~~~~-la~~~~~g~v~iwd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~ 69 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQVEVR-------------------SIQVTETPVRAGKFIARKNW 69 (814)
T ss_dssp EEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGGGTE
T ss_pred ecCCCceEEEEECCCCCE-EEEEeCCCEEEEEECCCCceEE-------------------EEecCCCcEEEEEEeCCCCE
Confidence 349999999999999995 9999999999999999988766 36789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeeccccCEE
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVY 513 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~ 513 (1114)
|++|+.||.|+|||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|++||+.++ .....+.+|...|.
T Consensus 70 l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 144 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (814)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE
T ss_pred EEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE
Confidence 9999999999999999988665 6788999999999999999 7999999999999999987 66788899999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecC--CCCEEEE
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT--TKNRFLA 591 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~--~~~~l~~ 591 (1114)
+++|++. ++..+++++.||.|++||+.+......+..+. ...+..++|+| +++++++
T Consensus 145 ~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~~~l~~ 203 (814)
T 3mkq_A 145 CVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------------------ERGVNYVDYYPLPDKPYMIT 203 (814)
T ss_dssp EEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCC--------------------TTCCCEEEECCSTTCCEEEE
T ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCC--------------------CCCEEEEEEEECCCCCEEEE
Confidence 9998762 45799999999999999998766555444332 12344455555 5668999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCC
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1114)
++.||.|++||+.+++.+..+..+. ..|.+++|+|++.++++++.||.|++||..++ .....+.
T Consensus 204 ~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~------------- 267 (814)
T 3mkq_A 204 ASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN------------- 267 (814)
T ss_dssp ECTTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC-------------
T ss_pred EeCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee-------------
Confidence 9999999999999999998887664 47999999999999999999999999998776 2222221
Q ss_pred CCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccc
Q 001248 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 751 (1114)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 751 (1114)
.+.
T Consensus 268 -----------------------------------------------------------------------------~~~ 270 (814)
T 3mkq_A 268 -----------------------------------------------------------------------------VGL 270 (814)
T ss_dssp -----------------------------------------------------------------------------CSS
T ss_pred -----------------------------------------------------------------------------cCC
Confidence 145
Q ss_pred cceEEEEEccCccee-eecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC
Q 001248 752 TKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~ 830 (1114)
..+.+++|+|++..+ ++.+.++.+.+|++. .....+.++|++
T Consensus 271 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~g 313 (814)
T 3mkq_A 271 ERSWCIATHPTGRKNYIASGFDNGFTVLSLG-------------------------------------NDEPTLSLDPVG 313 (814)
T ss_dssp SSEEEEEECTTCGGGEEEEEETTEEEEEECS-------------------------------------CCSCCEEECSSS
T ss_pred CcEEEEEEccCCCceEEEEEeCCCEEEEEcC-------------------------------------CCCceeEECCCC
Confidence 678999999998754 666667778888643 123457888999
Q ss_pred CEEEEEe-CC---eEE------EEEcCCCccc----cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 831 SYVMSAS-GG---KIS------LFNMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 831 ~~l~~~~-dg---~i~------iwd~~~~~~~----~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
+.+++++ +. .+. .|++..+... ..+..+...+.+++|+| +|++|++++ ||.+.+|++......
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~~- 390 (814)
T 3mkq_A 314 KLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRNK- 390 (814)
T ss_dssp EEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE-
T ss_pred CEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECcccccc-
Confidence 9998876 32 122 2333333322 22345667799999999 999999998 899999998755432
Q ss_pred eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC---cEEEE-EeC
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---IHFLV-VHE 972 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg---~~l~~-~~d 972 (1114)
+.+.|++++|+||+++|++++.|++|++|+.-. ++. ..+..++|+||| .+|++ +.|
T Consensus 391 ----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-------------~~~---~~v~~~~~s~dg~~~~~l~~~~~d 450 (814)
T 3mkq_A 391 ----AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-------------EVT---SWSVPMHSAIDRLFSGALLGVKSD 450 (814)
T ss_dssp ----EEEECSEEEECTTSSCEEEECTTCCEEEEETTE-------------ECT---TCCCCCSSCCCEEECSSSEEEEET
T ss_pred ----CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-------------Ccc---ceEEcCCcCccceecceEEEEecC
Confidence 456789999999999999999999999996432 111 256788899998 45555 799
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEE------EcCCeEEEE
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC------FLDATVCVF 1022 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~------s~Dg~I~vw 1022 (1114)
+.|++||+.+++.+..+. .|.. .++|+|||++|+++ +.++.+.+|
T Consensus 451 ~~v~~~d~~~~~~~~~~~--~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 451 GFVYFFDWDNGTLVRRID--VNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp TEEEEECTTTCCEEEEES--SCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred CEEEEEECCcCcEEEEEe--cCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 999999999999988875 3343 99999999999999 555555444
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-43 Score=448.95 Aligned_cols=467 Identities=16% Similarity=0.209 Sum_probs=374.7
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|.+.|.+++|||||++||+|+.||.|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 478899999999999999999999999999999999988666 6779999999999999999 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
|+.+++.+..+.+|.+.|.+++|++ ++.+|++++.||.|++||+.+. .....+..+...+.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~--------- 151 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--------- 151 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT---------
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC---------
Confidence 9999999999999999999999865 4579999999999999999876 334455566666666666651
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC--CCCEEEEEeCCCcEEEEEccCCc
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
+++.+++++.||.|++||+.++.....+..+. ...+.+++|+| ++.++++++.||.|++||..++
T Consensus 152 -----------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~- 218 (814)
T 3mkq_A 152 -----------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK- 218 (814)
T ss_dssp -----------EEEEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-
T ss_pred -----------CCCEEEEEeCCCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-
Confidence 33479999999999999999888877776543 24789999999 9999999999999999998776
Q ss_pred cceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEe
Q 001248 652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1114)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1114)
.....+.
T Consensus 219 ~~~~~~~------------------------------------------------------------------------- 225 (814)
T 3mkq_A 219 SCVATLE------------------------------------------------------------------------- 225 (814)
T ss_dssp EEEEEEE-------------------------------------------------------------------------
T ss_pred cEEEEEc-------------------------------------------------------------------------
Confidence 2222221
Q ss_pred ccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccccc
Q 001248 732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 811 (1114)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 811 (1114)
+|...|.+++|+|++..+++++.||.|++|++.. +.....
T Consensus 226 -----------------~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~----------------------~~~~~~- 265 (814)
T 3mkq_A 226 -----------------GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----------------------YKVEKT- 265 (814)
T ss_dssp -----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT----------------------CSEEEE-
T ss_pred -----------------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------CcEEEE-
Confidence 2567899999999999999999999999998753 222211
Q ss_pred CCCCCCCCCccEEEEeeCCC--EEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCc---EE-
Q 001248 812 VTDSNPEEAVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS---IQ- 885 (1114)
Q Consensus 812 ~~~~~~~~~v~~v~~s~d~~--~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~---v~- 885 (1114)
+. .+...+.+++|+|+++ +++++.++.+.+|++.... ..++++| ++.++++++.+.. +.
T Consensus 266 ~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~g~~~~~~~~~~~~~~~~~ 330 (814)
T 3mkq_A 266 LN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE------------PTLSLDP-VGKLVWSGGKNAAASDIFT 330 (814)
T ss_dssp EC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS------------CCEEECS-SSEEEEECCTTSCTTCEEE
T ss_pred ee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC------------ceeEECC-CCCEEEECcccccceeeee
Confidence 11 2677899999999998 5777779999999976532 3467888 8889988876653 11
Q ss_pred -----EEEcccceE----EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCce
Q 001248 886 -----IYNVRVDEV----KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 956 (1114)
Q Consensus 886 -----iwd~~~~~~----~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 956 (1114)
.|++..+.. ...+..|...+.+++|+|+|++|++++ |+.+.+|++....... .+.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~-------------~~~i~ 396 (814)
T 3mkq_A 331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA-------------FGKCQ 396 (814)
T ss_dssp EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-------------EEECS
T ss_pred eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC-------------CCceE
Confidence 123333322 234566778899999999999999998 8999999986532111 13578
Q ss_pred EEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCC---CEEEEEEcCCeEEEEEcCCCeeeEE
Q 001248 957 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCR 1032 (1114)
Q Consensus 957 ~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~s~Dg~I~vwd~~~~~~~~~ 1032 (1114)
+++|+|||++++++ .++.+++|+.. .+|...+.+++|+||| ++|++++.|+.|++||+.+++.+..
T Consensus 397 ~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~ 466 (814)
T 3mkq_A 397 DFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRR 466 (814)
T ss_dssp EEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEE
T ss_pred EEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEE
Confidence 99999999999995 78999999632 2567789999999999 6889999999999999999999988
Q ss_pred eCCCcccCCCCCCCCccceEEEecCCCCCeEEEE------eCCCcEEEEe
Q 001248 1033 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG------LSDGGVHVFE 1076 (1114)
Q Consensus 1033 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~------~~Dg~v~vW~ 1076 (1114)
+. +| .. .+.|+| |+++|+++ +.++.+.+|-
T Consensus 467 ~~-------~~----~~--~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 467 ID-------VN----AK--DVIWSD-NGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp ES-------SC----EE--EEEECT-TSSEEEEEECCCSSCSCSEEEEEE
T ss_pred Ee-------cC----CC--EEEEcC-CCCEEEEEEcCcccCCceEEEEEe
Confidence 77 21 11 689999 68999999 5555555543
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.4e-43 Score=403.57 Aligned_cols=306 Identities=16% Similarity=0.311 Sum_probs=262.2
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
..+|.+.|++++|+|+++ +|++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+|+
T Consensus 104 l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~ 163 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGK 163 (410)
T ss_dssp EECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSS
T ss_pred ecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCC
Confidence 446999999999999999 49999999999999999987765 4789999999999999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEE
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1114)
+|++|+.|++|+|||+.+++.+. ++.+|...|.+++|+|++. ++++|+.|++|++||+.++.++.++.+|...|.
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~ 238 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEE
Confidence 99999999999999999987665 7889999999999999999 799999999999999999999999999999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
+++++ +++.++++++.|+.|++||+.+......+..|...|.+++|+|++......... ..........+.++++|+
T Consensus 239 ~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 239 MVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp EEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEEE
T ss_pred EEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-cccccccCCCCCEEEEEe
Confidence 99975 456899999999999999999998888899999999999999986521111110 111122334577899999
Q ss_pred CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCC
Q 001248 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP 673 (1114)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1114)
.|+.|++||+.++.++..+.+|. ..|.+++|+|+|++|++++.||.|++||..++ +....+.
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~--------------- 377 (410)
T 1vyh_C 316 RDKTIKMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLN--------------- 377 (410)
T ss_dssp TTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEE---------------
T ss_pred CCCeEEEEECCCCceEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEc---------------
Confidence 99999999999999999988764 47999999999999999999999999998766 2222221
Q ss_pred CccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccc
Q 001248 674 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 753 (1114)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 753 (1114)
+|...
T Consensus 378 ---------------------------------------------------------------------------~h~~~ 382 (410)
T 1vyh_C 378 ---------------------------------------------------------------------------AHEHF 382 (410)
T ss_dssp ---------------------------------------------------------------------------CCSSC
T ss_pred ---------------------------------------------------------------------------CCCCc
Confidence 26778
Q ss_pred eEEEEEccCcceeeecccCceEEEEee
Q 001248 754 ISRLIFTNSGNAILALASNAIHLLWKW 780 (1114)
Q Consensus 754 i~~l~~s~~~~~l~~~~~dg~i~vw~~ 780 (1114)
|.+++|+|++..|++++.||.|++|++
T Consensus 383 v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 383 VTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999999999975
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-39 Score=370.55 Aligned_cols=306 Identities=21% Similarity=0.350 Sum_probs=260.3
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
+.+|.++|++++|+|++++|++|+.||+|+|||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 67899999999999999999999999999999999988665 7889999999999999999 899999999999999
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeeccc
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~ 575 (1114)
+.+++++.++.+|...|.+++|++ ++.+|++++.|++|++||++++.....+..|...|..+.+++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~--------- 247 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT--------- 247 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS---------
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC---------
Confidence 999999999999999999999876 457999999999999999998887777777776666666665554
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcccee
Q 001248 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR 655 (1114)
Q Consensus 576 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~ 655 (1114)
++++++.|+.|++||+.+++....+..|. ..|.+++|+|++.+..
T Consensus 248 ------------~l~s~s~D~~v~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~--------------------- 292 (410)
T 1vyh_C 248 ------------LIASCSNDQTVRVWVVATKECKAELREHR--HVVECISWAPESSYSS--------------------- 292 (410)
T ss_dssp ------------EEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECCSCGGGG---------------------
T ss_pred ------------EEEEEcCCCeEEEEECCCCceeeEecCCC--ceEEEEEEcCcccccc---------------------
Confidence 79999999999999999988888776654 3677787777542100
Q ss_pred eccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCC
Q 001248 656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS 735 (1114)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~ 735 (1114)
+.
T Consensus 293 -~~----------------------------------------------------------------------------- 294 (410)
T 1vyh_C 293 -IS----------------------------------------------------------------------------- 294 (410)
T ss_dssp -GG-----------------------------------------------------------------------------
T ss_pred -hh-----------------------------------------------------------------------------
Confidence 00
Q ss_pred CCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCC
Q 001248 736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS 815 (1114)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~ 815 (1114)
...+
T Consensus 295 ----------------------------------~~~~------------------------------------------ 298 (410)
T 1vyh_C 295 ----------------------------------EATG------------------------------------------ 298 (410)
T ss_dssp ----------------------------------GCCS------------------------------------------
T ss_pred ----------------------------------hhcc------------------------------------------
Confidence 0000
Q ss_pred CCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE
Q 001248 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1114)
........++.+|++|+ |++|++||+.++.++..+.+|...|++++|+| ++++|++|+.||.|++||+.++++
T Consensus 299 -----~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~ 372 (410)
T 1vyh_C 299 -----SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRC 372 (410)
T ss_dssp -----CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCC
T ss_pred -----ccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce
Confidence 00001123567888888 89999999999999999999999999999999 999999999999999999999999
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
+..+.+|...|++++|+|++.+|++|+.|++|++|++.
T Consensus 373 ~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999999999999999863
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=351.58 Aligned_cols=288 Identities=18% Similarity=0.311 Sum_probs=238.8
Q ss_pred ccCCCCCeeEEEEcCC----CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 416 VKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spd----g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+++.. ....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 6789999999999985 679999999999999999876532 3346889999999999999999 79999999999
Q ss_pred EEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee
Q 001248 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
++||+.+++.+..+..|...+.+++|++ ++++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g------------------------------------------ 140 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATG------------------------------------------ 140 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEE------------------------------------------
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEE------------------------------------------
Confidence 9999999988888877766666555533 33444444
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
+.++.|++|++.+++....+..+. ..+.+++|+|+|++|++++.||.|++||+.++
T Consensus 141 ---------------------~~dg~v~i~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~- 196 (321)
T 3ow8_A 141 ---------------------THVGKVNIFGVESGKKEYSLDTRG--KFILSIAYSPDGKYLASGAIDGIINIFDIATG- 196 (321)
T ss_dssp ---------------------CTTSEEEEEETTTCSEEEEEECSS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred ---------------------cCCCcEEEEEcCCCceeEEecCCC--ceEEEEEECCCCCEEEEEcCCCeEEEEECCCC-
Confidence 445555555555555555554443 36889999999999999999999999998765
Q ss_pred cceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEe
Q 001248 652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1114)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1114)
+.+..+.
T Consensus 197 ~~~~~~~------------------------------------------------------------------------- 203 (321)
T 3ow8_A 197 KLLHTLE------------------------------------------------------------------------- 203 (321)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred cEEEEEc-------------------------------------------------------------------------
Confidence 1111110
Q ss_pred ccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccccc
Q 001248 732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 811 (1114)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 811 (1114)
T Consensus 204 -------------------------------------------------------------------------------- 203 (321)
T 3ow8_A 204 -------------------------------------------------------------------------------- 203 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 812 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 812 ~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
+|...|.+++|+|++++|++++ |++|++||+.+++....+.+|...|.+++|+| ++.+|++|+.||+|++||+.
T Consensus 204 ----~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 204 ----GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp ----CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred ----ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCC
Confidence 1666788899999999999998 89999999999999999999999999999999 89999999999999999999
Q ss_pred cceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 891 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
+++++..+.+|.+.|++++|+|++++|++++.|++|++||..
T Consensus 279 ~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999999999963
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.5e-38 Score=353.03 Aligned_cols=295 Identities=18% Similarity=0.284 Sum_probs=254.1
Q ss_pred eeEec-cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 351 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 351 ~~~~~-~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
..+.+ +|.+.|+|++|+||+++ |++|+.||+|+|||..+++.... +..|...|.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~-l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~s 115 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRR-IVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAYA 115 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEEC
Confidence 33444 59999999999999995 99999999999999998877652 56688899999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCce---eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDE---VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~---~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 506 (1114)
|+|++||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .+++++.|++|++||+++++++.++.
T Consensus 116 p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 9999999999999999999875421 122335778999999999999999 79999999999999999999999999
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
+|...|.+++|++++++.+|++|+.||.|++||+++......+..|...|.+++|+|++.
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-------------------- 253 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD-------------------- 253 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--------------------
T ss_pred CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC--------------------
Confidence 999999999999888888999999999999999999887777777777777766666654
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccccccccc
Q 001248 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 666 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 666 (1114)
++++++.|++|++||+++++.+..+..+.....+.+++|+|+|.+|++++.|+.|++||+.++. .+..+
T Consensus 254 -~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~l--------- 322 (354)
T 2pbi_B 254 -AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS-RVSIL--------- 322 (354)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEE---------
T ss_pred -EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc-eEEEE---------
Confidence 7999999999999999998888777655544567899999999999999999999999987762 22222
Q ss_pred CCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccC
Q 001248 667 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 746 (1114)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~ 746 (1114)
T Consensus 323 -------------------------------------------------------------------------------- 322 (354)
T 2pbi_B 323 -------------------------------------------------------------------------------- 322 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceEEEEEccCcceeeecccCceEEEEe
Q 001248 747 ENLRATKISRLIFTNSGNAILALASNAIHLLWK 779 (1114)
Q Consensus 747 ~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~ 779 (1114)
.+|...|.+++|+|+|++|++++.|+.|+||+
T Consensus 323 -~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 323 -FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 12778899999999999999999999999995
No 17
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.6e-38 Score=350.76 Aligned_cols=292 Identities=20% Similarity=0.320 Sum_probs=251.8
Q ss_pred eeEec-cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 351 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 351 ~~~~~-~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
....+ +|.+.|++++|+|||++ |++|+.||+|+|||+.+++.+. .+..|...|.+++|+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~-l~s~s~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~~~~s 106 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRL-LLSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAYA 106 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSE-EEEEETTTEEEEEETTTCCEEE-------------------EEECSSSCEEEEEEC
T ss_pred hheeecCCCCceEEEEECCCCCE-EEEEeCCCcEEEEECCCCCcce-------------------EeecCCccEEEEEEC
Confidence 34444 59999999999999995 9999999999999999988765 366789999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCce-eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 508 (1114)
|+|++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+.++.+|
T Consensus 107 ~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h 183 (340)
T 1got_B 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCC
Confidence 9999999999999999999987642 233346789999999999998875 889999999999999999999999999
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
.+.|.+++|++ ++.++++|+.|+.|++||+++......+..|...|.+++|+|++. +
T Consensus 184 ~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~---------------------~ 240 (340)
T 1got_B 184 TGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN---------------------A 240 (340)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS---------------------E
T ss_pred CCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC---------------------E
Confidence 99999999865 557999999999999999998877777777777676666666654 7
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCC
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 668 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1114)
|++++.|+.|++||+++++.+..+..+.....|.+++|+|+|++|++|+.||.|++||+.++ .....+
T Consensus 241 l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~----------- 308 (340)
T 1got_B 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL----------- 308 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEE-----------
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEe-----------
Confidence 99999999999999999988888765554557899999999999999999999999998766 222222
Q ss_pred CCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcc
Q 001248 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1114)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1114)
.
T Consensus 309 -------------------------------------------------------------------------------~ 309 (340)
T 1got_B 309 -------------------------------------------------------------------------------A 309 (340)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------e
Confidence 1
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEe
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWK 779 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~ 779 (1114)
+|...|.+++|+|++..|++++.|+.|+||+
T Consensus 310 ~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 310 GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 2778899999999999999999999999995
No 18
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-38 Score=363.87 Aligned_cols=339 Identities=15% Similarity=0.203 Sum_probs=272.1
Q ss_pred cCCCCCeeEEEEcCCCC-eEEEEeCCCeEEEEEc----cCCce------eeee-Eeec------cccCCeeEEEecCCCC
Q 001248 417 KDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSY----HGGDE------VRQH-LEID------AHVGGVNDIAFSHPNK 478 (1114)
Q Consensus 417 ~~h~~~V~~l~~spdg~-~las~~~dg~i~iwd~----~~~~~------~~~~-~~l~------~h~~~V~~v~~s~d~~ 478 (1114)
..|.+.|.+++|+|+|+ +||+|+.||.|++||+ .+++. .... ..+. +|...|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45668999999999999 9999999999999999 87772 2211 1111 2688999999999999
Q ss_pred eeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCe---
Q 001248 479 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW--- 555 (1114)
Q Consensus 479 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~--- 555 (1114)
+|++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+.+......+..+...
T Consensus 122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 799999999999999 78888999999999999999865 5579999999999999999987777666655443
Q ss_pred eEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEE
Q 001248 556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 635 (1114)
Q Consensus 556 v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 635 (1114)
+....+.+++. .+..+.|+++ ..+++++.++.|++||+.+++.+..+..+ ...|.+++|+|++++|++
T Consensus 197 ~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 197 INAENHSGDGS---------LGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGH--HGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp ---------CC---------CBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCC--SSCEEEEEEETTTTEEEE
T ss_pred eeeccccCCcc---------eeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccC--CCceEEEEECCCCCEEEE
Confidence 11111111111 2444555554 34889999999999999999988888765 447999999999999999
Q ss_pred EeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCc
Q 001248 636 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 715 (1114)
Q Consensus 636 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1114)
++.||.|++||+.++. ....+
T Consensus 265 ~~~d~~i~i~d~~~~~-~~~~~---------------------------------------------------------- 285 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGN-SQNCF---------------------------------------------------------- 285 (425)
T ss_dssp EETTSCEEEECSSSBS-CSEEE----------------------------------------------------------
T ss_pred EcCCCEEEEEECCCCc-cceEe----------------------------------------------------------
Confidence 9999999999876541 11000
Q ss_pred ccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccc
Q 001248 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 795 (1114)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1114)
T Consensus 286 -------------------------------------------------------------------------------- 285 (425)
T 1r5m_A 286 -------------------------------------------------------------------------------- 285 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcE
Q 001248 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 874 (1114)
Q Consensus 796 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~ 874 (1114)
. .|...|.+++|+|++ ++++++ |+.|++||+.+++.+..+..|...|.+++|+| ++++
T Consensus 286 -----------------~--~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 344 (425)
T 1r5m_A 286 -----------------Y--GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQK 344 (425)
T ss_dssp -----------------C--CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSE
T ss_pred -----------------c--CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCE
Confidence 0 155667788888888 777777 89999999998888888888999999999999 8999
Q ss_pred EEEEeCCCcEEEEEcccce--------------------EEEeeccccc--CeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 875 IAIGMDDSSIQIYNVRVDE--------------------VKSKLKGHSK--RITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 875 la~g~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 345 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 345 YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9999999999999999988 8899999977 99999999999999999999999999986
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=342.76 Aligned_cols=288 Identities=15% Similarity=0.216 Sum_probs=248.9
Q ss_pred eccCCCCceEEEEcCC----CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 354 TLNQGSSPMSMDFHPV----QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spd----g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
..+|.+.|++++|+|+ ++ +|+||+.|++|+|||+.+++..... .+.+|...|.+++|+
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~-----------------~l~gh~~~v~~~~~~ 89 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQW-----------------SLEGHQLGVVSVDIS 89 (321)
T ss_dssp TTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEEEEEEC
T ss_pred cccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeee-----------------eeccCCCCEEEEEEC
Confidence 3359999999999985 45 5999999999999999876543211 368999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 509 (1114)
|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++||+++++....+..|.
T Consensus 90 ~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~ 164 (321)
T 3ow8_A 90 HTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRG 164 (321)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCC
Confidence 999999999999999999999998766 6778889999999999999 79999999999999999999999999999
Q ss_pred cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
..|.+++|++ ++++|++++.|+.|++||+++.+....+..|...|.+++|+|+++ +|
T Consensus 165 ~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~---------------------~l 221 (321)
T 3ow8_A 165 KFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ---------------------LL 221 (321)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC---------------------EE
T ss_pred ceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC---------------------EE
Confidence 9999999865 568999999999999999998877777777776666666666554 79
Q ss_pred EEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCC
Q 001248 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 669 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 669 (1114)
++++.|+.|++||+.+++.+..+..| ...|.+++|+|++.+|++++.|++|++||+.++ ..+..+.
T Consensus 222 ~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~----------- 287 (321)
T 3ow8_A 222 VTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFF----------- 287 (321)
T ss_dssp EEECTTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEEC-----------
T ss_pred EEEcCCCeEEEEECCCcceeEEEcCC--CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEc-----------
Confidence 99999999999999999999888766 447999999999999999999999999999877 3333321
Q ss_pred CCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccc
Q 001248 670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749 (1114)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 749 (1114)
+
T Consensus 288 -------------------------------------------------------------------------------~ 288 (321)
T 3ow8_A 288 -------------------------------------------------------------------------------D 288 (321)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 2
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEee
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKW 780 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~ 780 (1114)
|...|.+++|+|+++.|++++.||.|++||.
T Consensus 289 h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 289 HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 6678999999999999999999999999985
No 20
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.2e-38 Score=358.56 Aligned_cols=293 Identities=17% Similarity=0.257 Sum_probs=231.3
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+|+ ++++|+.|+.|++|
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw 135 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIF 135 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEE
Confidence 488999999999999999999999999999999999987665 6889999999999999999 79999999999999
Q ss_pred eCCCCc-------ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCe
Q 001248 495 DATNGA-------KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 567 (1114)
Q Consensus 495 d~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 567 (1114)
|+.+.. ....+.+|.+.|.++.|.+..+ ..|++|+.|++|++||+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~------------------------- 189 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTT------------------------- 189 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTT-------------------------
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCC-------------------------
Confidence 987532 3345677777777777655432 3466666666666665543
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEecc---CCCCCCcCeEEEcC-CCCEEEEEeCCCcEE
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA---DGGLPASPRIRFNK-DGCLLAVSTNDNGIK 643 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~ 643 (1114)
++.+..+.. .++...|.+++|++ ++.++++|+.|++|+
T Consensus 190 --------------------------------------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~ 231 (380)
T 3iz6_a 190 --------------------------------------GQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR 231 (380)
T ss_dssp --------------------------------------CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred --------------------------------------CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence 333333311 23345788999987 889999999999999
Q ss_pred EEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCC
Q 001248 644 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN 723 (1114)
Q Consensus 644 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 723 (1114)
+||+.........+
T Consensus 232 ~wd~~~~~~~~~~~------------------------------------------------------------------ 245 (380)
T 3iz6_a 232 LWDLRITSRAVRTY------------------------------------------------------------------ 245 (380)
T ss_dssp EEETTTTCCCCEEE------------------------------------------------------------------
T ss_pred EEECCCCCcceEEE------------------------------------------------------------------
Confidence 99986431111111
Q ss_pred CceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCC
Q 001248 724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 803 (1114)
Q Consensus 724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~ 803 (1114)
T Consensus 246 -------------------------------------------------------------------------------- 245 (380)
T 3iz6_a 246 -------------------------------------------------------------------------------- 245 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCC-------CCCeEEEEEecCCCcEE
Q 001248 804 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNII 875 (1114)
Q Consensus 804 ~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~l 875 (1114)
. +|...|.+++|+|++++|++++ ||+|++||+.+++.+..+..+ ...|++++|+| ++++|
T Consensus 246 ---------~--~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l 313 (380)
T 3iz6_a 246 ---------H--GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI-SGRLL 313 (380)
T ss_dssp ---------C--CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS-SSSEE
T ss_pred ---------C--CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC-CCCEE
Confidence 0 1566677777777777777777 777888887777666555433 23489999999 99999
Q ss_pred EEEeCCCcEEEEEcccceEEEee----cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001248 876 AIGMDDSSIQIYNVRVDEVKSKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934 (1114)
Q Consensus 876 a~g~~dg~v~iwd~~~~~~~~~l----~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~ 934 (1114)
++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|||++|+||+.|++|+||++...
T Consensus 314 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 314 FAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 99999999999999998887776 689999999999999999999999999999999874
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.1e-37 Score=340.13 Aligned_cols=302 Identities=20% Similarity=0.273 Sum_probs=246.4
Q ss_pred Eec-cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 353 RTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 353 ~~~-~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
.++ +|.+.|++++|+|++..+|++|+.|++|++||+.+........ ...+.+|...|.+++|+||
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~--------------~~~~~~h~~~v~~~~~s~d 76 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--------------VRSFKGHSHIVQDCTLTAD 76 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEE--------------EEEEECCSSCEEEEEECTT
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccccc--------------ceEEeCCcccEEEEEECCC
Confidence 344 4999999999999874479999999999999987543221111 1147899999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccC
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1114)
|++|++|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||++ ++++.++.+|...
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~ 150 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHNDW 150 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCCc
Confidence 9999999999999999999998765 6889999999999999999 79999999999999985 6678889999999
Q ss_pred EEEEeeccCC----CceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 512 VYSVCPHHKE----NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 512 v~~~~~~~~~----~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
|.++++.+.. ++.++++++.|+.|++||+++......+..|...|.+++|+|+|+
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~--------------------- 209 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT--------------------- 209 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS---------------------
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC---------------------
Confidence 9999987643 445899999999999999988776666777777666666666655
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT 667 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 667 (1114)
+|++++.||.|++||+.+++.+..+..+ ..+.+++|+|++.++++++.+ .+++|++... .....+..+...
T Consensus 210 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~---- 280 (319)
T 3frx_A 210 LIASAGKDGEIMLWNLAAKKAMYTLSAQ---DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAG---- 280 (319)
T ss_dssp EEEEEETTCEEEEEETTTTEEEEEEECC---SCEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTT----
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCC---CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccc----
Confidence 7999999999999999999999888754 368999999999999988764 5999998765 222222111000
Q ss_pred CCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCc
Q 001248 668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747 (1114)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 747 (1114)
..
T Consensus 281 ------------------------------------------------------------------------------~~ 282 (319)
T 3frx_A 281 ------------------------------------------------------------------------------YS 282 (319)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred cccccceEEEEEccCcceeeecccCceEEEEeecc
Q 001248 748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 782 (1114)
Q Consensus 748 ~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~ 782 (1114)
..+...+.+++|+|+|++|++++.||.|+||++.+
T Consensus 283 ~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 283 KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp GGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 12556789999999999999999999999999753
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3e-37 Score=344.83 Aligned_cols=286 Identities=14% Similarity=0.260 Sum_probs=240.7
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEE
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~ 537 (1114)
..++.+|.+.|.+++|+|+++ +|++|+.|++|++||+.+++.+..+..|...|.+++|++ ++.++++++.|+.|++
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~--~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSR--LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--SGNYVACGGLDNICSI 123 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSS--EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT--TSSEEEEEETTCEEEE
T ss_pred heeecCCCCceEEEEECCCCC--EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC--CCCEEEEEeCCCeEEE
Confidence 347889999999999999999 899999999999999999999999999999999999865 5589999999999999
Q ss_pred EEcCCCCC----eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEec
Q 001248 538 WLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 538 wd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 613 (1114)
|++.+... ...+..|...+.++.|++++. +++++.|+.|++||+.+++.+..+.
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------------l~s~s~d~~i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ----------------------IVTSSGDTTCALWDIETGQQTTTFT 181 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE----------------------EEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc----------------------EEEEECCCcEEEEECCCCcEEEEEc
Confidence 99987542 223445555566655555543 8999999999999999999999888
Q ss_pred cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccc
Q 001248 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 693 (1114)
Q Consensus 614 ~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1114)
.| ...|.+++|+|+++++++|+.||.|++||+.++ .....+.
T Consensus 182 ~h--~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-~~~~~~~----------------------------------- 223 (340)
T 1got_B 182 GH--TGDVMSLSLAPDTRLFVSGACDASAKLWDVREG-MCRQTFT----------------------------------- 223 (340)
T ss_dssp CC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEEC-----------------------------------
T ss_pred CC--CCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-eeEEEEc-----------------------------------
Confidence 66 447999999999999999999999999998765 1111110
Q ss_pred ccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCc
Q 001248 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 773 (1114)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 773 (1114)
T Consensus 224 -------------------------------------------------------------------------------- 223 (340)
T 1got_B 224 -------------------------------------------------------------------------------- 223 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccc
Q 001248 774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 852 (1114)
Q Consensus 774 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~ 852 (1114)
+|...|.+++|+|++++|++++ ||+|++||+.+++.+
T Consensus 224 ------------------------------------------~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~ 261 (340)
T 1got_B 224 ------------------------------------------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261 (340)
T ss_dssp ------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ------------------------------------------CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence 1555677777777777777777 778888887776665
Q ss_pred cccC--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 001248 853 ATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 853 ~~~~--~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd 930 (1114)
..+. .+...|++++|+| ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|||.+|+||+.|++|+|||
T Consensus 262 ~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 262 MTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 5554 2335799999999 999999999999999999999999999999999999999999999999999999999996
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.9e-38 Score=350.85 Aligned_cols=319 Identities=15% Similarity=0.196 Sum_probs=229.3
Q ss_pred ccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccc
Q 001248 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 795 (1114)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1114)
.++.++.+.....|++..... ..|...|.+++|+|||++|++++.|.. ++||-
T Consensus 18 ~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~~-~~wd~--------------- 70 (357)
T 4g56_B 18 LYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLSS-RTWGG--------------- 70 (357)
T ss_dssp ---------------------------------CCCSEEEEEEECSSSCEEEEEECSSS-SSCCE---------------
T ss_pred eEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCCC-ccccC---------------
Confidence 344555567778888753211 248899999999999999999988421 33321
Q ss_pred cccccCCCCCcccccc-CCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccc----cCCCCCCeEEEEEecC
Q 001248 796 APQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQ 870 (1114)
Q Consensus 796 ~~~~w~~~~g~~~~~~-~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~sp~ 870 (1114)
.+.+|+..++...... ....+|...|.+++|+|++++++++.||+|+|||+.+++.... ..+|...|++++|+|
T Consensus 71 ~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp- 149 (357)
T 4g56_B 71 SIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS- 149 (357)
T ss_dssp EEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-
T ss_pred eEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-
Confidence 1223333333321111 1112378889999999999877766699999999988765533 347899999999999
Q ss_pred CCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccccccCCCCC
Q 001248 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT 949 (1114)
Q Consensus 871 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 949 (1114)
++++|++|+.||.|++||+.+++.+..+.+|...|++++|++++. ++++++.|++|++||+.+++...... ...+
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~~- 225 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCAS- 225 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTTC-
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---eccc-
Confidence 999999999999999999999999999999999999999999875 78999999999999998865432211 1111
Q ss_pred CCCCCceEEEEccCC-cEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCC-CEEEEEEcCCeEEEEEcCC
Q 001248 950 PTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 950 ~~~~~i~~v~fspdg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
...+.+++|+|++ .+|++ +.|+.|++||+.+++++..+. +|...|++++|+|++ ++|++|+.||+|+|||+.+
T Consensus 226 --~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 226 --DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp --CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred --cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 1468999999985 57777 578999999999999988876 789999999999987 5799999999999999999
Q ss_pred CeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1027 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
++.+..+ +|.. .|. +++|+|.|+.+|++|+.||+|++|++.+..
T Consensus 302 ~~~~~~~--------~H~~-~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 302 SEVFRDL--------SHRD-FVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CEEEEEC--------CCSS-CEE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CcEeEEC--------CCCC-CEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9887654 2323 255 899999789999999999999999997654
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6e-37 Score=336.36 Aligned_cols=251 Identities=22% Similarity=0.358 Sum_probs=216.3
Q ss_pred Eecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 353 RTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 353 ~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
+++. |.+.|++++|+|+|++ |++|+.||+|+|||+.+++.+. .+.+|...|.+++|+|+
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~-l~s~~~dg~v~lWd~~~~~~~~-------------------~~~~~~~~v~~~~~~~~ 66 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVR-------------------SIQVTETPVRAGKFIAR 66 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGG
T ss_pred EeecCCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCceeE-------------------EeeccCCcEEEEEEeCC
Confidence 4444 9999999999999995 9999999999999999987765 36789999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeecccc
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEA 510 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~ 510 (1114)
+++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|++|++||++++ .....+.+|..
T Consensus 67 ~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~ 141 (304)
T 2ynn_A 67 KNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (304)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred CCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence 9999999999999999999998765 6889999999999999999 7999999999999999987 44567899999
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC-CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
.|.+++|++. ++.+|++|+.|++|++||+........+.. +...+..+.+.+. +++.++
T Consensus 142 ~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l 201 (304)
T 2ynn_A 142 FVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPYM 201 (304)
T ss_dssp CEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS-------------------TTCCEE
T ss_pred cEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc-------------------CCCCEE
Confidence 9999999763 347999999999999999987655544332 2234444444331 245689
Q ss_pred EEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++++.|+.|++||+.+++++..+.+|. ..|.+++|+|++.+|++++.||+|++||..++
T Consensus 202 ~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 202 ITASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEEcCCCeEEEEeCCCCccceeeCCCC--CCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999999999999999998764 47999999999999999999999999999877
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=346.93 Aligned_cols=295 Identities=15% Similarity=0.155 Sum_probs=229.4
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCc-cccccCCCCCCCCCccEEEEee
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~-~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
+...|.+++|+|||++|++++ |+++++|+.... +|+..... ..........+...|.+++|++
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 567799999999999777665 778888874311 11111100 0000000112567899999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccc----cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccccc
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1114)
|+. |++++ ||+|+|||+.+++.+.. +.+|...|++++|+| ++++||+|+.||+|++||+.+++++..+.+|.+
T Consensus 93 d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 93 ERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 964 55666 99999999998877654 348999999999999 999999999999999999999999999999999
Q ss_pred CeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC-CcEEEE-EeCCeEEEEEc
Q 001248 904 RITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFET 980 (1114)
Q Consensus 904 ~V~~l~~s~d~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd-g~~l~~-~~d~~i~iwd~ 980 (1114)
.|++++|++++ .+|++++.|++|++||+.+++...... ...+ ...+.+++|+|+ +++|++ +.|+.|++||+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~---~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG---CSAP---GYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----------CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeee---ccee---eccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 99999999988 478999999999999999865432111 1111 135789999995 567777 57899999999
Q ss_pred CCCceeeeeecCCCCcCeeEEEECCCC-CEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 981 TKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
++++++..+. +|...|++++|+||+ ++|++|+.|++|+|||+.+++++. +. +|... |. +++|+|++
T Consensus 245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H~~~-V~--~v~~sp~~ 311 (344)
T 4gqb_B 245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AHRDF-VR--DATWSPLN 311 (344)
T ss_dssp CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CCSSC-EE--EEEECSSS
T ss_pred CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CCCCC-EE--EEEEeCCC
Confidence 9999998876 899999999999998 579999999999999999998663 33 44333 55 89999965
Q ss_pred CCeEEEEeCCCcEEEEeccCCC
Q 001248 1060 PNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1060 ~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
..+|++|+.||+|++|++.++.
T Consensus 312 ~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 312 HSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TTEEEEEETTSCEEEEECCC--
T ss_pred CeEEEEEcCCCeEEEEECCCCC
Confidence 5678899999999999998865
No 26
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6e-37 Score=342.95 Aligned_cols=208 Identities=16% Similarity=0.233 Sum_probs=172.8
Q ss_pred cccCCCC-CeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 415 LVKDPGV-SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 415 ~~~~h~~-~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
.+.+|.+ .|.+++|||||++||+|+.|++|+|||+.++..........+|...|.+++|+|+++ +|++|+.|++|++
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i 87 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI 87 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence 4678987 999999999999999999999999999998865443334578999999999999999 7999999999999
Q ss_pred EeCCCC--cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe---eeecCCCCeeEEEEEecCCCeE
Q 001248 494 WDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 494 wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
||+.++ +++.++.+|...|.+++|++ ++++|++++.|++|++||++..... ..+..|...|.
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~----------- 154 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK----------- 154 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE-----------
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE-----------
Confidence 998876 45778999999999999865 5589999999999999999865432 23334444444
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceE--EEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEE
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd 646 (1114)
.++|+|++++|++++.|+.|++||..++... ..+..| ...|.+++|+|+|++|++++.|++|++|+
T Consensus 155 ----------~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 155 ----------HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp ----------EEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ----------EEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 4555555568999999999999999887644 455544 56899999999999999999999999998
Q ss_pred ccC
Q 001248 647 TSD 649 (1114)
Q Consensus 647 ~~~ 649 (1114)
...
T Consensus 223 ~~~ 225 (345)
T 3fm0_A 223 QYL 225 (345)
T ss_dssp EEC
T ss_pred ccc
Confidence 643
No 27
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-37 Score=349.94 Aligned_cols=322 Identities=14% Similarity=0.175 Sum_probs=230.4
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC-
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS- 440 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~- 440 (1114)
..+.+.+++. ++.++.+.....|++.... ...|...|.+++|||||++||+|+.
T Consensus 9 sg~d~g~~~~--~~~~~g~~~~~~w~~p~~~-----------------------p~~H~~~V~~v~fSpDG~~las~s~d 63 (357)
T 4g56_B 9 SGVDLGTENL--YFQSNGSSKGSAWGRPVTA-----------------------PACMEVQIGAVRYRRDGALLLAASSL 63 (357)
T ss_dssp --------------------------------------------------------CCCSEEEEEEECSSSCEEEEEECS
T ss_pred cCCCCCccce--EEecCCCccccccCCCCCC-----------------------cccccCCEEEEEECCCCCEEEEEcCC
Confidence 4556666665 3444456777888875431 3569999999999999999999997
Q ss_pred -----CCeEEEEEccCCceeee-eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee----Eeecccc
Q 001248 441 -----RHIVQIYSYHGGDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEA 510 (1114)
Q Consensus 441 -----dg~i~iwd~~~~~~~~~-~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~ 510 (1114)
|+.|++|+..++..... .....+|...|.+++|+|+++ +++++.|++|+|||+.+++... ...+|..
T Consensus 64 ~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 140 (357)
T 4g56_B 64 SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEHDD 140 (357)
T ss_dssp SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCCSS
T ss_pred CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCCCC
Confidence 77899999887654321 123457899999999999986 5677889999999999887543 3457999
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEE
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~ 590 (1114)
.|.+++|++ ++++|++++.|+.|++||+++......+..|...|.+++|++++. ..++
T Consensus 141 ~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--------------------~~~~ 198 (357)
T 4g56_B 141 IVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--------------------TIFL 198 (357)
T ss_dssp CEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS--------------------SCEE
T ss_pred CEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--------------------ceee
Confidence 999999865 568999999999999999999888888888888888888877764 2588
Q ss_pred EEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCC-CCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCC
Q 001248 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 669 (1114)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 669 (1114)
+++.|+.|++||+++++.+..+....+...+.+++|+|+ +.+|++|+.|+.|++||+.++ +....+.
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~----------- 266 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSA----------- 266 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEEC-----------
T ss_pred eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEe-----------
Confidence 999999999999999988877766655667899999997 578999999999999998765 1111110
Q ss_pred CCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccc
Q 001248 670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749 (1114)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 749 (1114)
T Consensus 267 -------------------------------------------------------------------------------- 266 (357)
T 4g56_B 267 -------------------------------------------------------------------------------- 266 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
+|...|++++|+|+
T Consensus 267 ------------------------------------------------------------------~~~~~v~~l~~sp~ 280 (357)
T 4g56_B 267 ------------------------------------------------------------------VHSQNITGLAYSYH 280 (357)
T ss_dssp ------------------------------------------------------------------CCSSCEEEEEECSS
T ss_pred ------------------------------------------------------------------ccceeEEEEEEcCC
Confidence 15556777778877
Q ss_pred C-CEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 830 D-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 830 ~-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
+ ++|++++ |++|+|||+.+++.+..+ +|...|++++|+|.++.+||+|+.||+|++|++.+.
T Consensus 281 ~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 281 SSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 6 4678887 899999999888777655 699999999999877899999999999999999764
No 28
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.4e-37 Score=350.12 Aligned_cols=302 Identities=19% Similarity=0.305 Sum_probs=249.5
Q ss_pred eeEec-cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 351 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 351 ~~~~~-~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
..+++ +|.+.|++++|+|+|++ |++|+.||+|+|||+.+++... .+.+|...|.+++|+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h~~~v~~~~~s 117 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTH-------------------AIKLHCPWVMECAFA 117 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEE-------------------EEECCCTTCCCCEEC
T ss_pred EeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccce-------------------EEecCCCCEEEEEEC
Confidence 33444 59999999999999995 9999999999999999988765 367899999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCce----eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
|+|++||+|+.|+.|+|||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+..+
T Consensus 118 ~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~ 196 (380)
T 3iz6_a 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISIF 196 (380)
T ss_dssp TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEEE
T ss_pred CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEEe
Confidence 9999999999999999999975321 1122357899999999999998654 6999999999999999999988877
Q ss_pred -----eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC-CCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeE
Q 001248 506 -----EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579 (1114)
Q Consensus 506 -----~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~ 579 (1114)
.+|...|.+++|++ .++.++++|+.|++|++||++. ......+..|...|.+++|+|++.
T Consensus 197 ~~~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~------------- 262 (380)
T 3iz6_a 197 GSEFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ------------- 262 (380)
T ss_dssp CCCSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-------------
T ss_pred ecccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-------------
Confidence 68999999999864 3557999999999999999984 355556666766666666666554
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC-----CCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 580 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
+|++++.|++|++||+.+++.+..+..+.. ...+.+++|+|+|++|++|+.||.|++||..++. ..
T Consensus 263 --------~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-~~ 333 (380)
T 3iz6_a 263 --------RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE-MV 333 (380)
T ss_dssp --------EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC-EE
T ss_pred --------eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc-eE
Confidence 799999999999999999999888765422 2348899999999999999999999999987662 22
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
..+..
T Consensus 334 ~~~~~--------------------------------------------------------------------------- 338 (380)
T 3iz6_a 334 LNLGT--------------------------------------------------------------------------- 338 (380)
T ss_dssp EEECC---------------------------------------------------------------------------
T ss_pred EEEec---------------------------------------------------------------------------
Confidence 21100
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecc
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 782 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~ 782 (1114)
...+|...|.+++|+|+|..|++++.|+.|++|++..
T Consensus 339 -----------~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 339 -----------LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp -----------SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred -----------ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 0023778899999999999999999999999999753
No 29
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-36 Score=333.64 Aligned_cols=289 Identities=19% Similarity=0.256 Sum_probs=245.5
Q ss_pred EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEE
Q 001248 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538 (1114)
Q Consensus 459 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~w 538 (1114)
.++.+|.+.|.+++|+|+++ ++++++.|++|++||+.++..+..+.+|..+|.+++|++ ++++|++|+.|++|++|
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~--~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEP--WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA--RKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEEECSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG--GGTEEEEEETTSEEEEE
T ss_pred EeecCCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC--CCCEEEEECCCCEEEEE
Confidence 36889999999999999999 799999999999999999999999999999999999865 45799999999999999
Q ss_pred EcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc-eEEEeccCCC
Q 001248 539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGG 617 (1114)
Q Consensus 539 d~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~ 617 (1114)
|+.+++....+..|...|.+++|+|++. ++++++.|++|++||+.++. ....+..|
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~---------------------~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-- 139 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---------------------YVLSGSDDLTVKLWNWENNWALEQTFEGH-- 139 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSS---------------------EEEEEETTSCEEEEEGGGTTEEEEEECCC--
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCC---------------------EEEEECCCCeEEEEECCCCcchhhhhccc--
Confidence 9999888888888877777777776665 79999999999999998874 44566655
Q ss_pred CCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccc
Q 001248 618 LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA 696 (1114)
Q Consensus 618 ~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1114)
...|.+++|+| ++.+|++|+.|++|++||+.++........
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~-------------------------------------- 181 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-------------------------------------- 181 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEEC--------------------------------------
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceecc--------------------------------------
Confidence 45799999999 689999999999999999865411100000
Q ss_pred cccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEE
Q 001248 697 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 776 (1114)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~ 776 (1114)
T Consensus 182 -------------------------------------------------------------------------------- 181 (304)
T 2ynn_A 182 -------------------------------------------------------------------------------- 181 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee--CCCEEEEEe-CCeEEEEEcCCCcccc
Q 001248 777 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMA 853 (1114)
Q Consensus 777 vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~--d~~~l~~~~-dg~i~iwd~~~~~~~~ 853 (1114)
++...+..++++| ++.+|++++ |++|++||+.+++++.
T Consensus 182 ---------------------------------------~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~ 222 (304)
T 2ynn_A 182 ---------------------------------------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222 (304)
T ss_dssp ---------------------------------------CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred ---------------------------------------CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce
Confidence 0233445555554 677899998 8999999999999999
Q ss_pred ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCC--EEEEEeCCCcEEEEeC
Q 001248 854 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN--VLVSSGADSQLCVWSS 931 (1114)
Q Consensus 854 ~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~--~l~s~s~D~~v~iwd~ 931 (1114)
++.+|...|.+++|+| ++.+|++|+.||+|++||+.+++++..+..|...+++++|+|++. ++++|+.|| +.+|++
T Consensus 223 ~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 223 TLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL 300 (304)
T ss_dssp EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred eeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence 9999999999999999 899999999999999999999999999999999999999999875 578877666 888887
Q ss_pred CC
Q 001248 932 DG 933 (1114)
Q Consensus 932 ~~ 933 (1114)
..
T Consensus 301 ~~ 302 (304)
T 2ynn_A 301 GN 302 (304)
T ss_dssp C-
T ss_pred cc
Confidence 65
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-37 Score=353.52 Aligned_cols=359 Identities=11% Similarity=0.162 Sum_probs=270.7
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEc----CCcce------eEEeeeeeeccCCCCcccc-cccccCC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEV----GSRER------LVLRNFKVWDLGACSMPLQ-AALVKDP 419 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~----~~~~~------~~~~~~~~~d~~~~~~~~~-~~~~~~h 419 (1114)
......|.+.|++++|+|+|+.+||+|+.||.|++||+ .+++. ...... ++. .....+|
T Consensus 38 ~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 107 (425)
T 1r5m_A 38 ILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH----------PFALSASSGKT 107 (425)
T ss_dssp ECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC----------CCCCC------
T ss_pred heeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc----------cccccccccCC
Confidence 33445578999999999999933999999999999999 88773 221000 000 0012347
Q ss_pred CCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC
Q 001248 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG 499 (1114)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~ 499 (1114)
.+.|.+++|+|++++|++++.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.++
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~ 181 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISG 181 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTT
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCC
Confidence 88999999999999999999999999999 4555444 6789999999999999999 7999999999999999999
Q ss_pred cceeEeeccccC---------------EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecC
Q 001248 500 AKQYIFEGHEAP---------------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 564 (1114)
Q Consensus 500 ~~~~~~~~h~~~---------------v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~ 564 (1114)
+.+..+..+... +.+++|++. ..+++++.|+.|++||+.+......+..+...+.+++|+|+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp EEEEEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred cEEEEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence 999999888777 888888654 46999999999999999988777777777776776666666
Q ss_pred CCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEE
Q 001248 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644 (1114)
Q Consensus 565 g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~i 644 (1114)
++ ++++++.|+.|++||+.+++.+..+..+ ...+.+++|+|++ ++++++.||.|++
T Consensus 259 ~~---------------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i 314 (425)
T 1r5m_A 259 NK---------------------LLLSASDDGTLRIWHGGNGNSQNCFYGH--SQSIVSASWVGDD-KVISCSMDGSVRL 314 (425)
T ss_dssp TT---------------------EEEEEETTSCEEEECSSSBSCSEEECCC--SSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred CC---------------------EEEEEcCCCEEEEEECCCCccceEecCC--CccEEEEEECCCC-EEEEEeCCCcEEE
Confidence 54 7999999999999999999988888765 4479999999999 9999999999999
Q ss_pred EEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCC
Q 001248 645 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 724 (1114)
Q Consensus 645 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 724 (1114)
||+.++ .....+.
T Consensus 315 ~d~~~~-~~~~~~~------------------------------------------------------------------ 327 (425)
T 1r5m_A 315 WSLKQN-TLLALSI------------------------------------------------------------------ 327 (425)
T ss_dssp EETTTT-EEEEEEE------------------------------------------------------------------
T ss_pred EECCCC-cEeEecc------------------------------------------------------------------
Confidence 998776 2222211
Q ss_pred ceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCC
Q 001248 725 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 804 (1114)
Q Consensus 725 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~ 804 (1114)
.|...|.+++|+|+++.+++++.||.|++|++.....
T Consensus 328 ------------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~------------------- 364 (425)
T 1r5m_A 328 ------------------------VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS------------------- 364 (425)
T ss_dssp ------------------------CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-------------------
T ss_pred ------------------------cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcc-------------------
Confidence 1456788888888888888888888888888753211
Q ss_pred CccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCC--CeEEEEEecCCCcEEEEEeCCC
Q 001248 805 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDS 882 (1114)
Q Consensus 805 g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~la~g~~dg 882 (1114)
.. .. +....++. +.......+..+..|.. .|++++|+| ++++|++++.||
T Consensus 365 ---~~------------~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg 416 (425)
T 1r5m_A 365 ---KS------------RS---------LYGNRDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQ 416 (425)
T ss_dssp -----------------------------------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSS
T ss_pred ---ce------------ee---------eecccccc---cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCc
Confidence 00 00 00001222 22223346677788866 999999999 899999999999
Q ss_pred cEEEEEcc
Q 001248 883 SIQIYNVR 890 (1114)
Q Consensus 883 ~v~iwd~~ 890 (1114)
.|++||+.
T Consensus 417 ~i~iw~~~ 424 (425)
T 1r5m_A 417 EGSVVAIP 424 (425)
T ss_dssp CCEEEECC
T ss_pred eEEEEeec
Confidence 99999975
No 31
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-38 Score=366.23 Aligned_cols=332 Identities=13% Similarity=0.187 Sum_probs=268.8
Q ss_pred CCeeEEEEcCCCC-eEEEE----------eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC
Q 001248 421 VSVNRVIWSPDGS-LFGVA----------YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1114)
Q Consensus 421 ~~V~~l~~spdg~-~las~----------~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 489 (1114)
..|.+++|||+|+ +|++| +.|+.|+|||+.+++.......+ .|...|.+++|+|+++ +|++++.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK--IIAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS--CEEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC--eEEEEccCC
Confidence 3789999999998 89999 88999999999987633222233 6889999999999999 799999999
Q ss_pred CEEEEeCCC----CcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCC------Ceeee---cCCCCee
Q 001248 490 TIKVWDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG------SRVDY---EAPGRWC 556 (1114)
Q Consensus 490 ~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------~~~~~---~~~~~~v 556 (1114)
.|++||+.+ .+.+..+.+|...|.+++|+++. +.+|++++.|+.|++||+.+.. ..... ..+...+
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCC-CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 999999987 45788899999999999997652 4799999999999999998866 22222 3344455
Q ss_pred EEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC----CCCcCeEEEcCCC-C
Q 001248 557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNKDG-C 631 (1114)
Q Consensus 557 ~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~d~-~ 631 (1114)
.+++|+|++ +.++++++.|+.|++||+.+++.+..+..+.. ...+.+++|+|++ .
T Consensus 169 ~~~~~~~~~--------------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 169 ISLAWNQSL--------------------AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp CEEEECSSC--------------------TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred eEEEeCCCC--------------------CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 555555542 35799999999999999999999988876531 4579999999997 6
Q ss_pred EEEEEeCCC---cEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCc
Q 001248 632 LLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1114)
Q Consensus 632 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1114)
++++++.|+ .|++||+.++......+
T Consensus 229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~~--------------------------------------------------- 257 (416)
T 2pm9_A 229 RVATATGSDNDPSILIWDLRNANTPLQTL--------------------------------------------------- 257 (416)
T ss_dssp EEEEEECCSSSCCCCEEETTSTTSCSBCC---------------------------------------------------
T ss_pred EEEEEECCCCCceEEEEeCCCCCCCcEEe---------------------------------------------------
Confidence 899999998 99999987652111100
Q ss_pred cccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCC
Q 001248 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788 (1114)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 788 (1114)
T Consensus 258 -------------------------------------------------------------------------------- 257 (416)
T 2pm9_A 258 -------------------------------------------------------------------------------- 257 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccCCCCCccccccCCCCCCCCCccEEEEee-CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEE
Q 001248 789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA 866 (1114)
Q Consensus 789 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 866 (1114)
. .+|...|.+++|+| ++++|++++ ||.|++||+.+++.+..+..|...|.+++
T Consensus 258 ------------------------~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~ 312 (416)
T 2pm9_A 258 ------------------------N-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK 312 (416)
T ss_dssp ------------------------C-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE
T ss_pred ------------------------e-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE
Confidence 0 01566778888888 888888888 89999999999999999999999999999
Q ss_pred EecCCC-cEEEEEeCCCcEEEEEcccceEEEeec-----------------------------------ccccCeeEEEE
Q 001248 867 FHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLK-----------------------------------GHSKRITGLAF 910 (1114)
Q Consensus 867 ~sp~d~-~~la~g~~dg~v~iwd~~~~~~~~~l~-----------------------------------~h~~~V~~l~~ 910 (1114)
|+| ++ .+|++++.||.|++||+.+++...... .|...+++++|
T Consensus 313 ~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (416)
T 2pm9_A 313 FAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW 391 (416)
T ss_dssp ECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred ECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence 999 66 899999999999999998765332221 16778889999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCC
Q 001248 911 SHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 911 s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+|||++|++++.|++|+||++.+
T Consensus 392 s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 392 AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ETTTEEECBCTTSSCBCCBCCCC
T ss_pred eeCCeEEEEeCCCCeEEEEEecc
Confidence 99999999999999999999986
No 32
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.2e-36 Score=331.28 Aligned_cols=214 Identities=19% Similarity=0.288 Sum_probs=183.5
Q ss_pred cccCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEccCCce--eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 415 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg-~~las~~~dg~i~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+... ......+.+|...|.+++|+|+++ ++++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 578999999999999965 8999999999999999975322 223447889999999999999999 79999999999
Q ss_pred EEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee
Q 001248 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
++||+.+++.+..+.+|...|.+++|++ ++.++++++.|++|++||++. .....+..|...+.++.+.|.+.
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~----- 161 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK----- 161 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-------
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC-----
Confidence 9999999999999999999999999865 457999999999999999964 45566777888888888877653
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
..+++..+++++.|+.|++||+.+++....+..| ...|.+++|+|+|++|++++.||.|++||+.++
T Consensus 162 ----------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 162 ----------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH--NSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp --------------CCEEEEEETTSCEEEEETTTTEEEEEECCC--CSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ----------CCCCccEEEEEeCCCEEEEEECCcchhheeecCC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 2234557999999999999999999988888766 457999999999999999999999999998765
No 33
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.4e-36 Score=336.87 Aligned_cols=289 Identities=14% Similarity=0.189 Sum_probs=246.9
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|.+.|.+++|+||+++||+|+.||+|+|||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 478999999999999999999999999999999999887655 5778999999999999999 79999999999999
Q ss_pred eCCCC------cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeE
Q 001248 495 DATNG------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 495 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
++... .....+.+|...|.+++|+++ +..|++++.|++|++||+++.+....+..|...|.++.++++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~--- 208 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE--- 208 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS---
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC---
Confidence 98643 345678889999999998654 4789999999999999999988877887777777777665532
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
++++|++++.||.|++||+++++++..+..|. ..|.+++|+|++.+|++++.|++|++||+.
T Consensus 209 ----------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 209 ----------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE--SDVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp ----------------SCCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ----------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 24579999999999999999999999887664 479999999999999999999999999986
Q ss_pred CCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeE
Q 001248 649 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 728 (1114)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 728 (1114)
++. ....+.
T Consensus 271 ~~~-~~~~~~---------------------------------------------------------------------- 279 (354)
T 2pbi_B 271 ADR-EVAIYS---------------------------------------------------------------------- 279 (354)
T ss_dssp TTE-EEEEEC----------------------------------------------------------------------
T ss_pred CCc-EEEEEc----------------------------------------------------------------------
Confidence 541 110000
Q ss_pred EEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccc
Q 001248 729 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 808 (1114)
Q Consensus 729 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~ 808 (1114)
.
T Consensus 280 --------------------------------~----------------------------------------------- 280 (354)
T 2pbi_B 280 --------------------------------K----------------------------------------------- 280 (354)
T ss_dssp --------------------------------C-----------------------------------------------
T ss_pred --------------------------------C-----------------------------------------------
Confidence 0
Q ss_pred cccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 809 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 809 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
..+...+.+++|+|++++|++++ |++|++||+.+++.+..+.+|...|++++|+| ++++||+|+.||+|++|
T Consensus 281 ------~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 281 ------ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp ------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEE
T ss_pred ------CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEec
Confidence 00223467788999999999998 89999999999998889999999999999999 99999999999999999
Q ss_pred E
Q 001248 888 N 888 (1114)
Q Consensus 888 d 888 (1114)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 6
No 34
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.8e-37 Score=339.06 Aligned_cols=258 Identities=15% Similarity=0.177 Sum_probs=201.4
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCc-ccccccccCCCCCeeEEEEcCCCCe
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM-PLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
.|...|.+++|||||+ +|++++ |+++++||... .+|+...... .........|...|.+++|+||+ .
T Consensus 28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred cccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 3667799999999999 477776 88899997321 1121100000 00011123456789999999985 6
Q ss_pred EEEEeCCCeEEEEEccCCceeeee-EeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEE
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQH-LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~-~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1114)
|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++.++.+|...|.
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 789999999999999998765432 34568999999999999999 799999999999999999999999999999999
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC--CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
+++|++... .++++++.|++|++||+++.+....+.. +...+.+++|+|++ ++++++
T Consensus 174 ~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~--------------------~~~l~s 232 (344)
T 4gqb_B 174 CVAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ--------------------SEVFVF 232 (344)
T ss_dssp EEEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSC--------------------TTEEEE
T ss_pred EEEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCC--------------------CcceEE
Confidence 999976543 5889999999999999998777665432 33345555555433 246888
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCC-CEEEEEeCCCcEEEEEccCC
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iwd~~~~ 650 (1114)
|+.||.|++||+++++++..+..|. ..|.+++|+|++ ++|++++.|++|++||+.++
T Consensus 233 g~~dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 233 GDENGTVSLVDTKSTSCVLSSAVHS--QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp EETTSEEEEEESCC--CCEEEECCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred eccCCcEEEEECCCCcEEEEEcCCC--CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 9999999999999999999998764 479999999998 57999999999999998766
No 35
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.6e-36 Score=333.23 Aligned_cols=216 Identities=20% Similarity=0.308 Sum_probs=180.5
Q ss_pred cccCCCCCeeEEEE-----cC-CCCeEEEEeCCCeEEEEEccCCce----eeeeEeeccccCCeeEEEecCCCCeeEEEE
Q 001248 415 LVKDPGVSVNRVIW-----SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVIT 484 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~-----sp-dg~~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s 484 (1114)
.+.+|.+.|++++| ++ |+++|++|+.|++|+|||+.+++. ......+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 57899999999999 77 999999999999999999976432 123346889999999999999999 7999
Q ss_pred ecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec---CCCCeeEEEEE
Q 001248 485 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAY 561 (1114)
Q Consensus 485 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~ 561 (1114)
|+.|++|++||+++++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+.. ....... .+...+.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 99999999999999999999999999999999865 457999999999999999973 2222222 56667888888
Q ss_pred ecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCc
Q 001248 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 641 (1114)
Q Consensus 562 s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~ 641 (1114)
+|++... ..+.|.+.++++++.|+.|++||. ..+....+..| ...|.+++|+|+|++|++++.||.
T Consensus 171 ~~~~~~~-----------~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h--~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 171 SPIMKSA-----------NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH--ESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp CCCCCSC-----------SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC--SSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccccccc-----------cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc--cccceEEEECCCCCEEEEEcCCCe
Confidence 8876411 123455678999999999999994 55666677655 457999999999999999999999
Q ss_pred EEEEEccC
Q 001248 642 IKILATSD 649 (1114)
Q Consensus 642 i~iwd~~~ 649 (1114)
|++||+.+
T Consensus 237 v~iwd~~~ 244 (343)
T 2xzm_R 237 LLIWDILN 244 (343)
T ss_dssp EEEEESSC
T ss_pred EEEEECCC
Confidence 99999743
No 36
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.3e-36 Score=349.88 Aligned_cols=355 Identities=14% Similarity=0.142 Sum_probs=287.0
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
+.+++++|+|+|++ |++|+.||.|++||+.+++... .+..| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence 44568999999996 9999999999999998765432 24445 455566789999999999
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeec
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 518 (1114)
+.||.|++||+.+++... .+.+|...|.+++|+|+++ +|++|+.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999887654 5679999999999999999 79999999999999999999999999999999999987
Q ss_pred cCCCceEEEEEecCCeEEEEEcCCCCCeeeecC---CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 519 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
+ ++.+|++++.|+.|++||+++.+....+.. +...+.++++.+++...........+..++|+|+++++++++.|
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 268 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS 268 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence 6 457999999999999999998887777764 56789999999887766666666788889999999999999999
Q ss_pred CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCC-EEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCC
Q 001248 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1114)
|.|++||+.+++.+..+.. .+...+.+++|+|++. +|++++.||.|++||+.++...+..+..+
T Consensus 269 g~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-------------- 333 (420)
T 3vl1_A 269 GVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-------------- 333 (420)
T ss_dssp SCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES--------------
T ss_pred CeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc--------------
Confidence 9999999999988877753 2345799999999998 99999999999999998774333333211
Q ss_pred ccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccce
Q 001248 675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1114)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1114)
+...|
T Consensus 334 ---------------------------------------------------------------------------~~~~v 338 (420)
T 3vl1_A 334 ---------------------------------------------------------------------------EGTPI 338 (420)
T ss_dssp ---------------------------------------------------------------------------TTSCE
T ss_pred ---------------------------------------------------------------------------CCCCc
Confidence 34566
Q ss_pred EEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC---
Q 001248 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS--- 831 (1114)
Q Consensus 755 ~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~--- 831 (1114)
..+.+ ++++.+++++.|+.|++|++........ +........ + ..+...|.+++|+|+++
T Consensus 339 ~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~----------~~~~~~~~~----~--~~~~~~v~~~~~s~~~~~~g 401 (420)
T 3vl1_A 339 NNVYF-AAGALFVSSGFDTSIKLDIISDPESERP----------AIEFETPTF----L--VSNDDAVSQFCYVSDDESNG 401 (420)
T ss_dssp EEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSC----------EECTTSCEE----E--CCSSCCCCEEEEECCSSSSC
T ss_pred eEEEe-CCCCEEEEecCCccEEEEeccCCCCCcc----------ceeccCccE----E--ccCCcceEEEEEccCCCCcc
Confidence 67744 5788899999999999999875321100 000011111 1 13788999999999999
Q ss_pred -EEEEEeCCeEEEEEcCC
Q 001248 832 -YVMSASGGKISLFNMMT 848 (1114)
Q Consensus 832 -~l~~~~dg~i~iwd~~~ 848 (1114)
.+++|++|.+.+|++++
T Consensus 402 ~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 402 EVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEEETTTEEEEEESCC
T ss_pred eEEEEcCCceEEEEeccC
Confidence 56666699999999864
No 37
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-37 Score=358.74 Aligned_cols=367 Identities=14% Similarity=0.183 Sum_probs=268.8
Q ss_pred cCCCCceEEEEcCCCCeEEEEE----------ecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeE
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVG----------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR 425 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg----------~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~ 425 (1114)
.+...|++++|+|+|+.+|++| +.||.|+|||+.+++.... .....|...|.+
T Consensus 10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~ 72 (416)
T 2pm9_A 10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFND 72 (416)
T ss_dssp CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEE
T ss_pred hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEE
Confidence 3456789999999998679999 8899999999998753210 013468889999
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCce-eeeeEeeccccCCeeEEEecCC-CCeeEEEEecCCCCEEEEeCCCCc---
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGA--- 500 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--- 500 (1114)
++|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +. +|++++.|+.|++||+.+++
T Consensus 73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccc
Confidence 99999999999999999999999987211 1123368899999999999999 66 79999999999999999887
Q ss_pred ---cee---EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC------CCeeEEEEEecCCCeE
Q 001248 501 ---KQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGTRT 568 (1114)
Q Consensus 501 ---~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~g~~~ 568 (1114)
... .+.+|...|.+++|++.. +.++++++.|+.|++||+++.+....+..+ ...+.+++|+|++.
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 227 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS-- 227 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT--
T ss_pred ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC--
Confidence 333 346799999999987652 479999999999999999987766666554 34455555555432
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCC---eEEEEECCCc-ceEEEec-cCCCCCCcCeEEEcC-CCCEEEEEeCCCcE
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSV-QLLTSID-ADGGLPASPRIRFNK-DGCLLAVSTNDNGI 642 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i 642 (1114)
.++++++.|+ .|++||++++ ..+..+. .| ...|.+++|+| ++++|++++.||.|
T Consensus 228 ------------------~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v 287 (416)
T 2pm9_A 228 ------------------TRVATATGSDNDPSILIWDLRNANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTV 287 (416)
T ss_dssp ------------------TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred ------------------CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCE
Confidence 4788999998 9999999986 5555555 44 45799999999 99999999999999
Q ss_pred EEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccC
Q 001248 643 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES 722 (1114)
Q Consensus 643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 722 (1114)
++||+.++ +.+..+.
T Consensus 288 ~~wd~~~~-~~~~~~~---------------------------------------------------------------- 302 (416)
T 2pm9_A 288 LLWNPESA-EQLSQFP---------------------------------------------------------------- 302 (416)
T ss_dssp EEECSSSC-CEEEEEE----------------------------------------------------------------
T ss_pred EEeeCCCC-ccceeec----------------------------------------------------------------
Confidence 99998876 3333221
Q ss_pred CCceeEEEeccCCCCccccccccCccccccceEEEEEccCc-ceeeecccCceEEEEeecccccCCCCCccccccccccC
Q 001248 723 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1114)
Q Consensus 723 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~ 801 (1114)
.|...|.+++|+|++ ..+++++.|+.|++|++.....
T Consensus 303 --------------------------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~---------------- 340 (416)
T 2pm9_A 303 --------------------------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN---------------- 340 (416)
T ss_dssp --------------------------CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC----------------
T ss_pred --------------------------CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC----------------
Confidence 155678889999999 8999999999999999753111
Q ss_pred CCCCccccccCCCCCCCC-----CccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEE
Q 001248 802 PPSGIMMTNDVTDSNPEE-----AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 876 (1114)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~-----~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la 876 (1114)
... ... ......+.+.+..++.+.. +. .... .....+...+.+++|+| +|++||
T Consensus 341 ----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~-~~~~~~~~~~~~~~~s~-dg~~la 399 (416)
T 2pm9_A 341 ----------TLD--EQETETKQQESETDFWNNVSREESKEK--PS-----VFHL-QAPTWYGEPSPAAHWAF-GGKLVQ 399 (416)
T ss_dssp ----------SSC--C----------------------CCSC--CC-----SSCC-CCCSTTCCCSCCCEEET-TTEEEC
T ss_pred ----------Ccc--cccccccccCCcccccccccccccccc--cc-----cccc-cCCccccCCccceEEee-CCeEEE
Confidence 000 100 0011112222222222110 00 0011 22233667788999999 999999
Q ss_pred EEeCCCcEEEEEcccc
Q 001248 877 IGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 877 ~g~~dg~v~iwd~~~~ 892 (1114)
+|+.||.|+||++.+.
T Consensus 400 ~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 400 ITPDGKGVSITNPKIS 415 (416)
T ss_dssp BCTTSSCBCCBCCCCC
T ss_pred EeCCCCeEEEEEeccC
Confidence 9999999999998764
No 38
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-36 Score=336.48 Aligned_cols=299 Identities=16% Similarity=0.214 Sum_probs=237.9
Q ss_pred cccc-ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEe
Q 001248 749 LRAT-KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS 827 (1114)
Q Consensus 749 ~~~~-~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s 827 (1114)
+|.. .|..++|+|+|++|++++.|+.|+||++..... ........+|...|.+++|+
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~~~~h~~~v~~~~~s 70 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVLSEGHQRTVRKVAWS 70 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEECSSCSSCEEEEEEC
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeeeccccCCcEEEEEEC
Confidence 3666 899999999999999999999999999763211 00000112489999999999
Q ss_pred eCCCEEEEEe-CCeEEEEEcCCC--ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---eEEEeeccc
Q 001248 828 KNDSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGH 901 (1114)
Q Consensus 828 ~d~~~l~~~~-dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~---~~~~~l~~h 901 (1114)
|++++|++++ |++|++|++.++ +.+..+.+|...|.+++|+| ++++||+|+.|++|++||+.++ +++..+.+|
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 9999999999 999999998766 45678899999999999999 8999999999999999999875 456778899
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEc
Q 001248 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET 980 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~ 980 (1114)
...|++++|+|++++|++++.|++|++|++..++. .+.....+|. ..|.+++|+|+|++|++ +.|+.|++||.
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 99999999999999999999999999999887432 2233445555 48999999999999999 68999999996
Q ss_pred CCC---------------ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeee----EEeCCCcccCC
Q 001248 981 TKL---------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR----CRINPSAYLPA 1041 (1114)
Q Consensus 981 ~~~---------------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~----~~~~~~~~~~~ 1041 (1114)
... +++..+. ..|...|.+++|+|++.+|++++.|+.|++|+...+... ..+. .....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~--~~~~~ 300 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT--AHLHQ 300 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE--EEETT
T ss_pred ccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE--eeecc
Confidence 432 1222222 248899999999999999999999999999998765321 1110 01122
Q ss_pred CCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCC
Q 001248 1042 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1082 (1114)
Q Consensus 1042 ~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~ 1082 (1114)
+|... |. +++|+|+++.+|++|+.||+|++|++.+++.
T Consensus 301 ~h~~~-V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 301 AHSQD-VN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp SSSSC-EE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred cccCc-Ee--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 44333 55 8999996557999999999999999999884
No 39
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1.1e-34 Score=373.59 Aligned_cols=526 Identities=11% Similarity=0.062 Sum_probs=370.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
+...+.+++||| ++ |+..+. +.|++|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~--~~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DR-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEET--TE-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeC--CE-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 456789999996 44 555543 799999999876543 678999999999999999999
Q ss_pred EEeCC------CeEEEEEccCCceeeeeEeeccccCCe-------eEEEecCCCCeeEEEEecCC------CCEEEEeCC
Q 001248 437 VAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGV-------NDIAFSHPNKQLCVITCGDD------KTIKVWDAT 497 (1114)
Q Consensus 437 s~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~V-------~~v~~s~d~~~~~l~s~~~d------~~i~iwd~~ 497 (1114)
+++.+ ..|++||+.+++. . .+..|...+ ..++|+|||+ ++++++.+ ..|++||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88643 4799999988763 2 577888888 9999999998 67777654 358888887
Q ss_pred CCcceeEeeccccCEEEEeeccCCCceEEEEEec------------CCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCC
Q 001248 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL------------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565 (1114)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~------------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g 565 (1114)
+++.. .+..+. ...++|++ | ++++++. +....+|..........+..+...+.++.|++
T Consensus 143 ~g~~~-~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~-- 213 (1045)
T 1k32_A 143 GINFV-PLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG-- 213 (1045)
T ss_dssp GTEEE-ECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--
T ss_pred CCCeE-EecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--
Confidence 77643 333332 23455654 5 7888753 23455664333233333344444455555544
Q ss_pred CeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC-cceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEE
Q 001248 566 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644 (1114)
Q Consensus 566 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~i 644 (1114)
+ ..+++++.++.+.+|.+.. +.....+..+. .+...+|+|||+.|+++. ++.|.+
T Consensus 214 -------------------d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~ 269 (1045)
T 1k32_A 214 -------------------H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYI 269 (1045)
T ss_dssp -------------------T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEE
T ss_pred -------------------C-EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEE
Confidence 4 3466677889889997653 44445554443 367889999999988874 789999
Q ss_pred EEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCC
Q 001248 645 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND 724 (1114)
Q Consensus 645 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 724 (1114)
|+.... . +..+.++... .
T Consensus 270 ~d~~~~-~-l~~l~~~~~~------------------------------------------------------------~ 287 (1045)
T 1k32_A 270 FNPDTE-K-IEKIEIGDLE------------------------------------------------------------S 287 (1045)
T ss_dssp ECTTTC-C-EEECCCCCCC------------------------------------------------------------B
T ss_pred ecCCce-E-eeeeccCccc------------------------------------------------------------c
Confidence 987322 1 1122111000 0
Q ss_pred ceeEEEeccCCCCccccccccCccccccceEEEEEc-cCcceeeecccCceEEEEeecccccCCCCCccccccccccCCC
Q 001248 725 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 803 (1114)
Q Consensus 725 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~ 803 (1114)
... | ..+...+..++|+ |+|+.++.++ ++.+++|++.
T Consensus 288 ~~~-~------------------~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~---------------------- 325 (1045)
T 1k32_A 288 PED-R------------------IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS---------------------- 325 (1045)
T ss_dssp CCS-E------------------EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT----------------------
T ss_pred ccc-c------------------cccccccceeeecCCCCCEEEEEE-cCEEEEEcCC----------------------
Confidence 000 0 0145567899999 9999888877 7788887654
Q ss_pred CCccccccCCCCCCCC-CccEEEEeeCCCEEEEEe-CCeEE-EEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC
Q 001248 804 SGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS-GGKIS-LFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD 880 (1114)
Q Consensus 804 ~g~~~~~~~~~~~~~~-~v~~v~~s~d~~~l~~~~-dg~i~-iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~ 880 (1114)
++.... +. .+.. .+..++|+ ||+.|++++ ++.+. +|++.+++.. .+.+|...+..++|+| ||++||+++.
T Consensus 326 ~~~~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~ 398 (1045)
T 1k32_A 326 GTYVLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVAND 398 (1045)
T ss_dssp SSBEEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEET
T ss_pred CCceEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECC
Confidence 222221 11 1555 78899999 999999988 57788 8999876654 3447778899999999 9999999999
Q ss_pred CCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC----------cEEEEeCCCCccccccccccCCCCCC
Q 001248 881 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS----------QLCVWSSDGWEKQKNRFLQIPTGRTP 950 (1114)
Q Consensus 881 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~----------~v~iwd~~~~~~~~~~~~~~~~~~~~ 950 (1114)
++.|++||+.+++....+.+|...|.+++|||||++|++++.++ .|++||+.+++. .....+.
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~------~~l~~~~- 471 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI------FAATTEN- 471 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE------EECSCSS-
T ss_pred CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE------EEeeCCC-
Confidence 99999999999998888878999999999999999999887754 899999988542 1122222
Q ss_pred CCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCce-----------------------------------------eee
Q 001248 951 TAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC-----------------------------------------VKQ 988 (1114)
Q Consensus 951 ~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~-----------------------------------------~~~ 988 (1114)
..+..++|+|||++|+. +.++...+|+...... .+.
T Consensus 472 --~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~ 549 (1045)
T 1k32_A 472 --SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS 549 (1045)
T ss_dssp --SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGC
T ss_pred --cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHce
Confidence 35678999999999988 4555555565432211 011
Q ss_pred eecCCCCcCeeEEEECCCCCEEEE-------------EEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEe
Q 001248 989 WVPRESSAPITHATFSCDSQLVYA-------------CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1055 (1114)
Q Consensus 989 ~~~~~h~~~v~~l~~s~dg~~l~s-------------~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1055 (1114)
.....|...+..++++|||+++++ ...+..|++||+.+++..... .+ +. .++|
T Consensus 550 ~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~-----v~--~~~~ 615 (1045)
T 1k32_A 550 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NN-----LT--DLRL 615 (1045)
T ss_dssp EECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EE-----EE--EEEE
T ss_pred EEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-------cC-----cc--eEEE
Confidence 122346678999999999988875 123557899999988754322 11 33 7889
Q ss_pred cCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1056 HPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1056 ~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+| ||++|++++.| .+++|++.+++
T Consensus 616 S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 616 SA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred CC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 99 78999998866 89999998876
No 40
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-35 Score=336.75 Aligned_cols=303 Identities=18% Similarity=0.302 Sum_probs=228.8
Q ss_pred CCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeecccc------------------CCeeEEEecCCCCe
Q 001248 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV------------------GGVNDIAFSHPNKQ 479 (1114)
Q Consensus 418 ~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~------------------~~V~~v~~s~d~~~ 479 (1114)
+|.+.|.+++|||||++||+|+ ++.++||++.+++.+. .+.+|. ..|.+++|+|+|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6889999999988665 343332 2499999999999
Q ss_pred eEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEE
Q 001248 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM 559 (1114)
Q Consensus 480 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 559 (1114)
+|++|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~----------------- 196 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRT----------------- 196 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTT-----------------
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCC-----------------
Confidence 799999999999999999999999999999999888765 345677777776666666643
Q ss_pred EEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeC
Q 001248 560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN 638 (1114)
Q Consensus 560 ~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~ 638 (1114)
++....+..+ ..+.+++|+| ++++|++++.
T Consensus 197 ----------------------------------------------~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~s~ 227 (393)
T 1erj_A 197 ----------------------------------------------GQCSLTLSIE---DGVTTVAVSPGDGKYIAAGSL 227 (393)
T ss_dssp ----------------------------------------------TEEEEEEECS---SCEEEEEECSTTCCEEEEEET
T ss_pred ----------------------------------------------CeeEEEEEcC---CCcEEEEEECCCCCEEEEEcC
Confidence 3333333222 2477899999 8999999999
Q ss_pred CCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccc
Q 001248 639 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI 718 (1114)
Q Consensus 639 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 718 (1114)
||.|++||+.++ .....+.....
T Consensus 228 d~~v~iwd~~~~-~~~~~~~~~~~-------------------------------------------------------- 250 (393)
T 1erj_A 228 DRAVRVWDSETG-FLVERLDSENE-------------------------------------------------------- 250 (393)
T ss_dssp TSCEEEEETTTC-CEEEEEC------------------------------------------------------------
T ss_pred CCcEEEEECCCC-cEEEeeccccc--------------------------------------------------------
Confidence 999999998876 22222210000
Q ss_pred cccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCcccccccc
Q 001248 719 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ 798 (1114)
Q Consensus 719 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 798 (1114)
...+|...|.+++|+|+++.|++++.|+.|++||+.....
T Consensus 251 ---------------------------~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~------------- 290 (393)
T 1erj_A 251 ---------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN------------- 290 (393)
T ss_dssp -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------
T ss_pred ---------------------------CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC-------------
Confidence 0012566777777777777777777777777776542100
Q ss_pred ccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEE
Q 001248 799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 878 (1114)
Q Consensus 799 ~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g 878 (1114)
..... ....+.+...+.+|...|.+++|+| ++.+|++|
T Consensus 291 ----------------------~~~~~-------------------~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg 328 (393)
T 1erj_A 291 ----------------------KSDSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSG 328 (393)
T ss_dssp ---------------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEE
T ss_pred ----------------------ccccc-------------------CCCCCcceEEEecccCcEEEEEECC-CCCEEEEE
Confidence 00000 0011233445667889999999999 89999999
Q ss_pred eCCCcEEEEEcccceEEEeecccccCeeEEEEcC------CCCEEEEEeCCCcEEEEeCCC
Q 001248 879 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------ALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 879 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~------d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+.||.|++||+.+++.+..+.+|...|.+++|++ ++++||+|+.|++|+||++..
T Consensus 329 s~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999999999999999999999999999986 688999999999999999865
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-35 Score=332.36 Aligned_cols=324 Identities=14% Similarity=0.180 Sum_probs=262.5
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
|.+.|.+++|||||++ ++++..++.+.+|+........ ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 6678999999999995 7777777777776655433322 1347999999999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeec--cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc--ceeEeeccccCE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPV 512 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v 512 (1114)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999876554433444 7999999999999999 79999999999999999887 567788899999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
.+++|++ ++.++++++.|+.|++||+++.+....+..+...+.+++|+|++ ++++++
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------~~l~~~ 201 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG---------------------TKLWTG 201 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------SEEEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC---------------------CEEEEE
Confidence 9999865 55799999999999999999877666666666666666666555 479999
Q ss_pred eCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCC
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1114)
+.|+.|++||+.+++.+..+... ..+.+++|+|+++++++++.++.|++||+.++.. .. +
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~-~--------------- 261 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQ-L--------------- 261 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EE-E---------------
T ss_pred ecCCcEEEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EE-E---------------
Confidence 99999999999999988887543 4689999999999999999999999999865410 00 0
Q ss_pred CCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccccc
Q 001248 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1114)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1114)
T Consensus 262 -------------------------------------------------------------------------------- 261 (337)
T 1gxr_A 262 -------------------------------------------------------------------------------- 261 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
..|...+.+++|+|++++
T Consensus 262 --------------------------------------------------------------~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 262 --------------------------------------------------------------HLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp --------------------------------------------------------------CCCSSCEEEEEECTTSSE
T ss_pred --------------------------------------------------------------cCCccceeEEEECCCCCE
Confidence 014556777777788888
Q ss_pred EEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 833 l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
|++++ ||.|++||+.+++.+... .|...|.+++|+| ++++|++++.||.|++|++.
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence 88777 788888888877766443 3778899999999 89999999999999999963
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.2e-35 Score=321.89 Aligned_cols=250 Identities=18% Similarity=0.273 Sum_probs=214.1
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
...+|.+.|++++|+|+|++ |++|+.||.|++|++.+++... .+.+|...|.+++|+|++
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDS 77 (312)
T ss_dssp EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred EEcccCCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCC
Confidence 34459999999999999995 9999999999999999887665 367899999999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|++|++||+++++.+..+..|...|
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 152 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred CEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcE
Confidence 999999999999999999988665 6889999999999999999 79999999999999999999999999999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC-CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
.+++|++ ++.++++++.|+.|++||+++......+.. +.. .+..++|+|+++++++
T Consensus 153 ~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 153 SAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---------------------PVSFVKFSPNGKYILA 209 (312)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC---------------------CEEEEEECTTSSEEEE
T ss_pred EEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC---------------------ceEEEEECCCCCEEEE
Confidence 9999865 557999999999999999987665443322 222 3445566666668999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc-CCCCEEEEEeCCCcEEEEEccCC
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++.|+.|++||+.+++.+..+..+..........++ +++.+|++|+.||.|++||+.++
T Consensus 210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 999999999999999999998876543333334444 67899999999999999999876
No 43
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=355.05 Aligned_cols=355 Identities=11% Similarity=0.072 Sum_probs=235.2
Q ss_pred CcceeEeccCCCCceEEEEcCCC---------CeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccC
Q 001248 348 PKTVTRTLNQGSSPMSMDFHPVQ---------QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 418 (1114)
Q Consensus 348 ~~~~~~~~~h~~~v~~v~~spdg---------~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 418 (1114)
..+...++.+.+.|++|+|+|++ + +||+|+.++..
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~----------------------------------- 166 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD----------------------------------- 166 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC-----------------------------------
Confidence 34455667789999999999997 5 58888755310
Q ss_pred CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceee-eeEeeccccCCeeEEEecCC------CCeeEEEEecCCCCE
Q 001248 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHP------NKQLCVITCGDDKTI 491 (1114)
Q Consensus 419 h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~d------~~~~~l~s~~~d~~i 491 (1114)
-..+|+++.||+++.|++|+|||+.+++... ...++.+|.+.|.+++|+|+ +. +|++++.|++|
T Consensus 167 -------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv 237 (524)
T 2j04_B 167 -------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI 237 (524)
T ss_dssp ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred -------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence 0136899999999999999999999876432 12346678899999999997 45 79999999999
Q ss_pred EEEeCCCCcc-----------eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCC-eeeecCCCCeeEEE
Q 001248 492 KVWDATNGAK-----------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTM 559 (1114)
Q Consensus 492 ~iwd~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~ 559 (1114)
++||+.++.. ..++.+|...|.+++|++. ..|++|+.||+|++||+++... ...+..|...|.++
T Consensus 238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 9999987642 2478899999999999753 4899999999999999987643 33466676666666
Q ss_pred --EEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEe
Q 001248 560 --AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 637 (1114)
Q Consensus 560 --~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 637 (1114)
+++++|. .+|++++.|++|++||+++++.+..+..+.....|.+++|+|+++.+++++
T Consensus 315 ~~~~s~~g~--------------------~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~ 374 (524)
T 2j04_B 315 STAYSDFED--------------------TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD 374 (524)
T ss_dssp EEECCTTSC--------------------CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC
T ss_pred EEEcCCCCC--------------------eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC
Confidence 3444431 479999999999999999988776665553323478999999999999999
Q ss_pred CCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccc
Q 001248 638 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 717 (1114)
Q Consensus 638 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 717 (1114)
.|++|++||++++. ....+.
T Consensus 375 ~d~tv~lwd~~~~~-~~~~l~----------------------------------------------------------- 394 (524)
T 2j04_B 375 GASSLRAVPSRAAF-AVHPLV----------------------------------------------------------- 394 (524)
T ss_dssp SSSEEEEEETTCTT-CCEEEE-----------------------------------------------------------
T ss_pred CCCcEEEEECcccc-cceeee-----------------------------------------------------------
Confidence 99999999987651 111110
Q ss_pred ccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccc
Q 001248 718 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP 797 (1114)
Q Consensus 718 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 797 (1114)
+
T Consensus 395 -------------------------------g------------------------------------------------ 395 (524)
T 2j04_B 395 -------------------------------S------------------------------------------------ 395 (524)
T ss_dssp -------------------------------E------------------------------------------------
T ss_pred -------------------------------c------------------------------------------------
Confidence 1
Q ss_pred cccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCC-----CCCCeEEEEEecCC
Q 001248 798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-----PPPAATFLAFHPQD 871 (1114)
Q Consensus 798 ~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp~d 871 (1114)
|...|.+++|+|+|++|++|+ ||+|++||+... .+..+.. +...+..++|+| +
T Consensus 396 -------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~ 454 (524)
T 2j04_B 396 -------------------RETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-K 454 (524)
T ss_dssp -------------------CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCS-S
T ss_pred -------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCC-C
Confidence 444455555555555555555 555555555432 2221111 112467889999 7
Q ss_pred CcEEEEEeCCCcEEEEEcc-cceEEEeecccccCeeEEEEcCCCC---EEEEEeCCCcEEEEeCCC
Q 001248 872 NNIIAIGMDDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~-~~~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~D~~v~iwd~~~ 933 (1114)
+..+. ... .+++|+.. ++.++..+.+|...|++|+|+|++. +||+|+.||+|+||++..
T Consensus 455 g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 455 DDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp SCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 76553 222 23444433 4677888999999999999999954 999999999999999976
No 44
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.4e-35 Score=321.78 Aligned_cols=291 Identities=21% Similarity=0.369 Sum_probs=244.7
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|...|.+++|+|+|++|++|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 478999999999999999999999999999999999887655 6789999999999999999 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
|+.+++++..+.+|...|.+++|++ ++.++++++.|+.|++||+++......+..+...+.+++|++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------- 162 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-------- 162 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--------
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC--------
Confidence 9999999999999999999999865 457999999999999999998877777777766666666666554
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
++++++.|+.|++||+.+++.+..+.... ...+..++|+|++++|++++.||.|++||+.++ +..
T Consensus 163 -------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~ 227 (312)
T 4ery_A 163 -------------LIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCL 227 (312)
T ss_dssp -------------EEEEEETTSCEEEEETTTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEE
T ss_pred -------------EEEEEeCCCcEEEEECCCCceeeEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEE
Confidence 79999999999999999998887775432 346889999999999999999999999998776 222
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
..+.+|..
T Consensus 228 ~~~~~~~~------------------------------------------------------------------------ 235 (312)
T 4ery_A 228 KTYTGHKN------------------------------------------------------------------------ 235 (312)
T ss_dssp EEECSSCC------------------------------------------------------------------------
T ss_pred EEEEecCC------------------------------------------------------------------------
Confidence 22221110
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
T Consensus 236 -------------------------------------------------------------------------------- 235 (312)
T 4ery_A 236 -------------------------------------------------------------------------------- 235 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe--CCCcEEEEEcc
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVR 890 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~--~dg~v~iwd~~ 890 (1114)
....+......+++++|++++ ||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++ .|++|++|+..
T Consensus 236 --~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 236 --EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp --SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred --ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEEEEccCCccEEEecCC
Confidence 000011122235677888888 89999999999999999999999999999999 899999987 69999999864
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-35 Score=330.63 Aligned_cols=320 Identities=12% Similarity=0.160 Sum_probs=257.1
Q ss_pred CCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC
Q 001248 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1114)
Q Consensus 419 h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 498 (1114)
|.+.|.+++|||||++++++..++.+.+|+........ ...+|...|.+++|+|+++ ++++++ |+.|++||+.+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI---NTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE---EEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc---eeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence 45689999999999999999887777776554432222 3447999999999999999 788888 99999999988
Q ss_pred Ccce---eEee--ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCC--eeeecCCCCeeEEEEEecCCCeEEee
Q 001248 499 GAKQ---YIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 499 ~~~~---~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
++.. ..+. +|...|.+++|++ +++++++++.|+.|++||+.+.+. ...+..+...+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~------------ 147 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL------------ 147 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEE------------
T ss_pred CCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEE------------
Confidence 7643 3333 7999999999865 557999999999999999987652 33344444444444
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
+|+|+++++++++.||.|++||+.+++.+..+..+ ...+.+++|+|++++|++++.||.|++||+.++.
T Consensus 148 ---------~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 216 (337)
T 1gxr_A 148 ---------AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH--TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216 (337)
T ss_dssp ---------EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ---------EECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecc--cCceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence 45555558999999999999999999999888765 4479999999999999999999999999987651
Q ss_pred cceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEe
Q 001248 652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL 731 (1114)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~ 731 (1114)
....+
T Consensus 217 -~~~~~-------------------------------------------------------------------------- 221 (337)
T 1gxr_A 217 -QLQQH-------------------------------------------------------------------------- 221 (337)
T ss_dssp -EEEEE--------------------------------------------------------------------------
T ss_pred -eEeee--------------------------------------------------------------------------
Confidence 11100
Q ss_pred ccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccccc
Q 001248 732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND 811 (1114)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~ 811 (1114)
T Consensus 222 -------------------------------------------------------------------------------- 221 (337)
T 1gxr_A 222 -------------------------------------------------------------------------------- 221 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 812 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 812 ~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
.+...+.+++|+|+++++++++ ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.
T Consensus 222 ----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred ----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECC
Confidence 0334466777777888888777 78888888877654 35667889999999999 89999999999999999999
Q ss_pred cceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 891 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
+++.+.. ..|...|++++|+|++++|++++.||.|++|++
T Consensus 296 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 296 YGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9887744 458899999999999999999999999999996
No 46
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1e-34 Score=331.42 Aligned_cols=275 Identities=14% Similarity=0.226 Sum_probs=206.2
Q ss_pred ceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 350 ~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
++.+.+.|.+.|+|++|||||++ ||+|+ ++.++||++.+++.+.......-.... ...........+...|.+++|+
T Consensus 56 ~~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 56 ELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAANKD-PENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp EEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccccc-cccccccccCCCceeEEEEEEC
Confidence 34566789999999999999995 88876 789999999999876532110000000 0000001112344569999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 509 (1114)
|||++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.++++...+. +.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 999999999999999999999987665 6889999999999999999 79999999999999999999888776 56
Q ss_pred cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
..+.+++|++. ++.++++++.|+.|++||+++......+.... .... .+...+..++|+|++++|
T Consensus 207 ~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-------------~~~~-~h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 207 DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-------------ESGT-GHKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp SCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC-------------------C-CCSSCEEEEEECTTSSEE
T ss_pred CCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccc-------------cCCC-CCCCCEEEEEECCCCCEE
Confidence 78999998652 55899999999999999998866554432100 0000 112345556666666689
Q ss_pred EEEeCCCeEEEEECCCcc------------eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 590 LAAGDDFSIKFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++++.|+.|++||+.+.. +...+.+| ...|.+++|++++.+|++++.|+.|++||..++
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999987632 34445444 457999999999999999999999999999877
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.3e-35 Score=340.09 Aligned_cols=346 Identities=12% Similarity=0.097 Sum_probs=258.3
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc
Q 001248 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500 (1114)
Q Consensus 421 ~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 500 (1114)
..+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345689999999999999999999999999876544 44455 4455668899999 79999999999999999999
Q ss_pred ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEE
Q 001248 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1114)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~ 580 (1114)
....+.+|...|.+++|++ ++.+|++++.|+.|++||+.+.+....+..|...|.+++|+|+++
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-------------- 194 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR-------------- 194 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT--------------
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC--------------
Confidence 9888899999999999876 457999999999999999999888888777777777777777665
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC-CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccc
Q 001248 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 659 (1114)
+|++++.|+.|++||+.+++.+..+..+. +...+.+++|.+++... ++..... .
T Consensus 195 -------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~--~------ 249 (420)
T 3vl1_A 195 -------NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------LHEISTS--K------ 249 (420)
T ss_dssp -------EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------CGGGCCC--C------
T ss_pred -------EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------eeecccC--c------
Confidence 79999999999999999999998887542 23345555554432211 0000000 0
Q ss_pred cccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcc
Q 001248 660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 739 (1114)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 739 (1114)
T Consensus 250 -------------------------------------------------------------------------------- 249 (420)
T 3vl1_A 250 -------------------------------------------------------------------------------- 249 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCC
Q 001248 740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 819 (1114)
Q Consensus 740 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~ 819 (1114)
+.+++|+|+++.+++++.||.|++||+.. +........ .|..
T Consensus 250 --------------v~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------------------~~~~~~~~~--~~~~ 291 (420)
T 3vl1_A 250 --------------KNNLEFGTYGKYVIAGHVSGVITVHNVFS----------------------KEQTIQLPS--KFTC 291 (420)
T ss_dssp --------------CCTTCSSCTTEEEEEEETTSCEEEEETTT----------------------CCEEEEECC--TTSS
T ss_pred --------------ccceEEcCCCCEEEEEcCCCeEEEEECCC----------------------CceeEEccc--ccCC
Confidence 00112334444444444455454444321 111110011 2677
Q ss_pred CccEEEEeeCCC-EEEEEe-CCeEEEEEcCCCcc-ccccCC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc---
Q 001248 820 AVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--- 892 (1114)
Q Consensus 820 ~v~~v~~s~d~~-~l~~~~-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~--- 892 (1114)
.|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...|.++.+ + ++++|++++.||.|++|++...
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCCCC
Confidence 889999999998 888888 89999999988754 566665 5667777755 5 6789999999999999998763
Q ss_pred ------eEEEeecccccCeeEEEEcCCCC---EEEEEeCCCcEEEEeCCC
Q 001248 893 ------EVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 893 ------~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~D~~v~iwd~~~ 933 (1114)
.....+.+|.+.|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22234667899999999999999 788888899999999875
No 48
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-36 Score=348.39 Aligned_cols=373 Identities=11% Similarity=0.139 Sum_probs=268.6
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCCeEEEEeCCCe
Q 001248 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHI 443 (1114)
Q Consensus 365 ~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~dg~ 443 (1114)
.|+|+++. +++++ .|+. +++.+.. +..+|.+.|++++|+| ++++||+|+.||+
T Consensus 34 ~f~~~~~~-~~~~~------~w~~-~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~ 87 (437)
T 3gre_A 34 EFGPIQEI-VRSPN------MGNL-RGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV 87 (437)
T ss_dssp GGCCCCCC-CCCCC------GGGC-CCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred hcCCcccc-ccccc------cccc-cceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence 47888885 66544 3773 3444442 2388999999999999 9999999999999
Q ss_pred EEEEEccC---CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC---CCcceeEeec----------
Q 001248 444 VQIYSYHG---GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFEG---------- 507 (1114)
Q Consensus 444 i~iwd~~~---~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~---------- 507 (1114)
|+|||+.+ +........+ +|...|.+++|+|+++ +|++|+.|++|++||+. +++.+..+.+
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN 164 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC
Confidence 99999987 5433222233 5999999999999999 79999999999999995 6665554443
Q ss_pred --cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC--CCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 508 --h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
+...+.++.+...+++.++++++.|+.|++||+++.+....+.. |...|.+++|+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~------------------- 225 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE------------------- 225 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT-------------------
T ss_pred cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC-------------------
Confidence 34556666655567789999999999999999998777666655 4455555555554
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc----CCCCEEEEEeCCCcEEEEEccCCccceeeccc
Q 001248 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN----KDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 659 (1114)
+++|++++.||.|++||+++++.+..+.... ...|.+++|+ +++.+|++++.||.|++||+.++ .....+.+
T Consensus 226 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~ 301 (437)
T 3gre_A 226 --CCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFIN 301 (437)
T ss_dssp --SCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEES
T ss_pred --CCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEc
Confidence 4589999999999999999999988886322 2468899555 56889999999999999999888 45555544
Q ss_pred cccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcc
Q 001248 660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 739 (1114)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 739 (1114)
|...
T Consensus 302 ~~~~---------------------------------------------------------------------------- 305 (437)
T 3gre_A 302 SDEQ---------------------------------------------------------------------------- 305 (437)
T ss_dssp SSSC----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 3321
Q ss_pred ccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCC
Q 001248 740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 819 (1114)
Q Consensus 740 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~ 819 (1114)
+..+.|+|+++.+. +. .+.+..|..
T Consensus 306 --------------~~~~~~~~~~~~l~----~~-------------------------------------~~~~~~~~~ 330 (437)
T 3gre_A 306 --------------PSMEHFLPIEKGLE----EL-------------------------------------NFCGIRSLN 330 (437)
T ss_dssp --------------CCGGGGSCBCSSGG----GC-------------------------------------CCCCCCSGG
T ss_pred --------------Cccceecccccccc----cc-------------------------------------eecccccCC
Confidence 11122233332220 00 011112778
Q ss_pred CccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCC---CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 820 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP---PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
.|.+++|+ ++++|++++ |+.|++||+.+++....+.+|. ..+....+++ ...+++.. |+...+...
T Consensus 331 ~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~ 400 (437)
T 3gre_A 331 ALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSV 400 (437)
T ss_dssp GGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------
T ss_pred ceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------ccccccccc
Confidence 89999999 888999998 9999999999999988887754 3456666776 55555443 333444455
Q ss_pred EeecccccCeeEEEEcCC--CCEEEEEeCCCcEEEEe
Q 001248 896 SKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWS 930 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d--~~~l~s~s~D~~v~iwd 930 (1114)
..+..|.+.|++++|+++ +.+|++|+.||+|+||+
T Consensus 401 ~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 401 DDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 666789999999999998 78999999999999995
No 49
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-34 Score=323.49 Aligned_cols=290 Identities=18% Similarity=0.292 Sum_probs=221.9
Q ss_pred eEeeccccCCeeEEEe-----cC-CCCeeEEEEecCCCCEEEEeCCCC-------cceeEeeccccCEEEEeeccCCCce
Q 001248 458 HLEIDAHVGGVNDIAF-----SH-PNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPVYSVCPHHKENIQ 524 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~-----s~-d~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~ 524 (1114)
...+.+|.+.|++++| ++ +++ +|+||+.|++|++||+.++ .+...+.+|...|.+++|++ ++.
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~--~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~--~~~ 89 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSP--VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ--ENC 89 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCC--EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS--STT
T ss_pred eeeeccchhhhhheeeEEEeecCCCCC--EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC--CCC
Confidence 3468899999999999 76 787 8999999999999998753 45677899999999999865 557
Q ss_pred EEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECC
Q 001248 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD 604 (1114)
Q Consensus 525 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 604 (1114)
++++++.|++|++||+++......+..|...|.+++|+|+++ ++++++.|+.|++||+.
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~---------------------~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR---------------------QILSAGAEREIKLWNIL 148 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT---------------------EEEEEETTSCEEEEESS
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC---------------------EEEEEcCCCEEEEEecc
Confidence 999999999999999998887777777777777777766665 79999999999999997
Q ss_pred CcceEEEeccCCCCCCcCeEEEcCCC----------CEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCC
Q 001248 605 SVQLLTSIDADGGLPASPRIRFNKDG----------CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674 (1114)
Q Consensus 605 ~~~~~~~~~~~~~~~~v~~~~~s~d~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1114)
............+...|.+++|+|++ .++++++.||.|++||.. . .....
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~-~~~~~------------------ 208 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F-QIRYT------------------ 208 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T-EEEEE------------------
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C-ceeEE------------------
Confidence 44333322223445678999999876 455555555555555521 1 00000
Q ss_pred ccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccce
Q 001248 675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754 (1114)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i 754 (1114)
T Consensus 209 -------------------------------------------------------------------------------- 208 (343)
T 2xzm_R 209 -------------------------------------------------------------------------------- 208 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEE
Q 001248 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 834 (1114)
Q Consensus 755 ~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~ 834 (1114)
+. +|...|.+++|+|+|++|+
T Consensus 209 ---------------------------------------------------------~~--~h~~~v~~~~~s~~g~~l~ 229 (343)
T 2xzm_R 209 ---------------------------------------------------------FK--AHESNVNHLSISPNGKYIA 229 (343)
T ss_dssp ---------------------------------------------------------EE--CCSSCEEEEEECTTSSEEE
T ss_pred ---------------------------------------------------------Ec--CccccceEEEECCCCCEEE
Confidence 00 1667788888888888888
Q ss_pred EEe-CCeEEEEEcCCC-ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE--eec-----------
Q 001248 835 SAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS--KLK----------- 899 (1114)
Q Consensus 835 ~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~--~l~----------- 899 (1114)
+++ ||+|++||+.+. .....+. +...|.+++|+| ++.++++| .|+.|++||+.+++... .+.
T Consensus 230 sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp-~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 230 TGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNP-KLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp EEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECS-SSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred EEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECC-CCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 888 888888888433 3333332 455699999999 88888765 57889999998765433 333
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~ 934 (1114)
+|...|++++|+|+|++|++|+.||+|++|+++++
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 78889999999999999999999999999998763
No 50
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=320.18 Aligned_cols=252 Identities=17% Similarity=0.250 Sum_probs=195.7
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccc-c-CCCCCeeEEEEcCC
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV-K-DPGVSVNRVIWSPD 431 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~h~~~V~~l~~spd 431 (1114)
..+|.+.|++++|+|+ +||+|+.|++|++||+.++...... .+ . +|...|.+++|+|+
T Consensus 10 ~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~-----------------~~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLID-----------------VLDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp EECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEE-----------------EECTTCCCSCEEEEEECTT
T ss_pred eccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEE-----------------EEecCCccCCEEEEEECCC
Confidence 3459999999999998 5999999999999999875321110 12 3 49999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCc----eeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC----ccee
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG----AKQY 503 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~ 503 (1114)
+++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+... +++.
T Consensus 70 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 9999999999999999986432 1223346889999999999999999 7999999999999999432 4567
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC--CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
.+.+|...|.+++|+++ +.+|++++.|++|++||.... .....+..|...|.+++|+|++.
T Consensus 148 ~~~~h~~~v~~v~~~p~--~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--------------- 210 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG--------------- 210 (330)
T ss_dssp EECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS---------------
T ss_pred EeccCCCceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC---------------
Confidence 88999999999998764 579999999999999998765 34456666776777766666521
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCc--------ceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDSV--------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+.++++++.|++|++||+..+ .....+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus 211 ----~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 211 ----VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp ----SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ----eeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 346899999999999998654 23333332 135579999999765 7899999999999998655
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.6e-34 Score=337.15 Aligned_cols=342 Identities=17% Similarity=0.295 Sum_probs=264.7
Q ss_pred cccCCCCCe-eEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 415 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 415 ~~~~h~~~V-~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
.+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++++ ++++|+.|++|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 467898875 66555 67899999999999999999988665 688999999999999887 5899999999999
Q ss_pred EeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCC-eEEeee
Q 001248 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-RTYQGF 572 (1114)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~-~~~~~~ 572 (1114)
||+.+++++..+.+|...|.+++|++.+++.++++++.|+.|++||+.+............ ...+...+++. ......
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGGGCTTEEEEE
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccCCCeEEEEEc
Confidence 9999999999999999999999998878889999999999999999987665443222211 11222223222 122222
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR 652 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~ 652 (1114)
......+.+++++++++++++.|+.|++||+.+++.+..+..| ...|.+++|+|+++++++++.||.|++||+.++ +
T Consensus 267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~ 343 (464)
T 3v7d_B 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDRIYSTIYDHERKRCISASMDTTIRIWDLENG-E 343 (464)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E
T ss_pred cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Confidence 2233344555788899999999999999999999999998766 457999999999999999999999999998766 2
Q ss_pred ceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEec
Q 001248 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1114)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1114)
.+..+.
T Consensus 344 ~~~~~~-------------------------------------------------------------------------- 349 (464)
T 3v7d_B 344 LMYTLQ-------------------------------------------------------------------------- 349 (464)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred EEEEEe--------------------------------------------------------------------------
Confidence 222111
Q ss_pred cCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccC
Q 001248 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1114)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 812 (1114)
T Consensus 350 -------------------------------------------------------------------------------- 349 (464)
T 3v7d_B 350 -------------------------------------------------------------------------------- 349 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 813 ~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
+|...|.+++++ +++|++++ ||+|++||+.++....... +...+..++|++ ++++|++|+ ||.|++||+.+
T Consensus 350 ---~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 350 ---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp ---CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTT
T ss_pred ---CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCC
Confidence 144555666664 46777777 7888888887766554443 556788899999 899999998 89999999999
Q ss_pred ceEEEe-ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 892 DEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 892 ~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
++.+.. +.+|...|++++|+ ++.++++++.|+.+.+|-+
T Consensus 422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 998876 67899999999997 4455666667776665543
No 52
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.6e-34 Score=332.70 Aligned_cols=317 Identities=20% Similarity=0.324 Sum_probs=267.0
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.|++|++|
T Consensus 113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVW 184 (445)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEE
T ss_pred EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEE
Confidence 46789887533 355579999999999999999999988665 688999999999998 45 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
|+.+++.+..+.+|...|.+++|+ +..+++++.||.|++||+.+.+....+..+...+.++.+ ++
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~--------- 249 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG--------- 249 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS---------
T ss_pred ECCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC---------
Confidence 999999999999999999999974 258999999999999999988877777777777766665 33
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccce
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 654 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~ 654 (1114)
+++++++.||.|++||+.+++.+..+..+ ...|.+++| ++.++++++.||.|++||+.++ +..
T Consensus 250 ------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~ 312 (445)
T 2ovr_B 250 ------------RRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCI 312 (445)
T ss_dssp ------------SCEEEEETTSCEEEEEGGGTEEEEEECCC--SSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred ------------CEEEEEcCCCEEEEEECCCCcEeEEecCC--CCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEE
Confidence 36999999999999999999999988765 447888888 8899999999999999998766 221
Q ss_pred eeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccC
Q 001248 655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL 734 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~ 734 (1114)
..+.+
T Consensus 313 ~~~~~--------------------------------------------------------------------------- 317 (445)
T 2ovr_B 313 HTLTG--------------------------------------------------------------------------- 317 (445)
T ss_dssp EEECC---------------------------------------------------------------------------
T ss_pred EEEcC---------------------------------------------------------------------------
Confidence 11100
Q ss_pred CCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
T Consensus 318 -------------------------------------------------------------------------------- 317 (445)
T 2ovr_B 318 -------------------------------------------------------------------------------- 317 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCC---CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
|...+.++.+ +++++++++ ||.|++||+.+++.+..+.. |...|++++|+ +++|++|+.||.|++||+.
T Consensus 318 --~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 318 --HQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp --CCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred --CcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECC
Confidence 3333444444 466888888 89999999998888888775 78889999995 4699999999999999999
Q ss_pred cceEEEee-----cccccCeeEEEEcCCCCEEEEEeCCCc----EEEEeCCC
Q 001248 891 VDEVKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG 933 (1114)
Q Consensus 891 ~~~~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~D~~----v~iwd~~~ 933 (1114)
+++.+..+ .+|.+.|++++|+|++.+|++|+.||+ |.|||++.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99988887 578899999999999999999999998 99999986
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-36 Score=349.76 Aligned_cols=357 Identities=11% Similarity=0.046 Sum_probs=245.8
Q ss_pred CCCCeeEEEEcCCC---------CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCC
Q 001248 419 PGVSVNRVIWSPDG---------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK 489 (1114)
Q Consensus 419 h~~~V~~l~~spdg---------~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~ 489 (1114)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 46799999999987 899999866420 01368888 789999999
Q ss_pred CEEEEeCCCCcce----eEeeccccCEEEEeeccC----CCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEE
Q 001248 490 TIKVWDATNGAKQ----YIFEGHEAPVYSVCPHHK----ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 561 (1114)
Q Consensus 490 ~i~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 561 (1114)
+|+|||+.++++. .++.+|.+.|.+++|++. +++.+|++++.||+|++||+.........
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~------------ 251 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV------------ 251 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE------------
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc------------
Confidence 9999999887753 356778899999999986 44679999999999999999754321000
Q ss_pred ecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCc
Q 001248 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 641 (1114)
Q Consensus 562 s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~ 641 (1114)
.+ ... +....+..| ...|.+++|++++ .|++|+.||+
T Consensus 252 ---------------------------~~-----------~~~--~p~~~l~~h--~~~v~sv~~s~~~-~lasgs~Dgt 288 (524)
T 2j04_B 252 ---------------------------FK-----------MCE--KPSLTLSLA--DSLITTFDFLSPT-TVVCGFKNGF 288 (524)
T ss_dssp ---------------------------EE-----------CCC--SCSEEECCT--TTCEEEEEESSSS-EEEEEETTSE
T ss_pred ---------------------------ce-----------eec--CceEEEEcC--CCCEEEEEecCCC-eEEEEeCCCE
Confidence 00 000 011223333 3478999999864 8999999999
Q ss_pred EEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccccccc
Q 001248 642 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 721 (1114)
Q Consensus 642 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (1114)
|++||+.++......+.
T Consensus 289 V~lWD~~~~~~~~~~~~--------------------------------------------------------------- 305 (524)
T 2j04_B 289 VAEFDLTDPEVPSFYDQ--------------------------------------------------------------- 305 (524)
T ss_dssp EEEEETTBCSSCSEEEE---------------------------------------------------------------
T ss_pred EEEEECCCCCCceEEee---------------------------------------------------------------
Confidence 99999865411100000
Q ss_pred CCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccC
Q 001248 722 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1114)
Q Consensus 722 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~ 801 (1114)
T Consensus 306 -------------------------------------------------------------------------------- 305 (524)
T 2j04_B 306 -------------------------------------------------------------------------------- 305 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccCCCCCCCCCccEE--EEeeCC-CEEEEEe-CCeEEEEEcCCCccccccCCCCC--CeEEEEEecCCCcEE
Q 001248 802 PPSGIMMTNDVTDSNPEEAVPCF--ALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNII 875 (1114)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~v~~v--~~s~d~-~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~l 875 (1114)
+|...|.++ ++++++ .+||+++ |++|+|||+.+++++.++.+|.. .|.+++|+| ++..+
T Consensus 306 --------------~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l 370 (524)
T 2j04_B 306 --------------VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSY 370 (524)
T ss_dssp --------------CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEE
T ss_pred --------------cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeE
Confidence 156667777 467777 7888888 89999999988887777766653 588999999 88899
Q ss_pred EEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCC--CCCCC
Q 001248 876 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR--TPTAQ 953 (1114)
Q Consensus 876 a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~ 953 (1114)
++++.|++|++||+.++.++..+.+|.+.|++|+|+|+|++|++|+.|++|++||+... .+...... .....
T Consensus 371 ~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~------~~~~~~~~~~~~~~~ 444 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR------LLHGIKNSSATQKSL 444 (524)
T ss_dssp EEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS------TTTCC------CCCC
T ss_pred EEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh------hccccccCccceeee
Confidence 99999999999999999888889999999999999999999999999999999998652 11111110 00112
Q ss_pred CceEEEEccCCcEEEEEeCCeEEEEEcC-CCceeeeeecCCCCcCeeEEEECCCCC---EEEEEEcCCeEEEEEcCC
Q 001248 954 SDTRVQFHQDQIHFLVVHETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 954 ~i~~v~fspdg~~l~~~~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~---~l~s~s~Dg~I~vwd~~~ 1026 (1114)
.+..++|+|+|..+.... .+.+|+.. ++.++..+. +|...|.+++|+|++. +||+|+.||.|+||++.-
T Consensus 445 ~v~~v~~sp~g~~~~~~~--~~~~~~~~~~g~~~~~l~--gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 445 RLWKWDYSIKDDKYRIDS--SYEVYPLTVNDVSKAKID--AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EEEECBCCSSSCEEEECC--CCCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EEEEeccCCCCCeEEccC--CceecccccCCcceeeec--CCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 457899999999653322 23344332 355555554 8899999999999964 999999999999999764
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.2e-34 Score=318.95 Aligned_cols=307 Identities=18% Similarity=0.264 Sum_probs=248.5
Q ss_pred eeEecc-CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 351 VTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 351 ~~~~~~-h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
+..+|. |.+.|++|+|+|++..+|+||+.||+|+|||+.+++..... ....+.+|...|.+++|+
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEEC
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEEC
Confidence 344454 99999999999985436999999999999999876543211 112578999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce-eEeecc
Q 001248 430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGH 508 (1114)
Q Consensus 430 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~h 508 (1114)
|||++|++++.|+.|++|+........ ....+...+..+.+++++. ++++++.|+.+++||+...... ..+.+|
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~ 170 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESH 170 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred CCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccc
Confidence 999999999999999999999877554 5667888999999999999 7999999999999998765543 455789
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
...+..++|++.....++++++.|+.|++||+++......+..|...|.+++|+|+++ +
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~---------------------~ 229 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS---------------------L 229 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------------------E
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC---------------------E
Confidence 9999999998888778999999999999999998877777777777777776666655 7
Q ss_pred EEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCC
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 668 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1114)
|++++.|+.|++||+.+.+.+..+..+. .+.+++|+|++.++ +++.|+.|++||+.++ .....+..+...
T Consensus 230 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~-~~~~~~~~~~~~----- 299 (340)
T 4aow_A 230 CASGGKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSPNRYWL-CAATGPSIKIWDLEGK-IIVDELKQEVIS----- 299 (340)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEECSS---CEEEEEECSSSSEE-EEEETTEEEEEETTTT-EEEEEECCC--------
T ss_pred EEEEeCCCeEEEEEeccCceeeeecCCc---eEEeeecCCCCcee-eccCCCEEEEEECCCC-eEEEecccccee-----
Confidence 9999999999999999999998887553 58999999988765 5566899999998876 333333211100
Q ss_pred CCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcc
Q 001248 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1114)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1114)
....
T Consensus 300 ----------------------------------------------------------------------------~~~~ 303 (340)
T 4aow_A 300 ----------------------------------------------------------------------------TSSK 303 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------eecc
Confidence 0002
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEeeccc
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 783 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~ 783 (1114)
.|...|.+++|+|+|++|++++.||.|+||++..+
T Consensus 304 ~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 304 AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 37789999999999999999999999999998743
No 55
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3.5e-33 Score=359.65 Aligned_cols=491 Identities=14% Similarity=0.072 Sum_probs=351.8
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecC------CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCe-
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNV------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV- 423 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~d------g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V- 423 (1114)
..++..|...|.+++|||||++ ||+++.+ ..|++||+.+++.. .+..|...+
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~--------------------~lt~~~~~~~ 103 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIK--------------------RITYFSGKST 103 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEE--------------------ECCCCCEEEE
T ss_pred EEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeE--------------------EcccCCCccc
Confidence 3455569999999999999997 5554332 37999999987643 267788888
Q ss_pred ------eEEEEcCCCCeEEEEeCC------CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC----
Q 001248 424 ------NRVIWSPDGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD---- 487 (1114)
Q Consensus 424 ------~~l~~spdg~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~---- 487 (1114)
.+++|||||+++++++.+ ..|.+|++.+++... +..+ ....++|+| | ++++++.
T Consensus 104 ~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~l~~~~~~~~~ 173 (1045)
T 1k32_A 104 GRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---RRVIGRNTFEL 173 (1045)
T ss_dssp TTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---EEEEEESCSCC
T ss_pred ccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---EEEEeccCCCc
Confidence 999999999977777644 358888888776432 3333 345788999 6 3566532
Q ss_pred --------CCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCC-CeeeecCCCCeeEE
Q 001248 488 --------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTT 558 (1114)
Q Consensus 488 --------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~ 558 (1114)
+...++|....+.....+.+|...+.++.|++ + .++++++.|+.+.+|.+.... ....+..+. .+..
T Consensus 174 ~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~ 249 (1045)
T 1k32_A 174 PHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYP 249 (1045)
T ss_dssp TTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCE
T ss_pred cccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccce
Confidence 34566775444455666789999999999864 3 577788889999999876422 222222222 2333
Q ss_pred EEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC---------CCCCcCeEEEc-C
Q 001248 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG---------GLPASPRIRFN-K 628 (1114)
Q Consensus 559 ~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s-~ 628 (1114)
.+|+||| ++++.+ .++.|++||..... +..+..+. +...+.+++|+ |
T Consensus 250 ~~~SpDG---------------------~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p 306 (1045)
T 1k32_A 250 RHLNTDG---------------------RRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPL 306 (1045)
T ss_dssp EEEEESS---------------------SCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEEC
T ss_pred eeEcCCC---------------------CEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCC
Confidence 3445544 456666 48999999995443 44554321 11258899999 9
Q ss_pred CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCc
Q 001248 629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1114)
Q Consensus 629 d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1114)
||+.|++++ ++.+.+|+..++. ... +.
T Consensus 307 dG~~la~~~-~~~i~~~~~~~~~-~~~-~~-------------------------------------------------- 333 (1045)
T 1k32_A 307 DGDLIAFVS-RGQAFIQDVSGTY-VLK-VP-------------------------------------------------- 333 (1045)
T ss_dssp GGGCEEEEE-TTEEEEECTTSSB-EEE-CS--------------------------------------------------
T ss_pred CCCEEEEEE-cCEEEEEcCCCCc-eEE-cc--------------------------------------------------
Confidence 999999888 7889999876552 111 10
Q ss_pred cccCCCcccccccCCCceeEEEeccCCCCccccccccCcccccc-ceEEEEEccCcceeeecccCceEE-EEeecccccC
Q 001248 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT-KISRLIFTNSGNAILALASNAIHL-LWKWQRTERN 786 (1114)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~~~~l~~~~~dg~i~-vw~~~~~~~~ 786 (1114)
.+.. .+..++|+ +|+.++.++.++.+. +|++.
T Consensus 334 ----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~----- 367 (1045)
T 1k32_A 334 ----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR----- 367 (1045)
T ss_dssp ----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT-----
T ss_pred ----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC-----
Confidence 1333 67888999 999898888877777 76654
Q ss_pred CCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEE
Q 001248 787 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFL 865 (1114)
Q Consensus 787 ~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l 865 (1114)
++.... +. ++...+..++|+|||++|++++ ++.|++||+.+++....+.+|...+.++
T Consensus 368 -----------------~~~~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~ 426 (1045)
T 1k32_A 368 -----------------TGKAEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF 426 (1045)
T ss_dssp -----------------TCCEEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred -----------------CCCceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce
Confidence 222221 11 2677899999999999999998 7899999999998877777888899999
Q ss_pred EEecCCCcEEEEEeCCC----------cEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001248 866 AFHPQDNNIIAIGMDDS----------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 935 (1114)
Q Consensus 866 ~~sp~d~~~la~g~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~ 935 (1114)
+||| ||++||+++.++ .|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|+.....
T Consensus 427 ~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 427 TISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp EECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred EECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccc
Confidence 9999 899888887654 99999999887 67788898899999999999999999998888888754322
Q ss_pred cccc---------------cc--c-----------ccCCC-------CCCCCCCceEEEEccCCcEEEE-----------
Q 001248 936 KQKN---------------RF--L-----------QIPTG-------RTPTAQSDTRVQFHQDQIHFLV----------- 969 (1114)
Q Consensus 936 ~~~~---------------~~--~-----------~~~~~-------~~~~~~~i~~v~fspdg~~l~~----------- 969 (1114)
.... .. + -...+ .....+.+..++|+|||+++++
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~ 584 (1045)
T 1k32_A 505 FSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYY 584 (1045)
T ss_dssp EECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHH
T ss_pred cccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccc
Confidence 1000 00 0 00000 0011245788999999998874
Q ss_pred -E--eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 970 -V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 970 -~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
+ ....+.+||+.+++..... ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 585 ~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 585 QGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 2447889999888764332 468899999999999999866 89999998877
No 56
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=321.07 Aligned_cols=291 Identities=13% Similarity=0.167 Sum_probs=224.0
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
+|...|.++.|+++ .|++++.|+.|++|++..... ..... +...+|...|.+++|+|
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------------~~~~~-~~~~~h~~~v~~v~~sp 68 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------------TLIDV-LDETAHKKAIRSVAWRP 68 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------------EEEEE-ECTTCCCSCEEEEEECT
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------------EEEEE-EecCCccCCEEEEEECC
Confidence 48899999999988 899999999999999753210 01110 11113888999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCC-------CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc----ceEEE
Q 001248 829 NDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----DEVKS 896 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~----~~~~~ 896 (1114)
++++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++++||+|+.|++|++||+.. .+++.
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~ 147 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECIS 147 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence 999999999 99999999853 345667889999999999999 899999999999999999943 35678
Q ss_pred eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC--CcEEEE-EeCC
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLV-VHET 973 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd--g~~l~~-~~d~ 973 (1114)
.+.+|...|++++|+|++.+|++++.|++|++||+.++. ..++....+|. ..|.+++|+|+ +.+|++ +.|+
T Consensus 148 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHE---GTVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCS---SCEEEEEECCSSSSCEEEEEETTS
T ss_pred EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCC---CcEEEEEecCCCCeeEEEEEeCCC
Confidence 899999999999999999999999999999999987642 12344556665 48999999999 778888 6899
Q ss_pred eEEEEEcCCC--------ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee--eEEeCCCcccCCCC
Q 001248 974 QLAIFETTKL--------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAGV 1043 (1114)
Q Consensus 974 ~i~iwd~~~~--------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~--~~~~~~~~~~~~~~ 1043 (1114)
.|++||+.++ .+...+. ..|...|.+++|++++ +|++++.||.|+|||..+++. ..... .+|
T Consensus 222 ~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~------~~h 293 (330)
T 2hes_X 222 TVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA------LCH 293 (330)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES------CTT
T ss_pred eEEEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc------ccc
Confidence 9999998765 2222222 3489999999999765 899999999999999988743 32221 133
Q ss_pred CCCCccceEEEecCC-CCCeEEEEeCCCcEEEEeccC
Q 001248 1044 SSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1044 ~~~~v~~~~~~~~~~-d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
....+. +++|+|. ++++|++|+.||+|++|++.+
T Consensus 294 ~~~~v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEIN--VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 232355 8899985 578999999999999999865
No 57
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=8.1e-34 Score=317.99 Aligned_cols=211 Identities=19% Similarity=0.294 Sum_probs=178.1
Q ss_pred cccCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEccCCcee--eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 415 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spd-g~~las~~~dg~i~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
+|.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i 110 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL 110 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence 58899999999999997 689999999999999999876432 23446889999999999999999 79999999999
Q ss_pred EEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCee-eecCCCCeeEEEEEecCCCeEEe
Q 001248 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
++|+...+........+...+..+.+.+ ++.++++++.|+.+++||+....... ....+...+..+++++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~---- 184 (340)
T 4aow_A 111 RLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---- 184 (340)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS----
T ss_pred eEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC----
Confidence 9999999998888888888888888654 44789999999999999987644332 3344556666666665543
Q ss_pred eecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
..++++++.|+.|++||+.+++.+..+..| ...|.+++|+|++++|++++.||.|++||+.+.
T Consensus 185 ---------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 185 ---------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGH--TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp ---------------SCEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ---------------CcEEEEEcCCCEEEEEECCCCceeeEecCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 235788999999999999999999988866 457999999999999999999999999998765
No 58
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.4e-33 Score=326.68 Aligned_cols=319 Identities=16% Similarity=0.285 Sum_probs=264.2
Q ss_pred EeccCCCCc-eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 353 RTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 353 ~~~~h~~~v-~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
...+|.+.| +| ++++|++ |++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+
T Consensus 113 ~l~~h~~~v~~~--~~~~g~~-l~sg~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGNR-IVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMR-- 168 (445)
T ss_dssp EEECSTTSCEEE--EEEETTE-EEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEE--
T ss_pred EecccCCCcEEE--EEEcCCE-EEEEECCCcEEEEECCCCcEEE-------------------EEcCCCCCEEEEEec--
Confidence 444588875 55 5556884 9999999999999999998776 378999999999997
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccC
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~ 511 (1114)
+++|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|...
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 241 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAA 241 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCccc
Confidence 6799999999999999999988665 688999999999995 45 6999999999999999999999999999999
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
|.++++ ++.++++++.||.|++||+++......+..+...+.++.+ ++ .++++
T Consensus 242 v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~---------------------~~l~~ 294 (445)
T 2ovr_B 242 VRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG---------------------IHVVS 294 (445)
T ss_dssp EEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS---------------------SEEEE
T ss_pred EEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC---------------------CEEEE
Confidence 999987 4478999999999999999988777777777777776665 33 47999
Q ss_pred EeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCC
Q 001248 592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS 671 (1114)
Q Consensus 592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1114)
++.|+.|++||+.+++.+..+..+. ..+.++.+ +++++++++.||.|++||+.++ +....+..+
T Consensus 295 ~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~----------- 358 (445)
T 2ovr_B 295 GSLDTSIRVWDVETGNCIHTLTGHQ--SLTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQGP----------- 358 (445)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCC--SCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECST-----------
T ss_pred EeCCCeEEEEECCCCCEEEEEcCCc--ccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEccC-----------
Confidence 9999999999999999999887664 35655555 6789999999999999998766 222211100
Q ss_pred CCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccc
Q 001248 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA 751 (1114)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 751 (1114)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
..|...|.+++++ ++
T Consensus 359 ---------------------------------------------------------------~~~~~~v~~~~~~--~~ 373 (445)
T 2ovr_B 359 ---------------------------------------------------------------NKHQSAVTCLQFN--KN 373 (445)
T ss_dssp ---------------------------------------------------------------TSCSSCEEEEEEC--SS
T ss_pred ---------------------------------------------------------------CCCCCCEEEEEEC--CC
Confidence 0145567777774 56
Q ss_pred EEEEEe-CCeEEEEEcCCCcccccc-----CCCCCCeEEEEEecCCCcEEEEEeCCCc----EEEEEccc
Q 001248 832 YVMSAS-GGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS----IQIYNVRV 891 (1114)
Q Consensus 832 ~l~~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~sp~d~~~la~g~~dg~----v~iwd~~~ 891 (1114)
+|++++ ||.|++||+.+++.+..+ ..+...|.+++|+| ++.++|+|+.||+ |.+||+..
T Consensus 374 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 888888 889999999888887776 46788899999999 9999999999998 99999864
No 59
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-35 Score=343.52 Aligned_cols=386 Identities=14% Similarity=0.190 Sum_probs=283.2
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEee-ccccCCeeEEEecC-CCCeeEEEEecCCCCEEEEeCCC---Cc-
Q 001248 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATN---GA- 500 (1114)
Q Consensus 427 ~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l-~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~---~~- 500 (1114)
.|+|+++.+++++ .|+. +++.+. .+ .+|.+.|++++|+| +++ +|++|+.|++|++||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~------~w~~-~g~~~~---~~~~~h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNL-RGKLIA---TLMENEPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp GGCCCCCCCCCCC------GGGC-CCCEEE---EECTTTTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred hcCCccccccccc------cccc-cceEEe---eeccCCCCceEEEEECCCCCC--EEEEecCCceEEEeECcccccCcc
Confidence 4788888888765 3774 344444 56 78999999999999 998 799999999999999877 43
Q ss_pred --ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcC---CCCCeeeecCCCCeeEEEEEecCCCeEEeeeccc
Q 001248 501 --KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575 (1114)
Q Consensus 501 --~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~ 575 (1114)
....+ +|...|.+++|++ ++.+|++++.||.|++||++ .+........+ .+..+.+++++ ...
T Consensus 102 ~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~-------~~~ 169 (437)
T 3gre_A 102 YSSSLTY-DCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG-------KNE 169 (437)
T ss_dssp CSCSEEE-ECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-------SCC
T ss_pred cceeeec-cCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-------ccc
Confidence 23333 4999999999875 55799999999999999995 44444433333 67777777643 122
Q ss_pred ceeEEE--ecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccc
Q 001248 576 SLGVVQ--FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 576 ~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
.+.++. ++++++++++++.|+.|++||+.+++.+..+..+.+...|.+++|+|++++|++++.||.|++||+.++ ..
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~ 248 (437)
T 3gre_A 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VL 248 (437)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EE
T ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cE
Confidence 445555 668899999999999999999999999999987434558999999999999999999999999998765 22
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
+..+..
T Consensus 249 ~~~~~~-------------------------------------------------------------------------- 254 (437)
T 3gre_A 249 IRSWSF-------------------------------------------------------------------------- 254 (437)
T ss_dssp EEEEBC--------------------------------------------------------------------------
T ss_pred EEEEec--------------------------------------------------------------------------
Confidence 221100
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
.+...|.+++++|.
T Consensus 255 ---------------~~~~~v~~~~~~~~--------------------------------------------------- 268 (437)
T 3gre_A 255 ---------------GDHAPITHVEVCQF--------------------------------------------------- 268 (437)
T ss_dssp ---------------TTCEEEEEEEECTT---------------------------------------------------
T ss_pred ---------------CCCCceEEEEeccc---------------------------------------------------
Confidence 02233444443322
Q ss_pred CCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
|++++++|++++ ||.|++||+.+++.+..+.+|...+..+.|+| +++.+ .+.
T Consensus 269 ------------~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~~~---------- 321 (437)
T 3gre_A 269 ------------YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-IEKGL----EEL---------- 321 (437)
T ss_dssp ------------TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-BCSSG----GGC----------
T ss_pred ------------cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-ccccc----ccc----------
Confidence 235677888888 89999999999999999999999999999999 65554 111
Q ss_pred eEEEeecc--cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 893 EVKSKLKG--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 893 ~~~~~l~~--h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
.+.+ |...|++++|+ ++++|++++.|++|++||+.+++.. ....++...........++++..+++..
T Consensus 322 ----~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 322 ----NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS-----KAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp ----CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC-----EEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred ----eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc-----eEEecccccCceEEEEEeecceEEEEEe
Confidence 1445 99999999999 8899999999999999999986542 2333333222345666677766665544
Q ss_pred eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCC--CCEEEEEEcCCeEEEEE
Q 001248 971 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 971 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~s~Dg~I~vwd 1023 (1114)
|+.......... ..|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 392 -------~~~~~~~~~~~~--~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 -------MKRTSTHSVDDS--LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------CC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred -------cccccccccCcc--cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 223333333222 368999999999998 78999999999999995
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.6e-33 Score=326.58 Aligned_cols=318 Identities=15% Similarity=0.247 Sum_probs=263.5
Q ss_pred EeccCCCCc-eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 353 RTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 353 ~~~~h~~~v-~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
...+|.+.| .|+.| +++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+
T Consensus 116 ~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~-------------------~~~~h~~~V~~l~~~~~ 173 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLL-------------------QLSGHDGGVWALKYAHG 173 (464)
T ss_dssp EEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEE-------------------EECCCSSCEEEEEECST
T ss_pred EEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEE-------------------EEeCCCcCEEEEEEcCC
Confidence 444588775 66666 456 59999999999999999998776 37799999999999999
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecC--CCCeeEEEEecCCCCEEEEeCCCCcc--------
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK-------- 501 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~-------- 501 (1114)
+ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++|+.|++|++||+.++..
T Consensus 174 ~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 247 (464)
T 3v7d_B 174 G-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEH 247 (464)
T ss_dssp T-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------C
T ss_pred C-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccccC
Confidence 8 99999999999999999988665 6889999999999994 556 799999999999999987653
Q ss_pred ---------------eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCC
Q 001248 502 ---------------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 566 (1114)
Q Consensus 502 ---------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 566 (1114)
+..+.+|...|.++. +++.++++++.|+.|++||+.+.+....+..|...|.+++|+|++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 248 DYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 323 (464)
T ss_dssp CSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT
T ss_pred CcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC
Confidence 456788999998875 3447999999999999999998877777777777777776666654
Q ss_pred eEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEE
Q 001248 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA 646 (1114)
Q Consensus 567 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd 646 (1114)
++++++.||.|++||+.+++.+..+..|. ..|.+++|+ +.+|++++.||.|++||
T Consensus 324 ---------------------~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~--~~~l~s~s~dg~v~vwd 378 (464)
T 3v7d_B 324 ---------------------RCISASMDTTIRIWDLENGELMYTLQGHT--ALVGLLRLS--DKFLVSAAADGSIRGWD 378 (464)
T ss_dssp ---------------------EEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred ---------------------EEEEEeCCCcEEEEECCCCcEEEEEeCCC--CcEEEEEEc--CCEEEEEeCCCcEEEEE
Confidence 79999999999999999999999998664 478899987 58999999999999999
Q ss_pred ccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCce
Q 001248 647 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS 726 (1114)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 726 (1114)
+.++..... .
T Consensus 379 ~~~~~~~~~-~--------------------------------------------------------------------- 388 (464)
T 3v7d_B 379 ANDYSRKFS-Y--------------------------------------------------------------------- 388 (464)
T ss_dssp TTTCCEEEE-E---------------------------------------------------------------------
T ss_pred CCCCceeee-e---------------------------------------------------------------------
Confidence 865411000 0
Q ss_pred eEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCc
Q 001248 727 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI 806 (1114)
Q Consensus 727 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~ 806 (1114)
T Consensus 389 -------------------------------------------------------------------------------- 388 (464)
T 3v7d_B 389 -------------------------------------------------------------------------------- 388 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccc-cCCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001248 807 MMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 885 (1114)
Q Consensus 807 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~ 885 (1114)
.+...+..++++++++++++++||.|++||+.+++.+.. +..|...|.+++|+ ++.++++++.||.+.
T Consensus 389 ---------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~ 457 (464)
T 3v7d_B 389 ---------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSF 457 (464)
T ss_dssp ---------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEE
T ss_pred ---------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEE
Confidence 033445678899999999999999999999999998876 67788999999997 467777788888766
Q ss_pred EEE
Q 001248 886 IYN 888 (1114)
Q Consensus 886 iwd 888 (1114)
+|-
T Consensus 458 i~~ 460 (464)
T 3v7d_B 458 LEI 460 (464)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 61
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-33 Score=319.12 Aligned_cols=302 Identities=16% Similarity=0.247 Sum_probs=252.1
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|.+.|++++|+|+|++|++++.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999988665 6889999999999999999 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecC-----CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEE
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
|+.+++.+..+. |...|.+++|++ ++.++++++.+ +.|++||+........+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~-------------------- 158 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHEL-------------------- 158 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE--------------------
T ss_pred ECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceee--------------------
Confidence 999999999888 889999999865 55799999988 99999998754322110
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
.. .....+..+..+.....+.+++|+|++++|++++.||.|++||+.+
T Consensus 159 --------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 159 --------------------TK------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp --------------------EE------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred --------------------cc------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 00 0111222333333334689999999999999999999999999865
Q ss_pred CccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEE
Q 001248 650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 729 (1114)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 729 (1114)
.......+.
T Consensus 207 ~~~~~~~~~----------------------------------------------------------------------- 215 (369)
T 3zwl_B 207 NYEYVDSID----------------------------------------------------------------------- 215 (369)
T ss_dssp TTEEEEEEE-----------------------------------------------------------------------
T ss_pred CcEeEEEEe-----------------------------------------------------------------------
Confidence 311111110
Q ss_pred EeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccc
Q 001248 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809 (1114)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 809 (1114)
T Consensus 216 -------------------------------------------------------------------------------- 215 (369)
T 3zwl_B 216 -------------------------------------------------------------------------------- 215 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC------
Q 001248 810 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------ 882 (1114)
Q Consensus 810 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg------ 882 (1114)
.|...|.+++|+|++++|++++ |+.|++||+.+++.+..+. +...+.+++|+| ++.++++++.++
T Consensus 216 ------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 287 (369)
T 3zwl_B 216 ------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTT 287 (369)
T ss_dssp ------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC------
T ss_pred ------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEE
Confidence 1556677888888888888888 8899999998888887777 677899999999 899999999888
Q ss_pred --------cEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001248 883 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE 935 (1114)
Q Consensus 883 --------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~ 935 (1114)
.+++||+.+++.+..+.+|...|++++|+|++++|++++.||+|++|+++.+.
T Consensus 288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 89999999999999999999999999999999999999999999999998743
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.8e-33 Score=346.80 Aligned_cols=259 Identities=21% Similarity=0.308 Sum_probs=214.9
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
..+|.+.|++++|+|++..+|+||+.||+|+|||+.++.... ......+.+|...|.+++|+|+|+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--------------~~~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--------------GVAQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--------------CEEEEEEECCSSCEEEEEECTTSS
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--------------ccccceecCCCCcEEEEEECCCCC
Confidence 345999999999999876579999999999999997643211 001114789999999999999999
Q ss_pred eEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe---ecccc
Q 001248 434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHEA 510 (1114)
Q Consensus 434 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~h~~ 510 (1114)
+|++|+.||+|+|||+.++.... .+.+|...|.+++|+|+++ +|++|+.|++|++||+......... .+|..
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD 518 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred EEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence 99999999999999999987665 6889999999999999999 7999999999999997654332222 46899
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEE
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~ 590 (1114)
.|.+++|++......+++++.|++|++||+++......+..|...|.+++|+|+++ +|+
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~---------------------~l~ 577 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS---------------------LCA 577 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------------------EEE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC---------------------EEE
Confidence 99999998876557899999999999999998877777777777777776666665 799
Q ss_pred EEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
+++.||.|++||+.+++.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.++ ..+..+
T Consensus 578 sg~~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~ 639 (694)
T 3dm0_A 578 SGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDL 639 (694)
T ss_dssp EEETTSBCEEEETTTTEEEECCBCS---SCEEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEE
T ss_pred EEeCCCeEEEEECCCCceEEEecCC---CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhh
Confidence 9999999999999999988777643 3589999999999888776 466999999887 444444
No 63
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.2e-34 Score=326.30 Aligned_cols=318 Identities=14% Similarity=0.197 Sum_probs=219.2
Q ss_pred cccCCCCCeeEEEEcCC----CCeEEEEeCCCeEEEEEccCCceeeeeEeec--cccCCeeEEEecCC----CCeeEEEE
Q 001248 415 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHP----NKQLCVIT 484 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spd----g~~las~~~dg~i~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~d----~~~~~l~s 484 (1114)
+..+|.+.|.+++|+|+ ...+++++.++.|++||+.+++.+.....+. .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 46789999999999984 4556666667799999999887766443332 26788999999999 55 7999
Q ss_pred ecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee---cCCCCeeEEEEE
Q 001248 485 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY 561 (1114)
Q Consensus 485 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~ 561 (1114)
|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------ 163 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE------ 163 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC------
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc------
Confidence 999999999999999999999999999999998762 4479999999999999999875544433 223333
Q ss_pred ecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCc
Q 001248 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 641 (1114)
Q Consensus 562 s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~ 641 (1114)
|.+++|+|++++|++++.||.
T Consensus 164 -----------------------------------------------------------v~~~~~~~~~~~l~~~~~dg~ 184 (366)
T 3k26_A 164 -----------------------------------------------------------VLSADYDLLGEKIMSCGMDHS 184 (366)
T ss_dssp -----------------------------------------------------------EEEEEECTTSSEEEEEETTSC
T ss_pred -----------------------------------------------------------eeEEEECCCCCEEEEecCCCC
Confidence 334444444444444444444
Q ss_pred EEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCccccccc
Q 001248 642 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 721 (1114)
Q Consensus 642 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 721 (1114)
|++||+.++ +....+.... .+.+.+
T Consensus 185 i~i~d~~~~-~~~~~~~~~~------------~~~~~~------------------------------------------ 209 (366)
T 3k26_A 185 LKLWRINSK-RMMNAIKESY------------DYNPNK------------------------------------------ 209 (366)
T ss_dssp EEEEESCSH-HHHHHHHHHH------------TCCGGG------------------------------------------
T ss_pred EEEEECCCC-ccccccceeE------------EecCCC------------------------------------------
Confidence 555544433 1111111000 000000
Q ss_pred CCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccC
Q 001248 722 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ 801 (1114)
Q Consensus 722 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~ 801 (1114)
..+...........+.
T Consensus 210 ------------------------------------------~~~~~~~~~~~~~~~~---------------------- 225 (366)
T 3k26_A 210 ------------------------------------------TNRPFISQKIHFPDFS---------------------- 225 (366)
T ss_dssp ------------------------------------------CSSCCCCEEECCCSEE----------------------
T ss_pred ------------------------------------------CcccccceeeccCccc----------------------
Confidence 0000000000000000
Q ss_pred CCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCcc--------------ccccCCCCCCeEEEE
Q 001248 802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--------------MATFMPPPPAATFLA 866 (1114)
Q Consensus 802 ~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~--------------~~~~~~~~~~i~~l~ 866 (1114)
.. ..|...|.+++|+ ++++++++ |+.|++||+.++.. +..+..|...|.+++
T Consensus 226 ---------~~--~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (366)
T 3k26_A 226 ---------TR--DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292 (366)
T ss_dssp ---------EC--SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC
T ss_pred ---------cc--cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE
Confidence 00 0155566666665 45666665 66666666655433 455677888999999
Q ss_pred EecCC--CcEEEEEeCCCcEEEEEcccce----EEEeeccc--ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 867 FHPQD--NNIIAIGMDDSSIQIYNVRVDE----VKSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 867 ~sp~d--~~~la~g~~dg~v~iwd~~~~~----~~~~l~~h--~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
|+| + +++|++|+.||.|++||+.+++ ....+.+| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 293 ~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 293 FSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999 7 9999999999999999999875 44577877 79999999999999999999999999999853
No 64
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=320.72 Aligned_cols=356 Identities=14% Similarity=0.158 Sum_probs=247.2
Q ss_pred CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCCeEEEEeCCCeEEEEEccCCceeeee
Q 001248 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQH 458 (1114)
Q Consensus 380 dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~ 458 (1114)
++.+++|+++.++... ++.+|.+.|.+++|+| ++++||+|+.||.|++||+.+++.....
T Consensus 22 ~~~~~v~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 82 (408)
T 4a11_B 22 ESTRRVLGLELNKDRD-------------------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY 82 (408)
T ss_dssp HHHHHHHTEEECTTEE-------------------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE
T ss_pred cCcceeeccccCccee-------------------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE
Confidence 4557777776665543 4788999999999999 9999999999999999999987655422
Q ss_pred Ee----------eccccCCeeEEEecC-CCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCC-CceEE
Q 001248 459 LE----------IDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFI 526 (1114)
Q Consensus 459 ~~----------l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l 526 (1114)
.. ..+|...|.+++|+| ++. ++++++.|+.|++||+.+++.+..+. +...+.++++.+.. ++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 159 (408)
T 4a11_B 83 TCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLV 159 (408)
T ss_dssp EECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEE
T ss_pred eccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEE
Confidence 11 135999999999999 555 79999999999999999999888887 77889999887643 45699
Q ss_pred EEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCc
Q 001248 527 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 606 (1114)
Q Consensus 527 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 606 (1114)
++++.|+.|++||+++......+..+...|.+++|+|++. ..+++++.||.|++||++++
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~ll~~~~~dg~i~i~d~~~~ 219 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--------------------YILATASADSRVKLWDVRRA 219 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT--------------------TEEEEEETTSCEEEEETTCS
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC--------------------cEEEEEcCCCcEEEEECCCC
Confidence 9999999999999999888888877777777777777665 14889999999999999876
Q ss_pred c-eEEEecc-------------CCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCC
Q 001248 607 Q-LLTSIDA-------------DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1114)
Q Consensus 607 ~-~~~~~~~-------------~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1114)
. .+..+.. ..+...|.+++|+|++++|++++.||.|++||+.++.. ...+..+....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~-------- 290 (408)
T 4a11_B 220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCNN-------- 290 (408)
T ss_dssp SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCCC--------
T ss_pred CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc-ceecccccccc--------
Confidence 5 4444421 23445789999999999999999999999999987732 11110000000
Q ss_pred CCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccccc
Q 001248 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1114)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1114)
.
T Consensus 291 -----------------------------------------------------------------------------~-- 291 (408)
T 4a11_B 291 -----------------------------------------------------------------------------S-- 291 (408)
T ss_dssp -----------------------------------------------------------------------------C--
T ss_pred -----------------------------------------------------------------------------c--
Confidence 0
Q ss_pred ceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 753 ~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
.............+.+
T Consensus 292 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 307 (408)
T 4a11_B 292 ----------------------------------------------------------------KKGLKFTVSCGCSSEF 307 (408)
T ss_dssp ----------------------------------------------------------------SSCCCCEECCSSSSCE
T ss_pred ----------------------------------------------------------------cccceeEEecCCCceE
Confidence 0000011111223445
Q ss_pred EEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcC
Q 001248 833 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH 912 (1114)
Q Consensus 833 l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 912 (1114)
++++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+
T Consensus 308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~ 383 (408)
T 4a11_B 308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNP 383 (408)
T ss_dssp EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC---------------------
T ss_pred EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccccc
Confidence 5555599999999999999999999999999999999 8999999999999999999998877655543322 22333
Q ss_pred -CCCEEEEEeCCCcEEEEeCCC
Q 001248 913 -ALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 913 -d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
+...+.+.+.|+.+++|+...
T Consensus 384 ~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 384 AFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------
T ss_pred ccceeecccCccCceeecCCcc
Confidence 334566778899999998754
No 65
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7e-33 Score=312.75 Aligned_cols=294 Identities=15% Similarity=0.217 Sum_probs=224.4
Q ss_pred cccCCCCCeeEEEEcCCCCeEE-EEeC---CCeEEEEEccCCceeeeeEeeccccCCeeEEEecCC---CCeeEEEEecC
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFG-VAYS---RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCGD 487 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~la-s~~~---dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~~~ 487 (1114)
++.+|...|.+++|+|++..++ +|+. |+.|+|||+.+++.... ...+|...|.+++|+|+ +. ++++|+.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 5678999999999999996555 5555 89999999998875432 23379999999999999 56 7999999
Q ss_pred CCCEEEEeCCCCc-ceeEeeccccCEEEEeecc----CCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEe
Q 001248 488 DKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHH----KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 562 (1114)
Q Consensus 488 d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 562 (1114)
|+.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.|+.|++||+++...
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~----------------- 151 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD----------------- 151 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-----------------
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-----------------
Confidence 9999999999988 8889999999999997642 34555666666666666666554221
Q ss_pred cCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC--CCCcCeEE----EcCCCCEEEEE
Q 001248 563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIR----FNKDGCLLAVS 636 (1114)
Q Consensus 563 ~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~----~s~d~~~l~~~ 636 (1114)
.+..+..+.. ...+.+++ |+|++++++++
T Consensus 152 ---------------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 186 (357)
T 3i2n_A 152 ---------------------------------------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG 186 (357)
T ss_dssp ---------------------------------------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE
T ss_pred ---------------------------------------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEE
Confidence 2333322211 22456666 78899999999
Q ss_pred eCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcc
Q 001248 637 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP 716 (1114)
Q Consensus 637 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1114)
+.||.|++||+.++.. ...
T Consensus 187 ~~d~~i~i~d~~~~~~-~~~------------------------------------------------------------ 205 (357)
T 3i2n_A 187 YDNGDIKLFDLRNMAL-RWE------------------------------------------------------------ 205 (357)
T ss_dssp ETTSEEEEEETTTTEE-EEE------------------------------------------------------------
T ss_pred ccCCeEEEEECccCce-eee------------------------------------------------------------
Confidence 9999999999876521 000
Q ss_pred cccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCcccccc
Q 001248 717 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVA 796 (1114)
Q Consensus 717 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 796 (1114)
.
T Consensus 206 -------------------------------~------------------------------------------------ 206 (357)
T 3i2n_A 206 -------------------------------T------------------------------------------------ 206 (357)
T ss_dssp -------------------------------E------------------------------------------------
T ss_pred -------------------------------c------------------------------------------------
Confidence 0
Q ss_pred ccccCCCCCccccccCCCCCCCCCccEEEEee---CCCEEEEEe-CCeEEEEEcCCCccccccC-----CCCCCeEEEEE
Q 001248 797 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFKTMATFM-----PPPPAATFLAF 867 (1114)
Q Consensus 797 ~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~---d~~~l~~~~-dg~i~iwd~~~~~~~~~~~-----~~~~~i~~l~~ 867 (1114)
.|...|.+++|+| ++.+|++++ ||.|++||+.+++....+. +|...|++++|
T Consensus 207 -------------------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~ 267 (357)
T 3i2n_A 207 -------------------NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH 267 (357)
T ss_dssp -------------------ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE
T ss_pred -------------------CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE
Confidence 0344566666666 677777777 7778888877766665554 89999999999
Q ss_pred ecCCCc-EEEEEeCCCcEEEEEcccc-------------------eEEEeecccccCeeEEEEcCCCCEEE-EEeCCCcE
Q 001248 868 HPQDNN-IIAIGMDDSSIQIYNVRVD-------------------EVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQL 926 (1114)
Q Consensus 868 sp~d~~-~la~g~~dg~v~iwd~~~~-------------------~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~D~~v 926 (1114)
+| ++. +|++|+.||.|++||+.++ +.+..+.+|...|++++|+|++++|+ +++.|+.|
T Consensus 268 ~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 268 LP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp ET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred CC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 99 777 8999999999999999853 46778899999999999999999998 89999999
Q ss_pred EEEeCCCC
Q 001248 927 CVWSSDGW 934 (1114)
Q Consensus 927 ~iwd~~~~ 934 (1114)
++||+.+.
T Consensus 347 ~iw~~~~~ 354 (357)
T 3i2n_A 347 RVLIVTKL 354 (357)
T ss_dssp EEEEECC-
T ss_pred EEEECCCc
Confidence 99999874
No 66
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.9e-33 Score=316.62 Aligned_cols=300 Identities=15% Similarity=0.200 Sum_probs=241.5
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc------ceeEeeccccCEEEEeeccC--CCc---eEE
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA------KQYIFEGHEAPVYSVCPHHK--ENI---QFI 526 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~~~--~~~---~~l 526 (1114)
...+.+|.+.|++++|+| + +|++|+.|++|++||+.+++ .+..+.+|...|.+++|+++ .++ .+|
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--C--eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 346789999999999998 5 79999999999999999988 78899999999999998754 226 799
Q ss_pred EEEecCCeEEEEEcCCCCC-----eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEec----CCCCE-EEEEeCCC
Q 001248 527 FSTALDGKIKAWLYDNLGS-----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD----TTKNR-FLAAGDDF 596 (1114)
Q Consensus 527 ~s~~~d~~i~~wd~~~~~~-----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~----~~~~~-l~~~~~dg 596 (1114)
++++.|+.|++||+.+... ...+..+... .....+.+++|+ |++++ |++++.||
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg 148 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD----------------MKKHSFWALKWGASNDRLLSHRLVATDVKG 148 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT----------------GGGSCEEEEEEECCC----CEEEEEEETTS
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccc----------------cCCCcEEEEEEeeccCCCCceEEEEEeCCC
Confidence 9999999999999988765 4444444200 001244445555 55568 99999999
Q ss_pred eEEEEECCC------cceEE-----Eecc-----CCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccc
Q 001248 597 SIKFWDMDS------VQLLT-----SIDA-----DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1114)
Q Consensus 597 ~i~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1114)
.|++||+.+ ++.+. .+.. ..+...+.+++|+|++ ++++++.||.|++||+.++ +.+..+..
T Consensus 149 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~- 225 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFES- 225 (397)
T ss_dssp CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEEC-
T ss_pred cEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEec-
Confidence 999999988 66665 6643 3345679999999999 9999999999999998765 22111100
Q ss_pred ccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccc
Q 001248 661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 740 (1114)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 740 (1114)
T Consensus 226 -------------------------------------------------------------------------------- 225 (397)
T 1sq9_A 226 -------------------------------------------------------------------------------- 225 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCC---
Q 001248 741 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP--- 817 (1114)
Q Consensus 741 ~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~--- 817 (1114)
. .+|
T Consensus 226 -----------------------------------------------------------------------~--~~h~~~ 232 (397)
T 1sq9_A 226 -----------------------------------------------------------------------Q--HSMINN 232 (397)
T ss_dssp -----------------------------------------------------------------------C--C---CC
T ss_pred -----------------------------------------------------------------------c--cccccc
Confidence 0 003
Q ss_pred CCCccEEEEeeCCCEEEEEe-C---CeEEEEEcCCCccccccCC-------------CCCCeEEEEEecCCCcEEEEEeC
Q 001248 818 EEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMP-------------PPPAATFLAFHPQDNNIIAIGMD 880 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~-d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~~l~~sp~d~~~la~g~~ 880 (1114)
...|.+++|+|++++|++++ | +.|++||+.+++.+..+.. |...|.+++|+| ++++|++|+.
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 311 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGW 311 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEET
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeC
Confidence 55677788888888888887 7 7888888888888888877 899999999999 8999999999
Q ss_pred CCcEEEEEcccceEEEeec------cc---------------ccCeeEEEEcCCC----------CEEEEEeCCCcEEEE
Q 001248 881 DSSIQIYNVRVDEVKSKLK------GH---------------SKRITGLAFSHAL----------NVLVSSGADSQLCVW 929 (1114)
Q Consensus 881 dg~v~iwd~~~~~~~~~l~------~h---------------~~~V~~l~~s~d~----------~~l~s~s~D~~v~iw 929 (1114)
||.|++||+.+++.+..+. +| ...|++++|+|++ ++|++++.|+.|++|
T Consensus 312 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw 391 (397)
T 1sq9_A 312 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 391 (397)
T ss_dssp TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEE
Confidence 9999999999999999998 88 9999999999998 799999999999999
Q ss_pred eCCCC
Q 001248 930 SSDGW 934 (1114)
Q Consensus 930 d~~~~ 934 (1114)
++.++
T Consensus 392 ~~~~g 396 (397)
T 1sq9_A 392 REAGG 396 (397)
T ss_dssp EEEC-
T ss_pred EcCCC
Confidence 99874
No 67
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.8e-33 Score=322.47 Aligned_cols=240 Identities=15% Similarity=0.236 Sum_probs=185.7
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CC
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG 432 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 432 (1114)
...|...|+||+|+|....+||+|+.||+|+|||+.+++..... .+.+|.+.|++|+|+| ++
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~ 177 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNT 177 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCT
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCC
Confidence 34589999999999965547999999999999999887654311 3578999999999998 78
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
.+|++|+.||+|+|||++++. .........+...+.+++|+|+++ +|++|+.||+|++||++ ++.+..+.+|...|
T Consensus 178 ~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v 253 (435)
T 4e54_B 178 NQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKV 253 (435)
T ss_dssp TEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCE
T ss_pred CEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceE
Confidence 999999999999999998754 332223334555788999999999 89999999999999975 56788899999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee---cCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
.+++|++..+ .++++++.|+.|++||+++......+ ..|...|.+++ |+|++++|
T Consensus 254 ~~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~---------------------~spdg~~l 311 (435)
T 4e54_B 254 THVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC---------------------FSPDGARL 311 (435)
T ss_dssp EEEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECC---------------------BCTTSSEE
T ss_pred EeeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeecccccccee---------------------ECCCCCee
Confidence 9999977543 58999999999999999876544322 33444555555 45555589
Q ss_pred EEEeCCCeEEEEECCCcceEEEeccCCCC----CCcCeEEEcCCCCEEEEE
Q 001248 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGL----PASPRIRFNKDGCLLAVS 636 (1114)
Q Consensus 590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~s~d~~~l~~~ 636 (1114)
++++.||.|++||+.++.....+..+... ..+....|+|++.+++++
T Consensus 312 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (435)
T 4e54_B 312 LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVG 362 (435)
T ss_dssp EEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEE
T ss_pred EEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEE
Confidence 99999999999999998887777654321 123345566666555554
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-32 Score=304.96 Aligned_cols=306 Identities=11% Similarity=0.117 Sum_probs=242.4
Q ss_pred cceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE
Q 001248 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1114)
Q Consensus 349 ~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1114)
.+.....+|.+.|++++|+|+|++ |++|+.||.|+|||+.+++.+. .+.+|...|.+++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~ 82 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDV 82 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCE-EEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCE-EEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEE
Confidence 344556679999999999999995 9999999999999999988766 37789999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC-----CCEEEEeCCCCc---
Q 001248 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-----KTIKVWDATNGA--- 500 (1114)
Q Consensus 429 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~--- 500 (1114)
+|++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 83 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 83 DCFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccce
Confidence 9999999999999999999999988766 344 888999999999999 78888888 999999998764
Q ss_pred --------ceeEeecccc--CEEEEeeccCCCceEEEEEecCCeEEEEEcCC-CCCeeeecCCCCeeEEEEEecCCCeEE
Q 001248 501 --------KQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 501 --------~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
.+..+..|.. .+.+++|++ ++.++++++.||.|++||+++ ......+..+...|.+++|+|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---- 230 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL---- 230 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS----
T ss_pred eecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC----
Confidence 3445556666 899999865 557999999999999999987 45555556566666666555555
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
++|++++.|+.|++||+.+++.+..+... ..+.+++|+|+++++++++.++...+|....
T Consensus 231 -----------------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 290 (369)
T 3zwl_B 231 -----------------TYFITSSRDTNSFLVDVSTLQVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSA 290 (369)
T ss_dssp -----------------SEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECCC---------
T ss_pred -----------------CEEEEecCCceEEEEECCCCceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEec
Confidence 47999999999999999999999888733 4689999999999999999998665554322
Q ss_pred CccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEE
Q 001248 650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 729 (1114)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 729 (1114)
.. ....+++|
T Consensus 291 ~~----------------------------------------------------------------------~~~~i~~~ 300 (369)
T 3zwl_B 291 NE----------------------------------------------------------------------GKFEARFY 300 (369)
T ss_dssp --------------------------------------------------------------------------CEEEEE
T ss_pred CC----------------------------------------------------------------------CcceeEEE
Confidence 10 01245566
Q ss_pred EeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeeccc
Q 001248 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT 783 (1114)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~ 783 (1114)
+.......... .+|...|.+++|+|++++|++++.||.|++|++...
T Consensus 301 d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 301 HKIFEEEIGRV-------QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ETTTCCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ecCCCcchhhe-------ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 65543222111 237889999999999999999999999999998754
No 69
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.2e-33 Score=319.56 Aligned_cols=362 Identities=12% Similarity=0.156 Sum_probs=248.1
Q ss_pred CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCC
Q 001248 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK 672 (1114)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1114)
.++.+++|++..++....+..| ...|.+++|+| ++++|++++.||.|++||+.++.. ...+.....
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~---------- 87 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIH--GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSR-QSYYTCKAV---------- 87 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCC--SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSS-SSCEEECEE----------
T ss_pred ccCcceeeccccCcceeeeecc--CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcc-cceEecccc----------
Confidence 3456778888887777777765 45899999999 999999999999999999987632 211110000
Q ss_pred CCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccccc
Q 001248 673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752 (1114)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 752 (1114)
.... .....+|..
T Consensus 88 --------------------------------------------------------~~~~-----------~~~~~~~~~ 100 (408)
T 4a11_B 88 --------------------------------------------------------CSIG-----------RDHPDVHRY 100 (408)
T ss_dssp --------------------------------------------------------EEEC-----------TTCTTCCSS
T ss_pred --------------------------------------------------------cccc-----------ccccccCCC
Confidence 0000 000023788
Q ss_pred ceEEEEEcc-CcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC--
Q 001248 753 KISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN-- 829 (1114)
Q Consensus 753 ~i~~l~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d-- 829 (1114)
.|.+++|+| ++..+++++.||.|++|++... ...... .+...+.++++++.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------------~~~~~~----~~~~~~~~~~~~~~~~ 154 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----------------------QTADVF----NFEETVYSHHMSPVST 154 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTT----------------------EEEEEE----ECSSCEEEEEECSSCS
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----------------------ccceec----cCCCceeeeEeecCCC
Confidence 999999999 7788999999999999987532 211111 15667889999884
Q ss_pred -CCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEEcccce-EEEee-------
Q 001248 830 -DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDE-VKSKL------- 898 (1114)
Q Consensus 830 -~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~la~g~~dg~v~iwd~~~~~-~~~~l------- 898 (1114)
+.++++++ ++.|++||+.+++.+..+..|...|++++|+| ++. +|++|+.||.|++||+.++. .+..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 233 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK 233 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence 44899888 89999999999999999999999999999999 665 79999999999999998764 33333
Q ss_pred --------cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 899 --------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 899 --------~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
.+|...|++++|+|++++|++++.|+.|++||+.+++.............. ......+.....+.+++++
T Consensus 234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 311 (408)
T 4a11_B 234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVP 311 (408)
T ss_dssp CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEE
T ss_pred ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEe
Confidence 579999999999999999999999999999999986643221111111111 1122333344456666668
Q ss_pred eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccc
Q 001248 971 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1050 (1114)
Q Consensus 971 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1050 (1114)
.++.|++||+.+++.+..+. +|...|++++|+|++++|++++.||.|++||+.+++.+...... ..
T Consensus 312 ~~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------~~- 377 (408)
T 4a11_B 312 YGSTIAVYTVYSGEQITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET-----------TT- 377 (408)
T ss_dssp ETTEEEEEETTTCCEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------
T ss_pred cCCEEEEEECcCCcceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce-----------Ee-
Confidence 99999999999999988876 88999999999999999999999999999999999887654311 01
Q ss_pred eEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1051 LVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1051 ~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
...+.+.+.....+.+.|+.+++|+.+.
T Consensus 378 -~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 378 -KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp -----------------------------
T ss_pred -ccccccccceeecccCccCceeecCCcc
Confidence 1223333455677888899999998653
No 70
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.2e-32 Score=337.12 Aligned_cols=211 Identities=18% Similarity=0.283 Sum_probs=175.3
Q ss_pred cccCCCCCeeEEEEcCCC-CeEEEEeCCCeEEEEEccCCcee--eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE
Q 001248 415 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg-~~las~~~dg~i~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i 491 (1114)
.+.+|.+.|++++|+|++ ++|++|+.|++|+|||+.++... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 478999999999999864 79999999999999999864321 12336889999999999999999 79999999999
Q ss_pred EEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee---cCCCCeeEEEEEecCCCeE
Q 001248 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~g~~~ 568 (1114)
++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||.......... ..|...|.+++|+|++.
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-- 530 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL-- 530 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS--
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC--
Confidence 9999999999999999999999999865 4579999999999999997643221111 22334455555544431
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
...+++++.|+.|++||+.+++....+..|. ..|.+++|+|++++|++++.||.|++||+.
T Consensus 531 -----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 531 -----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp -----------------SCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred -----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 1469999999999999999999998887664 479999999999999999999999999987
Q ss_pred CC
Q 001248 649 DG 650 (1114)
Q Consensus 649 ~~ 650 (1114)
++
T Consensus 592 ~~ 593 (694)
T 3dm0_A 592 EG 593 (694)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 71
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1e-32 Score=319.73 Aligned_cols=294 Identities=15% Similarity=0.192 Sum_probs=222.4
Q ss_pred ceeEEEecC-CCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCCccc
Q 001248 576 SLGVVQFDT-TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 576 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
.|.+++|+| ++++|++|+.||.|+|||+.+++....+...+|...|.+++|+| ++++|++++.||+|++||+.++.
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~-- 198 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI-- 198 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE--
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc--
Confidence 455555665 34579999999999999999887766666666677899999998 78999999999999999976431
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
...+..
T Consensus 199 ~~~~~~-------------------------------------------------------------------------- 204 (435)
T 4e54_B 199 LRVFAS-------------------------------------------------------------------------- 204 (435)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred eeEEec--------------------------------------------------------------------------
Confidence 000000
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
.
T Consensus 205 ---------------------------~---------------------------------------------------- 205 (435)
T 4e54_B 205 ---------------------------S---------------------------------------------------- 205 (435)
T ss_dssp ---------------------------C----------------------------------------------------
T ss_pred ---------------------------c----------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
..+...+.+++|++++++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|++..+|++|+.|+.|+|||+.++
T Consensus 206 -~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~ 283 (435)
T 4e54_B 206 -DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 283 (435)
T ss_dssp -SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTC
T ss_pred -CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccc
Confidence 00334567889999999999998 8999999986 46677889999999999999955568999999999999999886
Q ss_pred eEEE---eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 893 EVKS---KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 893 ~~~~---~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
+... ...+|...|++++|+|||++|++++.|++|+|||+.+++.......... . ......+....|+|++.++++
T Consensus 284 ~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 284 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH-R-HFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp CSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC-C-CCSSSCCCBCEECSSSSCEEE
T ss_pred cccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc-c-ccccceeEEEEEcCCCCEEEE
Confidence 5443 3467999999999999999999999999999999998654332111110 0 000112344566676666665
Q ss_pred E-------------eCCeEEEEEcCCCceeeeeecCCCCcCeeEE-EECCCCCEEEEEEcCCeEEEEEcCCCeee
Q 001248 970 V-------------HETQLAIFETTKLECVKQWVPRESSAPITHA-TFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 970 ~-------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l-~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
+ .++.|++||..+++.+..+. .+|...|.++ +|+|||++|++|+ |+.|+||++.+++..
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 3 23579999999999988765 3678888887 6999999999876 889999999988754
No 72
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-32 Score=313.23 Aligned_cols=308 Identities=12% Similarity=0.163 Sum_probs=239.9
Q ss_pred EEECCCcceEEEeccCCCCCCcCeEEEcCCC-CEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccch
Q 001248 600 FWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 678 (1114)
Q Consensus 600 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1114)
+|+....+....+..| ...|.+++|+|++ ++|++++.||.|++||+.++. ....+.
T Consensus 57 ~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-------------------- 113 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPF--DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-KTSFIQ-------------------- 113 (383)
T ss_dssp HHHHTTCEEEEEECCC--SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-CEEEEC--------------------
T ss_pred cccccccceEEeccCC--CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-cceeee--------------------
Confidence 3444555666667655 4579999999999 999999999999999998662 111110
Q ss_pred hhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEE
Q 001248 679 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 758 (1114)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 758 (1114)
..+|...|.+++
T Consensus 114 --------------------------------------------------------------------~~~h~~~v~~~~ 125 (383)
T 3ei3_B 114 --------------------------------------------------------------------GMGPGDAITGMK 125 (383)
T ss_dssp --------------------------------------------------------------------CCSTTCBEEEEE
T ss_pred --------------------------------------------------------------------cCCcCCceeEEE
Confidence 012778999999
Q ss_pred Ecc-CcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe
Q 001248 759 FTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837 (1114)
Q Consensus 759 ~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~ 837 (1114)
|+| ++..+++++.|+.|++|++.... .........+...|.+++|+|++++|++++
T Consensus 126 ~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 126 FNQFNTNQLFVSSIRGATTLRDFSGSV-----------------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp EETTEEEEEEEEETTTEEEEEETTSCE-----------------------EEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred eCCCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence 999 78999999999999999975211 111111122568899999999999999999
Q ss_pred -CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCc-EEEEEeCCCcEEEEEccc----ceEEEeecccccCeeEEEEc
Q 001248 838 -GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRV----DEVKSKLKGHSKRITGLAFS 911 (1114)
Q Consensus 838 -dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~la~g~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~l~~s 911 (1114)
|+.|++||+ +++.+..+.+|...|.+++|+| ++. +|++|+.||.|++||+.+ +.++..+ +|...|++++|+
T Consensus 183 ~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s 259 (383)
T 3ei3_B 183 STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN 259 (383)
T ss_dssp TTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence 899999999 5778888999999999999999 776 999999999999999998 6666666 699999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEeCCCCcccccccccc--CCCCCC-------CCCCceEEEEccCCcEEEEEeCCeEEEEEcC
Q 001248 912 H-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI--PTGRTP-------TAQSDTRVQFHQDQIHFLVVHETQLAIFETT 981 (1114)
Q Consensus 912 ~-d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~ 981 (1114)
| ++++|++++.|++|++||+.+++......... ...+.. ....+..++|+|||++ ..+.|+.|++||+.
T Consensus 260 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 260 PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDAN 338 (383)
T ss_dssp TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETT
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecC
Confidence 9 99999999999999999999866532211100 001110 0022334556666666 22579999999999
Q ss_pred CCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
+++.+..+....|...+..++|+||+++|++++ ||.|+|||+++
T Consensus 339 ~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 339 SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999887655778889999999999999997 99999999875
No 73
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.7e-32 Score=297.09 Aligned_cols=255 Identities=16% Similarity=0.205 Sum_probs=207.0
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCc--ceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd 431 (1114)
..+|.+.|++++|+|+|++ ||+|+.|++|+|||+.++ +.+. .+.+|.+.|.+++|+|+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~ 64 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP 64 (297)
T ss_dssp CCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCG
T ss_pred ccCCcCceEEEEECCCCCE-EEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCC
Confidence 3459999999999999995 999999999999999753 2222 47899999999999874
Q ss_pred --CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCC--CCeeEEEEecCCCCEEEEeCCCCcc--eeEe
Q 001248 432 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAK--QYIF 505 (1114)
Q Consensus 432 --g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~ 505 (1114)
|++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++.. ...+
T Consensus 65 ~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~ 141 (297)
T 2pm7_B 65 KFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIII 141 (297)
T ss_dssp GGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEE
T ss_pred CcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeee
Confidence 899999999999999999987421 22357789999999999998 67 799999999999999987642 4677
Q ss_pred eccccCEEEEeeccCC-----------CceEEEEEecCCeEEEEEcCCCC----CeeeecCCCCeeEEEEEecCCCeEEe
Q 001248 506 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
.+|...|.+++|++.. ++.+|++|+.|++|++||+++.. ....+..|...|.+++|+|++.
T Consensus 142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~---- 217 (297)
T 2pm7_B 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL---- 217 (297)
T ss_dssp ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC----
Confidence 8999999999998752 35699999999999999998765 2345666777777777777641
Q ss_pred eecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc---eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
.+++|++++.|++|++||+.++. ....+....+...|.+++|+|+|++|++++.||.|++|+.
T Consensus 218 --------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 218 --------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp --------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred --------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 02479999999999999987643 1223322344567899999999999999999999999997
Q ss_pred cC
Q 001248 648 SD 649 (1114)
Q Consensus 648 ~~ 649 (1114)
..
T Consensus 284 ~~ 285 (297)
T 2pm7_B 284 NL 285 (297)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 74
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=318.03 Aligned_cols=321 Identities=12% Similarity=0.105 Sum_probs=243.6
Q ss_pred cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC
Q 001248 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1114)
Q Consensus 463 ~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 542 (1114)
.-...|.+++|+|||+ ++||++.|++|+ |...++ .+.+|...|.+++|+|. | .++.+.+|+.
T Consensus 13 ~~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPd--g-------~~~~~~~~~~-- 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPL--E-------FENKLDFELA-- 74 (588)
T ss_dssp CCSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECC--C-------CCCTTTTSCC--
T ss_pred HhhccEEEEEECCCCC--EEEEEcCCceee--cccccc---eecCCCccEEEEEECCC--C-------CcceEEEEeC--
Confidence 3457899999999999 899999999999 755554 44799999999998664 3 4555555543
Q ss_pred CCCeeeec-CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC---C
Q 001248 543 LGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG---L 618 (1114)
Q Consensus 543 ~~~~~~~~-~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~ 618 (1114)
+....+. .+...|.+++|+|+|. +|++++.||.|++||... ++..+. +.. .
T Consensus 75 -~~~~~~~~~~~~~V~~vawSPdG~---------------------~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 75 -QQNGLLNSQPVCYPRVCKPSPIDD---------------------WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS 129 (588)
T ss_dssp -CSSCSSTTSCSCCEEEEEECSSSS---------------------CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred -CCceEeecCCCCcEEEEEECCCCC---------------------EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence 3222222 2345566666665554 799999999999999544 555555 331 1
Q ss_pred CCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc------ceeeccccccccccCCCCCCCCccchhhhhhhhccccccc
Q 001248 619 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR------LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 692 (1114)
Q Consensus 619 ~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1114)
..+.+++|||||++|++|+.||+|++||+.++.. .+..+..+
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~-------------------------------- 177 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS-------------------------------- 177 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS--------------------------------
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecc--------------------------------
Confidence 2589999999999999999999999999876510 00000000
Q ss_pred cccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccC
Q 001248 693 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 772 (1114)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 772 (1114)
T Consensus 178 -------------------------------------------------------------------------------- 177 (588)
T 2j04_A 178 -------------------------------------------------------------------------------- 177 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccc
Q 001248 773 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 852 (1114)
Q Consensus 773 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~ 852 (1114)
. .+|...|.+++|+||| +++++.|++|++||+.++...
T Consensus 178 ---------------------------------------~--~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~ 215 (588)
T 2j04_A 178 ---------------------------------------D--AGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQ 215 (588)
T ss_dssp ---------------------------------------C--TTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSC
T ss_pred ---------------------------------------c--ccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccc
Confidence 0 1277789999999999 444444999999999877642
Q ss_pred ---ccc-CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEE--cCCCCEEEEEeCCCcE
Q 001248 853 ---ATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF--SHALNVLVSSGADSQL 926 (1114)
Q Consensus 853 ---~~~-~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--s~d~~~l~s~s~D~~v 926 (1114)
+++ .+|...|.+++|+ ++.||+++ +++|++||+.+++......+|.+.|++++| +||+..|+++++||+
T Consensus 216 ~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~- 290 (588)
T 2j04_A 216 PVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY- 290 (588)
T ss_dssp CCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-
T ss_pred cceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-
Confidence 456 4788899999999 47888887 699999999988874444489999999999 999999999999999
Q ss_pred EEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCC
Q 001248 927 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD 1006 (1114)
Q Consensus 927 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d 1006 (1114)
++|..+. ++|+||+..++.. |+++++|+..... ...+ .+...|.+++||||
T Consensus 291 klw~~d~------------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~---~~~~~I~~va~SPd 341 (588)
T 2j04_A 291 KVLLEDE------------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNY---ETTLVIHGISLSPD 341 (588)
T ss_dssp EEEESSS------------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSS---CCEEEEEEEEECTT
T ss_pred EEEeecc------------------------EEECCCceEEEEc-CCEEEEEECCCCc-eeee---ccceEEEEEEECCC
Confidence 9998862 5599999888775 9999999986554 3332 23677999999999
Q ss_pred CCEEEEEE
Q 001248 1007 SQLVYACF 1014 (1114)
Q Consensus 1007 g~~l~s~s 1014 (1114)
|+.+|+++
T Consensus 342 G~~lA~~~ 349 (588)
T 2j04_A 342 GYSIAIVY 349 (588)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999886
No 75
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3e-32 Score=310.67 Aligned_cols=251 Identities=14% Similarity=0.211 Sum_probs=194.4
Q ss_pred EeccCCCCceEEEEcCCC-CeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-
Q 001248 353 RTLNQGSSPMSMDFHPVQ-QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 430 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg-~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp- 430 (1114)
...+|...|++++|+|+| + +|++|+.||.|+|||+.+++..... ...+|...|.+++|+|
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~~~~ 129 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKFNQF 129 (383)
T ss_dssp EECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEEETT
T ss_pred eccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEeCCC
Confidence 334599999999999999 6 6999999999999999988765421 1347999999999999
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecccc
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~ 510 (1114)
++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ +|++|+.|+.|++||+ +++.+..+.+|..
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~ 205 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEKLHKA 205 (383)
T ss_dssp EEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEECSSS
T ss_pred CCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEeccCCC
Confidence 789999999999999999996 44443334445668899999999999 7999999999999998 6888999999999
Q ss_pred CEEEEeeccCCCce-EEEEEecCCeEEEEEcCCCC----CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecC-
Q 001248 511 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT- 584 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~- 584 (1114)
.|.+++|++.. . ++++++.|+.|++||+++.. ....+ .+.. .+..++|+|
T Consensus 206 ~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~---------------------~v~~~~~s~~ 261 (383)
T 3ei3_B 206 KVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK---------------------PVNAAYFNPT 261 (383)
T ss_dssp CEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS---------------------CEEEEEECTT
T ss_pred cEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC---------------------ceEEEEEcCC
Confidence 99999987644 5 89999999999999998733 22222 2333 445555555
Q ss_pred CCCEEEEEeCCCeEEEEECCCcceEEEeccCC-----CCCCcCeEEEcCCCCEEE---------EEeCCCcEEEEEccCC
Q 001248 585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLA---------VSTNDNGIKILATSDG 650 (1114)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~d~~~l~---------~~~~dg~i~iwd~~~~ 650 (1114)
++.+|++++.|+.|++||+.+++....+..+. +...+. +.|+|++..++ +++.||.|++||+.++
T Consensus 262 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 262 DSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSG 340 (383)
T ss_dssp TSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTC
T ss_pred CCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEecCCcccccCCCCeEEEEecCCC
Confidence 56689999999999999999988776665432 122333 35555555444 3445666666666555
No 76
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.7e-32 Score=307.20 Aligned_cols=323 Identities=13% Similarity=0.158 Sum_probs=239.9
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
+..|.++|.+++|+||+++|++++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 45689999999999999999999999999999999886 122336889999999999999999 799999999999999
Q ss_pred CCCCcceeE--eeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCee----eecCCCCeeEEEEEecCCCeEE
Q 001248 496 ATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----DYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 496 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
+.+++.... +..|...|.+++|++ ++.+|++++.|+.|++||++...... ....+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~--------------- 143 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS--------------- 143 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS---------------
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC---------------
Confidence 998875544 467999999999865 45899999999999999998765321 1122333
Q ss_pred eeecccceeEEEecCCCCEEEEEeCCCeEEEEEC------------------CCcceEEEeccCCCCCCcCeEEEcCCCC
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM------------------DSVQLLTSIDADGGLPASPRIRFNKDGC 631 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 631 (1114)
.+.+++|+|+++++++++.||.|++||+ ..++.+..+..+ ...+.+++|+|+++
T Consensus 144 ------~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 144 ------TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGS 215 (372)
T ss_dssp ------CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSS
T ss_pred ------CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCC
Confidence 4455555555568999999999999995 367777777755 44799999999999
Q ss_pred EEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCcccc
Q 001248 632 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL 711 (1114)
Q Consensus 632 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1114)
+|++++.||.|++||+.++ +.+..+.
T Consensus 216 ~l~~~~~d~~i~i~d~~~~-~~~~~~~----------------------------------------------------- 241 (372)
T 1k8k_C 216 RVAWVSHDSTVCLADADKK-MAVATLA----------------------------------------------------- 241 (372)
T ss_dssp EEEEEETTTEEEEEEGGGT-TEEEEEE-----------------------------------------------------
T ss_pred EEEEEeCCCEEEEEECCCC-ceeEEEc-----------------------------------------------------
Confidence 9999999999999999876 2322221
Q ss_pred CCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCc
Q 001248 712 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA 791 (1114)
Q Consensus 712 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 791 (1114)
.|...|.+++|+|++..++++ .|+.+++|++...
T Consensus 242 -------------------------------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~-------- 275 (372)
T 1k8k_C 242 -------------------------------------SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSA-------- 275 (372)
T ss_dssp -------------------------------------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETT--------
T ss_pred -------------------------------------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCc--------
Confidence 155678899999999877766 8899999987520
Q ss_pred cccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEE---EcCCCccc------ccc-CCCCCC
Q 001248 792 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF---NMMTFKTM------ATF-MPPPPA 861 (1114)
Q Consensus 792 ~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iw---d~~~~~~~------~~~-~~~~~~ 861 (1114)
.+..... +.-... ..-..+....+++| +... ... ..+ .+|...
T Consensus 276 ------------~~~~~~~------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 276 ------------AGKLSFG------GRLDVP--------KQSSQRGLTARERFQNLDKKA-SSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp ------------TTEEEEC------CCCCCC----------------CHHHHHHHCCCCC----------CCCSSSSSSC
T ss_pred ------------CceEEEe------eccCcc--------ccchhhhcchhhhhhhccccc-ccccCccccccccccccCC
Confidence 0111000 000000 00011113345555 4322 222 333 489999
Q ss_pred eEEEEEecCCC---cEEEEEeCCCcEEEEEcccce
Q 001248 862 ATFLAFHPQDN---NIIAIGMDDSSIQIYNVRVDE 893 (1114)
Q Consensus 862 i~~l~~sp~d~---~~la~g~~dg~v~iwd~~~~~ 893 (1114)
|++++|++.++ .+|++|+.||.|++||+.+++
T Consensus 329 v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 329 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 99999775477 999999999999999998764
No 77
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-31 Score=295.07 Aligned_cols=282 Identities=16% Similarity=0.192 Sum_probs=230.4
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+.+|.+.|.+++| |++++|++|+.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 57899999999999 999999999999999999998877555 5778999999999999999 79999999999999
Q ss_pred eCCCC---cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee
Q 001248 495 DATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 495 d~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
++... +.+..+.+|...|.+++| ++.++++++.|+.|++||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d-------------------------------- 130 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK-------------------------------- 130 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--------------------------------
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--------------------------------
Confidence 98754 556777888888888876 224566666666666664
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCCcEEEEEccCC
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.++.+..+..+ ...+.++.|+| ++.++++++.||.|++||....
T Consensus 131 ---------------------------------~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 175 (313)
T 3odt_A 131 ---------------------------------EGSLVYNLQAH--NASVWDAKVVSFSENKFLTASADKTIKLWQNDKV 175 (313)
T ss_dssp ---------------------------------TTEEEEEEECC--SSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE
T ss_pred ---------------------------------CCcEEEecccC--CCceeEEEEccCCCCEEEEEECCCCEEEEecCce
Confidence 22333334333 34678888888 8999999999999999982211
Q ss_pred ccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
...+.
T Consensus 176 ---~~~~~------------------------------------------------------------------------ 180 (313)
T 3odt_A 176 ---IKTFS------------------------------------------------------------------------ 180 (313)
T ss_dssp ---EEEEC------------------------------------------------------------------------
T ss_pred ---EEEEe------------------------------------------------------------------------
Confidence 10000
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
T Consensus 181 -------------------------------------------------------------------------------- 180 (313)
T 3odt_A 181 -------------------------------------------------------------------------------- 180 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 001248 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~ 889 (1114)
..|...+.+++++|++. +++++ ||.|++||+.+++.+..+.+|...|++++|+| ++ .|++++.||.|++||+
T Consensus 181 ----~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 181 ----GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSK 253 (313)
T ss_dssp ----SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECT
T ss_pred ----ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEEC
Confidence 00456678888888888 66666 89999999999999999999999999999999 77 5889999999999999
Q ss_pred ccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001248 890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 936 (1114)
Q Consensus 890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~ 936 (1114)
.+++.+..+..|...|++++|+|+++ +++++.|+.|++|++.+++.
T Consensus 254 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 254 ENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp TTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred CCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 99999999999999999999999998 66799999999999998554
No 78
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.8e-32 Score=307.76 Aligned_cols=255 Identities=14% Similarity=0.191 Sum_probs=203.8
Q ss_pred eeEecc-CCCCceEEEEcCCCCeEEEEEec---CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEE
Q 001248 351 VTRTLN-QGSSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 351 ~~~~~~-h~~~v~~v~~spdg~~ll~tg~~---dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
+...+. |.+.|++++|+|++.+++++|+. ||.|+|||+.+++.... ...+|...|.++
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~ 71 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCG 71 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEE
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEE
Confidence 334444 99999999999999888888887 99999999998876542 133688899999
Q ss_pred EEcCC---CCeEEEEeCCCeEEEEEccCCc-eeeeeEeeccccCCeeEEE------ecCCCCeeEEEEecCCCCEEEEeC
Q 001248 427 IWSPD---GSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIA------FSHPNKQLCVITCGDDKTIKVWDA 496 (1114)
Q Consensus 427 ~~spd---g~~las~~~dg~i~iwd~~~~~-~~~~~~~l~~h~~~V~~v~------~s~d~~~~~l~s~~~d~~i~iwd~ 496 (1114)
+|+|+ |++|++|+.||.|++||+.+++ .+. .+.+|...|.+++ |+|+++ +|++++.|+.|++||+
T Consensus 72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDP 146 (357)
T ss_dssp ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECT
T ss_pred EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeC
Confidence 99998 7999999999999999999887 444 6789999999995 578888 7999999999999999
Q ss_pred CCCc-ceeEeecccc----CEEEEeec--cCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEE
Q 001248 497 TNGA-KQYIFEGHEA----PVYSVCPH--HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 497 ~~~~-~~~~~~~h~~----~v~~~~~~--~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
.+++ .+..+..|.+ .+.+++|. .++++.++++++.|+.|++||+++..... ...+...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~-------------- 211 (357)
T 3i2n_A 147 RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNG-------------- 211 (357)
T ss_dssp TSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSC--------------
T ss_pred CCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCc--------------
Confidence 9987 6788876655 78888842 24566899999999999999998755422 2223334
Q ss_pred eeecccceeEEEecC---CCCEEEEEeCCCeEEEEECCCcceEEEec---cCCCCCCcCeEEEcCCCC-EEEEEeCCCcE
Q 001248 570 QGFRKRSLGVVQFDT---TKNRFLAAGDDFSIKFWDMDSVQLLTSID---ADGGLPASPRIRFNKDGC-LLAVSTNDNGI 642 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i 642 (1114)
+..++|+| +++++++++.||.|++||+.+++.+..+. ...+...|.+++|+|++. ++++++.||.|
T Consensus 212 -------v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 284 (357)
T 3i2n_A 212 -------VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGL 284 (357)
T ss_dssp -------EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred -------eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcE
Confidence 44555555 56689999999999999998876554443 113355799999999998 89999999999
Q ss_pred EEEEccCC
Q 001248 643 KILATSDG 650 (1114)
Q Consensus 643 ~iwd~~~~ 650 (1114)
++||+.++
T Consensus 285 ~iwd~~~~ 292 (357)
T 3i2n_A 285 HLWKYEYP 292 (357)
T ss_dssp EEEEEECC
T ss_pred EEeecCCC
Confidence 99999876
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.9e-32 Score=306.03 Aligned_cols=244 Identities=12% Similarity=0.092 Sum_probs=205.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcc--eeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
|.+.|++++|+|+|++ |++|+.||.|++||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 8899999999999995 9999999999999999886 333 36789999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc---ee-Eeecccc
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QY-IFEGHEA 510 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~-~~~~h~~ 510 (1114)
|++++.||.|++||+.+++... ...+.+|...|.+++|+|+++ ++++++.|+.|++||+..+.. .. ...+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 9999999999999999886443 334578999999999999999 799999999999999998773 23 3367899
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCC------------------CCCeeeecCCCCeeEEEEEecCCCeEEeee
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN------------------LGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------------------~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
.|.+++|++ ++.++++++.|+.|++||++. ......+..+..
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 203 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG------------------ 203 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS------------------
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC------------------
Confidence 999999876 457999999999999999753 222223333333
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
.+..++|+|+++++++++.|+.|++||+.+++.+..+..+. ..+.+++|+|++.+++++ .|+.|++|++.+
T Consensus 204 ---~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 204 ---WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ---CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ---eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 45556666666689999999999999999999999998664 479999999999988887 899999999987
No 80
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.2e-32 Score=309.88 Aligned_cols=295 Identities=13% Similarity=0.164 Sum_probs=216.4
Q ss_pred cCCeeEEEecCCCCeeEEEEecCCC-------CEEEEeCCCCcce----------eEeeccccCEEEEeeccCCCceEEE
Q 001248 465 VGGVNDIAFSHPNKQLCVITCGDDK-------TIKVWDATNGAKQ----------YIFEGHEAPVYSVCPHHKENIQFIF 527 (1114)
Q Consensus 465 ~~~V~~v~~s~d~~~~~l~s~~~d~-------~i~iwd~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~~~l~ 527 (1114)
..+|++++|+||++ +|++||.|. .|++|++..+... ..+.+|...|.++++. + ..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~--~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--K--GIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--T--TEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--C--CEEE
Confidence 35899999999999 789987543 4999998765421 2356677777777642 2 4666
Q ss_pred EEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc
Q 001248 528 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ 607 (1114)
Q Consensus 528 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 607 (1114)
+|+.++..++| +++.|+.+++|++....
T Consensus 88 ~g~~~~~~~l~----------------------------------------------------s~~~d~~~r~~~~~~~~ 115 (365)
T 4h5i_A 88 VGCNENSTKIT----------------------------------------------------QGKGNKHLRKFKYDKVN 115 (365)
T ss_dssp EECCCCHHHHH----------------------------------------------------HTSCCCCEEEEEEETTT
T ss_pred EEECCCccEEE----------------------------------------------------EecCCCcEEEEEecCCC
Confidence 66655443333 34446666777654432
Q ss_pred eE----EEec---cCCCCCCcCeEEEcCCCCEEEEEe--CCCcEEEEEccCCccceeeccccccccccCCCCCCCCccch
Q 001248 608 LL----TSID---ADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI 678 (1114)
Q Consensus 608 ~~----~~~~---~~~~~~~v~~~~~s~d~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1114)
.. .... .......+.+++|||||+++++++ .|++|++||+.++. ....+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~-~~~~~~-------------------- 174 (365)
T 4h5i_A 116 DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT-EKFEIE-------------------- 174 (365)
T ss_dssp TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE-EEEEEE--------------------
T ss_pred ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc-EEEEeC--------------------
Confidence 11 1111 112223477899999999987654 68999999998772 222111
Q ss_pred hhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEE
Q 001248 679 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 758 (1114)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 758 (1114)
|...|.+++
T Consensus 175 -----------------------------------------------------------------------~~~~V~~v~ 183 (365)
T 4h5i_A 175 -----------------------------------------------------------------------TRGEVKDLH 183 (365)
T ss_dssp -----------------------------------------------------------------------CSSCCCEEE
T ss_pred -----------------------------------------------------------------------CCCceEEEE
Confidence 445688999
Q ss_pred EccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-
Q 001248 759 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS- 837 (1114)
Q Consensus 759 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~- 837 (1114)
|+|+|+++++++.++.+.+|.. ++..... .....|...|.+++|+||++++++++
T Consensus 184 fspdg~~l~s~s~~~~~~~~~~-----------------------~~~~~~~-~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 184 FSTDGKVVAYITGSSLEVISTV-----------------------TGSCIAR-KTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp ECTTSSEEEEECSSCEEEEETT-----------------------TCCEEEE-ECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred EccCCceEEeccceeEEEEEec-----------------------cCcceee-eecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 9999999998886655444332 2221111 11123788899999999999999988
Q ss_pred CC----eEEEEEcCCCcc----ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe-ecccccCeeEE
Q 001248 838 GG----KISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGL 908 (1114)
Q Consensus 838 dg----~i~iwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l 908 (1114)
|+ .+++|++..... ...+.+|...|++++|+| +|++||+|+.|++|+|||+.+++++.. +.+|...|++|
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v 318 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEV 318 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEE
T ss_pred CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEE
Confidence 65 588899876543 345678899999999999 999999999999999999999999887 47999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001248 909 AFSHALNVLVSSGADSQLCVWSSDGW 934 (1114)
Q Consensus 909 ~~s~d~~~l~s~s~D~~v~iwd~~~~ 934 (1114)
+|||||++|||||.|++|+||++..+
T Consensus 319 ~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 319 TISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999999753
No 81
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.7e-32 Score=307.11 Aligned_cols=310 Identities=17% Similarity=0.251 Sum_probs=240.2
Q ss_pred cCCCCceEEEEcCC---CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC-
Q 001248 356 NQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD- 431 (1114)
Q Consensus 356 ~h~~~v~~v~~spd---g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd- 431 (1114)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.... ......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEeccCC
Confidence 59999999999985 55456777778899999999887764311 1112347789999999999
Q ss_pred ---CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecC-CCCeeEEEEecCCCCEEEEeCCCCcceeEe--
Q 001248 432 ---GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-- 505 (1114)
Q Consensus 432 ---g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-- 505 (1114)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++||+.+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 7799999999999999999988665 6779999999999999 777 7999999999999999999998888
Q ss_pred -eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCC-------------eEEee
Q 001248 506 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------RTYQG 571 (1114)
Q Consensus 506 -~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~-------------~~~~~ 571 (1114)
.+|...|.+++|++ ++.+|++++.||.|++||+++......+.. .+.+++++. .....
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKE------SYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHH------HHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccce------eEEecCCCCcccccceeeccCcccccc
Confidence 78999999999876 557999999999999999987554332221 001111111 01111
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcce--------------EEEeccCCCCCCcCeEEEcCC--CCEEEE
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--------------LTSIDADGGLPASPRIRFNKD--GCLLAV 635 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~d--~~~l~~ 635 (1114)
.+...+.+++|+ ++++++++.|+.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~ 304 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLAL 304 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEE
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEE
Confidence 134467777777 66899999999999999987654 5666655 447999999999 999999
Q ss_pred EeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCc
Q 001248 636 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 715 (1114)
Q Consensus 636 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1114)
++.||.|++||+.++........
T Consensus 305 ~~~dg~i~vwd~~~~~~~~~~~~--------------------------------------------------------- 327 (366)
T 3k26_A 305 GNQVGKLYVWDLEVEDPHKAKCT--------------------------------------------------------- 327 (366)
T ss_dssp ECTTSCEEEEECCSSSGGGCEEE---------------------------------------------------------
T ss_pred EecCCcEEEEECCCCCCccccce---------------------------------------------------------
Confidence 99999999999987632110000
Q ss_pred ccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeec
Q 001248 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 781 (1114)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~ 781 (1114)
.+....+...|.+++|+|+++.|++++.||.|++|++.
T Consensus 328 ----------------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 328 ----------------------------TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ----------------------------EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ----------------------------EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 00001136889999999999999999999999999974
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.3e-32 Score=309.37 Aligned_cols=251 Identities=11% Similarity=0.096 Sum_probs=208.9
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcc------eeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE------RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
+|.+.|++++|+| + +|++|+.||.|+|||+.+++ ... .+.+|...|.+++|+
T Consensus 14 ~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~ 71 (397)
T 1sq9_A 14 AHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSY-------------------SHFVHKSGLHHVDVL 71 (397)
T ss_dssp CSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEE-------------------EEECCTTCEEEEEEE
T ss_pred hhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcce-------------------EEecCCCcEEEEEEe
Confidence 4999999999999 5 59999999999999999876 222 366899999999999
Q ss_pred CC----C---CeEEEEeCCCeEEEEEccCCce-----eeeeEeeccc-----cCCeeEEEec----CCCCeeE-EEEecC
Q 001248 430 PD----G---SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAH-----VGGVNDIAFS----HPNKQLC-VITCGD 487 (1114)
Q Consensus 430 pd----g---~~las~~~dg~i~iwd~~~~~~-----~~~~~~l~~h-----~~~V~~v~~s----~d~~~~~-l~s~~~ 487 (1114)
|+ | ++|++++.||.|++||+.+++. +. .+.+| ...|.+++|+ |+++ + |++++.
T Consensus 72 ~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~ 146 (397)
T 1sq9_A 72 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDV 146 (397)
T ss_dssp EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEET
T ss_pred cccccCCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeC
Confidence 99 9 9999999999999999998875 44 57777 5899999999 9999 7 999999
Q ss_pred CCCEEEEeCCC------Cccee-----Eee-------ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee
Q 001248 488 DKTIKVWDATN------GAKQY-----IFE-------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY 549 (1114)
Q Consensus 488 d~~i~iwd~~~------~~~~~-----~~~-------~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 549 (1114)
|+.|++||+.+ ++.+. .+. .|...|.+++|++ ++ ++++++.|+.|++||+++......+
T Consensus 147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 223 (397)
T 1sq9_A 147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNF 223 (397)
T ss_dssp TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEE
T ss_pred CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEE
Confidence 99999999998 77777 774 4889999999865 55 9999999999999999987666666
Q ss_pred cC---C---CCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC---CeEEEEECCCcceEEEeccCC----
Q 001248 550 EA---P---GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADG---- 616 (1114)
Q Consensus 550 ~~---~---~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~---- 616 (1114)
.. | ...+.+++|+ |++++|++++.| +.|++||+.+++.+..+....
T Consensus 224 ~~~~~h~~~~~~i~~i~~~---------------------~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 282 (397)
T 1sq9_A 224 ESQHSMINNSNSIRSVKFS---------------------PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 282 (397)
T ss_dssp ECCC---CCCCCEEEEEEC---------------------SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----
T ss_pred eccccccccCCccceEEEC---------------------CCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccc
Confidence 55 4 5555555554 455589999999 999999999999999887610
Q ss_pred -------CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecc
Q 001248 617 -------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658 (1114)
Q Consensus 617 -------~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1114)
+...|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~ 330 (397)
T 1sq9_A 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLN 330 (397)
T ss_dssp ---CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEe
Confidence 2457999999999999999999999999999887 4554443
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=315.12 Aligned_cols=314 Identities=8% Similarity=-0.007 Sum_probs=231.8
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
-...|.+++|||||+ ++|+++.|++|+ |...++ .+.+|...|.+++|+|+|
T Consensus 14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~----------------------~l~gh~~~v~~V~FsPdg---- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAK----------------------DINCNSKNLFHVKEFPLE---- 64 (588)
T ss_dssp CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCS----------------------CCSSBGGGTEEEEEECCC----
T ss_pred hhccEEEEEECCCCC-EEEEEcCCceee--cccccc----------------------eecCCCccEEEEEECCCC----
Confidence 458899999999999 599999999999 654442 247899999999999999
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecccc-----C
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-----P 511 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~-----~ 511 (1114)
.++.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||+|++||.+. ++..+. |.. .
T Consensus 65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s 131 (588)
T 2j04_A 65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT 131 (588)
T ss_dssp ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence 4565555554332211 22 5688999999999999 799999999999999544 666777 665 4
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCC-------eeee----cCCCCeeEEEEEecCCCeEEeeecccceeEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-------RVDY----EAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~ 580 (1114)
|.+++|+| ||++|++|+.||+|++||+.++.. ...+ .+|... +..+
T Consensus 132 v~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~---------------------V~sV 188 (588)
T 2j04_A 132 YHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDW---------------------VTHI 188 (588)
T ss_dssp EEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCC---------------------EEEE
T ss_pred EEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccccc---------------------EEEE
Confidence 99999865 668999999999999999987542 2232 233334 4455
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcce---EEEec-cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceee
Q 001248 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT 656 (1114)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~ 656 (1114)
+|+|+| +++++.|++|++||+.++.. ..++. .| ...|.+++|+ |+.|++++ +++|++||+.++......
T Consensus 189 awSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~ 261 (588)
T 2j04_A 189 VWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK 261 (588)
T ss_dssp EEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE
T ss_pred EEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc--cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE
Confidence 555565 78889999999999988774 34553 33 3579999999 68999887 699999998876321111
Q ss_pred ccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCC
Q 001248 657 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE 736 (1114)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~ 736 (1114)
+
T Consensus 262 ~------------------------------------------------------------------------------- 262 (588)
T 2j04_A 262 T------------------------------------------------------------------------------- 262 (588)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CccccccccCccccccceEEEEE--ccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 737 PNQCRSLRLPENLRATKISRLIF--TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 737 ~~~~~~~~~~~~~~~~~i~~l~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
+|...+..++| +|++..++++.++|+ ++|...
T Consensus 263 ------------gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d--------------------------------- 296 (588)
T 2j04_A 263 ------------GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED--------------------------------- 296 (588)
T ss_dssp ------------SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---------------------------------
T ss_pred ------------CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---------------------------------
Confidence 26677888899 999998999999999 988642
Q ss_pred CCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe
Q 001248 815 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 879 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~ 879 (1114)
.++++||+..+++. |+++++|+..... ...+.+ ...|.+++||| ||+++|+++
T Consensus 297 --------~~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SP-dG~~lA~~~ 349 (588)
T 2j04_A 297 --------ELHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYET-TLVIHGISLSP-DGYSIAIVY 349 (588)
T ss_dssp --------SEEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred --------cEEECCCceEEEEc-CCEEEEEECCCCc-eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence 24577777666664 6777777764333 334443 45577777777 777777665
No 84
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6e-33 Score=315.87 Aligned_cols=257 Identities=14% Similarity=0.120 Sum_probs=195.3
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcc--eeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
+.+.|++++|+|+|++ |++|+.||.|+|||+.++. ... .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~~-l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTE-FVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSSE-EECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCCE-EEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 6779999999999995 9999999999999999873 322 47889999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCc---ceeEeec-ccc
Q 001248 435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEG-HEA 510 (1114)
Q Consensus 435 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~-h~~ 510 (1114)
|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|++|++||+.+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999998773333446788999999999999999 79999999999999999887 4778887 999
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCC--CC--eeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GR--WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~--~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
.|.+++|++ ++.+|++++.|+.|++||+............ .. ....+. ..+ .+...+.+++|+|++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC------AEY--PSGGWVHAVGFSPSG 217 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE------ECC--CCSSSEEEEEECTTS
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh------hcc--cCCceEEEEEECCCC
Confidence 999999876 5579999999999999999643321110000 00 000000 011 233467777788888
Q ss_pred CEEEEEeCCCeEEEEECCCcce----EEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 587 NRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
++|++++.|+.|++||+.+++. +..+..+ ...|.+++|+|++++|++++.++.+ +|+..
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 8999999999999999999887 6666655 4479999999999999998876666 66554
No 85
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-31 Score=293.42 Aligned_cols=246 Identities=19% Similarity=0.266 Sum_probs=205.7
Q ss_pred ceeEec-cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE
Q 001248 350 TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW 428 (1114)
Q Consensus 350 ~~~~~~-~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~ 428 (1114)
+..+.+ +|.+.|++++| |++++ |++|+.||.|++||+.+++... .+..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEE
Confidence 344444 49999999999 99995 9999999999999998887655 36678999999999
Q ss_pred cCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc
Q 001248 429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH 508 (1114)
Q Consensus 429 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 508 (1114)
+|++++|++++.||.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~ 141 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAH 141 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccC
Confidence 999999999999999999999876544444578899999999999 566 799999999999999 77788899999
Q ss_pred ccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC-CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 509 ~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
...+.+++|.+. ++.++++++.|+.|++||.. .....+.. +...+.++++++++ .
T Consensus 142 ~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~---------------------~ 197 (313)
T 3odt_A 142 NASVWDAKVVSF-SENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDG---------------------H 197 (313)
T ss_dssp SSCEEEEEEEET-TTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETT---------------------E
T ss_pred CCceeEEEEccC-CCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCC---------------------e
Confidence 999999998762 44799999999999999933 33334443 45555555555554 3
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+++++.||.|++||+.+++.+..+..+. ..|.+++|+|++ .|++++.||.|++||+.++
T Consensus 198 -~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 198 -FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp -EEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred -EEEccCCCeEEEEECCchhhhhhhhcCC--ceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence 8999999999999999999999988664 479999999999 5889999999999998877
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.8e-31 Score=301.61 Aligned_cols=295 Identities=16% Similarity=0.222 Sum_probs=239.7
Q ss_pred CcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEE
Q 001248 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1114)
Q Consensus 348 ~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1114)
|..+....+|.+.+.+..+++++.. +++++.||.|++||+.+++.... ....|...|.+++
T Consensus 81 p~~~~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~ 141 (401)
T 4aez_A 81 PERVLDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVK 141 (401)
T ss_dssp CSEEEECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEE
T ss_pred cceeeeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEE
Confidence 3444454567666554444444454 66778999999999999887653 1234888999999
Q ss_pred EcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC-CCcceeEee
Q 001248 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFE 506 (1114)
Q Consensus 428 ~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~ 506 (1114)
|+|++++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.|++||+. .+..+..+.
T Consensus 142 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~ 214 (401)
T 4aez_A 142 WSHDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQ 214 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ECCCCCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEc
Confidence 99999999999999999999999988666 678999999999994 55 79999999999999999 566778899
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
+|.+.|.+++|++ ++.+|++++.|+.|++||+++......+..+...|.+++|+|++.
T Consensus 215 ~~~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~-------------------- 272 (401)
T 4aez_A 215 GHSSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS-------------------- 272 (401)
T ss_dssp CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST--------------------
T ss_pred CCCCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC--------------------
Confidence 9999999999876 558999999999999999998877777777777788888777664
Q ss_pred CEEEEEe--CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEE--eCCCcEEEEEccCCccceeecccccc
Q 001248 587 NRFLAAG--DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAY 662 (1114)
Q Consensus 587 ~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~ 662 (1114)
..+++++ .|+.|++||+.+++.+..+..+ ..+.+++|+|++++++++ +.||.|++|++.++. .....
T Consensus 273 ~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~-~~~~~----- 343 (401)
T 4aez_A 273 NLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG-LTKQV----- 343 (401)
T ss_dssp TEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE-EEEEE-----
T ss_pred CEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc-ceeEE-----
Confidence 2455554 7999999999999999888643 369999999999999995 489999999987752 11110
Q ss_pred ccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccc
Q 001248 663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS 742 (1114)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 742 (1114)
.+
T Consensus 344 -------------------------------------------------------------------~~----------- 345 (401)
T 4aez_A 344 -------------------------------------------------------------------DI----------- 345 (401)
T ss_dssp -------------------------------------------------------------------EE-----------
T ss_pred -------------------------------------------------------------------Ee-----------
Confidence 00
Q ss_pred cccCccccccceEEEEEccCcceeeecccCceEEEEeecc
Q 001248 743 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR 782 (1114)
Q Consensus 743 ~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~ 782 (1114)
.+|...|.+++|+|++..|++++.||.|++|++..
T Consensus 346 -----~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 346 -----PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp -----ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred -----cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 12667899999999999999999999999998764
No 87
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.6e-32 Score=303.86 Aligned_cols=294 Identities=11% Similarity=0.081 Sum_probs=215.9
Q ss_pred cceEEEEEccCcceeeecccC-------ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEE
Q 001248 752 TKISRLIFTNSGNAILALASN-------AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 824 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v 824 (1114)
.+|.+++|+||++.|++++.+ +.|++|++............ ......+. .|...+.++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~-------------~~~~~~l~--~~~~~v~s~ 79 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH-------------ILSEFALE--DNDDSPTAI 79 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE-------------EEEEEECC--TTSCCCCEE
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee-------------eeeEEEcc--CCCCceEEE
Confidence 579999999999999998754 35999998643211000000 00000122 266777777
Q ss_pred EEeeCCCEEEEE-----------e-CCeEEEEEcCCCcccc---------ccCCCCCCeEEEEEecCCCcEEEEE--eCC
Q 001248 825 ALSKNDSYVMSA-----------S-GGKISLFNMMTFKTMA---------TFMPPPPAATFLAFHPQDNNIIAIG--MDD 881 (1114)
Q Consensus 825 ~~s~d~~~l~~~-----------~-dg~i~iwd~~~~~~~~---------~~~~~~~~i~~l~~sp~d~~~la~g--~~d 881 (1114)
++ +++.+++| + |+.+++|++.+..... ....+...+.+++||| ||++||++ +.|
T Consensus 80 ~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d 156 (365)
T 4h5i_A 80 DA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVP 156 (365)
T ss_dssp EE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSS
T ss_pred Ee--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCC
Confidence 65 55666665 2 5679999987543221 1223455689999999 89887654 478
Q ss_pred CcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEc
Q 001248 882 SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 961 (1114)
Q Consensus 882 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fs 961 (1114)
++|+|||+.+++++..+. |...|++|+|+|||++|++++.|+ +++|+..+++... .....+|. ..+.+++|+
T Consensus 157 ~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~---~~~~~~~~---~~v~~v~fs 228 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIA---RKTDFDKN---WSLSKINFI 228 (365)
T ss_dssp CEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEE---EECCCCTT---EEEEEEEEE
T ss_pred CEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCccee---eeecCCCC---CCEEEEEEc
Confidence 999999999999988886 778899999999999999998665 6666666544321 12223333 368999999
Q ss_pred cCCcEEEE-EeCC----eEEEEEcCCCcee--eeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 962 QDQIHFLV-VHET----QLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 962 pdg~~l~~-~~d~----~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
|||.++++ +.|+ .+++|++...... ......+|...|++++|||||++||+|+.|++|+|||+.+++.+..+.
T Consensus 229 pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~ 308 (365)
T 4h5i_A 229 ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK 308 (365)
T ss_dssp ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec
Confidence 99999998 4555 5888998776542 223345789999999999999999999999999999999999988753
Q ss_pred CCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1035 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1035 ~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
.+|... |. +++|+| |+++|++|+.|++|+||+++...
T Consensus 309 ------~gH~~~-V~--~v~fSp-dg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 309 ------QAHSFA-IT--EVTISP-DSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp ------TSSSSC-EE--EEEECT-TSCEEEEEETTSEEEEEECCTTT
T ss_pred ------CcccCC-EE--EEEECC-CCCEEEEEeCCCeEEEEEcCCCC
Confidence 244333 55 999999 79999999999999999997654
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-32 Score=309.10 Aligned_cols=339 Identities=10% Similarity=0.059 Sum_probs=220.6
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCC--ceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~--~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
+..|.++|.+++|+|||++||+|+.|+.|+|||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|++|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 3446679999999999999999999999999999987 4333 6889999999999999998 7999999999999
Q ss_pred EeCCCCc---ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCC---eeeecC-CCCeeEEEEEecCCC
Q 001248 494 WDATNGA---KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEA-PGRWCTTMAYSADGT 566 (1114)
Q Consensus 494 wd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~-~~~~v~~~~~s~~g~ 566 (1114)
||+.+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||+++... ...+.. |...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~--- 156 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP--- 156 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT---
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC---
Confidence 9999887 6777888999999999866 557999999999999999987653 344444 555555555555
Q ss_pred eEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC------------------cceEEEeccCCCCCCcCeEEEcC
Q 001248 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------------------VQLLTSIDADGGLPASPRIRFNK 628 (1114)
Q Consensus 567 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~v~~~~~s~ 628 (1114)
++++|++++.|+.|++||+.. ++.+..+ .+...|.+++|+|
T Consensus 157 ------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp 215 (377)
T 3dwl_C 157 ------------------NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSP 215 (377)
T ss_dssp ------------------TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECT
T ss_pred ------------------CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECC
Confidence 445899999999999999853 4444444 3455799999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCc
Q 001248 629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1114)
Q Consensus 629 d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1114)
++++|++++.||.|++||+.++......+..
T Consensus 216 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------------------------------------------- 246 (377)
T 3dwl_C 216 SGNALAYAGHDSSVTIAYPSAPEQPPRALIT------------------------------------------------- 246 (377)
T ss_dssp TSSCEEEEETTTEEC-CEECSTTSCEEECCC-------------------------------------------------
T ss_pred CCCEEEEEeCCCcEEEEECCCCCCcceeeEe-------------------------------------------------
Confidence 9999999999999999999877321110000
Q ss_pred cccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCC
Q 001248 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788 (1114)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 788 (1114)
+ ..|...|.+++|+|++++|++++.++.+ +|+.........
T Consensus 247 ------------------------------------~--~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 287 (377)
T 3dwl_C 247 ------------------------------------V--KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHT 287 (377)
T ss_dssp ------------------------------------E--ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCS
T ss_pred ------------------------------------e--cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEE
Confidence 0 1266789999999999988888777666 665542111000
Q ss_pred CCccccccccccCCCCCcccc-ccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEE
Q 001248 789 GKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA 866 (1114)
Q Consensus 789 ~~~~~~~~~~~w~~~~g~~~~-~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 866 (1114)
. .++........ .............++.|++....+.... .|... ........|...|++++
T Consensus 288 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~H~~~i~~~~ 351 (377)
T 3dwl_C 288 R---------DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ-------SISSLPTVHQNMIATLR 351 (377)
T ss_dssp B---------CCCSCCCCCCBSSSSSBCCCCCC--------------------------------CCCSSSCSSCEEEEE
T ss_pred e---------eecccccccccccccccccccccccccccccccccccchhhccccc-------cccccCccccceeEEEe
Confidence 0 00000000000 0000000112234444444333332222 12211 12233456899999999
Q ss_pred EecCCCc---EEEEEeCCCcEEEEEc
Q 001248 867 FHPQDNN---IIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 867 ~sp~d~~---~la~g~~dg~v~iwd~ 889 (1114)
+.+.++. .|++|+.||.|++||+
T Consensus 352 ~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 352 PYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccCCCCCceEEEEeecCCCcEEEecC
Confidence 8763444 7999999999999985
No 89
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.9e-30 Score=299.21 Aligned_cols=239 Identities=17% Similarity=0.233 Sum_probs=197.7
Q ss_pred CceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe
Q 001248 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY 439 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 439 (1114)
-.+.|+||+++ +||+|. |++|+|||+.+|+..... .+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence 35789999865 588875 999999999999876521 2467888999999999999999999
Q ss_pred CCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeeccccCEEEEeec
Q 001248 440 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSVCPH 518 (1114)
Q Consensus 440 ~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~ 518 (1114)
.||+|+|||+.+++.+. .+.+|...|.+++|+ +. ++++|+.|+.+++||.... ..+.++.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999998776 688999999998885 55 7999999999999998864 4567889999999999976
Q ss_pred cCCCceEEEEEecCCeEEEEEcCCCCC----eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE--E
Q 001248 519 HKENIQFIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA--A 592 (1114)
Q Consensus 519 ~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~--~ 592 (1114)
+ ++.++++++.|+.+++|+..+.+. ......+...|.+++|+|++. +.+++ |
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~--------------------~~la~~~g 297 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS--------------------NVLATGGG 297 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT--------------------TEEEEEEC
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcc--------------------cEEEEEee
Confidence 5 557999999999999999987653 234455666677777776654 23444 4
Q ss_pred eCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEe--CCCcEEEEEccCC
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDG 650 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--~dg~i~iwd~~~~ 650 (1114)
+.|+.|++||+.+++.+..+..+. .+.++.|+++++.+++++ .|+.|++||+.++
T Consensus 298 s~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 298 TSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp TTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred cCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 579999999999999999887654 488999999999988875 6899999998776
No 90
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.5e-30 Score=286.47 Aligned_cols=283 Identities=18% Similarity=0.254 Sum_probs=214.8
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc
Q 001248 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 501 (1114)
..++|+||+++ +||+| .|++|+|||+.+++.++. ..+.+|...|.+++|+|+++ ++++|+.|++|++||++++++
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCcee
Confidence 35789999987 77766 589999999999987653 35668889999999999999 799999999999999999999
Q ss_pred eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
+..+.+|...+.++.+. +.++++++.++.+++|+.....
T Consensus 102 ~~~~~~h~~~~~~~~~~----~~~l~s~~~~~~~~~~~~~~~~------------------------------------- 140 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAE------------------------------------- 140 (318)
T ss_dssp EEEEECCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSS-------------------------------------
T ss_pred EEEecCccceEEEeecC----CCEEEEEecCCceEeeecCCCc-------------------------------------
Confidence 99999999888776532 2467777777766666554311
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccc
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 661 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 661 (1114)
..+..+..| ...+..+.++++++++++++.||.|++||+.+++........
T Consensus 141 -------------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-- 191 (318)
T 4ggc_A 141 -------------------------HHVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-- 191 (318)
T ss_dssp -------------------------CEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE--
T ss_pred -------------------------eeEEEEcCc--cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee--
Confidence 122233333 346788999999999999999999999998776211110000
Q ss_pred cccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccc
Q 001248 662 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR 741 (1114)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~ 741 (1114)
T Consensus 192 -------------------------------------------------------------------------------- 191 (318)
T 4ggc_A 192 -------------------------------------------------------------------------------- 191 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCc
Q 001248 742 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 821 (1114)
Q Consensus 742 ~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v 821 (1114)
... +...|
T Consensus 192 -----~~~-------------------------------------------------------------------~~~~v 199 (318)
T 4ggc_A 192 -----FTQ-------------------------------------------------------------------HQGAV 199 (318)
T ss_dssp -----ECC-------------------------------------------------------------------CCSCE
T ss_pred -----ecc-------------------------------------------------------------------cCCce
Confidence 000 23334
Q ss_pred cEEEEeeCCCEE---EEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEE--eCCCcEEEEEcccceEE
Q 001248 822 PCFALSKNDSYV---MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG--MDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 822 ~~v~~s~d~~~l---~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g--~~dg~v~iwd~~~~~~~ 895 (1114)
.++++++++..+ ++++ +++|++||........... +...+..+.|+| ++..++++ +.||.|++||+.+++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~ 277 (318)
T 4ggc_A 200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKV 277 (318)
T ss_dssp EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEE
Confidence 444444443322 2334 6889999988776655544 567799999999 66666554 48999999999999999
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
..+.+|.+.|++|+|+||+++||||+.|++|+|||+..
T Consensus 278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 99999999999999999999999999999999999975
No 91
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.7e-30 Score=299.67 Aligned_cols=299 Identities=15% Similarity=0.222 Sum_probs=225.2
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc
Q 001248 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~ 501 (1114)
.++.|+||++ .+||+|. |++|+|||..+|+... ...+.+|...|++|+|+|+|+ +|++|+.|++|++||+.++++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 5778999986 4777775 8999999999998664 335668889999999999999 799999999999999999999
Q ss_pred eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe-eeecCCCCeeEEEEEecCCCeEEeeecccceeEE
Q 001248 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580 (1114)
Q Consensus 502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~ 580 (1114)
+..+.+|...+.+++++ +.++++|+.|+.+++||....... ..+..|...+..+.++
T Consensus 182 ~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~------------------ 239 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA------------------ 239 (420)
T ss_dssp EEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC------------------
T ss_pred EEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec------------------
Confidence 99999999999998863 368999999999999998865433 3445555555555554
Q ss_pred EecCCCCEEEEEeCCCeEEEEECCCcce----EEEeccCCCCCCcCeEEEcCCC-CEEEEE--eCCCcEEEEEccCCccc
Q 001248 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDG-CLLAVS--TNDNGIKILATSDGIRL 653 (1114)
Q Consensus 581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~d~-~~l~~~--~~dg~i~iwd~~~~~~~ 653 (1114)
++++++++++.|+.+++|+..+++. +.....+ ...|.+++|+|++ .+++++ +.|++|++||+.++. .
T Consensus 240 ---~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-~ 313 (420)
T 4gga_A 240 ---PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH--QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-C 313 (420)
T ss_dssp ---TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC--SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-E
T ss_pred ---CCCCeeeeeeccccceEEeeccccccceeeeeeccc--CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-c
Confidence 4455899999999999999987653 3344433 4578999999955 555553 578999999987661 1
Q ss_pred eeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEecc
Q 001248 654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE 733 (1114)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~ 733 (1114)
...+.
T Consensus 314 ~~~~~--------------------------------------------------------------------------- 318 (420)
T 4gga_A 314 LSAVD--------------------------------------------------------------------------- 318 (420)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred ceeec---------------------------------------------------------------------------
Confidence 11110
Q ss_pred CCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC
Q 001248 734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813 (1114)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~ 813 (1114)
T Consensus 319 -------------------------------------------------------------------------------- 318 (420)
T 4gga_A 319 -------------------------------------------------------------------------------- 318 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccEEEEeeCCCEEEEEe---CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 814 DSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 814 ~~~~~~~v~~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
+...+.++.++++++.+++++ |+.|+|||+.+++++.++.+|...|++++|+| ++++||+|+.||+|+|||+.
T Consensus 319 ---~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 319 ---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF 394 (420)
T ss_dssp ---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred ---cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence 223456677777777777653 78999999999999999999999999999999 99999999999999999998
Q ss_pred cceEEEeecccccCeeEEEEcC
Q 001248 891 VDEVKSKLKGHSKRITGLAFSH 912 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~ 912 (1114)
..........+...+....|..
T Consensus 395 ~~~~~~~~~~~~~~~~~~s~~~ 416 (420)
T 4gga_A 395 ELDPARRREREKASAAKSSLIH 416 (420)
T ss_dssp CSSCC-----------------
T ss_pred CCCccchhhhccCCccccccCC
Confidence 7666666665655554444433
No 92
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.3e-31 Score=285.97 Aligned_cols=248 Identities=11% Similarity=0.070 Sum_probs=202.9
Q ss_pred CCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCC--CccccccCCCCCCeEEEEEecC-CCcEEEEEeCCCcEEEEEccc
Q 001248 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~--~~~~~~~~~~~~~i~~l~~sp~-d~~~la~g~~dg~v~iwd~~~ 891 (1114)
+|...|.+++|+|+|++|++++ |++|+|||+.+ .+.+.++.+|...|.+++|+++ ++++||+|+.||+|++||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 3999999999999999999999 99999999974 4677889999999999999862 388999999999999999988
Q ss_pred ce--EEEeecccccCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC----
Q 001248 892 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD---- 963 (1114)
Q Consensus 892 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd---- 963 (1114)
++ .+..+.+|...|++++|+|+ +.+|++++.|++|++||+.+..... .....+|. ..|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~---~~~~~~h~---~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---PIIIDAHA---IGVNSASWAPATIEE 160 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC---CEEEECCS---SCEEEEEECCCC---
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee---eeeeeccc---CccceEeecCCcccc
Confidence 74 56778899999999999998 8999999999999999998753211 12233444 47899999997
Q ss_pred ---------CcEEEE-EeCCeEEEEEcCCCc----eeeeeecCCCCcCeeEEEECCCC---CEEEEEEcCCeEEEEEcCC
Q 001248 964 ---------QIHFLV-VHETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 964 ---------g~~l~~-~~d~~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
+++|++ +.|+.|++||+.+++ ....+ .+|...|.+++|+|++ .+|++++.|++|+|||+.+
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 568888 689999999998776 33333 4899999999999995 8999999999999999987
Q ss_pred Cee--eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1027 LKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1027 ~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
+.. ..... ...+| ...+. +++|+| ++++|++++.||+|++|+...
T Consensus 239 ~~~~~~~~~~----~~~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 239 EQGPWKKTLL----KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp TTSCCEEEES----SSSCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECT
T ss_pred CCCccceeee----ecccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECC
Confidence 531 11111 01122 22244 899999 689999999999999999864
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-30 Score=298.49 Aligned_cols=290 Identities=15% Similarity=0.171 Sum_probs=221.0
Q ss_pred cCCCCC--eeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 417 KDPGVS--VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 417 ~~h~~~--V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw 161 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY 161 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence 355544 45566664 56888889999999999998866522 223889999999999999 79999999999999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
|+.+++.+..+.+|...|.+++|. +.++++++.||.|++||++.. .....+..|...|.+++|+|++
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-------- 229 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-------- 229 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS--------
T ss_pred ECcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC--------
Confidence 999999999999999999999983 369999999999999999843 3444555566656655555554
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCC-CEEEEEe--CCCcEEEEEccCC
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVST--NDNGIKILATSDG 650 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~--~dg~i~iwd~~~~ 650 (1114)
+++++++.|+.|++||+.+++.+..+..+ ...|.+++|+|++ .++++++ .|+.|++||+.++
T Consensus 230 -------------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 230 -------------LQLASGGNDNVVQIWDARSSIPKFTKTNH--NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp -------------SEEEEEETTSCEEEEETTCSSEEEEECCC--SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred -------------CEEEEEeCCCeEEEccCCCCCccEEecCC--cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 47999999999999999999998888765 4479999999976 5566654 6999999998765
Q ss_pred ccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
.....+.
T Consensus 295 -~~~~~~~------------------------------------------------------------------------ 301 (401)
T 4aez_A 295 -ARVNTVD------------------------------------------------------------------------ 301 (401)
T ss_dssp -CEEEEEE------------------------------------------------------------------------
T ss_pred -CEEEEEe------------------------------------------------------------------------
Confidence 1111110
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
T Consensus 302 -------------------------------------------------------------------------------- 301 (401)
T 4aez_A 302 -------------------------------------------------------------------------------- 301 (401)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCccEEEEeeCCCEEEE--Ee-CCeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001248 811 DVTDSNPEEAVPCFALSKNDSYVMS--AS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 885 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~d~~~l~~--~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~ 885 (1114)
+...+.+++|+|+++++++ |+ ||.|++||+.++... ..+.+|...|.+++|+| ++.+|++++.||.|+
T Consensus 302 ------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 302 ------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLK 374 (401)
T ss_dssp ------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEE
T ss_pred ------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence 2234566667777777666 33 677777777765443 33668899999999999 999999999999999
Q ss_pred EEEcccceEEEeec
Q 001248 886 IYNVRVDEVKSKLK 899 (1114)
Q Consensus 886 iwd~~~~~~~~~l~ 899 (1114)
+|++.+++.+....
T Consensus 375 iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 375 FWRVYDGDHVKRPI 388 (401)
T ss_dssp EEECCC--------
T ss_pred EEECCCCccccccc
Confidence 99999988766543
No 94
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=2.2e-30 Score=302.32 Aligned_cols=274 Identities=12% Similarity=0.198 Sum_probs=201.2
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCC------------CC
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG------------VS 422 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~------------~~ 422 (1114)
+.|.+.|++++|+|+|++ ||+|+.||.|+|||+.+++....... ... .....+.+|. ..
T Consensus 25 ~~~~~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~-------~~~-~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSR-------GEY-NVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCC-------CCE-EEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCcccc-------cce-eEecccccccccccccccccccCc
Confidence 457899999999999995 99999999999999998763110000 000 0011467887 88
Q ss_pred eeEEEEcCCC--CeEEEEeCCCeEEEEEccCCceee------------------------------------ee-Eeecc
Q 001248 423 VNRVIWSPDG--SLFGVAYSRHIVQIYSYHGGDEVR------------------------------------QH-LEIDA 463 (1114)
Q Consensus 423 V~~l~~spdg--~~las~~~dg~i~iwd~~~~~~~~------------------------------------~~-~~l~~ 463 (1114)
|.+++|+|++ .+|++++.|++|++||+.++.... .. ....+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 899999999999999998754311 00 11368
Q ss_pred ccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC-Cccee-------EeeccccCEEEEeeccCCCceEEEEEecCCeE
Q 001248 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQY-------IFEGHEAPVYSVCPHHKENIQFIFSTALDGKI 535 (1114)
Q Consensus 464 h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i 535 (1114)
|...|.+++|+|+++ +|++| .|++|++||+.+ ++.+. .+.+|...|.+++|+++.. .+|++++.||.|
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i 251 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI 251 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence 999999999999999 78888 799999999984 44444 3568999999999875431 699999999999
Q ss_pred EEEEcCCCCC----eeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC-cceEE
Q 001248 536 KAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLT 610 (1114)
Q Consensus 536 ~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~ 610 (1114)
++||+++... ...+..+.... ....+ ..+...+..++|+|++++|++++. +.|++||+.+ ++.+.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPS--------NRSFF-SEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-------------CCHH-HHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred EEEECcCCccccceeeEeccCCCcc--------ccccc-cccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence 9999998765 44454444300 00000 001124555566666668999988 9999999997 88888
Q ss_pred EeccCCCCCC-------------cCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 611 SIDADGGLPA-------------SPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 611 ~~~~~~~~~~-------------v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
.+..+..... +..++|+|++++|++++.||.|++||+.++.
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 8876642111 2349999999999999999999999999873
No 95
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=3.6e-31 Score=291.96 Aligned_cols=226 Identities=19% Similarity=0.303 Sum_probs=175.2
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCC--CCeeEEEEecCCCCEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK 492 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~ 492 (1114)
++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 57899999999999999999999999999999999987532 23468899999999999874 66 799999999999
Q ss_pred EEeCCCCc--ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCC---eeeecCCCCeeEEEEEecCCCe
Q 001248 493 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTR 567 (1114)
Q Consensus 493 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~g~~ 567 (1114)
+||+++++ .+..+.+|...|.+++|+++.++.+|++++.|+.|++||++.... ...+..|...+.+++|+|++..
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 566788999999999998876678999999999999999987543 2344567778888888887420
Q ss_pred -EEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCc---ceEEEeccCCCCCCcCeEEEcCCC----CEEEEEeCC
Q 001248 568 -TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDG----CLLAVSTND 639 (1114)
Q Consensus 568 -~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~d~----~~l~~~~~d 639 (1114)
.+..+... .....+.+|++++.|+.|++||+..+ +.+..+..| ...|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCS-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccc-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCCceEEEEcCC
Confidence 00000000 01122468999999999999999755 345555544 5589999999986 899999999
Q ss_pred CcEEEEEccCC
Q 001248 640 NGIKILATSDG 650 (1114)
Q Consensus 640 g~i~iwd~~~~ 650 (1114)
|+|++|++.+.
T Consensus 238 ~~v~iw~~~~~ 248 (316)
T 3bg1_A 238 GRVFIWTCDDA 248 (316)
T ss_dssp CEEEEEECSST
T ss_pred CeEEEEEccCc
Confidence 99999998653
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=7.9e-30 Score=288.94 Aligned_cols=293 Identities=17% Similarity=0.200 Sum_probs=212.9
Q ss_pred cccCCCCCeeEEEEcCC---CCeEEEEeCCCeEEEEEccC-CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCC
Q 001248 415 LVKDPGVSVNRVIWSPD---GSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 490 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spd---g~~las~~~dg~i~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~ 490 (1114)
.+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+. ..+.+|...|.+++|+|+++ +|++++.|+.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence 57899999999999999 69999999999999999997 44332 25778999999999999999 7999999999
Q ss_pred EEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEe
Q 001248 491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
|++||+.+++.+. +.+|...|.+++|.+.+++.++++++.|+.|++||+++.+..
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------------------ 164 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM------------------------ 164 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS------------------------
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE------------------------
Confidence 9999999988765 556889999999866666677777777777777776653332
Q ss_pred eecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
..+..+. .+.++.+. +..+++++.++.+.+|++...
T Consensus 165 ---------------------------------------~~~~~~~---~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~ 200 (368)
T 3mmy_A 165 ---------------------------------------MVLQLPE---RCYCADVI--YPMAVVATAERGLIVYQLENQ 200 (368)
T ss_dssp ---------------------------------------EEEECSS---CEEEEEEE--TTEEEEEEGGGCEEEEECSSS
T ss_pred ---------------------------------------EEEecCC---CceEEEec--CCeeEEEeCCCcEEEEEeccc
Confidence 2222221 12222332 346667777778888877554
Q ss_pred ccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
......+..
T Consensus 201 ~~~~~~~~~----------------------------------------------------------------------- 209 (368)
T 3mmy_A 201 PSEFRRIES----------------------------------------------------------------------- 209 (368)
T ss_dssp CEEEEECCC-----------------------------------------------------------------------
T ss_pred cchhhhccc-----------------------------------------------------------------------
Confidence 221111100
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
.....+..+.+.++...
T Consensus 210 ------------------~~~~~~~~~~~~~~~~~--------------------------------------------- 226 (368)
T 3mmy_A 210 ------------------PLKHQHRCVAIFKDKQN--------------------------------------------- 226 (368)
T ss_dssp ------------------SCSSCEEEEEEEECTTS---------------------------------------------
T ss_pred ------------------cccCCCceEEEcccCCC---------------------------------------------
Confidence 01111122222211110
Q ss_pred cCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCC---ccccccCCCCC------------CeEEEEEecCCCcE
Q 001248 811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF---KTMATFMPPPP------------AATFLAFHPQDNNI 874 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~---~~~~~~~~~~~------------~i~~l~~sp~d~~~ 874 (1114)
++ ..+++++ ||.|++|++... .....+..|.. .|++++|+| ++++
T Consensus 227 ----------------~~--~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~ 287 (368)
T 3mmy_A 227 ----------------KP--TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGT 287 (368)
T ss_dssp ----------------CE--EEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT-TTCC
T ss_pred ----------------CC--CeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec-CCCE
Confidence 00 1155665 777777777765 34445555554 799999999 8999
Q ss_pred EEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 875 la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
|++|+.||.|++||+.+++++..+.+|...|++++|+|++++|++++.|+..+.|++-.
T Consensus 288 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 288 LATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 99999999999999999999999999999999999999999999999998766665543
No 97
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=1.2e-30 Score=287.76 Aligned_cols=246 Identities=12% Similarity=0.143 Sum_probs=199.1
Q ss_pred CCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCc--cccccCCCCCCeEEEEEecC-CCcEEEEEeCCCcEEEEEccc
Q 001248 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~sp~-d~~~la~g~~dg~v~iwd~~~ 891 (1114)
+|...|.+++|+|+|++|++++ |++|+|||+.++. .+..+.+|...|.+++|+++ ++++||+|+.|++|++||+.+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 3999999999999999999999 9999999998764 46778999999999999862 488999999999999999998
Q ss_pred c--eEEEeecccccCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC----
Q 001248 892 D--EVKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD---- 963 (1114)
Q Consensus 892 ~--~~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd---- 963 (1114)
+ +.+..+.+|...|++++|+|+ +.+|++++.|++|++|++..... ........+|. ..+.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--~~~~~~~~~h~---~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--WEVKKINNAHT---IGCNAVSWAPAVVPG 165 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--EEECCBTTSSS---SCBCCCEECCCCCC-
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--cceeeeecccc---CCcceEEEccccCCc
Confidence 7 466778899999999999998 78999999999999999987432 11223344444 37889999998
Q ss_pred -------------CcEEEE-EeCCeEEEEEcCCCc---eeeeeecCCCCcCeeEEEECCCC----CEEEEEEcCCeEEEE
Q 001248 964 -------------QIHFLV-VHETQLAIFETTKLE---CVKQWVPRESSAPITHATFSCDS----QLVYACFLDATVCVF 1022 (1114)
Q Consensus 964 -------------g~~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~h~~~v~~l~~s~dg----~~l~s~s~Dg~I~vw 1022 (1114)
+++|++ +.|+.|++||+.+.. ++..+ .+|...|.+++|+|++ .+|++++.||+|++|
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l--~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL--EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC--BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec--ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 467888 689999999997552 34443 4899999999999987 889999999999999
Q ss_pred EcCCCe---e-eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1023 SAANLK---L-RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1023 d~~~~~---~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
++.+.. . ...+. +| ...+. +++|+| ++++|++++.||+|++|+...
T Consensus 244 ~~~~~~~~~~~~~~~~-------~~-~~~v~--~v~~sp-~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLH-------KF-NDVVW--HVSWSI-TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp ECSSTTCCCCBCCEEE-------EC-SSCEE--EEEECT-TTCCEEEEESSSCEEEEEECT
T ss_pred EccCccccchhhhhhh-------cC-CCcEE--EEEEcC-CCCEEEEEcCCCeEEEEEECC
Confidence 997631 1 11111 22 22255 899999 689999999999999999864
No 98
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=7.2e-30 Score=286.82 Aligned_cols=227 Identities=12% Similarity=0.131 Sum_probs=179.7
Q ss_pred ccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCcee-eeeEeeccccCCeeEEEecC--CCCeeEEEEecCCCC
Q 001248 414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKT 490 (1114)
Q Consensus 414 ~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~ 490 (1114)
.++.+|.+.|++++|+|++++||+|+.||.|+|||+.++... .....+.+|...|.+++|+| |++ +|++++.|++
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCe
Confidence 367899999999999999999999999999999999976422 33446789999999999999 577 7999999999
Q ss_pred EEEEeCCCC---------cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEE
Q 001248 491 IKVWDATNG---------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 561 (1114)
Q Consensus 491 i~iwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 561 (1114)
|++||+.++ +.+..+.+|...|.+++|++..++.++++++.|+.|++||+++......+... ..+..+.+
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~ 161 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT-SEMKVLSI 161 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE-EEEESCSC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc-cccccccc
Confidence 999999887 55778889999999999987643689999999999999999887654432210 00111111
Q ss_pred ecCCCeEEeeecccceeEEEecCC---CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCC----CEEE
Q 001248 562 SADGTRTYQGFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLA 634 (1114)
Q Consensus 562 s~~g~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~----~~l~ 634 (1114)
.+ ..+...+.++.|+|+ +..+++++.++.+.+|+...++.........+...|.+++|+|++ ++|+
T Consensus 162 ~~-------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 162 PP-------ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp CC-------SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred cc-------CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence 11 112335667777776 789999999999999988887763333333445689999999998 8999
Q ss_pred EEeCCCcEEEEEccCC
Q 001248 635 VSTNDNGIKILATSDG 650 (1114)
Q Consensus 635 ~~~~dg~i~iwd~~~~ 650 (1114)
+++.||.|++||+.++
T Consensus 235 s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 235 TGCKDGRIRIFKITEK 250 (351)
T ss_dssp EEETTSCEEEEEEEEC
T ss_pred EEcCCCeEEEEeCCCC
Confidence 9999999999998765
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.4e-29 Score=291.58 Aligned_cols=233 Identities=20% Similarity=0.340 Sum_probs=204.4
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
.|...|+|++| ++++ +++|+.||.|++||+.+++... .+.+|.+.|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~~-l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQK-IVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSSE-EEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCCE-EEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 47788999888 7885 9999999999999999988765 47889999999999 89999
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce---eEeeccccCE
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---YIFEGHEAPV 512 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~h~~~v 512 (1114)
++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . ++++|+.|++|++||+.++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999998765 6889999999999974 4 6999999999999999988776 6778999999
Q ss_pred EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE
Q 001248 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~ 592 (1114)
.+++| ++.++++++.||.|++||+++......+..+...+.++.+. +++++++
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~~g 312 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSG 312 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEEEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-----------------------CCEEEEE
Confidence 99997 34799999999999999999988887777777777666652 2369999
Q ss_pred eCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+.||.|++||+.+++.+..+..|. ..|.+++| ++.+|++|+.||.|++||+.++
T Consensus 313 ~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 313 SSDNTIRLWDIECGACLRVLEGHE--ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCS--SCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred eCCCeEEEEECCCCCEEEEEeCCc--CcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 999999999999999999998664 47888888 7899999999999999998765
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.2e-29 Score=284.33 Aligned_cols=294 Identities=13% Similarity=0.107 Sum_probs=229.9
Q ss_pred cccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
+..+|.+.|.+++|+|++++|++++.|+.|+|||+.+++.......+.+|...|.+++|+|+++. ++++|+.|+.|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence 35689999999999999999999999999999999988732223356689999999999999882 37899999999999
Q ss_pred eC-CCCcceeEeec--cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC---------CCCeeeecCCCCeeEEEEEe
Q 001248 495 DA-TNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN---------LGSRVDYEAPGRWCTTMAYS 562 (1114)
Q Consensus 495 d~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s 562 (1114)
|+ .+++ ...+.+ |...|.+++|++ +.++++++.|+.|++||+++ ......+. +...+.++
T Consensus 85 d~~~~~~-~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~--- 156 (342)
T 1yfq_A 85 DLIGSPS-FQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM--- 156 (342)
T ss_dssp CSSSSSS-EEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE---
T ss_pred EeccCCc-eEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE---
Confidence 99 7765 478888 999999999977 47999999999999999986 44333333 44444444
Q ss_pred cCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC-cceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeCCC
Q 001248 563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN 640 (1114)
Q Consensus 563 ~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~dg 640 (1114)
+|++++ +++++.++.|++||+.+ +..........+...+.+++|+| +++++++++.||
T Consensus 157 ------------------~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 157 ------------------DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp ------------------EECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred ------------------EecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence 444444 88999999999999988 55332222223345789999999 999999999999
Q ss_pred cEEEEEccCC-----ccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCc
Q 001248 641 GIKILATSDG-----IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 715 (1114)
Q Consensus 641 ~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1114)
.|++|++... ......+..|..
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 243 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRL----------------------------------------------------- 243 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCC-----------------------------------------------------
T ss_pred cEEEEEEcCCCcccccccceeeecccc-----------------------------------------------------
Confidence 9999998654 111111110000
Q ss_pred ccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccc
Q 001248 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV 795 (1114)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 795 (1114)
.
T Consensus 244 -------------------------------------~------------------------------------------ 244 (342)
T 1yfq_A 244 -------------------------------------N------------------------------------------ 244 (342)
T ss_dssp -------------------------------------C------------------------------------------
T ss_pred -------------------------------------c------------------------------------------
Confidence 0
Q ss_pred cccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCC-CCCeEEEEEecCCCc
Q 001248 796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNN 873 (1114)
Q Consensus 796 ~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~ 873 (1114)
..+..|...|.+++|+|++++|++++ ||.|++||+.+++.+..+.+| ...|.+++ | +++
T Consensus 245 ----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~ 305 (342)
T 1yfq_A 245 ----------------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDN 305 (342)
T ss_dssp ----------------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSS
T ss_pred ----------------ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCC
Confidence 00012677899999999999999998 899999999999999999998 99999999 7 899
Q ss_pred EEEEEeCCCc-EEEEE
Q 001248 874 IIAIGMDDSS-IQIYN 888 (1114)
Q Consensus 874 ~la~g~~dg~-v~iwd 888 (1114)
+|++|+.||. .+.|.
T Consensus 306 ~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 306 ILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEEEECTHHHHCSS
T ss_pred eEEEEecCCccccccc
Confidence 9999999998 44444
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=3.8e-29 Score=276.98 Aligned_cols=282 Identities=17% Similarity=0.285 Sum_probs=229.4
Q ss_pred eEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEE
Q 001248 754 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV 833 (1114)
Q Consensus 754 i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l 833 (1114)
...++||+++ +++++.|++|+|||+. +|+++.. +...+|...|.+++|+|++++|
T Consensus 28 ~~~l~WS~~~--~lAvg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp CBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTTSSEE
T ss_pred ceEEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCeEEEEEECCCCCEE
Confidence 4568999886 4445569999998765 4443322 2223488899999999999999
Q ss_pred EEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-eEEEeecccccCeeEEEEc
Q 001248 834 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAFS 911 (1114)
Q Consensus 834 ~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s 911 (1114)
++|+ ||+|++||+.+++.+..+.+|...+.++.+. +.++++|+.++.+++|+..+. ..+..+.+|...+..++|+
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 9999 9999999999999999999999888876664 579999999999999999875 5667889999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE----EeCCeEEEEEcCCCceee
Q 001248 912 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQLAIFETTKLECVK 987 (1114)
Q Consensus 912 ~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~----~~d~~i~iwd~~~~~~~~ 987 (1114)
+++++|++++.|++|++||+.+++....... ....+ ...|..++++|++..++. +.++.|++||........
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~ 235 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ-TFTQH---QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 235 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSE-EECCC---CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE
T ss_pred CCCCEEEEEecCcceeEEECCCCccccccee-eeccc---CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc
Confidence 9999999999999999999998654332222 12222 247899999998765443 257899999999888776
Q ss_pred eeecCCCCcCeeEEEECCCCCEEEEEE--cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEE
Q 001248 988 QWVPRESSAPITHATFSCDSQLVYACF--LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~s--~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
.. .|...+..++|+|++..+++++ .|+.|+|||+.+++.+..+. +|... |. +++|+| |+++|+|
T Consensus 236 ~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~~-V~--~l~~sp-dg~~l~S 301 (318)
T 4ggc_A 236 AV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSR-VL--SLTMSP-DGATVAS 301 (318)
T ss_dssp EE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSC-EE--EEEECT-TSSCEEE
T ss_pred cc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCCC-EE--EEEEcC-CCCEEEE
Confidence 65 3577899999999999988765 79999999999999999887 54443 55 899999 6899999
Q ss_pred EeCCCcEEEEeccCCC
Q 001248 1066 GLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1066 ~~~Dg~v~vW~i~~~~ 1081 (1114)
|+.||+|++||+.+.+
T Consensus 302 ~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADETLRLWRCFELD 317 (318)
T ss_dssp EETTTEEEEECCSCCC
T ss_pred EecCCeEEEEECCCCC
Confidence 9999999999998765
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.3e-29 Score=283.87 Aligned_cols=245 Identities=9% Similarity=0.008 Sum_probs=203.1
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC-e
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-L 434 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~ 434 (1114)
.|.+.|++++|+|+|++ |++|+.||.|+|||+.+++..... ..+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~~-l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGTE-EEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCCCCcE
Confidence 49999999999999995 899999999999999887621100 02457899999999999999 9
Q ss_pred EEEEeCCCeEEEEEc-cCCceeeeeEeecc--ccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC---------Ccce
Q 001248 435 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---------GAKQ 502 (1114)
Q Consensus 435 las~~~dg~i~iwd~-~~~~~~~~~~~l~~--h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~---------~~~~ 502 (1114)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| ++ ++++++.|+.|++||+.+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 88754 25778 999999999999 77 799999999999999998 8877
Q ss_pred eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC-CCCe--eeecCCCCeeEEEEEecCCCeEEeeecccceeE
Q 001248 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~--~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~ 579 (1114)
..+. |...|.+++|++ + .+++++.|+.|++||++. .... .....+... +.+
T Consensus 145 ~~~~-~~~~v~~~~~~~--~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---------------------i~~ 198 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--S--RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ---------------------IRD 198 (342)
T ss_dssp SSSS-SCCCEEEEEECS--S--EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSC---------------------EEE
T ss_pred eEEe-eCCceEEEEecC--C--cEEEEeCCCeEEEEECCccccccceeeecCCCCc---------------------eeE
Confidence 7777 899999999864 3 299999999999999987 4432 122233333 445
Q ss_pred EEecC-CCCEEEEEeCCCeEEEEECCCc------ceEEEeccCCC-------CCCcCeEEEcCCCCEEEEEeCCCcEEEE
Q 001248 580 VQFDT-TKNRFLAAGDDFSIKFWDMDSV------QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKIL 645 (1114)
Q Consensus 580 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~dg~i~iw 645 (1114)
++|+| +++++++++.||.|++|++... +....+..+.. ...|.+++|+|++++|++++.||.|++|
T Consensus 199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw 278 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence 55555 5568999999999999999887 77777776632 3479999999999999999999999999
Q ss_pred EccCC
Q 001248 646 ATSDG 650 (1114)
Q Consensus 646 d~~~~ 650 (1114)
|+.++
T Consensus 279 d~~~~ 283 (342)
T 1yfq_A 279 NLQTR 283 (342)
T ss_dssp ETTTT
T ss_pred cCccH
Confidence 99877
No 103
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=2.2e-29 Score=291.90 Aligned_cols=195 Identities=15% Similarity=0.291 Sum_probs=166.8
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
..+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd 199 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 199 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEE
Confidence 3457778998887 89999999999999999999988665 68899999999999 677 799999999999999
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe---eeecCCCCeeEEEEEecCCCeEEeee
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
+.+++.+.++.+|...|.+++|+ + .++++++.||.|++||+.+.... ..+..|...|.++.+
T Consensus 200 ~~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~----------- 264 (435)
T 1p22_A 200 VNTGEMLNTLIHHCEAVLHLRFN--N--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF----------- 264 (435)
T ss_dssp SSSCCEEEEECCCCSCEEEEECC--T--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-----------
T ss_pred CCCCcEEEEEcCCCCcEEEEEEc--C--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-----------
Confidence 99999999999999999999974 2 58999999999999999886654 344455555555554
Q ss_pred cccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+++++++++.||.|++||+.+++.+..+..+. ..+.++.+ ++.++++|+.||.|++||+.++
T Consensus 265 ------------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 265 ------------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK--RGIACLQY--RDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp ------------ETTEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred ------------CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC--CcEEEEEe--CCCEEEEEeCCCeEEEEECCCC
Confidence 34579999999999999999999999988664 46888888 5789999999999999998776
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=294.58 Aligned_cols=306 Identities=13% Similarity=0.139 Sum_probs=224.3
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcc-ccccCCCCCCC----------
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM-MTNDVTDSNPE---------- 818 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~-~~~~~~~~~~~---------- 818 (1114)
+...|.+++|+|+|++|++++.||.|+||++.......... .+.. ....+. +|.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~-------------~~~~~~~~~~~--~h~~~~~~~~~~~ 91 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS-------------RGEYNVYSTFQ--SHEPEFDYLKSLE 91 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC-------------CCCEEEEEEEE--CCCCEEEGGGTEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc-------------ccceeEecccc--ccccccccccccc
Confidence 67899999999999999999999999999987543110000 0000 011122 265
Q ss_pred --CCccEEEEeeCC--CEEEEEe-CCeEEEEEcCCCccc---------------------------------------cc
Q 001248 819 --EAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTM---------------------------------------AT 854 (1114)
Q Consensus 819 --~~v~~v~~s~d~--~~l~~~~-dg~i~iwd~~~~~~~---------------------------------------~~ 854 (1114)
..|.+++|+|++ .+|++++ |++|++||+.++... ..
T Consensus 92 ~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (447)
T 3dw8_B 92 IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI 171 (447)
T ss_dssp ECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred ccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence 889999999998 7888888 999999999764431 12
Q ss_pred -cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceEEE-------eecccccCeeEEEEcCCC-CEEEEEeCCC
Q 001248 855 -FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS-------KLKGHSKRITGLAFSHAL-NVLVSSGADS 924 (1114)
Q Consensus 855 -~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-~~~~~-------~l~~h~~~V~~l~~s~d~-~~l~s~s~D~ 924 (1114)
..+|...|.+++|+| ++++|++| .||.|++||+.+ ++.+. .+.+|...|++++|+|++ ++|++++.|+
T Consensus 172 ~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg 249 (447)
T 3dw8_B 172 FANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG 249 (447)
T ss_dssp ECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred eccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence 367999999999999 89999999 799999999994 44444 367899999999999998 9999999999
Q ss_pred cEEEEeCCCCccccccccccCCCCCC---------CCCCceEEEEccCCcEEEEEeCCeEEEEEcCC-CceeeeeecCCC
Q 001248 925 QLCVWSSDGWEKQKNRFLQIPTGRTP---------TAQSDTRVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRES 994 (1114)
Q Consensus 925 ~v~iwd~~~~~~~~~~~~~~~~~~~~---------~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~-~~~~~~~~~~~h 994 (1114)
+|++||+.+++.... ......++.. ....|.+++|+|+|++|+++.++.|++||+.+ ++.+..+. +|
T Consensus 250 ~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~--~~ 326 (447)
T 3dw8_B 250 TIRLCDMRASALCDR-HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ--VH 326 (447)
T ss_dssp CEEEEETTTCSSSCT-TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEE--SC
T ss_pred eEEEEECcCCccccc-eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceee--cc
Confidence 999999998653211 1222333321 00268999999999999997669999999997 88877776 44
Q ss_pred CcC---------------eeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCc------ccCC------C-----
Q 001248 995 SAP---------------ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA------YLPA------G----- 1042 (1114)
Q Consensus 995 ~~~---------------v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~------~~~~------~----- 1042 (1114)
... +..++|+|++++|++++.||.|++||+.+++.+....... .... +
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 321 3459999999999999999999999999998764221100 0000 0
Q ss_pred -----CCCCCccceEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1043 -----VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1043 -----~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
.....-..+.++|+| ++++|++++.++ +++|.-
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCceeEEEECC-CCCEEEEEecce-eeeecc
Confidence 000011234899999 689999888765 777763
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=286.59 Aligned_cols=255 Identities=16% Similarity=0.206 Sum_probs=208.0
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCc--ceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC-
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD- 431 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd- 431 (1114)
-+|.+.|++++|+|+|++ |++|+.||.|+|||+..+ +.+. .+.+|.+.|.+++|+|+
T Consensus 8 ~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~ 67 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPK 67 (379)
T ss_dssp EECCCCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCGG
T ss_pred cCCcccEEEEEEcCCCCE-EEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCCC
Confidence 349999999999999995 999999999999999843 3332 37789999999999987
Q ss_pred -CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCC--CCeeEEEEecCCCCEEEEeCCCCc--ceeEee
Q 001248 432 -GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIFE 506 (1114)
Q Consensus 432 -g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~ 506 (1114)
+++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ....+.
T Consensus 68 ~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 144 (379)
T 3jrp_A 68 FGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIID 144 (379)
T ss_dssp GCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEE
T ss_pred CCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEec
Confidence 999999999999999999998622 33367789999999999999 78 79999999999999999874 345677
Q ss_pred ccccCEEEEeeccCC-----------CceEEEEEecCCeEEEEEcCCCCCe----eeecCCCCeeEEEEEecCCCeEEee
Q 001248 507 GHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
+|...|.+++|++.. ++.++++++.|+.|++||+++.... ..+..|...|.+++|+|++.
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~----- 219 (379)
T 3jrp_A 145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL----- 219 (379)
T ss_dssp CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-----
T ss_pred CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC-----
Confidence 899999999998742 5689999999999999999876543 23444555555555555510
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcc---eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
.++++++++.||.|++||+.++. ....+....+...+.+++|+|++++|++++.||.|++|++.
T Consensus 220 -------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 220 -------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp -------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred -------------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 04579999999999999998865 33344443455679999999999999999999999999998
Q ss_pred CC
Q 001248 649 DG 650 (1114)
Q Consensus 649 ~~ 650 (1114)
.+
T Consensus 287 ~~ 288 (379)
T 3jrp_A 287 LE 288 (379)
T ss_dssp ET
T ss_pred CC
Confidence 65
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=1.2e-29 Score=290.88 Aligned_cols=253 Identities=15% Similarity=0.229 Sum_probs=201.2
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-CCCeEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGV 437 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las 437 (1114)
....+++++|+...++++|+.||.|+||++....... .....+.+|.+.|.+++|+| ++++|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s 99 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---------------KNVPLVCGHTAPVLDIAWCPHNDNVIAS 99 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------------TTCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------------CCCceEecCCCCEEEEEeCCCCCCEEEE
Confidence 3456799999988767778999999999996543221 01124789999999999999 9999999
Q ss_pred EeCCCeEEEEEccCCcee----eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe--eccccC
Q 001248 438 AYSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAP 511 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~h~~~ 511 (1114)
|+.||+|+|||+.++... .....+.+|...|.+++|+|+++. +|++++.|++|++||+.+++.+..+ .+|...
T Consensus 100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999999999999987321 223368899999999999999843 7999999999999999999999999 889999
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee-cCCCCe-eEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRW-CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
|.+++|++ ++.+|++++.|+.|++||+++......+ ..+... +..+. |+|++.++
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~l 235 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV---------------------FVSEGKIL 235 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEE---------------------ECSTTEEE
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEE---------------------EcCCCcEE
Confidence 99999876 5579999999999999999986665555 344332 44444 44555578
Q ss_pred EEE---eCCCeEEEEECCCcce-EEEeccCCCCCCcCeEEEcCCCCEEEE-EeCCCcEEEEEccCCc
Q 001248 590 LAA---GDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAV-STNDNGIKILATSDGI 651 (1114)
Q Consensus 590 ~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~~dg~i~iwd~~~~~ 651 (1114)
+++ +.|+.|++||+.+++. +..... .+...+.+++|+|++++|++ ++.||.|++|++.++.
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred EEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 888 6899999999988764 333322 22346899999999999975 5579999999998874
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=3.2e-29 Score=283.89 Aligned_cols=256 Identities=17% Similarity=0.202 Sum_probs=201.4
Q ss_pred CcceeEecc-CCCCceEEEEcCC---CCeEEEEEecCCcEEEEEcCC-cceeEEeeeeeeccCCCCcccccccccCCCCC
Q 001248 348 PKTVTRTLN-QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVS 422 (1114)
Q Consensus 348 ~~~~~~~~~-h~~~v~~v~~spd---g~~ll~tg~~dg~v~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 422 (1114)
+......+. |.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|...
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~ 88 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGP 88 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSC
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCC
Confidence 444445554 9999999999999 57 599999999999999997 444321 36789999
Q ss_pred eeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEe--cCCCCeeEEEEecCCCCEEEEeCCCCc
Q 001248 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF--SHPNKQLCVITCGDDKTIKVWDATNGA 500 (1114)
Q Consensus 423 V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~--s~d~~~~~l~s~~~d~~i~iwd~~~~~ 500 (1114)
|.+++|+|++++|++++.||.|++||+.+++.+. +.+|...|.+++| ++++. ++++++.|+.|++||+.+++
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence 9999999999999999999999999999987554 5679999999999 88888 79999999999999999999
Q ss_pred ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC--CCCeeEEEEEecCCCeEEeeeccccee
Q 001248 501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLG 578 (1114)
Q Consensus 501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~g~~~~~~~~~~~v~ 578 (1114)
.+..+..|. .+.++.+. . ..+++++.++.+++|+++.......... ....+..+.+.++...
T Consensus 163 ~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 226 (368)
T 3mmy_A 163 PMMVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN----------- 226 (368)
T ss_dssp CSEEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----------
T ss_pred EEEEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-----------
Confidence 999998664 56666653 2 4788999999999999987544332211 1223333333332220
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEECCCc---ceEEEeccCCCC----------CCcCeEEEcCCCCEEEEEeCCCcEEEE
Q 001248 579 VVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGL----------PASPRIRFNKDGCLLAVSTNDNGIKIL 645 (1114)
Q Consensus 579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~----------~~v~~~~~s~d~~~l~~~~~dg~i~iw 645 (1114)
....+++++.||.|++|++... ..+..+..+... ..|.+++|+|++++|++++.||.|++|
T Consensus 227 ------~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw 300 (368)
T 3mmy_A 227 ------KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW 300 (368)
T ss_dssp ------CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred ------CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence 0012999999999999999887 556666655321 158999999999999999999999999
Q ss_pred EccCC
Q 001248 646 ATSDG 650 (1114)
Q Consensus 646 d~~~~ 650 (1114)
|+.++
T Consensus 301 d~~~~ 305 (368)
T 3mmy_A 301 DKDAR 305 (368)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 99876
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=5.1e-29 Score=279.89 Aligned_cols=260 Identities=10% Similarity=0.130 Sum_probs=209.5
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC--C
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D 431 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp--d 431 (1114)
..+|.+.|++++|+|+|++ |++|+.||.|+|||+.++...... ...+.+|...|.+++|+| |
T Consensus 7 ~~gH~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRH-VATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp ECCCSSCEEEEEECSSSSE-EEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCGGG
T ss_pred CcccccceeEEEEcCCCCE-EEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCCCC
Confidence 3469999999999999995 999999999999999876432110 013678999999999999 6
Q ss_pred CCeEEEEeCCCeEEEEEccCCce------eeeeEeeccccCCeeEEEecCC--CCeeEEEEecCCCCEEEEeCCCCccee
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDE------VRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAKQY 503 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~------~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~~~ 503 (1114)
+++|++|+.||.|++||+.+++. ......+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++.+.
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTT
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhc
Confidence 99999999999999999988632 1334468899999999999999 88 79999999999999999888765
Q ss_pred Eee-------------ccccCEEEEeeccC-CCceEEEEEecCCeEEEEEcCCCCC--eeeecCCCCeeEEEEEecCCCe
Q 001248 504 IFE-------------GHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTR 567 (1114)
Q Consensus 504 ~~~-------------~h~~~v~~~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~ 567 (1114)
.+. +|...+.+++|++. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 543 68889999998775 1357999999999998887776544 3345556666666666666510
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCc-----------------------------------------
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV----------------------------------------- 606 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------------------- 606 (1114)
.+++|++++.||.|++||+.++
T Consensus 229 -----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 229 -----------------WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp -----------------SSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred -----------------cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence 0047999999999999998764
Q ss_pred -----ceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 607 -----QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 607 -----~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+.+..+..| ...|.+++|+|++++|++++.||.|++|++.++
T Consensus 292 ~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 292 SNLQVELLSEHDDH--NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp CSEEEEEEEEECTT--SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccccccEEEEEecc--cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 455555544 457999999999999999999999999999887
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.4e-29 Score=287.27 Aligned_cols=287 Identities=15% Similarity=0.138 Sum_probs=226.8
Q ss_pred EEEEEccCcceeee-cccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee-CCCE
Q 001248 755 SRLIFTNSGNAILA-LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSY 832 (1114)
Q Consensus 755 ~~l~~s~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~-d~~~ 832 (1114)
..++++|+...+++ ++.+|.|+||++....... ... ..+. +|...|.+++|+| ++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~------------------~~~-~~~~--~h~~~V~~~~~~p~~~~~ 96 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD------------------KNV-PLVC--GHTAPVLDIAWCPHNDNV 96 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC------------------TTC-CCBC--CCSSCEEEEEECTTCTTE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC------------------CCC-ceEe--cCCCCEEEEEeCCCCCCE
Confidence 35788888776554 6789999999975321100 000 0122 3899999999999 9999
Q ss_pred EEEEe-CCeEEEEEcCCC-------ccccccCCCCCCeEEEEEecCCC-cEEEEEeCCCcEEEEEcccceEEEee--ccc
Q 001248 833 VMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKL--KGH 901 (1114)
Q Consensus 833 l~~~~-dg~i~iwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~-~~la~g~~dg~v~iwd~~~~~~~~~l--~~h 901 (1114)
|++++ ||+|++||+.++ +.+..+.+|...|.+++|+| ++ ++|++|+.||.|++||+.+++.+..+ .+|
T Consensus 97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 175 (402)
T 2aq5_A 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175 (402)
T ss_dssp EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence 99999 999999999987 56778889999999999999 65 79999999999999999999999999 889
Q ss_pred ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccC-CCCCCCCCCceEEEEccCCcEEEEE----eCCeEE
Q 001248 902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP-TGRTPTAQSDTRVQFHQDQIHFLVV----HETQLA 976 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~fspdg~~l~~~----~d~~i~ 976 (1114)
...|++++|+|++++|++++.|++|++||+.+++.. ... .+|.. ..+..++|+|+|++|+++ .|+.|+
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV-----AEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE-----EEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEE
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee-----eeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEE
Confidence 999999999999999999999999999999985532 222 23332 247899999999999997 689999
Q ss_pred EEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEE-EcCCeEEEEEcCCCee-eEEeCCCcccCCCCCCCCccceEEE
Q 001248 977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIA 1054 (1114)
Q Consensus 977 iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-s~Dg~I~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~ 1054 (1114)
+||+.+++.........|...+.+++|+|++++|+++ +.||.|++||+.+++. +..+.. .. | ...+. +++
T Consensus 249 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~---~~--~-~~~v~--~~~ 320 (402)
T 2aq5_A 249 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM---FS--S-KESQR--GMG 320 (402)
T ss_dssp EEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE---EC--C-SSCCS--EEE
T ss_pred EEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc---cc--c-CCccc--ceE
Confidence 9999987763333323567889999999999999754 4799999999999884 444331 00 1 22255 899
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1055 AHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1055 ~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
|+| ++.++++ .|+.+++|++.+++
T Consensus 321 ~sp-~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 321 YMP-KRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp ECC-GGGSCGG--GTEEEEEEEEETTE
T ss_pred Eec-cccccee--cceeEEEEEcCCCc
Confidence 999 5677664 57899999999876
No 110
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-28 Score=280.35 Aligned_cols=252 Identities=12% Similarity=0.074 Sum_probs=208.1
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcC--CCccccccCCCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEEccc
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~la~g~~dg~v~iwd~~~ 891 (1114)
|...|.+++|+|++++|++++ ||.|++||+. +++.+..+.+|...|++++|++ + +++|++|+.||.|++||+.+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEEEEET
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEEcCC
Confidence 999999999999999999998 9999999998 6677788999999999999997 5 89999999999999999999
Q ss_pred ce--EEEeecccccCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc-----
Q 001248 892 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ----- 962 (1114)
Q Consensus 892 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp----- 962 (1114)
++ .+..+.+|...|++++|+|+ +.+|++++.|++|++||+......... ...+|. ..|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~---~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI---IIDAHA---IGVNSASWAPATIEE 162 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE---EEECCT---TCEEEEEECCCC---
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE---EecCCC---CceEEEEEcCccccc
Confidence 87 77888899999999999999 999999999999999999886432222 222333 4789999999
Q ss_pred --------CCcEEEE-EeCCeEEEEEcCCCceee--eeecCCCCcCeeEEEECCC---CCEEEEEEcCCeEEEEEcCCCe
Q 001248 963 --------DQIHFLV-VHETQLAIFETTKLECVK--QWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 963 --------dg~~l~~-~~d~~i~iwd~~~~~~~~--~~~~~~h~~~v~~l~~s~d---g~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
++.+|++ +.|+.|++||+.++.... .....+|...|++++|+|+ +++|++++.||.|++||+.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 6999998 589999999998775432 2233488999999999999 8999999999999999999874
Q ss_pred eeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1029 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
........ ...+| ...+. +++|+| ++++|++++.||.|++|++..+.
T Consensus 243 ~~~~~~~~--~~~~~-~~~v~--~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 243 GPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp SCCEEEES--SSSCC-SSCEE--EEEECS-SSCCEEEEESSSSEEEEEEEETT
T ss_pred ccceeeee--ccccC-CCcEE--EEEEcC-CCCEEEEecCCCcEEEEeCCCCC
Confidence 22111100 11111 22244 899999 68999999999999999998643
No 111
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.8e-27 Score=276.28 Aligned_cols=320 Identities=15% Similarity=0.182 Sum_probs=236.5
Q ss_pred CeeEEE---EcCCCCeEEEE--------------eCCCeEEEEEcc--CCceeeeeEeeccccCCeeEEEecCCCCeeEE
Q 001248 422 SVNRVI---WSPDGSLFGVA--------------YSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482 (1114)
Q Consensus 422 ~V~~l~---~spdg~~las~--------------~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l 482 (1114)
.+..++ |+|+++.++.. +.++.+.||.++ ++. ......+..+ ..+.+++|+|++. ++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~ 137 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LA 137 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EE
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EE
Confidence 455556 66666555443 333433555543 342 2222244444 4567999999555 78
Q ss_pred EEecCCCCEEEEeCCCCccee-----EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeE
Q 001248 483 ITCGDDKTIKVWDATNGAKQY-----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCT 557 (1114)
Q Consensus 483 ~s~~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 557 (1114)
++++.++.|++||+.+++.+. .+.+|...|.+++|+ +++.++++++.|+.|++||+++.+....+..+...+.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP--EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG--GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc--CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 888999999999999998877 455788999999984 4568999999999999999998777777666666666
Q ss_pred EEEEecCCCeEEeeecccceeEEEecCCCCEEE-EEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEE
Q 001248 558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS 636 (1114)
Q Consensus 558 ~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 636 (1114)
+++|+|+++ .++ +++.++.|++||+.+++.+..+..+. .+.+++|+|+|++++++
T Consensus 216 ~~~~~~~~~---------------------~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 216 ILLYDPIRD---------------------LVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTT---------------------EEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEE
T ss_pred EEEEcCCCC---------------------EEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEE
Confidence 666666665 554 45589999999999999888876543 47899999999999888
Q ss_pred e--------CCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCc
Q 001248 637 T--------NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV 708 (1114)
Q Consensus 637 ~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1114)
+ .||.|++||+.+++ ....+
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~-~~~~~--------------------------------------------------- 299 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEK-LIDTI--------------------------------------------------- 299 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTE-EEEEE---------------------------------------------------
T ss_pred ECCCCccccCCCeEEEEECCCCc-EEeec---------------------------------------------------
Confidence 7 36667777665441 11000
Q ss_pred cccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCC
Q 001248 709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788 (1114)
Q Consensus 709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 788 (1114)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEE-e-CCeEEEEEcCCCccccccCCCCCCeEEEE
Q 001248 789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLA 866 (1114)
Q Consensus 789 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~ 866 (1114)
.+...+.+++|+|+++++++. + ++.|++||+.+++....+. +...+.+++
T Consensus 300 ---------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~ 351 (433)
T 3bws_A 300 ---------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA 351 (433)
T ss_dssp ---------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred ---------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence 012234567777777655443 4 7889999988887777665 567799999
Q ss_pred EecCCCcEEEEEeC---------------CCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeC-CCcEEEEe
Q 001248 867 FHPQDNNIIAIGMD---------------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWS 930 (1114)
Q Consensus 867 ~sp~d~~~la~g~~---------------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D~~v~iwd 930 (1114)
|+| ++++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|||++|++++. |++|++|+
T Consensus 352 ~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 352 LSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp ECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred EcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 999 8888888776 579999999999988888764 57999999999999998875 99999999
Q ss_pred CCC
Q 001248 931 SDG 933 (1114)
Q Consensus 931 ~~~ 933 (1114)
++.
T Consensus 430 ~~~ 432 (433)
T 3bws_A 430 RDG 432 (433)
T ss_dssp ETT
T ss_pred ecC
Confidence 874
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=4e-28 Score=280.47 Aligned_cols=267 Identities=13% Similarity=0.227 Sum_probs=212.1
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
......|.+.|++++|+|++..+||+|+.||.|+|||+.+...... ..........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 3566779999999999998555799999999999999986211000 0000001114678999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEEccCCce----eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC---cce
Q 001248 431 DGS-LFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQ 502 (1114)
Q Consensus 431 dg~-~las~~~dg~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~ 502 (1114)
+++ +|++|+.||.|++||+.++.. +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 999999999999999987432 2223467789999999999995444 7999999999999999987 577
Q ss_pred eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
..+..|...|.+++|++... .++++|+.||.|++||++.. .....+..|...|.+++|+|++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~--------------- 334 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE--------------- 334 (430)
T ss_dssp EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT---------------
T ss_pred eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC---------------
Confidence 88889999999999976542 47999999999999999974 44556666777777777777664
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCC--------------cceEEEeccCCCCCCcCeEEEcCCCC-EEEEEeCCCcEEEEE
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDS--------------VQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILA 646 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~dg~i~iwd 646 (1114)
.++++++.|+.|++||+.. .+.+..+..| ...|.+++|+|++. +|++++.||.|++|+
T Consensus 335 -----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 335 -----TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp -----TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred -----CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 3588999999999999976 2455555544 45799999999999 999999999999999
Q ss_pred ccCC
Q 001248 647 TSDG 650 (1114)
Q Consensus 647 ~~~~ 650 (1114)
+...
T Consensus 408 ~~~~ 411 (430)
T 2xyi_A 408 MAEN 411 (430)
T ss_dssp ECHH
T ss_pred cccc
Confidence 8754
No 113
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-28 Score=303.39 Aligned_cols=257 Identities=16% Similarity=0.207 Sum_probs=206.1
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC--C
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--G 432 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 432 (1114)
.+|.+.|++++|+|+|++ |++|+.||.|+|||+.++..... ..+.+|.+.|.+++|+|+ +
T Consensus 6 ~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~~~~~ 67 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAHPKFG 67 (753)
T ss_dssp --CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECCTTSC
T ss_pred ccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecCCCCC
Confidence 359999999999999995 99999999999999984432211 147889999999999998 9
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCC--CCeeEEEEecCCCCEEEEeCCCCc--ceeEeecc
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIFEGH 508 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h 508 (1114)
++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++|+.||+|++||+.++. ....+.+|
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence 9999999999999999998762 233367889999999999999 88 79999999999999998873 44567889
Q ss_pred ccCEEEEeeccCC-----------CceEEEEEecCCeEEEEEcCCCCCe----eeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 509 EAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 509 ~~~v~~~~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
...|.+++|++.. ++.++++|+.||.|++||+++.... ..+..|...|.+++|+|++.
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~------- 217 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL------- 217 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-------
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC-------
Confidence 9999999998742 4689999999999999999876432 23444555555555555410
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceE---EEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.++++++++.||.|++||+.++... .......+...|.+++|+|+|+++++++.||.|++|++.++
T Consensus 218 -----------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 218 -----------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp -----------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred -----------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 0457999999999999999886421 12222334567999999999999999999999999999865
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.6e-27 Score=249.95 Aligned_cols=293 Identities=15% Similarity=0.129 Sum_probs=209.1
Q ss_pred eeEEEec-CCCCeeEEEEecCCCCEEEEeCCCC---cceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC
Q 001248 468 VNDIAFS-HPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL 543 (1114)
Q Consensus 468 V~~v~~s-~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 543 (1114)
+.++-|- +..+...+++++ ..+|++|+..++ ++++++..|..+|..+.+.++..+-+.++-+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence 5666664 344555567776 468999999999 8899999999999999987765433333322
Q ss_pred CCeeeecCCCCeeEEEEEecC----CCeEEeeecccceeEEEecCCCCEEEEEe--CCCeEEEEEC-CCcceEEEeccCC
Q 001248 544 GSRVDYEAPGRWCTTMAYSAD----GTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSIKFWDM-DSVQLLTSIDADG 616 (1114)
Q Consensus 544 ~~~~~~~~~~~~v~~~~~s~~----g~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~ 616 (1114)
..+...|.+++++|| +..+..+.+. +....+ ++++.+.+++ .|+.|++|++ .+|+.+..+..+.
T Consensus 108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 108 ------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp ------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred ------cccccceEEEEECCCccccccEEEeCCCe--EEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 123446789999999 7777776654 333444 4555555533 5999999999 4588888887775
Q ss_pred CCCCcCeEEEcC---CCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccc
Q 001248 617 GLPASPRIRFNK---DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD 693 (1114)
Q Consensus 617 ~~~~v~~~~~s~---d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1114)
. .+..++|++ ++.+|++++.|++|+|||+.++ +.++.+.+|..
T Consensus 179 ~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~------------------------------- 224 (356)
T 2w18_A 179 P--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS------------------------------- 224 (356)
T ss_dssp C--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC--------------------------------
T ss_pred C--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-------------------------------
Confidence 4 688899999 7899999999999999999998 55555543211
Q ss_pred ccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCc
Q 001248 694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA 773 (1114)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg 773 (1114)
+...+.+++|+|+|..+++++.+.
T Consensus 225 --------------------------------------------------------~v~~v~~vafSpdG~~lvs~s~~~ 248 (356)
T 2w18_A 225 --------------------------------------------------------YQASVCHKAYSEMGLLFIVLSHPC 248 (356)
T ss_dssp ----------------------------------------------------------CCCEEEEEEETTEEEEEEC---
T ss_pred --------------------------------------------------------ceeeeEEEEECCCCCEEEEeccCC
Confidence 223567889999998777665431
Q ss_pred eEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccc
Q 001248 774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM 852 (1114)
Q Consensus 774 ~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~ 852 (1114)
. + ..+++|+ |++|++||..+++.+
T Consensus 249 ~--~-----------------------------------------------------w~laSGs~D~tIklWd~~tgk~l 273 (356)
T 2w18_A 249 A--K-----------------------------------------------------ESESLRSPVFQLIVINPKTTLSV 273 (356)
T ss_dssp ----------------------------------------------------------------CCEEEEEEETTTTEEE
T ss_pred C--c-----------------------------------------------------ceeeccCCCcEEEEEECCCCEEE
Confidence 1 1 1356777 899999999998877
Q ss_pred ccc-----CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee-EEEEcCCCCEEEEEeCCCcE
Q 001248 853 ATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQL 926 (1114)
Q Consensus 853 ~~~-----~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~D~~v 926 (1114)
..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|+||+.|++|
T Consensus 274 ~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 274 GVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp EEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred EEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 654 356555444433 467999999999999999999999999999988766 58999999999999999999
Q ss_pred EEEeC
Q 001248 927 CVWSS 931 (1114)
Q Consensus 927 ~iwd~ 931 (1114)
+|||+
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99985
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.2e-27 Score=274.96 Aligned_cols=258 Identities=16% Similarity=0.079 Sum_probs=201.1
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcc---eeEEeeeeeeccCCC---------------------------
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE---RLVLRNFKVWDLGAC--------------------------- 407 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~---~~~~~~~~~~d~~~~--------------------------- 407 (1114)
..++.|++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 4 ~~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (450)
T 2vdu_B 4 IHPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKL 76 (450)
T ss_dssp ECCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC----------------------------
T ss_pred cccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhcccccccccccccc
Confidence 35789999999999 46655 57899999999998 4332 211000
Q ss_pred -------------CcccccccccCCCCCeeEEEEcCCCCeE-EEEeCCCeEEEEEcc--CCceeeeeEeeccccCCeeEE
Q 001248 408 -------------SMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDI 471 (1114)
Q Consensus 408 -------------~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~dg~i~iwd~~--~~~~~~~~~~l~~h~~~V~~v 471 (1114)
..........+|.+.|.+++|+|+|++| ++|+.||.|+|||+. +++.+... ....|...|.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~ 155 (450)
T 2vdu_B 77 KSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAI 155 (450)
T ss_dssp -----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEE
T ss_pred ccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEE
Confidence 0000111234677789999999999996 889999999999999 77766532 123677899999
Q ss_pred EecCCCCeeEEEEecCCCCEEEEeCCCCccee----EeeccccCEEEEeeccC-CCceEEEEEecCCeEEEEEcCCCCCe
Q 001248 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGSR 546 (1114)
Q Consensus 472 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~ 546 (1114)
+|+|+++ +|++|+.|+.|++|++.+++... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.+....
T Consensus 156 ~~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 156 SIAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp EECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred EEcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 9999999 79999999999999999887654 78899999999998775 22589999999999999999987766
Q ss_pred ee-ecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccC----------
Q 001248 547 VD-YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD---------- 615 (1114)
Q Consensus 547 ~~-~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------- 615 (1114)
.. +..|...|.+++|+ ++ ++|++++.|+.|++||+.+++.+..+..+
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~---------------------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 291 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KD---------------------YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQ 291 (450)
T ss_dssp EEECCCCSSCEEEEEEC-ST---------------------TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTT
T ss_pred eeeecCCCCceEEEEEC-CC---------------------CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhc
Confidence 55 44566666666665 55 47999999999999999999988887632
Q ss_pred -------------CCCCCcCeEEEcCCCCEEEEEe-CCCcEEEEEc
Q 001248 616 -------------GGLPASPRIRFNKDGCLLAVST-NDNGIKILAT 647 (1114)
Q Consensus 616 -------------~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iwd~ 647 (1114)
.....+.+++|+|++++|++++ .++.|++|++
T Consensus 292 ~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 292 HLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 1123578999999999999998 8999999998
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.4e-26 Score=264.77 Aligned_cols=227 Identities=15% Similarity=0.125 Sum_probs=179.0
Q ss_pred CeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE-EEEeCCCeEEEEEc
Q 001248 371 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSY 449 (1114)
Q Consensus 371 ~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~dg~i~iwd~ 449 (1114)
++++++++.|+.|++||+.+++.+.. +..|. .+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35799999999999999999887652 44454 58999999999987 56668999999999
Q ss_pred cCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEE-EE
Q 001248 450 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-FS 528 (1114)
Q Consensus 450 ~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s 528 (1114)
.+++.+. .+..|. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..| ..+.+++|+++ ++.+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d--g~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD--GKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT--SSEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC--CCEEEEE
Confidence 9988665 444444 8999999999995 4467778899999999999988888754 56888898654 4555 78
Q ss_pred EecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE-EEEeCCCeEEEEECCCcc
Q 001248 529 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQ 607 (1114)
Q Consensus 529 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~ 607 (1114)
++.|+.|++||+.+.+....+..+ ..+..++ |+|+++++ ++++.++.|++||+.+++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~---------------------~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIA---------------------VTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEE---------------------ECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEE---------------------ECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 888999999999876555444332 2234444 45555456 567789999999999998
Q ss_pred eEEEeccCCCCCCcCeEEEcCCCCEEEEEe---CCCcEEEEEccCC
Q 001248 608 LLTSIDADGGLPASPRIRFNKDGCLLAVST---NDNGIKILATSDG 650 (1114)
Q Consensus 608 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---~dg~i~iwd~~~~ 650 (1114)
.+..+..+. .+.+++|+|+++++++++ .++.|++||+.++
T Consensus 192 ~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 192 VIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp EEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred EEEEEecCC---CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 888776542 578999999999999888 6899999998776
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.7e-26 Score=263.94 Aligned_cols=329 Identities=8% Similarity=0.086 Sum_probs=240.1
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
.++++++.|+.|++||+.+++.+. .+..|. .+.+++|+|+++. ++++++.|++|++||+.+++.+..+..+. .+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~~-~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v 76 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA---TIPVGS-NPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SP 76 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE---EeecCC-CcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Cc
Confidence 467888899999999999988665 455554 5899999999995 45788899999999999999998888665 89
Q ss_pred EEEeeccCCCceEE-EEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE-E
Q 001248 513 YSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-L 590 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l-~ 590 (1114)
.+++|+++ ++++ ++++.++.|++||+.+.+....+..+ ..+.+++ |+|+++.+ +
T Consensus 77 ~~~~~spd--g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~---------------------~s~dg~~l~~ 132 (391)
T 1l0q_A 77 QGVAVSPD--GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLA---------------------LSPDGKKLYV 132 (391)
T ss_dssp EEEEECTT--SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEE---------------------ECTTSSEEEE
T ss_pred cceEECCC--CCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEE---------------------ECCCCCEEEE
Confidence 99998654 4566 45556799999999876555444332 2344444 45555556 6
Q ss_pred EEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEE-EEEeCCCcEEEEEccCCccceeeccccccccccCCC
Q 001248 591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE 669 (1114)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 669 (1114)
+++.++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.++ +....+.
T Consensus 133 ~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~----------- 197 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK----------- 197 (391)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-----------
T ss_pred EeCCCCEEEEEECCCCcEEEEEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-----------
Confidence 77789999999999999888887653 36899999999887 56778899999998765 1111100
Q ss_pred CCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccc
Q 001248 670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749 (1114)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 749 (1114)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
+...+.+++|+|+
T Consensus 198 -------------------------------------------------------------------~~~~~~~~~~~~~ 210 (391)
T 1l0q_A 198 -------------------------------------------------------------------VEAAPSGIAVNPE 210 (391)
T ss_dssp -------------------------------------------------------------------CSSEEEEEEECTT
T ss_pred -------------------------------------------------------------------cCCCccceEECCC
Confidence 1223445666667
Q ss_pred CCEEEEEe----CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEE-EEEeCCCcEEEEEcccceEEEeecccccC
Q 001248 830 DSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLKGHSKR 904 (1114)
Q Consensus 830 ~~~l~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-a~g~~dg~v~iwd~~~~~~~~~l~~h~~~ 904 (1114)
++++++++ ++.|++||+.+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+
T Consensus 211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 76666554 5788889988888777777654 588999999 77665 67789999999999999998888766544
Q ss_pred ee---EEEEcC------------CC----------CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEE
Q 001248 905 IT---GLAFSH------------AL----------NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959 (1114)
Q Consensus 905 V~---~l~~s~------------d~----------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 959 (1114)
.. .+.+.| +. ..+.+.+.|.++++|++..+.... . ......
T Consensus 289 ~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~------~--------~~~~~~ 354 (391)
T 1l0q_A 289 YASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK------K--------QNPTHT 354 (391)
T ss_dssp ECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC------S--------SSCEEC
T ss_pred CccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC------c--------CCCeEE
Confidence 21 122222 11 346667788999999998754311 0 123467
Q ss_pred EccCCcEEEE
Q 001248 960 FHQDQIHFLV 969 (1114)
Q Consensus 960 fspdg~~l~~ 969 (1114)
|+++|.|.+.
T Consensus 355 ~~~~g~y~~~ 364 (391)
T 1l0q_A 355 YSETGIYTVR 364 (391)
T ss_dssp CSSCEEEEEE
T ss_pred eCCCceEEEE
Confidence 9999998876
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.6e-27 Score=251.58 Aligned_cols=277 Identities=11% Similarity=0.146 Sum_probs=205.4
Q ss_pred cccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCcccc
Q 001248 715 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS 794 (1114)
Q Consensus 715 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 794 (1114)
+..+.......|++|+..+...-.....+ ++|..+|..+.+.||...|++..-..
T Consensus 54 ~~~~~~~~~~~v~lw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~--------------------- 108 (356)
T 2w18_A 54 EPCIITACEDVVSLWKALDAWQWEKLYTW----HFAEVPVLQIVPVPDVYNLVCVALGN--------------------- 108 (356)
T ss_dssp EEEEEEEESSEEEEEEESSSSBEEEEEEE----ECCSSCEEEECCCTTCCSCEEEEECS---------------------
T ss_pred ccEEEEeccceEEEcccCCCccceeeEEE----eccCceeEEEEEcCcccceeeeeecc---------------------
Confidence 34455556689999999885332333333 34778999999999877666543321
Q ss_pred ccccccCCCCCccccccCCCCCCCCCccEEEEeeC----CCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecC
Q 001248 795 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN----DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 870 (1114)
Q Consensus 795 ~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d----~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~ 870 (1114)
-+...|.+++++|| ++++++++ ..+++|++ +
T Consensus 109 ---------------------~~~~~v~sla~spd~~~~~~~l~s~g-~~~~v~~l----------------------~- 143 (356)
T 2w18_A 109 ---------------------LEIREIRALFCSSDDESEKQVLLKSG-NIKAVLGL----------------------T- 143 (356)
T ss_dssp ---------------------SSEEEEEEECC------CCEEEEEEE-EEEEEEEE----------------------T-
T ss_pred ---------------------ccccceEEEEECCCccccccEEEeCC-CeEEEEec----------------------C-
Confidence 14567899999999 99999877 34777854 2
Q ss_pred CCcEEEEEe--CCCcEEEEEc-ccceEEEeecccccCeeEEEEcC---CCCEEEEEeCCCcEEEEeCCCCcccccccccc
Q 001248 871 DNNIIAIGM--DDSSIQIYNV-RVDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI 944 (1114)
Q Consensus 871 d~~~la~g~--~dg~v~iwd~-~~~~~~~~l~~h~~~V~~l~~s~---d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 944 (1114)
+++++.+++ .|+.|++|++ .+|+.+..+.+|...++.++|++ ++.+|||++.|++|+|||+.+++. +..
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-----l~t 218 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-----LKK 218 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-----EEE
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-----EEE
Confidence 455666543 5888888888 44777888889999999999999 789999999999999999999764 233
Q ss_pred CCCCCCCCCCceEEEEccCCcEEEE-------------EeCCeEEEEEcCCCceeeeee---cCCCCcCeeEEEECCCCC
Q 001248 945 PTGRTPTAQSDTRVQFHQDQIHFLV-------------VHETQLAIFETTKLECVKQWV---PRESSAPITHATFSCDSQ 1008 (1114)
Q Consensus 945 ~~~~~~~~~~i~~v~fspdg~~l~~-------------~~d~~i~iwd~~~~~~~~~~~---~~~h~~~v~~l~~s~dg~ 1008 (1114)
+.++......+.+++|+|||+++++ +.|++|++||..+++++..+. ..+|...+.+..++ +.
T Consensus 219 L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~ 296 (356)
T 2w18_A 219 MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH 296 (356)
T ss_dssp EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT
T ss_pred EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC
Confidence 3333222246788999999998743 367899999999999877653 34776666555554 88
Q ss_pred EEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1009 LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1009 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
++++++.|++|+|||+.+++.+.++. +|....+. .++|+| |+++|++|+.|++|+|||+.
T Consensus 297 ~lASgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~vafSP-DG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 297 CAAAILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FVKWSG-TDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EEEECS-SSSEEEEECTTSCEEEEEEC
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EEEECC-CCCEEEEEECCCcEEEecCC
Confidence 99999999999999999999999887 44444343 589999 78999999999999999963
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1e-26 Score=260.78 Aligned_cols=299 Identities=14% Similarity=0.203 Sum_probs=209.4
Q ss_pred ccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEe
Q 001248 416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495 (1114)
Q Consensus 416 ~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd 495 (1114)
...|.+.|.+++|||||++||+|+.++ ++|||+.+++... . .+...+..++|.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 578999999999999999999998776 7899998865443 2 22235888999998884 446788889999999
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
+.+++++..+. |...|.++++++ + .++.+ .|+.|++||+.+. +....+.. ....
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~---------------- 142 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGV---------------- 142 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEE----------------
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCce----------------
Confidence 99999999887 677999999754 2 34433 4889999999876 44333322 1122
Q ss_pred cceeEEEecCCCCEEEE--EeCCCeEEEEECCCcc----------------eEEEeccCCCCCCcCeEEEcCCCCEEEEE
Q 001248 575 RSLGVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQ----------------LLTSIDADGGLPASPRIRFNKDGCLLAVS 636 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 636 (1114)
+++++ +++++ |+.+|.|++||+.++. .+..+..| ...|.+++|+|+|++|+++
T Consensus 143 -----~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 143 -----CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp -----EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEE
T ss_pred -----EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEE
Confidence 22333 34555 5789999999998865 15666655 5589999999999999999
Q ss_pred eCCCc-EEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCc
Q 001248 637 TNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK 715 (1114)
Q Consensus 637 ~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1114)
+.||+ |++||+.++ +.+..+..
T Consensus 214 s~d~~~v~iwd~~~~-~~~~~~~~-------------------------------------------------------- 236 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDG-VLVREFRR-------------------------------------------------------- 236 (355)
T ss_dssp ETTCSEEEEEETTTC-CEEEEEEC--------------------------------------------------------
T ss_pred eCCCCEEEEEECCCC-cEEEEEEc--------------------------------------------------------
Confidence 99998 999999887 33332210
Q ss_pred ccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccc--
Q 001248 716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA-- 793 (1114)
Q Consensus 716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-- 793 (1114)
..|...|.+++|+|++++|++++.|+.|++|++.............
T Consensus 237 --------------------------------g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 237 --------------------------------GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp --------------------------------TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred --------------------------------CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 0156789999999999999999999999999987543211100000
Q ss_pred --cccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCc
Q 001248 794 --SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK 850 (1114)
Q Consensus 794 --~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~ 850 (1114)
...-..|.... . .+. .........++|++|+++|++++ ||.+++|++..+.
T Consensus 285 ~~~~~~~~~~~~~----~-~~~-~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 285 NMKYFQSEWSLCN----F-KLS-VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp ECCCCCCSSCSEE----E-ECC-CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred eccccccccceeE----E-Eec-cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 00000111100 0 011 01233457799999999999998 9999999987543
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-27 Score=272.98 Aligned_cols=246 Identities=9% Similarity=0.041 Sum_probs=200.5
Q ss_pred CCCCccEEEEeeCCCEE-EEEe-CCeEEEEEcC--CCccccccC--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcc
Q 001248 817 PEEAVPCFALSKNDSYV-MSAS-GGKISLFNMM--TFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l-~~~~-dg~i~iwd~~--~~~~~~~~~--~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~ 890 (1114)
|...|.+++|+|++++| ++++ ||.|++||+. +++.+..+. .+...|.+++|+| ++++|++|+.||.|++|++.
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecC
Confidence 66689999999999996 7887 8999999999 888887775 5678899999999 89999999999999999998
Q ss_pred cceEEE----eecccccCeeEEEEcCC---CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 891 VDEVKS----KLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 891 ~~~~~~----~l~~h~~~V~~l~~s~d---~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
+++... .+.+|...|++++|+|+ +++|++++.|++|++||+.+++... ....+|. ..|.+++|+ +
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----~~~~~h~---~~v~~~~~s-d 251 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD----KWLFGHK---HFVSSICCG-K 251 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE----EECCCCS---SCEEEEEEC-S
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee----eeecCCC---CceEEEEEC-C
Confidence 876544 78899999999999999 9999999999999999998754321 1233444 479999999 9
Q ss_pred CcEEEE-EeCCeEEEEEcCCCceeeeeecC-----------------------CCCcCeeEEEECCCCCEEEEEE-cCCe
Q 001248 964 QIHFLV-VHETQLAIFETTKLECVKQWVPR-----------------------ESSAPITHATFSCDSQLVYACF-LDAT 1018 (1114)
Q Consensus 964 g~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-----------------------~h~~~v~~l~~s~dg~~l~s~s-~Dg~ 1018 (1114)
|++|++ +.|+.|++||+.+++++..+... .+...|.+++|+|++++|++++ .|+.
T Consensus 252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~ 331 (450)
T 2vdu_B 252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC 331 (450)
T ss_dssp TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence 999999 68999999999999988777521 2245799999999999999999 8999
Q ss_pred EEEEEc--CCC---eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeC-------CCcEEEEeccCCCCcc
Q 001248 1019 VCVFSA--ANL---KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-------DGGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1019 I~vwd~--~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~-------Dg~v~vW~i~~~~~~~ 1084 (1114)
|+||++ .++ +.+..+. ++ -.+.+++|+| + .++++.+. +..|.+|.+....+.|
T Consensus 332 i~iw~~~~~~~~~l~~~~~~~-------~~----~~v~~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~ 396 (450)
T 2vdu_B 332 IIILEMSEKQKGDLALKQIIT-------FP----YNVISLSAHN-D-EFQVTLDNKESSGVQKNFAKFIEYNLNENSF 396 (450)
T ss_dssp EEEEEECSSSTTCEEEEEEEE-------CS----SCEEEEEEET-T-EEEEEECCTTCCSSCCCSEEEEEEETTTTEE
T ss_pred EEEEEeccCCCCceeeccEec-------cC----CceEEEEecC-C-cEEEEEecccCCCCCCcceEEEEEEcCCCeE
Confidence 999999 555 5555554 21 1234899998 4 45555433 5568999887665555
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-27 Score=266.20 Aligned_cols=198 Identities=12% Similarity=0.071 Sum_probs=158.3
Q ss_pred CCCCccEEEEee--CCCEEEEEe-CCeEEEEEcCCCccccccC-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 817 PEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 817 ~~~~v~~v~~s~--d~~~l~~~~-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
|...|.+++++| +++++++++ ||+|++||+.+++...... .+...+++++|+| ++.+||+|+.||.|++||+.++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence 667899999999 999999999 9999999999988876653 3455799999999 9999999999999999999999
Q ss_pred eEE-Eeecc-cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCc--eEEEEccCCcEEE
Q 001248 893 EVK-SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD--TRVQFHQDQIHFL 968 (1114)
Q Consensus 893 ~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i--~~v~fspdg~~l~ 968 (1114)
+.+ ..+.+ |.+.|++++|+|++.+|++++ |++|++||+.+.+... .+.....+.. .+ .+++|+|+|++|+
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL--AYPTYTIPEF---KTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEE
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce--eecccccccc---cccceEEEECCCCCEEE
Confidence 877 78888 999999999999999999999 4599999999854321 1111111211 22 4699999999999
Q ss_pred E-Ee-CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECC---CCCEEEEEEcCCeEEEEEcCCC
Q 001248 969 V-VH-ETQLAIFETTKLECVKQWVPRESSAPITHATFSC---DSQLVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 969 ~-~~-d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~---dg~~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
+ +. |+.+++|+..+....... .++..++|++ +.+.|++++.||.+.++-....
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred EecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence 9 44 999999999766543222 4678888998 9999999999999998865443
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=6e-28 Score=274.92 Aligned_cols=267 Identities=10% Similarity=-0.022 Sum_probs=186.5
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC-----
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP----- 430 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp----- 430 (1114)
.|...+....+++++. +||+|+.|++|+|||+.+++......+ ..+.+|.+.|.+|+|+|
T Consensus 87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEEECTT
T ss_pred ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEccccccc
Confidence 3555555566666676 599999999999999998876543222 15789999999999998
Q ss_pred ---CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE---
Q 001248 431 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--- 504 (1114)
Q Consensus 431 ---dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~--- 504 (1114)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++|+.|++|++||+.+++....
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence 89999999999999999999877555 56688999999999999865 699999999999999988764432
Q ss_pred ----------------------eeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEe
Q 001248 505 ----------------------FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 562 (1114)
Q Consensus 505 ----------------------~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 562 (1114)
..+|...+.++.|+ .+++..+++++.|+++++||+........+..+...+..+.+.
T Consensus 228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ---CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred cCCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 23577788888875 3577899999999999999999887777777777777777777
Q ss_pred cCCCeEEeeecccceeEEEecCCCC-EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCc
Q 001248 563 ADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG 641 (1114)
Q Consensus 563 ~~g~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~ 641 (1114)
++++... .....+..+.+.+.++ ++++|+.||.|++||..+++....+..+. ..|.+++|+|||++|++++.+|
T Consensus 307 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G- 381 (393)
T 4gq1_A 307 PNVQGIS--LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS- 381 (393)
T ss_dssp CSEEEEC--SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE-
T ss_pred ccccccc--ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-
Confidence 7754221 1122233333444444 55667889999999999998888776654 4799999999999999998765
Q ss_pred EEEEEc
Q 001248 642 IKILAT 647 (1114)
Q Consensus 642 i~iwd~ 647 (1114)
+.+|.+
T Consensus 382 v~lvrL 387 (393)
T 4gq1_A 382 VLLTRL 387 (393)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 556654
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=2.1e-27 Score=270.38 Aligned_cols=351 Identities=13% Similarity=0.108 Sum_probs=213.2
Q ss_pred ccCCCCceEEEE---cCCCCeEEEEEecCCcEEEEEcCCcce-----eEEeeeeeeccCCCCc-----ccccccccCCCC
Q 001248 355 LNQGSSPMSMDF---HPVQQTLLLVGTNVGDIGLWEVGSRER-----LVLRNFKVWDLGACSM-----PLQAALVKDPGV 421 (1114)
Q Consensus 355 ~~h~~~v~~v~~---spdg~~ll~tg~~dg~v~iwd~~~~~~-----~~~~~~~~~d~~~~~~-----~~~~~~~~~h~~ 421 (1114)
+.-+....++.| +|++..++++| .++.|.+|+...... ........++...... +........|..
T Consensus 12 lpl~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (393)
T 4gq1_A 12 LPLNVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDG 90 (393)
T ss_dssp CCTTCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----
T ss_pred ecCCCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCC
Confidence 334455667777 45666556655 588899998643211 1111122222111100 001112344555
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceee--eeEeeccccCCeeEEEecC--------CCCeeEEEEecCCCCE
Q 001248 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSH--------PNKQLCVITCGDDKTI 491 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~--------d~~~~~l~s~~~d~~i 491 (1114)
.+....+++++.+||+++.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv 168 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTL 168 (393)
T ss_dssp ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEE
T ss_pred CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeE
Confidence 66666777788999999999999999999886543 2335789999999999998 777 89999999999
Q ss_pred EEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee
Q 001248 492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG 571 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~ 571 (1114)
+|||+.++.++..+.+|...|.+++|+|.. ..+|++++.|++|++||+++.........+.......
T Consensus 169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~------------ 235 (393)
T 4gq1_A 169 IIWRLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW------------ 235 (393)
T ss_dssp EEEEEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCC------------
T ss_pred EEEECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccce------------
Confidence 999999998888888899999999997643 2589999999999999998765544332221111000
Q ss_pred ecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc-CCCCEEEEEeCCCcEEEEEccCC
Q 001248 572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 572 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.++...... .......++...+.++.|+ +|++.+++++.|+++++||+..+
T Consensus 236 -----------------~~s~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 236 -----------------LLTLNTLPL-----------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp -----------------SEEEESGGG-----------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred -----------------EEecccccc-----------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 011110000 0011111234568899987 79999999999999999998776
Q ss_pred ccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEE
Q 001248 651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK 730 (1114)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~ 730 (1114)
.....+..
T Consensus 288 -~~~~~l~~----------------------------------------------------------------------- 295 (393)
T 4gq1_A 288 -NDYNEISD----------------------------------------------------------------------- 295 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CCCceEee-----------------------------------------------------------------------
Confidence 22222211
Q ss_pred eccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccc
Q 001248 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810 (1114)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~ 810 (1114)
+...+..+.+.++++.+..
T Consensus 296 -------------------~~~~~~~~~~~~~~~~~~~------------------------------------------ 314 (393)
T 4gq1_A 296 -------------------STMKLGPKNLLPNVQGISL------------------------------------------ 314 (393)
T ss_dssp ---------------------------CCSCSEEEECS------------------------------------------
T ss_pred -------------------ecCccccEEEccccccccc------------------------------------------
Confidence 2222333333343321110
Q ss_pred cCCCCCCCCCccEEEEee-CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 811 DVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 811 ~~~~~~~~~~v~~v~~s~-d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
+...+..+.+.+ ++.++++|+ ||+|++||+.+++....+..|...|.+++|+| ||++||+++++| +.+|.
T Consensus 315 ------~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 315 ------FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp ------SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEE
T ss_pred ------cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEE
Confidence 111122222223 444666777 89999999999998888888999999999999 999999998776 66665
Q ss_pred cc
Q 001248 889 VR 890 (1114)
Q Consensus 889 ~~ 890 (1114)
+.
T Consensus 387 L~ 388 (393)
T 4gq1_A 387 LM 388 (393)
T ss_dssp EG
T ss_pred Ee
Confidence 43
No 124
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=2.2e-26 Score=258.04 Aligned_cols=236 Identities=14% Similarity=0.130 Sum_probs=178.3
Q ss_pred ccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL 434 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 434 (1114)
-.|.+.|++++|||||++ |++|+.+| ++|||+.+++..... +...+..+++++++++
T Consensus 16 ~~h~~~V~~v~fs~dg~~-la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSC-LILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRMLHRTNY 72 (355)
T ss_dssp ---CCCCCEEEECTTSSE-EEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEECTTSSE
T ss_pred ccCCCceEEEEECCCCCE-EEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEcCCCCE
Confidence 349999999999999995 88888665 789999987665421 1125888999999998
Q ss_pred EE-EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCC-cceeEeeccccCE
Q 001248 435 FG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV 512 (1114)
Q Consensus 435 la-s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v 512 (1114)
++ +++.|++|+|||+.+++.+. .+. |...|.+++|+++.. +.+ .|+.|++||+.++ +.+..+.. +.
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~~----~~~-~~~~i~i~d~~~~~~~~~~~~~---~~ 140 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREFI----VVS-YGDVISVFKFGNPWKRITDDIR---FG 140 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSEE----EEE-ETTEEEEEESSTTCCBSSCCEE---EE
T ss_pred EEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCEE----EEE-EcCEEEEEECCCCceeeEEecc---CC
Confidence 85 56778999999999998776 443 667999999998642 333 3789999999998 77777765 33
Q ss_pred EEEeeccCCCceEEEE--EecCCeEEEEEcCCCCC----------------eeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 513 YSVCPHHKENIQFIFS--TALDGKIKAWLYDNLGS----------------RVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l~s--~~~d~~i~~wd~~~~~~----------------~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
..+++++ .+++. |+.||.|++||+.+... ...+..|..
T Consensus 141 ~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~-------------------- 196 (355)
T 3vu4_A 141 GVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN-------------------- 196 (355)
T ss_dssp EEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS--------------------
T ss_pred ceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC--------------------
Confidence 3344444 34554 68899999999987541 333444444
Q ss_pred cceeEEEecCCCCEEEEEeCCCe-EEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.+.+++|+|++++|++++.|++ |++||+.+++.+..+....+...|.+++|+|+|++|++++.|++|++||+..+
T Consensus 197 -~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 197 -PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp -CEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred -ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 4555555555568999999998 99999999999999873223458999999999999999999999999999765
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.8e-26 Score=267.87 Aligned_cols=296 Identities=13% Similarity=0.112 Sum_probs=226.1
Q ss_pred CCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeE--eeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC
Q 001248 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL--EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498 (1114)
Q Consensus 421 ~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~--~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~ 498 (1114)
..+.+++|+|+++++++++.++.|++||+.+++...... .+.+|...|.+++|++++. ++++++.|+.|++||+.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 356799999988888888889999999999988664221 3458999999999999988 799999999999999999
Q ss_pred CcceeEeeccccCEEEEeeccCCCceEE-EEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccce
Q 001248 499 GAKQYIFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 499 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
++.+..+..|...+.+++|+++ +..+ ++++.|+.|++||+++.+....+.. ...+..++++|+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~------------- 264 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDPI--RDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKD------------- 264 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEETT--TTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTT-------------
T ss_pred ceEEEEEcCCCCCeeEEEEcCC--CCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCC-------------
Confidence 9999999999999999998754 3556 5555899999999987655444333 223445555544
Q ss_pred eEEEecCCCCEEEEEe--------CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEE-EEEeCCCcEEEEEcc
Q 001248 578 GVVQFDTTKNRFLAAG--------DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATS 648 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~dg~i~iwd~~ 648 (1114)
++++++++ .|+.|++||+.+++.+..+.... .+.+++|+|+++.+ ++++.++.|++||+.
T Consensus 265 --------g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 265 --------GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp --------SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred --------CCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 44677766 58999999999998877764332 47889999999755 566889999999987
Q ss_pred CCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeE
Q 001248 649 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV 728 (1114)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 728 (1114)
++ +....+.
T Consensus 334 ~~-~~~~~~~---------------------------------------------------------------------- 342 (433)
T 3bws_A 334 EK-KVQKSIP---------------------------------------------------------------------- 342 (433)
T ss_dssp TT-EEEEEEE----------------------------------------------------------------------
T ss_pred CC-cEEEEec----------------------------------------------------------------------
Confidence 66 2222110
Q ss_pred EEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccc
Q 001248 729 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM 808 (1114)
Q Consensus 729 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~ 808 (1114)
+...+.+++|+|+++.+++++.+..
T Consensus 343 ---------------------~~~~~~~~~~s~dg~~l~~~~~~~~---------------------------------- 367 (433)
T 3bws_A 343 ---------------------VFDKPNTIALSPDGKYLYVSCRGPN---------------------------------- 367 (433)
T ss_dssp ---------------------CSSSEEEEEECTTSSEEEEEECCCC----------------------------------
T ss_pred ---------------------CCCCCCeEEEcCCCCEEEEEecCCC----------------------------------
Confidence 2345778999999987777665410
Q ss_pred cccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC-CCcEEE
Q 001248 809 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQI 886 (1114)
Q Consensus 809 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~-dg~v~i 886 (1114)
. + +..++++++ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++
T Consensus 368 --------~---~-------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 368 --------H---P-------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRV 427 (433)
T ss_dssp --------C---T-------TTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEE
T ss_pred --------c---c-------ccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEE
Confidence 0 0 223445556 89999999999988888775 45799999999 8888887764 999999
Q ss_pred EEccc
Q 001248 887 YNVRV 891 (1114)
Q Consensus 887 wd~~~ 891 (1114)
|++..
T Consensus 428 ~~~~~ 432 (433)
T 3bws_A 428 YRRDG 432 (433)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 99863
No 126
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-27 Score=292.70 Aligned_cols=253 Identities=12% Similarity=0.069 Sum_probs=208.9
Q ss_pred CCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcC--CCccccccCCCCCCeEEEEEecCC--CcEEEEEeCCCcEEEEEcc
Q 001248 816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVR 890 (1114)
Q Consensus 816 ~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~la~g~~dg~v~iwd~~ 890 (1114)
+|.+.|++++|+|++++|++|+ ||.|++||+. ++.....+.+|...|++++|+| + +++|++|+.||.|++||+.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence 4999999999999999999998 9999999998 5677788999999999999998 6 8999999999999999999
Q ss_pred cce--EEEeecccccCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc----
Q 001248 891 VDE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ---- 962 (1114)
Q Consensus 891 ~~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp---- 962 (1114)
+++ .+..+.+|...|++++|+|+ +++|++|+.||+|++||+.++...... ...+|. ..|.+++|+|
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~---~~~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI---IIDAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE---EEECCS---SCEEEEEECCCC--
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee---EeecCC---CceEEEEecCcccc
Confidence 986 77888999999999999999 999999999999999999886432222 222333 4799999999
Q ss_pred ---------CCcEEEE-EeCCeEEEEEcCCCceeee--eecCCCCcCeeEEEECCC---CCEEEEEEcCCeEEEEEcCCC
Q 001248 963 ---------DQIHFLV-VHETQLAIFETTKLECVKQ--WVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 963 ---------dg~~l~~-~~d~~i~iwd~~~~~~~~~--~~~~~h~~~v~~l~~s~d---g~~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
++.++++ +.|+.|++||+.++..... ....+|...|++++|+|+ +++|++++.||.|++||+.++
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 5888888 5899999999988743211 123489999999999999 899999999999999999987
Q ss_pred eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1028 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+........ ...+| ...+. +++|+| ++++|++|+.||.|++|++.++.
T Consensus 240 ~~~~~~~~~--~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 240 QGPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSCCBCCBS--SSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCcceeEEe--ccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 532221111 11122 22254 899999 68999999999999999998754
No 127
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=4.8e-26 Score=263.02 Aligned_cols=212 Identities=19% Similarity=0.277 Sum_probs=172.5
Q ss_pred cccCCCCCeeEEEEcCC-CCeEEEEeCCCeEEEEEccCC-------ceeeeeEeeccccCCeeEEEecCCCCeeEEEEec
Q 001248 415 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGG-------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 486 (1114)
Q Consensus 415 ~~~~h~~~V~~l~~spd-g~~las~~~dg~i~iwd~~~~-------~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~ 486 (1114)
....|.+.|++++|+|+ +.+||+++.||.|+|||+.+. ........+.+|...|.+++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 45689999999999997 789999999999999999861 112233478899999999999999886 689999
Q ss_pred CCCCEEEEeCCCCcc-------eeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCC---CCeeeecCCCCee
Q 001248 487 DDKTIKVWDATNGAK-------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWC 556 (1114)
Q Consensus 487 ~d~~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v 556 (1114)
.||+|++||+.++.. ...+.+|...|.+++|++.. +.++++++.|+.|++||+++. .....+..+...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999987432 45677899999999998743 479999999999999999976 3444555565556
Q ss_pred EEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC-cceEEEeccCCCCCCcCeEEEcCCCC-EEE
Q 001248 557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGC-LLA 634 (1114)
Q Consensus 557 ~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~ 634 (1114)
.+++|+|++. ..+++++.||.|++||+++ +..+..+..| ...|.+++|+|++. +|+
T Consensus 281 ~~i~~~p~~~--------------------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h--~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 281 NCLSFNPYSE--------------------FILATGSADKTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILA 338 (430)
T ss_dssp EEEEECSSCT--------------------TEEEEEETTSEEEEEETTCTTSCSEEEECC--SSCEEEEEECSSCTTEEE
T ss_pred EEEEeCCCCC--------------------CEEEEEeCCCeEEEEeCCCCCCCeEEeecC--CCCEEEEEECCCCCCEEE
Confidence 6666555543 2588999999999999988 5667777765 44799999999984 799
Q ss_pred EEeCCCcEEEEEccCC
Q 001248 635 VSTNDNGIKILATSDG 650 (1114)
Q Consensus 635 ~~~~dg~i~iwd~~~~ 650 (1114)
+++.||.|++||+...
T Consensus 339 s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEETTSCCEEEEGGGT
T ss_pred EEeCCCcEEEEeCCCC
Confidence 9999999999998764
No 128
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-26 Score=259.23 Aligned_cols=280 Identities=8% Similarity=0.062 Sum_probs=214.8
Q ss_pred EecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC
Q 001248 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA 551 (1114)
Q Consensus 472 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 551 (1114)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+..
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~---------- 103 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPG---------- 103 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETT----------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEcc----------
Confidence 3445666 79999999999999999999988887 466777776553 9999999999999764
Q ss_pred CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcC--C
Q 001248 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--D 629 (1114)
Q Consensus 552 ~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--d 629 (1114)
+.+.+|+..+++.+..+... +...|.+++|+| +
T Consensus 104 --------------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 138 (343)
T 3lrv_A 104 --------------------------------------------NQITILDSKTNKVLREIEVD-SANEIIYMYGHNEVN 138 (343)
T ss_dssp --------------------------------------------TEEEEEETTTCCEEEEEECC-CSSCEEEEECCC---
T ss_pred --------------------------------------------CceEEeecCCcceeEEeecC-CCCCEEEEEcCCCCC
Confidence 35668999888877766532 234799999999 9
Q ss_pred CCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCcc
Q 001248 630 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVR 709 (1114)
Q Consensus 630 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1114)
++++++++.||+|++||+.++.. ......
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~-------------------------------------------------- 167 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDDSQ-YIVHSA-------------------------------------------------- 167 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSSCE-EEEECC--------------------------------------------------
T ss_pred CCEEEEEeCCCcEEEEECCCCcE-EEEEec--------------------------------------------------
Confidence 99999999999999999987732 221100
Q ss_pred ccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCC
Q 001248 710 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 789 (1114)
Q Consensus 710 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 789 (1114)
.+...+.+++|+|++..+++++.||.|++||+...
T Consensus 168 ---------------------------------------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~------ 202 (343)
T 3lrv_A 168 ---------------------------------------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP------ 202 (343)
T ss_dssp ---------------------------------------CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT------
T ss_pred ---------------------------------------CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC------
Confidence 13446889999999999999999999999987632
Q ss_pred CccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCC---CCCCe--EE
Q 001248 790 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAA--TF 864 (1114)
Q Consensus 790 ~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~---~~~~i--~~ 864 (1114)
......+.. +|...|.+++|+|++.+|+++++++|++||+.+++.+..+.. |...+ .+
T Consensus 203 ----------------~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 203 ----------------DQASSRFPV-DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT 265 (343)
T ss_dssp ----------------TSCCEECCC-CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred ----------------CCCccEEec-cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceE
Confidence 222001111 388999999999999999999977999999999887766554 33334 36
Q ss_pred EEEecCCCcEEEEEeC-CCcEEEEEcccceEEEeecccccCeeEEEEcC---CCCEEEEEeCCCcEEEEeCCC
Q 001248 865 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 865 l~~sp~d~~~la~g~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~---d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
++|+| ++++|++++. |+.|++|++.+....... .++..++|++ +.+.|++++.|+.+.++-...
T Consensus 266 ~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 266 YDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 99999 8999999988 999999999765433222 5678889998 889999999999999885443
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=3.8e-25 Score=260.64 Aligned_cols=334 Identities=13% Similarity=0.148 Sum_probs=240.7
Q ss_pred EEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCccccccccc-CCCCCeeEEEEcCCCCeEEEEeCCCe
Q 001248 365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-DPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1114)
Q Consensus 365 ~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~las~~~dg~ 443 (1114)
+|+|+++ ++++++.|++|.+||..+++.+.. +. +|. +.+++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 3889887 689999999999999999988763 33 443 899999999999999999999
Q ss_pred EEEEEc--cCCceeeeeEeeccccCCeeEEEecC----CCCeeEEEEec-CCCCEEEEeCCCCcceeEeecc--------
Q 001248 444 VQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCG-DDKTIKVWDATNGAKQYIFEGH-------- 508 (1114)
Q Consensus 444 i~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~----d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~h-------- 508 (1114)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+||..+++++.++..+
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7877655 444 345689999999 999 566665 5899999999999999888652
Q ss_pred --c-cCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCee--eecCCCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 509 --E-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 509 --~-~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
. ..+.++.+++.. ..++++...++.|.+||+.+.+... .+ .+...+.. +.|+
T Consensus 276 ~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~---------------------~~~s 332 (543)
T 1nir_A 276 YHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHD---------------------GGWD 332 (543)
T ss_dssp EESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCC---------------------EEEC
T ss_pred cccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccC---------------------ceEC
Confidence 2 268888876643 3678888889999999998755432 11 12222333 4555
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCCCCCcCeEE-EcCC-CCEEEEEe-CCCcEEEEEccCCccceeeccc
Q 001248 584 TTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIR-FNKD-GCLLAVST-NDNGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 584 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~d-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 659 (1114)
|+++++++++ .+++|.+||..+++++..+........-..+. ++|+ +.+++++. .|++|.+||..+....
T Consensus 333 pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~------ 406 (543)
T 1nir_A 333 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP------ 406 (543)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT------
T ss_pred CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCc------
Confidence 5556666554 68999999999999998887422111112233 4676 66666665 5799999998663100
Q ss_pred cccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcc
Q 001248 660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 739 (1114)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~ 739 (1114)
.
T Consensus 407 --~----------------------------------------------------------------------------- 407 (543)
T 1nir_A 407 --Q----------------------------------------------------------------------------- 407 (543)
T ss_dssp --T-----------------------------------------------------------------------------
T ss_pred --h-----------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCC
Q 001248 740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 819 (1114)
Q Consensus 740 ~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~ 819 (1114)
+... .+.. +. .|..
T Consensus 408 ----------~~~~--------------------~v~~----------------------------------l~--~~g~ 421 (543)
T 1nir_A 408 ----------YAWK--------------------KVAE----------------------------------LQ--GQGG 421 (543)
T ss_dssp ----------TBTS--------------------EEEE----------------------------------EE--CSCS
T ss_pred ----------hcCe--------------------EEEE----------------------------------EE--cCCC
Confidence 0000 0000 00 0334
Q ss_pred CccEEEEeeCCCEEEEEe--------CCeEEEEEcCCCccc-ccc--------CCCCCCeEEEEEecCCCcEEEEEe---
Q 001248 820 AVPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTM-ATF--------MPPPPAATFLAFHPQDNNIIAIGM--- 879 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~--------dg~i~iwd~~~~~~~-~~~--------~~~~~~i~~l~~sp~d~~~la~g~--- 879 (1114)
.+..++++||+++|.+++ +++|.|||+.+++.. ..+ ..+...+..++|+| +|+.|+++.
T Consensus 422 ~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~ 500 (543)
T 1nir_A 422 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNG 500 (543)
T ss_dssp CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECC
T ss_pred CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecC
Confidence 456677888888888875 568999999988876 332 34567899999999 888887653
Q ss_pred --CCCcEEEEEcccceEEEeeccc
Q 001248 880 --DDSSIQIYNVRVDEVKSKLKGH 901 (1114)
Q Consensus 880 --~dg~v~iwd~~~~~~~~~l~~h 901 (1114)
.|+.|.|||..+++++..++.+
T Consensus 501 ~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 501 KNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp TTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCCeEEEEECCCceEEEeecCC
Confidence 4799999999999999988864
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=6.7e-25 Score=258.56 Aligned_cols=338 Identities=11% Similarity=0.076 Sum_probs=243.4
Q ss_pred EecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEc--CCCCCeeee
Q 001248 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY--DNLGSRVDY 549 (1114)
Q Consensus 472 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~--~~~~~~~~~ 549 (1114)
+|+|++. ++++++.|++|.+||..+++++.++..+.. +..++|+ ++|++|++++.|+.|.+||+ .+.+....+
T Consensus 144 ~~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~s--pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEEC--CCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 3788886 789999999999999999999999984333 7888865 56689999999999999999 555444444
Q ss_pred cCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCC---------CC
Q 001248 550 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG---------LP 619 (1114)
Q Consensus 550 ~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~ 619 (1114)
. ....+..++|+|.- .++++++++++ .+++|.+||..+++++..+...+. ..
T Consensus 219 ~-~g~~p~~va~sp~~-----------------~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~ 280 (543)
T 1nir_A 219 K-IGIEARSVESSKFK-----------------GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 280 (543)
T ss_dssp E-CCSEEEEEEECCST-----------------TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred e-cCCCcceEEeCCCc-----------------CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCC
Confidence 3 23334455555400 00445777777 589999999999999988865321 12
Q ss_pred CcCeEEEcCCCCE-EEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccc
Q 001248 620 ASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 698 (1114)
Q Consensus 620 ~v~~~~~s~d~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (1114)
.+..+.++|++.. +++...++.|.+||..+... +.
T Consensus 281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~-l~------------------------------------------- 316 (543)
T 1nir_A 281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN-LT------------------------------------------- 316 (543)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS-CE-------------------------------------------
T ss_pred ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc-ce-------------------------------------------
Confidence 4677888886654 44556677888887655410 00
Q ss_pred cccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEE
Q 001248 699 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW 778 (1114)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw 778 (1114)
+..+
T Consensus 317 -------------------------------------------------------~~~i--------------------- 320 (543)
T 1nir_A 317 -------------------------------------------------------VTSI--------------------- 320 (543)
T ss_dssp -------------------------------------------------------EEEE---------------------
T ss_pred -------------------------------------------------------eEEe---------------------
Confidence 0000
Q ss_pred eecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccC
Q 001248 779 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFM 856 (1114)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~ 856 (1114)
.+...+..++|+|||+++++++ +++|.+||+.+++++..+.
T Consensus 321 -------------------------------------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 321 -------------------------------------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp -------------------------------------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred -------------------------------------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence 0122345678899999876654 7899999999998887765
Q ss_pred C----CCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEccc-------ceEEEeecccccCeeEEEEcCCCCEEEEEe---
Q 001248 857 P----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSG--- 921 (1114)
Q Consensus 857 ~----~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--- 921 (1114)
. |......+ ++|+++.+++++. .|++|.+||+.+ ++++.++.+|.+.+..|+|+||+++|++++
T Consensus 364 ~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~ 442 (543)
T 1nir_A 364 VGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN 442 (543)
T ss_dssp CSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTC
T ss_pred cCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCC
Confidence 4 54434333 5784577888875 689999999998 899999999999899999999999999987
Q ss_pred ----CCCcEEEEeCCCCccc-cccccccCCCCCCCCCCceEEEEccCCcEEEEE------eCCeEEEEEcCCCceeeeee
Q 001248 922 ----ADSQLCVWSSDGWEKQ-KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECVKQWV 990 (1114)
Q Consensus 922 ----~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~------~d~~i~iwd~~~~~~~~~~~ 990 (1114)
.+++|.+||+.+.+.. ....+....+.......+..+.|+|||+.|+++ .++.|.|||.++++++..+.
T Consensus 443 ~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 443 PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 2789999999987754 111111100001112368899999999999974 26899999999999998876
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.1e-22 Score=253.51 Aligned_cols=259 Identities=14% Similarity=0.106 Sum_probs=174.5
Q ss_pred CCCceEEEEcCCCCeEEEEEec-CC-----cEEEEEcCCcceeEEeeeeeec-----cCCCCcccccccccCCCCCeeEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTN-VG-----DIGLWEVGSRERLVLRNFKVWD-----LGACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~-dg-----~v~iwd~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
...|++++|||||++ |++++. |+ .|++||+.+++........... +...........-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457899999999997 777776 88 8999999998765421110000 00000000000000001348899
Q ss_pred EEcCCCCeEEEEeCCCeEEEEEccCCc--eeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE
Q 001248 427 IWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504 (1114)
Q Consensus 427 ~~spdg~~las~~~dg~i~iwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 504 (1114)
+|||||++|++++. +.|.+||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|++||+.+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999986 899999999872 233 4667888999999999999 566666 46899999998876655
Q ss_pred eeccccC----------------EEEEeeccCCCceEEEEEecCC---------------------------------eE
Q 001248 505 FEGHEAP----------------VYSVCPHHKENIQFIFSTALDG---------------------------------KI 535 (1114)
Q Consensus 505 ~~~h~~~----------------v~~~~~~~~~~~~~l~s~~~d~---------------------------------~i 535 (1114)
...+... +.+++|+ +||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4444332 3556765 5668888887765 67
Q ss_pred EEEEcCC-CCCeeeec--CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe-----CCCeEEEEECCCcc
Q 001248 536 KAWLYDN-LGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-----DDFSIKFWDMDSVQ 607 (1114)
Q Consensus 536 ~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~ 607 (1114)
.+||+.+ ++...... .+...+..++| ||| ++|++++ .+..|++||+.+++
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg---------------------~~l~~~~~~~~~~~~~i~~~d~~~g~ 323 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP---------------------QHLSFQRQSRDQKKLDLVEVTLASNQ 323 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EET---------------------TEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCC---------------------CEEEEEEecccCCeEEEEEEECCCCc
Confidence 7888876 55433221 13334455555 555 4566544 36789999999998
Q ss_pred eEEEeccCCCC--CCcCeEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001248 608 LLTSIDADGGL--PASPRIRFNKDGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 608 ~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~ 648 (1114)
....+..+... ..+..++|+|||+++++++.+|.++||.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 324 QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 87776544311 135689999999988888889888888654
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.8e-23 Score=239.22 Aligned_cols=302 Identities=11% Similarity=0.085 Sum_probs=219.5
Q ss_pred cCCeeEEEecCCCCeeEEEEec----CCC----CEEEEeC--CCCcce--eEeeccccCEEEEeeccC------------
Q 001248 465 VGGVNDIAFSHPNKQLCVITCG----DDK----TIKVWDA--TNGAKQ--YIFEGHEAPVYSVCPHHK------------ 520 (1114)
Q Consensus 465 ~~~V~~v~~s~d~~~~~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~~~~~~~------------ 520 (1114)
...+...+|++.|.. ++++|+ .|| +|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 346888899999887 676775 567 8999999 899887 458889888887776531
Q ss_pred CCceEEEEEecC------CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 521 ENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 521 ~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|+| +++++++.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg---------------------~~la~~s~ 198 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDG---------------------SKLAYVTF 198 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTS---------------------SEEEEEEC
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCC---------------------CEEEEEEe
Confidence 113456665554 7999999974 3344444444555555555555 47888887
Q ss_pred CC---eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEE-EEeCCCc--EEEEEccCCccceeeccccccccccCC
Q 001248 595 DF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNG--IKILATSDGIRLLRTFENLAYDASRTS 668 (1114)
Q Consensus 595 dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1114)
++ .|++||+.+++... +..+ ...+.+++|+|||+.|+ +++.++. |++||+.++. . ..+.
T Consensus 199 ~~~~~~i~~~d~~tg~~~~-l~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~-~~l~---------- 263 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVRQ-VASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-I-RQVT---------- 263 (415)
T ss_dssp TTSSCEEEEEETTTCCEEE-EECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-E-EECC----------
T ss_pred cCCCcEEEEEECCCCcEEE-eecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-E-EeCc----------
Confidence 75 99999999988764 3333 23688999999999888 5666655 8888887652 1 1111
Q ss_pred CCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcc
Q 001248 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1114)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1114)
T Consensus 264 -------------------------------------------------------------------------------- 263 (415)
T 2hqs_A 264 -------------------------------------------------------------------------------- 263 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceEEEEEccCcceeeeccc-Cc--eEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEE
Q 001248 749 LRATKISRLIFTNSGNAILALAS-NA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~ 825 (1114)
.+...+.+++|+|||+.|+.++. ++ .|++|++. ++.... +. .+...+.+++
T Consensus 264 ~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~----------------------~~~~~~--l~--~~~~~~~~~~ 317 (415)
T 2hqs_A 264 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN----------------------GGAPQR--IT--WEGSQNQDAD 317 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT----------------------SSCCEE--CC--CSSSEEEEEE
T ss_pred CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC----------------------CCCEEE--Ee--cCCCcccCeE
Confidence 14456789999999998888776 45 45555543 333221 11 1456788999
Q ss_pred EeeCCCEEEEEe-C---CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC---cEEEEEcccceEEEee
Q 001248 826 LSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 826 ~s~d~~~l~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg---~v~iwd~~~~~~~~~l 898 (1114)
|+|||++|++++ + ..|++||+.+++.. .+..+. .+.+++|+| +|++|++++.++ .|++||+. ++....+
T Consensus 318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l 393 (415)
T 2hqs_A 318 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKARL 393 (415)
T ss_dssp ECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEEC
T ss_pred ECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEEe
Confidence 999999999887 3 47999999987763 455454 899999999 899888888777 79999987 5557889
Q ss_pred cccccCeeEEEEcCCC
Q 001248 899 KGHSKRITGLAFSHAL 914 (1114)
Q Consensus 899 ~~h~~~V~~l~~s~d~ 914 (1114)
.+|.+.|.+++|+|.-
T Consensus 394 ~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 394 PATDGQVKFPAWSPYL 409 (415)
T ss_dssp CCSSSEEEEEEECCCC
T ss_pred eCCCCCCcCCcccccc
Confidence 9999999999999864
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=3.1e-23 Score=257.76 Aligned_cols=234 Identities=9% Similarity=0.068 Sum_probs=165.0
Q ss_pred CceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCC---CeeEEEEcCCCCeEE
Q 001248 360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLFG 436 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~la 436 (1114)
.+.+++|||||++ +++ +.||+|++||+.+++... ++.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEEE
Confidence 4678999999994 666 689999999999987654 2445554 499999999999999
Q ss_pred EEeCC---------CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeec
Q 001248 437 VAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507 (1114)
Q Consensus 437 s~~~d---------g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 507 (1114)
+++.+ +.+.+||+.+++. ..+....+|...+.+++|||||+ .|+.++. +.|++||+.+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99874 7788999999875 32323445666799999999999 4666664 7899999999887766655
Q ss_pred cccCE------------------EEEeeccCCCceEEEEEecC-CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeE
Q 001248 508 HEAPV------------------YSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 508 h~~~v------------------~~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
+...+ .+++|+ +||+.|++++.| +.+.+|++...... ....+..+.++++|.
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~S--pDg~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~-- 223 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWS--PDGTRLAYAAINDSRVPIMELPTYTGS-----IYPTVKPYHYPKAGS-- 223 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEEC--TTSSEEEEEEEECTTSCEEEECCCSSS-----SSCCCEEEECCBTTS--
T ss_pred CCCCceECcccceeEEEEeccCcceEEEC--CCCCEEEEEEECCCccceEEeeccCCc-----CCCcceeccCCCCCC--
Confidence 44433 677875 456788877754 46777876532211 112244455555443
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC----CCCCcCeEEEcCCCCEEEEEeCC----C
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND----N 640 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~d----g 640 (1114)
. ..+..|++||+.+++....+..+. +...+..++|+|||+++++.... .
T Consensus 224 -------------------~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 280 (723)
T 1xfd_A 224 -------------------E----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVS 280 (723)
T ss_dssp -------------------C----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEE
T ss_pred -------------------C----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeE
Confidence 1 234589999999988656665431 12357789999999988766432 4
Q ss_pred cEEEEEccCC
Q 001248 641 GIKILATSDG 650 (1114)
Q Consensus 641 ~i~iwd~~~~ 650 (1114)
.|++||+.++
T Consensus 281 ~i~~~d~~~g 290 (723)
T 1xfd_A 281 ILTLCDATTG 290 (723)
T ss_dssp EEEEEETTTC
T ss_pred EEEEEeCCCC
Confidence 5677776555
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.2e-22 Score=253.02 Aligned_cols=327 Identities=13% Similarity=0.050 Sum_probs=224.7
Q ss_pred CCCeeEEEEcCCCCeEEEEeC-CC-----eEEEEEccCCceeeeeEeecccc------------------------CCee
Q 001248 420 GVSVNRVIWSPDGSLFGVAYS-RH-----IVQIYSYHGGDEVRQHLEIDAHV------------------------GGVN 469 (1114)
Q Consensus 420 ~~~V~~l~~spdg~~las~~~-dg-----~i~iwd~~~~~~~~~~~~l~~h~------------------------~~V~ 469 (1114)
...|.+++|||||++|++++. |+ .|++||+.+++... .+..|. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 447999999999999999998 88 89999999987543 233332 2389
Q ss_pred EEEecCCCCeeEEEEecCCCCEEEEeCCCCc--ceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCee
Q 001248 470 DIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV 547 (1114)
Q Consensus 470 ~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 547 (1114)
+++|||||+ +|++++. +.|++||+.++. .+..+..|...+..++|++ ||++|++++ ++.|.+||+.++....
T Consensus 113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999 5666665 899999999883 4566777888999999865 567888887 5699999998754433
Q ss_pred eecCCCCe----------------eEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCC---------------
Q 001248 548 DYEAPGRW----------------CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--------------- 596 (1114)
Q Consensus 548 ~~~~~~~~----------------v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------- 596 (1114)
....+... +..++|+|||+ +|++++.|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~---------------------~l~~~~~d~~~~~~~~~~~~~p~~ 245 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS---------------------AIAYARIDESPVPVQKRYEVYADR 245 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS---------------------CEEEEEEECTTSCEEEEEEECSSC
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCC---------------------EEEEEEEcCCCCceEecCCCCCCc
Confidence 32222221 24455555555 454444333
Q ss_pred ------------------eEEEEECCC-cceEEEeccCCCCCCcCeEEEcCCCCEEEEEeC-----CCcEEEEEccCCcc
Q 001248 597 ------------------SIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN-----DNGIKILATSDGIR 652 (1114)
Q Consensus 597 ------------------~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~-----dg~i~iwd~~~~~~ 652 (1114)
.|++||+.+ ++.........+...+..++| |||+.|++++. +..|++||+.++.
T Consensus 246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~- 323 (741)
T 2ecf_A 246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ- 323 (741)
T ss_dssp EEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-
T ss_pred ccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-
Confidence 788999988 876554433223446789999 99999987754 4456777665541
Q ss_pred ceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEec
Q 001248 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1114)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1114)
....+..+.
T Consensus 324 ~~~~~~~~~----------------------------------------------------------------------- 332 (741)
T 2ecf_A 324 QRVLAHETS----------------------------------------------------------------------- 332 (741)
T ss_dssp EEEEEEEEC-----------------------------------------------------------------------
T ss_pred eEEEEEcCC-----------------------------------------------------------------------
Confidence 111110000
Q ss_pred cCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccC
Q 001248 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1114)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 812 (1114)
++
T Consensus 333 ---------------------------------------~~--------------------------------------- 334 (741)
T 2ecf_A 333 ---------------------------------------PT--------------------------------------- 334 (741)
T ss_dssp ---------------------------------------SS---------------------------------------
T ss_pred ---------------------------------------CC---------------------------------------
Confidence 00
Q ss_pred CCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcC-CCccccccCCCCCCeEEE-EEecCCCcEE-EEEeCCC--cEEE
Q 001248 813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFL-AFHPQDNNII-AIGMDDS--SIQI 886 (1114)
Q Consensus 813 ~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~-~~~~~~~~~~~~~~i~~l-~~sp~d~~~l-a~g~~dg--~v~i 886 (1114)
.-..+.+++|+|||+++++++ +|.++||.+. ++. ...+..+...+..+ +|+| +++.| ++++.++ .++|
T Consensus 335 ----~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l 408 (741)
T 2ecf_A 335 ----WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQI 408 (741)
T ss_dssp ----CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEE
T ss_pred ----cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEE
Confidence 001234567888888777766 6766666654 344 66777777788887 5999 77655 5566665 8999
Q ss_pred EEccc-ceEEEeecccccCeeEEEEcCCCCEEEEEeCC----CcEEEEeCCCC
Q 001248 887 YNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGW 934 (1114)
Q Consensus 887 wd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----~~v~iwd~~~~ 934 (1114)
|++.. ++....+.. ...+.+++|||||++|+....+ ..+.+|+..++
T Consensus 409 ~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 409 YAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 99875 555666765 6678899999999998876544 46889988654
No 135
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=5.5e-23 Score=235.14 Aligned_cols=242 Identities=10% Similarity=0.022 Sum_probs=177.4
Q ss_pred CCCceEEEEcCCCCeEEEEEe----cCC----cEEEEEc--CCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGT----NVG----DIGLWEV--GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~----~dg----~v~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1114)
...+....|++.|..++++|+ .+| +|+|||+ .+++.+... .+.+|...+..++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 124 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG 124 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence 357888999999988788887 467 8999999 888866432 2456777777777
Q ss_pred EcC--------------CCCeEEEEeCC------CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC
Q 001248 428 WSP--------------DGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487 (1114)
Q Consensus 428 ~sp--------------dg~~las~~~d------g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~ 487 (1114)
+++ .+..++.++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++.
T Consensus 125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~ 198 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence 764 26677776654 799999998643 33 5778999999999999999 6788877
Q ss_pred CC---CEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEE-EEecCCe--EEEEEcCCCCCeeeecCCCCeeEEEEE
Q 001248 488 DK---TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAY 561 (1114)
Q Consensus 488 d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~ 561 (1114)
++ .|++||+.+++.. .+..|...+.+++|++ ||+.|+ +++.++. |.+||+.+... ..+..+...+.+++|
T Consensus 199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW 274 (415)
T ss_dssp TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence 75 8999999998865 5677888999999865 556666 6666654 99999987543 344445555566666
Q ss_pred ecCCCeEEeeecccceeEEEecCCCCEEEEEeC-CC--eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeC
Q 001248 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN 638 (1114)
Q Consensus 562 s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 638 (1114)
+|||+ +|++++. ++ .|++||+.+++.. .+..+. ..+.+++|+|||++|++++.
T Consensus 275 spdg~---------------------~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 275 FPDSQ---------------------NLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG--SQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp CTTSS---------------------EEEEEECTTSSCEEEEEETTSSCCE-ECCCSS--SEEEEEEECTTSSEEEEEEE
T ss_pred CCCCC---------------------EEEEEECCCCCcEEEEEECCCCCEE-EEecCC--CcccCeEECCCCCEEEEEEC
Confidence 66554 6777665 44 7888899887643 333332 35778999999999988876
Q ss_pred C---CcEEEEEccCC
Q 001248 639 D---NGIKILATSDG 650 (1114)
Q Consensus 639 d---g~i~iwd~~~~ 650 (1114)
+ ..|++||+.++
T Consensus 331 ~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 331 NGGQQHIAKQDLATG 345 (415)
T ss_dssp CSSCEEEEEEETTTC
T ss_pred cCCceEEEEEECCCC
Confidence 4 46777776554
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.2e-21 Score=242.46 Aligned_cols=243 Identities=11% Similarity=0.095 Sum_probs=171.2
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCC-----CccccccCCCCCC--------------eEEEEEecCCCcEEEEEe-
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMT-----FKTMATFMPPPPA--------------ATFLAFHPQDNNIIAIGM- 879 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~--------------i~~l~~sp~d~~~la~g~- 879 (1114)
.+.+++|||||++|+++.++.|++||+.+ ++.......+... +.+++||| ||++||+++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~ 200 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM 200 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence 35556777888877776678888888877 6655443333332 58999999 899999887
Q ss_pred --------------------------------CCCcEEEEEcccceEEEeec--ccccCeeEEEEcCCCCEEEEEeCCC-
Q 001248 880 --------------------------------DDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADS- 924 (1114)
Q Consensus 880 --------------------------------~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~D~- 924 (1114)
.+..|++||+.+++...... .|...+.+++|+|||++|++++.|+
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 45789999999987655442 5777899999999999999988776
Q ss_pred ----cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc--CCcEEEEE-eCCeEEEEEcC-CCceeeeeecCCCCc
Q 001248 925 ----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVV-HETQLAIFETT-KLECVKQWVPRESSA 996 (1114)
Q Consensus 925 ----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp--dg~~l~~~-~d~~i~iwd~~-~~~~~~~~~~~~h~~ 996 (1114)
.|++||+.+++............ ....+..++|+| ||++++++ .++.+++|++. ++..+..+. .|..
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~---~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~~ 355 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKH---YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGEW 355 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSS---CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSSS
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCC---eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCCe
Confidence 89999999863211111111111 011246789999 99988885 67788888876 566666554 5566
Q ss_pred CeeE-EEECCCCCEEEEEEcC-C----eEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-
Q 001248 997 PITH-ATFSCDSQLVYACFLD-A----TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD- 1069 (1114)
Q Consensus 997 ~v~~-l~~s~dg~~l~s~s~D-g----~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D- 1069 (1114)
.+.+ ++|+|||+.|+.++.+ + .|+.||+.+++. ..+. . ...+. .++|+| |+++|+.++.+
T Consensus 356 ~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~------~---~~~~~--~~~~sp-dg~~l~~~~~~~ 422 (706)
T 2z3z_A 356 EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT------P---ESGMH--RTQLSP-DGSAIIDIFQSP 422 (706)
T ss_dssp CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC------C---SSSEE--EEEECT-TSSEEEEEEECS
T ss_pred EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc------C---CCceE--EEEECC-CCCEEEEEecCC
Confidence 7876 7999999988766554 3 677788887763 3332 1 11144 789999 67877766444
Q ss_pred ---CcEEEEeccCCC
Q 001248 1070 ---GGVHVFEPLESE 1081 (1114)
Q Consensus 1070 ---g~v~vW~i~~~~ 1081 (1114)
+.|++||+.+++
T Consensus 423 ~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 423 TVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCSCEEEEEESSSCE
T ss_pred CCCcEEEEEECCCCe
Confidence 569999998876
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.3e-21 Score=239.91 Aligned_cols=248 Identities=7% Similarity=0.013 Sum_probs=155.1
Q ss_pred ceEEEEcCCCCeEEEEEecCCcEEEEEcCCcce--eEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER--LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
+..+.|+ |.. +++++.++ | +||+.+|+. ....... .+.. ...........+...|.+++|||| ++++.+
T Consensus 28 ~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~--~~~~-~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAA--DLNA-LMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF 98 (706)
T ss_dssp CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHH--HHHT-TC-----------CCCEEEEETTT-TEEEEE
T ss_pred CCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechh--Hhhh-hccchhccccccccCceeEEECCC-CeEEEE
Confidence 4557888 555 55566677 8 999999876 3211000 0000 000000000112247999999999 666666
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCC-----CcceeEeeccccC--
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----GAKQYIFEGHEAP-- 511 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~h~~~-- 511 (1114)
. ++.|++||+.+++... +..+...+.+++|||||+ .|+++ .|+.|++||+.+ ++.......+...
T Consensus 99 ~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~ 170 (706)
T 2z3z_A 99 T-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV 170 (706)
T ss_dssp E-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE
T ss_pred E-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE
Confidence 4 5999999999876443 456777899999999999 56664 579999999998 7766544444443
Q ss_pred ------------EEEEeeccCCCceEEEEEe---------------------------------cCCeEEEEEcCCCCCe
Q 001248 512 ------------VYSVCPHHKENIQFIFSTA---------------------------------LDGKIKAWLYDNLGSR 546 (1114)
Q Consensus 512 ------------v~~~~~~~~~~~~~l~s~~---------------------------------~d~~i~~wd~~~~~~~ 546 (1114)
+.+++|+ +||++|++++ .+..|.+||+.+++..
T Consensus 171 ~g~~~~~ee~~~~~~~~~S--pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~ 248 (706)
T 2z3z_A 171 YGQAVHQREFGIEKGTFWS--PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV 248 (706)
T ss_dssp ESSCCGGGCTTCCCSEEEC--TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred cccchhhhhcCCCceEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence 3667765 5668888887 3467888888765433
Q ss_pred eeec--CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCC-----eEEEEECCCcceEEEeccCCCC-
Q 001248 547 VDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-----SIKFWDMDSVQLLTSIDADGGL- 618 (1114)
Q Consensus 547 ~~~~--~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~- 618 (1114)
.... .+...+..++ |+|+++++++++.++ .|++||+.+++....+......
T Consensus 249 ~~~~~~~~~~~~~~~~---------------------~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~ 307 (706)
T 2z3z_A 249 YLQTGEPKEKFLTNLS---------------------WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH 307 (706)
T ss_dssp ECCCCSCTTCEEEEEE---------------------ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred eeccCCCCceeEeeEE---------------------EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence 2211 2233444444 455555677766654 8999999998433333211111
Q ss_pred --CCcCeEEEcC--CCCEEEEEeCCCcEEEEEcc
Q 001248 619 --PASPRIRFNK--DGCLLAVSTNDNGIKILATS 648 (1114)
Q Consensus 619 --~~v~~~~~s~--d~~~l~~~~~dg~i~iwd~~ 648 (1114)
..+.+++|+| ||++++++..++.+++|.+.
T Consensus 308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred eECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 2346789999 99999999899999998764
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=3e-21 Score=239.80 Aligned_cols=384 Identities=12% Similarity=0.079 Sum_probs=243.7
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCC---eeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
.+.+++|+ +||+++++ +.||.|++||+.+++....+..+.. .+.+++|+|||+
T Consensus 18 ~~~~~~~s--pdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~--------------------- 73 (723)
T 1xfd_A 18 HDPEAKWI--SDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE--------------------- 73 (723)
T ss_dssp CCCCCCBS--SSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS---------------------
T ss_pred cccccEEc--CCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCC---------------------
Confidence 35566765 45577766 7899999999998877666554443 255666666655
Q ss_pred EEEEEeCC---------CeEEEEECCCcceEEEecc-CCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 588 RFLAAGDD---------FSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 588 ~l~~~~~d---------g~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
+|++++.+ +.|++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|++.++. ..+..
T Consensus 74 ~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~~~~~ 150 (723)
T 1xfd_A 74 YALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVV 150 (723)
T ss_dssp EEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEEE
T ss_pred EEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-eEEEe
Confidence 67776653 7899999998876 33332 223334789999999999999886 799999988773 22222
Q ss_pred cccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCC
Q 001248 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP 737 (1114)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~ 737 (1114)
..+...+ +..+.. -|-.+
T Consensus 151 ~~~~~~~----------------------------------------------------~~~g~~-----~~v~~----- 168 (723)
T 1xfd_A 151 STGKEGV----------------------------------------------------IYNGLS-----DWLYE----- 168 (723)
T ss_dssp CCCBTTT----------------------------------------------------EEEEEC-----CHHHH-----
T ss_pred cCCCCCc----------------------------------------------------eECccc-----ceeEE-----
Confidence 1111000 000000 00000
Q ss_pred ccccccccCccccccceEEEEEccCcceeeecccC-ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCC
Q 001248 738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 816 (1114)
Q Consensus 738 ~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~ 816 (1114)
..-...+.+++|+|||+.|+.++.+ +.+.+|++.... + .
T Consensus 169 ----------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~--------------------~----------~ 208 (723)
T 1xfd_A 169 ----------EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------------G----------S 208 (723)
T ss_dssp ----------HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS--------------------S----------S
T ss_pred ----------EEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC--------------------C----------c
Confidence 0012345789999999999888765 456666653110 0 0
Q ss_pred CCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCC------CCCeEEEEEecCCCcEEEEEeC----CCcEEE
Q 001248 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIGMD----DSSIQI 886 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~la~g~~----dg~v~i 886 (1114)
+...+..+.+.++|.. ..+..|++||+.+++....+..+ ...+..++||| ||++|++... +..|++
T Consensus 209 ~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 209 IYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp SSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEE
T ss_pred CCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEE
Confidence 2234677888888763 22468999999988865666544 56789999999 8988877653 358999
Q ss_pred EEcccceEEEeeccc-ccCee----EEEEcCCCCEEEE--EeCCC------cEEEEe-CCCCccccccccccCCCCCCCC
Q 001248 887 YNVRVDEVKSKLKGH-SKRIT----GLAFSHALNVLVS--SGADS------QLCVWS-SDGWEKQKNRFLQIPTGRTPTA 952 (1114)
Q Consensus 887 wd~~~~~~~~~l~~h-~~~V~----~l~~s~d~~~l~s--~s~D~------~v~iwd-~~~~~~~~~~~~~~~~~~~~~~ 952 (1114)
||+.++++...+..+ ...+. .++|+|||+.|+. ...|+ .|.+|| ..+++... ......++
T Consensus 285 ~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~---- 358 (723)
T 1xfd_A 285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGD---- 358 (723)
T ss_dssp EETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSS----
T ss_pred EeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc--eeEeecCC----
Confidence 999999877666443 34343 7899999997775 45666 466677 34332000 11111121
Q ss_pred CCceE-EEEccCCcEEEE-EeC---CeEEEEEcCCCc--eeeeeecC-CCCcCeeEEEECCCCCEEEEEEcC-C--eEEE
Q 001248 953 QSDTR-VQFHQDQIHFLV-VHE---TQLAIFETTKLE--CVKQWVPR-ESSAPITHATFSCDSQLVYACFLD-A--TVCV 1021 (1114)
Q Consensus 953 ~~i~~-v~fspdg~~l~~-~~d---~~i~iwd~~~~~--~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~s~D-g--~I~v 1021 (1114)
..+.. ++|+|||+.|+. +.+ +.+.+|++.... ....+... .|...+..++|||||++|+..... + .+.+
T Consensus 359 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~ 438 (723)
T 1xfd_A 359 WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTV 438 (723)
T ss_dssp SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEE
T ss_pred eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEE
Confidence 12343 699999999987 444 779999986432 23333210 156778999999999998865433 2 3455
Q ss_pred EEcCCCeeeEEe
Q 001248 1022 FSAANLKLRCRI 1033 (1114)
Q Consensus 1022 wd~~~~~~~~~~ 1033 (1114)
++..++..+..+
T Consensus 439 ~~~~~~~~~~~~ 450 (723)
T 1xfd_A 439 HNTTDKKKMFDL 450 (723)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEEEEe
Confidence 676666655444
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=7.2e-21 Score=212.73 Aligned_cols=300 Identities=9% Similarity=0.136 Sum_probs=199.1
Q ss_pred cccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccC-ceEEEEeecccccCCCCCccccc
Q 001248 717 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASV 795 (1114)
Q Consensus 717 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~ 795 (1114)
+++++.++.|++|++...........+ .+...+..++|+|+|+.+++++.+ +.+.+|++...
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~------------ 70 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD------------ 70 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT------------
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCC------------
Confidence 344477899999999642211111111 255678889999999988888876 99999997511
Q ss_pred cccccCCCCCccccc-cCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEc---CCCccccccCCCCCCeEEEEEec
Q 001248 796 APQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNM---MTFKTMATFMPPPPAATFLAFHP 869 (1114)
Q Consensus 796 ~~~~w~~~~g~~~~~-~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~sp 869 (1114)
++..... .+. ....+..++|+|++++|++++ ++.|.+||+ .+.+....+..+ ..+.+++|+|
T Consensus 71 --------~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~ 138 (343)
T 1ri6_A 71 --------DGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP 138 (343)
T ss_dssp --------TCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT
T ss_pred --------CCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC
Confidence 1111100 011 123688999999999887765 688999999 444444555533 4588999999
Q ss_pred CCCcEEEEEe-CCCcEEEEEccc-ceEEE----eecc-cccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCC--Cccccc
Q 001248 870 QDNNIIAIGM-DDSSIQIYNVRV-DEVKS----KLKG-HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG--WEKQKN 939 (1114)
Q Consensus 870 ~d~~~la~g~-~dg~v~iwd~~~-~~~~~----~l~~-h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~--~~~~~~ 939 (1114)
++++|++++ .++.|++||+.+ ++... .+.. ....+.+++|+|++++|++++ .++.|.+|+++. ++....
T Consensus 139 -dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 139 -DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV 217 (343)
T ss_dssp -TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred -CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence 887777776 899999999987 65432 2222 345788999999999776554 889999999964 322111
Q ss_pred cccccCCCCCCCCCCceEEEEccCCcEEEE-E-eCCeEEEEEcC--CC--ceeeeeecCCCCcCeeEEEECCCCCEEEEE
Q 001248 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETT--KL--ECVKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~-~d~~i~iwd~~--~~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1114)
...............+..++|+|||++|++ . .++.|.+||+. ++ +.+..+. .+. .+.+++|+|||++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TET-QPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSS-SCCCEEECTTSSEEEEE
T ss_pred eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCC-ccceEEECCCCCEEEEe
Confidence 122211111111234568999999998886 4 67899999998 33 3333333 223 38999999999999888
Q ss_pred E-cCCeEEEEEc--CCCeeeEEeCCCcccCCCCCCCCccceEEEecCC
Q 001248 1014 F-LDATVCVFSA--ANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1058 (1114)
Q Consensus 1014 s-~Dg~I~vwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 1058 (1114)
+ .++.|.+|++ .++++...-. ++.+ ..|..++|.++
T Consensus 295 ~~~~~~v~v~~~d~~~g~~~~~~~----~~~g-----~~p~~i~~~~~ 333 (343)
T 1ri6_A 295 GQKSHHISVYEIVGEQGLLHEKGR----YAVG-----QGPMWVVVNAH 333 (343)
T ss_dssp CTTTCEEEEEEEETTTTEEEEEEE----EECS-----SSCCEEEEEEE
T ss_pred cCCCCeEEEEEEcCCCceeeEccc----cccC-----CCCeeEEEEcc
Confidence 8 5799999954 5665432211 2222 23457788774
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=7e-20 Score=203.52 Aligned_cols=239 Identities=13% Similarity=0.086 Sum_probs=171.6
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC-CC
Q 001248 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-RH 442 (1114)
Q Consensus 364 v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-dg 442 (1114)
..|.+++.+++++++.++.|.+||..+++.... +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 467788888899999999999999999987653 22344456 9999999997777665 88
Q ss_pred eEEEEEccCCce-eeeeEeeccccCCeeEEEecCCCCeeEEEEecCC-C--CEEEEeCCCCcceeEeeccccCEEEEeec
Q 001248 443 IVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-K--TIKVWDATNGAKQYIFEGHEAPVYSVCPH 518 (1114)
Q Consensus 443 ~i~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 518 (1114)
.|.+||+.+++. .. .+..+..+..+++|+|+|+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999876 33 4555666666699999999 55655555 3 8999999999988887644 456888876
Q ss_pred cCCCce-EEEEEecCCe-EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE-eCC
Q 001248 519 HKENIQ-FIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDD 595 (1114)
Q Consensus 519 ~~~~~~-~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 595 (1114)
+ +|+ ++++...++. |.+|++.......... ....+.+ .....++|+|++++++++ ..+
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--------~~~~~~~---------~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTG--------QEFISGG---------TRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEE--------EEEECSS---------SSEEEEEECTTSSEEEEEETTT
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecC--------CccccCC---------CCccceEECCCCCEEEEEeCCC
Confidence 5 445 4455556688 9999998644332111 0000111 134556777777766554 468
Q ss_pred CeEEEEECCCcce---EEEeccCCCCCCcCeEEEcCCCCEEEEEe-CCCcEEEEEccCC
Q 001248 596 FSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 650 (1114)
Q Consensus 596 g~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iwd~~~~ 650 (1114)
+.|++||+.+++. +..+... ..+..++|+|||++++++. .++.|.+||..++
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred CeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 9999999999988 7777644 3468899999999776665 4778999999877
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=2.5e-20 Score=208.30 Aligned_cols=244 Identities=11% Similarity=0.143 Sum_probs=173.8
Q ss_pred CCCCccEEEEeeCCCEEEEEe-C-CeEEEEEcC--CCc--cccccCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEc
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-G-GKISLFNMM--TFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNV 889 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-d-g~i~iwd~~--~~~--~~~~~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~ 889 (1114)
+...+.+++|+|++++|++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|++||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 556788999999999988887 4 899999997 444 333444333 789999999 787666555 5889999999
Q ss_pred ---ccceEEEeecccccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCC-Ccccccc--ccccCCCCCCCCCCceEEEEcc
Q 001248 890 ---RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG-WEKQKNR--FLQIPTGRTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 890 ---~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~i~~v~fsp 962 (1114)
.+++.+..+..+. .+.+++|+|++++|++++ .|+.|.+|++.+ ++..... ......+ ..+..++|+|
T Consensus 114 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p 187 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHP 187 (343)
T ss_dssp ETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECT
T ss_pred CCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECC
Confidence 5555666665544 588999999999888887 899999999987 4332111 1122112 2568899999
Q ss_pred CCcEEEE-E-eCCeEEEEEcCC--Cce--eeeee--cCCC--CcCeeEEEECCCCCEEEEEE-cCCeEEEEEcC--CC--
Q 001248 963 DQIHFLV-V-HETQLAIFETTK--LEC--VKQWV--PRES--SAPITHATFSCDSQLVYACF-LDATVCVFSAA--NL-- 1027 (1114)
Q Consensus 963 dg~~l~~-~-~d~~i~iwd~~~--~~~--~~~~~--~~~h--~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~--~~-- 1027 (1114)
+|+++++ + .++.+.+|++.. ++. ..... ..++ ...+.+++|+|||++|+++. .|+.|++||+. ++
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~ 267 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 267 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence 9998766 4 678999999953 432 22221 1111 34677899999999887555 78999999998 33
Q ss_pred eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe-CCCcEEEEeccCC
Q 001248 1028 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLES 1080 (1114)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~-~Dg~v~vW~i~~~ 1080 (1114)
+.+..+. .+ . .+..++|+| |+++|++++ .|+.|.+|++...
T Consensus 268 ~~~~~~~------~~--~---~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~ 309 (343)
T 1ri6_A 268 SKEGFQP------TE--T---QPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGE 309 (343)
T ss_dssp EEEEEEE------CS--S---SCCCEEECT-TSSEEEEECTTTCEEEEEEEETT
T ss_pred EEeeeec------CC--C---ccceEEECC-CCCEEEEecCCCCeEEEEEEcCC
Confidence 3443333 11 1 133799999 678888777 6899999977643
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=4.1e-20 Score=205.39 Aligned_cols=286 Identities=13% Similarity=0.066 Sum_probs=197.0
Q ss_pred EEEccCcce-eeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEE
Q 001248 757 LIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1114)
Q Consensus 757 l~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 835 (1114)
..|.++++. +++...++.|.+||+. +++....... +...+ .++|+|||+++++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~~---~~~~~-~~~~s~dg~~l~~ 56 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQITL---GYDFV-DTAITSDCSNVVV 56 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEEC---CCCEE-EEEECSSSCEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEEc---cCCcc-eEEEcCCCCEEEE
Confidence 345555554 5666778999988765 3333221111 34445 9999999997776
Q ss_pred Ee--CCeEEEEEcCCCcc-ccccCCCCCCeEEEEEecCCCcEEEEEeCCC---cEEEEEcccceEEEeecccccCeeEEE
Q 001248 836 AS--GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKLKGHSKRITGLA 909 (1114)
Q Consensus 836 ~~--dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~ 909 (1114)
++ ++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++ .|++||+.+++.+..+..+ ....+++
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~ 134 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA 134 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence 65 68999999999887 666666666555599999 888888666553 8999999999988877654 4468999
Q ss_pred EcCCCCEEEE-EeCCCc-EEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-E-eCCeEEEEEcCCCce
Q 001248 910 FSHALNVLVS-SGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTKLEC 985 (1114)
Q Consensus 910 ~s~d~~~l~s-~s~D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~-~d~~i~iwd~~~~~~ 985 (1114)
|+|||++|++ ...++. |.+|++................ ...+..++|+|||+++++ + .++.|.+||+.+++.
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 9999986554 456688 9999998533211110111111 134689999999997766 3 578999999999988
Q ss_pred ---eeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCee--eEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 986 ---VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 986 ---~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
+..+.. ...+..++|+|||++|++++ .++.|.+||+.+++. +..+......... .......++|+| |
T Consensus 211 ~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sp-d 283 (331)
T 3u4y_A 211 ITLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR---PLFGANQMALNK-T 283 (331)
T ss_dssp CEEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG---GGTTCCCEEECT-T
T ss_pred cceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC---CcccccceEECC-C
Confidence 666652 46778999999999887665 478899999999987 4333211001000 000112589999 6
Q ss_pred CCeEEEE-eCCCcEEEEeccCCC
Q 001248 1060 PNEFALG-LSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1060 ~~~l~s~-~~Dg~v~vW~i~~~~ 1081 (1114)
+++|+++ ..++.|.+|++.+..
T Consensus 284 g~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 284 ETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp SSEEEEEETTTTEEEEEETTSCE
T ss_pred CCEEEEecCCCCcEEEEEecCCc
Confidence 7777555 456799999998866
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=1.5e-19 Score=202.88 Aligned_cols=273 Identities=12% Similarity=0.120 Sum_probs=205.8
Q ss_pred ccceEEEEEccCcceeeeccc-------CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccE
Q 001248 751 ATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC 823 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~ 823 (1114)
...+..++|+|+++.+++++. ++.|.+||.. ++....... ....+..
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----------------------~~~~~~~~~----~~~~~~~ 93 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----------------------TLEVTQAIH----NDLKPFG 93 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----------------------TCCEEEEEE----ESSCCCS
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----------------------CCeEEEEEe----cCCCcce
Confidence 356789999999998887764 4577777654 333322211 2334678
Q ss_pred EEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCC---------CeEEEEEecCCCcEEEEEe--CCCcEEEEEcc
Q 001248 824 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPP---------AATFLAFHPQDNNIIAIGM--DDSSIQIYNVR 890 (1114)
Q Consensus 824 v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~---------~i~~l~~sp~d~~~la~g~--~dg~v~iwd~~ 890 (1114)
++++++|++++++. ++.|.+||..+++.+..+..+.. .+.+++|+| +++++++++ .++.|++||..
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence 99999999776665 68999999999988777765432 278899999 777666665 57899999999
Q ss_pred cceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 891 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
+++.+..+..+...+.+++|+||+++|++++.++.|.+||+.+++........ ..++ ...+..++|+|||++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~---~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL-DDGK---EHFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC-CSSS---CCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC-CCCC---CcccceEEECCCCCEEEEE
Confidence 99998888867777899999999999999999999999999986643321110 1111 1356789999999988774
Q ss_pred --eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCC
Q 001248 971 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1047 (1114)
Q Consensus 971 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1114)
.++.|.+||..+++.+..+.... ...++|+|||+++++++ .++.|.+||..+++.+..+. .+
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~----~~------- 313 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD----TP------- 313 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE----CC-------
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe----cC-------
Confidence 45899999999999888776422 36799999999876666 68999999999999988775 11
Q ss_pred ccceEEEecCCCCCeEEEEeCCC
Q 001248 1048 VHPLVIAAHPQEPNEFALGLSDG 1070 (1114)
Q Consensus 1048 v~~~~~~~~~~d~~~l~s~~~Dg 1070 (1114)
..+..++|+| |+++|+++..++
T Consensus 314 ~~~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 314 THPNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp SEEEEEEECT-TSCEEEEEEECC
T ss_pred CCCCeEEEcC-CCCEEEEEEccc
Confidence 2345899999 678777666553
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=6.8e-20 Score=204.20 Aligned_cols=197 Identities=13% Similarity=0.063 Sum_probs=150.6
Q ss_pred cEEEEeeCCCEEEEE-------------eCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 822 PCFALSKNDSYVMSA-------------SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
.+++++|||++++++ .++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d 160 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMD 160 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEE
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEE
Confidence 345666666665555 368999999998887777664 45678899999 88878777 68999999
Q ss_pred cccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC------------------------cEEEEeCCCCcccccccccc
Q 001248 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------------------------QLCVWSSDGWEKQKNRFLQI 944 (1114)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~------------------------~v~iwd~~~~~~~~~~~~~~ 944 (1114)
+.+++.+..+..+.. ...+.|+||++.|+..+.++ .|.+||+.+++.. .....
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~- 237 (337)
T 1pby_B 161 PEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR- 237 (337)
T ss_dssp TTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE-
T ss_pred CCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC-
Confidence 999998877765441 11347899998776554332 4689999886643 11111
Q ss_pred CCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEc
Q 001248 945 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1114)
Q Consensus 945 ~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~ 1024 (1114)
.+. ..+..++|+|||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+
T Consensus 238 --~~~---~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 238 --IMD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp --ECS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred --CCC---CceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 111 256789999999999988 79999999999988877653 346789999999999999999999999999
Q ss_pred CCCeeeEEeC
Q 001248 1025 ANLKLRCRIN 1034 (1114)
Q Consensus 1025 ~~~~~~~~~~ 1034 (1114)
.+++.+..+.
T Consensus 309 ~~~~~~~~~~ 318 (337)
T 1pby_B 309 ETLEKKGQVD 318 (337)
T ss_dssp TTCCEEEEEE
T ss_pred cCCcEEEEEE
Confidence 9999998876
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=3.9e-20 Score=206.13 Aligned_cols=271 Identities=13% Similarity=0.079 Sum_probs=199.7
Q ss_pred ceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCC-CccEEEEeeCCCEEEEEe--CCe
Q 001248 764 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS--GGK 840 (1114)
Q Consensus 764 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~-~v~~v~~s~d~~~l~~~~--dg~ 840 (1114)
+.+++++.++.|.+||+.. +..+.....+ +.. .+..++++|||++++++. ++.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~ 57 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK----------------------MAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSES 57 (337)
T ss_dssp EEEEEEETTTEEEEEETTT----------------------TEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTE
T ss_pred cEEEEcCCCCeEEEEECCC----------------------CcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCe
Confidence 3578888899999988652 2222211100 111 478899999998776554 689
Q ss_pred EEEEEcCCCccccccCCCC-----CCeEEEEEecCCCcEEEEEe------------CCCcEEEEEcccceEEEeeccccc
Q 001248 841 ISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNIIAIGM------------DDSSIQIYNVRVDEVKSKLKGHSK 903 (1114)
Q Consensus 841 i~iwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~la~g~------------~dg~v~iwd~~~~~~~~~l~~h~~ 903 (1114)
|.+||+.+++.+..+.... ..+..++|+| ++++|+++. .++.|++||+.+++.+..+.. ..
T Consensus 58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~ 135 (337)
T 1pby_B 58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR 135 (337)
T ss_dssp EEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred EEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence 9999999988876665321 2577899999 888888876 579999999999988777764 45
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe--CC--------
Q 001248 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ET-------- 973 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~--d~-------- 973 (1114)
.+.+++|+||+++|+++ ++.|.+||+.+++.... +. .+.. ...+.|+|||++++++. ++
T Consensus 136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~--~~--~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVED--KP--IQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEE--EC--STTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeee--ee--cccc-----CCCceeCCCccEEeeeccCCCceeeeeec
Confidence 68899999999988888 68899999998654221 11 1110 11237899998776532 22
Q ss_pred ---------------eEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcc
Q 001248 974 ---------------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1038 (1114)
Q Consensus 974 ---------------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~ 1038 (1114)
.|.+||+.+++.. ......+...+.+++|+|||++|+++ ++.|++||+.+++.+..+.
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---- 277 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP---- 277 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----
T ss_pred cccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec----
Confidence 4789999998876 44444566788999999999999988 7999999999999887765
Q ss_pred cCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcccC
Q 001248 1039 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1086 (1114)
Q Consensus 1039 ~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~ 1086 (1114)
.+. .+..++|+| |+++|++++.|+.|++||+.+++.....
T Consensus 278 ~~~-------~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 278 LPH-------SYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp CSS-------CCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred CCC-------ceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence 111 133799999 6888898999999999999998843333
No 146
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=2.6e-19 Score=200.95 Aligned_cols=248 Identities=10% Similarity=0.074 Sum_probs=181.9
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEec------CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEE
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV 426 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~------dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l 426 (1114)
........+..++|+|+|++++++... ++.|.+||..+++.+.... ....+..+
T Consensus 35 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~ 94 (353)
T 3vgz_A 35 LRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGA 94 (353)
T ss_dssp EEEEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSE
T ss_pred hhhhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceE
Confidence 334456778999999999975554433 6789999999988765311 12347789
Q ss_pred EEcCCCCeEEEE-eCCCeEEEEEccCCceeeeeEeeccccC---------CeeEEEecCCCCeeEEEEecCCCCEEEEeC
Q 001248 427 IWSPDGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVG---------GVNDIAFSHPNKQLCVITCGDDKTIKVWDA 496 (1114)
Q Consensus 427 ~~spdg~~las~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~---------~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~ 496 (1114)
+|+|||++++++ ..++.|.+||..+++.+.. +..+.. .+.+++|+|+++.+++...+.++.|.+||+
T Consensus 95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred EECCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence 999999966555 5579999999999886653 333322 278899999999633333256889999999
Q ss_pred CCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecC----CCCeeEEEEEecCCCeEEeee
Q 001248 497 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA----PGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 497 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
.+++.+..+..+...+..++|++ +++++++++.++.|.+||..+.+....+.. +...+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-------------- 235 (353)
T 3vgz_A 172 GNIKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFIN-------------- 235 (353)
T ss_dssp TTTEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEE--------------
T ss_pred CCCceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccce--------------
Confidence 99999888876666677788754 557899999999999999987665544433 2223334
Q ss_pred cccceeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEe-CCCcEEEEEccCC
Q 001248 573 RKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG 650 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~dg~i~iwd~~~~ 650 (1114)
++|+|+++++++++ .++.|.+||..+++.+..+.... ...++|+|+|++++++. .++.|.+||..++
T Consensus 236 -------~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 236 -------ISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp -------EEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred -------EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 44555555566655 45999999999999888887543 26799999999766655 6899999998776
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=1.4e-19 Score=202.43 Aligned_cols=248 Identities=12% Similarity=0.158 Sum_probs=168.7
Q ss_pred CCCCccEEEEeeCCCEEEEEe---CCeEEEEEcCCCc--cccccCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEcc
Q 001248 817 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVR 890 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~ 890 (1114)
+...+..++|+|||+.++++. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999999444443 3789999997665 3344444667789999999 888887777 78999999996
Q ss_pred c-c--eEEEeecc---------cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCccccccccccCCCCCCCCCCceE
Q 001248 891 V-D--EVKSKLKG---------HSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTR 957 (1114)
Q Consensus 891 ~-~--~~~~~l~~---------h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 957 (1114)
. + +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 3 2 33333321 12348889999999977777778999999998 433221111122222 24578
Q ss_pred EEEccCCcEEEEE--eCCeEEEEEcCC--Ccee--eeeecCCC----CcCeeEEEECCCCCEEE-EEEcCCeEEEEEcCC
Q 001248 958 VQFHQDQIHFLVV--HETQLAIFETTK--LECV--KQWVPRES----SAPITHATFSCDSQLVY-ACFLDATVCVFSAAN 1026 (1114)
Q Consensus 958 v~fspdg~~l~~~--~d~~i~iwd~~~--~~~~--~~~~~~~h----~~~v~~l~~s~dg~~l~-s~s~Dg~I~vwd~~~ 1026 (1114)
++|+|||++|+++ .++.+.+|++.. ++.. ..+..... ...+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999987773 578899999874 4432 22221111 14588999999999885 455689999999973
Q ss_pred -C--eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-CcEEEEec--cCCC
Q 001248 1027 -L--KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEP--LESE 1081 (1114)
Q Consensus 1027 -~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-g~v~vW~i--~~~~ 1081 (1114)
+ +.+..+.. .+ ..+..++|+| |+++|++++.+ +.|.+|++ .+++
T Consensus 272 ~g~~~~~~~~~~-----~~-----~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 272 DGHLTLIQQIST-----EG-----DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GGCEEEEEEEEC-----SS-----SCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCcEEEeEEEec-----CC-----CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 2 34433331 01 2244899999 68888877755 89999955 4455
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=1.7e-18 Score=198.23 Aligned_cols=315 Identities=14% Similarity=0.144 Sum_probs=200.2
Q ss_pred ccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC
Q 001248 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~ 830 (1114)
...+..+++++++..+++++.++ +++|+.......... ......+........ ..+...|.+++|+|+|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~v~~l~~spdg 104 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKP---GDDPNKIVDKVQGLL-------VPMKFPIHHLALSCDN 104 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCT---TCCTTCEEECCCCEE-------ECCSSCEEEEEECTTS
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccc---ccCcccccccCcccc-------ccCCCcccEEEEcCCC
Confidence 34578899999999999988887 888876432110000 000000000000000 1256789999999999
Q ss_pred CEEE----EEe-CCeEEEEEcCCC--------cc---ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE
Q 001248 831 SYVM----SAS-GGKISLFNMMTF--------KT---MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1114)
Q Consensus 831 ~~l~----~~~-dg~i~iwd~~~~--------~~---~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1114)
++|+ +++ |++|+|||+.++ +. +..+.+|...|.+++|+|+++++||+++.||+|++||+.++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 666 899999998765 11 3456778999999999995489999999999999999999887
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC-CCCCCCCceEEEEccCCcEEEE--Ee
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLV--VH 971 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~v~fspdg~~l~~--~~ 971 (1114)
+....+|...|++++|+|+|++|++|+.||+|++||++. +... .+..... .......+.+++|++++.++++ ..
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-cccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 777788999999999999999999999999999999983 2211 1111111 0011136899999999999877 24
Q ss_pred CC------eEEEEEcCCCcee--ee---eec-----CCCCcCeeEEEECCCCCEEEEEEcC-CeEEEEEcCCCe--e-eE
Q 001248 972 ET------QLAIFETTKLECV--KQ---WVP-----RESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLK--L-RC 1031 (1114)
Q Consensus 972 d~------~i~iwd~~~~~~~--~~---~~~-----~~h~~~v~~l~~s~dg~~l~s~s~D-g~I~vwd~~~~~--~-~~ 1031 (1114)
+| .+++|++.+.+.. .. +.. .+...+-..+.+-+|.+++++++.. +.|.|....... . ..
T Consensus 262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 43 3899999865311 11 110 0112222333444777887766643 346666543211 1 01
Q ss_pred EeC--CCcccCCCCCCCCccceEEEec--CCC------------CCeEEEEeCCCcEEEEeccC
Q 001248 1032 RIN--PSAYLPAGVSSSNVHPLVIAAH--PQE------------PNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1032 ~~~--~~~~~~~~~~~~~v~~~~~~~~--~~d------------~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.+. ....+|-........|+.+++. ..+ --.|.+-+.||.+..|.+-.
T Consensus 342 ~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 342 LLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp EECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred eccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 110 0112222212223444444432 222 14677888999999999976
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=1.2e-19 Score=197.72 Aligned_cols=233 Identities=13% Similarity=0.030 Sum_probs=171.1
Q ss_pred CCCCccEEEEeeCCCEEEEEeCCeEEEEEcCC-CccccccCCC-CCCeEEEEEecCCCcEEEEEe--CCCcEEEEEc--c
Q 001248 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPP-PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNV--R 890 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~-~~~~~~~~~~-~~~i~~l~~sp~d~~~la~g~--~dg~v~iwd~--~ 890 (1114)
|...+.+++|+|||++|++++++.|++||+.+ ++.......+ ...+.+++|+| ++++|++++ .++.+.||.+ .
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~ 118 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST 118 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence 67789999999999999999999999999998 8777666555 36789999999 899999988 3345555554 4
Q ss_pred cceEEEeecccccCeeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 891 VDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 891 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
+++ ...+..+. .+..++|+||+++|+ +++.|+.++||+++..... .. ....+. ..+..++|+|+|++|++
T Consensus 119 ~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~-~~~~~~---~~~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 119 GGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ET-RLTHGE---GRNDGPDYSPDGRWIYF 189 (297)
T ss_dssp CCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EE-ECCCSS---SCEEEEEECTTSSEEEE
T ss_pred CCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ce-EcccCC---CccccceECCCCCEEEE
Confidence 444 44454443 489999999999887 7888999999996532111 11 111121 36789999999998887
Q ss_pred -E-eCCeEEEEEcC-CCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----------CeEEEEEcCCCeeeEEeCC
Q 001248 970 -V-HETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINP 1035 (1114)
Q Consensus 970 -~-~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----------g~I~vwd~~~~~~~~~~~~ 1035 (1114)
+ .++.+.+|++. .+.....+. .|...+.+++|+|||++|++++.+ +.|++||+.+++......
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~- 266 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD- 266 (297)
T ss_dssp EECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-
T ss_pred EecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-
Confidence 4 47889999876 445555544 567789999999999999988876 569999999887643322
Q ss_pred CcccCCCCCCCCccceEEEecCCCCCeEEEEeCCC
Q 001248 1036 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1070 (1114)
Q Consensus 1036 ~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg 1070 (1114)
.. +| ...+. .++|+| |+++|++++.|.
T Consensus 267 ---~~-~~-~~~~~--~~~~sp-dg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 ---LF-GG-QGTMN--SPNWSP-DGDEFAYVRYFP 293 (297)
T ss_dssp ---EE-ES-TTTSC--SCCBCT-TSSEEEEEEECC
T ss_pred ---cC-CC-Ccccc--cceECC-CCCEEEEEEecc
Confidence 10 11 11144 688999 678888777654
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.83 E-value=6e-19 Score=192.31 Aligned_cols=240 Identities=15% Similarity=0.120 Sum_probs=170.3
Q ss_pred eeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCC-cceeEEeeeeeeccCCCCcccccccccCC-CCCeeEEEE
Q 001248 351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIW 428 (1114)
Q Consensus 351 ~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~V~~l~~ 428 (1114)
......|...|.+++|+|||++ |++++ ++.|++||+.+ ++... +..+| ...|.+++|
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK-------------------VDTGFATICNNDHGI 92 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE-------------------CCCTTCCCBCSCCEE
T ss_pred eeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE-------------------eccccccccccceEE
Confidence 4456668999999999999996 66665 88999999998 76543 23344 468999999
Q ss_pred cCCCCeEEEEe--CCCeEEEEEc--cCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC-CCccee
Q 001248 429 SPDGSLFGVAY--SRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQY 503 (1114)
Q Consensus 429 spdg~~las~~--~dg~i~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~ 503 (1114)
+|||++|++++ .++.+.||.+ .++. .. .+..+. .+.+++|+||++. ++++++.++.+++|++. .+....
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKNL-PSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSSS-SEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCCEE
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecCC-CccceEECCCCCE-EEEEECCCCceEEEEEECCCCcce
Confidence 99999999998 3455666655 4443 22 343333 4899999999995 34477888999999864 234456
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEe-cCCeEEEEEcC-CCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
.+..|...+.+++|++ ++.+++.++ .++.+.+|+++ .......+..+...+..+.|+|+|
T Consensus 167 ~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---------------- 228 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSG---------------- 228 (297)
T ss_dssp ECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTS----------------
T ss_pred EcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCC----------------
Confidence 6777888999999865 456666655 58999999987 334444444444444555555554
Q ss_pred ecCCCCEEEEEeCC-----------CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCC
Q 001248 582 FDTTKNRFLAAGDD-----------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640 (1114)
Q Consensus 582 ~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg 640 (1114)
++|++++.+ +.|++||+.+++.........+...+.+++|+|+|+.|++++.+.
T Consensus 229 -----~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 229 -----DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp -----SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred -----CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 467666654 679999998887644443222234688999999999998887653
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=4.4e-19 Score=219.79 Aligned_cols=285 Identities=9% Similarity=0.037 Sum_probs=188.6
Q ss_pred eEEEEEccCcceeeeccc---------CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEE
Q 001248 754 ISRLIFTNSGNAILALAS---------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 824 (1114)
Q Consensus 754 i~~l~~s~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v 824 (1114)
+.+++|||||++|+.++. ++.|++|++.. |..+.. .. ....+..+
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~----------------------g~~~~~--~~--l~~~~~~~ 115 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN----------------------GEFVRG--NE--LPRPIQYL 115 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT----------------------TEECCS--SC--CCSSBCCE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC----------------------Cccccc--ee--cCcccccc
Confidence 668899999999988876 67888887653 332100 00 12457889
Q ss_pred EEeeCCCEEEEEeCCeEEEEEcCCCcccccc-CCCCCCe-----------------EEEEEecCCCcEEEEEeCCC----
Q 001248 825 ALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAA-----------------TFLAFHPQDNNIIAIGMDDS---- 882 (1114)
Q Consensus 825 ~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i-----------------~~l~~sp~d~~~la~g~~dg---- 882 (1114)
+|||||++|+.+.++.|++|++.+++..+.. .++...| .+++||| ||+.||+++.|.
T Consensus 116 ~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~ 194 (719)
T 1z68_A 116 CWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIP 194 (719)
T ss_dssp EECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSC
T ss_pred eECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCc
Confidence 9999999999999999999999887765432 2222222 4899999 999999887652
Q ss_pred ------------------------------cEEEEEcccceEE--------EeecccccCeeEEEEcCCCCEEEEEeCCC
Q 001248 883 ------------------------------SIQIYNVRVDEVK--------SKLKGHSKRITGLAFSHALNVLVSSGADS 924 (1114)
Q Consensus 883 ------------------------------~v~iwd~~~~~~~--------~~l~~h~~~V~~l~~s~d~~~l~s~s~D~ 924 (1114)
.|++||+.+++.. ..+.+|...+.+++||||++++++....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~ 274 (719)
T 1z68_A 195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRV 274 (719)
T ss_dssp EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESS
T ss_pred eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccc
Confidence 7889999987642 22446888899999999988777754332
Q ss_pred ----cEEEEe----CCCCccccccccc-cCCCCCCCCCCce-----EEEEccCCcEEEE--E-eCC--eEEEEEcCCCce
Q 001248 925 ----QLCVWS----SDGWEKQKNRFLQ-IPTGRTPTAQSDT-----RVQFHQDQIHFLV--V-HET--QLAIFETTKLEC 985 (1114)
Q Consensus 925 ----~v~iwd----~~~~~~~~~~~~~-~~~~~~~~~~~i~-----~v~fspdg~~l~~--~-~d~--~i~iwd~~~~~~ 985 (1114)
.|.+|| +.+++... ... ...++. ..+. .++|+|||+.++. + .++ .|.+||+.+++.
T Consensus 275 ~~~~~l~~~d~~~~~~~g~~~~--~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~ 349 (719)
T 1z68_A 275 QNVSVLSICDFREDWQTWDCPK--TQEHIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA 349 (719)
T ss_dssp TTEEEEEEEEECSSSSSEECCG--GGEEEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC
T ss_pred cCeEEEEEEcccCCCCCCceEE--EEecccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce
Confidence 488899 77654322 110 001222 1233 7899999997655 3 333 688888877763
Q ss_pred eeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCC--Cee-eEEeCCCcccCCCCCCCCccceEEEecC
Q 001248 986 VKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAAN--LKL-RCRINPSAYLPAGVSSSNVHPLVIAAHP 1057 (1114)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~--~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1057 (1114)
..+. .+...+..+.++ |++.|+..+.+ +.+++|.+.. +.. ...+... +. ++ ...+. .+.|+|
T Consensus 350 -~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~--~~-~~-~~~~~--~~~~s~ 419 (719)
T 1z68_A 350 -IQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH--LR-KE-RCQYY--TASFSD 419 (719)
T ss_dssp -EECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT--TT-TT-TBCBE--EEEECG
T ss_pred -Eecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc--cC-CC-CCceE--EEEECC
Confidence 3333 345668888888 88888777665 7888888754 421 2222210 11 11 11133 688999
Q ss_pred CCCCeEE-EEeCC--CcEEEEeccCCC
Q 001248 1058 QEPNEFA-LGLSD--GGVHVFEPLESE 1081 (1114)
Q Consensus 1058 ~d~~~l~-s~~~D--g~v~vW~i~~~~ 1081 (1114)
|+++++ +++.+ ..+++|++.+++
T Consensus 420 -dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 420 -YAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp -GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred -CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 456655 44444 478899988776
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=6e-19 Score=218.60 Aligned_cols=334 Identities=11% Similarity=0.053 Sum_probs=219.2
Q ss_pred EEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC-CCCcCeEEEcCCCCEEEEEeC---------CCcEEEEEccC
Q 001248 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTN---------DNGIKILATSD 649 (1114)
Q Consensus 580 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~---------dg~i~iwd~~~ 649 (1114)
+.|+|++. ++..+.|+.|++||+.+++....+..+.. ...+.+++|||||++|++++. ++.|++||+.+
T Consensus 21 ~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 21 PNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred cEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 34566663 55556799999999999998777754321 013789999999999998876 67888888876
Q ss_pred CccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEE
Q 001248 650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW 729 (1114)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw 729 (1114)
+. .....
T Consensus 100 g~-~~~~~------------------------------------------------------------------------ 106 (719)
T 1z68_A 100 GE-FVRGN------------------------------------------------------------------------ 106 (719)
T ss_dssp TE-ECCSS------------------------------------------------------------------------
T ss_pred Cc-cccce------------------------------------------------------------------------
Confidence 62 10000
Q ss_pred EeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCcccc
Q 001248 730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809 (1114)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~ 809 (1114)
. -...+..++|||||+.|+.+. ++.|++|++..+.... +-. .+....
T Consensus 107 ------------~-------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~-----------l~~--~~~~~~ 153 (719)
T 1z68_A 107 ------------E-------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ-----------ITF--NGRENK 153 (719)
T ss_dssp ------------C-------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-----------CCC--CCBTTT
T ss_pred ------------e-------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE-----------Eec--CCCcCC
Confidence 0 012356789999999888875 6789998875432100 000 000000
Q ss_pred ccCCCCCCC---------CCccEEEEeeCCCEEEEEe-CC----------------------------------eEEEEE
Q 001248 810 NDVTDSNPE---------EAVPCFALSKNDSYVMSAS-GG----------------------------------KISLFN 845 (1114)
Q Consensus 810 ~~~~~~~~~---------~~v~~v~~s~d~~~l~~~~-dg----------------------------------~i~iwd 845 (1114)
.+. ++. ....+++|||||++|++++ |. .|++||
T Consensus 154 -v~~--g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 154 -IFN--GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp -EEE--SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred -eEc--ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 000 011 2235899999999999887 42 789999
Q ss_pred cCCCccc--------cccCCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEE----cccceEEEee----cccccCe
Q 001248 846 MMTFKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYN----VRVDEVKSKL----KGHSKRI 905 (1114)
Q Consensus 846 ~~~~~~~--------~~~~~~~~~i~~l~~sp~d~~~la~g~~d----g~v~iwd----~~~~~~~~~l----~~h~~~V 905 (1114)
+.+++.. ..+.+|...+..++||| |++++++.... ..|++|| +.++++...+ .+|...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred CCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 9987653 23446778899999999 78887775433 2488999 8888766655 4677777
Q ss_pred e-----EEEEcCCCCEEEE--EeCCC--cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeC---
Q 001248 906 T-----GLAFSHALNVLVS--SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--- 972 (1114)
Q Consensus 906 ~-----~l~~s~d~~~l~s--~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d--- 972 (1114)
. .++|+|||+.|+. ...++ .|.+|++.+++. .. ...+. ..+..+.++ +++.|+. +.+
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-----~~-lt~~~---~~v~~~~~~-d~~~i~~~~~~~~~ 379 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-----IQ-ITSGK---WEAINIFRV-TQDSLFYSSNEFEE 379 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-----EE-CSCSS---SCEEEEEEE-CSSEEEEEESCGGG
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-----Ee-cccCc---eEEEEEEEE-eCCEEEEEEecCCC
Confidence 7 8999999996654 44555 466677766431 11 11111 246677777 8888777 544
Q ss_pred --CeEEEEEcCC--Cce-eeeee--cCCCCcCeeEEEECCCCCEEEEEE-cC--CeEEEEEcCCCeeeEEeC
Q 001248 973 --TQLAIFETTK--LEC-VKQWV--PRESSAPITHATFSCDSQLVYACF-LD--ATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 973 --~~i~iwd~~~--~~~-~~~~~--~~~h~~~v~~l~~s~dg~~l~s~s-~D--g~I~vwd~~~~~~~~~~~ 1034 (1114)
+...+|.+.. +.. ...+. ..+|...+..+.|+||+++++..+ .+ ..+++||+.+++.+..+.
T Consensus 380 ~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 380 YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 6788887653 321 22222 123566788999999999877543 33 468999999988665554
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=1.5e-18 Score=194.05 Aligned_cols=279 Identities=13% Similarity=0.136 Sum_probs=183.1
Q ss_pred cCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeeccc---CceEEEEeecccccCCCCCccccccc
Q 001248 721 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS---NAIHLLWKWQRTERNSSGKATASVAP 797 (1114)
Q Consensus 721 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~ 797 (1114)
+.++.+.+|+++.... ....+.. ..+......++|+|+|+ +++++. ++.|++|++..+...
T Consensus 13 ~~~~~i~v~~~d~~tg--~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~----------- 76 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAK--TLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH----------- 76 (347)
T ss_dssp SSCCEEEEEEEETTTT--EEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-----------
T ss_pred CCCCCEEEEEEcCCCC--eEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-----------
Confidence 3456788888875221 1111111 11345677899999999 665554 589999987532110
Q ss_pred cccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCC-Cc--cccccCC---------CCCCeE
Q 001248 798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK--TMATFMP---------PPPAAT 863 (1114)
Q Consensus 798 ~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~-~~--~~~~~~~---------~~~~i~ 863 (1114)
.+.. +. .+...+..++|+|||++|++++ ++.|.+|++.. +. .+..+.. ....+.
T Consensus 77 ---------~~~~-~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~ 144 (347)
T 3hfq_A 77 ---------KLNT-VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH 144 (347)
T ss_dssp ---------EEEE-EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE
T ss_pred ---------Eeee-ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce
Confidence 0100 00 1456688999999999888887 68999999962 22 2222221 123488
Q ss_pred EEEEecCCCcEEEEEeCCCcEEEEEcc-cceEE--Eeeccc-ccCeeEEEEcCCCCEEEE-EeCCCcEEEEeCCC--Ccc
Q 001248 864 FLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVK--SKLKGH-SKRITGLAFSHALNVLVS-SGADSQLCVWSSDG--WEK 936 (1114)
Q Consensus 864 ~l~~sp~d~~~la~g~~dg~v~iwd~~-~~~~~--~~l~~h-~~~V~~l~~s~d~~~l~s-~s~D~~v~iwd~~~--~~~ 936 (1114)
+++|+| +++++++...++.|++|++. +++.. ..+..+ ...+..++|+|||++|++ ...++.|.+|+++. ++.
T Consensus 145 ~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~ 223 (347)
T 3hfq_A 145 YTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF 223 (347)
T ss_dssp EEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce
Confidence 999999 77777777788999999998 55433 222222 235788999999996665 56788999999874 332
Q ss_pred ccccccccCCCCCCCCCCceEEEEccCCcEEEE-E-eCCeEEEEEcCCC---ceeeeeecCCCCcCeeEEEECCCCCEEE
Q 001248 937 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTKL---ECVKQWVPRESSAPITHATFSCDSQLVY 1011 (1114)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~-~d~~i~iwd~~~~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1011 (1114)
..................+..++|+|||++|++ . .++.|.+|++... +.+..+. .+...+..++|+|||++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~ 301 (347)
T 3hfq_A 224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVV 301 (347)
T ss_dssp EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEE
T ss_pred EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEE
Confidence 111112222211111134788999999998866 3 5789999998732 3333333 4456789999999999998
Q ss_pred EEEcC-CeEEEE--EcCCCeee
Q 001248 1012 ACFLD-ATVCVF--SAANLKLR 1030 (1114)
Q Consensus 1012 s~s~D-g~I~vw--d~~~~~~~ 1030 (1114)
+++.+ +.|.+| |..+|++.
T Consensus 302 v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 302 VVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEETTTTEEEEEEECTTTCCEE
T ss_pred EEEcCCCcEEEEEEeCCCCeEE
Confidence 88865 899999 55677765
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=6.2e-18 Score=193.58 Aligned_cols=259 Identities=13% Similarity=0.076 Sum_probs=170.1
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE-
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG- 436 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la- 436 (1114)
...++.+++++++.+ +++|+.++ |+||+......... ...+.. ............|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNK---PGDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCC---TTCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhcc---cccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 346899999999995 88888787 99988643211000 000000 000001111234667899999999999999
Q ss_pred ---EEeCCCeEEEEEccCC--------ceeeeeEeeccccCCeeEEEecCC-CCeeEEEEecCCCCEEEEeCCCCcceeE
Q 001248 437 ---VAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI 504 (1114)
Q Consensus 437 ---s~~~dg~i~iwd~~~~--------~~~~~~~~l~~h~~~V~~v~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 504 (1114)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.|++|++||++++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999865 223334467789999999999998 55 799999999999999999987777
Q ss_pred eeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCC-------CeeEEEEEecCCCeEEeeecccce
Q 001248 505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-------RWCTTMAYSADGTRTYQGFRKRSL 577 (1114)
Q Consensus 505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-------~~v~~~~~s~~g~~~~~~~~~~~v 577 (1114)
..+|...|.+++|+++ |++|++|+.||.|++||.+ ......+..+. ..+.+++|++++
T Consensus 188 ~~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~------------ 252 (434)
T 2oit_A 188 TLPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY------------ 252 (434)
T ss_dssp EECGGGCEEEEEECTT--SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT------------
T ss_pred ccCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc------------
Confidence 7789999999998764 6899999999999999998 33333333221 145555555544
Q ss_pred eEEEecCCCCEEEE-EeCCC------eEEEEECCCcc-----eEEEeccC-----CCCCCcCeEEEcCCCCEEEEEeC-C
Q 001248 578 GVVQFDTTKNRFLA-AGDDF------SIKFWDMDSVQ-----LLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTN-D 639 (1114)
Q Consensus 578 ~~~~~~~~~~~l~~-~~~dg------~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~-d 639 (1114)
.++++ ...+| .+++|++.... ....+... ....+...+.+-++.+++++++. .
T Consensus 253 ---------~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s 323 (434)
T 2oit_A 253 ---------VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS 323 (434)
T ss_dssp ---------EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTC
T ss_pred ---------eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCC
Confidence 34443 33343 38999987642 11222111 11111122333367677666554 4
Q ss_pred CcEEEEEcc
Q 001248 640 NGIKILATS 648 (1114)
Q Consensus 640 g~i~iwd~~ 648 (1114)
+.|.++...
T Consensus 324 ~dv~vl~~~ 332 (434)
T 2oit_A 324 TEVSILARQ 332 (434)
T ss_dssp SBCEEEEEC
T ss_pred CceeEEEec
Confidence 557776643
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=2e-18 Score=193.42 Aligned_cols=241 Identities=13% Similarity=0.089 Sum_probs=180.7
Q ss_pred EEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCC-CCeEEEEEecCCCcE-EEEEeCCCcEEEEEcccceEEEeec
Q 001248 823 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNI-IAIGMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~-la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
.++++++++++++++ +++|++||..+++.+..+..+. ..+..++|+| ++++ ++++..++.|++||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 345677888888888 8999999999998887776443 2578999999 7765 4556678999999999998877765
Q ss_pred cc------ccCeeEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEc
Q 001248 900 GH------SKRITGLAFSHALNVLVSSGAD------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 961 (1114)
Q Consensus 900 ~h------~~~V~~l~~s~d~~~l~s~s~D------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fs 961 (1114)
.+ ...+.+++|+|||++|++++.+ +.|.+||+.+++.... +...... ..+.+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~----~~~~~~~~s 156 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--VRTFPMP----RQVYLMRAA 156 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--SEEEECC----SSCCCEEEC
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce--eeeccCC----CcccceeEC
Confidence 32 2347899999999999998866 8999999987543221 1111111 247889999
Q ss_pred cCCcEEEEEeCCeEEEEEcCCCceeeeeecCC------------------------------------------------
Q 001248 962 QDQIHFLVVHETQLAIFETTKLECVKQWVPRE------------------------------------------------ 993 (1114)
Q Consensus 962 pdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------------------------------ 993 (1114)
|||+ ++++ ++.|.+||..+++.+..+....
T Consensus 157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 9999 5553 4459999999988776554321
Q ss_pred ------------------CCcCeeEEEECC-CCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEE
Q 001248 994 ------------------SSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1054 (1114)
Q Consensus 994 ------------------h~~~v~~l~~s~-dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1054 (1114)
+...+.+++|+| ||++|+++ ++.|++||+.+++.+..+. .+.. + ..++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~-----~--~~~~ 301 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----LDHT-----Y--YCVA 301 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----CSSC-----C--CEEE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----CCCC-----c--cceE
Confidence 011456778889 99999888 8899999999999887765 1111 3 3799
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeccCCCCcccC
Q 001248 1055 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1086 (1114)
Q Consensus 1055 ~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~~~ 1086 (1114)
|+| |+++|++++.++.|++||+.+++..-..
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence 999 6788888889999999999998843333
No 156
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=7.7e-18 Score=208.30 Aligned_cols=234 Identities=13% Similarity=0.099 Sum_probs=158.6
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCC-----CeeEEEEcCCCC
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS 433 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~ 433 (1114)
.....++|+|||++ ++++ ||+|++||+.+++... ++.+|.. ....++|||||+
T Consensus 17 ~~~~~~~w~~dg~~-~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 17 LKLYSLRWISDHEY-LYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CCCCCEEECSSSEE-EEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccccccEECCCCcE-EEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCC
Confidence 34568999999984 7775 9999999999998654 2344432 334589999999
Q ss_pred eEEEEeCC---------CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee-
Q 001248 434 LFGVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY- 503 (1114)
Q Consensus 434 ~las~~~d---------g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~- 503 (1114)
+|++++.+ +.+.+||+.+++.. .+..|.+.+..++|||||+. |+.+ .|+.|++||+.+++..+
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~l 147 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRI 147 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEEC
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEE
Confidence 99999876 56679999998754 36678889999999999994 5555 46899999998887544
Q ss_pred EeeccccCE-----------------EEEeeccCCCceEEEEEecCCe-EEEEEcCCCCCeeeecCCCCeeEEEEEecCC
Q 001248 504 IFEGHEAPV-----------------YSVCPHHKENIQFIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565 (1114)
Q Consensus 504 ~~~~h~~~v-----------------~~~~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g 565 (1114)
+..++...+ ..+.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|
T Consensus 148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G 222 (740)
T 4a5s_A 148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG 222 (740)
T ss_dssp CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence 223333333 23566 566788888876544 8888764321110 122344555555555
Q ss_pred CeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC---cc--eEEEeccC----CCCCCcCeEEEcCCCCEEEEE
Q 001248 566 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQ--LLTSIDAD----GGLPASPRIRFNKDGCLLAVS 636 (1114)
Q Consensus 566 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~--~~~~~~~~----~~~~~v~~~~~s~d~~~l~~~ 636 (1114)
. . .....|++||+.+ ++ ....+... ++...+..++|+|||+.++..
T Consensus 223 ~---------------------~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 223 A---------------------V----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp S---------------------C----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred C---------------------c----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 3 1 1223789999998 73 22333321 123457899999999977665
Q ss_pred eC----CCcEEEEEccCCc
Q 001248 637 TN----DNGIKILATSDGI 651 (1114)
Q Consensus 637 ~~----dg~i~iwd~~~~~ 651 (1114)
.. +..|.+||+.++.
T Consensus 278 ~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EESSTTEEEEEEEEEETTT
T ss_pred eCCCCCEEEEEEEECCCCc
Confidence 43 2368999988873
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=1.4e-18 Score=209.35 Aligned_cols=234 Identities=10% Similarity=0.047 Sum_probs=168.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEec-CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCC-CCeeEEEEcCCCCe
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTN-VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSL 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~-dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~ 434 (1114)
+..+|++++|||||++ ||+++. ||++.||++.+++... +..|. ..|..++|||| ++
T Consensus 20 ~~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~ 77 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RV 77 (582)
T ss_dssp HHSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EE
T ss_pred hccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eE
Confidence 3567999999999997 555554 9999999997765543 34444 68999999999 77
Q ss_pred EEEEeC---CCeEEEEEccC--CceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccc
Q 001248 435 FGVAYS---RHIVQIYSYHG--GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE 509 (1114)
Q Consensus 435 las~~~---dg~i~iwd~~~--~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 509 (1114)
+++++. +....||.+.. ..... .+..+. .+...+|+|||+.+++++++.++ +.+||+.+++.......+
T Consensus 78 l~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~- 151 (582)
T 3o4h_A 78 ILVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLP- 151 (582)
T ss_dssp EEEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEES-
T ss_pred EEEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCC-
Confidence 777765 45567766654 22222 232222 34567999999875666666555 459999988765544433
Q ss_pred cCEEEEeeccCCCceEEEEEecC----CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 510 APVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
. .+++| ++||++|++++.+ +.|++||+.+++.. .+..+...+..++|+|||+
T Consensus 152 ~--~~~~~--spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~------------------- 207 (582)
T 3o4h_A 152 G--FGFVS--DIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK------------------- 207 (582)
T ss_dssp S--CEEEE--EEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC-------------------
T ss_pred C--ceEEE--CCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC-------------------
Confidence 3 56665 4567899988877 78999999876544 4555556666666666665
Q ss_pred CCEEEEEeCCC--eEEEEECCCcceEEEeccCCCCCCcCeEE--------EcCCCCEEEEEeCCCcEEEEEc
Q 001248 586 KNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGLPASPRIR--------FNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 586 ~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~--------~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
+|+++..++ .|++||+.+++.. .+..+ ...+..++ |+|||.++++++.++.+++|++
T Consensus 208 --~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 208 --VTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp --EEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred --EEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 677777788 8999999998877 55443 23456667 9999999999999999999997
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=8.2e-17 Score=181.02 Aligned_cols=166 Identities=10% Similarity=0.084 Sum_probs=116.1
Q ss_pred CCCeEEEEEecCCCcEEEE-EeCCCcEEEEEcccce-------E------EEeecccccCeeEEEEcCCCCEEEEEe-CC
Q 001248 859 PPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDE-------V------KSKLKGHSKRITGLAFSHALNVLVSSG-AD 923 (1114)
Q Consensus 859 ~~~i~~l~~sp~d~~~la~-g~~dg~v~iwd~~~~~-------~------~~~l~~h~~~V~~l~~s~d~~~l~s~s-~D 923 (1114)
...+.+++|+| ++++|++ ...++.|++|++.... + ......+...+.+++|+|||++|++++ .+
T Consensus 154 ~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 232 (361)
T 3scy_A 154 MPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG 232 (361)
T ss_dssp SCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred CCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence 34578899999 8875554 4458899999987533 1 111223445678999999999887777 68
Q ss_pred CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-e--CCeEEEEEcC--CCc--eeeeeecCCCCc
Q 001248 924 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H--ETQLAIFETT--KLE--CVKQWVPRESSA 996 (1114)
Q Consensus 924 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~--d~~i~iwd~~--~~~--~~~~~~~~~h~~ 996 (1114)
+.|.+|++.+++......+.....+. .....++|+|||++|+++ . ++.|.+|++. +++ .+..+. . ..
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~ 306 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GI 306 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SS
T ss_pred CeEEEEEecCCceEEeEEEecCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CC
Confidence 99999999865432222222222221 245799999999999774 3 4789999985 444 333333 2 45
Q ss_pred CeeEEEECCCCCEEEEEE-cCCeEEEEEc--CCCeeeE
Q 001248 997 PITHATFSCDSQLVYACF-LDATVCVFSA--ANLKLRC 1031 (1114)
Q Consensus 997 ~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~--~~~~~~~ 1031 (1114)
.+.+++|+|||++|++++ .++.|.+|++ .++++..
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 307 HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 788999999999998888 5789999654 5776653
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=1.6e-17 Score=205.44 Aligned_cols=365 Identities=12% Similarity=0.048 Sum_probs=222.6
Q ss_pred CeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEe---eccCCCceEEEEEecC---------Ce
Q 001248 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC---PHHKENIQFIFSTALD---------GK 534 (1114)
Q Consensus 467 ~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~---~~~~~~~~~l~s~~~d---------~~ 534 (1114)
...+++|+|||+ +++++ |++|++||+.++++...+.+|......++ +..++||++|+.++.+ +.
T Consensus 18 ~~~~~~w~~dg~--~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISDHE--YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSSSE--EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCCCc--EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 466899999998 67776 89999999999998888888765432221 1235677899988876 55
Q ss_pred EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q 001248 535 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 535 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
+.+||+.+++.. .+..+...+...+|||||+ .|+.+ .++.|++|+..+++... +..
T Consensus 94 ~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~---------------------~la~~-~~~~i~~~~~~~~~~~~-lt~ 149 (740)
T 4a5s_A 94 YDIYDLNKRQLI-TEERIPNNTQWVTWSPVGH---------------------KLAYV-WNNDIYVKIEPNLPSYR-ITW 149 (740)
T ss_dssp EEEEETTTTEEC-CSSCCCTTEEEEEECSSTT---------------------CEEEE-ETTEEEEESSTTSCCEE-CCS
T ss_pred EEEEECCCCcEE-EcccCCCcceeeEECCCCC---------------------EEEEE-ECCeEEEEECCCCceEE-EcC
Confidence 679999876533 3334444566666666665 56665 46899999998887543 222
Q ss_pred CCCC-----------------CCcCeEEEcCCCCEEEEEeCCCc-EEEEEccCCccceeeccccccccccCCCCCCCCcc
Q 001248 615 DGGL-----------------PASPRIRFNKDGCLLAVSTNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTIS 676 (1114)
Q Consensus 615 ~~~~-----------------~~v~~~~~s~d~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1114)
.++. .....+.|||||+.|+.++.|.+ +.+|++......
T Consensus 150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~----------------------- 206 (740)
T 4a5s_A 150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE----------------------- 206 (740)
T ss_dssp CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST-----------------------
T ss_pred CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC-----------------------
Confidence 2211 11234778888887777654433 555543211000
Q ss_pred chhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEE
Q 001248 677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR 756 (1114)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 756 (1114)
. .+...+..
T Consensus 207 -------------------------------------------------------------~----------~~~~~~~~ 215 (740)
T 4a5s_A 207 -------------------------------------------------------------S----------LQYPKTVR 215 (740)
T ss_dssp -------------------------------------------------------------T----------CSSCEEEE
T ss_pred -------------------------------------------------------------C----------CCCCccee
Confidence 0 01111222
Q ss_pred EEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEE
Q 001248 757 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 836 (1114)
Q Consensus 757 l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~ 836 (1114)
+. +.+.|.. .
T Consensus 216 ~~-------------------------------------------------------------------yp~~G~~---~ 225 (740)
T 4a5s_A 216 VP-------------------------------------------------------------------YPKAGAV---N 225 (740)
T ss_dssp EE-------------------------------------------------------------------CCBTTSC---C
T ss_pred ec-------------------------------------------------------------------CCCCcCc---C
Confidence 22 2222211 0
Q ss_pred eCCeEEEEEcCC---Cc--cccccC------CCCCCeEEEEEecCCCcEEEEEeC----CCcEEEEEcccce----EEE-
Q 001248 837 SGGKISLFNMMT---FK--TMATFM------PPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYNVRVDE----VKS- 896 (1114)
Q Consensus 837 ~dg~i~iwd~~~---~~--~~~~~~------~~~~~i~~l~~sp~d~~~la~g~~----dg~v~iwd~~~~~----~~~- 896 (1114)
...+|++||+.+ ++ ....+. ++...+..++|+| ||++++.... +..|++||+.+++ +..
T Consensus 226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~ 304 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA 304 (740)
T ss_dssp CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG
T ss_pred CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE
Confidence 012577788777 63 122232 3677799999999 8887665533 3479999999887 322
Q ss_pred -ee--cccccCee-----EEEEcCCCCEEE-EEeC-C--CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC
Q 001248 897 -KL--KGHSKRIT-----GLAFSHALNVLV-SSGA-D--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 897 -~l--~~h~~~V~-----~l~~s~d~~~l~-s~s~-D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
.+ .+|...|. .++|+|||+.|+ ..+. + ..|.+|++.+++. ..+..+.. .+..+. .+|+
T Consensus 305 ~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~~----~v~~~~-~~d~ 374 (740)
T 4a5s_A 305 RQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGTW----EVIGIE-ALTS 374 (740)
T ss_dssp GCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSSS----CEEEEE-EECS
T ss_pred EEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCCE----EEEEEE-EEeC
Confidence 22 44665554 789999999887 6654 3 3588888887543 22222221 344433 3557
Q ss_pred cEEEE-EeC-----C--eEEEEEcCCCceeeeeec--CCCCcCeeEEEECCCCCEEEEEEcC---CeEEEEEcCCCeeeE
Q 001248 965 IHFLV-VHE-----T--QLAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRC 1031 (1114)
Q Consensus 965 ~~l~~-~~d-----~--~i~iwd~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~s~D---g~I~vwd~~~~~~~~ 1031 (1114)
+.|+. +.. + .|...++.++.....+.. .+....+..+.||||+++++..... ..+.+++..+++.+.
T Consensus 375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~ 454 (740)
T 4a5s_A 375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLR 454 (740)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEE
T ss_pred CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEE
Confidence 77766 433 2 455556655443222321 1234578899999999987765544 368899998887765
Q ss_pred EeC
Q 001248 1032 RIN 1034 (1114)
Q Consensus 1032 ~~~ 1034 (1114)
.+.
T Consensus 455 ~l~ 457 (740)
T 4a5s_A 455 VLE 457 (740)
T ss_dssp EEE
T ss_pred Eec
Confidence 543
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=2.8e-18 Score=206.62 Aligned_cols=271 Identities=10% Similarity=0.055 Sum_probs=186.0
Q ss_pred ccCCeeEEEecCCCCeeEEEEecC-CCCEEEEeCCCCcceeEeeccc-cCEEEEeeccCCCceEEEEEec---CCeEEEE
Q 001248 464 HVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTAL---DGKIKAW 538 (1114)
Q Consensus 464 h~~~V~~v~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~---d~~i~~w 538 (1114)
+..+|++++|+|||+ .|++++. |++++||++.+++. ..+..|. ..+..++|++ | +++++++. +....+|
T Consensus 20 ~~~~~~~~~~~~DG~--~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGD--KLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGV--G-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp HHSCEEEEEEEETTT--EEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTC--S-EEEEEEECSTTSCCEEEE
T ss_pred hccchheeecCCCCC--eEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCC--C-eEEEEeccCCCCcceEEE
Confidence 356899999999999 5777665 99999999866654 4555555 6888889874 4 67777765 5556676
Q ss_pred EcCC--CCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC
Q 001248 539 LYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG 616 (1114)
Q Consensus 539 d~~~--~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 616 (1114)
.++. ......+... ..+...+|+|+|+. .+++.+.++.+.+||+.+++.......+.
T Consensus 94 ~~~~~~~g~~~~l~~~-~~~~~~~~s~dg~~--------------------~~~~s~~~~~~~l~d~~~g~~~~l~~~~~ 152 (582)
T 3o4h_A 94 KVNTSRPGEEQRLEAV-KPMRILSGVDTGEA--------------------VVFTGATEDRVALYALDGGGLRELARLPG 152 (582)
T ss_dssp EEETTSTTCCEECTTS-CSBEEEEEEECSSC--------------------EEEEEECSSCEEEEEEETTEEEEEEEESS
T ss_pred EEeccCCCccccccCC-CCceeeeeCCCCCe--------------------EEEEecCCCCceEEEccCCcEEEeecCCC
Confidence 6544 3322222221 12234455555542 23344444555599999887666554331
Q ss_pred CCCCcCeEEEcCCCCEEEEEeCC----CcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccc
Q 001248 617 GLPASPRIRFNKDGCLLAVSTND----NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 692 (1114)
Q Consensus 617 ~~~~v~~~~~s~d~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1114)
.+++|+|||++|++++.+ +.|++||+.++. .. .+.
T Consensus 153 -----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~-~l~---------------------------------- 191 (582)
T 3o4h_A 153 -----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LR-VFD---------------------------------- 191 (582)
T ss_dssp -----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CE-EEC----------------------------------
T ss_pred -----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ce-Eee----------------------------------
Confidence 789999999999988766 567777765551 00 000
Q ss_pred cccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccC
Q 001248 693 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 772 (1114)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 772 (1114)
T Consensus 192 -------------------------------------------------------------------------------- 191 (582)
T 3o4h_A 192 -------------------------------------------------------------------------------- 191 (582)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CC--eEEEEEcCCC
Q 001248 773 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--KISLFNMMTF 849 (1114)
Q Consensus 773 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg--~i~iwd~~~~ 849 (1114)
.+...+..++|||||++|+++. ++ .|++||+.++
T Consensus 192 -------------------------------------------~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 192 -------------------------------------------SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp -------------------------------------------CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred -------------------------------------------cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence 0333445677777777777555 56 7888888887
Q ss_pred ccccccCCCCCCeEEEE--------EecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEe
Q 001248 850 KTMATFMPPPPAATFLA--------FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 921 (1114)
Q Consensus 850 ~~~~~~~~~~~~i~~l~--------~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s 921 (1114)
+.. .+..+...+..++ |+| ||.++++++.||++++|++ ++... .+.+.|.+++|+ |++++++++
T Consensus 229 ~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s 300 (582)
T 3o4h_A 229 SVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHT 300 (582)
T ss_dssp CEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred cEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEc
Confidence 776 6666766676667 999 7799999999999999999 66554 344678999999 999999988
Q ss_pred CCCc---EEEEeCCC
Q 001248 922 ADSQ---LCVWSSDG 933 (1114)
Q Consensus 922 ~D~~---v~iwd~~~ 933 (1114)
.+.+ +.+|+..+
T Consensus 301 ~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 301 SLSTPPRIVSLPSGE 315 (582)
T ss_dssp ETTEEEEEEEETTCC
T ss_pred CCCCCCeEEEEcCCC
Confidence 8754 66666654
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=1.4e-17 Score=187.34 Aligned_cols=250 Identities=10% Similarity=0.081 Sum_probs=169.6
Q ss_pred CCccEEEEeeCCCEEEEEeCCeEEEEEcC-CCccccccCC-CCCCeEEEEEecCCCc--EEEEEe-------------CC
Q 001248 819 EAVPCFALSKNDSYVMSASGGKISLFNMM-TFKTMATFMP-PPPAATFLAFHPQDNN--IIAIGM-------------DD 881 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~sp~d~~--~la~g~-------------~d 881 (1114)
..+..++++|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| +|+ +++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46788999999999998884499999997 7665433221 112356689999 888 455553 68
Q ss_pred CcEEEEEcc-cceEEEeec----ccccCeeEEEEcCCCCEEEEEeC-CCcEEEEeCC-CCccccccccccCCCCCCCCCC
Q 001248 882 SSIQIYNVR-VDEVKSKLK----GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQS 954 (1114)
Q Consensus 882 g~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s~-D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 954 (1114)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|+++ +++......+.... + ...
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GDH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TCC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CCC
Confidence 999999997 466544443 24567999999999998887764 6789999998 55432111111111 0 125
Q ss_pred ceEEEEccCCcEEEEE--eCCeEEEEEcC--CCceee---eee-cC----CCCc------CeeEEE-ECCCCCEEEEEEc
Q 001248 955 DTRVQFHQDQIHFLVV--HETQLAIFETT--KLECVK---QWV-PR----ESSA------PITHAT-FSCDSQLVYACFL 1015 (1114)
Q Consensus 955 i~~v~fspdg~~l~~~--~d~~i~iwd~~--~~~~~~---~~~-~~----~h~~------~v~~l~-~s~dg~~l~s~s~ 1015 (1114)
+..++|+|||++|+++ .++.|.+|+.. +++... .+. .. +|.. .+..++ |+|||++|++++.
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 7899999999999884 36789999765 555421 121 11 2222 588999 9999999987765
Q ss_pred CC------eEEEEEcC-CCeeeEEeCCCcccCCCCCCCCccceEEEecCC--CCCeEEEEeCC-CcEEEEeccCC
Q 001248 1016 DA------TVCVFSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSD-GGVHVFEPLES 1080 (1114)
Q Consensus 1016 Dg------~I~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--d~~~l~s~~~D-g~v~vW~i~~~ 1080 (1114)
+. .|.+|+++ ++++..... ..+ .+ . ..+..++|+|. |+++|++++.+ ++|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~---~~~-~~-~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLF---LSP-TP-T--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEE---EEE-CS-S--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeee---eee-cC-C--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 33 89999996 676543211 000 00 0 11225788885 58899988865 99999999775
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=7.1e-17 Score=181.56 Aligned_cols=243 Identities=14% Similarity=0.147 Sum_probs=164.5
Q ss_pred CCCCccEEEEeeCCCEEEEEe-C----CeEEEEEcCC--Ccc--ccccCCCCCCeEEEEEecCCCcEEEEE-eCCCcEEE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-G----GKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIG-MDDSSIQI 886 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-d----g~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~la~g-~~dg~v~i 886 (1114)
+...+..++|+|||++|++++ + +.|.+|++.. ++. +.....+......+++ ++++|+++ ..++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence 345677899999999999888 4 6999998865 332 2333434556777777 44555544 47889999
Q ss_pred EEcccceEEEee------cc--------cccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcc------ccc----cc
Q 001248 887 YNVRVDEVKSKL------KG--------HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEK------QKN----RF 941 (1114)
Q Consensus 887 wd~~~~~~~~~l------~~--------h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~~~~------~~~----~~ 941 (1114)
|++.....+..+ .+ +...+.+++|+|||++|++++ .++.|.+|+++.... ... ..
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 999754322211 11 223457899999999776555 588999999886432 100 11
Q ss_pred cccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCcee--eeee-cCCCCcCeeEEEECCCCCEEEEEEcC
Q 001248 942 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECV--KQWV-PRESSAPITHATFSCDSQLVYACFLD 1016 (1114)
Q Consensus 942 ~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~~~--~~~~-~~~h~~~v~~l~~s~dg~~l~s~s~D 1016 (1114)
.....+ ..+..++|+|||++++++ .++.|.+|++.+++.. ..+. ...+...+..++|+|||++|++++.+
T Consensus 205 ~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 205 FKVAPG-----SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp EECCTT-----CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred eecCCC-----CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence 111111 246889999999988874 4789999999877542 2222 12334567899999999999777765
Q ss_pred --CeEEEEEcC--CCee--eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe-CCCcEEEEeccC
Q 001248 1017 --ATVCVFSAA--NLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLE 1079 (1114)
Q Consensus 1017 --g~I~vwd~~--~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~-~Dg~v~vW~i~~ 1079 (1114)
+.|.+|+++ ++++ +..+. .+ ..+..++|+| |+++|++++ .++.|.+|++..
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~------~g-----~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQL------TG-----IHPRNFIITP-NGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEE------CS-----SCCCEEEECT-TSCEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEEEcCCCCcEEEeeEec------CC-----CCCceEEECC-CCCEEEEEECCCCCEEEEEEEC
Confidence 899999996 4553 33332 12 2344899999 688888777 679999976654
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.78 E-value=5.3e-17 Score=181.68 Aligned_cols=261 Identities=11% Similarity=0.081 Sum_probs=181.0
Q ss_pred eEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE-EeC
Q 001248 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-AYS 440 (1114)
Q Consensus 362 ~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~~~ 440 (1114)
+.++++++++ ++++++.+++|.+||+.+++.+.... .+....+..++|+|||+++++ +..
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCV------------------MPDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEE------------------CSSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEe------------------cCCCCCCceeEECCCCCEEEEEeCC
Confidence 3567888877 58999999999999999987765311 111225788999999997654 456
Q ss_pred CCeEEEEEccCCceeeeeEeeccc-----cCCeeEEEecCCCCeeEEEEecCC------------CCEEEEeCCCCcce-
Q 001248 441 RHIVQIYSYHGGDEVRQHLEIDAH-----VGGVNDIAFSHPNKQLCVITCGDD------------KTIKVWDATNGAKQ- 502 (1114)
Q Consensus 441 dg~i~iwd~~~~~~~~~~~~l~~h-----~~~V~~v~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~~- 502 (1114)
++.|.+||+.+++..... .+ ++ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++..
T Consensus 64 ~~~i~~~d~~t~~~~~~~-~~-~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTFHA-NL-SSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp TTEEEEEETTTTEEEEEE-ES-CCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred CCcEEEEeCCCCcEEEEE-Ec-ccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 899999999998765422 11 22 23478999999999 56666644 89999999985543
Q ss_pred --eEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCC---------------------C---ee
Q 001248 503 --YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------------------R---WC 556 (1114)
Q Consensus 503 --~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------------------~---~v 556 (1114)
..+. +...+.+++|++ +|+ +++++ +.|.+||..+.+....+.... . ..
T Consensus 140 ~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 140 PVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp CSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred eeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 3444 334577777754 556 55544 349999998877665554332 0 23
Q ss_pred EEEEEecCCCeE---------Ee--------------eecccceeEEEecC-CCCEEEEEeCCCeEEEEECCCcceEEEe
Q 001248 557 TTMAYSADGTRT---------YQ--------------GFRKRSLGVVQFDT-TKNRFLAAGDDFSIKFWDMDSVQLLTSI 612 (1114)
Q Consensus 557 ~~~~~s~~g~~~---------~~--------------~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 612 (1114)
..+++++++... +. .........++++| ++++++++ ++.|++||+.+++.+..+
T Consensus 214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~ 291 (349)
T 1jmx_B 214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAA 291 (349)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred eeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEE
Confidence 345555443110 00 00122456678899 99998888 899999999999988887
Q ss_pred ccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeec
Q 001248 613 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 613 ~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 657 (1114)
.... .+.+++|+|+|++|++++.++.|.+||..++ +.+..+
T Consensus 292 ~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~ 332 (349)
T 1jmx_B 292 NLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNI 332 (349)
T ss_dssp ECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEE
T ss_pred cCCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeee
Confidence 6432 3679999999999888888999999999887 444444
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=4.9e-16 Score=173.43 Aligned_cols=222 Identities=13% Similarity=0.086 Sum_probs=156.0
Q ss_pred CCccEEEEeeCCCEEEEEe---CCeEEEEEcCCCccccc-cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ce
Q 001248 819 EAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DE 893 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-~~ 893 (1114)
.....++++|||++|+++. +++|.+||+.+++.+.+ +... ....+.+.|.+...+++.+.||.+.+|++.. ++
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence 3456789999999998875 47899999999888776 5532 2233567784557788889999999999865 55
Q ss_pred EEE------eecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccC------CCCCCCCCCceEEEEc
Q 001248 894 VKS------KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFH 961 (1114)
Q Consensus 894 ~~~------~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~v~fs 961 (1114)
... .+..+..++ .+.+++++..++..+.++.|.++|+.............. .+..+ .....++|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~g~~~~a~~ 262 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP--GGYNLVGLH 262 (361)
T ss_dssp EEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE--CCSSCEEEE
T ss_pred EeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc--CCeeEEEEe
Confidence 441 222223332 345578888888888999999999976432211111000 00000 122347999
Q ss_pred cCCcEEEEE-e-----------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCC--
Q 001248 962 QDQIHFLVV-H-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL-- 1027 (1114)
Q Consensus 962 pdg~~l~~~-~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~-- 1027 (1114)
||++.++++ . ...|.+||+.+++.+..+.. +. +.+++|+|||++|++++. +.|.|||..++
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l 337 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP 337 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSC
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcc
Confidence 998888774 3 24799999999999998874 23 999999999999998886 99999999999
Q ss_pred eeeEEeCCCcccCCCCCCCCccceEEEecCCCCC
Q 001248 1028 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1061 (1114)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1061 (1114)
+.+.++. ..| -.|..++++| ||.
T Consensus 338 ~~~~~i~-----~~G-----~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 338 KLLRTIE-----GAA-----EASLQVQFHP-VGG 360 (361)
T ss_dssp EEEEEET-----TSC-----SSEEEEEECC-CSC
T ss_pred eeeEEec-----cCC-----CCcEEEEecC-CCC
Confidence 9888863 112 3355788998 454
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.75 E-value=1.9e-16 Score=180.13 Aligned_cols=252 Identities=13% Similarity=0.002 Sum_probs=161.5
Q ss_pred eEeccCCCCceE-----EEEcCCCCeEEEEEecCC--cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCee
Q 001248 352 TRTLNQGSSPMS-----MDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN 424 (1114)
Q Consensus 352 ~~~~~h~~~v~~-----v~~spdg~~ll~tg~~dg--~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~ 424 (1114)
.+...|...+.. ++|||||++|++++..+| .|.+||+.+++... +..+|...+.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~ 84 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTF 84 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSS
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCcc
Confidence 333336555555 899999998555544467 48889999887654 3455666666
Q ss_pred EEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEE--ecCCCCeeEEEE------------------
Q 001248 425 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVIT------------------ 484 (1114)
Q Consensus 425 ~l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~--~s~d~~~~~l~s------------------ 484 (1114)
.++|||||++|+.++.++.|++||+.+++... .+..+...+.... ++++++ +++.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhh
Confidence 78899999999999999999999999987553 2334444454443 489998 4442
Q ss_pred ----ecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecC------CeEEEEEcCCCCCeeeecCCC-
Q 001248 485 ----CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPG- 553 (1114)
Q Consensus 485 ----~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~- 553 (1114)
.+.+..|.+||+.+++. ..+..+...+..++|++. +|..|+....+ ..|.++|..............
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 237 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEG 237 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTT
T ss_pred hhhccCCcceEEEEECCCCce-EEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCC
Confidence 23457899999998864 455556777888887651 55777776653 367777776543332222221
Q ss_pred CeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe-C-C---CeEEEEECCCcceEEEeccCC--CC-CCcCeEE
Q 001248 554 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-D-D---FSIKFWDMDSVQLLTSIDADG--GL-PASPRIR 625 (1114)
Q Consensus 554 ~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-d---g~i~iwd~~~~~~~~~~~~~~--~~-~~v~~~~ 625 (1114)
..+....|+|||+ .|+..+ . + ..|++||+.+++......... +. .....+.
T Consensus 238 ~~~~~~~~spdg~---------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 238 ESCTHEFWVPDGS---------------------ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp EEEEEEEECTTSS---------------------CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred cccccceECCCCC---------------------EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence 2355556666665 443332 2 2 249999999887543322221 00 0123458
Q ss_pred EcCCCCEEEEE---------eCCCcEEEEEccCC
Q 001248 626 FNKDGCLLAVS---------TNDNGIKILATSDG 650 (1114)
Q Consensus 626 ~s~d~~~l~~~---------~~dg~i~iwd~~~~ 650 (1114)
|+|||+.|+.. ..+..|.+||+.++
T Consensus 297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp EEEEECCC------------CCCCEEEEEETTTT
T ss_pred EccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 99999988754 44568999998776
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.73 E-value=5.6e-16 Score=176.28 Aligned_cols=207 Identities=10% Similarity=0.034 Sum_probs=139.1
Q ss_pred ccCCCCCeeE-----EEEcCCCCeEEEEeC-CC--eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC
Q 001248 416 VKDPGVSVNR-----VIWSPDGSLFGVAYS-RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487 (1114)
Q Consensus 416 ~~~h~~~V~~-----l~~spdg~~las~~~-dg--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~ 487 (1114)
+..|...+.. .+|||||++|+.++. ++ .|.+||+.+++... ...+|...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5566655555 899999999999987 66 48888998887554 3445665666789999999 6788888
Q ss_pred CCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEe----------------------cCCeEEEEEcCCCCC
Q 001248 488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA----------------------LDGKIKAWLYDNLGS 545 (1114)
Q Consensus 488 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------------------~d~~i~~wd~~~~~~ 545 (1114)
++.|++||+.+++....+..+...+....|..++++.+++... .+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8899999999998877777666666555554567777776432 346788899887543
Q ss_pred eeeecCCCCeeEEEEEec-CCCeEEeeecccceeEEEecCCCCEEEEEeC------CCeEEEEECCCcceEEEeccCCCC
Q 001248 546 RVDYEAPGRWCTTMAYSA-DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD------DFSIKFWDMDSVQLLTSIDADGGL 618 (1114)
Q Consensus 546 ~~~~~~~~~~v~~~~~s~-~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~ 618 (1114)
. .+..+...+..+.|+| ||+ .++.... ...|.++|...+.. ..+..+...
T Consensus 181 ~-~l~~~~~~~~~~~~sp~dg~---------------------~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~ 237 (388)
T 3pe7_A 181 T-VILQENQWLGHPIYRPYDDS---------------------TVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEG 237 (388)
T ss_dssp E-EEEEESSCEEEEEEETTEEE---------------------EEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTT
T ss_pred E-EeecCCccccccEECCCCCC---------------------EEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCC
Confidence 3 2222333445555555 554 5555554 34788888766544 333322211
Q ss_pred CCcCeEEEcCCCCEEEEEeC-CC----cEEEEEccCC
Q 001248 619 PASPRIRFNKDGCLLAVSTN-DN----GIKILATSDG 650 (1114)
Q Consensus 619 ~~v~~~~~s~d~~~l~~~~~-dg----~i~iwd~~~~ 650 (1114)
..+..++|+|||+.|+..+. ++ .|.+||+.++
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 23667899999997765443 22 2888887766
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=2.7e-15 Score=167.37 Aligned_cols=228 Identities=9% Similarity=0.008 Sum_probs=138.9
Q ss_pred CCCeEEEEE-----ecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe----
Q 001248 369 VQQTLLLVG-----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY---- 439 (1114)
Q Consensus 369 dg~~ll~tg-----~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---- 439 (1114)
++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|||||++|++++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~ 72 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHE 72 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEeccc
Confidence 566544443 2378999999999887652 2333334 899999999999986
Q ss_pred ------CCCeEEEEEccCCceeeeeEeecc---ccCCeeEEEecCCCCeeEEEEec--CCCCEEEEeCCCCcceeE-eec
Q 001248 440 ------SRHIVQIYSYHGGDEVRQHLEIDA---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYI-FEG 507 (1114)
Q Consensus 440 ------~dg~i~iwd~~~~~~~~~~~~l~~---h~~~V~~v~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~-~~~ 507 (1114)
.++.|.+||..+++.+..+..... +......++|+|||++ |+++. .+++|.+||+.+++.+.+ +..
T Consensus 73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~--l~v~n~~~~~~v~v~d~~~~~~~~~~i~~ 150 (361)
T 2oiz_A 73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF--IVLQNASPATSIGIVDVAKGDYVEDVTAA 150 (361)
T ss_dssp TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE--EEEEEESSSEEEEEEETTTTEEEEEEGGG
T ss_pred ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE--EEEECCCCCCeEEEEECCCCcEEEEEecC
Confidence 267799999998887664322211 2345778999999995 44443 468999999999988877 553
Q ss_pred cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
. + ...+.+.+... ..+++.+.||.+.+|++.......... +. ...+.+... ...+.+++++.
T Consensus 151 ~-~-~~~v~~~p~~~-~~~~~~~~dg~~~~v~~~~~g~~~~~~-~~----~~~~~~~~~----------~~~~~~~~~g~ 212 (361)
T 2oiz_A 151 A-G-CWSVIPQPNRP-RSFMTICGDGGLLTINLGEDGKVASQS-RS----KQMFSVKDD----------PIFIAPALDKD 212 (361)
T ss_dssp T-T-EEEEEECTTSS-SEEEEEETTSSEEEEEECTTSSEEEEE-EC----CCCSCTTTS----------CBCSCCEECSS
T ss_pred C-C-cceeEEcCCCC-eeEEEECCCCcEEEEEECCCCcEeeec-cc----cceEcCCCC----------ceEEEecccCC
Confidence 2 1 22233444432 578888999999999986533322100 00 001111111 01112234455
Q ss_pred EEEEEeCCCeEEEEECCCcce--EEEeccCC--------CCCCcCeEEEcCCCCEEEEEe
Q 001248 588 RFLAAGDDFSIKFWDMDSVQL--LTSIDADG--------GLPASPRIRFNKDGCLLAVST 637 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~--------~~~~v~~~~~s~d~~~l~~~~ 637 (1114)
.++..+.++.|.++|+..+.. ...+.... .......++|+|+++.++++.
T Consensus 213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~ 272 (361)
T 2oiz_A 213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFM 272 (361)
T ss_dssp EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEE
Confidence 667777889999999875532 22221110 001122378888877776654
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.70 E-value=2.5e-15 Score=168.85 Aligned_cols=258 Identities=9% Similarity=0.021 Sum_probs=163.7
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcC-CcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCe-
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVG-SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL- 434 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~- 434 (1114)
+...+..++|+|||++ |++++.+ .|.+|++. +++...... ...+ +.+.+++|+|||++
T Consensus 38 ~~~~~~~~a~spdg~~-l~~~~~~-~v~~~~~~~~g~~~~~~~-----------------~~~~-g~~~~~~~spdg~~l 97 (365)
T 1jof_A 38 QDEPISWMTFDHERKN-IYGAAMK-KWSSFAVKSPTEIVHEAS-----------------HPIG-GHPRANDADTNTRAI 97 (365)
T ss_dssp TTCCCSEEEECTTSSE-EEEEEBT-EEEEEEEEETTEEEEEEE-----------------EECC-SSGGGGCTTSCCEEE
T ss_pred CCCCCcEEEECCCCCE-EEEEccc-eEEEEEECCCCCEEEeeE-----------------eecC-CCCccEEECCCCCEE
Confidence 4457899999999996 6677766 99999997 775533110 1111 13566899999995
Q ss_pred -EEEEe-------------CCCeEEEEEcc-CCceeeeeEeec-cccCCeeEEEecCCCCeeEEEEe-cCCCCEEEEeCC
Q 001248 435 -FGVAY-------------SRHIVQIYSYH-GGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDAT 497 (1114)
Q Consensus 435 -las~~-------------~dg~i~iwd~~-~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~-~~d~~i~iwd~~ 497 (1114)
+++++ .++.+.+|++. .++.......+. .+...+.+++|+|||+. ++++ ..++.|++||+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~--l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 98 FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY--LYSADLTANKLWTHRKL 175 (365)
T ss_dssp EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE--EEEEETTTTEEEEEEEC
T ss_pred EEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE--EEEEcCCCCEEEEEEEC
Confidence 45553 68999999997 455433222221 24567999999999994 4444 446799999998
Q ss_pred -CCcce--eEee--ccccCEEEEeeccCCCceEEEEEec-CCeEEEEEcCC--CCCeeeecCCCCeeEEEEEecCCCeEE
Q 001248 498 -NGAKQ--YIFE--GHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 498 -~~~~~--~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~-d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
+++.. ..+. .|...+..++|+ ++|+++++++. ++.|.+|+++. +...... ..+...+.+.
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~s--pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~-------~~~~~~~~~~--- 243 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMH--PTGNYLYALMEAGNRICEYVIDPATHMPVYTH-------HSFPLIPPGI--- 243 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-------EEEESSCTTC---
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEEC--CCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc-------ceEEcCCCCc---
Confidence 77653 2333 245678888875 45677777664 78999998764 2211100 0011111100
Q ss_pred eeecc-----cceeEEE-ecCCCCEEEEEeCC-C-----eEEEEECC-CcceEEE---eccCCCCCCcCeEEEcC---CC
Q 001248 570 QGFRK-----RSLGVVQ-FDTTKNRFLAAGDD-F-----SIKFWDMD-SVQLLTS---IDADGGLPASPRIRFNK---DG 630 (1114)
Q Consensus 570 ~~~~~-----~~v~~~~-~~~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~~~~s~---d~ 630 (1114)
.++.. .....++ |+|+|++|+++..+ + .|.+|++. +++.... ...+ ......++|+| ||
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSD 321 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCT
T ss_pred CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCC
Confidence 00000 0234455 66666677665532 2 89999986 5665432 2222 22467899999 89
Q ss_pred CEEEEEeCC-CcEEEEEccCC
Q 001248 631 CLLAVSTND-NGIKILATSDG 650 (1114)
Q Consensus 631 ~~l~~~~~d-g~i~iwd~~~~ 650 (1114)
++|++++.+ +.|.+|++...
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 999998764 89999998765
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=3.8e-15 Score=164.41 Aligned_cols=252 Identities=13% Similarity=0.083 Sum_probs=184.7
Q ss_pred CCCccEEEEeeCCCEEEEEe-C------------------------CeEEEEEcCCCccccccC-CCCCCeEEEEEecCC
Q 001248 818 EEAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMATFM-PPPPAATFLAFHPQD 871 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~-d------------------------g~i~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d 871 (1114)
-..+.+++++++|+++++.. + ++|.+||..+++.+..+. .+-.....++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 45689999999999998887 4 379999998888776554 3445789999999 8
Q ss_pred CcEEEEEeCCCcEEEEEcccce-EEEee---------cccccCeeEEEEcC-CCCEEEEEe-CCCcEEEEeCCCCccccc
Q 001248 872 NNIIAIGMDDSSIQIYNVRVDE-VKSKL---------KGHSKRITGLAFSH-ALNVLVSSG-ADSQLCVWSSDGWEKQKN 939 (1114)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-d~~~l~s~s-~D~~v~iwd~~~~~~~~~ 939 (1114)
++++++...++.|++||..... .+..+ .++.....+|+|+| ++.++++.+ .++.|++|+.+. +....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 8899988889999999986542 44544 34556789999999 788888886 699999999554 22111
Q ss_pred cccccCCCC---CCCCCCceEEEEccC-CcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECC------CCC
Q 001248 940 RFLQIPTGR---TPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC------DSQ 1008 (1114)
Q Consensus 940 ~~~~~~~~~---~~~~~~i~~v~fspd-g~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~------dg~ 1008 (1114)
......+. .........++++|+ |.++++ ..++.|++|+..+++.+..+....+...+.+++|+| +|+
T Consensus 181 -~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 181 -WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp -ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred -eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence 00000000 001124689999999 666566 367899999999999998887667778899999999 333
Q ss_pred EEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCC
Q 001248 1009 LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1009 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
..++...+..|++|+..+++.+..+... .+ ..-.|..++++| |++++++...++.|++|++...
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~---~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPV----RK---HFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCS----SS---CCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCC----CC---ccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 2222334458999999999999887521 11 113356899999 6788888899999999998754
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=2.7e-15 Score=171.05 Aligned_cols=189 Identities=11% Similarity=0.072 Sum_probs=124.8
Q ss_pred EeeCCCEEEEE------eCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC------CcEEEEEcccce
Q 001248 826 LSKNDSYVMSA------SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDE 893 (1114)
Q Consensus 826 ~s~d~~~l~~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d------g~v~iwd~~~~~ 893 (1114)
++|+++.++.. .+..|.+||+.+++..... .+...+..++|+|+++..|+..+.+ ..|++||+.+++
T Consensus 149 ~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 149 WQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp CCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred cCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 45667666543 2467999999887654433 3566789999999556666665543 368889987665
Q ss_pred EEEeeccc--ccCeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc-CCc
Q 001248 894 VKSKLKGH--SKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQI 965 (1114)
Q Consensus 894 ~~~~l~~h--~~~V~~l~~s~d~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp-dg~ 965 (1114)
.. .+..+ ...+..++|+|||++|+.++.+ +.|.+||+.+++... +.... ... +.|+| ||+
T Consensus 228 ~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~---l~~~~-------~~~-~~~s~~dg~ 295 (396)
T 3c5m_A 228 VR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE---VMVMP-------PCS-HLMSNFDGS 295 (396)
T ss_dssp CE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE---EEECC-------SEE-EEEECSSSS
T ss_pred ee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE---eeeCC-------CCC-CCccCCCCc
Confidence 33 33333 2357889999999988877654 449999998765322 11111 122 89999 999
Q ss_pred EEEEE-----------------eCCeEEEEEcCCCceeeeeecCCCCc-----------CeeEEEECCCCCEEEEEEc-C
Q 001248 966 HFLVV-----------------HETQLAIFETTKLECVKQWVPRESSA-----------PITHATFSCDSQLVYACFL-D 1016 (1114)
Q Consensus 966 ~l~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~h~~-----------~v~~l~~s~dg~~l~s~s~-D 1016 (1114)
+++++ .+..|.+||+.+++... +. .|.. .+..++|+|||++|+.++. +
T Consensus 296 ~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~ 372 (396)
T 3c5m_A 296 LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LC--KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE 372 (396)
T ss_dssp EEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred eEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-cc--CCCCccccccccccCCCCCceEccCCCeEEEEecCC
Confidence 88873 23689999998887543 22 2222 2567899999999887765 4
Q ss_pred Ce--EEEEEcCCCeee
Q 001248 1017 AT--VCVFSAANLKLR 1030 (1114)
Q Consensus 1017 g~--I~vwd~~~~~~~ 1030 (1114)
+. |+++++.+++..
T Consensus 373 ~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 373 GVPAIYIADVPESYKH 388 (396)
T ss_dssp SSCEEEEEECCTTCC-
T ss_pred CCceEEEEEEcccccc
Confidence 54 555555555443
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=1.8e-14 Score=155.88 Aligned_cols=243 Identities=11% Similarity=0.119 Sum_probs=176.8
Q ss_pred CCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccC------CCCCCeEEEEEecCCCcEEEEEeC-CCcEEEEE
Q 001248 817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM------PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN 888 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~------~~~~~i~~l~~sp~d~~~la~g~~-dg~v~iwd 888 (1114)
+-..+.+++++++++++++.. ++.|.+||.. ++.+..+. ++...+..+++++.+++++++... ++.|++||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 456688999999999888776 8999999987 55555443 233568999995327777776643 88999999
Q ss_pred cccceEEEeec-ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 889 VRVDEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 889 ~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
.+++.+..+. .+...+.+++++++|+++++...++.|.+|+....... .... .++ ...+..++++++|+++
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~---~~~~-~~~---~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH---KFGC-SKH---LEFPNGVVVNDKQEIF 178 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE---EEEC-TTT---CSSEEEEEECSSSEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEE---EeCC-CCc---cCCcEEEEECCCCCEE
Confidence 5677666664 34567899999999998888888899999997642211 1111 111 1357899999999977
Q ss_pred EEE-eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC-eEEEEEcCCCeeeEEeCCCcccCCCCCC
Q 001248 968 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYLPAGVSS 1045 (1114)
Q Consensus 968 ~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg-~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
++. .++.|.+||. +++.+..+...++...+..++++++|+++++...++ .|.+||. +++.+..+.. ..
T Consensus 179 v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~----~~---- 248 (286)
T 1q7f_A 179 ISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES----KV---- 248 (286)
T ss_dssp EEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE----SS----
T ss_pred EEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc----cC----
Confidence 774 6889999997 456666665444456889999999999888887776 9999995 5666666541 11
Q ss_pred CCccceEEEecCCCCCeEEEEeCCCcEEEEeccCC
Q 001248 1046 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1046 ~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
....+..++++| +++++++ +.|++|++|++...
T Consensus 249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 112355899999 6776666 67999999998653
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.66 E-value=3.2e-14 Score=157.04 Aligned_cols=251 Identities=12% Similarity=0.118 Sum_probs=184.2
Q ss_pred CCCceEEEEcCCCCeEEEEEecC------------------------CcEEEEEcCCcceeEEeeeeeeccCCCCccccc
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNV------------------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 413 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~d------------------------g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~ 413 (1114)
-+.|.+++++|+|+ ++++.+.+ ++|.+||..+++.+..
T Consensus 23 l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~----------------- 84 (329)
T 3fvz_A 23 PGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS----------------- 84 (329)
T ss_dssp CSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-----------------
T ss_pred cCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-----------------
Confidence 36689999999998 57777766 4799999988876542
Q ss_pred ccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEccCCc-eeeeeEee---------ccccCCeeEEEecC-CCCeeEE
Q 001248 414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEI---------DAHVGGVNDIAFSH-PNKQLCV 482 (1114)
Q Consensus 414 ~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~~~~-~~~~~~~l---------~~h~~~V~~v~~s~-d~~~~~l 482 (1114)
.-.++-.....++++|+|+++++...++.|++||..... .+. .+ .++-.....++|+| ++. ++
T Consensus 85 -~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--ly 158 (329)
T 3fvz_A 85 -SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VF 158 (329)
T ss_dssp -ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EE
T ss_pred -cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EE
Confidence 122444578999999999988888889999999986542 232 23 24455789999999 666 67
Q ss_pred EEec-CCCCEEEEeCCCCcceeEeec----------cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec-
Q 001248 483 ITCG-DDKTIKVWDATNGAKQYIFEG----------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE- 550 (1114)
Q Consensus 483 ~s~~-~d~~i~iwd~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~- 550 (1114)
++.+ .++.|++|| .+|+.+..+.. +-.....+++.++ .+.++++...++.|++||..+++....+.
T Consensus 159 v~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~ 236 (329)
T 3fvz_A 159 VSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKH 236 (329)
T ss_dssp EEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEec
Confidence 7775 689999999 67887777643 2234788887643 15788888889999999998766665553
Q ss_pred -CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEecc-CCCCCCcCeEEEcC
Q 001248 551 -APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNK 628 (1114)
Q Consensus 551 -~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~ 628 (1114)
.....+..++++| +. .+..+++.+++...+..|++|+..+++.+..+.. ..+......++++|
T Consensus 237 ~~~~~~~~~~~~~p-g~--------------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~ 301 (329)
T 3fvz_A 237 ASFGRNVFAISYIP-GF--------------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE 301 (329)
T ss_dssp TTTTTCEEEEEEET-TE--------------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred cccCCCcceeeecC-CE--------------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence 3345666777777 32 1122333344455677999999999999888742 22344578999999
Q ss_pred CCCEEEEEeCCCcEEEEEccC
Q 001248 629 DGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 629 d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
+|.++++...++.|++|++..
T Consensus 302 dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 302 DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TSEEEEEESSSCCEEEEEEEE
T ss_pred CCCEEEEECCCCEEEEEeCCc
Confidence 998888888899999999764
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.66 E-value=4e-13 Score=157.21 Aligned_cols=234 Identities=16% Similarity=0.121 Sum_probs=158.7
Q ss_pred CeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEEEEcc
Q 001248 371 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH 450 (1114)
Q Consensus 371 ~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~iwd~~ 450 (1114)
.+++++...+++|.++|..+++.+... . ....+..++|||||+++.+++.|+.|.+||+.
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i-------------------~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVL-------------------D-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEE-------------------E-CSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEE-------------------e-CCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 346788888999999999999887631 1 12357799999999999999999999999996
Q ss_pred --CCceeeeeEeeccccCCeeEEEec----CCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc----------cc-CEE
Q 001248 451 --GGDEVRQHLEIDAHVGGVNDIAFS----HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH----------EA-PVY 513 (1114)
Q Consensus 451 --~~~~~~~~~~l~~h~~~V~~v~~s----~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h----------~~-~v~ 513 (1114)
+++.+. ++... .....++|+ |||++ ++++...+++|.++|..+.+.+.++... .. .+.
T Consensus 227 ~~t~~~v~---~i~~G-~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva 301 (567)
T 1qks_A 227 MKEPTTVA---EIKIG-SEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 301 (567)
T ss_dssp SSSCCEEE---EEECC-SEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred CCCCcEeE---EEecC-CCCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence 666554 33322 235799999 69996 4555566799999999999988876522 12 566
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
.+..++.. ..++++...+|.|.++|......... ..+ +.+. ....+.|+|++++++++.
T Consensus 302 ~i~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v--------~~i---~~~~---------~~~d~~~~pdgr~~~va~ 360 (567)
T 1qks_A 302 AILASHYR-PEFIVNVKETGKILLVDYTDLNNLKT--------TEI---SAER---------FLHDGGLDGSHRYFITAA 360 (567)
T ss_dssp EEEECSSS-SEEEEEETTTTEEEEEETTCSSEEEE--------EEE---ECCS---------SEEEEEECTTSCEEEEEE
T ss_pred EEEEcCCC-CEEEEEecCCCeEEEEecCCCcccee--------eee---eccc---------cccCceECCCCCEEEEEe
Confidence 66655432 35677777789999999876432211 110 1111 223345666666776655
Q ss_pred -CCCeEEEEECCCcceEEEecc-CCCCCCcCeEE-EcCCCCEEE-EEe-CCCcEEEEEccCC
Q 001248 594 -DDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIR-FNKDGCLLA-VST-NDNGIKILATSDG 650 (1114)
Q Consensus 594 -~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~-~s~d~~~l~-~~~-~dg~i~iwd~~~~ 650 (1114)
.++.|.++|..+++.+..+.. .....+-.... ++|++..+. ++. .++.|.++|..++
T Consensus 361 ~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 361 NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred CCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 689999999999998887765 22111223344 478754444 443 4578999987653
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.66 E-value=3.6e-15 Score=170.07 Aligned_cols=238 Identities=13% Similarity=-0.006 Sum_probs=153.1
Q ss_pred ceEEEEcCCCCeEEEEEecCC--cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 361 PMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg--~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
+.+++|||||++|+++...++ .|.+||+.+++... +..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEEE
Confidence 788999999998555554433 68888998876543 122222233448899999999999
Q ss_pred eCCCeEEEEEccCCceeeeeEeeccccCCeeE-------------------EEecCCCCeeEEEEe-----cCCCCEEEE
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND-------------------IAFSHPNKQLCVITC-----GDDKTIKVW 494 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------v~~s~d~~~~~l~s~-----~~d~~i~iw 494 (1114)
+.++.|.+||+.+++... ....+...... ++|+|+++. ++.+ ..+..|++|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 999999999999886443 22223332222 357888874 3332 456789999
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecC------CeEEEEEcCCCCCeeeecCC-CCeeEEEEEecCCCe
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGTR 567 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~ 567 (1114)
|+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+............ ...+..+.|+|+|+
T Consensus 174 d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~- 250 (396)
T 3c5m_A 174 DIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGS- 250 (396)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSS-
T ss_pred ECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCC-
Confidence 99988765444 46677888888652 34556655543 35788887654332222211 12344555555554
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCC-----CeEEEEECCCcceEEEeccCCCCCCcCeEEEcC-CCCEEEEEeC---
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN--- 638 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~--- 638 (1114)
+|+.++.+ +.|++||+.+++......... .. +.|+| ||+++++++.
T Consensus 251 --------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p 305 (396)
T 3c5m_A 251 --------------------AMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAP 305 (396)
T ss_dssp --------------------CEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC-
T ss_pred --------------------EEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcc
Confidence 55555432 459999998887654433221 22 89999 9998887652
Q ss_pred -------------CCcEEEEEccCC
Q 001248 639 -------------DNGIKILATSDG 650 (1114)
Q Consensus 639 -------------dg~i~iwd~~~~ 650 (1114)
++.|.+||..++
T Consensus 306 ~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 306 VDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp ---------CCCCCCEEEEEETTTT
T ss_pred eeeccccccccCCCCcEEEEecccC
Confidence 367888887665
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=9.6e-15 Score=178.95 Aligned_cols=334 Identities=9% Similarity=0.002 Sum_probs=199.2
Q ss_pred eeccccCCeeEEEecCCCCeeEEEEe--cCCCCEEEEeCCCCcceeEeeccccCEE---------EEeeccCCCceE-EE
Q 001248 460 EIDAHVGGVNDIAFSHPNKQLCVITC--GDDKTIKVWDATNGAKQYIFEGHEAPVY---------SVCPHHKENIQF-IF 527 (1114)
Q Consensus 460 ~l~~h~~~V~~v~~s~d~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~h~~~v~---------~~~~~~~~~~~~-l~ 527 (1114)
.+.+|...|..++|+++.- ++++. +.++...||....+.....+..|...+. ...|+.++||+. |+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 3567899999999997644 67777 6688899999765666677777766655 555554577777 66
Q ss_pred EEec-CCeEEEEEcC--CCCCeeeecC-----CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC----
Q 001248 528 STAL-DGKIKAWLYD--NLGSRVDYEA-----PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---- 595 (1114)
Q Consensus 528 s~~~-d~~i~~wd~~--~~~~~~~~~~-----~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 595 (1114)
..+. +..|.+|++. .......+.. +...+..++|+|||+ .|++++.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~---------------------~l~~~~~~~~~~ 154 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERG---------------------EVWCMAEEFTGE 154 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTT---------------------EEEEEEEEECSS
T ss_pred EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCC---------------------EEEEEEecccCC
Confidence 5544 4556666654 1023333333 233455555555554 67776655
Q ss_pred ------CeEEEEECCC------cceEEEec-cCCCCCCcCeEEEcCCCCEEEEEeCCC--------cEEEEEcc-CCcc-
Q 001248 596 ------FSIKFWDMDS------VQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDN--------GIKILATS-DGIR- 652 (1114)
Q Consensus 596 ------g~i~iwd~~~------~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~dg--------~i~iwd~~-~~~~- 652 (1114)
..|++||+.+ ++.. .+. .+ ...+..++|||||++|+.++.++ .|++||+. ++..
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~ 231 (662)
T 3azo_A 155 GPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA 231 (662)
T ss_dssp STTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred CCCCceeEEEEEECCCCccccCCcee-EEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence 5899999988 5543 333 22 23578899999999999877553 57777776 3310
Q ss_pred ceeeccccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEec
Q 001248 653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT 732 (1114)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~ 732 (1114)
....+.
T Consensus 232 ~~~~l~-------------------------------------------------------------------------- 237 (662)
T 3azo_A 232 DTRTLL-------------------------------------------------------------------------- 237 (662)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred ccEEeC--------------------------------------------------------------------------
Confidence 000000
Q ss_pred cCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccC
Q 001248 733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812 (1114)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~ 812 (1114)
..+...+..+.|+|||+.++++..++...||.+. ..++..... .
T Consensus 238 ---------------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~--------------------~~~~~~~~l-~ 281 (662)
T 3azo_A 238 ---------------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD--------------------PATGAATQL-C 281 (662)
T ss_dssp ---------------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC--------------------TTTCCEEES-S
T ss_pred ---------------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEE--------------------CCCCceeec-c
Confidence 0134567889999999977777777744444332 111211110 0
Q ss_pred CCC------CCCCCccEEEEeeCCCEEEEEeCCeEEEE--EcCCCccccccCCCCCCeEEE-EEecCCCcEEEEEeCCC-
Q 001248 813 TDS------NPEEAVPCFALSKNDSYVMSASGGKISLF--NMMTFKTMATFMPPPPAATFL-AFHPQDNNIIAIGMDDS- 882 (1114)
Q Consensus 813 ~~~------~~~~~v~~v~~s~d~~~l~~~~dg~i~iw--d~~~~~~~~~~~~~~~~i~~l-~~sp~d~~~la~g~~dg- 882 (1114)
... .-.-.+..+++++++++++++..+.++|| |+.+++ +..+..+...+..+ +++. +.-++++++.+.
T Consensus 282 ~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~ 359 (662)
T 3azo_A 282 RREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTA 359 (662)
T ss_dssp CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEE
T ss_pred cccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCC
Confidence 000 00111467899999999888866777777 555554 56777777777777 5544 333444445554
Q ss_pred -cEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 883 -SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 883 -~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
.|++||+.+++.......|...+....+++.....+.+..+..|..|-+
T Consensus 360 ~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 360 YEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred CEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 5666677677755444555444444444444333443333345655543
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=6.5e-13 Score=155.43 Aligned_cols=333 Identities=14% Similarity=0.093 Sum_probs=212.2
Q ss_pred CCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcC--CCCCeeeecCC
Q 001248 475 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD--NLGSRVDYEAP 552 (1114)
Q Consensus 475 ~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~ 552 (1114)
.|...+++++...+++|.++|..+++.+.++... ..+..+.+ ++||+++++++.|+.|.+||+. +.+....+..
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~--SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~- 238 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRL--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI- 238 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEE--CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-
Confidence 3433337888889999999999999999888743 35567776 4567899999999999999995 5444444332
Q ss_pred CCeeEEEEEe----cCCCeEEeeecccceeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCC---------C
Q 001248 553 GRWCTTMAYS----ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG---------L 618 (1114)
Q Consensus 553 ~~~v~~~~~s----~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~ 618 (1114)
+.....++++ |||+ +++++. .+++|.++|..+.+.+..+...+. .
T Consensus 239 G~~P~~ia~s~~~~pDGk---------------------~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~ 297 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDK---------------------YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE 297 (567)
T ss_dssp CSEEEEEEECCSTTCTTT---------------------EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC
T ss_pred CCCCceeEEccccCCCCC---------------------EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCC
Confidence 2234455555 3554 565554 579999999999999888764321 1
Q ss_pred CCcCeEEEcCCCCEEEE-EeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcccccccccccc
Q 001248 619 PASPRIRFNKDGCLLAV-STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS 697 (1114)
Q Consensus 619 ~~v~~~~~s~d~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1114)
..+..+..++++..++. ...+|.|.++|..+...
T Consensus 298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~--------------------------------------------- 332 (567)
T 1qks_A 298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN--------------------------------------------- 332 (567)
T ss_dssp CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE---------------------------------------------
T ss_pred CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc---------------------------------------------
Confidence 13344555555433332 22334555544332200
Q ss_pred ccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEE
Q 001248 698 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 777 (1114)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~v 777 (1114)
+.+
T Consensus 333 -----------------------------------------------------------------------------~~v 335 (567)
T 1qks_A 333 -----------------------------------------------------------------------------LKT 335 (567)
T ss_dssp -----------------------------------------------------------------------------EEE
T ss_pred -----------------------------------------------------------------------------cee
Confidence 000
Q ss_pred EeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCcccccc
Q 001248 778 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATF 855 (1114)
Q Consensus 778 w~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~ 855 (1114)
..+. .......+.|+|||++++++. +++|.++|+.+++.+..+
T Consensus 336 ~~i~-----------------------------------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 336 TEIS-----------------------------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp EEEE-----------------------------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred eeee-----------------------------------ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence 0000 112234567888888887766 688999999988776555
Q ss_pred CC-----CCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEccc-------ceEEEeecccccCeeEEEEcCCCCEEEEEeC
Q 001248 856 MP-----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGA 922 (1114)
Q Consensus 856 ~~-----~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~ 922 (1114)
.. |.+.-..+ ++|+.+.+.+++. .++.|.++|..+ .+.+..+......-..|.++|++++|.+...
T Consensus 381 ~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 381 DTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp ECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT
T ss_pred eccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecC
Confidence 43 33222222 5783355555553 468999999987 6778887765443345789999999988663
Q ss_pred -------CCcEEEEeCCCCcc---c-cccccccC--CCCCCCCCCceEEEEccCCcEEEEE------eCCeEEEEEcCCC
Q 001248 923 -------DSQLCVWSSDGWEK---Q-KNRFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKL 983 (1114)
Q Consensus 923 -------D~~v~iwd~~~~~~---~-~~~~~~~~--~~~~~~~~~i~~v~fspdg~~l~~~------~d~~i~iwd~~~~ 983 (1114)
..+|.++|+.+.+. . ....+.+. .+.......+..+.|+|+|+++.++ .++.|.|+|.+++
T Consensus 460 ~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 460 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 35899999987511 1 11112110 0000011357899999999998875 2688999999999
Q ss_pred ceeeeee
Q 001248 984 ECVKQWV 990 (1114)
Q Consensus 984 ~~~~~~~ 990 (1114)
+.+..+.
T Consensus 540 ~~~~~i~ 546 (567)
T 1qks_A 540 ELKHVIK 546 (567)
T ss_dssp EEEEEEC
T ss_pred eEEEEeC
Confidence 9887765
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=2.7e-14 Score=174.89 Aligned_cols=243 Identities=9% Similarity=-0.027 Sum_probs=159.1
Q ss_pred eccCCCCceEEEEcCCCCeEEEEE--ecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCee-------
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVG--TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN------- 424 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg--~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~------- 424 (1114)
...|...+..++|++++.+ ++++ +.++...||....+.... .+..|...|.
T Consensus 19 ~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVW-WVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYS 78 (662)
T ss_dssp HHHTCSCCEEEEEETTEEE-EEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTC
T ss_pred HhhcCCccceeEEcCCeEE-EEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccC
Confidence 3458999999999988653 5555 457889999965443332 2444555555
Q ss_pred --EEEEc--CCCCe-EEEEeC-CCeEEEEEcc--C-CceeeeeEeecc-----ccCCeeEEEecCCCCeeEEEEecCC--
Q 001248 425 --RVIWS--PDGSL-FGVAYS-RHIVQIYSYH--G-GDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDD-- 488 (1114)
Q Consensus 425 --~l~~s--pdg~~-las~~~-dg~i~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~v~~s~d~~~~~l~s~~~d-- 488 (1114)
...|+ |||++ |+.++. +..|.+|++. + ++ .. .+.. |...+.+++|||||+ .|++++.+
T Consensus 79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~ 152 (662)
T 3azo_A 79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFT 152 (662)
T ss_dssp CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEEC
T ss_pred CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEeccc
Confidence 56565 99999 877654 4556666665 2 33 33 3444 667889999999999 56666655
Q ss_pred --------CCEEEEeCCC------CcceeEee-ccccCEEEEeeccCCCceEEEEEecCC--------eEEEEEcC-CCC
Q 001248 489 --------KTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDG--------KIKAWLYD-NLG 544 (1114)
Q Consensus 489 --------~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~--------~i~~wd~~-~~~ 544 (1114)
..|++||+.+ ++ ...+. .+...+..++|+ +||++|+.++.++ .|.+||+. ++.
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~ 229 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR 229 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred CCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence 5799999987 44 45555 556667777764 5678888877553 79999987 331
Q ss_pred --Ceeee-cCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCC--eEEEEECCCcceEEEeccCCCC-
Q 001248 545 --SRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGL- 618 (1114)
Q Consensus 545 --~~~~~-~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~- 618 (1114)
....+ ..+... +..+.|+|+|++++++..++ .|++||..+++.......+...
T Consensus 230 ~~~~~~l~~~~~~~---------------------~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 288 (662)
T 3azo_A 230 FADTRTLLGGPEEA---------------------IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA 288 (662)
T ss_dssp EEEEEEEEEETTBC---------------------EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred ccccEEeCCCCCce---------------------EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence 11111 112233 34455555555667777777 6777777677655443322211
Q ss_pred -----CCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 619 -----PASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 619 -----~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
..+..++|+++++++++++. +.+++|.+
T Consensus 289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 01467899999999999888 98888854
No 178
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.62 E-value=2.9e-10 Score=141.67 Aligned_cols=552 Identities=9% Similarity=0.085 Sum_probs=310.4
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
...|.++...++|. |-.|+. +.+..||..+++.... ... .......|.++...++|.+.+.
T Consensus 87 ~n~I~~i~~d~~g~--lWigT~-~Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~ 147 (795)
T 4a2l_A 87 NDISRIVKTDSQGR--VWIGTR-DGLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIS 147 (795)
T ss_dssp CSCEEEEEECTTSC--EEEEES-SCEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEE
T ss_pred ccceeEEEECCCCC--EEEEeC-CchheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEE
Confidence 45799999999998 334554 4589999877653221 000 0000011889998888876664
Q ss_pred EeCCCeEEEEEccCCceeeeeEeec-cc-cCC-eeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEE
Q 001248 438 AYSRHIVQIYSYHGGDEVRQHLEID-AH-VGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVY 513 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~~~~~~l~-~h-~~~-V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~ 513 (1114)
. . +.|..||..+++... +. ++ ... |.++...+++. +. .++.++.|..||..+++..... ..+...|.
T Consensus 148 t-~-~gl~~~~~~~~~~~~----~~~~~~~~~~i~~i~~d~~g~--lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~ 218 (795)
T 4a2l_A 148 T-P-EGLIMFDIKESKFID----DSFSTAMHKTIASTLYRQGDQ--IY-IGTSTDGLYTYSITQKTFEKVIPILGTKQIQ 218 (795)
T ss_dssp E-T-TEEEEEETTTTEEEC----SSSCHHHHTCCEEEEEEETTE--EE-EEESSSCEEEEETTTCCEEECC----CCCEE
T ss_pred E-C-CceEEEECCCCEEEe----ccCCCCCCcceEEEEECCCCC--EE-EEECCCCEEEEeCCCCeEEEecCCCCCCeeE
Confidence 4 4 448899987764322 11 11 123 88888888876 33 3555556899998776643321 12345677
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
++.. +.++. +..++.++-+..||..+..... +.... ... .......+.++..+++|. +..|+
T Consensus 219 ~i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~~-~~~~~----------~~~---~~l~~~~i~~i~~d~~g~-lWigt 280 (795)
T 4a2l_A 219 AILQ--QSPTR-IWVATEGAGLFLINPKTKEIKN-YLHSP----------SNP---KSISSNYIRSLAMDSQNR-LWIGT 280 (795)
T ss_dssp EEEE--EETTE-EEEEEBSSCEEEEETTTTEEEE-ECCCT----------TCT---TSCSCSBEEEEEECTTSC-EEEEE
T ss_pred EEEE--cCCCC-EEEEECCCCeEEEeCCCCeEEE-eecCC----------CCc---cccCCCeEEEEEEcCCCC-EEEEe
Confidence 7764 34444 4555555458888876532221 11100 000 000112344444444444 55555
Q ss_pred CCCeEEEEECCCcceEEEeccC-----CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCC
Q 001248 594 DDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 668 (1114)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 668 (1114)
.+ -|.+||..+++........ -....|.++...++|.+. .|+.++.|..|+..++. +..+.....
T Consensus 281 ~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~--~~~~~~~~~------ 350 (795)
T 4a2l_A 281 FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNR--FKNIRNIPY------ 350 (795)
T ss_dssp SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGS--SEEECCCTT------
T ss_pred CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCccc--ceEEcCCCC------
Confidence 55 5889998777654332211 012457888888888755 56677778888765431 111100000
Q ss_pred CCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcc
Q 001248 669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN 748 (1114)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~ 748 (1114)
+..
T Consensus 351 -----------------------------------------------------------------------------~~~ 353 (795)
T 4a2l_A 351 -----------------------------------------------------------------------------KNS 353 (795)
T ss_dssp -----------------------------------------------------------------------------SSS
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 000
Q ss_pred ccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee
Q 001248 749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK 828 (1114)
Q Consensus 749 ~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~ 828 (1114)
.....|.++...++|. |..++.++-+..|+.....+. .+....+.. ...-....|.+++..+
T Consensus 354 l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~------------~~~~~~~~~-----~~~l~~~~v~~i~~d~ 415 (795)
T 4a2l_A 354 LSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFT------------SYTLQEDES-----ARGIGSNNIKAVYVDE 415 (795)
T ss_dssp CSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEE------------EECCC-----------CCSCSCEEEEEEET
T ss_pred CCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEE------------EEecCCCCc-----ccCCCCccEEEEEEcC
Confidence 0235688888888887 445666655666654322110 000000000 0000245688999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccC----CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc---
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG--- 900 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~--- 900 (1114)
+|+.|-+|. ++.|.+||..+++...... .....|.++...+ ++++.+ |+. +-+.+||..+++.......
T Consensus 416 ~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~ 492 (795)
T 4a2l_A 416 KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDG 492 (795)
T ss_dssp TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EES-SCEEEEETTTTEEEECCBCTTC
T ss_pred CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-Eec-CceeEEeCCCCeEEEccccccc
Confidence 998445555 6889999988765432211 2345789999887 676555 444 4588999887764432211
Q ss_pred ---cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEE
Q 001248 901 ---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI 977 (1114)
Q Consensus 901 ---h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~i 977 (1114)
+...|.++...++|++.+... . -|..|+..+++. . ..............|.++...++|.+.+.+.. .+..
T Consensus 493 ~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~--~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~ 566 (795)
T 4a2l_A 493 TPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-Q--KASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYC 566 (795)
T ss_dssp CBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-E--ECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEE
T ss_pred cccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-E--EecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-Ccee
Confidence 236789999999988777554 4 488898876432 1 10000000011236788999999997766554 7889
Q ss_pred EEcCCCceeeeeecCC-CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEec
Q 001248 978 FETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1056 (1114)
Q Consensus 978 wd~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1056 (1114)
||..+++....-...+ ....|.++...++|.+.+++ ++-|..|+..+++.. .+.....++. .....-++...
T Consensus 567 ~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~~----~~f~~~~~~~~ 639 (795)
T 4a2l_A 567 FNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESDGLQS----NQFNTASYCRT 639 (795)
T ss_dssp EETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGGTCSC----SCEEEEEEEEC
T ss_pred ECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcCCCcc----ccCccCceeEC
Confidence 9987765433211111 14568999999999876655 455778998877654 3432222221 11222245555
Q ss_pred CCCCCeEEEEeCCCcEEEEeccC
Q 001248 1057 PQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1057 ~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
+ +|. |..|+.+| +..++...
T Consensus 640 ~-~G~-l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 640 S-VGQ-MYFGGING-ITTFRPEL 659 (795)
T ss_dssp T-TSC-EEEEETTE-EEEECGGG
T ss_pred C-CCe-EEEecCCc-eEEEcHHH
Confidence 5 555 55566666 55666654
No 179
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.62 E-value=3e-13 Score=146.12 Aligned_cols=247 Identities=14% Similarity=0.172 Sum_probs=171.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE-cCCCCeE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLF 435 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~-spdg~~l 435 (1114)
+-..+.+++++++|+ ++++...++.|.+||.. ++.+..... .....+|...+.++++ .++|+++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCeEE
Confidence 446789999999998 68888889999999987 444332100 0001244567899999 5778777
Q ss_pred EEEeC-CCeEEEEEccCCceeeeeEeec-cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee--ccccC
Q 001248 436 GVAYS-RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAP 511 (1114)
Q Consensus 436 as~~~-dg~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~h~~~ 511 (1114)
++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||. +++.+..+. ++...
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 165 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEF 165 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTCSS
T ss_pred EEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCccCC
Confidence 76643 78999999 4555443 232 3445789999999998 6788778899999995 566666664 34566
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA 591 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~ 591 (1114)
+..+++++ +|.++++...++.|.+||... .....+..... ......++++++++.+++
T Consensus 166 p~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~-------------------~~~p~~i~~d~~G~l~v~ 223 (286)
T 1q7f_A 166 PNGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGI-------------------TNYPIGVGINSNGEILIA 223 (286)
T ss_dssp EEEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTT-------------------SCSEEEEEECTTCCEEEE
T ss_pred cEEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCc-------------------cCCCcEEEECCCCCEEEE
Confidence 88888754 567788878899999999743 22222222110 012344556666666777
Q ss_pred EeCCC-eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001248 592 AGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 592 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
...++ .|.+||. +++.+..+..+.....+.+++++|+|+++++ +.++.|++|+...
T Consensus 224 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 224 DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred eCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 77775 9999995 5677777765443334668999999987776 6789999998754
No 180
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.61 E-value=4.9e-10 Score=139.57 Aligned_cols=546 Identities=10% Similarity=0.073 Sum_probs=315.0
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
...|+++.-.++|. |=.|+.+| +..||-. .. +.+..... .. ..-....|.+|...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~---~f-----~~~~~~~~----~~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGY---AF-----TVYQHNED----DP--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC--EEEEETTE-EEEECSS---CE-----EEECCCTT----CT--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC--EEEeecCc-CcccCCC---ce-----EEEeCCCC----CC--CcccccceeEEEECCCCCEEE-
Confidence 45799999999997 44566665 5666632 22 22211000 00 001235799999999887655
Q ss_pred EeCCCeEEEEEccCCceeeeeEeecccc----CCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeecc-ccC-
Q 001248 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-EAP- 511 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~- 511 (1114)
|+.+| +..||..+++... +.... ..|.++...++|. +.+. +. +.|.+||..+++......++ ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi~-t~-~gl~~~~~~~~~~~~~~~~~~~~~~ 174 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLIS-TP-EGLIMFDIKESKFIDDSFSTAMHKT 174 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEEE-ET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEEE-EC-CceEEEECCCCEEEeccCCCCCCcc
Confidence 45555 8999988765322 21111 1288999888887 3443 33 45889997766533211111 123
Q ss_pred EEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeee-cCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEE
Q 001248 512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~ 590 (1114)
|.++.. +.++. +..++.++.|..|+..+....... ......|.++. .++++. +.
T Consensus 175 i~~i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~---------------------~d~~g~-lw 229 (795)
T 4a2l_A 175 IASTLY--RQGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAIL---------------------QQSPTR-IW 229 (795)
T ss_dssp CEEEEE--EETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEE---------------------EEETTE-EE
T ss_pred eEEEEE--CCCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEE---------------------EcCCCC-EE
Confidence 777664 33444 445666556888887654322110 01122333333 333333 55
Q ss_pred EEeCCCeEEEEECCCcceEEEeccC-----CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccc
Q 001248 591 AAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1114)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1114)
.++.++-|.+||..+++........ -....|.++...++|.+.+. +.+ .|.+|+..++ . +..+......
T Consensus 230 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~-~-~~~~~~~~~~-- 303 (795)
T 4a2l_A 230 VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTD-S-FASYSSNPVE-- 303 (795)
T ss_dssp EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETTTT-E-EEEECCCTTS--
T ss_pred EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCCCC-e-EEEEecCCCC--
Confidence 5665555899998776544332211 01235788888888886654 444 5888887654 1 1111100000
Q ss_pred cCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccccccc
Q 001248 666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 745 (1114)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 745 (1114)
..
T Consensus 304 --------------------------------------------------------------------------~~---- 305 (795)
T 4a2l_A 304 --------------------------------------------------------------------------NG---- 305 (795)
T ss_dssp --------------------------------------------------------------------------TT----
T ss_pred --------------------------------------------------------------------------CC----
Confidence 00
Q ss_pred CccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEE
Q 001248 746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1114)
Q Consensus 746 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~ 825 (1114)
......|.++...++|. +..++.++-|..|+.....+. .+..... . ..-....|.+++
T Consensus 306 --~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~~~~~---~----~~l~~~~V~~i~ 363 (795)
T 4a2l_A 306 --SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK------------NIRNIPY---K----NSLSDNVVSCIV 363 (795)
T ss_dssp --SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE------------EECCCTT---S----SSCSCSSEEEEE
T ss_pred --CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce------------EEcCCCC---C----CCCCCCeeEEEE
Confidence 01345688899999888 445555555666664432211 0100000 0 001345688999
Q ss_pred EeeCCCEEEEEeCCeEEEEEcCCCccccccC--------CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 826 LSKNDSYVMSASGGKISLFNMMTFKTMATFM--------PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 826 ~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
..++|.+.+...++.|..|+..++....... .....|.+++..+ ++++|.+|+.++-|..||..+++....
T Consensus 364 ~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 364 EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 9888886665557789999987765432211 1235689999988 777566688877899999988764332
Q ss_pred ec----ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCC
Q 001248 898 LK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 973 (1114)
Q Consensus 898 l~----~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~ 973 (1114)
.. .+...|.++...++|.+.+... +| |.+|+..+++....... ..........|.++...++|.+.+.+. +
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~d~~g~lWigt~-~ 517 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEKE--KDGTPVVSKQITTLFRDSHKRLWIGGE-E 517 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCBC--TTCCBCCCCCEEEEEECTTCCEEEEES-S
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEcccc--ccccccCCceEEEEEECCCCCEEEEeC-C
Confidence 21 2346799999988888666544 44 88999877543211110 000011114678899999998877766 6
Q ss_pred eEEEEEcCCCceeeeeec-----CCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCc
Q 001248 974 QLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1048 (1114)
Q Consensus 974 ~i~iwd~~~~~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1048 (1114)
.|..||..+++. .+.. ......|.++...++|.+.+++ .. -+..||..+++.. .+.....++. ..+
T Consensus 518 Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~-~~~~~~gl~~----~~i 588 (795)
T 4a2l_A 518 GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIK-RYNTTNGLPN----NVV 588 (795)
T ss_dssp CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEE-EECGGGTCSC----SCE
T ss_pred ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEE-EeCCCCCCch----hhe
Confidence 799999887765 2221 1124579999999999866644 34 5888998877654 3332222222 224
Q ss_pred cceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1049 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1049 ~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
. ++..++ +|++.+++ ++.|..|+..+++
T Consensus 589 ~--~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 589 Y--GILEDS-FGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp E--EEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred E--EEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence 3 676666 46665544 4567778876654
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.58 E-value=2.2e-13 Score=152.06 Aligned_cols=222 Identities=11% Similarity=0.096 Sum_probs=152.6
Q ss_pred CccEEEEeeCCCEEEEEe-C---Ce--EEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC------------
Q 001248 820 AVPCFALSKNDSYVMSAS-G---GK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------------ 881 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~-d---g~--i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d------------ 881 (1114)
.+..++|||||++|+..+ + +. |.+|++.+++.......+ . +..++|+| |++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence 467899999999999876 3 33 888888877655444333 3 99999999 88888877632
Q ss_pred ---------------CcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCccccc
Q 001248 882 ---------------SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQKN 939 (1114)
Q Consensus 882 ---------------g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~-------~v~iwd~~~~~~~~~ 939 (1114)
..|++||+.+++.+..+.. . .+..++|+||| ++++++.+. ...||.+++++..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-- 211 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-- 211 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE--
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE--
Confidence 5799999998887455554 4 78999999999 888776652 4455555433221
Q ss_pred cccccCCCCCCCCCCceEEEEccCCcEEEE-EeC--------CeEEEEEcCCCceeeeeecCCCCcCeeE-EEECCCCCE
Q 001248 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--------TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQL 1009 (1114)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~-l~~s~dg~~ 1009 (1114)
.+. .+ ..+.. ++|||++|+. +.+ ..|.+|| +++..... .+|...+.. +.|+ |+ +
T Consensus 212 -~l~--~~-----~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~--~~~~~~~~~~~~~s-dg-~ 275 (347)
T 2gop_A 212 -KMF--EK-----VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL--DEVDRGVGQAKIKD-GK-V 275 (347)
T ss_dssp -EEE--EE-----ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS--TTCCSEEEEEEEET-TE-E
T ss_pred -Eec--cC-----cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEecc--ccCCcccCCccEEc-Cc-E
Confidence 111 11 12333 3999999887 433 3688888 55543322 355677886 9999 98 8
Q ss_pred EEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcE-EEEeccCCC
Q 001248 1010 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGV-HVFEPLESE 1081 (1114)
Q Consensus 1010 l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v-~vW~i~~~~ 1081 (1114)
+++++.++.++|| +.+++....+. + ...+. .++|+| .++++++.++.. .+|.+. ++
T Consensus 276 ~~~~~~~~~~~l~-~~~g~~~~~~~-------~--~~~v~--~~~~s~---~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 276 YFTLFEEGSVNLY-IWDGEIKPIAK-------G--RHWIM--GFDVDE---IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EEEEEETTEEEEE-EESSSEEEEEC-------S--SSEEE--EEEESS---SEEEEEECSSSCCEEEEES-SS
T ss_pred EEEEecCCcEEEE-EcCCceEEEec-------C--CCeEE--eeeeeC---cEEEEEcCCCChHHheEeC-Cc
Confidence 8999999999999 88766543332 1 11133 778887 577888878765 788776 44
No 182
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=2.3e-13 Score=144.88 Aligned_cols=253 Identities=11% Similarity=0.054 Sum_probs=185.2
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCC-CCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccc-cCe
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRI 905 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V 905 (1114)
.++.|++++ ++.|.+||.++++.+.++..+. ..+.+++++| +|++|+ +.++.|+.||. +|+.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 457788887 8999999999999999988765 4789999999 899888 34778999999 899998888653 578
Q ss_pred eEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCC
Q 001248 906 TGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL 983 (1114)
Q Consensus 906 ~~l~~s~d~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~ 983 (1114)
.++.+.+||+++++.+. ++.|..++.+. +......+. .+..........+++.++|+++++. .++.|..||.. |
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~l~~~~~~--~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMKG-EVLSKTEFE--TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTTS-CEEEEEEEC--CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCCC-CEEEEEecc--CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 89999999999999887 77777777643 322111111 1100000134566889999999985 78999999998 9
Q ss_pred ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeE
Q 001248 984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1063 (1114)
Q Consensus 984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l 1063 (1114)
+.+..+... ..+.++.+.++|.++++++.+++|..+|..+|+.+.++.... .+ + .....+..+...+ +++++
T Consensus 156 ~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~-~--~~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 156 QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IE-G--VQLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SB-S--CCCSEEEEEEECT-TSCEE
T ss_pred CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CC-C--ccccccccceEcC-CCCEE
Confidence 988887642 456778889999999999888899999999999998876211 11 1 0113344677777 67777
Q ss_pred EEEeCC--------CcEEEEec-cCCCCcccCCCCCCCCCCCC
Q 001248 1064 ALGLSD--------GGVHVFEP-LESEGKWGVPPPVDNGSTSS 1097 (1114)
Q Consensus 1064 ~s~~~D--------g~v~vW~i-~~~~~~~~~~~~~~~~~~~~ 1097 (1114)
++.... +..+++++ .+|+-.|+.....+-|.+++
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 776311 24467777 67888888876666665554
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.57 E-value=1.2e-12 Score=142.26 Aligned_cols=242 Identities=10% Similarity=0.081 Sum_probs=166.3
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
....+.....+++|+|+|+.+++++..++.|..||..++ .. .+..+...+.+++++|+|
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~-------------------~~~~~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS-------------------PEMHPSHHQNGHCLNKQG 80 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE-------------------EEESSCSSEEEEEECTTC
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE-------------------EEECCCCCcceeeECCCC
Confidence 344466778999999999977899999999999999887 22 133456689999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeecc-ccCCeeEEEecCCCCeeEEEE----ec-------------CCCCEEEE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVIT----CG-------------DDKTIKVW 494 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s----~~-------------~d~~i~iw 494 (1114)
+++++...++.|.+||..+++.........+ ....+.+++++|+|+ ++++ |+ ..+.|..+
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~ 158 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRL 158 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEE
Confidence 9888877778999999988764332111111 123577899999998 6676 33 12456666
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCe----eeecCCCCeeEEEEEecCCCeEEe
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ 570 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~g~~~~~ 570 (1114)
+.. ++ +..+..+......++|++ +++.+++.+.++.|.+|++...... ..+.....
T Consensus 159 ~~~-g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~---------------- 218 (296)
T 3e5z_A 159 APD-GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG---------------- 218 (296)
T ss_dssp CTT-SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS----------------
T ss_pred CCC-CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC----------------
Confidence 644 44 445555667788888754 5567777788899999998732222 11111111
Q ss_pred eecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEE-cCCCCEEEEEeCCCcEEEEEccC
Q 001248 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSD 649 (1114)
Q Consensus 571 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~~~~~dg~i~iwd~~~ 649 (1114)
....++++++|+.+++. ++.|.+||.. ++.+..+..+.. +.+++| +++++.|++++.++ +.-++..+
T Consensus 219 -----~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 219 -----KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp -----CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred -----CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 22345666666655555 8899999986 777777765532 789999 58999999888763 43444443
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=5.3e-13 Score=147.87 Aligned_cols=282 Identities=12% Similarity=0.105 Sum_probs=186.0
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
..|.++.|++++..++..+.++.++.|.-. .... +. .+...+.+++|+++|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-~~--~~~~~~~~~~~~~~g~ 57 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-------------------------PWLE-IS--KKGLQLEGLNFDRQGQ 57 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEEE-EE--SSCCCEEEEEECTTSC
T ss_pred cccceeeecCCccceeEEeecccCcccccc-------------------------eeEE-Ee--ccCccccCcEECCCCC
Confidence 456677888888877777777777766211 0000 11 1345578999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEEcccceEEEeec--ccccC
Q 001248 832 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEVKSKLK--GHSKR 904 (1114)
Q Consensus 832 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d----g~v~iwd~~~~~~~~~l~--~h~~~ 904 (1114)
+++++. ++.|.+||..+++.......+...+.+++++| +++++++...+ +.|++||..+++....+. .+...
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 136 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC 136 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCc
Confidence 877776 78999999988776554434567899999999 88888877666 689999998876543332 34567
Q ss_pred eeEEEEcCCCCEEEEEeC------CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEE
Q 001248 905 ITGLAFSHALNVLVSSGA------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA 976 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~ 976 (1114)
+.+++++|+|+++++... .+.|..|+.++++... ... . ...+..++|+|||++|+++ .++.|.
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~---~----~~~~~~i~~~~dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQ---N----ISVANGIALSTDEKVLWVTETTANRLH 207 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEE---E----ESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eec---C----CCcccceEECCCCCEEEEEeCCCCeEE
Confidence 899999999998887654 2456666655433211 111 1 0245789999999877653 468999
Q ss_pred EEEcCC-Cceeeee------ecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCcc
Q 001248 977 IFETTK-LECVKQW------VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1049 (1114)
Q Consensus 977 iwd~~~-~~~~~~~------~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1049 (1114)
+||..+ +.....+ ...++ ..+..++++++|+++++...++.|.+||. +++.+..+..... ..++ ...
T Consensus 208 ~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~---~~~ 281 (333)
T 2dg1_A 208 RIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH---MLR 281 (333)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC---SCB
T ss_pred EEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc---ccC
Confidence 999864 3332211 11122 46788999999998888878899999998 5666666541110 0011 012
Q ss_pred ceEEEecCCCCCeEEEEeCCC----cEEEEecc
Q 001248 1050 PLVIAAHPQEPNEFALGLSDG----GVHVFEPL 1078 (1114)
Q Consensus 1050 ~~~~~~~~~d~~~l~s~~~Dg----~v~vW~i~ 1078 (1114)
+..++|+| |++.|++++.++ .-.+|.+.
T Consensus 282 ~~~~~~~~-dg~~L~v~~~~g~~~~~~~l~~~~ 313 (333)
T 2dg1_A 282 STHPQFIP-GTNQLIICSNDIEMGGGSMLYTVN 313 (333)
T ss_dssp CCEEEECT-TSCEEEEEEECGGGTCCEEEEEEE
T ss_pred cceEEECC-CCCEEEEEeCccCCCCCceEEEEe
Confidence 44789987 566676655553 33445443
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.55 E-value=5.1e-13 Score=148.99 Aligned_cols=222 Identities=12% Similarity=0.112 Sum_probs=143.4
Q ss_pred CCceEEEEcCCCCeEEEEEe--------cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcC
Q 001248 359 SSPMSMDFHPVQQTLLLVGT--------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 430 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~--------~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp 430 (1114)
..+..+++ ||++++++.. .++.|++||+.+++... + ..+..++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 44677788 9998555432 25679999998876432 2 3688999999
Q ss_pred CCCeEEEEeCC---C--eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC------------------
Q 001248 431 DGSLFGVAYSR---H--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------------------ 487 (1114)
Q Consensus 431 dg~~las~~~d---g--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~------------------ 487 (1114)
||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 37788888876443 223334 999999999995 444432
Q ss_pred ---------CCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCC-------eEEEEEcCCCCCeeeecC
Q 001248 488 ---------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-------KIKAWLYDNLGSRVDYEA 551 (1114)
Q Consensus 488 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~~~~ 551 (1114)
...|.+||+.+++.+..+.. . .+..++|+ ++| +++++..++ ...+|.++ ......+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence 25699999998887555654 3 77777875 566 777775542 34555444 222221111
Q ss_pred CCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC--------CeEEEEECCCcceEEEeccCCCCCCcCe
Q 001248 552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD--------FSIKFWDMDSVQLLTSIDADGGLPASPR 623 (1114)
Q Consensus 552 ~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~ 623 (1114)
+ . .+. .++|+|++++.++.+ ..|++|| +++.......+ ...+..
T Consensus 216 ~-~---------------------~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~--~~~~~~ 267 (347)
T 2gop_A 216 K-V---------------------SFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV--DRGVGQ 267 (347)
T ss_dssp E-E---------------------SEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC--CSEEEE
T ss_pred C-c---------------------cee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC--CcccCC
Confidence 1 1 111 125666667666643 4788888 55543333322 234665
Q ss_pred -EEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 624 -IRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 624 -~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+.|+ |+ ++++++.++.+++| +.++
T Consensus 268 ~~~~s-dg-~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 268 AKIKD-GK-VYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp EEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred ccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence 8899 88 88899999999999 8643
No 186
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.55 E-value=3.9e-12 Score=138.75 Aligned_cols=205 Identities=11% Similarity=0.088 Sum_probs=142.1
Q ss_pred CccEEEEeeCCCEEEEEe---CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceEE
Q 001248 820 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK 895 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-~~~~ 895 (1114)
....++++|||+++.++. ++.|.++|+.+++.+.++.... . ...+ |.+.+.+++.+.||++.+.++.+ ++..
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEE-EEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceee-cCCCceeEEECCCCCEEEEECCCCCeEE
Confidence 345688999999888775 4789999999999888875332 1 2233 42566777788899999998876 5543
Q ss_pred Eeecccc----cCee-EEEEc-CCCCEEEEEeCCCcEEEEeCCCCccccccccccC------CCCCCCCCCceEEEEccC
Q 001248 896 SKLKGHS----KRIT-GLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 896 ~~l~~h~----~~V~-~l~~s-~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~v~fspd 963 (1114)
.....+. ..+. ..+|. ++|++++ .+.+|+|.+.|+.+........+..+ .+.. ......++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~--p~g~q~~a~~~~ 290 (386)
T 3sjl_D 214 ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR--PGGWQQVAYHRA 290 (386)
T ss_dssp EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE--ECSSSCEEEETT
T ss_pred EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc--CCCcceeeECCC
Confidence 2221121 2222 24664 6775554 66689999999977543211111100 1111 124456888999
Q ss_pred CcEEEEEe-----------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCC-EEEEEEc-CCeEEEEEcCCCeee
Q 001248 964 QIHFLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFL-DATVCVFSAANLKLR 1030 (1114)
Q Consensus 964 g~~l~~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~s~-Dg~I~vwd~~~~~~~ 1030 (1114)
++.+.+.. ...|.++|+++++.++.+.. ...+.+|+|++|++ +|++++. ++.|.|+|..+++.+
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 99998842 14799999999999999876 34788999999997 7777654 899999999999999
Q ss_pred EEeC
Q 001248 1031 CRIN 1034 (1114)
Q Consensus 1031 ~~~~ 1034 (1114)
.++.
T Consensus 368 ~~i~ 371 (386)
T 3sjl_D 368 RSVN 371 (386)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.54 E-value=6.9e-13 Score=163.19 Aligned_cols=249 Identities=9% Similarity=-0.019 Sum_probs=164.1
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCC----cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
|...+..++|||||++|+++.+.+| +|++||+.+++.... .+. ...+..++|||||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~--~~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLE--RVKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEE--EECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------ccc--CcccceEEEEeCC
Confidence 4446889999999997555544444 899999999987642 011 1136789999999
Q ss_pred CeEEEEeCCCe----------------EEEEEccCCcee-eeeEeeccccCCeeEEEecCCCCeeEEEEecC---CCCEE
Q 001248 433 SLFGVAYSRHI----------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIK 492 (1114)
Q Consensus 433 ~~las~~~dg~----------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~---d~~i~ 492 (1114)
+.|+.++.++. |++|++.++... ........|...+..++|||||+.+++.+... +..|+
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~ 262 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW 262 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEE
Confidence 99999988765 999999887632 11112233566688999999999633332211 56899
Q ss_pred EEeCCC------Cc-ceeEeeccccCEEEEeeccCCCceEEEEEecC----CeEEEEEcCCCCC--eeeecCCCC--eeE
Q 001248 493 VWDATN------GA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGS--RVDYEAPGR--WCT 557 (1114)
Q Consensus 493 iwd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~--~~~~~~~~~--~v~ 557 (1114)
+||+.+ +. ....+..+...+... |++ +|..|+..+.+ +.|.+||+.+... ...+..+.. .+.
T Consensus 263 ~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 263 YCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp EEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE
T ss_pred EEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE
Confidence 999987 53 466677676666553 443 44555555442 3699999877542 122222222 344
Q ss_pred EEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCe--EEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEE
Q 001248 558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS--IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 635 (1114)
Q Consensus 558 ~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 635 (1114)
.+.++ +++.++++...++. |++|++.+++.+..+..+ ...+..++++|++..++.
T Consensus 340 ~~~~~---------------------~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~ 396 (710)
T 2xdw_A 340 WVACV---------------------RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFY 396 (710)
T ss_dssp EEEEE---------------------TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEE
T ss_pred EEEEE---------------------cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEE
Confidence 44444 33345777777774 666787778877777655 345778899999876664
Q ss_pred Ee----CCCcEEEEEccCCc
Q 001248 636 ST----NDNGIKILATSDGI 651 (1114)
Q Consensus 636 ~~----~dg~i~iwd~~~~~ 651 (1114)
.. ..+++..||+.++.
T Consensus 397 ~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 397 QFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECSSCCCEEEEEETTSSS
T ss_pred EEeCCCCCCEEEEEECCCCc
Confidence 42 34789999998874
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=1e-12 Score=144.51 Aligned_cols=241 Identities=11% Similarity=0.104 Sum_probs=171.5
Q ss_pred CCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
.....+++. +++..++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 345667774 344444444 7999999999999888875 346689999998 776555554789999999999988776
Q ss_pred ecccc-----cCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-
Q 001248 898 LKGHS-----KRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV- 970 (1114)
Q Consensus 898 l~~h~-----~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~- 970 (1114)
+.... .....+++ .+++.+++.. .+++|.+||..+++..... .. + .....++++|+|++++++
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i--~~--g-----~~p~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL--TI--G-----IQPTSLVMDKYNKMWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE--EC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE--Ec--C-----CCccceEEcCCCCEEEEEC
Confidence 65433 14567888 3444444443 4889999999986543321 11 1 134678999999987774
Q ss_pred eC----------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccC
Q 001248 971 HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1040 (1114)
Q Consensus 971 ~d----------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~ 1040 (1114)
.+ +.|.++|..+++....+.... ...+..++|+||+++|+++.. .|.+||..+++.... .+.+
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~----~~~~ 263 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR----PFLE 263 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS----CSBC
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee----eeec
Confidence 33 689999999998877765421 347899999999999988754 899999999886421 1111
Q ss_pred CCCCCCCccceEEEecCCCCCeEEEE----eCCCcEEEEeccCCCCcc
Q 001248 1041 AGVSSSNVHPLVIAAHPQEPNEFALG----LSDGGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1041 ~~~~~~~v~~~~~~~~~~d~~~l~s~----~~Dg~v~vW~i~~~~~~~ 1084 (1114)
.+ .-.|..++++|+++++.++. ..++.|.+|+.. ++..+
T Consensus 264 ~~----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 264 FR----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp CC----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred CC----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence 11 13455899999767777777 678999999998 77333
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.53 E-value=2.4e-11 Score=132.01 Aligned_cols=281 Identities=11% Similarity=0.116 Sum_probs=190.9
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....+.+++++++|+.+++...++.|.+|+.. +........ .....+.+++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~--~~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLP--TPDAKVMCLTISSD 67 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECS--STTCCEEEEEECTT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCC--cccCceeeEEECCC
Confidence 45678999999999977776667888887643 111111111 13456889999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCcc-ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE-eecccccCee
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT 906 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~-~l~~h~~~V~ 906 (1114)
|.++++.. ++.|..||.. ++. ...+......+..+++++ +++++++...++.|.+||. +++... .+..+...+.
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~ 144 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS 144 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence 99888776 7899999986 332 122223455789999999 8888887777889999998 554432 2333456789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCce
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 985 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~ 985 (1114)
++++.++|+++++...++.|..|+. +++... ..... . ...+..++++++|++.++. .++.|.+||. +++.
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~-~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPT-P---ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSS-T---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCC-C---CCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence 9999999988888777889999998 543321 11111 1 1356899999999977765 4788999999 6664
Q ss_pred eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEE
Q 001248 986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
. .+....+...+.+++++++|+++++...++.|.+||. +++.. .+. .+.+ . -.+..+++ + ++++.++
T Consensus 216 ~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~----~~~~--~--~~~~~i~~-~-~g~l~v~ 282 (299)
T 2z2n_A 216 T-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYP----IQIK--S--AEPHGICF-D-GETIWFA 282 (299)
T ss_dssp E-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEE----CSSS--S--CCEEEEEE-C-SSCEEEE
T ss_pred E-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEe----CCCC--C--CccceEEe-c-CCCEEEE
Confidence 3 3333345678999999999996666657889999998 45433 332 1111 1 22447777 5 5666665
Q ss_pred EeCCCcEEEEeccCCC
Q 001248 1066 GLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1066 ~~~Dg~v~vW~i~~~~ 1081 (1114)
.. .+.+..+++.+++
T Consensus 283 ~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 283 ME-CDKIGKLTLIKDN 297 (299)
T ss_dssp ET-TTEEEEEEEC---
T ss_pred ec-CCcEEEEEcCccc
Confidence 44 6788888887654
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.53 E-value=1.8e-12 Score=140.73 Aligned_cols=234 Identities=8% Similarity=-0.034 Sum_probs=162.4
Q ss_pred CCCCccEEEEeeCCC-EEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE
Q 001248 817 PEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~-~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1114)
......+++|+|+++ +++++. ++.|..|+..++ ...+..+...+.+++++| +++++++...++.|.+||..+++.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcE
Confidence 345578899999999 566665 799999999876 556666677899999999 888888777778999999988775
Q ss_pred EEeecc----cccCeeEEEEcCCCCEEEEEeC-----------------CCcEEEEeCCCCccccccccccCCCCCCCCC
Q 001248 895 KSKLKG----HSKRITGLAFSHALNVLVSSGA-----------------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ 953 (1114)
Q Consensus 895 ~~~l~~----h~~~V~~l~~s~d~~~l~s~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 953 (1114)
...... ....+++++++|+|+++++.+. .+.|..++.. ++.. .+ . ... .
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~---~~--~-~~~---~ 172 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS---AP--I-RDR---V 172 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE---EE--E-CCC---S
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE---Ee--e-cCC---C
Confidence 433322 1235678999999999987431 2345555444 2211 11 1 111 2
Q ss_pred CceEEEEccCCcEEEEE-eCCeEEEEEcC-CCce---eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 954 SDTRVQFHQDQIHFLVV-HETQLAIFETT-KLEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 954 ~i~~v~fspdg~~l~~~-~d~~i~iwd~~-~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
....++|+|||+.+++. .++.|.+|++. +++. ...+ ..+...+..++++++|+++++. ++.|.+||.. ++
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 45889999999999553 56899999987 4554 2333 3456677899999999866655 8899999986 77
Q ss_pred eeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCC
Q 001248 1029 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
.+..+. .+.+ +.+++|...|++.|++++.+ .+.-++..+.
T Consensus 248 ~~~~~~----~~~~-------~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 248 ELGRVL----TPQT-------TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp EEEEEE----CSSC-------CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred EEEEEE----CCCC-------ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 776665 2211 33788853367888888765 3344444443
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=2e-12 Score=142.29 Aligned_cols=274 Identities=10% Similarity=0.025 Sum_probs=185.1
Q ss_pred cCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCcccccccccc
Q 001248 721 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW 800 (1114)
Q Consensus 721 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w 800 (1114)
+.++.+.++|..+.+........ ............+.+. +++.+++...++.|.+||..
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~-~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~------------------- 72 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYR-ANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN------------------- 72 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHH-HHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT-------------------
T ss_pred CCCceEEEEECCCCEEhhhhHhh-hcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc-------------------
Confidence 34789999998865432222100 0001122345677774 44555555667888888754
Q ss_pred CCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCC-----CCeEEEEEecCCCcE
Q 001248 801 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNI 874 (1114)
Q Consensus 801 ~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~ 874 (1114)
+++.+... . .......++++++++..++.. ++.|.+||..+++....+.... .....+++ . ++++
T Consensus 73 ---t~~~~~~i-~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~l 143 (328)
T 3dsm_A 73 ---TFKEVGRI-T---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYV 143 (328)
T ss_dssp ---TCCEEEEE-E---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEE
T ss_pred ---ccEEEEEc-C---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEE
Confidence 33332221 1 235678899999996655553 8999999999988776655332 14566777 4 6666
Q ss_pred EEEEe-CCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCccccccccc
Q 001248 875 IAIGM-DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----------SQLCVWSSDGWEKQKNRFLQ 943 (1114)
Q Consensus 875 la~g~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----------~~v~iwd~~~~~~~~~~~~~ 943 (1114)
+++.. .++.|.+||+.+++.+..+... ....+++++++|++++++..+ +.|.+||..+++... .+.
T Consensus 144 yv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~ 220 (328)
T 3dsm_A 144 YVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFK 220 (328)
T ss_dssp EEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEE
T ss_pred EEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEe
Confidence 66654 4889999999999888777643 345789999999988877655 789999998865432 122
Q ss_pred cCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEE-----EcCCe
Q 001248 944 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-----FLDAT 1018 (1114)
Q Consensus 944 ~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-----s~Dg~ 1018 (1114)
...+ .....++|+||+++|.++.. .|.+||..+++.........+...+..++++|++..|+++ ..++.
T Consensus 221 ~~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~ 294 (328)
T 3dsm_A 221 FKLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI 294 (328)
T ss_dssp CCTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred cCCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCE
Confidence 2222 14689999999999988654 9999999988764322222224678999999955555444 46789
Q ss_pred EEEEEcCCCeeeEEeC
Q 001248 1019 VCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 1019 I~vwd~~~~~~~~~~~ 1034 (1114)
|.+||.. |+++.++.
T Consensus 295 V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 295 VYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEECTT-CCEEEEEE
T ss_pred EEEECCC-CCEEEEEE
Confidence 9999998 99888776
No 192
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=1.5e-08 Score=125.91 Aligned_cols=608 Identities=11% Similarity=0.089 Sum_probs=320.6
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
...|+++.-..+|. |=.|+.+| +..||-.+ . +.+..... +.. ...-....|.+|...++|..|.+
T Consensus 18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~---f-----~~~~~~~~--~~~--~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR---F-----ITYYKEEQ--SSS--VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSC--EEEEESSC-EEEECSSS---E-----EEECCCSS--CSS--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCC--EEEccCCc-CccccCCc---e-----EEEEcCCC--CCc--cccccccccceEEEcCCCCEEEE
Confidence 46799999999997 44456665 66677332 1 22211000 000 00012347999999988884556
Q ss_pred EeCCCeEEEEEccCCceeeeeEe-ecc---ccCCeeEEEecC--CCCeeEEEEecCCCCEEEEeCCCCcceeEeec----
Q 001248 438 AYSRHIVQIYSYHGGDEVRQHLE-IDA---HVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG---- 507 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~~~~~~-l~~---h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---- 507 (1114)
|+.++-+..||..+++....... ... ....|.++.... ++. +..++.++.|..+|..+++.. .+..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~-~~~~~~~~ 158 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFT-HYNKSTVP 158 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEE-EESTTTCT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEE-eeccCccc
Confidence 77774599999987653321000 000 123688888877 665 334443456889997766543 2221
Q ss_pred --cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 508 --h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
....|.++.. +.++ .|..++.++-|..||..+..... +... +... .......+..+..+++
T Consensus 159 ~l~~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~-~~~~----------~~~~---~~l~~~~i~~i~~d~~ 221 (781)
T 3v9f_A 159 ALPSEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVKH-FVHD----------PQNP---NSLPGNDVRCIYKDTN 221 (781)
T ss_dssp TCSCCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEEE-ECC---------------------CCSSEEEEEECTT
T ss_pred CCCccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceEe-eecC----------CCCc---ccCCCCceeEEEEcCC
Confidence 1245777663 3344 45556666568888876532211 1100 0000 0001123444445555
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccC-----CCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecccc
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 660 (1114)
+. |..++.+ -+.+||..+++........ -....|.++...++|.+. .|+..+-|.+++..++. . ..+...
T Consensus 222 g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~-~-~~~~~~ 296 (781)
T 3v9f_A 222 GN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQ-F-LLPEQI 296 (781)
T ss_dssp CC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC----------
T ss_pred CC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCCCe-e-eeeecc
Confidence 54 4445555 6899998776543221111 112457888888887655 46665678888876652 1 111100
Q ss_pred ccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccc
Q 001248 661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC 740 (1114)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~ 740 (1114)
............ .+... ............+-.|+.++-+..++......
T Consensus 297 ~f~~~~~~~~~~-~l~~~--------------------------~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~---- 345 (781)
T 3v9f_A 297 RFEFIREGDNNY-SLSNA--------------------------SARYIFQDSFNNIWIGTWGGGINFISNAPPTF---- 345 (781)
T ss_dssp -CEEECBCSSTT-SBSSS--------------------------CEEEEEECSSCCEEEEEBSSCEEEECSSCCSC----
T ss_pred ccccccCCCCCC-CCCCC--------------------------eEEEEEEeCCCCEEEEecCCeEEEeCCCCCcc----
Confidence 000000000000 00000 00000011123344555556666666553221
Q ss_pred ccccc------CccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCC
Q 001248 741 RSLRL------PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814 (1114)
Q Consensus 741 ~~~~~------~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~ 814 (1114)
..+.. +.......|.++...++|. |..++.++-+..|+.....+. .+.. . .
T Consensus 346 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~------------~~~~-~---------~ 402 (781)
T 3v9f_A 346 HTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI------------YNKE-N---------R 402 (781)
T ss_dssp EEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE------------CC--------------
T ss_pred eeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE------------EccC-C---------C
Confidence 11110 1111345789999988887 445555555666665422110 0000 0 0
Q ss_pred CCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCcccccc--CCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 815 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 815 ~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
......|.+++..++|.+.+...++.|..++..+++..... ......|.++...+ ++.+.+ |+. +-|..||..++
T Consensus 403 ~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 403 ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASK 479 (781)
T ss_dssp -CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSS
T ss_pred CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCC
Confidence 01346688898888887666444678999998776543222 12345789998887 666554 555 55889998876
Q ss_pred eEEEeeccc-----ccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 893 EVKSKLKGH-----SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 893 ~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
+........ ...|.+++..++|.+.+.....| |..|+..+++... .....+ .....|.++...++|.+.
T Consensus 480 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~~~~--l~~~~i~~i~~d~~g~lW 553 (781)
T 3v9f_A 480 KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQYEG--FCSNTINQIYRSSKGQMW 553 (781)
T ss_dssp SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECTTTT--CSCSCEEEEEECTTSCEE
T ss_pred eEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccCCCC--CCCCeeEEEEECCCCCEE
Confidence 543322211 46799999999888766544345 7888887643221 111111 112467889999999987
Q ss_pred EEEeCCeEEEEEcCCCceeeeeecCC-CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCC
Q 001248 968 LVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1046 (1114)
Q Consensus 968 ~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
+.+.+|-+..||..+++...--...+ ....|.++...++|.+.++ +.+| |..|+..+++.. .+.....++. .
T Consensus 554 i~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~-~~~~~dGl~~----~ 626 (781)
T 3v9f_A 554 LATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFY-TYDHSNNIPQ----G 626 (781)
T ss_dssp EEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEE-EECGGGTCCS----S
T ss_pred EEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceE-EecccCCccc----c
Confidence 77664444889987765432211111 1346889999999986664 4455 777888776543 3332222221 1
Q ss_pred CccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1047 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1047 ~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
....-++...+ +|. |..|+.+| +..++...
T Consensus 627 ~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 627 SFISGCVTKDH-NGL-IYFGSING-LCFFNPDI 656 (781)
T ss_dssp CEEEEEEEECT-TSC-EEEEETTE-EEEECSCC
T ss_pred ccccCceEECC-CCE-EEEECCCc-eEEEChhh
Confidence 12222454555 555 55567677 55667554
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=4.4e-13 Score=164.38 Aligned_cols=242 Identities=12% Similarity=0.063 Sum_probs=162.8
Q ss_pred CCCCccEEEEeeCCCEEEEEe------CCeEEEEEcCCCccc-cccCCCCCCeEEEEEecCCCcEEEEEeCCCc------
Q 001248 817 PEEAVPCFALSKNDSYVMSAS------GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSS------ 883 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~------dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~------ 883 (1114)
|...+.+++|||||++||.+. +.+|++||+.+++.+ .... .......++|+| ||+.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 455688999999999999553 257999999998865 2111 111126899999 8999998888776
Q ss_pred -------EEEEEcccce----EEEeecccccCeeEEEEcCCCCEEEEEeCCC----cEEEEeCCCCccccccccccCCCC
Q 001248 884 -------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGR 948 (1114)
Q Consensus 884 -------v~iwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~----~v~iwd~~~~~~~~~~~~~~~~~~ 948 (1114)
|++|++.+++ ++.....|...+.++.|||||++|+.++.++ .|.+|+..+++. ..+...
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~--- 270 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF---RLLVKG--- 270 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC---EEEEEC---
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce---EEeecC---
Confidence 9999998765 4445555767889999999999999887766 567776544322 112111
Q ss_pred CCCCCCceEEEEccCCcEEEEEe----CCeEEEEEcCCCce--eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEE
Q 001248 949 TPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF 1022 (1114)
Q Consensus 949 ~~~~~~i~~v~fspdg~~l~~~~----d~~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vw 1022 (1114)
. ..+....+ ++|.+++.+. ++.|.+||+.+++. ...+....+...+..++|+ ++.++++...|+..+||
T Consensus 271 ~---~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 271 V---GAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp S---SCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred C---CceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 1 13455555 6676333343 47899999987753 2333322225568888998 77788899999998888
Q ss_pred EcC-CCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEE-EEe---CCCcEEEEeccCCC
Q 001248 1023 SAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LGL---SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1023 d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~-s~~---~Dg~v~vW~i~~~~ 1081 (1114)
.++ +++....+. ++. ...+. .++++| |++.++ +.+ ..++|++||+.+++
T Consensus 346 ~~~~~g~~~~~l~----~~~---~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 346 VATLKGKPVRTVQ----LPG---VGAAS--NLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTCCEEEECC----CSS---SSEEC--CCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEeCCCCeeEEec----CCC---CeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 765 455555544 221 11133 567788 566555 332 34789999999887
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.52 E-value=3.7e-11 Score=133.68 Aligned_cols=204 Identities=9% Similarity=0.005 Sum_probs=140.6
Q ss_pred ccEEEEeeCCCEEEEEe---CCeEEEEEcCCCccccc-cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 821 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
...++++|||++|+++. ++.|.++| .+++.+.+ +.... ++.+.|.+.+.+++.+.||.+.++|. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 34678899999888775 36799999 99888777 65322 24556645567777888999999999 877663
Q ss_pred eec-----ccccCe-eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC----CCCCCCCceEEEEccCCcE
Q 001248 897 KLK-----GHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIH 966 (1114)
Q Consensus 897 ~l~-----~h~~~V-~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~v~fspdg~~ 966 (1114)
... ....++ ....+.+++..++..+.++.+.+.|+.+........+..... ..........++++||++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 321 111221 234667776665555578899999997643221111111110 0001123345889999998
Q ss_pred EEEEe-----------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCCeeeEEe
Q 001248 967 FLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 967 l~~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~s-~Dg~I~vwd~~~~~~~~~~ 1033 (1114)
+.++. .+.|.++|..+++.+..+.. .....+++|+|||+ +++++. .++.|.|||+.+++.+.++
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 88742 24799999999999998864 33689999999999 777777 4899999999999999874
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.52 E-value=1.3e-12 Score=160.68 Aligned_cols=244 Identities=14% Similarity=0.089 Sum_probs=168.5
Q ss_pred CCCCccEEEEeeCCCEEEEEe--CC----eEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCc-------
Q 001248 817 PEEAVPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS------- 883 (1114)
Q Consensus 817 ~~~~v~~v~~s~d~~~l~~~~--dg----~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~------- 883 (1114)
+...+..++|||||++||.+. +| .|++||+.+++....... ...+..++|+| ||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEe-CCCEEEEEEECCcccccccc
Confidence 334678899999999999876 23 899999999887653221 12367899999 8999988887766
Q ss_pred ---------EEEEEcccce----EEEeecccccCeeEEEEcCCCCEEEEEeC-----CCcEEEEeCCC------Cccccc
Q 001248 884 ---------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGA-----DSQLCVWSSDG------WEKQKN 939 (1114)
Q Consensus 884 ---------v~iwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-----D~~v~iwd~~~------~~~~~~ 939 (1114)
|++|++.+++ ++.....|...+.++.|||||++|+.++. +..|.+||+.+ +... .
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~ 279 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK-W 279 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC-C
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc-e
Confidence 9999998865 33333445666889999999999988765 56899999976 3211 1
Q ss_pred cccccCCCCCCCCCCceEEEEccCCcEEEE-Ee----CCeEEEEEcCCCce--eeeeecCCCCcCeeEEEECCCCCEEEE
Q 001248 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYA 1012 (1114)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~----d~~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1114)
..+. .+. ..+. ..|+|+|+.|+. +. ...|.+||+.++.. ...+..+.....+..++|++++.++++
T Consensus 280 ~~l~---~~~---~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~ 352 (710)
T 2xdw_A 280 VKLI---DNF---EGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC 352 (710)
T ss_dssp EEEE---CSS---SSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred EEee---CCC---CcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence 1111 111 1233 358999998887 43 23699999988742 334442211236888999988888888
Q ss_pred EEcCCe--EEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEE-EEe---CCCcEEEEeccCCC
Q 001248 1013 CFLDAT--VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LGL---SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1013 ~s~Dg~--I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~-s~~---~Dg~v~vW~i~~~~ 1081 (1114)
...|+. |++|++.+|+.+..+. ++.+ .+..+.++| +++.++ +.+ ..++|+.||+.+++
T Consensus 353 ~~~~g~~~l~~~~~~~g~~~~~l~----~~~~------~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 353 YLHDVKNTLQLHDLATGALLKIFP----LEVG------SVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEETTEEEEEEEETTTCCEEEEEC----CCSS------EEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEECCEEEEEEEECCCCCEEEecC----CCCc------eEEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 888885 6667877888777766 2211 223678888 455544 333 34799999998877
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.50 E-value=4.7e-11 Score=129.67 Aligned_cols=237 Identities=10% Similarity=0.070 Sum_probs=163.8
Q ss_pred cceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCC
Q 001248 752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS 831 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~ 831 (1114)
..+.+++++++|..+++...++.|..|+... ........ .....+.+++++++|+
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----------------------~~~~~~~~--~~~~~~~~i~~~~~g~ 111 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKKG-----------------------IIKEYTLP--NPDSAPYGITEGPNGD 111 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTS-----------------------CEEEEECS--STTCCEEEEEECTTSC
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCCC-----------------------cEEEEeCC--CcCCCceeeEECCCCC
Confidence 4577899999998777777678888776431 11000011 1344678899999998
Q ss_pred EEEEEe-CCeEEEEEcCCCccccc-cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe-ecccccCeeEE
Q 001248 832 YVMSAS-GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGL 908 (1114)
Q Consensus 832 ~l~~~~-dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l 908 (1114)
++++.. ++.|.+||. +++.... .......+..+++++ +++++++...++.|..||. +++.... +..+...+.++
T Consensus 112 l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 188 (299)
T 2z2n_A 112 IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGI 188 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeE
Confidence 888776 789999998 5443322 233455789999999 7888887777889999998 6665432 34445678899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceee
Q 001248 909 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVK 987 (1114)
Q Consensus 909 ~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~ 987 (1114)
++.++|+++++...++.|.+|+. +++... .... .. ...+..++++++|+++++. .++.|..||. +++ +.
T Consensus 189 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~ 258 (299)
T 2z2n_A 189 TKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIP-TP---NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IE 258 (299)
T ss_dssp EECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EE
T ss_pred EECCCCCEEEEccCCceEEEECC-CCcEEE---EECC-CC---CCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eE
Confidence 99999998887777889999998 544221 1111 11 1357899999999977765 6789999998 443 34
Q ss_pred eeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 988 ~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
.+....+...+.++++ ++|++.++.+ .+.|..++..+++
T Consensus 259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 4433345678999999 8888766554 6777778877654
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.50 E-value=2.8e-12 Score=137.09 Aligned_cols=239 Identities=10% Similarity=0.048 Sum_probs=166.7
Q ss_pred CccEEEEeeCCCEEE-EEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 820 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~-~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
...+++++++|++++ +.. ++.|.+|+..+.........+...+.++++++ +++++++.. ++.|++||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678899999999777 434 78999999866543322223335688999999 788666655 88999999876543322
Q ss_pred ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEE
Q 001248 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 976 (1114)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~ 976 (1114)
.......+.+++++++|+++++...++.|.+|+..+..... ..... ...+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-----~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-----LPFTG---LNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-----CCCCS---CCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-----ecccc---CCCceeEEEeCCCCEEEEECCCCEEE
Confidence 22333568999999999988888888899999765432211 11111 1256889999999977764 578999
Q ss_pred EEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEec
Q 001248 977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1056 (1114)
Q Consensus 977 iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1056 (1114)
+||..+........ .+...+.+++++++|.++++...++.|.+|+..+..... .. ..+ .-.+..++++
T Consensus 175 ~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----~~~----~~~p~~i~~~ 242 (270)
T 1rwi_B 175 KLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----FTG----LNTPLAVAVD 242 (270)
T ss_dssp EECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----CCS----CSCEEEEEEC
T ss_pred EEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----cCC----CCCceeEEEC
Confidence 99988766543322 223678999999999777777678899999987654432 11 011 0235589999
Q ss_pred CCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1057 PQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1057 ~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+ +++++++...++.|+++++...+
T Consensus 243 ~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 243 S-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp T-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred C-CCCEEEEECCCCEEEEEcCCCcc
Confidence 8 57888888899999999998766
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.49 E-value=7.4e-13 Score=162.33 Aligned_cols=247 Identities=9% Similarity=-0.047 Sum_probs=159.6
Q ss_pred CCCCceEEEEcCCCCeEEEEEec----CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~----dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
|...+.+++|||||++|+++.+. +.+|++||+.+++.+.. ..+... ....++|||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-----------------~~~~~~--~~~~~~wspDg 179 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-----------------DVIEGG--KYATPKWTPDS 179 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-----------------CCBSCC--TTCCCEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-----------------cccCcc--cccceEEecCC
Confidence 55578999999999985555443 35799999999875310 001111 12679999999
Q ss_pred CeEEEEeCCCe-------------EEEEEccCCcee-eeeEeeccccCCeeEEEecCCCCeeEEEEecCCC----CEEEE
Q 001248 433 SLFGVAYSRHI-------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK----TIKVW 494 (1114)
Q Consensus 433 ~~las~~~dg~-------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~----~i~iw 494 (1114)
+.|+.++.|.. |++|++.++... ........|...+..+.|||||+. |+.++.++ .|++|
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~~ 257 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYWK 257 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEEE
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEEE
Confidence 99999988776 999999987632 122233456668899999999995 44444333 67777
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEe---cCCeEEEEEcCCCCC--eeeecCC--CCeeEEEEEecCCCe
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGS--RVDYEAP--GRWCTTMAYSADGTR 567 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~--~~~~~~~--~~~v~~~~~s~~g~~ 567 (1114)
|..+++ ...+..+...+....+ ++|.+++... .++.|.+||+.+... ...+..+ ...+..++++
T Consensus 258 ~~~~~~-~~~l~~~~~~~~~~~~---~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~----- 328 (695)
T 2bkl_A 258 RPGEKD-FRLLVKGVGAKYEVHA---WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV----- 328 (695)
T ss_dssp CTTCSS-CEEEEECSSCCEEEEE---ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-----
T ss_pred cCCCCc-eEEeecCCCceEEEEe---cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-----
Confidence 765554 4555556556655554 2345444443 257899999877542 1222211 2234444443
Q ss_pred EEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECC-CcceEEEeccCCCCCCcCeEEEcCCCCEEEEEe----CCCcE
Q 001248 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST----NDNGI 642 (1114)
Q Consensus 568 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----~dg~i 642 (1114)
++..+++...|+..++|.+. +++....+..+. ...+..++++|+++.++... ..++|
T Consensus 329 -----------------~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v 390 (695)
T 2bkl_A 329 -----------------GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQI 390 (695)
T ss_dssp -----------------TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEE
T ss_pred -----------------CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 33367778889988888654 455566665432 23567888999998777443 34789
Q ss_pred EEEEccCCc
Q 001248 643 KILATSDGI 651 (1114)
Q Consensus 643 ~iwd~~~~~ 651 (1114)
++||+.++.
T Consensus 391 ~~~d~~~g~ 399 (695)
T 2bkl_A 391 YKTSVSTGK 399 (695)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCc
Confidence 999998873
No 199
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.48 E-value=5.3e-11 Score=131.61 Aligned_cols=246 Identities=13% Similarity=0.082 Sum_probs=163.1
Q ss_pred eccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 354 ~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
...+...+.+++|+|+|+ |++++..++.|.+||..+++.... ...+...+.+++|+|+|+
T Consensus 40 ~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~~~~dg~ 99 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGR 99 (333)
T ss_dssp EESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSC
T ss_pred EeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEEECCCCc
Confidence 344777889999999999 688888899999999988765431 223556899999999999
Q ss_pred eEEEEeCC----CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC------CCCEEEEeCCCCccee
Q 001248 434 LFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQY 503 (1114)
Q Consensus 434 ~las~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~ 503 (1114)
++++...+ +.|.+||..++...... .-..+...+.+++++|+|+ ++++... .+.|..||..+++..
T Consensus 100 l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~- 175 (333)
T 2dg1_A 100 LFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVT- 175 (333)
T ss_dssp EEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEE-
T ss_pred EEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEE-
Confidence 88887666 68999999887643211 1113455799999999998 5565543 345666675555433
Q ss_pred EeeccccCEEEEeeccCCCceEE-EEEecCCeEEEEEcCCCC-CeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEE
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~ 581 (1114)
.+..+...+..++|++ +++.+ ++.+.++.|.+||+.+.. ....+. ........+ ......++
T Consensus 176 ~~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~------~~~~~~~~~--------~~~~~~i~ 239 (333)
T 2dg1_A 176 PIIQNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFG------ATIPYYFTG--------HEGPDSCC 239 (333)
T ss_dssp EEEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEE------EEEEEECCS--------SSEEEEEE
T ss_pred EeecCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCccccc------ceEEEecCC--------CCCCCceE
Confidence 3333445577888754 55544 555568899999986422 221110 000000000 01344577
Q ss_pred ecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCC----CCCCcCeEEEcCCCCEEEEEeCCC
Q 001248 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTNDN 640 (1114)
Q Consensus 582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~dg 640 (1114)
++++++.+++...++.|.+||. +++.+..+..+. +...+.+++|++|++.|++++.++
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred ECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 7777777777778899999998 566666665432 112478999999987777666553
No 200
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.47 E-value=6.8e-12 Score=134.12 Aligned_cols=239 Identities=8% Similarity=0.033 Sum_probs=160.1
Q ss_pred CceEEEEcCCCCeEEE-EEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 360 SPMSMDFHPVQQTLLL-VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 360 ~v~~v~~spdg~~ll~-tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
...+++++++|+ +++ +.+.++.|.+||..++.... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 789999999998 576 54678999999976654321 112233467889999999966665
Q ss_pred eCCCeEEEEEccCCceeeeeEeec-cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEee
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 517 (1114)
. ++.|.+||..+..... +. .....+.+++++++|+ ++++...++.|.+|+..+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987654321 22 2335789999999998 6777777889999986554433322223345667776
Q ss_pred ccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCe
Q 001248 518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597 (1114)
Q Consensus 518 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 597 (1114)
. ++|.++++...++.|.+||............... ....++++++|..+++...++.
T Consensus 158 ~--~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------------~p~~i~~d~~g~l~v~~~~~~~ 214 (270)
T 1rwi_B 158 D--NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT---------------------APWGIAVDEAGTVYVTEHNTNQ 214 (270)
T ss_dssp C--TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC---------------------SEEEEEECTTCCEEEEETTTSC
T ss_pred e--CCCCEEEEECCCCEEEEEecCCCceEeecccCCC---------------------CceEEEECCCCCEEEEECCCCc
Confidence 4 4556777777788999999875432221111112 2334555555556666667889
Q ss_pred EEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 598 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
|.+|+........ ... .+...+.+++++++|+++++...++.|++++....
T Consensus 215 v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 215 VVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 9999987654333 221 22245789999999998888888999999987655
No 201
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.47 E-value=6.4e-12 Score=137.04 Aligned_cols=277 Identities=9% Similarity=0.049 Sum_probs=185.2
Q ss_pred EEccCcceeeeccc-----CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 758 IFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 758 ~~s~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
...|+++.+++... ++.|.+.|.. +++.+.....+ ..+ .++++|||++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~----------------------t~~v~~~I~vG---~~P--~va~spDG~~ 91 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGE----------------------AGRVIGMIDGG---FLP--NPVVADDGSF 91 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETT----------------------TTEEEEEEEEC---SSC--EEEECTTSSC
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECC----------------------CCeEEEEEECC---CCC--cEEECCCCCE
Confidence 44678887776654 4677776643 44433322222 122 4999999998
Q ss_pred EEEEe-----------CCeEEEEEcCCCccccccCCCC-------CCeEEEEEecCCCcEEEEEeC--CCcEEEEEcccc
Q 001248 833 VMSAS-----------GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVD 892 (1114)
Q Consensus 833 l~~~~-----------dg~i~iwd~~~~~~~~~~~~~~-------~~i~~l~~sp~d~~~la~g~~--dg~v~iwd~~~~ 892 (1114)
+.+++ ++.|.+||..+++.+.++.... .....++|+| ||++|.++.. ++.|.++|+.++
T Consensus 92 lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~ 170 (386)
T 3sjl_D 92 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGK 170 (386)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCC
Confidence 87664 4679999999999887764321 2466799999 8888887763 689999999999
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccccccccccCCCCCCCCCCc-eEEEE-ccCCcEEEE
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSD-TRVQF-HQDQIHFLV 969 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i-~~v~f-spdg~~l~~ 969 (1114)
+.+.++.-.. . ...+....+.+++.+.||++.+.++.+ ++..... ...+. .....+ ....| .++|+++.+
T Consensus 171 ~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~~~~~dG~~~~v 243 (386)
T 3sjl_D 171 AFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFH---PEDEFLINHPAYSQKAGRLVWP 243 (386)
T ss_dssp EEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCS---CTTSCBCSCCEEETTTTEEEEE
T ss_pred cEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceec---cccccccccceeEcCCCcEEEE
Confidence 9988875321 1 233444556777888899999988876 4431111 01111 000112 22466 478988888
Q ss_pred EeCCeEEEEEcCCCc--eeeeeec--------CCCCcCeeEEEECCCCCEEEEEEc----------CCeEEEEEcCCCee
Q 001248 970 VHETQLAIFETTKLE--CVKQWVP--------RESSAPITHATFSCDSQLVYACFL----------DATVCVFSAANLKL 1029 (1114)
Q Consensus 970 ~~d~~i~iwd~~~~~--~~~~~~~--------~~h~~~v~~l~~s~dg~~l~s~s~----------Dg~I~vwd~~~~~~ 1029 (1114)
+.++.|.+.|..+.. ....+.. .-.......++++++++.|++... .+.|.+.|+.+++.
T Consensus 244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv 323 (386)
T 3sjl_D 244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 323 (386)
T ss_dssp BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence 888999999997654 3333320 001223445788999999988764 25799999999999
Q ss_pred eEEeCCCcccCCCCCCCCccceEEEecCCCCC-eEEEEe-CCCcEEEEeccCCC
Q 001248 1030 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~i~~~~ 1081 (1114)
+.++. .+.. .+ .+.+++ |++ +|+++. .++.|.|+|..+++
T Consensus 324 ~~~i~----vg~~-----~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 324 LAKFE----MGHE-----ID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEEE----EEEE-----EC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEE----CCCC-----cc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCc
Confidence 99887 3222 33 799999 454 666654 58999999999998
No 202
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=2.9e-08 Score=123.30 Aligned_cols=509 Identities=11% Similarity=0.069 Sum_probs=282.6
Q ss_pred CCceEEEEcC--CCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 359 SSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 359 ~~v~~v~~sp--dg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
..|+++.... +|. |-.|+.++.|..||..+++.... .... ...-....|.++...++|.+.+
T Consensus 115 ~~i~~i~~d~~~~g~--lwi~t~~~gl~~~~~~~~~~~~~------~~~~--------~~~l~~~~i~~i~~d~~g~lwi 178 (781)
T 3v9f_A 115 NDVTHITSSVQAGKG--LWVCTYYRGIEYLDIATGKFTHY------NKST--------VPALPSEQTWTATEAEDGKLYI 178 (781)
T ss_dssp SCEEEEEECSSTTSE--EEEEESSSCEEEEETTTTEEEEE------STTT--------CTTCSCCCEEEEEEEETTEEEE
T ss_pred CcceEEEecCccCCC--EEEEECCCCeeEEECCCCeEEee------ccCc--------ccCCCccceEEEEECCCCCEEE
Confidence 4688998888 776 33455566788999877654321 0000 0001234688998888887665
Q ss_pred EEeCCCeEEEEEccCCceeeeeEee----ccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeec-----
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG----- 507 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l----~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----- 507 (1114)
|+.++-+..||..+++........ .-....|.++...++|. +.+ |+.+ -+.+||..+++.......
T Consensus 179 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~ 253 (781)
T 3v9f_A 179 -GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN--IWI-GTSK-GLALFNANTETFTNFHNNPGNIH 253 (781)
T ss_dssp -EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEC---------
T ss_pred -EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC--EEE-EeCC-cHheECCCCCcEEEEEcCCCccc
Confidence 555545889998876532210000 01134689999988887 333 3444 688999776654322111
Q ss_pred --cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 508 --h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
....|.++.. +.+| .|..|+..+-|.++|..+......... ....+. .+... .+.....+..+..+.+
T Consensus 254 ~l~~~~i~~i~~--d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~---~f~~~~-~~~~~---~~l~~~~v~~i~~D~~ 323 (781)
T 3v9f_A 254 GALSSYIFSIKQ--LKDN-KLWIATELNGIMILDLQQNQFLLPEQI---RFEFIR-EGDNN---YSLSNASARYIFQDSF 323 (781)
T ss_dssp --CCCCEEEEEE--CTTS-EEEEEESSSCEEEEETTCC------------CEEEC-BCSST---TSBSSSCEEEEEECSS
T ss_pred cccCceEEEEEE--CCCC-CEEEEeCCCCeEEECCCCCeeeeeecc---cccccc-CCCCC---CCCCCCeEEEEEEeCC
Confidence 2356887774 4454 455666656688888765432211000 000000 00000 0112234555555555
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEec-------cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeecc
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSID-------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 658 (1114)
|+ +-.|+.++-|..|+..++....... ..-....|.++...++|.+. +|+.++.|..|+..++. ...+.
T Consensus 324 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~--~~~~~ 399 (781)
T 3v9f_A 324 NN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRV--AIYNK 399 (781)
T ss_dssp CC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEE--EECC-
T ss_pred CC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCe--EEEcc
Confidence 54 6667777788899887654332211 00112357788888887755 56666678888865431 11110
Q ss_pred ccccccccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCc
Q 001248 659 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN 738 (1114)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~ 738 (1114)
. .
T Consensus 400 ~--~---------------------------------------------------------------------------- 401 (781)
T 3v9f_A 400 E--N---------------------------------------------------------------------------- 401 (781)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C--C----------------------------------------------------------------------------
Confidence 0 0
Q ss_pred cccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCC
Q 001248 739 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 818 (1114)
Q Consensus 739 ~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~ 818 (1114)
.......|.++...++|...+ ++.++-+..++... +........ ....
T Consensus 402 --------~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~----------------------~~~~~~~~~-~~~~ 449 (781)
T 3v9f_A 402 --------RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRL----------------------KKFQIIELE-KNEL 449 (781)
T ss_dssp ----------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSS----------------------CEEEECCST-TTCC
T ss_pred --------CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCC----------------------CcEEEeccC-CCCC
Confidence 000235678888887877444 55545566665432 211111000 0134
Q ss_pred CCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCC-----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce
Q 001248 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE 893 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~ 893 (1114)
..|.++...++|.+.+... +.|..||..+++........ ...|.++...+ +|.+.+ |+.++-|..||..+++
T Consensus 450 ~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~ 526 (781)
T 3v9f_A 450 LDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQL 526 (781)
T ss_dssp CCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCE
T ss_pred CeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCe
Confidence 5688888888887555444 67999998876543322111 35789999888 676555 5554458889987765
Q ss_pred EEEeecc---cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 894 VKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 894 ~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
...-... ....|.++...++|.+.++.. +|.|..||..+++... .....+-. ...+.++...++|.+.+++
T Consensus 527 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~---~~~~~gl~--~~~i~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 527 VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV---FQRKEGLP--NTHIRAISEDKNGNIWAST 600 (781)
T ss_dssp EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE---ECGGGTCS--CCCCCEEEECSSSCEEEEC
T ss_pred EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE---ccccCCCC--CceEEEEEECCCCCEEEEc
Confidence 4332111 245689999988888766554 6754888887654221 11112211 1357889999999877665
Q ss_pred eCCeEEEEEcCCCceeeeee-cCCC-Cc--CeeEEEECCCCCEEEEEEcCCeEEEEEcC
Q 001248 971 HETQLAIFETTKLECVKQWV-PRES-SA--PITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1114)
Q Consensus 971 ~d~~i~iwd~~~~~~~~~~~-~~~h-~~--~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~ 1025 (1114)
.+.|..|+..+.+.. .+. .++- .. ...++...++|++++ |+.+|. ..++..
T Consensus 601 -~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl-~~f~p~ 655 (781)
T 3v9f_A 601 -NTGISCYITSKKCFY-TYDHSNNIPQGSFISGCVTKDHNGLIYF-GSINGL-CFFNPD 655 (781)
T ss_dssp -SSCEEEEETTTTEEE-EECGGGTCCSSCEEEEEEEECTTSCEEE-EETTEE-EEECSC
T ss_pred -CCceEEEECCCCceE-EecccCCccccccccCceEECCCCEEEE-ECCCce-EEEChh
Confidence 445788888765543 222 1111 11 235677788888665 666774 445544
No 203
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.44 E-value=1.3e-11 Score=131.20 Aligned_cols=234 Identities=12% Similarity=0.096 Sum_probs=165.0
Q ss_pred EEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCC-CCeeEEEEcCCCCeEEEEeCCCeEEEEEccC
Q 001248 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG 451 (1114)
Q Consensus 373 ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~dg~i~iwd~~~ 451 (1114)
+|++++.++.|.+||.++|+.+.+ +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 699999999999999999998764 23333 4688999999999998 34678999999 7
Q ss_pred CceeeeeEeeccc-cCCeeEEEecCCCCeeEEEEecC-CCCEEEEeCCCCcceeEeec------cccCEEEEeeccCCCc
Q 001248 452 GDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKENI 523 (1114)
Q Consensus 452 ~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~ 523 (1114)
|+.+.. +..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+..+.. +......++ ..++|
T Consensus 65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~--~~~~G 136 (276)
T 3no2_A 65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN--KNKKG 136 (276)
T ss_dssp SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE--ECTTS
T ss_pred CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce--ECCCC
Confidence 776663 4333 34688999999999 6777665 777888884 7887776642 212333333 35677
Q ss_pred eEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEEC
Q 001248 524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM 603 (1114)
Q Consensus 524 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 603 (1114)
+++++...++.|.+||.+ ++.+..+.... ...+ +...++++.+++++.++.|..+|.
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~---------------------~~~~~~g~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFS---------------------SAFLDNGDCLVACGDAHCFVQLNL 193 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCE---------------------EEECTTSCEEEECBTTSEEEEECT
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-Cccc---------------------eeEcCCCCEEEEeCCCCeEEEEeC
Confidence 899999999999999987 66666655432 1222 334455567888888889999999
Q ss_pred CCcceEEEeccCC----CCCCcCeEEEcCCCCEEEEEeCC--------CcEEEEEccCCccceeeccc
Q 001248 604 DSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND--------NGIKILATSDGIRLLRTFEN 659 (1114)
Q Consensus 604 ~~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~ 659 (1114)
.+|+.+..+.... ....+..+...++|+++++.+.. +..+++.+....+.+-.+..
T Consensus 194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 9999999886431 12235678888999998887421 23456666333255544443
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.44 E-value=2.9e-11 Score=134.70 Aligned_cols=206 Identities=12% Similarity=0.078 Sum_probs=142.8
Q ss_pred ccEEEEeeCCCEEEEEe---CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 821 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
...++++|||+++.++. ++.|.+.|+.+++.+.++..... ....|.+...+++.+.||++.+.+..+++....
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 44578889999888875 47899999999988887764221 334442345666677788888888866654422
Q ss_pred ----ecccccCe-eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCC----CCCCCceEEEEccCCcEEE
Q 001248 898 ----LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT----PTAQSDTRVQFHQDQIHFL 968 (1114)
Q Consensus 898 ----l~~h~~~V-~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~v~fspdg~~l~ 968 (1114)
+.....++ ..+.|++++..++..+..++|.+.|+.+................ ........++|+||++.+.
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence 21112222 24578999988888888899999998764321111111100000 0001233479999999887
Q ss_pred EEe-----------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCC-EEEEEE-cCCeEEEEEcCCCeeeEEe
Q 001248 969 VVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 969 ~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~s-~Dg~I~vwd~~~~~~~~~~ 1033 (1114)
++. .+.|.++|..+.+.+..+.. .....+++|+|||+ +|+++. .++.|.|+|+.+++.+.++
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 742 24799999999999999875 23689999999999 888888 5899999999999999887
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.42 E-value=2e-10 Score=127.87 Aligned_cols=237 Identities=11% Similarity=0.027 Sum_probs=161.8
Q ss_pred EEEEeeCCCEEEEEe-----------CCeEEEEEcCCCccccccCCC-------CCCeEEEEEecCCCcEEEEEeC--CC
Q 001248 823 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNIIAIGMD--DS 882 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~-----------dg~i~iwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~la~g~~--dg 882 (1114)
.++++|||+++.++. ++.|.+||..+.+.+.++... ......++|+| ||++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence 899999999998874 467999999988877665432 12345899999 8888888764 57
Q ss_pred cEEEEEcccceEEEe-ecccccCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcccccccc-ccCCCCCCCCCCceEEE
Q 001248 883 SIQIYNVRVDEVKSK-LKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQ 959 (1114)
Q Consensus 883 ~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~d~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~ 959 (1114)
.|.++| .+++.+.. +... . ++.+.|++ +.+++.+.||.+.+++. +++....... ....+..+ ......
T Consensus 149 ~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p---~~~~~~ 219 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQN---LLTQPA 219 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcc---eeecce
Confidence 899999 99988877 5432 2 24455555 45677788999999999 6544311100 00011110 112346
Q ss_pred EccCCcEE-EEEeCCeEEEEEcCCCc--eeeeeecCC--------CCcCeeEEEECCCCCEEEEEEc----------CCe
Q 001248 960 FHQDQIHF-LVVHETQLAIFETTKLE--CVKQWVPRE--------SSAPITHATFSCDSQLVYACFL----------DAT 1018 (1114)
Q Consensus 960 fspdg~~l-~~~~d~~i~iwd~~~~~--~~~~~~~~~--------h~~~v~~l~~s~dg~~l~s~s~----------Dg~ 1018 (1114)
|.+++..+ +++..+.+.+.|+.+.. .+..+.... .......++++||++.|+++.. ++.
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence 67766544 44677889999987553 222222100 0122445789999999888754 357
Q ss_pred EEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC-eEEEEe-CCCcEEEEeccCCC
Q 001248 1019 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1019 I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~i~~~~ 1081 (1114)
|.++|..+++.+.++. .+. .+..+.|+| |++ +++++. .++.|.|||..+++
T Consensus 300 V~VID~~t~~vv~~i~----~g~-------~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 300 VTSVTGLVGQTSSQIS----LGH-------DVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEEEECCCCEEEEEEE----CCC-------CcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9999999999998886 221 234799999 677 777777 58999999999988
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.37 E-value=1.5e-11 Score=151.76 Aligned_cols=248 Identities=8% Similarity=-0.025 Sum_probs=154.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCC----cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
|...+..++|||||++|+++.+.+| +|++||+.+|+.+.. . .+...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-------------------~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-------------------LKWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-------------------EEEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-------------------CCCceeccEEEECC-
Confidence 3346889999999998555554444 599999999987542 0 01112357899999
Q ss_pred CeEEEEeCCCe--------------EEEEEccCCcee-eeeEeeccccCCeeEEEecCCCCeeEEEEec---CCCCEEEE
Q 001248 433 SLFGVAYSRHI--------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVW 494 (1114)
Q Consensus 433 ~~las~~~dg~--------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~---~d~~i~iw 494 (1114)
+.|+.++.++. |++|++.++... ........|...+..+.|||||+.+++.+.. ....|++|
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~ 299 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVA 299 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEE
Confidence 99998876654 889999876531 1111223344468899999999953222221 13479999
Q ss_pred eCCCC--cceeEeeccccCEEEEeeccCCCceEEEEEec----CCeEEEEEcCCCC-Cee-eecCCCCeeEEEEEecCCC
Q 001248 495 DATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLG-SRV-DYEAPGRWCTTMAYSADGT 566 (1114)
Q Consensus 495 d~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~-~~~-~~~~~~~~v~~~~~s~~g~ 566 (1114)
|+.++ ++...+..+...+....+ ++|..|+..+. ++.|.+||+.+.. ... .+..+...+..+.
T Consensus 300 d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~------ 370 (741)
T 1yr2_A 300 RVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVG------ 370 (741)
T ss_dssp EEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE------
T ss_pred ECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEE------
Confidence 99877 425566555555554432 44566766665 3459999987642 212 2222222232333
Q ss_pred eEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECC-CcceEEEeccCCCCCCcCeEEEcCCCCEEEEEe----CCCc
Q 001248 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST----NDNG 641 (1114)
Q Consensus 567 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----~dg~ 641 (1114)
++ ++..+++...++..++|.+. ++.....+..+. ...+..++++|+++.++... ..++
T Consensus 371 ---------------~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 433 (741)
T 1yr2_A 371 ---------------IA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPAT 433 (741)
T ss_dssp ---------------EE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEE
T ss_pred ---------------EE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 33 23357777888887777554 455666665432 23577889999987665332 3478
Q ss_pred EEEEEccCCc
Q 001248 642 IKILATSDGI 651 (1114)
Q Consensus 642 i~iwd~~~~~ 651 (1114)
|.+||+.++.
T Consensus 434 i~~~d~~tg~ 443 (741)
T 1yr2_A 434 VLALDPATAK 443 (741)
T ss_dssp EEEEETTTTE
T ss_pred EEEEECCCCc
Confidence 9999998773
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.37 E-value=1.2e-09 Score=118.44 Aligned_cols=278 Identities=9% Similarity=0.047 Sum_probs=186.7
Q ss_pred cccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
....+.++++.++|+..++...++.|.+|+.. . ........ .....+.+++++++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~----------------------~~~~~~~~--~~~~~~~~i~~~~~ 72 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-G----------------------RIKEFEVP--TPDAKVMCLIVSSL 72 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S----------------------CEEEEECS--STTCCEEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-C----------------------ceEEEECC--CCCCcceeEEECCC
Confidence 34578899999999977777778888887643 1 11110011 12356889999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCccc-cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE-eecccccCee
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT 906 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~-~l~~h~~~V~ 906 (1114)
|++.++.. ++.|..||.. ++.. ..+......+..+++++ +++++++...++.|..||.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 98877766 6889999987 5442 22232346789999999 88888877778899999987 55442 2333456789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCce
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC 985 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~ 985 (1114)
++++.++|+++++...++.|..|+. +++... .... .. ...+..+++.++|.+.++. ..+.|.+|+. +++.
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TN---AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CC---CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence 9999999997777777888999998 433221 1111 11 1356899999999877775 4568999998 4544
Q ss_pred eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEE
Q 001248 986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
... ....+...+.+++++++|++.++...++.|.+||. +++.. .+. .+.+ . ..+.++++++ ++++.++
T Consensus 221 ~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~~~--~--~~~~~i~~~~-~g~l~v~ 288 (300)
T 2qc5_A 221 SEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQTE--N--AEPHGITFGK-DGSVWFA 288 (300)
T ss_dssp EEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CCST--T--CCCCCEEECT-TSCEEEE
T ss_pred EEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CCcc--C--CccceeEeCC-CCCEEEE
Confidence 332 22234567899999999986666656789999998 45443 222 1111 1 2234788887 5665554
Q ss_pred EeCCCcEEEEecc
Q 001248 1066 GLSDGGVHVFEPL 1078 (1114)
Q Consensus 1066 ~~~Dg~v~vW~i~ 1078 (1114)
.. . .|..++..
T Consensus 289 ~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 289 LK-C-KIGKLNLN 299 (300)
T ss_dssp CS-S-EEEEEEEC
T ss_pred cc-C-ceEEeCCC
Confidence 43 4 67766653
No 208
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=3.2e-10 Score=124.15 Aligned_cols=257 Identities=13% Similarity=0.093 Sum_probs=161.1
Q ss_pred ccCCCCceEEEEcCCCCeEEEE-------EecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEE
Q 001248 355 LNQGSSPMSMDFHPVQQTLLLV-------GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1114)
Q Consensus 355 ~~h~~~v~~v~~spdg~~ll~t-------g~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1114)
...-....+++|+++|+ ++++ +..++.|.+||..+++..... . . ...++...+.+++
T Consensus 14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~------------~--~~~~~~~~~~~i~ 77 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-K------------P--EVNGYGGIPAGCQ 77 (314)
T ss_dssp ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEE-C------------C--EETTEECCEEEEE
T ss_pred hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEE-e------------c--ccCCCCCCCceEE
Confidence 33455678999999998 5766 567899999998887654210 0 0 0122445799999
Q ss_pred EcCC-CCeEEEEeCCCeEEEEEccCCceeee-eEeecc-ccCCeeEEEecCCCCeeEEEEecCC---------------C
Q 001248 428 WSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQ-HLEIDA-HVGGVNDIAFSHPNKQLCVITCGDD---------------K 489 (1114)
Q Consensus 428 ~spd-g~~las~~~dg~i~iwd~~~~~~~~~-~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d---------------~ 489 (1114)
++++ |+++++.. .+.|.+||.. ++.... .....+ ....+.+++++++|+ ++++...+ +
T Consensus 78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence 9999 76555544 4469999988 653321 100111 224589999999998 55555544 5
Q ss_pred CEEEEeCCCCcceeEeeccccCEEEEeec--cCCCceEEEE-EecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCC
Q 001248 490 TIKVWDATNGAKQYIFEGHEAPVYSVCPH--HKENIQFIFS-TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 566 (1114)
Q Consensus 490 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~ 566 (1114)
.|..||.. ++... +..+......++++ .+++++.++. ...++.|.+||+......... ..+.-.+.
T Consensus 154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~-------~~~~~~~~-- 222 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-------KVWGHIPG-- 222 (314)
T ss_dssp EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-------EEEEECCC--
T ss_pred eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc-------eEEEECCC--
Confidence 67777765 55433 33344456777765 1255555544 456889999987621111000 00000000
Q ss_pred eEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEE-EeCCCcEEEE
Q 001248 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV-STNDNGIKIL 645 (1114)
Q Consensus 567 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~~dg~i~iw 645 (1114)
+.......++++++|+.+++...++.|.+||..+++.+..+..+. ..+.+++|+++|+.|++ ...++.|..|
T Consensus 223 -----~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~ 295 (314)
T 1pjx_A 223 -----THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp -----CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred -----CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEE
Confidence 000123446677777777777788999999998787777665442 35789999999995554 4556789999
Q ss_pred EccC
Q 001248 646 ATSD 649 (1114)
Q Consensus 646 d~~~ 649 (1114)
++..
T Consensus 296 ~~~~ 299 (314)
T 1pjx_A 296 EWQR 299 (314)
T ss_dssp ECSS
T ss_pred eCCC
Confidence 8764
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.33 E-value=3.8e-09 Score=114.48 Aligned_cols=238 Identities=11% Similarity=0.016 Sum_probs=160.7
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
....+.++++.++|+ +.++...++.|.+||.. ++.... .+..+...+.+++++++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF------------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE------------------ECCCCCCcceeEEECCCCCEEE
Confidence 456889999999999 57766678999999988 544321 1222345789999999999888
Q ss_pred EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee-EeeccccCEEEE
Q 001248 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSV 515 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~ 515 (1114)
+...++.|..||.. ++... ..+......+.++++.++|. ++++...++.|..||.. ++... .+......+..+
T Consensus 78 ~~~~~~~v~~~d~~-g~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFTE--YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp EETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred EecCCCeEEEECCC-CCeEE--ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 77667889999988 54321 12333446789999999998 67777767889999977 65442 233344567888
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeec--CCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
++. +++.+.++...++.|..||. +.... .+. .... ....++++++++.+++..
T Consensus 152 ~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~---------------------~~~~i~~d~~g~l~v~~~ 206 (300)
T 2qc5_A 152 TLG--SDNALWFTENQNNSIGRITN-TGKLE-EYPLPTNAA---------------------APVGITSGNDGALWFVEI 206 (300)
T ss_dssp EEC--TTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTC---------------------CEEEEEECTTSSEEEEET
T ss_pred EEC--CCCCEEEEecCCCeEEEECC-CCcEE-EeeCCCCCC---------------------CcceEEECCCCCEEEEcc
Confidence 864 45566666666788999987 32221 111 1112 234455555555566555
Q ss_pred CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
..+.|.+|+. +++.... ........+.+++++++|+++++...++.|..|+.
T Consensus 207 ~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 207 MGNKIGRITT-TGEISEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCCEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 6778999998 5554432 22222345778999999997777666788988876
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.33 E-value=5.3e-11 Score=146.89 Aligned_cols=242 Identities=11% Similarity=0.060 Sum_probs=157.2
Q ss_pred ccceEEEEEccCcceeeecccC-----ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEE
Q 001248 751 ATKISRLIFTNSGNAILALASN-----AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~ 825 (1114)
...+..+.|||||++|+.+..+ ..|++||+. +|..+.... +...+..++
T Consensus 162 ~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~----------------------tg~~~~~~~----~~~~~~~~~ 215 (741)
T 1yr2_A 162 ATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVA----------------------DGKPLADEL----KWVKFSGLA 215 (741)
T ss_dssp -EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETT----------------------TCCEEEEEE----EEEESCCCE
T ss_pred CEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECC----------------------CCCCCCccC----CCceeccEE
Confidence 3468899999999998876654 357777654 343322111 111235789
Q ss_pred EeeCCCEEEEEe-CC--------------eEEEEEcCCCcc----ccccCCCCCCeEEEEEecCCCcEEEEEeCCC----
Q 001248 826 LSKNDSYVMSAS-GG--------------KISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDS---- 882 (1114)
Q Consensus 826 ~s~d~~~l~~~~-dg--------------~i~iwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg---- 882 (1114)
|+|| +.|+.+. ++ .|++|++.++.. +.....+...+..+.||| ||++|+..+.++
T Consensus 216 wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~ 293 (741)
T 1yr2_A 216 WLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPV 293 (741)
T ss_dssp ESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSC
T ss_pred EECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCc
Confidence 9999 9888876 43 389999977653 222233334588999999 898888777544
Q ss_pred -cEEEEEcccc--eEEEeecccccCeeEEEEcCCCCEEEEEeCC----CcEEEEeCCCCccccccccccCCCCCCCCCCc
Q 001248 883 -SIQIYNVRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 955 (1114)
Q Consensus 883 -~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 955 (1114)
.|++||+.++ +....+..+...+.... +|+|+.|+..+.+ +.|.+|+++++. ... ......+. ..+
T Consensus 294 ~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~--~~l~~~~~---~~l 366 (741)
T 1yr2_A 294 NTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRF--DTVVPESK---DNL 366 (741)
T ss_dssp CEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS-CEE--EEEECCCS---SEE
T ss_pred ceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc-ccc--EEEecCCC---CeE
Confidence 8999999887 31455666666565554 4899998887764 449999998743 111 11122221 235
Q ss_pred eEEEEccCCcEEEE-EeCCeEEEEEcC-CCceeeeeecCCCCcCeeEEEECCCCCEEEEEE----cCCeEEEEEcCCCee
Q 001248 956 TRVQFHQDQIHFLV-VHETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQLVYACF----LDATVCVFSAANLKL 1029 (1114)
Q Consensus 956 ~~v~fspdg~~l~~-~~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s----~Dg~I~vwd~~~~~~ 1029 (1114)
..+.++ ++.++++ ..|+..++|... +++....+.. .+...+..++++||++.|+... ..++|++||+.+++.
T Consensus 367 ~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 367 ESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 567776 4555555 577776666543 4555555442 2356788999999998766332 347899999999874
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.31 E-value=2.4e-10 Score=125.11 Aligned_cols=245 Identities=8% Similarity=0.021 Sum_probs=163.2
Q ss_pred cceEEEEEccCcceeee-------cccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCC-CCCCCCCccE
Q 001248 752 TKISRLIFTNSGNAILA-------LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT-DSNPEEAVPC 823 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~-~~~~~~~v~~ 823 (1114)
....+++|++++..+++ ...++.|.+|+.... ........ ..++...+.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----------------------~~~~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG----------------------KKTVICKPEVNGYGGIPAG 75 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC----------------------CEEEEECCEETTEECCEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC----------------------cEEEEEecccCCCCCCCce
Confidence 35578999999987777 567788888875422 21110000 0013356889
Q ss_pred EEEeeC-CCEEEEEeCCeEEEEEcCCCccccc-cCC----CCCCeEEEEEecCCCcEEEEEeCC---------------C
Q 001248 824 FALSKN-DSYVMSASGGKISLFNMMTFKTMAT-FMP----PPPAATFLAFHPQDNNIIAIGMDD---------------S 882 (1114)
Q Consensus 824 v~~s~d-~~~l~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~sp~d~~~la~g~~d---------------g 882 (1114)
++++++ |+++++...+.|.+||.. ++.... ... ....+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 776666656689999988 654332 221 123588999999 88887776655 5
Q ss_pred cEEEEEcccceEEEeecccccCeeEEEEc----CCCCEEEE-EeCCCcEEEEeCC-CCccccccccccCCCCCCCCCCce
Q 001248 883 SIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNVLVS-SGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDT 956 (1114)
Q Consensus 883 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~l~s-~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~ 956 (1114)
.|..||.. ++... +..+......++|+ ++++.|.. ...++.|.+|+++ .++...........++. ...+.
T Consensus 154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH--EGGAD 229 (314)
T ss_dssp EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS--SCEEE
T ss_pred eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC--CCCCC
Confidence 67777765 55433 33344557899999 99976554 4567899999986 33221111222222211 02467
Q ss_pred EEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCC
Q 001248 957 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAAN 1026 (1114)
Q Consensus 957 ~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~ 1026 (1114)
.++++++|+++++. .++.|.+||..+++.+..+. .+...+.+++|++||++|++++ .++.|..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 89999999988874 67899999998787766665 3457899999999999665554 567899999864
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.29 E-value=6.4e-10 Score=120.89 Aligned_cols=239 Identities=12% Similarity=0.061 Sum_probs=155.2
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
+...+......+.|+|+|++|++++..++.|..|+. +++... +..+...+..++++++|
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQ 97 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTS
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCC
Confidence 444466778899999999988899988999999998 444221 22345578999999999
Q ss_pred CeEEEEeCCCeEEEEEccCCceeeeeEeeccc-cCCeeEEEecCCCCeeEEEE----ecC-------------CCCEEEE
Q 001248 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVIT----CGD-------------DKTIKVW 494 (1114)
Q Consensus 433 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s----~~~-------------d~~i~iw 494 (1114)
+++++...++.|.+|+.. ++.........+. ...+.++++.++|+ +.+| |.. .+.|..|
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEE
Confidence 977766666789999986 4422111111111 23578899999998 6665 332 2568888
Q ss_pred eCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecC------CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeE
Q 001248 495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT 568 (1114)
Q Consensus 495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~ 568 (1114)
|..+++..... .......++|++ +++.|+.+... +.|.+|++.... .... ..
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~-----------------~~ 232 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR-----------------RH 232 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTE-EEEE-----------------EE
T ss_pred cCCCCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC-----------------eE
Confidence 87777654433 445667788754 55667666554 789999886532 1100 00
Q ss_pred EeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEE
Q 001248 569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 643 (1114)
Q Consensus 569 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~ 643 (1114)
+..........++++++|+ +.++..+ .|.+|+. .++.+..+..+. .+.+++|+++++.|++++.++..+
T Consensus 233 ~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 233 FASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 0000011222356677777 4444444 5999998 577777776543 378999999999888888764333
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.28 E-value=5.2e-10 Score=124.57 Aligned_cols=257 Identities=12% Similarity=0.108 Sum_probs=164.4
Q ss_pred CCCCeEEEEEecC----CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe----
Q 001248 368 PVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY---- 439 (1114)
Q Consensus 368 pdg~~ll~tg~~d----g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~---- 439 (1114)
|++++++++...+ +.|.++|..+++.+..... + ..+ .+++||||++|.++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v------------------G-~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG------------------G-FLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------------------C-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC------------------C-CCC--ceEECCCCCEEEEEecccc
Confidence 5677666665544 7999999999988864221 1 124 799999999998876
Q ss_pred ------CCCeEEEEEccCCceeeeeEeec--c---ccCCeeEEEecCCCCeeEEEEec--CCCCEEEEeCCCCcceeEee
Q 001248 440 ------SRHIVQIYSYHGGDEVRQHLEID--A---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFE 506 (1114)
Q Consensus 440 ------~dg~i~iwd~~~~~~~~~~~~l~--~---h~~~V~~v~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~ 506 (1114)
.++.|.++|..+++.+..+. +. . .......++|+|||++ ++.+. .+++|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999988766432 22 0 1124567999999995 44433 36889999999999988876
Q ss_pred ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeee----ecCCCCee-EEEEEecCCCeEEeee---------
Q 001248 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD----YEAPGRWC-TTMAYSADGTRTYQGF--------- 572 (1114)
Q Consensus 507 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~~~~v-~~~~~s~~g~~~~~~~--------- 572 (1114)
.-.. ....+... ..+++.+.||.+.+.+..+.+.... +.....++ ..+.+.+++..++...
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD 292 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD 292 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence 4211 11112222 3555666677777777633322211 11100000 1112233332211100
Q ss_pred ------------------------cccceeEEEecCCCCEEEEEeC----------CCeEEEEECCCcceEEEeccCCCC
Q 001248 573 ------------------------RKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGGL 618 (1114)
Q Consensus 573 ------------------------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~ 618 (1114)
.......+.++++++++++... .+.|.++|..+.+.+..+....
T Consensus 293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-- 370 (426)
T 3c75_H 293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-- 370 (426)
T ss_dssp ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--
T ss_pred ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--
Confidence 0011112678888887777642 3579999999999999987543
Q ss_pred CCcCeEEEcCCCC-EEEEEe-CCCcEEEEEccCCccceeec
Q 001248 619 PASPRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTF 657 (1114)
Q Consensus 619 ~~v~~~~~s~d~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~ 657 (1114)
....++|+|||+ ++++.. .++.|.++|..++ +.++.+
T Consensus 371 -~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI 409 (426)
T 3c75_H 371 -EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV 409 (426)
T ss_dssp -EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred -CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence 368899999999 888887 5899999999998 445543
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.28 E-value=3.1e-10 Score=124.46 Aligned_cols=174 Identities=12% Similarity=0.127 Sum_probs=134.9
Q ss_pred CCccEEEEeeCCCEEEEEeCCeEEEEEcCCCc---------c-ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEE
Q 001248 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK---------T-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN 888 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~---------~-~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd 888 (1114)
..+..+++++...++++|+...+.+|++++.. . ......+.. |+.++| |+.+|+++ .++.|++||
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence 36889999999999999997788889976543 1 111223455 999999 57888888 889999999
Q ss_pred cccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEE
Q 001248 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL 968 (1114)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~ 968 (1114)
+.+.........|...|.++.+.+. .+++++.||+|.+||+..+.... . ...|++++|||+| ..+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~-------~~~Vs~v~WSpkG-~~v 177 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----L-------AQNVTSFDVTNSQ-LAV 177 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----E-------EESEEEEEECSSE-EEE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----c-------cCCceEEEEcCCc-eEE
Confidence 9876655666778888998888755 38899999999999999755321 1 1368999999999 444
Q ss_pred EEeCCeEEEEEcCCCce--eeeeec----C---CCCcCeeEEEECCCCCEEEE
Q 001248 969 VVHETQLAIFETTKLEC--VKQWVP----R---ESSAPITHATFSCDSQLVYA 1012 (1114)
Q Consensus 969 ~~~d~~i~iwd~~~~~~--~~~~~~----~---~h~~~v~~l~~s~dg~~l~s 1012 (1114)
...||.+++|+...+++ .+.+.. . +|...|.+|+|.+++.++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 47999999999888775 444421 1 46789999999999999886
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=7.4e-10 Score=125.15 Aligned_cols=250 Identities=8% Similarity=-0.007 Sum_probs=163.0
Q ss_pred CCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEcccceEE
Q 001248 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 895 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg--~v~iwd~~~~~~~ 895 (1114)
.....++++++++++++.. ++.|++||..++......... .... ++|++ +++.|+++..++ .|++|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4577899999999777666 689999999877665444432 2333 99999 888888887766 7999998765443
Q ss_pred Eee----cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCce-EEEEccC-CcEEEE
Q 001248 896 SKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT-RVQFHQD-QIHFLV 969 (1114)
Q Consensus 896 ~~l----~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~v~fspd-g~~l~~ 969 (1114)
..+ ..+...+.+++++|++..|+.+..++.|+.||..++......... ..+... .... .++|+|+ +.++++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence 333 224567889999995555666777889999999875421110000 111110 1113 9999996 544444
Q ss_pred -EeCCeEEEEEcCCCceeeeeecCC-------------CCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeC
Q 001248 970 -VHETQLAIFETTKLECVKQWVPRE-------------SSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 970 -~~d~~i~iwd~~~~~~~~~~~~~~-------------h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
..++.|+.|+.... +..+.... .-.....++++++|.++++-+ .+++|+.|++.+++......
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 35778999987643 22222110 023588999999999777776 78999999988887654332
Q ss_pred CCc--ccCCC--CCCCCccceEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1035 PSA--YLPAG--VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1035 ~~~--~~~~~--~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
... -...+ ....--.|..+++++ +++++++-..++.|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 100 00000 001113467899999 4778888878888888775
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=2.3e-09 Score=115.95 Aligned_cols=235 Identities=11% Similarity=0.086 Sum_probs=151.6
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
.-..+..|+|++..|+++...++.|..||..+++... + .+...+.+++++++|+++++.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l~v~~ 71 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGYVATI 71 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCEEEEE
Confidence 3456899999877788888889999999999876532 1 123579999999999965553
Q ss_pred eCCCeEEEEEccCCceeeeeEeecc--ccCCeeEEEecCCCCeeEEEEe-cC--------CCCEEEEeCCCCcceeEeec
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITC-GD--------DKTIKVWDATNGAKQYIFEG 507 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~d~~~~~l~s~-~~--------d~~i~iwd~~~~~~~~~~~~ 507 (1114)
++.|.+||..+++.. ....... ....+++++++|+|+ ++++. .. ...-.+|.+.....+..+..
T Consensus 72 --~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~ 146 (297)
T 3g4e_A 72 --GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD 146 (297)
T ss_dssp --TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE
T ss_pred --CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEEEee
Confidence 567999999887643 2212211 123578999999998 44443 21 13345555543223333333
Q ss_pred cccCEEEEeeccCCCceEE-EEEecCCeEEEEEcCC-CCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 508 HEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
+....+.++|++ +++.+ ++.+.++.|..|+++. ....... .+.... .........++++++
T Consensus 147 ~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~--------~~~~~~-------~~~~~~p~g~~~d~~ 209 (297)
T 3g4e_A 147 QVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNR--------RSVYKL-------EKEEQIPDGMCIDAE 209 (297)
T ss_dssp EESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEE--------EEEEEC-------CGGGCEEEEEEEBTT
T ss_pred ccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCc--------EEEEEC-------CCCCCCCCeeEECCC
Confidence 445567888765 44544 5566688999998742 1111100 000000 001123345667777
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc-CCCCEEEEEeC
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTN 638 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~ 638 (1114)
|++.++....+.|.+||..+++.+..+..+. ..+++++|. |+++.|++++.
T Consensus 210 G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 210 GKLWVACYNGGRVIRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SCEEEEEETTTEEEEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEEEEB
T ss_pred CCEEEEEcCCCEEEEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEEEcC
Confidence 7777777788899999999999988887653 358899998 88887776665
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.26 E-value=2e-09 Score=121.65 Aligned_cols=255 Identities=11% Similarity=0.036 Sum_probs=163.4
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
...+.|+|+++|+ |+++...++.|++||..++..... ... ..... ++|+|++++|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4688999999998 688877789999999998765431 111 22233 9999999999988
Q ss_pred eCCC--eEEEEEccCCceeeeeEeecc-ccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE----eeccccC
Q 001248 439 YSRH--IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI----FEGHEAP 511 (1114)
Q Consensus 439 ~~dg--~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~h~~~ 511 (1114)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 8765 788999887654332212222 4567889999996553 33356688999999887763322 2222222
Q ss_pred E--EEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEE
Q 001248 512 V--YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589 (1114)
Q Consensus 512 v--~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l 589 (1114)
- ..++|++. ++.++++...++.|+.|+.+.. ...+...... .. ..+| ......-.....++++++++++
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~-~g---~~dg--~~~~~~~~~P~gia~d~dG~ly 337 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQ-KT---VQDG--LREEALFAQPNGMTVDEDGNFY 337 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTC-CS---CBCE--EGGGCBCSSEEEEEECTTCCEE
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCC-CC---cCCC--cccccEeCCCeEEEEeCCCCEE
Confidence 2 27887653 3467777777889999987642 2211111100 00 0000 0000001234567888888877
Q ss_pred EEEe-CCCeEEEEECCCcceEEEeccCC-------------CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEc
Q 001248 590 LAAG-DDFSIKFWDMDSVQLLTSIDADG-------------GLPASPRIRFNKDGCLLAVSTNDNGIKILAT 647 (1114)
Q Consensus 590 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~ 647 (1114)
++-. .++.|+.|+..++...... +.. .......++++++|.++++-..++.|+.+++
T Consensus 338 vad~~~~~~I~~~~~~~G~v~~~~-g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 338 IVDGFKGYCLRKLDILDGYVSTVA-GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTCEEEEEETTTTEEEEEE-ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEeCCCCCEEEEEECCCCEEEEEe-CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 7777 8899999998777644333 220 1234568999999888888888888887765
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.25 E-value=2.5e-10 Score=125.08 Aligned_cols=199 Identities=9% Similarity=-0.019 Sum_probs=127.8
Q ss_pred ccEEEEeeCCCEEEEEe---CCeEEE--EEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc----
Q 001248 821 VPCFALSKNDSYVMSAS---GGKISL--FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---- 891 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~---- 891 (1114)
...++++|||++++++. ++.+.+ +|+.+ +.++..... ..+.|++...+++.+.||.+.+.|+.+
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 34578888888888775 356888 88877 333332111 223453445666677889988889887
Q ss_pred -ceEEEe----ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC----CCCCCCCceEEEEcc
Q 001248 892 -DEVKSK----LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 892 -~~~~~~----l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~v~fsp 962 (1114)
++.... +.-...+. + ++++..++..+. +.|.+.|+.+........+..... ..........++|+|
T Consensus 199 ~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~ 273 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp CEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred CCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC
Confidence 543321 11112232 3 666677666666 899999987533211111111000 000001223378999
Q ss_pred CCcEEEEE-e-C--------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEE-EEEE-cCCeEEEEEcCCCeee
Q 001248 963 DQIHFLVV-H-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV-YACF-LDATVCVFSAANLKLR 1030 (1114)
Q Consensus 963 dg~~l~~~-~-d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~s-~Dg~I~vwd~~~~~~~ 1030 (1114)
||+.+.++ . . +.+.++|+.+++.+..+... .....++|+|||+++ ++.. .++.|.|+|+.+++.+
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 99988874 3 2 36779999999999888753 368999999999864 5555 4899999999999999
Q ss_pred EEeC
Q 001248 1031 CRIN 1034 (1114)
Q Consensus 1031 ~~~~ 1034 (1114)
.++.
T Consensus 351 ~~I~ 354 (368)
T 1mda_H 351 SSVE 354 (368)
T ss_dssp EECC
T ss_pred EEEE
Confidence 9887
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=1.4e-10 Score=128.49 Aligned_cols=273 Identities=8% Similarity=-0.013 Sum_probs=175.4
Q ss_pred cceEEEEEccCcceeeecc--cCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 752 TKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 752 ~~i~~l~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
.....++++++|+.+++.. .++.++||.+.. +... -|.... .....+-..+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~------~~p~~~-------~~~~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLI------PFPPQS-------GNAIITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEE------ESCCCC-------SSCCCCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCee------cCCCcc-------cCcccceeEeeEEEEcCC
Confidence 4678999999999887753 234366666541 1110 010000 001125567899999999
Q ss_pred CCEEEEEe------CCeEEEEEcCCCccccccCC------CCCCeEEEEEecCCCcEEEEEe---CCCcEEEEEcccceE
Q 001248 830 DSYVMSAS------GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEV 894 (1114)
Q Consensus 830 ~~~l~~~~------dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~la~g~---~dg~v~iwd~~~~~~ 894 (1114)
++++++-. ++.|.+||+.+++.+..+.. +...+..++++++++.++++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98766543 37899999998886655432 2235689999984455556555 678999999999988
Q ss_pred EEeecccccCee-EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eC
Q 001248 895 KSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE 972 (1114)
Q Consensus 895 ~~~l~~h~~~V~-~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d 972 (1114)
...+.+|..... ...++++|..+.+.+.|++++.|.. .+..++|+|||+.|+++ ..
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence 777776543211 1455667888888888888876632 24789999999988884 33
Q ss_pred C-eEEEEEcC---CCc-----eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCC
Q 001248 973 T-QLAIFETT---KLE-----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1114)
Q Consensus 973 ~-~i~iwd~~---~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
+ .+..++.. .+. ....+...++......++++++|.++++...++.|.+||..+|+...... .+.
T Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~~-- 289 (343)
T 2qe8_A 216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DEK-- 289 (343)
T ss_dssp CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CGG--
T ss_pred CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CCc--
Confidence 3 55555432 111 00111111223456789999999988888889999999986676543332 111
Q ss_pred CCCCccceEEEecCCCCCeEEEEeCCCcEEEE
Q 001248 1044 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1075 (1114)
Q Consensus 1044 ~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW 1075 (1114)
...|..++|.+ +++++++.+..+.+.+|
T Consensus 290 ---~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 290 ---LSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ---GSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred ---eecCCeeEECC-CCcEEEEeCcccccccc
Confidence 13466899998 57777777655544333
No 220
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.24 E-value=1.9e-09 Score=116.55 Aligned_cols=225 Identities=10% Similarity=0.074 Sum_probs=150.1
Q ss_pred CCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
.-..+..|++++..|.... ++.|..||..++.. ..+. ....+.++++++ +++++++ . ++.|.+||..+++...
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEE
Confidence 3456789999766555554 78999999987654 2332 346799999999 7885554 4 5689999998876533
Q ss_pred eecc----cccCeeEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 897 KLKG----HSKRITGLAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 897 ~l~~----h~~~V~~l~~s~d~~~l~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
.... ....+++++++|+|+++++...+ ..-.||.++...... ...... .....++|+||
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~~~-------~~pngi~~spd 159 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFDQV-------DISNGLDWSLD 159 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEEEE-------SBEEEEEECTT
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEeecc-------ccccceEEcCC
Confidence 2221 22457899999999987765332 334566655321111 111111 23578999999
Q ss_pred CcEEEEE--eCCeEEEEEc--CCCcee--eeee-cCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCC
Q 001248 964 QIHFLVV--HETQLAIFET--TKLECV--KQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPS 1036 (1114)
Q Consensus 964 g~~l~~~--~d~~i~iwd~--~~~~~~--~~~~-~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~ 1036 (1114)
|+.|+++ .++.|.+|++ .++... +.+. ...+...+..++++++|.+.++...++.|.+||..+|+.+..+.
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~-- 237 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK-- 237 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE--
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE--
Confidence 9987663 4688999987 455432 1121 11234568899999999888877778899999999999988876
Q ss_pred cccCCCCCCCCccceEEEec-CCCCCeEEEEe
Q 001248 1037 AYLPAGVSSSNVHPLVIAAH-PQEPNEFALGL 1067 (1114)
Q Consensus 1037 ~~~~~~~~~~~v~~~~~~~~-~~d~~~l~s~~ 1067 (1114)
.+. ..+.+++|. | |++.|.+++
T Consensus 238 --~p~------~~~t~~~f~g~-d~~~L~vt~ 260 (297)
T 3g4e_A 238 --LPV------DKTTSCCFGGK-NYSEMYVTC 260 (297)
T ss_dssp --CSS------SBEEEEEEESG-GGCEEEEEE
T ss_pred --CCC------CCceEEEEeCC-CCCEEEEEc
Confidence 321 235589998 5 566665544
No 221
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.21 E-value=2.6e-05 Score=92.43 Aligned_cols=525 Identities=10% Similarity=0.032 Sum_probs=277.9
Q ss_pred eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE-eCCCeEEEEEcc
Q 001248 372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYH 450 (1114)
Q Consensus 372 ~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~dg~i~iwd~~ 450 (1114)
+||++ ..+.|+..++++...... +....-..+..|+|++++..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 34554 467889999886543221 011122367899999976666554 457889999987
Q ss_pred CCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEEEEeeccCCCceEEEEE
Q 001248 451 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFST 529 (1114)
Q Consensus 451 ~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~ 529 (1114)
...... .+.........+++.+.++. +.++-...+.|.+.++.... ...+ ...-.....+++.+. +|.+.++-
T Consensus 68 g~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~-~G~lY~tD 141 (628)
T 4a0p_A 68 GSALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPA-EGFMYWTE 141 (628)
T ss_dssp SCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETT-TTEEEEEE
T ss_pred CCCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccC-CCeEEEeC
Confidence 653221 12222245778999877776 45566667889999976443 3333 234455678887653 33444443
Q ss_pred -ecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE-eCCCeEEEEECCCcc
Q 001248 530 -ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQ 607 (1114)
Q Consensus 530 -~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 607 (1114)
+..+.|...+++........ ........+++++ +++.|+.+ ...+.|..+|+....
T Consensus 142 ~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~---------------------~~~~LY~aD~~~~~I~~~d~dG~~ 199 (628)
T 4a0p_A 142 WGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDY---------------------AKRRLYWTDLDTNLIESSNMLGLN 199 (628)
T ss_dssp CSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEET---------------------TTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEcc---------------------ccCEEEEEECCCCEEEEEcCCCCc
Confidence 22456666666543322222 1223344444444 43344444 356788888886543
Q ss_pred eEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhcc
Q 001248 608 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT 687 (1114)
Q Consensus 608 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1114)
. ..+... ......+++.. +.++++-...+.|...|..++.. ...+.......
T Consensus 200 ~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~-~~~l~~~~~~p----------------------- 251 (628)
T 4a0p_A 200 R-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN-RTIIQGHLDYV----------------------- 251 (628)
T ss_dssp C-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS-CEEEECSCCSC-----------------------
T ss_pred e-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc-eEEEecCCCCc-----------------------
Confidence 3 233221 12345677764 44445555577888888776632 22222110000
Q ss_pred ccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEc-cCccee
Q 001248 688 SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAI 766 (1114)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~~~~l 766 (1114)
..|.++.-........|.. ..+....+++. |.+. .
T Consensus 252 ------------------------------------~~i~v~~~~~q~~~n~C~~-------~ng~C~~~C~~~~~~~-~ 287 (628)
T 4a0p_A 252 ------------------------------------MDILVFHSSRQSGWNECAS-------SNGHCSHLCLAVPVGG-F 287 (628)
T ss_dssp ------------------------------------CEEEEECGGGSCCCCTTTT-------TGGGCSSEEEEETTTE-E
T ss_pred ------------------------------------ceeeeeeecccccceEecc-------CCCCcchhhhcCCCCC-e
Confidence 0111221111000111110 00111112221 2122 1
Q ss_pred eecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEc
Q 001248 767 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNM 846 (1114)
Q Consensus 767 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~ 846 (1114)
.+.+..|... .....+|.. ...+|+.+....|+-..+
T Consensus 288 ~C~C~~g~~l----------------------------------------~~d~~~C~~---~~~~Ll~s~~~~i~~i~l 324 (628)
T 4a0p_A 288 VCGCPAHYSL----------------------------------------NADNRTCSA---PTTFLLFSQKSAINRMVI 324 (628)
T ss_dssp EEECSTTCEE----------------------------------------CTTSSCEEC---CSSEEEEEETTEEEEECC
T ss_pred eEEcCCCcEe----------------------------------------cccCCcCcc---ccceeeeeccceEEEEec
Confidence 2222222110 111122322 245677766777777666
Q ss_pred CCCccc-cccCC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecc------cccCeeEEEEcCCCCEEE
Q 001248 847 MTFKTM-ATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG------HSKRITGLAFSHALNVLV 918 (1114)
Q Consensus 847 ~~~~~~-~~~~~-~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~------h~~~V~~l~~s~d~~~l~ 918 (1114)
...... ..+.. .-..+.+++|.+.++.++.+=...+.|+.+++........+.. ....+.+|++...++.|.
T Consensus 325 ~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY 404 (628)
T 4a0p_A 325 DEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIY 404 (628)
T ss_dssp CTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEE
T ss_pred ccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEE
Confidence 533211 11221 2345889999995555555555677898888764332222322 234678999988766554
Q ss_pred -EEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEcc-CCcEEEE-EeCC--eEEEEEcCCCceeeeeecCC
Q 001248 919 -SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHET--QLAIFETTKLECVKQWVPRE 993 (1114)
Q Consensus 919 -s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fsp-dg~~l~~-~~d~--~i~iwd~~~~~~~~~~~~~~ 993 (1114)
+-+..+.|.+.+++.... . .... ... .....+++.| .|.++.+ .... .|...++.. .....+.. .
T Consensus 405 ~td~~~~~I~v~~~~G~~~-~-~l~~---~~l---~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG-~~~~~l~~-~ 474 (628)
T 4a0p_A 405 WTCEATNVINVTRLDGRSV-G-VVLK---GEQ---DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG-TEREVLFF-S 474 (628)
T ss_dssp EEETTTTEEEEEETTSCEE-E-EEEE---CTT---CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS-CSCEEEEC-S
T ss_pred EEcCCCCEEEEEECCCCeE-E-EEEe---CCC---CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC-CCcEEEEe-c
Confidence 556678899999875321 1 1111 111 2468999999 5555555 3333 577777653 33333332 2
Q ss_pred CCcCeeEEEECCCCCEEEEEEc-CCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcE
Q 001248 994 SSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGV 1072 (1114)
Q Consensus 994 h~~~v~~l~~s~dg~~l~s~s~-Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v 1072 (1114)
.-.....|+++++++.|+.+.. .+.|...+++.. ....+.. + ....|..++... +.+..+=...+.|
T Consensus 475 ~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~-~r~~~~~------~---~~~~P~glav~~--~~ly~tD~~~~~i 542 (628)
T 4a0p_A 475 GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA-NRIVLED------S---NILQPVGLTVFE--NWLYWIDKQQQMI 542 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC------S---SCSCEEEEEEET--TEEEEEETTTTEE
T ss_pred cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC-ceEEEEc------C---CCCCcEEEEEEC--CEEEEEECCCCeE
Confidence 2456799999999888877754 478999998544 3333321 0 012355677653 4445555556788
Q ss_pred EEEeccCCC
Q 001248 1073 HVFEPLESE 1081 (1114)
Q Consensus 1073 ~vW~i~~~~ 1081 (1114)
...+..+|+
T Consensus 543 ~~~~k~~G~ 551 (628)
T 4a0p_A 543 EKIDMTGRE 551 (628)
T ss_dssp EEEETTSSS
T ss_pred EEEECcCCC
Confidence 888887776
No 222
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.20 E-value=4.7e-09 Score=126.55 Aligned_cols=203 Identities=12% Similarity=0.117 Sum_probs=136.7
Q ss_pred EEEEEecCCCcEEEEEeCCC-------------------cEEEEEcccceEEEeecc--cc-------cCeeEEEEcCCC
Q 001248 863 TFLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 914 (1114)
Q Consensus 863 ~~l~~sp~d~~~la~g~~dg-------------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 914 (1114)
..++++| ++.+|++++.++ .|..+|..+|+.+..++. |. ....-+....+|
T Consensus 246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 4678899 677888777664 499999999998877653 31 122223334477
Q ss_pred ---CEEEEEeCCCcEEEEeCCCCccccccccccC--------CCC------------C----C---CCCCceEEEEccCC
Q 001248 915 ---NVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--------TGR------------T----P---TAQSDTRVQFHQDQ 964 (1114)
Q Consensus 915 ---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--------~~~------------~----~---~~~~i~~v~fspdg 964 (1114)
+.|+.++.+|.|.++|..+++.......... .+. . + ....-..++|+|++
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~ 404 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT 404 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence 6899999999999999999876432211100 000 0 0 00011367899998
Q ss_pred cEEEEE-eC-------------------------------------------CeEEEEEcCCCceeeeeecCCCCcCeeE
Q 001248 965 IHFLVV-HE-------------------------------------------TQLAIFETTKLECVKQWVPRESSAPITH 1000 (1114)
Q Consensus 965 ~~l~~~-~d-------------------------------------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~ 1000 (1114)
.++++. .+ +.|..||+.+++.+-.+.. ..++..
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~ 481 (677)
T 1kb0_A 405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNG 481 (677)
T ss_dssp TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCC
T ss_pred CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcC
Confidence 888773 21 6799999999998777653 334555
Q ss_pred EEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC-eEEEEeC-----------
Q 001248 1001 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGLS----------- 1068 (1114)
Q Consensus 1001 l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~s~~~----------- 1068 (1114)
..++.++.++++++.||.+++||..+|+.+.++. .+.+ +...-+.|.. +|+ ++++.+.
T Consensus 482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~ 551 (677)
T 1kb0_A 482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP----TGTG-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARA 551 (677)
T ss_dssp CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCS
T ss_pred cceEeCCCEEEEECCCCcEEEEECCCCceeeeee----CCCC-----cccCCEEEEe-CCEEEEEEeccCCccccccccc
Confidence 5677788899999999999999999999999887 3333 2222455655 455 4444333
Q ss_pred -----CCcEEEEeccC
Q 001248 1069 -----DGGVHVFEPLE 1079 (1114)
Q Consensus 1069 -----Dg~v~vW~i~~ 1079 (1114)
.+.+.+|.+..
T Consensus 552 ~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 552 TERQGPGTVYTFVVGG 567 (677)
T ss_dssp CSCCCCCEEEEEEETC
T ss_pred cccCCCCeEEEEeccc
Confidence 47888888875
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.19 E-value=1.4e-09 Score=132.82 Aligned_cols=246 Identities=13% Similarity=0.100 Sum_probs=153.6
Q ss_pred CCCCceEEEEcCCCCeEEEEEecC----CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~d----g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
|...+..++|||||++|+++.+.. .+|++||+.+|+.+.. . +. ......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~~--~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------LK--DVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------EE--EEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------cC--CceeccEEEe-CC
Confidence 455788999999999855554433 4699999999986542 1 11 0113568999 99
Q ss_pred CeEEEEeCCC-------------eEEEEEccCCcee-eeeEeecc-ccCCeeEEEecCCCCeeEEEEec--CCCCEEEEe
Q 001248 433 SLFGVAYSRH-------------IVQIYSYHGGDEV-RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWD 495 (1114)
Q Consensus 433 ~~las~~~dg-------------~i~iwd~~~~~~~-~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~--~d~~i~iwd 495 (1114)
+.|+.++.+. .|++|++.++..- ..+..... |...+..+.|||||+.+++.+.. .+..|++||
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 9999998774 3999999876531 11222333 55567899999999963333222 235799999
Q ss_pred CCCCc-ceeEeeccccCEEEEeeccCCCceEEEEEecC---CeEEEEEcCCCCC--eeeecCCCCeeEEEEEecCCCeEE
Q 001248 496 ATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTY 569 (1114)
Q Consensus 496 ~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~ 569 (1114)
+.++. ....+..+....... +++.. +.+++....+ +.|..+|+.+... ...+..+...+.
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~------------ 331 (693)
T 3iuj_A 266 LSQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL------------ 331 (693)
T ss_dssp TTSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE------------
T ss_pred CCCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE------------
Confidence 98764 456666666665554 33322 2445554443 5788888876543 122222222222
Q ss_pred eeecccceeEEEecCCCCEEEEEeC-CC--eEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCC----CcE
Q 001248 570 QGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND----NGI 642 (1114)
Q Consensus 570 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d----g~i 642 (1114)
.|+++++.|+.... ++ .|++|++..+ ....+.... ...+..+.+++++..++....+ +++
T Consensus 332 -----------~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 332 -----------TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTL 398 (693)
T ss_dssp -----------EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred -----------EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEE
Confidence 44444555665553 43 6889998744 445554332 2245566778888777665544 789
Q ss_pred EEEEccCC
Q 001248 643 KILATSDG 650 (1114)
Q Consensus 643 ~iwd~~~~ 650 (1114)
..||+.++
T Consensus 399 ~~~d~~~g 406 (693)
T 3iuj_A 399 YRFEPKSG 406 (693)
T ss_dssp EEECTTTC
T ss_pred EEEECCCC
Confidence 99998776
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.18 E-value=1.5e-09 Score=120.05 Aligned_cols=251 Identities=13% Similarity=0.087 Sum_probs=145.8
Q ss_pred CCceEEEEcCCCCeEEEEEe--cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~--~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|. ....+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6889999999999 577653 2343566666555432 121111 01234667899999999998776
Q ss_pred EEeC-----CCeEEEEEccCCceeeeeEeec----cccCCeeEEEecCCCCeeEEEEec---CCCCEEEEeCCCCcceeE
Q 001248 437 VAYS-----RHIVQIYSYHGGDEVRQHLEID----AHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNGAKQYI 504 (1114)
Q Consensus 437 s~~~-----dg~i~iwd~~~~~~~~~~~~l~----~h~~~V~~v~~s~d~~~~~l~s~~---~d~~i~iwd~~~~~~~~~ 504 (1114)
+-.. ++.|.+||+.+++.++.. .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6543 578999999988755422 221 22345789999987664 455555 678999999998887666
Q ss_pred eecccc-----------------------------CEEEEeeccCCCceEEEEEecCC-eEEEEEcCCCC--CeeeecCC
Q 001248 505 FEGHEA-----------------------------PVYSVCPHHKENIQFIFSTALDG-KIKAWLYDNLG--SRVDYEAP 552 (1114)
Q Consensus 505 ~~~h~~-----------------------------~v~~~~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~--~~~~~~~~ 552 (1114)
+.+|.. .+..++|++ +++.|+.+..++ .+..++..... .......
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~--dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~- 237 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA--ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAEL- 237 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT--TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHH-
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc--CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhh-
Confidence 654321 134444432 334444444433 22222211000 0000000
Q ss_pred CCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCE
Q 001248 553 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL 632 (1114)
Q Consensus 553 ~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 632 (1114)
...+. ..+. .....-++++++|+.+++...++.|.+||..+++........ ......+++|.+++++
T Consensus 238 ~~~~~-----------~~g~-~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~l 304 (343)
T 2qe8_A 238 GSKIE-----------RYSE-KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGYL 304 (343)
T ss_dssp HTTCE-----------EEEE-CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEECTTSCE
T ss_pred hcceE-----------eccc-CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEECCCCcE
Confidence 00000 0000 012233677888888888888999999998566643333221 2335678999999887
Q ss_pred EEEEeCCCc
Q 001248 633 LAVSTNDNG 641 (1114)
Q Consensus 633 l~~~~~dg~ 641 (1114)
+++.+..+.
T Consensus 305 ~v~~~~~~~ 313 (343)
T 2qe8_A 305 YFDCNQLHH 313 (343)
T ss_dssp EEEECCGGG
T ss_pred EEEeCcccc
Confidence 777665433
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.17 E-value=8.5e-09 Score=113.00 Aligned_cols=227 Identities=12% Similarity=0.020 Sum_probs=145.1
Q ss_pred ceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC
Q 001248 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 440 (1114)
Q Consensus 361 v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 440 (1114)
..++.|+|++..+++++..++.|..||..+++... +. +...|.+++|+|+|+++++. .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~-~ 108 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS-D 108 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-T
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-C
Confidence 46889999987788888888999999998875432 11 13479999999999987765 4
Q ss_pred CCeEEEEEccCCceeeeeEeecc-c-cCCeeEEEecCCCCeeEEEEecC------CCCEEEEeCCCCcceeEeeccccCE
Q 001248 441 RHIVQIYSYHGGDEVRQHLEIDA-H-VGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 441 dg~i~iwd~~~~~~~~~~~~l~~-h-~~~V~~v~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
+ .|.+||..+++... ...... + ...+.+++++++|+ ++++... .+.|..++ +++. ..+..+....
T Consensus 109 ~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~ 181 (326)
T 2ghs_A 109 D-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIP 181 (326)
T ss_dssp T-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSE
T ss_pred C-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCccc
Confidence 4 49999998876432 212111 1 23588999999998 4444321 23455555 4543 3333344456
Q ss_pred EEEeeccCCCceEE-EEEecCCeEEEEEcC--CC-CCe--eeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCC
Q 001248 513 YSVCPHHKENIQFI-FSTALDGKIKAWLYD--NL-GSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586 (1114)
Q Consensus 513 ~~~~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~-~~~--~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~ 586 (1114)
..++|++ +++.+ ++.+.++.|.+||++ ++ ... ..+. .+.. .......++++++|
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~---------~~~~---------~~~~p~gi~~d~~G 241 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI---------DSTG---------IKGGMDGSVCDAEG 241 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE---------ECTT---------SSSEEEEEEECTTS
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEE---------ECCC---------CCCCCCeeEECCCC
Confidence 7788754 45555 444557899999986 32 110 0000 0000 01123346667777
Q ss_pred CEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc-CCCCEEEEEeCC
Q 001248 587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND 639 (1114)
Q Consensus 587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~d 639 (1114)
++.++...++.|.+||. +++.+..+..+. ..+.+++|+ ++++.|++++..
T Consensus 242 ~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 242 HIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp CEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred CEEEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEEEecCCCCEEEEEecC
Confidence 77777667789999998 677777776543 357899998 888877665543
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=3.5e-09 Score=128.00 Aligned_cols=191 Identities=15% Similarity=0.128 Sum_probs=126.2
Q ss_pred EEEEEecCCCcEEEEEeCCCc-------------------EEEEEcccceEEEeecc--cc-------cCeeEEEEcCCC
Q 001248 863 TFLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 914 (1114)
Q Consensus 863 ~~l~~sp~d~~~la~g~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 914 (1114)
..++++| +..++++++.++. |..||..+|+.+..++. |. ..+.-.....+|
T Consensus 238 ~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G 316 (689)
T 1yiq_A 238 DSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG 316 (689)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred cceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence 3678999 7778888888764 99999999999887754 22 112122222356
Q ss_pred C---EEEEEeCCCcEEEEeCCCCcccccccccc------------------------CCCC-------CCCCCCceEEEE
Q 001248 915 N---VLVSSGADSQLCVWSSDGWEKQKNRFLQI------------------------PTGR-------TPTAQSDTRVQF 960 (1114)
Q Consensus 915 ~---~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------------------------~~~~-------~~~~~~i~~v~f 960 (1114)
+ .++.++.+|.++++|..+++......... ..+. ......-..++|
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 5 78899999999999999987642111000 0000 000001134789
Q ss_pred ccCCcEEEEE-e---------------------------------------------CCeEEEEEcCCCceeeeeecCCC
Q 001248 961 HQDQIHFLVV-H---------------------------------------------ETQLAIFETTKLECVKQWVPRES 994 (1114)
Q Consensus 961 spdg~~l~~~-~---------------------------------------------d~~i~iwd~~~~~~~~~~~~~~h 994 (1114)
+|+..++++. . ++.|..||+.+++.+-.....
T Consensus 397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-- 474 (689)
T 1yiq_A 397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-- 474 (689)
T ss_dssp ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES--
T ss_pred CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC--
Confidence 9988877763 2 367999999999988776532
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC-eEEEEe
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL 1067 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~s~~ 1067 (1114)
.++..-.++..+.++++++.||.|+.||..+|+.+.++. ++.+ +...-+.|.. ||+ ++++.+
T Consensus 475 -~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~ty~~-~G~qyv~~~~ 537 (689)
T 1yiq_A 475 -TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP----AASG-----VMAAPVTYSV-DGEQYVTFMA 537 (689)
T ss_dssp -SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEE
T ss_pred -CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee----CCCC-----cccCceEEEE-CCEEEEEEEe
Confidence 233334566788899999999999999999999998887 4433 2222355655 455 455443
No 227
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.16 E-value=2.1e-05 Score=93.11 Aligned_cols=524 Identities=10% Similarity=0.050 Sum_probs=264.7
Q ss_pred cCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe-CCCeEEEEEccCCceeee
Q 001248 379 NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQ 457 (1114)
Q Consensus 379 ~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~dg~i~iwd~~~~~~~~~ 457 (1114)
....|+..++........ .....-..+..|+|++.+..|..+. ..+.|..+++.+......
T Consensus 16 ~~~~I~~i~~~~~~~~~~------------------~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~ 77 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN 77 (619)
T ss_dssp CSSBEEEECCC---------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE
T ss_pred ccccEEEEeCCCCcceEE------------------EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE
Confidence 467788888875421110 1222234678999999777666654 467788898876532111
Q ss_pred eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEee-ccccCEEEEeeccCCCceEEEEEe-cCCeE
Q 001248 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTA-LDGKI 535 (1114)
Q Consensus 458 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~-~d~~i 535 (1114)
.+...-.....+++.+.++. ++++-...+.|.+.++... ....+. ..-.....+++.+.. |.++++-- ..+.|
T Consensus 78 --v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG~-~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I 152 (619)
T 3s94_A 78 --VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKI 152 (619)
T ss_dssp --EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEE
T ss_pred --EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCCC-CEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEE
Confidence 22222346889999997775 4566667789999997644 333332 333445566765432 33444431 23455
Q ss_pred EEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE-eCCCeEEEEECCCcceEEEecc
Q 001248 536 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 536 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
...+++.................++++++ +..|+.+ ...+.|...|+...........
T Consensus 153 ~r~~~dG~~~~~l~~~~~~~P~Glald~~---------------------~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~ 211 (619)
T 3s94_A 153 ERAGMDGSSRFIIINSEIYWPNGLTLDYE---------------------EQKLYWADAKLNFIHKSNLDGTNRQAVVKG 211 (619)
T ss_dssp EEEETTSCSCEEEECSSCSSEEEEEEETT---------------------TTEEEEEETTTCCEEEESSSCCEEC-----
T ss_pred EEEECCCCceEEEEeCCCCCCcEEEEEcc---------------------CCEEEEEeCCCCeEEEecCCCCccEEEEeC
Confidence 55555433222222222233444444443 3344444 3567788888765433322221
Q ss_pred CCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccccc
Q 001248 615 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 694 (1114)
Q Consensus 615 ~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1114)
. ......+++..+ .++++-...+.|...|..++.. ...+..... .+
T Consensus 212 ~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~-~~~i~~~~~-------------~p----------------- 257 (619)
T 3s94_A 212 S--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG-LREIHSDIF-------------SP----------------- 257 (619)
T ss_dssp ------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC-CEECCSCCC-------------CC-----------------
T ss_pred C--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc-cEEEecCCC-------------CC-----------------
Confidence 1 123357788765 4444555677888888877733 222211100 00
Q ss_pred cccccccCCCCCCccccCCCcccccccCCCceeEEEeccCC-CCccccccccCccccccceEEEEE-ccCcceeeecccC
Q 001248 695 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS-EPNQCRSLRLPENLRATKISRLIF-TNSGNAILALASN 772 (1114)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~-s~~~~~l~~~~~d 772 (1114)
..|.++...... ....|.. ..+....+++ +|.....-+.+.+
T Consensus 258 -----------------------------~~i~v~~~~~qp~~~n~C~~-------~ng~Cs~lCl~~~~~~~~~C~C~~ 301 (619)
T 3s94_A 258 -----------------------------MDIHAFSQQRQPNATNPCGI-------DNGGCSHLCLMSPVKPFYQCACPT 301 (619)
T ss_dssp -----------------------------SEEEECCGGGSCCCCCTTTT-------TGGGCSSEEEECSSTTSEEEECCT
T ss_pred -----------------------------cEEEEEccccCCCccccccC-------CCCcccceEECCCCCCCceEeCCc
Confidence 011111110000 0000000 0011111111 1211111111222
Q ss_pred ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccc
Q 001248 773 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 852 (1114)
Q Consensus 773 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~ 852 (1114)
|.. + .....+|.. ....+|+.+..+.|+..++......
T Consensus 302 g~~--------------------------------l--------~~d~~~C~~--~~~~~Ll~~~~~~i~~i~l~~~~~~ 339 (619)
T 3s94_A 302 GVK--------------------------------L--------LENGKTCKD--GATELLLLARRTDLRRISLDTPDFT 339 (619)
T ss_dssp TCC--------------------------------B--------CTTSSCBCS--SCSEEEEEEESSCEEEEESSSTTCC
T ss_pred hhe--------------------------------e--------cccCcccCC--CCceEEEEEcccceEEEecCCCccc
Confidence 110 0 001111111 1234666666778888888765422
Q ss_pred c-ccC-CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCC-EEEEEeCCCcEEEE
Q 001248 853 A-TFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVW 929 (1114)
Q Consensus 853 ~-~~~-~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~D~~v~iw 929 (1114)
. .+. ..-..+.+++|++.++.++.+-...+.|+.+++........+........++++.+.+. +.++-+..+.|.+.
T Consensus 340 ~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~ 419 (619)
T 3s94_A 340 DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVT 419 (619)
T ss_dssp CEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEE
Confidence 1 121 12345789999985566666555678899999876433333333335677899987555 44555567889999
Q ss_pred eCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE---eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCC
Q 001248 930 SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD 1006 (1114)
Q Consensus 930 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d 1006 (1114)
++++.... .+. ... ......+++.|...+|..+ ....|...++..... ..+. ...-.....|+++++
T Consensus 420 ~~~G~~~~---~l~--~~~---l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~-~~~l~~P~GlalD~~ 489 (619)
T 3s94_A 420 RLNGTMRK---ILI--SED---LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLV-NTSLGWPNGLALDYD 489 (619)
T ss_dssp ETTSCSCE---EEE--CTT---CCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE-CSSCSCEEEEEEETT
T ss_pred eCCCCeEE---EEE--ECC---CCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEE-eCCCCCCeeeEEccc
Confidence 98864321 111 111 1356899999974444443 235677777654332 2332 122457889999998
Q ss_pred CCEEEEEEc-CCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe-CCCcEEEEeccCCC
Q 001248 1007 SQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESE 1081 (1114)
Q Consensus 1007 g~~l~s~s~-Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~-~Dg~v~vW~i~~~~ 1081 (1114)
+..|+.+.. .+.|..++++.......+... + ..|..++... + .|+... ..+.|...+..+++
T Consensus 490 ~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--l--------~~P~glav~~--~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 490 EGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK--I--------PHIFGFTLLG--D-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp TTEEEEEETTTTEEEEEESSSCCCEEEEECC--C--------CSSCCEEEET--T-EEEEECTTSSCEEEEESSSCC
T ss_pred CCEEEEEECCCCEEEEEecCCCceEEEeccC--C--------CCcEEEEEEC--C-EEEEeecCCCeEEEEEcCCCc
Confidence 888877754 467999998654332222100 1 1233455543 3 455444 45678888877775
No 228
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.16 E-value=5.1e-10 Score=122.75 Aligned_cols=177 Identities=11% Similarity=0.033 Sum_probs=130.9
Q ss_pred CeeEEEEcCCCCeEEEEeCCCeEEEEEccCCce--------eeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEE
Q 001248 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE--------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV 493 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~~dg~i~iwd~~~~~~--------~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~i 493 (1114)
.++.+++++...++++|+.++ +++|+++.... .... ....+.. |++++| |++ +|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence 689999999999999999986 66799765331 1111 1224666 999999 888 67777 7899999
Q ss_pred EeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeec
Q 001248 494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR 573 (1114)
Q Consensus 494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~ 573 (1114)
||+.+.........|...+.++.+... .+++++.||.|.+||+....... ..
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~-------------------- 162 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LA-------------------- 162 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EE--------------------
T ss_pred EEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----cc--------------------
Confidence 999887766677778888888775432 28888999999999998654321 11
Q ss_pred ccceeEEEecCCCCEEEEEeCCCeEEEEECCCcce--EEEecc----C---CCCCCcCeEEEcCCCCEEEEEe
Q 001248 574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDA----D---GGLPASPRIRFNKDGCLLAVST 637 (1114)
Q Consensus 574 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~----~---~~~~~v~~~~~s~d~~~l~~~~ 637 (1114)
..+.+++|+|+| ++.|..||.+++|+...++. ..++.. + ++...|.++.|.+++.++++-.
T Consensus 163 -~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 163 -QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp -ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred -CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 145666777776 67899999999999887775 555621 1 1345789999999998888643
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.13 E-value=5.8e-09 Score=125.77 Aligned_cols=79 Identities=11% Similarity=0.058 Sum_probs=58.6
Q ss_pred CeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccc-cCeeEEEEcCCCCEE
Q 001248 839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL 917 (1114)
Q Consensus 839 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l 917 (1114)
|.|..||+.+++.+..+.. ...+....+.. ++.++++++.||.+++||..+|+.+..+.... ....-+.|..+|+.+
T Consensus 457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cEEEEEeCCCCcEEeecCC-CCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 6799999999998877652 23344455666 66788889999999999999999998886433 333456777888755
Q ss_pred EE
Q 001248 918 VS 919 (1114)
Q Consensus 918 ~s 919 (1114)
+.
T Consensus 535 v~ 536 (677)
T 1kb0_A 535 VS 536 (677)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 230
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.13 E-value=5.5e-09 Score=127.50 Aligned_cols=242 Identities=11% Similarity=0.085 Sum_probs=157.1
Q ss_pred cccceEEEEEccCcceeeecc-----cCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEE
Q 001248 750 RATKISRLIFTNSGNAILALA-----SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF 824 (1114)
Q Consensus 750 ~~~~i~~l~~s~~~~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v 824 (1114)
+...+..+.|||||++++.+. ....|++||+. +|..+...+ .......+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~----------------------tg~~~~~~~----~~~k~~~~ 180 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE----------------------SKQPLETPL----KDVKFSGI 180 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT----------------------TCSEEEEEE----EEEESCCC
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECC----------------------CCCCCcccc----CCceeccE
Confidence 445788999999999888432 23567776654 444332111 11113567
Q ss_pred EEeeCCCEEEEEe-CC-------------eEEEEEcCCCcc----ccccCC-CCCCeEEEEEecCCCcEEEEEeC----C
Q 001248 825 ALSKNDSYVMSAS-GG-------------KISLFNMMTFKT----MATFMP-PPPAATFLAFHPQDNNIIAIGMD----D 881 (1114)
Q Consensus 825 ~~s~d~~~l~~~~-dg-------------~i~iwd~~~~~~----~~~~~~-~~~~i~~l~~sp~d~~~la~g~~----d 881 (1114)
+|+ ||+.|+.++ +. .|++|++.+... +..... +......+.|+| ||++|+.... +
T Consensus 181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~ 258 (693)
T 3iuj_A 181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSG 258 (693)
T ss_dssp EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSC
T ss_pred EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCC
Confidence 899 999998887 53 399999987643 222333 445578899999 8887755432 3
Q ss_pred CcEEEEEcccce-EEEeecccccCeeEEEEcCCCCEEEEEe-CC---CcEEEEeCCCCccccccccccCCCCCCCCCCce
Q 001248 882 SSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSG-AD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 956 (1114)
Q Consensus 882 g~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 956 (1114)
..|+++|+.++. ....+..+....... |+++|..|+..+ .| +.|..|++.++.......+. .+.. .+.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~---~~~ 331 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---PERQ---QVL 331 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCS---SCE
T ss_pred cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---cCCC---CEE
Confidence 589999998763 345666666666655 666666655444 33 57999999876542222211 1111 233
Q ss_pred EEEEccCCcEEEE-E-eCC--eEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC----CeEEEEEcCCCe
Q 001248 957 RVQFHQDQIHFLV-V-HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCVFSAANLK 1028 (1114)
Q Consensus 957 ~v~fspdg~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D----g~I~vwd~~~~~ 1028 (1114)
.|++++++|+. . .++ .|.+|++.++. ...+.. .+...+..+.++++++.|+....+ +.|+.||+.+++
T Consensus 332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 332 --TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp --EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred --EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 89999999887 3 444 68999988554 344432 234567788889999887766555 889999998886
Q ss_pred ee
Q 001248 1029 LR 1030 (1114)
Q Consensus 1029 ~~ 1030 (1114)
..
T Consensus 408 ~~ 409 (693)
T 3iuj_A 408 IS 409 (693)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.12 E-value=2.8e-08 Score=111.63 Aligned_cols=158 Identities=8% Similarity=0.034 Sum_probs=98.8
Q ss_pred CCCeEEEEeCCCeEEEEEccCCceeeeeEeeccc-------cCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCccee
Q 001248 431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503 (1114)
Q Consensus 431 dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h-------~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~ 503 (1114)
++..|.+++.++.|..+|..+|+.+-.. .+... ...+.+.... ++. .++.++.++.|..+|..+|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeee-cCccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence 3667788888899999999999866432 22111 1223222222 344 46677788999999999999887
Q ss_pred EeeccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEec
Q 001248 504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583 (1114)
Q Consensus 504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~ 583 (1114)
.............. .+..++.++.++.|..+|..+++............ .. .... . ....
T Consensus 128 ~~~~~~~~~~~p~~----~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~-~~--~~~~-----------~--~~~~ 187 (376)
T 3q7m_A 128 QTKVAGEALSRPVV----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL-SL--RGES-----------A--PTTA 187 (376)
T ss_dssp EEECSSCCCSCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCC-----------C--CEEE
T ss_pred EEeCCCceEcCCEE----ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce-ee--cCCC-----------C--cEEE
Confidence 76543322111111 12478888899999999998887776554432110 00 0000 0 0011
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q 001248 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
+..++.++.++.|..+|..+|+.+.....
T Consensus 188 --~~~v~~g~~~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 188 --FGAAVVGGDNGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp --TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred --CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 23577788899999999999998877653
No 232
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.12 E-value=1.4e-08 Score=111.17 Aligned_cols=225 Identities=12% Similarity=-0.019 Sum_probs=145.8
Q ss_pred eEEEEEccCcc-eeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCE
Q 001248 754 ISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 832 (1114)
Q Consensus 754 i~~l~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~ 832 (1114)
..+..|+|++. .+++...++.|..|+... +..... . ....+.+++++++|++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~~~~~--~---~~~~v~~i~~~~dg~l 103 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS----------------------GRKTVH--A---LPFMGSALAKISDSKQ 103 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT----------------------TEEEEE--E---CSSCEEEEEEEETTEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC----------------------CcEEEE--E---CCCcceEEEEeCCCeE
Confidence 45678899754 455555678888877542 221111 0 2346889999999988
Q ss_pred EEEEeCCeEEEEEcCCCccccccCC----CCCCeEEEEEecCCCcEEEEEeC------CCcEEEEEcccceEEEeecccc
Q 001248 833 VMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLKGHS 902 (1114)
Q Consensus 833 l~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~la~g~~------dg~v~iwd~~~~~~~~~l~~h~ 902 (1114)
+++. ++.|.+||..+++....... ....+..++++| +|+++++... .+.|+.++ +++.. .+..+.
T Consensus 104 ~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~ 178 (326)
T 2ghs_A 104 LIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI 178 (326)
T ss_dssp EEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred EEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence 7765 45599999987765322211 123588999999 8887665432 24566666 55543 333344
Q ss_pred cCeeEEEEcCCCCEEEEE-eCCCcEEEEeCC--CC-ccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEE
Q 001248 903 KRITGLAFSHALNVLVSS-GADSQLCVWSSD--GW-EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAI 977 (1114)
Q Consensus 903 ~~V~~l~~s~d~~~l~s~-s~D~~v~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~i 977 (1114)
...++++|+||++.|+.+ +.++.|.+|+++ ++ .............. ...+..+++.++|.+.++. .++.|.+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~---~~~p~gi~~d~~G~lwva~~~~~~v~~ 255 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI---KGGMDGSVCDAEGHIWNARWGEGAVDR 255 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS---SSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC---CCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence 557899999999877554 557889999986 44 32111111111111 1245789999999877774 5688999
Q ss_pred EEcCCCceeeeeecCCCCcCeeEEEEC-CCCCEEEEEEcC
Q 001248 978 FETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLD 1016 (1114)
Q Consensus 978 wd~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~s~D 1016 (1114)
||. +++.+..+.. +...+++++|+ +|++.|++++..
T Consensus 256 ~d~-~g~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 256 YDT-DGNHIARYEV--PGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp ECT-TCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ECC-CCCEEEEEEC--CCCCcEEEEEecCCCCEEEEEecC
Confidence 998 5776666653 34579999998 898887666544
No 233
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.12 E-value=6.5e-09 Score=112.89 Aligned_cols=229 Identities=12% Similarity=0.042 Sum_probs=151.5
Q ss_pred ccceEEEEEccCcc-eeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC
Q 001248 751 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN 829 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d 829 (1114)
........|+++|+ .+++...++.|..|+.. +.... +.. +...+..++++++
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-----------------------g~~~~--~~~--~~~~~~gl~~d~d 96 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-----------------------GTVDV--LLD--ATAFTNGNAVDAQ 96 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-----------------------SCEEE--EEE--SCSCEEEEEECTT
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-----------------------CCEEE--EeC--CCCccceeeECCC
Confidence 34567889999998 45566667888888642 11100 000 3455788999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCCcccccc---CC-CCCCeEEEEEecCCCcEEEE----EeC-------------CCcEEEE
Q 001248 830 DSYVMSAS-GGKISLFNMMTFKTMATF---MP-PPPAATFLAFHPQDNNIIAI----GMD-------------DSSIQIY 887 (1114)
Q Consensus 830 ~~~l~~~~-dg~i~iwd~~~~~~~~~~---~~-~~~~i~~l~~sp~d~~~la~----g~~-------------dg~v~iw 887 (1114)
|+++++.. ++.|.+|+.. ++..... .+ ....+..++++| +|+++++ |.. .+.|+.|
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence 99777665 5789999985 4432211 11 113467899999 8888886 432 3568888
Q ss_pred EcccceEEEeecccccCeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEc
Q 001248 888 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 961 (1114)
Q Consensus 888 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fs 961 (1114)
|..+++..... .....+.++|+||++.|+.+... +.|.+|++............... ......+++.
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-----~~~pdgi~~d 247 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-----DGLPDGFCVD 247 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-----SSCCCSEEEC
T ss_pred cCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-----CCCCCeEEEC
Confidence 87777654433 44567899999999988877665 68999998764311111111111 1245678999
Q ss_pred cCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEE
Q 001248 962 QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1020 (1114)
Q Consensus 962 pdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~ 1020 (1114)
++|++.++. .+.|.+|+. +++.+..+... ..+.+++|+++++.|+.++.++..+
T Consensus 248 ~~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 248 RGGWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp TTSCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCCCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeEEE
Confidence 999955555 456999998 56666666532 2589999999999998888764333
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.10 E-value=1.2e-08 Score=123.29 Aligned_cols=404 Identities=12% Similarity=0.046 Sum_probs=209.8
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccC----------Ce-eEEEecCCCCeeEEEEecCCCCEEEEeCCCCc
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG----------GV-NDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~----------~V-~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~ 500 (1114)
+..|.+++.++.|.-+|..+|+.+-.. ..+.. .+ ..++. ++. .++.++.|+.|..+|.++|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKY---DPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEE---CCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEE---cCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCC
Confidence 566777778889999999999876532 21111 01 11222 244 47788889999999999999
Q ss_pred ceeEeecc--ccCEEEEeeccC-CCceEEEEEe------cCCeEEEEEcCCCCCeeeecCCC-CeeEE-----EEEec--
Q 001248 501 KQYIFEGH--EAPVYSVCPHHK-ENIQFIFSTA------LDGKIKAWLYDNLGSRVDYEAPG-RWCTT-----MAYSA-- 563 (1114)
Q Consensus 501 ~~~~~~~h--~~~v~~~~~~~~-~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~-~~v~~-----~~~s~-- 563 (1114)
.+..+... ......+...+. .++ .++.++ .++.|..||..+++.+..+.... ..... +....
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred EeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence 98777542 111111111110 133 444443 37899999999988877654211 00000 00000
Q ss_pred -CCC-eEEeeecccceeEEEecCCCCEEEEEeCCCe-------------------EEEEECCCcceEEEeccCCCC----
Q 001248 564 -DGT-RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS-------------------IKFWDMDSVQLLTSIDADGGL---- 618 (1114)
Q Consensus 564 -~g~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~---- 618 (1114)
.+. .............+.++++.+.++.+..++. |..||..+|+.+..+....+.
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 000 0000011112234677888888888877763 999999999999888643221
Q ss_pred ---CCcCeEEEcCCCC---EEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCccchhhhhhhhccccccc
Q 001248 619 ---PASPRIRFNKDGC---LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA 692 (1114)
Q Consensus 619 ---~~v~~~~~s~d~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1114)
..........+|+ .++.++.+|.++++|..+|+.....-........ .+...
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~--------~~~~~-------------- 359 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK--------GMDMK-------------- 359 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE--------EEETT--------------
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc--------ccCcc--------------
Confidence 0111112222565 7889999999999999999443221100000000 00000
Q ss_pred cccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccC
Q 001248 693 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN 772 (1114)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~d 772 (1114)
.+..+.... . .|.... ....+..|.......-..++|+|+...+++...+
T Consensus 360 --------------------~~~pi~~~~----~-~~~~~~-----~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~ 409 (689)
T 1yiq_A 360 --------------------TGRPILDEE----N-AAYWKN-----GKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHI 409 (689)
T ss_dssp --------------------TTEEEECHH----H-HCTTTS-----SSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred --------------------CCCcccchh----h-ccccCC-----CCeeEeCCCcccccCCCcceECCCCCEEEEeccc
Confidence 000000000 0 000000 0000111111112233458899988888877766
Q ss_pred ceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeC---CCEEEEEe-CCeEEEEEcCC
Q 001248 773 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN---DSYVMSAS-GGKISLFNMMT 848 (1114)
Q Consensus 773 g~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d---~~~l~~~~-dg~i~iwd~~~ 848 (1114)
....++...... .|....+.. ... .. +...|. +....... +|.|..||+.+
T Consensus 410 ~~~~~~~~~~~~--------------~~~~~~~~~---------~~g-~~-~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 410 MSAYYEHIPEAP--------------KRNPFKSMY---------QLG-LR-TGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp CCEEEECCSSCC--------------CCCSCTTSC---------CCS-SE-ECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cceeeeeccccc--------------ccccccccc---------ccC-cc-ccccCcccccCCCCCCCcceeEEEEECCC
Confidence 544443221000 011000000 000 00 000000 00000001 47899999999
Q ss_pred CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccC-eeEEEEcCCCCEE-EEEeC
Q 001248 849 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVL-VSSGA 922 (1114)
Q Consensus 849 ~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l-~s~s~ 922 (1114)
++.+..+..+.. ...-.++. .+.++++|+.||.|+.||..+|+.+.+++...+. ..-+.|+.||+.. ++.+.
T Consensus 465 G~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 465 QQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp TEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 998877654432 33335555 6778899999999999999999999888754332 3557788888754 44433
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.09 E-value=5.7e-09 Score=114.35 Aligned_cols=252 Identities=11% Similarity=-0.013 Sum_probs=154.1
Q ss_pred CCCeEEEEEecCC----cEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEe-----
Q 001248 369 VQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY----- 439 (1114)
Q Consensus 369 dg~~ll~tg~~dg----~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~----- 439 (1114)
+..+++++...++ +|.+.|..+++.+.... .+. .+ .+++||||+++.++.
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG~-~P--~i~~spDg~~lyVan~~~~r 88 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GAF-LS--LAVAGHSGSDFALASTSFAR 88 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECT-TC--EEEECTTSSCEEEEEEEETT
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEEEe------------------CCC-CC--ceEECCCCCEEEEEcccccc
Confidence 3344566666555 88899999999887422 222 24 799999999999886
Q ss_pred -----CCCeEEEEEccCCceeeeeEeeccc-----cCCeeEEEecCCCCeeEEEEecCCCCEEE--EeCCCCcceeEeec
Q 001248 440 -----SRHIVQIYSYHGGDEVRQHLEIDAH-----VGGVNDIAFSHPNKQLCVITCGDDKTIKV--WDATNGAKQYIFEG 507 (1114)
Q Consensus 440 -----~dg~i~iwd~~~~~~~~~~~~l~~h-----~~~V~~v~~s~d~~~~~l~s~~~d~~i~i--wd~~~~~~~~~~~~ 507 (1114)
.++.|.+||..+++.+..+. +.+. ......++|+|||++++++..+.+..|.+ +|+.+ +.++..
T Consensus 89 ~~~G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v 164 (368)
T 1mda_H 89 SAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS 164 (368)
T ss_dssp TTSSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC
T ss_pred cccCCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC
Confidence 36889999999998776432 2210 12356899999999633222233567888 99877 444431
Q ss_pred cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC----CCCee-----eecCCCCeeEEEEEecCCCeE-Eee------
Q 001248 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN----LGSRV-----DYEAPGRWCTTMAYSADGTRT-YQG------ 571 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~----~~~~~-----~~~~~~~~v~~~~~s~~g~~~-~~~------ 571 (1114)
- +. ..+.+... ..+++.+.|+.+.+.|+.+ ..... .+.....+. . .+++... +..
T Consensus 165 ~-~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~~~V~v 235 (368)
T 1mda_H 165 A-SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVASSILQ 235 (368)
T ss_dssp S-SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBSSCCEE
T ss_pred C-Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcCCEEEE
Confidence 1 11 11222222 2445556677777777765 11111 000001111 1 2221111 000
Q ss_pred -------------------------ecccceeEEEecCCCCEEEEEeC---------CCeEEEEECCCcceEEEeccCCC
Q 001248 572 -------------------------FRKRSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLLTSIDADGG 617 (1114)
Q Consensus 572 -------------------------~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~ 617 (1114)
........+.+++++++++.+.. ++.+.++|..+++.+..+....
T Consensus 236 iD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~- 314 (368)
T 1mda_H 236 GDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH- 314 (368)
T ss_dssp EECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-
T ss_pred EECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-
Confidence 00111122678999988887543 2456699999999998887543
Q ss_pred CCCcCeEEEcCCCC-EEEEEe-CCCcEEEEEccCCccceeecc
Q 001248 618 LPASPRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTFE 658 (1114)
Q Consensus 618 ~~~v~~~~~s~d~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 658 (1114)
....++|+|||+ ++++.. .++.|.++|+.++ +.++.+.
T Consensus 315 --~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~ 354 (368)
T 1mda_H 315 --DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE 354 (368)
T ss_dssp --EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred --CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence 368899999998 556666 5899999999998 5566554
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.09 E-value=3.3e-08 Score=108.01 Aligned_cols=233 Identities=11% Similarity=0.117 Sum_probs=149.0
Q ss_pred EEe--eCCCEEEEEe--CCeEEEEEcCCC----ccccccC-------CCCCCeEEEEEecCCCcEEEEEeCC------Cc
Q 001248 825 ALS--KNDSYVMSAS--GGKISLFNMMTF----KTMATFM-------PPPPAATFLAFHPQDNNIIAIGMDD------SS 883 (1114)
Q Consensus 825 ~~s--~d~~~l~~~~--dg~i~iwd~~~~----~~~~~~~-------~~~~~i~~l~~sp~d~~~la~g~~d------g~ 883 (1114)
.++ .++++|++.+ +++|.++|+.+. +..+++. ........+..+| +| +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 346 8899988887 789999999754 3334342 1112456678889 77 66666555 78
Q ss_pred EEEEEcccceEEEeeccccc---CeeEEEEcCCCCEEEEEe-------------------CCCcEEEEeCCCCccccccc
Q 001248 884 IQIYNVRVDEVKSKLKGHSK---RITGLAFSHALNVLVSSG-------------------ADSQLCVWSSDGWEKQKNRF 941 (1114)
Q Consensus 884 v~iwd~~~~~~~~~l~~h~~---~V~~l~~s~d~~~l~s~s-------------------~D~~v~iwd~~~~~~~~~~~ 941 (1114)
|.++|..+++.+.++..-.. --..+.|+|+++.+++.. .+.+|.+||+.+++....
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t-- 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS-- 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE--
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE--
Confidence 99999999999988863222 234688999999999885 368899999998543221
Q ss_pred cccCCCCCCCCCCceEEEE--ccCCcEEEEE-------eCCeEEEEEcCCCcee--eeeecCC----------------C
Q 001248 942 LQIPTGRTPTAQSDTRVQF--HQDQIHFLVV-------HETQLAIFETTKLECV--KQWVPRE----------------S 994 (1114)
Q Consensus 942 ~~~~~~~~~~~~~i~~v~f--spdg~~l~~~-------~d~~i~iwd~~~~~~~--~~~~~~~----------------h 994 (1114)
+...... .....+.| +|+|+++.++ .+++|.+|....++.. ..+.... -
T Consensus 244 I~vg~~g----~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEEN----RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTE----EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCC----CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 2221000 12345555 9999998873 3457777665543211 1110000 0
Q ss_pred CcCeeEEEECCCCCEEEEEEc-CCeEEEEEcC---CCeeeEEeCCCccc-----CCCCCCCCccceEEEecCCCCCeEEE
Q 001248 995 SAPITHATFSCDSQLVYACFL-DATVCVFSAA---NLKLRCRINPSAYL-----PAGVSSSNVHPLVIAAHPQEPNEFAL 1065 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~-Dg~I~vwd~~---~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~d~~~l~s 1065 (1114)
...+..|.+|+||++|++++. .+.|.+||+. +.+++.++...... +.|. .....|-.+.++| ||++|++
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~-~~~ggPr~~~lSp-DGk~LyV 397 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH-KLTGAPQMLEISR-DGRRVYV 397 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC-CCCSCCCCEEECT-TSSEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc-cCCCCCCEEEEcC-CCCEEEE
Confidence 245789999999999988875 5789999986 34566655422100 0010 0001345788999 6888888
Q ss_pred Ee
Q 001248 1066 GL 1067 (1114)
Q Consensus 1066 ~~ 1067 (1114)
+.
T Consensus 398 aN 399 (462)
T 2ece_A 398 TN 399 (462)
T ss_dssp EC
T ss_pred Ec
Confidence 87
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.06 E-value=1.5e-07 Score=105.67 Aligned_cols=208 Identities=9% Similarity=0.004 Sum_probs=126.2
Q ss_pred CCeEEEEEcCCCccccccCCCCCCe-----EEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccccc-------C-
Q 001248 838 GGKISLFNMMTFKTMATFMPPPPAA-----TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-------R- 904 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~-------~- 904 (1114)
++.|..+|..+++.+.......... ...... + ..+++++.+|.|..+|..+|+.+........ .
T Consensus 152 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 152 NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 6667777776666655443221110 122222 2 3577788899999999999988766543211 0
Q ss_pred --e-eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcC
Q 001248 905 --I-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 981 (1114)
Q Consensus 905 --V-~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~ 981 (1114)
+ ..... .+..++.++.++.+..+|..+++..-... . .....+.. .++..++.+.++.+..+|..
T Consensus 229 ~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~---~-------~~~~~~~~-~~~~l~~~~~~g~l~~~d~~ 295 (376)
T 3q7m_A 229 SDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRE---L-------GSVNDFIV-DGNRIYLVDQNDRVMALTID 295 (376)
T ss_dssp -CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEEC---C-------CCEEEEEE-ETTEEEEEETTCCEEEEETT
T ss_pred cccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeecc---C-------CCCCCceE-ECCEEEEEcCCCeEEEEECC
Confidence 1 11111 24677788889999999998876432111 0 11233333 24444444678899999999
Q ss_pred CCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC
Q 001248 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1061 (1114)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1061 (1114)
+++......... ...+..... .+..|++++.+|.|+++|..+|+.+.+.... .+ . +.. .... .+.
T Consensus 296 tG~~~w~~~~~~-~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~----~~---~-~~~-~~~~---~~~ 360 (376)
T 3q7m_A 296 GGVTLWTQSDLL-HRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVD----SS---G-FQT-EPVA---ADG 360 (376)
T ss_dssp TCCEEEEECTTT-TSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC----TT---C-BCS-CCEE---ETT
T ss_pred CCcEEEeecccC-CCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecC----CC---c-cee-CCEE---ECC
Confidence 998765543111 222333333 3567888999999999999999998876621 11 1 110 1111 146
Q ss_pred eEEEEeCCCcEEEEe
Q 001248 1062 EFALGLSDGGVHVFE 1076 (1114)
Q Consensus 1062 ~l~s~~~Dg~v~vW~ 1076 (1114)
.|++++.||.|+.|+
T Consensus 361 ~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 361 KLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEBTTSCEEEEE
T ss_pred EEEEEeCCCEEEEEe
Confidence 788899999999987
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.06 E-value=7.8e-09 Score=113.89 Aligned_cols=180 Identities=14% Similarity=0.169 Sum_probs=109.9
Q ss_pred EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 426 l~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
+.+..+|. |..++.++.|..|| .+++... ....+...+.++...++|. +..++.+ |..+|. +++.+..+
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~---~~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKW---FFKSGEIIECRPSIGKDGT---IYFGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCEEE---SSCGGGEEEECCEETTTTE---ECCSSCE--EEEECC-CGGGGGGS
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcEEE---EEecCCCcccceEEecCCc---EEEecCc--EEEECC-CCcEEEEE
Confidence 44545554 55566778899999 7777544 2333444567788877776 4555555 889995 77766555
Q ss_pred eccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCC
Q 001248 506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585 (1114)
Q Consensus 506 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~ 585 (1114)
...........+. + ..++.++.++.|..+|.. +............+.++...+++.
T Consensus 94 ~~~~~~~~~~~~~---~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~------------------- 149 (330)
T 3hxj_A 94 DTKKAIVSDFTIF---E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT------------------- 149 (330)
T ss_dssp CC-----CCEEEE---T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-------------------
T ss_pred ECCCCcccCceEE---C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-------------------
Confidence 4333222222322 2 467778888999999887 554444443333333333333333
Q ss_pred CCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
+..++.++.|..||.. ++.+..+.... ..+.++.+.+++.+++. + +.+..+| .++
T Consensus 150 ---l~vgt~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g 204 (330)
T 3hxj_A 150 ---IYVGSNDNYLYAINPD-GTEKWRFKTND--AITSAASIGKDGTIYFG-S--DKVYAIN-PDG 204 (330)
T ss_dssp ---EEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTCCEEEE-S--SSEEEEC-TTS
T ss_pred ---EEEEcCCCEEEEECCC-CCEeEEEecCC--CceeeeEEcCCCEEEEE-e--CEEEEEC-CCC
Confidence 6778888999999998 87776665442 34667777777775544 3 6777777 444
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.02 E-value=8.1e-08 Score=105.02 Aligned_cols=248 Identities=13% Similarity=0.169 Sum_probs=153.2
Q ss_pred EEc--CCCCeEEEEEecCCcEEEEEcCCc----ceeEEeeeeeeccCCCCcccccccccCCC-CCeeEEEEcCCCCeEEE
Q 001248 365 DFH--PVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 365 ~~s--pdg~~ll~tg~~dg~v~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las 437 (1114)
.++ +++++|+++|..+++|.|+|+.+. +.... +. ...+..... ..-..+..+||| ++++
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~--ie-----------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs 153 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKV--IE-----------PEEVKKVSGYSRLHTVHCGPDA-IYIS 153 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEE--EC-----------HHHHHHHHCEEEEEEEEECSSC-EEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeee--ec-----------hhhcccccCCCcccceeECCCe-EEEE
Confidence 447 899999999999999999999754 22211 10 000110111 134567888999 6666
Q ss_pred EeCC------CeEEEEEccCCceeeeeEeecccc-CCeeEEEecCCCCeeEEEEec-------------------CCCCE
Q 001248 438 AYSR------HIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG-------------------DDKTI 491 (1114)
Q Consensus 438 ~~~d------g~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~-------------------~d~~i 491 (1114)
+..+ +.|.+.|..+++.+.... ..+.. .--+.+.|+|+++ .+++.. .+.+|
T Consensus 154 ~~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V 230 (462)
T 2ece_A 154 ALGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRI 230 (462)
T ss_dssp EEEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred cCCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEE
Confidence 5444 789999999988776332 22222 2234688999999 566663 36789
Q ss_pred EEEeCCCCcceeEeecc--ccCEEEEeeccCCCceEEEEEe------cCCeEEEEEcCCCCCeeeecCCCCeeEEEEEec
Q 001248 492 KVWDATNGAKQYIFEGH--EAPVYSVCPHHKENIQFIFSTA------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 563 (1114)
Q Consensus 492 ~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 563 (1114)
.+||+.+++.+.++..- ......+.|.+++++++++.++ .+++|.+|..+.+. ... ...+.+.+
T Consensus 231 ~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~-------~~vIdi~~ 302 (462)
T 2ece_A 231 HFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNA-------EKVIEIPA 302 (462)
T ss_dssp EEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEE-------EEEEEECC
T ss_pred EEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeE-------EEEEeCCC
Confidence 99999999888887642 1334556666677888877776 56788888775421 100 01111111
Q ss_pred CC-CeEE----eee--cccceeEEEecCCCCEEEEEe-CCCeEEEEECCC---cceEEEeccCCCC------------CC
Q 001248 564 DG-TRTY----QGF--RKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDS---VQLLTSIDADGGL------------PA 620 (1114)
Q Consensus 564 ~g-~~~~----~~~--~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~---~~~~~~~~~~~~~------------~~ 620 (1114)
.. ...+ .+. .......+.+++++++|+++. ..+.|.+||+.. .+.+..+...+.. ..
T Consensus 303 ~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~gg 382 (462)
T 2ece_A 303 EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGA 382 (462)
T ss_dssp EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSC
T ss_pred ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCC
Confidence 00 0000 000 012345577788887887766 578999999853 3555555443210 12
Q ss_pred cCeEEEcCCCCEEEEEe
Q 001248 621 SPRIRFNKDGCLLAVST 637 (1114)
Q Consensus 621 v~~~~~s~d~~~l~~~~ 637 (1114)
-..++++|||++|+++.
T Consensus 383 Pr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 383 PQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSSEEEEEC
T ss_pred CCEEEEcCCCCEEEEEc
Confidence 47899999999999987
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.01 E-value=2.5e-08 Score=113.08 Aligned_cols=240 Identities=12% Similarity=0.085 Sum_probs=162.5
Q ss_pred EEEee-----CCCEEEEEe--CCeEEEEEcCCCccccccCC-CCCCeEEEEE-e-cCCCcEEEEEe--------------
Q 001248 824 FALSK-----NDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAF-H-PQDNNIIAIGM-------------- 879 (1114)
Q Consensus 824 v~~s~-----d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~-s-p~d~~~la~g~-------------- 879 (1114)
..+|. ||+++.+.. ++.|.+.|+.+.++...+.. ....+..+++ + | ++.++.+++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccc
Confidence 56665 999999887 57899999999998774432 2245788887 5 8 777777774
Q ss_pred ----CCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC-------------------------------
Q 001248 880 ----DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------------------------------- 924 (1114)
Q Consensus 880 ----~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~------------------------------- 924 (1114)
.++.+.+.|..+.+.+.++.--. .-..++++|||+++++++.+.
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 34589999999998887775322 346788999999999988653
Q ss_pred -------cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCc-----------
Q 001248 925 -------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----------- 984 (1114)
Q Consensus 925 -------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~----------- 984 (1114)
.|.|.|..+.+... ....+..+ ....++.++|||++++++ .+.+|.++|+.+.+
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~-~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSL-FTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCS-SEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred CCeeEECcEEEEeCcccCCce-eEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 35555555411000 00011111 134789999999999985 67789999999763
Q ss_pred -eeeeeecCCCCcCeeEEEECCCCCEEE-EEEcCCeEEEEEcCC----------CeeeEEeCCCcccCCCCCCCCccceE
Q 001248 985 -CVKQWVPRESSAPITHATFSCDSQLVY-ACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSSNVHPLV 1052 (1114)
Q Consensus 985 -~~~~~~~~~h~~~v~~l~~s~dg~~l~-s~s~Dg~I~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~ 1052 (1114)
....... ......++|+||| +++ +...|+.|.+||+++ ...+.++..+ +.| ||. -..+.
T Consensus 322 ~v~~~v~v---G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqp-Gh~---~~~~g 392 (595)
T 1fwx_A 322 AVVAEPEL---GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-GHL---KTVMG 392 (595)
T ss_dssp GEEECCBC---CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-EEE---EETTT
T ss_pred ceEEEcCC---CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccc-ccc---eeccc
Confidence 2233322 4578999999999 554 555789999999987 5566666632 222 110 11123
Q ss_pred EEecCCCCCeEEEEeCCC--cE-----------EEEeccCCC
Q 001248 1053 IAAHPQEPNEFALGLSDG--GV-----------HVFEPLESE 1081 (1114)
Q Consensus 1053 ~~~~~~d~~~l~s~~~Dg--~v-----------~vW~i~~~~ 1081 (1114)
++.+| ||++|++...-. .+ .++||+.++
T Consensus 393 ~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 393 ETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 45667 789998876422 22 889997777
No 241
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.01 E-value=0.00012 Score=86.73 Aligned_cols=508 Identities=7% Similarity=-0.063 Sum_probs=262.2
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
.-..+.+++|++++.++..+-..++.|..++++...... ++.........||+.+.+..|.
T Consensus 35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY 95 (628)
T 4a0p_A 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLY 95 (628)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEE
T ss_pred CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEE
Confidence 335688999999888777777778899999987653322 1111123567899988666555
Q ss_pred EE-eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEE
Q 001248 437 VA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515 (1114)
Q Consensus 437 s~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 515 (1114)
.+ ...+.|.+.+++...... .+...-.....|++.|....+++.--+..+.|...++.... ...+...-.....+
T Consensus 96 ~tD~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~Gl 171 (628)
T 4a0p_A 96 WADTGTNRIEVSKLDGQHRQV---LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGL 171 (628)
T ss_dssp EEETTTTEEEEEETTSTTCEE---EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEE
T ss_pred EEECCCCEEEEEecCCCcEEE---EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceE
Confidence 44 456789999987654221 12233345789999997665333322445678888865433 34433344567788
Q ss_pred eeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCC
Q 001248 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD 595 (1114)
Q Consensus 516 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 595 (1114)
++.+.. +.+.++-...+.|...|++..... .+.........+++ .. +..+++-...
T Consensus 172 alD~~~-~~LY~aD~~~~~I~~~d~dG~~~~-v~~~~l~~P~glav---------------------~~-~~ly~tD~~~ 227 (628)
T 4a0p_A 172 TIDYAK-RRLYWTDLDTNLIESSNMLGLNRE-VIADDLPHPFGLTQ---------------------YQ-DYIYWTDWSR 227 (628)
T ss_dssp EEETTT-TEEEEEETTTTEEEEEETTSCSCE-EEEECCSCEEEEEE---------------------ET-TEEEEEETTT
T ss_pred EEcccc-CEEEEEECCCCEEEEEcCCCCceE-EeeccCCCceEEEE---------------------EC-CEEEEecCCC
Confidence 876543 245555566778888888653332 11111112222322 22 2233444457
Q ss_pred CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccccCCCCCCCCc
Q 001248 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI 675 (1114)
Q Consensus 596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1114)
+.|...|..+++....+.... .....+........- +. + .+.. -.+... .. ++
T Consensus 228 ~~I~~~dk~tg~~~~~l~~~~--~~p~~i~v~~~~~q~--~~--------n-----~C~~-~ng~C~--------~~-C~ 280 (628)
T 4a0p_A 228 RSIERANKTSGQNRTIIQGHL--DYVMDILVFHSSRQS--GW--------N-----ECAS-SNGHCS--------HL-CL 280 (628)
T ss_dssp TEEEEEETTTCCSCEEEECSC--CSCCEEEEECGGGSC--CC--------C-----TTTT-TGGGCS--------SE-EE
T ss_pred CEEEEEECCCCCceEEEecCC--CCcceeeeeeecccc--cc--------e-----Eecc-CCCCcc--------hh-hh
Confidence 888888877776655554221 112222221110000 00 0 0000 000000 00 00
Q ss_pred cchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCccccccceE
Q 001248 676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS 755 (1114)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 755 (1114)
.. +.+.+ .+.+..|. .+.. ...+
T Consensus 281 ~~----------------------------------~~~~~-~C~C~~g~----~l~~------------------d~~~ 303 (628)
T 4a0p_A 281 AV----------------------------------PVGGF-VCGCPAHY----SLNA------------------DNRT 303 (628)
T ss_dssp EE----------------------------------TTTEE-EEECSTTC----EECT------------------TSSC
T ss_pred cC----------------------------------CCCCe-eEEcCCCc----Eecc------------------cCCc
Confidence 00 00000 00000000 0000 0000
Q ss_pred EEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEE
Q 001248 756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS 835 (1114)
Q Consensus 756 ~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~ 835 (1114)
+. .+ ...++.+. ...|+-..+.... ... ....+. .-..+.+++|.+.+..|..
T Consensus 304 C~--~~-~~~Ll~s~-~~~i~~i~l~~~~-------------------~~~-~~l~~~---~~~~~~~ld~d~~~~~iy~ 356 (628)
T 4a0p_A 304 CS--AP-TTFLLFSQ-KSAINRMVIDEQQ-------------------SPD-IILPIH---SLRNVRAIDYDPLDKQLYW 356 (628)
T ss_dssp EE--CC-SSEEEEEE-TTEEEEECCCTTC-------------------CCC-EECCCT---TCSCEEEEEEETTTTEEEE
T ss_pred Cc--cc-cceeeeec-cceEEEEeccccc-------------------Cce-EEEEeh---hcCCceEEEEecCCCeEEE
Confidence 00 01 11222222 2233322221000 000 000011 2244778899988777777
Q ss_pred Ee--CCeEEEEEcCCCccccccCC------CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee-cccccCee
Q 001248 836 AS--GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRIT 906 (1114)
Q Consensus 836 ~~--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~ 906 (1114)
+. .+.|+.++.........+.. ....+..+|+....+++..+-+..+.|.+.++. |+....+ ........
T Consensus 357 sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr 435 (628)
T 4a0p_A 357 IDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPR 435 (628)
T ss_dssp EETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEE
T ss_pred EecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCcee
Confidence 76 57898888764332222322 234688999998446666677778899999986 4444333 33446688
Q ss_pred EEEEcCCCCEE-EEEeCCC--cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcC
Q 001248 907 GLAFSHALNVL-VSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT 981 (1114)
Q Consensus 907 ~l~~s~d~~~l-~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~ 981 (1114)
+|++.|...+| .+-.... .|...+++...... ... .. ......+++.+++..|..+ ..+.|..+++.
T Consensus 436 ~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~---~~---l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d 507 (628)
T 4a0p_A 436 AVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFF---SG---LSKPIALALDSRLGKLFWADSDLRRIESSDLS 507 (628)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EEC---SS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEe---cc---CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 99999944444 4433222 56666676533211 111 11 1245899999987777764 45789999985
Q ss_pred CCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
. ...+.+.. ........|++.. +...++-...+.|...|..+|+....+.
T Consensus 508 G-~~r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 508 G-ANRIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp S-CSCEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred C-CceEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 4 43444432 2234567888754 3334444455778888888777554443
No 242
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.01 E-value=0.00017 Score=85.34 Aligned_cols=496 Identities=9% Similarity=-0.006 Sum_probs=246.2
Q ss_pred cCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 356 ~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
..-..+.+++|++.+.+|+.+-...+.|..++++....... ++...-.....+|+.+.+..|
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~l 98 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKL 98 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTEE
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCEE
Confidence 34566889999998887666666678898888875421110 122222468899999966655
Q ss_pred EEE-eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEE
Q 001248 436 GVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVY 513 (1114)
Q Consensus 436 as~-~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~ 513 (1114)
..+ ...+.|.+.++++..... .+...-.....|++.|.+..+++.--+..+.|...++. |.....+ ...-....
T Consensus 99 y~~d~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 99 YWTDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEEETTTTEEEEEETTSCSCEE---EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEE
T ss_pred EEEeCCCCEEEEEECCCCCEEE---EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCc
Confidence 554 556889999988654221 12233445789999998775333322334667777755 4333333 23345667
Q ss_pred EEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe
Q 001248 514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG 593 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 593 (1114)
.+++.+.. +.+.++-...+.|...|++................. +++..+ ..+++-.
T Consensus 175 Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~g---------------------i~~~~~-~ly~td~ 231 (619)
T 3s94_A 175 GLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFA---------------------LTLFED-ILYWTDW 231 (619)
T ss_dssp EEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCC---------------------EEESSS-EEEEECT
T ss_pred EEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceE---------------------EEEeCC-EEEEecC
Confidence 78876543 345555555677888877642222111101111112 222222 2233334
Q ss_pred CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc-CCCCEEEEEeC--------CCcEEEEEccCCccceeecccccccc
Q 001248 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTN--------DNGIKILATSDGIRLLRTFENLAYDA 664 (1114)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~--------dg~i~iwd~~~~~~~~~~~~~~~~~~ 664 (1114)
..+.|...|..+++....+.... .....+.+. +..+- .+.. -..+.+-..... .
T Consensus 232 ~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~~~~qp--~~~n~C~~~ng~Cs~lCl~~~~~~-----------~-- 294 (619)
T 3s94_A 232 STHSILACNKYTGEGLREIHSDI--FSPMDIHAFSQQRQP--NATNPCGIDNGGCSHLCLMSPVKP-----------F-- 294 (619)
T ss_dssp TTCSEEEEESSSCCCCEECCSCC--CCCSEEEECCGGGSC--CCCCTTTTTGGGCSSEEEECSSTT-----------S--
T ss_pred CCCEEEEEECCCCcccEEEecCC--CCCcEEEEEccccCC--CccccccCCCCcccceEECCCCCC-----------C--
Confidence 56778888887776655543221 112233221 11000 0000 000000000000 0
Q ss_pred ccCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCcccc-C-CCcccccccCCCceeEEEeccCCCCccccc
Q 001248 665 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL-A-DVKPRITEESNDKSKVWKLTELSEPNQCRS 742 (1114)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~ 742 (1114)
.. +..+.+ . .+..+.... . ...+|+. +..+.|+..++........ .
T Consensus 295 ~~-------C~C~~g------------------~----~l~~d~~~C~~~~~~~Ll~-~~~~~i~~i~l~~~~~~~~--~ 342 (619)
T 3s94_A 295 YQ-------CACPTG------------------V----KLLENGKTCKDGATELLLL-ARRTDLRRISLDTPDFTDI--V 342 (619)
T ss_dssp EE-------EECCTT------------------C----CBCTTSSCBCSSCSEEEEE-EESSCEEEEESSSTTCCCE--E
T ss_pred ce-------EeCCch------------------h----eecccCcccCCCCceEEEE-EcccceEEEecCCCcccee--E
Confidence 00 000000 0 000011111 1 1222333 3345666666654322111 1
Q ss_pred cccCccccccceEEEEEccCcceee-ecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCc
Q 001248 743 LRLPENLRATKISRLIFTNSGNAIL-ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV 821 (1114)
Q Consensus 743 ~~~~~~~~~~~i~~l~~s~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v 821 (1114)
+.++ ....+..++|.+.+..|+ +-...+.|+.+++..... .. .+.. .-...
T Consensus 343 ~~~~---~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~----------------------~~-v~~~--~~~~p 394 (619)
T 3s94_A 343 LQLE---DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS----------------------QF-VVTA--QIAHP 394 (619)
T ss_dssp CCCS---CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------EE-EECS--SCSCC
T ss_pred Eecc---ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc----------------------EE-EEEC--CCCCc
Confidence 1111 234577899988555444 444467777666532100 00 0000 22456
Q ss_pred cEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEe-CCCcEEEEEcccceEEEee
Q 001248 822 PCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~iwd~~~~~~~~~l 898 (1114)
..+++...+..|..+. .+.|.+.++........+...-.....+++.|..|.+..+-. ..+.|...++.........
T Consensus 395 ~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~ 474 (619)
T 3s94_A 395 DGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV 474 (619)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred CceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE
Confidence 7899997666666655 588999998754322222333456899999994465555432 2356777776533222222
Q ss_pred cccccCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeE
Q 001248 899 KGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQL 975 (1114)
Q Consensus 899 ~~h~~~V~~l~~s~d~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i 975 (1114)
...-...++|++.+++..|..+. ..+.|...+++...... ... ... .....+++..+ +|..+ ..+.|
T Consensus 475 ~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~~---~~l---~~P~glav~~~--~ly~tD~~~~~I 544 (619)
T 3s94_A 475 NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV--LVE---DKI---PHIFGFTLLGD--YVYWTDWQRRSI 544 (619)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EEE---CCC---CSSCCEEEETT--EEEEECTTSSCE
T ss_pred eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE--Eec---cCC---CCcEEEEEECC--EEEEeecCCCeE
Confidence 33345678999998777776665 44678888887643321 111 111 12245555433 44443 45566
Q ss_pred EEEEcCCC
Q 001248 976 AIFETTKL 983 (1114)
Q Consensus 976 ~iwd~~~~ 983 (1114)
...|..++
T Consensus 545 ~~~~k~~g 552 (619)
T 3s94_A 545 ERVHKRSA 552 (619)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 66666655
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.91 E-value=4.7e-10 Score=125.10 Aligned_cols=190 Identities=13% Similarity=0.108 Sum_probs=108.4
Q ss_pred CCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCC
Q 001248 871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP 950 (1114)
Q Consensus 871 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 950 (1114)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.|+.|+.||..+++..............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 466888999999999999999999988876 56666667778888888899999999999876643211110000000
Q ss_pred CCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee
Q 001248 951 TAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1114)
Q Consensus 951 ~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~ 1029 (1114)
....+..++ .+++ +.++.+..||..+|+.+..+.. +. ...++|++..|++++.|+.|+.||..+|+.
T Consensus 85 -----~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 85 -----ASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp -----TCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred -----cCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 001112344 4444 6889999999999998766542 22 245677889999999999999999999998
Q ss_pred eEEeCCCcccCCCCCCCCccceEEEecCC--CCCeEEEEeCCCcEEEEeccCCCCcccCC
Q 001248 1030 RCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSDGGVHVFEPLESEGKWGVP 1087 (1114)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--d~~~l~s~~~Dg~v~vW~i~~~~~~~~~~ 1087 (1114)
+.++....+ . ..++..+ -...+++++.||.|+.||..+|+..|...
T Consensus 153 ~W~~~~~~~----------~--~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 153 RWNATYFDY----------A--ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCEEEEEEE----------C--CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEeEecccc----------c--CccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 766541111 1 1112220 01567888999999999999999888753
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.89 E-value=2.1e-07 Score=102.33 Aligned_cols=296 Identities=12% Similarity=0.075 Sum_probs=180.3
Q ss_pred CcccccccCCCceeEEEeccCCCCccccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccc
Q 001248 714 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA 793 (1114)
Q Consensus 714 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 793 (1114)
...+..++.++.+..|| .+...... .. .....+.++.+.+++. +.+++.+ +..++....
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~~~~~---~~----~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g~---------- 88 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGSVKWF---FK----SGEIIECRPSIGKDGT-IYFGSDK--VYAINPDGT---------- 88 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSCEEES---SC----GGGEEEECCEETTTTE-ECCSSCE--EEEECCCGG----------
T ss_pred CCeEEEEcCCCEEEEEC-CCCcEEEE---Ee----cCCCcccceEEecCCc-EEEecCc--EEEECCCCc----------
Confidence 44566777788888888 54332111 11 1234456777777776 4444444 666553110
Q ss_pred cccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCC
Q 001248 794 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 872 (1114)
Q Consensus 794 ~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~ 872 (1114)
.+|....+ .......++. ++ .+.+++ ++.|..+|.. ++...........+.++...+ ++
T Consensus 89 ----~~~~~~~~------------~~~~~~~~~~-~~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g 148 (330)
T 3hxj_A 89 ----EKWRFDTK------------KAIVSDFTIF-ED-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DG 148 (330)
T ss_dssp ----GGGGSCC-----------------CCEEEE-TT-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TS
T ss_pred ----EEEEEECC------------CCcccCceEE-CC-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CC
Confidence 12222111 1112223333 44 455555 8999999988 776666555555566777776 56
Q ss_pred cEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001248 873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 952 (1114)
Q Consensus 873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 952 (1114)
. |.+|+.++.|..||.. ++.+..+......+.++.+.+++.+++.. +.|..|| .+++.... .... .
T Consensus 149 ~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~----~~~~----~ 214 (330)
T 3hxj_A 149 T-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWN----FYAG----Y 214 (330)
T ss_dssp C-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEE----ECCS----S
T ss_pred E-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEE----EccC----C
Confidence 5 5557888999999998 87777776666678888888888765544 7799999 55432211 1111 1
Q ss_pred CCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEE
Q 001248 953 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1032 (1114)
Q Consensus 953 ~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~ 1032 (1114)
..+.++.+.++|.+.+.+.++.+..+|. +++.+..+.. ....+.++.+.+++ .|..++.+|.|..+|. +++.+..
T Consensus 215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~--~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~ 289 (330)
T 3hxj_A 215 WTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKT--GKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWN 289 (330)
T ss_dssp CCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEEC--SSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEE
T ss_pred cceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeC--CCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEE
Confidence 2467888899998877777889999974 5555555442 23344556666566 4666778889999995 7777766
Q ss_pred eCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1033 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1033 ~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+. .+. ..+. ++..++ + ..|..|+.+|.+++...+..+
T Consensus 290 ~~----~~~----~~~~--~~~~d~-~-g~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 290 FE----TGS----WIIA--TPVIDE-N-GTIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EE----CSS----CCCS--CCEECT-T-CCEEEECTTSCEEEEEC----
T ss_pred EE----cCC----cccc--ceEEcC-C-CEEEEEcCCCeEEEEeccccc
Confidence 54 221 1133 344444 3 457779999999998876654
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.87 E-value=6.5e-10 Score=123.94 Aligned_cols=186 Identities=12% Similarity=0.022 Sum_probs=111.7
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccC-ee
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-IT 906 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~ 906 (1114)
++..+++++ ||.|+.||..+++.+..+.. ..+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 566777777 89999999999999888775 4555555666 6778888889999999999999887776544221 11
Q ss_pred -EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCc
Q 001248 907 -GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE 984 (1114)
Q Consensus 907 -~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~ 984 (1114)
+.++. ++..|++++.|+.|+.||..+++.... ...+ ....++|++..+++ +.++.|..||..+|+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~-----~~~~-------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT-----LSSA-------FADSLSPSTSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE-----ecCC-------CcccccccCCEEEEEecCCEEEEEECCCCC
Confidence 11111 345788888999999999998765321 1111 12345667777777 578999999999998
Q ss_pred eeeeeecCCCCcCeeEEEECCCC---CEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 985 CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 985 ~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
.+..+.... ....+++++. ..+++++.||.|+.||..+|+.+-+..
T Consensus 152 ~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 152 LRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 876654221 2233444432 567778899999999999999877654
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.82 E-value=1.9e-06 Score=103.83 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=112.8
Q ss_pred EEEEEecCCCcEEEEEeCCCc-------------------EEEEEcccceEEEeecc--cc-------cCeeEEEEcCCC
Q 001248 863 TFLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL 914 (1114)
Q Consensus 863 ~~l~~sp~d~~~la~g~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~ 914 (1114)
..++++| +..++++++.++. |..+|..+|+.+..++. |. .+.....+..+|
T Consensus 233 ~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 233 DSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred cceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 3578888 6778888887764 99999999998877654 32 222222333466
Q ss_pred C---EEEEEeCCCcEEEEeCCCCcccccccccc---------CCCC-------C-C-----------CCCCceEEEEccC
Q 001248 915 N---VLVSSGADSQLCVWSSDGWEKQKNRFLQI---------PTGR-------T-P-----------TAQSDTRVQFHQD 963 (1114)
Q Consensus 915 ~---~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---------~~~~-------~-~-----------~~~~i~~v~fspd 963 (1114)
+ .++.++.+|.+.++|..+++......... ..+. . . ....-..++++|+
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~ 391 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG 391 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence 5 68899999999999999987642110000 0000 0 0 0000123788888
Q ss_pred CcEEEE-E------------------------------------eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCC
Q 001248 964 QIHFLV-V------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD 1006 (1114)
Q Consensus 964 g~~l~~-~------------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~d 1006 (1114)
...+.+ . .++.|..||..+++.+-.... ...+....+...
T Consensus 392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~ 468 (668)
T 1kv9_A 392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTA 468 (668)
T ss_dssp TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEET
T ss_pred CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeC
Confidence 776664 1 127799999999998766543 223333445557
Q ss_pred CCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 1007 SQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 1007 g~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.++++++.||.+++||..+|+.+.++.
T Consensus 469 gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 469 GNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCcccchhhhhhcChhheEec
Confidence 8899999999999999999999999887
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.78 E-value=2.8e-06 Score=99.67 Aligned_cols=166 Identities=13% Similarity=0.115 Sum_probs=104.7
Q ss_pred EEEEecCCCcEEEEEeCC----------------CcEEEEEcccceEEEeecccc----------cCeeEEEEc-CCC--
Q 001248 864 FLAFHPQDNNIIAIGMDD----------------SSIQIYNVRVDEVKSKLKGHS----------KRITGLAFS-HAL-- 914 (1114)
Q Consensus 864 ~l~~sp~d~~~la~g~~d----------------g~v~iwd~~~~~~~~~l~~h~----------~~V~~l~~s-~d~-- 914 (1114)
.+++.+ ...++..+..+ +.|.-+|..+|+.+..++... .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 456777 55667666655 389999999999887765421 1121 2222 467
Q ss_pred -CEEEEEeCCCcEEEEeCCCCcccccccccc----------CCCCC---------------------CCCCCceEEEEcc
Q 001248 915 -NVLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGRT---------------------PTAQSDTRVQFHQ 962 (1114)
Q Consensus 915 -~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------~~~~~---------------------~~~~~i~~v~fsp 962 (1114)
+.++.++.+|.+.++|..+++..-...... ..+.. .....-..++|+|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567889999999999999887643221110 00000 0000113467777
Q ss_pred CCcEEEEE----------------------------------------eCCeEEEEEcCCCceeeeeecCCCCcCeeEEE
Q 001248 963 DQIHFLVV----------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHAT 1002 (1114)
Q Consensus 963 dg~~l~~~----------------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~ 1002 (1114)
+..++++. ..+.|..||+.+++.+-..... .++..-.
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~ 479 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGT 479 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBC
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcc
Confidence 76665541 2367888999999887665422 1121111
Q ss_pred ECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 1003 FSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 1003 ~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+...+.+++.++.||.++.||..+|+.+-+++
T Consensus 480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 23367788889999999999999999998886
No 248
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.78 E-value=0.00093 Score=84.50 Aligned_cols=175 Identities=9% Similarity=0.022 Sum_probs=101.6
Q ss_pred cEEEEEcccceEEEeecc-cccCeeEEE---EcCC-CCEEEEEe----------CCCcEEEEeCCCCccccccccccCCC
Q 001248 883 SIQIYNVRVDEVKSKLKG-HSKRITGLA---FSHA-LNVLVSSG----------ADSQLCVWSSDGWEKQKNRFLQIPTG 947 (1114)
Q Consensus 883 ~v~iwd~~~~~~~~~l~~-h~~~V~~l~---~s~d-~~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~~~ 947 (1114)
.|++.|..+++.+..+.- ....+.+++ |..+ ..+|+.|+ ..|.|.+|++..++... ......
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~l-v~~~~v-- 884 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQT-VAEKEV-- 884 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEE-EEEEEE--
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEE-EEEEEc--
Confidence 466777777766544432 122344444 4333 46888876 24789999987432211 111111
Q ss_pred CCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE--cC
Q 001248 948 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS--AA 1025 (1114)
Q Consensus 948 ~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd--~~ 1025 (1114)
.+.+++++-- +| +|+++-..++++|++...+.++ .....+. .|..+.....+.++++|..-..|.++. ..
T Consensus 885 ----~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~ 956 (1158)
T 3ei3_A 885 ----KGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPM 956 (1158)
T ss_dssp ----SSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETT
T ss_pred ----CCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcC
Confidence 1356665533 34 6777778999999998765444 2111111 233333333577899998777777654 44
Q ss_pred CCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1026 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
.+++...-. .+.+ .+++++.|.. ...++.++.+|++++.+...
T Consensus 957 ~~~L~~~a~--D~~~-------~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 957 EGNFEEIAR--DFNP-------NWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTEEEEEEE--CCSC-------BCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred CCeEEEEEe--eccc-------ccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 444443222 1222 4455788774 35888899999999998865
No 249
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.73 E-value=6.7e-06 Score=96.72 Aligned_cols=196 Identities=9% Similarity=-0.089 Sum_probs=119.0
Q ss_pred EEEEeeCCCEEEEEe-C----------------CeEEEEEcCCCccccccCCC--C-------CCeEEEEEecCCC---c
Q 001248 823 CFALSKNDSYVMSAS-G----------------GKISLFNMMTFKTMATFMPP--P-------PAATFLAFHPQDN---N 873 (1114)
Q Consensus 823 ~v~~s~d~~~l~~~~-d----------------g~i~iwd~~~~~~~~~~~~~--~-------~~i~~l~~sp~d~---~ 873 (1114)
.+++.++...+..+. + +.|..+|..+++.+..++.. . ....-+.... +| +
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence 456666655655554 2 35899999999887665421 1 1112223334 56 4
Q ss_pred EEEEEeCCCcEEEEEcccceEEEeecccc-------------cCe--------------------------eEEEEcCCC
Q 001248 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHS-------------KRI--------------------------TGLAFSHAL 914 (1114)
Q Consensus 874 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~s~d~ 914 (1114)
+++.++.+|.++++|..+|+.+....-.. .+| ..++++|+.
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 67889999999999999998876653211 111 246788888
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCC
Q 001248 915 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 994 (1114)
Q Consensus 915 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h 994 (1114)
.+|+..+.+....++.....- ..+. .-.+....+..+|.+. ....++.|..||..+++.+-.+...
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~---------~~g~-~~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~-- 463 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPY---------RAGQ-FFVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEK-- 463 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCC---------CTTS-CCCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEES--
T ss_pred CEEEEEchhcccccccccccc---------ccCC-ccccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCC--
Confidence 888888777666655543210 0010 0000111222233321 0013578889999999887666532
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
..+.+..+...+.++++++.||.|+.||..+|+.+.++.
T Consensus 464 -~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 464 -FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp -SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred -CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 222222333356778889999999999999999998887
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.72 E-value=3.5e-06 Score=101.40 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=54.0
Q ss_pred CCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEE
Q 001248 881 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 960 (1114)
Q Consensus 881 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~f 960 (1114)
+|.|+.||+.+++.+.+...+ ..+....+...+.+++.++.|+.|+.||..+++...... ...+. ...-+.+
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~--~~~~~-----~~~p~~~ 508 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE--AQSGI-----VAAPMTF 508 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE--CSSCC-----CSCCEEE
T ss_pred cceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec--CCCCc-----ccCceEE
Confidence 488999999999988776643 334444455567899999999999999999877543221 11111 1134555
Q ss_pred ccCCcEEEE
Q 001248 961 HQDQIHFLV 969 (1114)
Q Consensus 961 spdg~~l~~ 969 (1114)
..+|+..++
T Consensus 509 ~~~G~~yva 517 (668)
T 1kv9_A 509 ELAGRQYVA 517 (668)
T ss_dssp EETTEEEEE
T ss_pred EECCEEEEE
Confidence 677875443
No 251
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.72 E-value=0.0021 Score=79.16 Aligned_cols=534 Identities=12% Similarity=0.069 Sum_probs=271.0
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
...|.++....+|. |-.|+.+ -+..||..+.+-.. + .......|.++.. .+| .|..
T Consensus 62 ~~~i~~i~~d~~g~--lWigT~~-Gl~~yd~~~~~f~~--------------~-----~~~~~~~i~~i~~-~~g-~lWi 117 (758)
T 3ott_A 62 NTRIYCGVIIDNTY--LYMGTDN-GILVYNYRADRYEQ--------------P-----ETDFPTDVRTMAL-QGD-TLWL 117 (758)
T ss_dssp SSCEEEEEEETTTE--EEEEETT-EEEEEETTTTEECC--------------C-----SCCCCSCEEEEEE-ETT-EEEE
T ss_pred CceEEEEEEcCCCc--EEEEeCC-CeEEEeCCCCEEEC--------------c-----ccCCCceEEEEEe-cCC-cEEE
Confidence 35688888888886 4455555 47899987653210 0 0111235777765 355 4555
Q ss_pred EeCCCeEEEEEccCCceeeeeEee-c-cccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeE-eecc----cc
Q 001248 438 AYSRHIVQIYSYHGGDEVRQHLEI-D-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGH----EA 510 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~~~~~~l-~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~h----~~ 510 (1114)
++.+ -+..+|..+++... .... . -....|.++....+|. +.+ |+.+ -|..+|..+++.... .... ..
T Consensus 118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL 191 (758)
T ss_dssp EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence 6666 48888987755322 1000 0 1134688888888887 333 3333 477888766553221 1111 12
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEE
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~ 590 (1114)
.|.++.. +.++..|..|+. +-+..+|..+..... +. . .....+..+..+.++. |.
T Consensus 192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~-------~-------------l~~~~i~~i~~d~~g~-lW 246 (758)
T 3ott_A 192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TE-------A-------------FHNNSIKSLALDGNGD-LL 246 (758)
T ss_dssp CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEE-EE-------E-------------EEEEEEEEEEECTTCC-EE
T ss_pred eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEe-cc-------C-------------CCCCeEEEEEEcCCCC-EE
Confidence 3777663 333344444553 457777765432111 10 0 0011344455555555 44
Q ss_pred EEeCCCeEEEEECCCcceEEEeccCC-----CCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCccceeeccccccccc
Q 001248 591 AAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS 665 (1114)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 665 (1114)
.|+. +-+.+++..+++......... ....|.++....+|.+.+ |+..| +.++.. +. ....+.
T Consensus 247 igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~-~~--~~~~~~------- 313 (758)
T 3ott_A 247 AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRY-NS--ALQFIP------- 313 (758)
T ss_dssp EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECC-CC---CEEEE-------
T ss_pred EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccccc-CC--ceeEEe-------
Confidence 4554 458888887665432221110 112466777777776554 44445 443321 11 111000
Q ss_pred cCCCCCCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCcccccccc
Q 001248 666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL 745 (1114)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~ 745 (1114)
... .
T Consensus 314 -----------------------------------------------------------------~~~-----------~ 317 (758)
T 3ott_A 314 -----------------------------------------------------------------ISQ-----------I 317 (758)
T ss_dssp -----------------------------------------------------------------HHH-----------H
T ss_pred -----------------------------------------------------------------ccc-----------C
Confidence 000 0
Q ss_pred CccccccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEE
Q 001248 746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825 (1114)
Q Consensus 746 ~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~ 825 (1114)
........|.++....+|...+. +.+|.. .++....... .++.+...... ..-....|.++.
T Consensus 318 ~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~-~~~~~~~~~~---------~~~~~~~~~~~-------~~l~~~~v~~i~ 379 (758)
T 3ott_A 318 TGTGDGNQFYSLFRDSKGFYWFG-GANGLI-RFTDPAGERH---------DAIWYRMGDKT-------YPLSHNRIRHIY 379 (758)
T ss_dssp SCSCCCCBEEEEEECTTCCEEEE-ETTEEE-EESCTTSSCC---------CCEEECTTCSS-------SCCSCSCEEEEE
T ss_pred CCCCCCceEEEEEEcCCCCEEEe-eCCcce-eecccccccc---------eeEEeccCCcC-------CCCCCCceEEEE
Confidence 00002235777777777775544 445533 3332211000 00001000000 000234588888
Q ss_pred EeeCCCEEEEEeCCeEEEEEcCCCcccccc--CC----CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc-----eE
Q 001248 826 LSKNDSYVMSASGGKISLFNMMTFKTMATF--MP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-----EV 894 (1114)
Q Consensus 826 ~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~-----~~ 894 (1114)
...+|++-+. .++.|..||..+++..... .. ....|.++...+ ++. |-+|+..+-|.++|..+. ..
T Consensus 380 ~d~~g~lWig-t~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~~~~~~~ 456 (758)
T 3ott_A 380 EDKEQQLWIA-TDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLMQSTSGQ 456 (758)
T ss_dssp ECTTSCEEEE-ETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEEHHHHHHCCSSE
T ss_pred ECCCCCEEEE-eCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEccccccccCCcc
Confidence 8888876554 3678999998776543211 11 124578887766 555 445776667888986641 11
Q ss_pred E---Eeec---c-cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEE
Q 001248 895 K---SKLK---G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967 (1114)
Q Consensus 895 ~---~~l~---~-h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l 967 (1114)
. ..+. + ....|.++...++|.+.+.++..+-|..+|..+++.... ..........+.++....+|.+.
T Consensus 457 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~-----~~~~~~~~~~~~~i~~d~~g~lW 531 (758)
T 3ott_A 457 YIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKL-----FADELTGEKSPNYLLCDEDGLLW 531 (758)
T ss_dssp EECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEE-----CTTTSCGGGCEEEEEECTTSCEE
T ss_pred eecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEe-----cCCCcCCCcccceEEECCCCCEE
Confidence 1 1111 1 123588999999998776444444588899876443211 11101111356778888888877
Q ss_pred EEEeCCeEEEEEcCCCceeeeeecCC-CCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCC
Q 001248 968 LVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1046 (1114)
Q Consensus 968 ~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
+.+ .+.+..|+..+++... +...+ ....|.++... +| .|..++..| +..||..+.+... +. ++..
T Consensus 532 igt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g-~lWi~t~~G-l~~~~~~~~~~~~-~~----~~~~---- 597 (758)
T 3ott_A 532 VGF-HGGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KN-SIWVSTTNG-LWIIDRKTMDARQ-QN----MTNK---- 597 (758)
T ss_dssp EEE-TTEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TT-EEEEEESSC-EEEEETTTCCEEE-C------CCC----
T ss_pred EEe-cCceEEEecCCCceEE-ecccCCCccceEEEEEC-CC-CEEEECCCC-eEEEcCCCceeEE-ec----CCCC----
Confidence 665 4568889887665432 11111 13568888763 55 455565555 7778988776542 11 2211
Q ss_pred CccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1047 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1047 ~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
... ...+...+| .|..|+.+|- ..++...
T Consensus 598 ~~~--~~~~~~~~G-~l~fG~~~Gl-~~f~p~~ 626 (758)
T 3ott_A 598 RFT--SLLFDPKED-CVYLGGADGF-GISHSNL 626 (758)
T ss_dssp CCS--EEEEETTTT-EEEEECBSEE-EEEEC--
T ss_pred cee--eeEEECCCC-cEEEecCCce-EEEChhh
Confidence 122 334443344 5677777774 5556554
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.72 E-value=8.4e-07 Score=91.37 Aligned_cols=206 Identities=11% Similarity=-0.009 Sum_probs=139.7
Q ss_pred CeEEEEEecCCCcEEEEEeC--CCcEEEEEcccceEEEeecccc-cCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcc
Q 001248 861 AATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEK 936 (1114)
Q Consensus 861 ~i~~l~~sp~d~~~la~g~~--dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l-~s~s~D~~v~iwd~~~~~~ 936 (1114)
....++|++ ++.++++.+. ++.|+++|+.+++.+..+.-.. .....+++. ++.| ++.-.++.+.++|..+.+.
T Consensus 22 f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 368899999 6765555443 5799999999999888764211 122345554 4455 4455678999999998655
Q ss_pred ccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCc---CeeEEEECCCCCEEEE
Q 001248 937 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHATFSCDSQLVYA 1012 (1114)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~---~v~~l~~s~dg~~l~s 1012 (1114)
...... + .+ ....+++||+.|+++ .++.|.++|..+.+.+..+....+.. .+..+.|. +|+..+.
T Consensus 99 ~~~i~~----g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn 167 (266)
T 2iwa_A 99 IKNFTH----Q-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWAN 167 (266)
T ss_dssp EEEEEC----C-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EEEEEC----C-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEe
Confidence 332211 1 11 224467788877775 56789999999999888877543322 35678887 7754444
Q ss_pred EEcCCeEEEEEcCCCeeeEEeCCCcccC----CCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1013 CFLDATVCVFSAANLKLRCRINPSAYLP----AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1013 ~s~Dg~I~vwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
...++.|.+.|..+++.+.++......+ .++ .....+..++|+|+...+++++...++|++.++.+.+
T Consensus 168 ~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 168 IWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp ETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred cCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 4457899999999999999987431110 010 1113445899999655677788889999999998765
No 253
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.71 E-value=9.2e-06 Score=85.83 Aligned_cols=202 Identities=10% Similarity=-0.024 Sum_probs=133.1
Q ss_pred CccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
.+..+++++++..|..+. ++.|..++..+......+.........++++++++.++++-...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999877777666 689999999765443333333356889999994455666666678999999875332222
Q ss_pred ecccccCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eC
Q 001248 898 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 972 (1114)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d 972 (1114)
..........++++|++..|..+.. .+.|..++++..... .+... . ......+++++++..|.++ ..
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~---~~~~~-~----~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR---ILAQD-N----LGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE---EEECT-T----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE---EEEEC-C----CCCCcEEEEcCCCCEEEEEECCC
Confidence 2222245689999997666655553 367888888753221 11111 1 1245899999988777664 56
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeC
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.|.++|..+........ . ......+++ ++..|+.+. ..+.|.++|..+++.+..+.
T Consensus 189 ~~I~~~~~~g~~~~~~~~--~-~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 189 HRAECLNPAQPGRRKVLE--G-LQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TEEEEEETTEEEEEEEEE--C-CCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CEEEEEecCCCceEEEec--C-CCCceEEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 789999997654333322 1 234566765 456666555 45899999999999998876
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.69 E-value=1.2e-06 Score=90.12 Aligned_cols=200 Identities=10% Similarity=0.050 Sum_probs=137.6
Q ss_pred CccEEEEeeCCCEEEEEe---CCeEEEEEcCCCccccccCCCCC-CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 820 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
....++|++|+...++.+ ++.|+++|+.+++.+..+..... ....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 356899999876555543 47899999999998887653222 23355555 3456666667899999999999998
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCe
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 974 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~ 974 (1114)
.++..-... ...+++||+.|+.+..+++|.++|..+.+.......... +.. ...+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p--~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHR--VIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Ccc--cccceeEEEE-CCEEEEecCCCCe
Confidence 888532121 244556888777777789999999988665433222211 100 0134677888 77555444 5789
Q ss_pred EEEEEcCCCceeeeeecCC---------C--CcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCC
Q 001248 975 LAIFETTKLECVKQWVPRE---------S--SAPITHATFSCDSQLVYACF-LDATVCVFSAANL 1027 (1114)
Q Consensus 975 i~iwd~~~~~~~~~~~~~~---------h--~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~ 1027 (1114)
|.+.|..+++.+..+...+ + ......|+|+|+++.|++++ ..+.+++.++...
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999999988886531 0 13568999999998765554 6788888887654
No 255
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.60 E-value=5e-05 Score=89.36 Aligned_cols=168 Identities=17% Similarity=0.153 Sum_probs=105.3
Q ss_pred EEEEEecCCCcEEEEEeC--------------------C----CcEEEEEcccceEEEeecc--ccc----CeeE-EEEc
Q 001248 863 TFLAFHPQDNNIIAIGMD--------------------D----SSIQIYNVRVDEVKSKLKG--HSK----RITG-LAFS 911 (1114)
Q Consensus 863 ~~l~~sp~d~~~la~g~~--------------------d----g~v~iwd~~~~~~~~~l~~--h~~----~V~~-l~~s 911 (1114)
..++++| +..++.++.. | +.|.-+|..+|+.+..++. |.. .+.. +.+.
T Consensus 249 ~~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~ 327 (582)
T 1flg_A 249 QSASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFD 327 (582)
T ss_dssp SCCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEE
T ss_pred CCceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEe
Confidence 3567888 5556665553 2 6899999999998877643 321 1111 2222
Q ss_pred ---CCCC---EEEEEeCCCcEEEEeCCCCcccccccccc----------CCC-------CCC--------C---------
Q 001248 912 ---HALN---VLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTG-------RTP--------T--------- 951 (1114)
Q Consensus 912 ---~d~~---~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------~~~-------~~~--------~--------- 951 (1114)
.+|+ .++.++.+|.+.++|..+++..-...... ..+ ..+ .
T Consensus 328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~ 407 (582)
T 1flg_A 328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP 407 (582)
T ss_dssp EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred eecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence 4674 78889999999999998877543211110 000 000 0
Q ss_pred ---CCCceEEEEccCCcEEEE-E---------------------------------eCCeEEEEEcCCCceeeeeecCCC
Q 001248 952 ---AQSDTRVQFHQDQIHFLV-V---------------------------------HETQLAIFETTKLECVKQWVPRES 994 (1114)
Q Consensus 952 ---~~~i~~v~fspdg~~l~~-~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~h 994 (1114)
...-..++++|+..++++ . .++.|..||+.+++.+-......
T Consensus 408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~- 486 (582)
T 1flg_A 408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL- 486 (582)
T ss_dssp TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-
T ss_pred CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-
Confidence 000124577776655544 2 14779999999999876654321
Q ss_pred CcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 995 ~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
++..-.+...+.++++++.||.++.||..+|+.+-+++
T Consensus 487 --~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 487 --PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp --CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred --CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 22221222356788889999999999999999999887
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.59 E-value=1.9e-05 Score=92.86 Aligned_cols=83 Identities=10% Similarity=0.067 Sum_probs=53.4
Q ss_pred CCCcEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEE
Q 001248 880 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959 (1114)
Q Consensus 880 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 959 (1114)
.+|.|+.||+.+++.+.++... ..+.+..+...+..++.++.|+.|+.||..+++..-... ...+. .-..+.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~--~~~~~-----~~~p~~ 513 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK--MPSGG-----IGSPMT 513 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE--CSSCC-----CSCCEE
T ss_pred CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe--CCCCc-----EeeeEE
Confidence 3588999999999988776532 233333333356678889999999999999987643221 11111 112345
Q ss_pred EccCCcEEEEE
Q 001248 960 FHQDQIHFLVV 970 (1114)
Q Consensus 960 fspdg~~l~~~ 970 (1114)
+..+|+.++..
T Consensus 514 ~~~~G~~yv~~ 524 (571)
T 2ad6_A 514 YSFKGKQYIGS 524 (571)
T ss_dssp EEETTEEEEEE
T ss_pred EEECCEEEEEE
Confidence 66888876663
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.55 E-value=3.7e-06 Score=85.20 Aligned_cols=184 Identities=10% Similarity=0.090 Sum_probs=125.9
Q ss_pred ccEEEEeeCCCEEEEEe-CC--eEEEEEcCCCccccccCCCCCCeEE--EEEecCCCcEEEEEeCCCcEEEEEcccceEE
Q 001248 821 VPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK 895 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~--l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~ 895 (1114)
...+.|+ ++.+..+.+ +| .|+++|+.+++.+..+.... .... +++. ++++.+..-.++.+.+||..+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence 3678888 666555555 55 89999999999988876433 3333 4443 4555565667899999999999999
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCe
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ 974 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~ 974 (1114)
.++.... ....+++|++.|+.+..+++|.++|..+.+......... .+.. ...+..+.|. +|+..+.. .+..
T Consensus 121 ~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~--~~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 121 RSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEE--LPELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCcc--ccccceeEEE-CCEEEEEEccCCe
Confidence 8887532 223334577777777667889999999866544322211 1111 0133456776 77655554 6789
Q ss_pred EEEEEcCCCceeeeeecCCC----------CcCeeEEEECCCCCEEEEEEc
Q 001248 975 LAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFL 1015 (1114)
Q Consensus 975 i~iwd~~~~~~~~~~~~~~h----------~~~v~~l~~s~dg~~l~s~s~ 1015 (1114)
|.+.|.++++.+..+...+- ..-...|||+|+++.|++++.
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999999888765311 235688999999998887764
No 258
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.54 E-value=1.9e-06 Score=97.86 Aligned_cols=235 Identities=8% Similarity=-0.007 Sum_probs=142.2
Q ss_pred CCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEE-c-CCCCeEEEEeC-----
Q 001248 368 PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-S-PDGSLFGVAYS----- 440 (1114)
Q Consensus 368 pdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~-s-pdg~~las~~~----- 440 (1114)
+||+++.++...++.|.+.|+.+.+......+ ........+++ + |+++++.+++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i------------------p~g~~phg~~~~~~p~~~~v~~~~~~~~p~ 160 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEI------------------PNAKGIHGLRPQKWPRSNYVFCNGEDETPL 160 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC------------------SSCCSEEEEEECCSSBCSEEEEEECSCEES
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeC------------------CCCCCCcceeeeecCCCcEEEEeccccccc
Confidence 49998777766678899999999887652111 11235788998 5 99999988852
Q ss_pred -------------CCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC-------------------
Q 001248 441 -------------RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD------------------- 488 (1114)
Q Consensus 441 -------------dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d------------------- 488 (1114)
++.+.+.|..+.+...++. ..+ .-..++++|||++ +++++...
T Consensus 161 ~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~-Vgg---~pd~~~~spdGk~-~~vt~~~se~~~~i~~~~~~~~d~v~V 235 (595)
T 1fwx_A 161 VNDGTNMEDVANYVNVFTAVDADKWEVAWQVL-VSG---NLDNCDADYEGKW-AFSTSYNSEKGMTLPEMTAAEMDHIVV 235 (595)
T ss_dssp SCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE-ESS---CCCCEEECSSSSE-EEEEESCTTCCSSHHHHTCCSEEEEEE
T ss_pred CCCCcccccccccCceEEEEECCCCeEEEEEE-eCC---CccceEECCCCCE-EEEEecCcccCcchhhccccccceEEE
Confidence 3579999999987666442 222 3467889999995 34444322
Q ss_pred ------------------CCEEEEeCCC--Ccc-eeEeeccccCEEEEeeccCCCceEEEEEe-cCCeEEEEEcCCCCCe
Q 001248 489 ------------------KTIKVWDATN--GAK-QYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSR 546 (1114)
Q Consensus 489 ------------------~~i~iwd~~~--~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~ 546 (1114)
+.|.|.|..+ ++. +..+..- ....++.+ ++||++++.++ .+.+|.++|+.+....
T Consensus 236 ~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~--sPDGk~v~V~~~~s~~VsVid~~~~~~~ 312 (595)
T 1fwx_A 236 FNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNM--APDKKHLCVAGKLSPTVTVLDVTRFDAV 312 (595)
T ss_dssp EEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEE--CTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred eeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEE--cCCCCEEEEeCCCCCeEEEEECcccccc
Confidence 2366666666 444 3444321 23334454 56677666655 5889999999854211
Q ss_pred eeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCC----------cceEEEeccCC
Q 001248 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----------VQLLTSIDADG 616 (1114)
Q Consensus 547 ~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~ 616 (1114)
. ... +.+.......-.......-++|+++|...++...|++|.+||+.+ .+.+.++..+.
T Consensus 313 ~--~~~--------l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y 382 (595)
T 1fwx_A 313 F--YEN--------ADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY 382 (595)
T ss_dssp H--HSC--------CCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS
T ss_pred c--ccc--------cCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc
Confidence 0 000 000000000001111333455566663455566899999999877 56777777653
Q ss_pred C---CCCcCeEEEcCCCCEEEEEeC
Q 001248 617 G---LPASPRIRFNKDGCLLAVSTN 638 (1114)
Q Consensus 617 ~---~~~v~~~~~s~d~~~l~~~~~ 638 (1114)
+ ......+.++|||++|+++..
T Consensus 383 qpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 383 QPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp CEEEEEETTTTSTTCCSSEEEEEES
T ss_pred ccccceeccceEeCCCCCEEEEcCC
Confidence 2 111234567899999998754
No 259
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.54 E-value=0.0078 Score=76.15 Aligned_cols=175 Identities=9% Similarity=0.062 Sum_probs=105.2
Q ss_pred CeEEEEEcCCCccccccCCCC-CCeEEEE---EecCCCcEEEEEe----------CCCcEEEEEcccceEEEee-ccccc
Q 001248 839 GKISLFNMMTFKTMATFMPPP-PAATFLA---FHPQDNNIIAIGM----------DDSSIQIYNVRVDEVKSKL-KGHSK 903 (1114)
Q Consensus 839 g~i~iwd~~~~~~~~~~~~~~-~~i~~l~---~sp~d~~~la~g~----------~dg~v~iwd~~~~~~~~~l-~~h~~ 903 (1114)
+.|++.|..+++.+..+.-.. ..+.+++ |..+...+|++|+ ..|.|++|++..+++.... ....+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 568899988888766554332 2344544 4332357898887 4589999999755432221 22467
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe-CCeEEE--EEc
Q 001248 904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-ETQLAI--FET 980 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~-d~~i~i--wd~ 980 (1114)
+|++++-- +|++||.. ..+|++|++...+.....+ ... ..+..+.....|.++++|+ -..+.+ |+.
T Consensus 887 ~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~-----~~~---~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 887 AVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTEC-----NHY---NNIMALYLKTKGDFILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp CEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEE-----EEC---CCSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred cCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEe-----ecc---ccEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence 89988754 35444443 4689999998643222111 011 1233444444577777763 334444 554
Q ss_pred CCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 981 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
...+. ..+..+.+..+++++.|-.++ .++.+..+|.+.+...+.
T Consensus 956 ~~~~L-~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 956 MEGNF-EEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp TTTEE-EEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred CCCeE-EEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 43333 233334557789999987555 666788999999998754
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.53 E-value=1.1e-05 Score=87.83 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=146.1
Q ss_pred CccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccC--C------------------CCCCeEEEEEecCCCcEEEEE
Q 001248 820 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM--P------------------PPPAATFLAFHPQDNNIIAIG 878 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~--~------------------~~~~i~~l~~sp~d~~~la~g 878 (1114)
...+++++++++++.++. ++.|..|+..++... .+. . ....+..+++.++++++++ +
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-V 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-E
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-E
Confidence 456788999998666666 789999998764432 111 0 0135788999973455444 5
Q ss_pred eCCCcEEEEEcccceEEEeec----c-cccCeeEEEEcC-CCCEEEEEeC-----------------CCcEEEEeCCCCc
Q 001248 879 MDDSSIQIYNVRVDEVKSKLK----G-HSKRITGLAFSH-ALNVLVSSGA-----------------DSQLCVWSSDGWE 935 (1114)
Q Consensus 879 ~~dg~v~iwd~~~~~~~~~l~----~-h~~~V~~l~~s~-d~~~l~s~s~-----------------D~~v~iwd~~~~~ 935 (1114)
...+.|..+|..+++. ..+. + .....+.+++.+ +|++.++-.. ++.|..||..+++
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 4455588888776542 2221 1 123468899999 9987776533 3668888876644
Q ss_pred cccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCc--eeeeeecCCCCcCeeEEEECCCCCEEE
Q 001248 936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE--CVKQWVPRESSAPITHATFSCDSQLVY 1011 (1114)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1011 (1114)
... ..... .....++++|||++|.++ ..+.|.+|++.+.. ....+.. ..+ ...+++.++|.+.+
T Consensus 177 ~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 177 TTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEE
T ss_pred EEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEE
Confidence 211 11111 134789999999977664 56789999987532 1112211 123 78899999998766
Q ss_pred EEEc----------CCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1012 ACFL----------DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1012 s~s~----------Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+... .+.|..+|. .++.+..+. .+.+... ..+..+++. ++++.++....+.|.++++....
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~----~~~g~~~--~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP----LPPPFAG--EHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE----CCTTTTT--SCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred EecCcccccccCCCccEEEEECC-CCCEEEEEE----CCCCCcc--ccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 6544 467888886 477777665 2222111 122355553 45666666678899999886544
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.53 E-value=2.8e-06 Score=86.07 Aligned_cols=206 Identities=11% Similarity=0.101 Sum_probs=132.3
Q ss_pred ccccCCCCCC--eEEEEEecCCCcEEEEEeCCC--cEEEEEcccceEEEeecccccCeeEEEEcCCCCEEEEEe-CCCcE
Q 001248 852 MATFMPPPPA--ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQL 926 (1114)
Q Consensus 852 ~~~~~~~~~~--i~~l~~sp~d~~~la~g~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~D~~v 926 (1114)
+.++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+.-. .........+++..|.... .++.+
T Consensus 34 v~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 34 VHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence 34443 4433 4788898 467777777766 9999999999988887643 3343433333455555544 58899
Q ss_pred EEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCcC---eeEEE
Q 001248 927 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP---ITHAT 1002 (1114)
Q Consensus 927 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~---v~~l~ 1002 (1114)
.+||.++.+........ + ....+++|++.|+.+ .++.|.++|..+.+.+..+.......+ +..+.
T Consensus 110 ~v~D~~t~~~~~ti~~~---~--------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYD---G--------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EEEETTTCCEEEEEECS---S--------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred EEEECccCcEEEEEECC---C--------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 99999986654322221 1 224455778877774 467899999999999888776433333 44577
Q ss_pred ECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCC--CCCCCccceEEEecCCCCCeEEEEeCCCcEE
Q 001248 1003 FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG--VSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1073 (1114)
Q Consensus 1003 ~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~ 1073 (1114)
|. +|+..+..-.+..|.+.|..+|+.+..+......+.. .....-.+-.++|+|+...+++||-.=-.++
T Consensus 179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ 250 (262)
T 3nol_A 179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVF 250 (262)
T ss_dssp EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceE
Confidence 76 7765554446889999999999999998854332211 0011122348999996555555553333333
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.52 E-value=4.1e-06 Score=84.72 Aligned_cols=182 Identities=9% Similarity=0.058 Sum_probs=124.9
Q ss_pred ccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEE--EEEecCCCcEEEEEeCCCcEEEEEcccceEEEe
Q 001248 821 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~--l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~ 897 (1114)
...+.|+ ++.+.++.+ +|.|+++|+.+++.+..+ -...... +++. ++++.+..-.++.+.+||..+.+.+.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 3577776 344444444 789999999999998877 2233333 5553 456666666789999999999999998
Q ss_pred ecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEE
Q 001248 898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA 976 (1114)
Q Consensus 898 l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~ 976 (1114)
+..- ..=.+++ +|++.|+.+..+++|.++|.++.+............. ...+..+.|. +|+..+.. .+..|.
T Consensus 132 i~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~---v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 132 TRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP---VELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp EECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE---CCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred EeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc---cccccccEEe-CCEEEEEECCCCeEE
Confidence 8753 2224455 5788888877899999999998765443322221110 1234566766 77655554 577999
Q ss_pred EEEcCCCceeeeeecCC-----------CCcCeeEEEECCCCCEEEEEE
Q 001248 977 IFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 977 iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~s~s 1014 (1114)
+.|.++++.+..+...+ -..-...||++|+++.|++.+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999988876431 124678899999888776665
No 263
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.50 E-value=9.2e-05 Score=78.01 Aligned_cols=223 Identities=12% Similarity=0.043 Sum_probs=136.4
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
..+.+++|++++.+|+++-..++.|.+++..++.... +....-.....++++|++..|..+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-------------------~~~~~~~~p~~ia~d~~~~~lyv~ 96 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-------------------IIRQDLGSPEGIALDHLGRTIFWT 96 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-------------------EECTTCCCEEEEEEETTTTEEEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-------------------EEECCCCCccEEEEEecCCeEEEE
Confidence 3578999999888777777778899999997654321 111122467899999976666555
Q ss_pred -eCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecC--CCCEEEEeCCCCcceeEee-ccccCEEE
Q 001248 439 -YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFE-GHEAPVYS 514 (1114)
Q Consensus 439 -~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~-~h~~~v~~ 514 (1114)
...+.|.+++.+.... .. ...........++++|++..++ ++... .+.|..+++. +.....+. ........
T Consensus 97 d~~~~~I~~~~~~g~~~-~~--~~~~~~~~P~~i~vd~~~g~ly-v~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~g 171 (267)
T 1npe_A 97 DSQLDRIEVAKMDGTQR-RV--LFDTGLVNPRGIVTDPVRGNLY-WTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNG 171 (267)
T ss_dssp ETTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEETTTTEEE-EEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEE
T ss_pred ECCCCEEEEEEcCCCCE-EE--EEECCCCCccEEEEeeCCCEEE-EEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcE
Confidence 4567899999875432 21 1111224578999999777533 33332 4678888865 43333332 23345677
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEE-e
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-G 593 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 593 (1114)
+++++.. +.+.++....+.|..+|............ .. ....++.. +..++.+ .
T Consensus 172 ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~---------------------~P~gi~~d--~~~lyva~~ 226 (267)
T 1npe_A 172 LTFDAFS-SQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQ---------------------YPFAVTSY--GKNLYYTDW 226 (267)
T ss_dssp EEEETTT-TEEEEEETTTTEEEEEETTEEEEEEEEEC-CC---------------------SEEEEEEE--TTEEEEEET
T ss_pred EEEcCCC-CEEEEEECCCCEEEEEecCCCceEEEecC-CC---------------------CceEEEEe--CCEEEEEEC
Confidence 8875532 24555556678899998864221111110 01 11122332 2344444 4
Q ss_pred CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCC
Q 001248 594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 631 (1114)
Q Consensus 594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 631 (1114)
..+.|.++|..+++.+..+..... .....+++.|++.
T Consensus 227 ~~~~v~~~d~~~g~~~~~i~~g~~-~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 KTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEECSCC
T ss_pred CCCeEEEEeCCCCCceEEEccccc-cccceeeecCccC
Confidence 678999999999998888864321 2357788888764
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.50 E-value=2.3e-06 Score=86.65 Aligned_cols=192 Identities=15% Similarity=0.082 Sum_probs=128.9
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCeeE--EEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 001248 862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG--LAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 939 (1114)
Q Consensus 862 i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~--l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~ 939 (1114)
...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ -...... +++.. +++.+..-.++.+.+||.++.+....
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence 4788887 4788888889999999999999988777 2233433 55543 24444555788999999998665433
Q ss_pred cccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCcC---eeEEEECCCCCEEEEEEc
Q 001248 940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP---ITHATFSCDSQLVYACFL 1015 (1114)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~---v~~l~~s~dg~~l~s~s~ 1015 (1114)
... . + ....+++|++.|+++ .++.|.++|..+.+.++.+....+..+ +..+.|. +|+..+..-.
T Consensus 132 i~~--~-~--------eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~ 199 (268)
T 3nok_A 132 TRY--S-G--------EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH 199 (268)
T ss_dssp EEC--S-S--------CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EeC--C-C--------ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC
Confidence 222 1 1 123444778888775 578999999999999988876444333 4566776 7754444446
Q ss_pred CCeEEEEEcCCCeeeEEeCCCcccCCC---CCCCCccceEEEecCCCCCeEEEEeCCC
Q 001248 1016 DATVCVFSAANLKLRCRINPSAYLPAG---VSSSNVHPLVIAAHPQEPNEFALGLSDG 1070 (1114)
Q Consensus 1016 Dg~I~vwd~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~d~~~l~s~~~Dg 1070 (1114)
+..|.+.|..+|+.+..+......+.. .....-.+-.|+|+|+..++++||-.=-
T Consensus 200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp 257 (268)
T 3nok_A 200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP 257 (268)
T ss_dssp CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence 789999999999999998854221100 0011122348999997666777774333
No 265
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.49 E-value=2e-05 Score=92.45 Aligned_cols=250 Identities=12% Similarity=0.102 Sum_probs=150.5
Q ss_pred EEEeeCCCE----EEEEe-CCeEEEEEcCCCccccccCCCC----CCeEE-EEEecCCCcEEEEEe------CCCcEEEE
Q 001248 824 FALSKNDSY----VMSAS-GGKISLFNMMTFKTMATFMPPP----PAATF-LAFHPQDNNIIAIGM------DDSSIQIY 887 (1114)
Q Consensus 824 v~~s~d~~~----l~~~~-dg~i~iwd~~~~~~~~~~~~~~----~~i~~-l~~sp~d~~~la~g~------~dg~v~iw 887 (1114)
++++|.+.. |++++ |+.|.-+|..+|+.+....... ..+++ ..+. ++. +++++ .+|.|+-+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CCE-EEEEecccccCCCCeEEEE
Confidence 455443333 66666 8999999999999876644222 01221 1222 444 44454 38999999
Q ss_pred EcccceEEEeecccccC-------------------------------------e-eEEEEcCCCCEEEEEeCC------
Q 001248 888 NVRVDEVKSKLKGHSKR-------------------------------------I-TGLAFSHALNVLVSSGAD------ 923 (1114)
Q Consensus 888 d~~~~~~~~~l~~h~~~-------------------------------------V-~~l~~s~d~~~l~s~s~D------ 923 (1114)
|..+|+.+..+...... + ..+++.++..+++.++.+
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 99999988766432110 1 134566677777777665
Q ss_pred ----------CcEEEEeCCCCccccccccccCCCC--CCCCCCceEEEEc-cCC---cEEEE-EeCCeEEEEEcCCCcee
Q 001248 924 ----------SQLCVWSSDGWEKQKNRFLQIPTGR--TPTAQSDTRVQFH-QDQ---IHFLV-VHETQLAIFETTKLECV 986 (1114)
Q Consensus 924 ----------~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~v~fs-pdg---~~l~~-~~d~~i~iwd~~~~~~~ 986 (1114)
+.|.-+|.++++..- ......... ........-+... .+| ..++. ..+|.+.++|..+|+.+
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W-~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKF-GYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEE-EEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCCccccceEEEEeCCCCceee-EeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 378999999876532 211111000 0000011122222 567 44554 48899999999999987
Q ss_pred eeeecCC-----------CCcC--------------------------eeEEEECCCCCEEEEEE---------------
Q 001248 987 KQWVPRE-----------SSAP--------------------------ITHATFSCDSQLVYACF--------------- 1014 (1114)
Q Consensus 987 ~~~~~~~-----------h~~~--------------------------v~~l~~s~dg~~l~s~s--------------- 1014 (1114)
....... ...+ -..++++|+..++++..
T Consensus 347 w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~ 426 (599)
T 1w6s_A 347 SANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYK 426 (599)
T ss_dssp EEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred ecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccccc
Confidence 6654221 0111 12467778777665532
Q ss_pred ------------------------cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCC
Q 001248 1015 ------------------------LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1070 (1114)
Q Consensus 1015 ------------------------~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg 1070 (1114)
.+|.|.-||+.+|+.+-+.... .+ . . -.+ ++. .+.+++.++.||
T Consensus 427 ~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~-~--~--~g~--~~t---agg~vf~gt~dg 494 (599)
T 1w6s_A 427 AGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FA-V--W--GGT--MAT---AGDLVFYGTLDG 494 (599)
T ss_dssp TTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SC-C--C--SBC--EEE---TTTEEEEECTTS
T ss_pred CCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CC-c--c--Ccc--eEe---cCCEEEEECCCC
Confidence 3478999999999988776411 11 0 0 011 211 367888899999
Q ss_pred cEEEEeccCCCCcccCCCC
Q 001248 1071 GVHVFEPLESEGKWGVPPP 1089 (1114)
Q Consensus 1071 ~v~vW~i~~~~~~~~~~~~ 1089 (1114)
.|+.||..+|+..|+..-|
T Consensus 495 ~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 495 YLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EEEEEETTTCCEEEEEECS
T ss_pred eEEEEECCCCCEEEEeeCC
Confidence 9999999999988877543
No 266
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.45 E-value=0.00018 Score=84.59 Aligned_cols=213 Identities=11% Similarity=-0.035 Sum_probs=120.0
Q ss_pred CCeEEEEeCCCeEEEEEccCCceeeeeEeeccccCC------eeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGG------VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 432 g~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~------V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
+..+.+++.++.|.-+|..+|+.+-....-...... -..++. .+. .++.++.|+.|..+|..+|+.+...
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~--~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGD--KVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETT--EEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECC--EEEEEeCCCEEEEEECCCCCEEeee
Confidence 334445555344888999999876533211110000 012222 234 4667778999999999999998776
Q ss_pred ecccc----CEE-EEeeccC-CCce-EEEEEec------CCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEee-
Q 001248 506 EGHEA----PVY-SVCPHHK-ENIQ-FIFSTAL------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG- 571 (1114)
Q Consensus 506 ~~h~~----~v~-~~~~~~~-~~~~-~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~- 571 (1114)
..... .+. +..+... .+++ .++.++. ++.|..+|..+++.+.........+ .|++...+..
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~-----~p~~~~~~~~~ 218 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHM-----GRLNGKDSTVT 218 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCE-----EEETTEEEEES
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccc-----ccccCcccccc
Confidence 53221 111 0011111 1222 5666543 7899999999988777554321111 1111110000
Q ss_pred ------------------------ecccceeEEEecCCCCEEEEEeC--------------------C----CeEEEEEC
Q 001248 572 ------------------------FRKRSLGVVQFDTTKNRFLAAGD--------------------D----FSIKFWDM 603 (1114)
Q Consensus 572 ------------------------~~~~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~ 603 (1114)
.....-...+++++.+.++.+.. | +.|..+|.
T Consensus 219 g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~ 298 (582)
T 1flg_A 219 GDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP 298 (582)
T ss_dssp SCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT
T ss_pred cccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC
Confidence 00011123567777777777663 2 68999999
Q ss_pred CCcceEEEeccCCCC----CCcCe-EEEc---CCCC---EEEEEeCCCcEEEEEccCCccc
Q 001248 604 DSVQLLTSIDADGGL----PASPR-IRFN---KDGC---LLAVSTNDNGIKILATSDGIRL 653 (1114)
Q Consensus 604 ~~~~~~~~~~~~~~~----~~v~~-~~~s---~d~~---~l~~~~~dg~i~iwd~~~~~~~ 653 (1114)
.+|+.+..+....+. ..+.. +.+. .+|+ .++.++.+|.++++|..+++..
T Consensus 299 ~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 299 SSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp TTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEe
Confidence 999999888643221 01111 2222 4674 7888999999999999999443
No 267
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.40 E-value=4.1e-05 Score=93.78 Aligned_cols=159 Identities=12% Similarity=0.088 Sum_probs=94.6
Q ss_pred CceEEEEc-CCCCeEEEEEecCC----cEEEEEcCCc-ceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCC
Q 001248 360 SPMSMDFH-PVQQTLLLVGTNVG----DIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS 433 (1114)
Q Consensus 360 ~v~~v~~s-pdg~~ll~tg~~dg----~v~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 433 (1114)
.+...+|| |||++|+++.+.+| +|+++|+.++ +.+.. .+. .....++|||||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------~~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------KVS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------CEE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------ccc---CceeeEEEecCCC
Confidence 57889999 99998665655444 4999999988 63210 011 1235689999999
Q ss_pred eEEEEeCC-----CeEEEEEccCCceeeeeEeec-cccCCeeEEEecCCCCeeEEEEec-CCCCEEEEeCCCCc-ce--e
Q 001248 434 LFGVAYSR-----HIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGA-KQ--Y 503 (1114)
Q Consensus 434 ~las~~~d-----g~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~-~~--~ 503 (1114)
.|+....| ..|.++++.++..... ..+. .+......+.|||||+.+++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 98887665 3588888877642211 1222 223346788999999974333332 23458889988763 22 3
Q ss_pred Ee-eccccCEEEEeeccCCCceEEEEEecC----CeEEEEEcCC
Q 001248 504 IF-EGHEAPVYSVCPHHKENIQFIFSTALD----GKIKAWLYDN 542 (1114)
Q Consensus 504 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d----~~i~~wd~~~ 542 (1114)
.+ .+......++.|+. ++.+++....+ ..|..+|+.+
T Consensus 313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 33 33344555554322 22344444433 2566666653
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.39 E-value=5.6e-05 Score=81.51 Aligned_cols=231 Identities=10% Similarity=0.036 Sum_probs=138.1
Q ss_pred CCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCC--cEEEEEcccceEE
Q 001248 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK 895 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg--~v~iwd~~~~~~~ 895 (1114)
.....++++++++++++.. ++.|..||..+. ....+. .......+++++ +++++++..... .|..+|..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4567899999998766664 789999998653 332222 235688999999 787666554332 4777777777643
Q ss_pred Eeec-ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc---cccc--cCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 896 SKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN---RFLQ--IPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 896 ~~l~-~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~---~~~~--~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
.... ........++..+++..+++-..++.|.++|..++..... ..+. ...+.. .....+ ++|+++|.+
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEE
Confidence 2221 1122335566666665566555688888888765321100 0000 000111 123445 899987777
Q ss_pred E--eCCeEEEEEcCC-Cce--eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCC
Q 001248 970 V--HETQLAIFETTK-LEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS 1044 (1114)
Q Consensus 970 ~--~d~~i~iwd~~~-~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~ 1044 (1114)
+ ..+.|..|++.. ++. ...+.. ......++++++|++.++....+.|.++|.. |+........ .+
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--~~---- 253 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--QG---- 253 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--GT----
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--cc----
Confidence 4 567899999875 322 112211 1356779999999877766667899999975 6653221100 11
Q ss_pred CCCccceEEEec---CCCCCeEEEEeCCC
Q 001248 1045 SSNVHPLVIAAH---PQEPNEFALGLSDG 1070 (1114)
Q Consensus 1045 ~~~v~~~~~~~~---~~d~~~l~s~~~Dg 1070 (1114)
...+.+++|. | |++.|++++..+
T Consensus 254 --~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 254 --VIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp --CTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred --cCCceEEEEecccC-CCCEEEEECCCC
Confidence 1335689998 5 566666665443
No 269
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.39 E-value=0.00014 Score=78.48 Aligned_cols=242 Identities=13% Similarity=0.069 Sum_probs=140.8
Q ss_pred CcceeEeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEE
Q 001248 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI 427 (1114)
Q Consensus 348 ~~~~~~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~ 427 (1114)
+.++...+........++|+++|+ |+++-..++.|..||..++.... +. ....+..++
T Consensus 21 ~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~~~~------~~---------------~~~~p~gia 78 (306)
T 2p4o_A 21 PAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQIH------AT---------------VEGKVSGLA 78 (306)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEEE------EE---------------CSSEEEEEE
T ss_pred CceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCceEEE------Ee---------------CCCCceeEE
Confidence 445556665557788999999998 67777678999999987542211 11 123688999
Q ss_pred EcCCCCeEEEEeCC-C-eEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcc-eeE
Q 001248 428 WSPDGSLFGVAYSR-H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYI 504 (1114)
Q Consensus 428 ~spdg~~las~~~d-g-~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~ 504 (1114)
++++|+++++.... + .|..+|..+++.. ....+. .......++..+++. .+++...++.|.++|..+++. +..
T Consensus 79 ~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~~ 154 (306)
T 2p4o_A 79 FTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWL 154 (306)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEEE
Confidence 99999976665433 2 4666777777633 222221 122334556555554 556666688899999765421 111
Q ss_pred ee---------ccccCEEEEeeccCCCce-EEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecc
Q 001248 505 FE---------GHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574 (1114)
Q Consensus 505 ~~---------~h~~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~ 574 (1114)
.. +.-.....+ ++ ++. +.++-...+.|..+++....... ...+.. .+
T Consensus 155 ~~~~~~~~~~~~~~~~pngi--s~--dg~~lyv~d~~~~~I~~~~~~~~g~~~-----~~~~~~-~~------------- 211 (306)
T 2p4o_A 155 EHPMLARSNSESVFPAANGL--KR--FGNFLYVSNTEKMLLLRIPVDSTDKPG-----EPEIFV-EQ------------- 211 (306)
T ss_dssp ECGGGSCSSTTCCSCSEEEE--EE--ETTEEEEEETTTTEEEEEEBCTTSCBC-----CCEEEE-ES-------------
T ss_pred ECCccccccccCCCCcCCCc--Cc--CCCEEEEEeCCCCEEEEEEeCCCCCCC-----ccEEEe-cc-------------
Confidence 11 111223444 23 333 45555667889999987421110 000000 00
Q ss_pred cceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEc---CCCCEEEEEeCC
Q 001248 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTND 639 (1114)
Q Consensus 575 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~d~~~l~~~~~d 639 (1114)
....-++++++|+++++....+.|.+++.. ++...............+++|. ++++.|++.+..
T Consensus 212 ~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 212 TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 012235677777777776678899999975 6553322212122357889998 888877776654
No 270
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.37 E-value=0.00011 Score=80.08 Aligned_cols=257 Identities=11% Similarity=0.107 Sum_probs=141.5
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeee--eccCCCCcccccccccCCCCCeeEEEEcC-CCCeE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV--WDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF 435 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 435 (1114)
....+++|.++|+ ++.++..++.|..||..+++.... .... +....+...... ........+..+++.+ +|+ |
T Consensus 19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~~~~~~p~gi~~~~~~g~-l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDF-AYASPYWNKAFCENSTDA-EKRPLCGRTYDISYNLQNNQ-L 94 (322)
T ss_dssp SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEE-EESCTTCCHHHHTTCCCG-GGHHHHCCEEEEEEETTTTE-E
T ss_pred CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEE-ecccccccccccccccch-hccccCCCCceEEEcCCCCc-E
Confidence 4567899999998 477888899999999886543221 0000 000000000000 0000113578999998 565 4
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEe-ecc-ccCCeeEEEecC-CCCeeEEEEecC-----------------CCCEEEEe
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLE-IDA-HVGGVNDIAFSH-PNKQLCVITCGD-----------------DKTIKVWD 495 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~-l~~-h~~~V~~v~~s~-d~~~~~l~s~~~-----------------d~~i~iwd 495 (1114)
.++...+.|..+|..++. +..... ..+ .......+++.+ +|. +.++... ++.|..||
T Consensus 95 ~v~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEEEe
Confidence 445444558888877553 221111 111 123478899999 887 4454322 36788899
Q ss_pred CCCCcceeEeeccccCEEEEeeccCCCceEEE-EEecCCeEEEEEcCCCCC--eeeecCCCCeeEEEEEecCCCeEEeee
Q 001248 496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGF 572 (1114)
Q Consensus 496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~~ 572 (1114)
..+++...... .......++++ ++++.|+ +-...+.|..|++..... ...+....
T Consensus 172 ~~~~~~~~~~~-~~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~------------------- 229 (322)
T 2fp8_A 172 PSTKETTLLLK-ELHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP------------------- 229 (322)
T ss_dssp TTTTEEEEEEE-EESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS-------------------
T ss_pred CCCCEEEEecc-CCccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC-------------------
Confidence 77665433222 12334556764 4555554 445678999999875211 00000000
Q ss_pred cccceeEEEecCCCCEEEEEeC----------CCeEEEEECCCcceEEEeccCCC--CCCcCeEEEcCCCCEEEEEeCCC
Q 001248 573 RKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDN 640 (1114)
Q Consensus 573 ~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~dg 640 (1114)
. ..-++++++|++.++... .+.|..+|. .++.+..+..... ...+.++++ .+++++++....+
T Consensus 230 --g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~ 304 (322)
T 2fp8_A 230 --N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHG 304 (322)
T ss_dssp --S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCS
T ss_pred --C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCC
Confidence 1 223556666665555443 467888886 4677766654432 234666766 4666666666778
Q ss_pred cEEEEEccC
Q 001248 641 GIKILATSD 649 (1114)
Q Consensus 641 ~i~iwd~~~ 649 (1114)
.|..+++..
T Consensus 305 ~i~~~~~~~ 313 (322)
T 2fp8_A 305 SVGILVYDK 313 (322)
T ss_dssp EEEEEEC--
T ss_pred ceEEEeccc
Confidence 898888754
No 271
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.36 E-value=3.7e-05 Score=77.30 Aligned_cols=187 Identities=9% Similarity=0.086 Sum_probs=125.2
Q ss_pred CCccEEEEeeCCCEEEEEe-C--CeEEEEEcCCCccccccCCCCCC-eEEEEEecCCCcEEEEEeCCCcEEEEEcccceE
Q 001248 819 EAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 894 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~ 894 (1114)
.-...+.|+. +.+..+.+ + +.|+.+|+.+++.+..+...... -..+++. ++++......++.+.+||..+.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence 3455788876 44444444 3 48999999999998877543321 1334443 456666677899999999999999
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCC
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET 973 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~ 973 (1114)
+.++..... =.+++ +|++.|+.+..++.|.++|..+.+......+.. .+.. ...+..+.+. +|+..+.. .+.
T Consensus 98 ~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~--~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 98 RARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRP--LDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp EEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTTT
T ss_pred EEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcc--cccceeeEEe-CCEEEEEECCCC
Confidence 998875332 23454 567777766778899999999866543322221 1110 0133455554 66655554 677
Q ss_pred eEEEEEcCCCceeeeeecCC-----------CCcCeeEEEECCCCCEEEEEEc
Q 001248 974 QLAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACFL 1015 (1114)
Q Consensus 974 ~i~iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~s~s~ 1015 (1114)
.|.+.|.++++.+..+...+ -..-...||++|+++.|++.+.
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999999988876431 1235688999999888777663
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.35 E-value=2.9e-05 Score=95.13 Aligned_cols=195 Identities=12% Similarity=0.056 Sum_probs=110.8
Q ss_pred CccEEEEe-eCCCEEEEEe--CC----eEEEEEcCCC-ccccc-cCCCCCCeEEEEEecCCCcEEEEEeCC-----CcEE
Q 001248 820 AVPCFALS-KNDSYVMSAS--GG----KISLFNMMTF-KTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQ 885 (1114)
Q Consensus 820 ~v~~v~~s-~d~~~l~~~~--dg----~i~iwd~~~~-~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~d-----g~v~ 885 (1114)
.+...+|| |||++||.+. +| +|+++|+.++ +.+.. +. .....++|+| |++.|+....| ..|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence 56788999 9999999765 22 4999999988 63211 11 1234688999 77777666654 3688
Q ss_pred EEEcccceE--EEeec-ccccCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEE
Q 001248 886 IYNVRVDEV--KSKLK-GHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959 (1114)
Q Consensus 886 iwd~~~~~~--~~~l~-~h~~~V~~l~~s~d~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 959 (1114)
++++.+++. ...+. .+.....++.|||||++|+..+. ...|.++|+.++.... .......+.. .....+.
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~---~~~~s~~ 326 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREK---GVRYDVQ 326 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCT---TCCEEEE
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCC---CceEEEe
Confidence 888877531 12222 22344678899999999886653 3457888887742111 0011111111 2334444
Q ss_pred EccCCcEEEE-EeC-----CeEEEEEcCCCceeee-eecCCCCcCeeEEEECCCCCEEEEEEcCCe--EEEEEc
Q 001248 960 FHQDQIHFLV-VHE-----TQLAIFETTKLECVKQ-WVPRESSAPITHATFSCDSQLVYACFLDAT--VCVFSA 1024 (1114)
Q Consensus 960 fspdg~~l~~-~~d-----~~i~iwd~~~~~~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~--I~vwd~ 1024 (1114)
|+. |..|+. +.. ..|..+++.+...... +........+..+.+. ++.++++...|+. |+++++
T Consensus 327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 443 555444 432 2577778765322222 2221212245556654 3344566777776 555564
No 273
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.30 E-value=4.9e-05 Score=76.37 Aligned_cols=201 Identities=11% Similarity=0.087 Sum_probs=128.3
Q ss_pred CeEEEEEecCCCcEEEEEeCCC--cEEEEEcccceEEEeecccccCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccc
Q 001248 861 AATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQ 937 (1114)
Q Consensus 861 ~i~~l~~sp~d~~~la~g~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l-~s~s~D~~v~iwd~~~~~~~ 937 (1114)
-...+.|++ +.++.+.+.+| .|+.+|+.+++.+..+.-... ........++..| +..-.++.+.+||..+.+..
T Consensus 22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 22 FTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 366899985 56777766654 899999999998887754322 3223222234444 44557889999999986654
Q ss_pred cccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecCCCCc---CeeEEEECCCCCEEEEE
Q 001248 938 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 938 ~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~---~v~~l~~s~dg~~l~s~ 1013 (1114)
...... + ....+++|+..|+++ .++.|.++|..+.+.++.+....+.. .+..+.+. +|+..+..
T Consensus 99 ~ti~~~---~--------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 99 ARFRYP---G--------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp EEEECS---S--------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EEEeCC---C--------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 322211 1 223445677777664 57789999999999988887644433 34455654 66655444
Q ss_pred EcCCeEEEEEcCCCeeeEEeCCCcccCCCCC---CCCccceEEEecCCCCCeEEEEeCCCcEEEEe
Q 001248 1014 FLDATVCVFSAANLKLRCRINPSAYLPAGVS---SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1076 (1114)
Q Consensus 1014 s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1076 (1114)
-.+..|.+.|..+|+.+..+......+.... ...-.+-.|+++|+.+++++||-.=-.++--.
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~ 232 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIR 232 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEE
Confidence 4678999999999999999885543322100 11122348999996556666664434443333
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.26 E-value=0.00024 Score=72.68 Aligned_cols=218 Identities=11% Similarity=0.101 Sum_probs=133.6
Q ss_pred ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee--cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001248 854 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSS 931 (1114)
Q Consensus 854 ~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l--~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~ 931 (1114)
.+.+-...+..++++|+++.++++...++.|...|.. ++.+..+ .+. ...-+|++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 3445556799999999556777788899999999998 8877766 332 45778999999887777667788999988
Q ss_pred CCCcccc-ccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCC---Cceeeee-----ecCCCCcCeeEE
Q 001248 932 DGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQW-----VPRESSAPITHA 1001 (1114)
Q Consensus 932 ~~~~~~~-~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~---~~~~~~~-----~~~~h~~~v~~l 1001 (1114)
....... .......-+..+.......++|+|+++.|.++ ......+|.... ...+... ....+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 7644211 11111111111223467899999999777764 333344444431 1111111 111234567899
Q ss_pred EECCCCCEE-EEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEec
Q 001248 1002 TFSCDSQLV-YACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1077 (1114)
Q Consensus 1002 ~~s~dg~~l-~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i 1077 (1114)
++.|....| +.....+.+.++|.. |+.+..+....... +-......+-.|+|.+ +|+ |...++-+-++++.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~-~l~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSR-GLSHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGG-GCSSCCCSEEEEEECT-TCC-EEEEETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccC-CcccccCCCCeeEECC-CCC-EEEEcCCceEEEEEe
Confidence 999966654 555566789999965 55666655221110 0001113455899999 576 555577776665543
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.24 E-value=0.00056 Score=69.90 Aligned_cols=164 Identities=10% Similarity=0.076 Sum_probs=107.0
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
-.+.+..++|+|++..|.++...++.|...|.. ++.+.... +.+. .....|++.+++.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g~-~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDFV-KDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSSC-SSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCCC-CChHHeEEeCCCEEEE
Confidence 446799999999988778878889999999998 77665322 2222 3577889999998877
Q ss_pred EEeCCCeEEEEEccCCceee--eeEee----ccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC---CCcceeEee-
Q 001248 437 VAYSRHIVQIYSYHGGDEVR--QHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFE- 506 (1114)
Q Consensus 437 s~~~dg~i~iwd~~~~~~~~--~~~~l----~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~- 506 (1114)
+.-.++.+.++++.....+. ....+ ...+.....++|+|+++.+ +++.......+|.+. .+..+..+.
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L--~va~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTF--WFFKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEE--EEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEE--EEEECcCCceEEEEcccccCCceeeecc
Confidence 76567889999887654322 11111 1234567899999999853 333333334444433 111222221
Q ss_pred ------ccccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC
Q 001248 507 ------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1114)
Q Consensus 507 ------~h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 542 (1114)
.+...+.++++++.. +.+++....++.+..+|...
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC
T ss_pred hhhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC
Confidence 123456788887754 46777777788888888763
No 276
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.23 E-value=0.0013 Score=71.24 Aligned_cols=234 Identities=9% Similarity=0.017 Sum_probs=132.2
Q ss_pred CCCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccC---CCCCCeEEEEEecCCCcEEEEEeCCCcEEE-EEc-ccc
Q 001248 818 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQI-YNV-RVD 892 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~la~g~~dg~v~i-wd~-~~~ 892 (1114)
...+.++.+++ +..++++..+.|.. ....++.-.... .+...+..+.+.+ ++.+++++. +|.|+. .|- .+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~g~v~~S~DgG~tW 154 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMITN-VGAIYRTKDSGKNW 154 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEET-TCCEEEESSTTSSE
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEeC-CccEEEEcCCCCCC
Confidence 44678888875 55566665775544 222233322221 2334577888877 677776654 565432 221 122
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeC
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE 972 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d 972 (1114)
+.+. .++...+.++++.+++.+++.+...+..+-+|-. ++ .+..+.... ...+..+++.+++..++++.+
T Consensus 155 ~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~--tW~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~ 224 (327)
T 2xbg_A 155 QALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QT--AWEPHNRTT-----SRRLHNMGFTPDGRLWMIVNG 224 (327)
T ss_dssp EEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CS--SCEEEECCS-----SSCEEEEEECTTSCEEEEETT
T ss_pred EEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CC--ceeECCCCC-----CCccceeEECCCCCEEEEeCC
Confidence 3222 3455678999999998888766544333333321 11 111221111 135788999999998888888
Q ss_pred CeEEEEEcCCCceeeeeecC--CCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccc
Q 001248 973 TQLAIFETTKLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1050 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1050 (1114)
+.+.+.+...++.-...... .+...+.++++.+++..++++ .+|.| .+..+.|+.-..+......+. .++
T Consensus 225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~~- 296 (327)
T 2xbg_A 225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NFY- 296 (327)
T ss_dssp TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CCC-
T ss_pred ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----CeE-
Confidence 88777643334332222211 123468899999988877765 47777 455666655544331101111 144
Q ss_pred eEEEecCCCCCeEEEEeCCCcEEEEe
Q 001248 1051 LVIAAHPQEPNEFALGLSDGGVHVFE 1076 (1114)
Q Consensus 1051 ~~~~~~~~d~~~l~s~~~Dg~v~vW~ 1076 (1114)
.+.|.+ +..+++++.+|.|.-++
T Consensus 297 -~v~~~~--~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 297 -KILFFS--PDQGFILGQKGILLRYV 319 (327)
T ss_dssp -EEEEEE--TTEEEEECSTTEEEEEC
T ss_pred -EEEEEC--CCceEEEcCCceEEEEc
Confidence 677764 35677778899876665
No 277
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.20 E-value=0.00047 Score=74.41 Aligned_cols=207 Identities=6% Similarity=-0.013 Sum_probs=130.0
Q ss_pred CCCccEEEEeeCCCEEEEEe--CCeEEEEEcCC---Ccccc-ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMT---FKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~---~~~~~-~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
...+..++|++++..|..+. ++.|..+++.+ +.... .+...-.....+++++.++++.++-..++.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34577899998777777665 68999999876 12222 22222245678999874566666666788999999875
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
......+........++++.|++..|..+... +.|...+++...... ... .. ......+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~~~-~~-----~~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT-EN-----IQWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EEC-SS-----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--EEE-CC-----CCCceEEEEeccCCEEEE
Confidence 43332333334567899999877766655543 678888887532211 111 11 124589999998777766
Q ss_pred E--eCCeEEEEEcCCCceeeeeec-CCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 970 V--HETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 970 ~--~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+ ..+.|..+|..... .+.+.. .........|++. .+.++++-...+.|..++..+|+.+..+.
T Consensus 181 ~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 4 56789999987433 333321 1223456788884 34444555567889999988887666554
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.19 E-value=0.00076 Score=73.86 Aligned_cols=238 Identities=12% Similarity=0.057 Sum_probs=147.8
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
..+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++..+.....+.
T Consensus 35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp SSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 345555555 345666666678888887654433333 334588999998556666666677899999988765333333
Q ss_pred ccccCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eC-CeE
Q 001248 900 GHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQL 975 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d-~~i 975 (1114)
.......++++.+.+..| ++-...+.|.+.+++...... .. ..+ ......+++.|.+..|..+ .. +.|
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l~--~~~----l~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LL--WQS----LEKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EE--CTT----CSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--EE--eCC----CCCcceEEEecCcCeEEEeccCCCCEE
Confidence 333456789998755554 555567889999988643211 11 111 1245899999976666653 34 678
Q ss_pred EEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEE
Q 001248 976 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1054 (1114)
Q Consensus 976 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1054 (1114)
..+++..... ..+.. ..-.....|+++|++..|+.+. ..+.|..+|++.......+... .-.|..++
T Consensus 185 ~r~~~dG~~~-~~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~gia 252 (349)
T 3v64_C 185 EASSMDGSGR-RIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAIT 252 (349)
T ss_dssp EEEETTSCSC-EESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------CSSEEEEE
T ss_pred EEEeCCCCCc-EEEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC----------CCCceEEE
Confidence 8888764332 22221 2244678999999888776665 4578999998754333222211 12344666
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1055 AHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1055 ~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+. ++.+.++-...+.|...+..+|+
T Consensus 253 v~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 253 VF--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EE--CCEEEEecCCCCeEEEEEccCCC
Confidence 63 35566666667888888866666
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.19 E-value=0.00052 Score=76.41 Aligned_cols=236 Identities=12% Similarity=0.054 Sum_probs=147.7
Q ss_pred cEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeeccc
Q 001248 822 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 901 (1114)
Q Consensus 822 ~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h 901 (1114)
.|.+..+ ..+|+.+....|+.+++.......... ....+..++|++.++.++.+-...+.|+.+++..+.....+...
T Consensus 80 ~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 80 SCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp CEEECSS-CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred eECCccc-cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 3444444 445666666778989987655443333 34458899999856666666667789999998876543333333
Q ss_pred ccCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eC-CeEEE
Q 001248 902 SKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQLAI 977 (1114)
Q Consensus 902 ~~~V~~l~~s~d~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d-~~i~i 977 (1114)
.....++++.+.+..| ++-...+.|.+.+++...... .+ ..+ ......+++.|++..|..+ .. +.|..
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~--l~--~~~----l~~P~giavdp~~g~ly~td~~~~~~I~r 229 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LL--WQS----LEKPRAIALHPMEGTIYWTDWGNTPRIEA 229 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE--EE--CSS----CSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE--ee--cCC----CCCCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence 3456789998765554 555556788888887633211 11 111 1245899999977766664 33 67888
Q ss_pred EEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEec
Q 001248 978 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1056 (1114)
Q Consensus 978 wd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1056 (1114)
++....... .+.. ..-.....|+|+|++..|+.+. ..+.|..+|++.......+... .-.|..+++.
T Consensus 230 ~~~dG~~~~-~~~~-~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~----------~~~P~giav~ 297 (386)
T 3v65_B 230 SSMDGSGRR-IIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAITVF 297 (386)
T ss_dssp EETTSCSCE-EEEC-SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS----------CSSEEEEEEE
T ss_pred EeCCCCCcE-EEEE-CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC----------CCCceEEEEE
Confidence 887654332 2221 2244678999998888776665 4578999998754333222211 1234467664
Q ss_pred CCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1057 PQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1057 ~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
++.+.++-...+.|..++..+|+
T Consensus 298 --~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 298 --EDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp --TTEEEEEETTTTEEEEEETTTCC
T ss_pred --CCEEEEeeCCCCeEEEEECCCCc
Confidence 35566666677888888866666
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.16 E-value=0.00033 Score=79.10 Aligned_cols=249 Identities=8% Similarity=0.013 Sum_probs=144.2
Q ss_pred CccEEEEeeC--CCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC---C-cEEEEEcccc
Q 001248 820 AVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVD 892 (1114)
Q Consensus 820 ~v~~v~~s~d--~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d---g-~v~iwd~~~~ 892 (1114)
....++++++ +..|.++. .+.|+.+|..++..... .........++|++ +++++++.... . .+..++...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4678999984 44455554 58899999977665433 33455689999999 77755544321 1 2333333322
Q ss_pred eE-EEeecccccCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 893 EV-KSKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 893 ~~-~~~l~~h~~~V~~l~~s~-d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
.. ...+. .......+++.| +|.++++-..++.|+.++..++..... ...... . .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~--~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDT--K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCC--C---CCcccEEEeCCCCEEEEE
Confidence 11 01111 233456789999 677666666778899999876543111 111111 1 123579999999966664
Q ss_pred --eCCeEEEEEcC--CCce--eeeeec----CC---------CCcCeeEEEE---------CCCCCEEEEEEcCCeEEEE
Q 001248 971 --HETQLAIFETT--KLEC--VKQWVP----RE---------SSAPITHATF---------SCDSQLVYACFLDATVCVF 1022 (1114)
Q Consensus 971 --~d~~i~iwd~~--~~~~--~~~~~~----~~---------h~~~v~~l~~---------s~dg~~l~s~s~Dg~I~vw 1022 (1114)
..+.|..++.. ++.. ...+.. .+ .-.....+++ .++|.+.++-...++|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 56789887765 2321 111111 01 1124677999 7777766666667899999
Q ss_pred EcCCCeeeEEeCCCc----ccCCC---CCCCCccceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1023 SAANLKLRCRINPSA----YLPAG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1023 d~~~~~~~~~~~~~~----~~~~~---~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
+. +|.......... -...| ....--.|..++++|.++.++++=...+.|+.++++
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 84 665543332111 00011 011123477899996566666666667788887764
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=0.0004 Score=78.45 Aligned_cols=247 Identities=9% Similarity=0.033 Sum_probs=141.6
Q ss_pred CccEEEEee-CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeC-CC----cEEEEEcccc
Q 001248 820 AVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS----SIQIYNVRVD 892 (1114)
Q Consensus 820 ~v~~v~~s~-d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~-dg----~v~iwd~~~~ 892 (1114)
....++++| ++..|.++. .+.|+.+|+.++.... +.........++|++ ++++|.++.. ++ .+.+++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 467899997 455566665 5889999987755433 333455688999999 7775554443 22 34444433 3
Q ss_pred eEE--EeecccccCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 893 EVK--SKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 893 ~~~--~~l~~h~~~V~~l~~s~-d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
... ..+. ......+++++| +|.++++-..++.|..++.+++.... ....... .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 221 2222 123457889999 67777776678889999998644311 1111111 23578999999996666
Q ss_pred E--eCCeEEEEEcCC--Cce--eeeeecC----CC---------CcCee-EEEEC--------CCCCEEEEEEcCCeEEE
Q 001248 970 V--HETQLAIFETTK--LEC--VKQWVPR----ES---------SAPIT-HATFS--------CDSQLVYACFLDATVCV 1021 (1114)
Q Consensus 970 ~--~d~~i~iwd~~~--~~~--~~~~~~~----~h---------~~~v~-~l~~s--------~dg~~l~s~s~Dg~I~v 1021 (1114)
+ ..+.|..++... +.. +..+... +. -.... .+++. ++|.+.++-...++|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 567898887653 221 1111110 10 11233 45553 34555555555678999
Q ss_pred EEcCCCeeeEEeCCCc--ccC--CC---CCCCCccceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1022 FSAANLKLRCRINPSA--YLP--AG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1022 wd~~~~~~~~~~~~~~--~~~--~~---~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
++ .+|+......... +.. .| ....--.|..++++|+++.++++-...+.|+.++++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 5666544332100 000 11 001113577899998545566655566778877764
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.13 E-value=0.00063 Score=74.48 Aligned_cols=205 Identities=11% Similarity=0.009 Sum_probs=132.2
Q ss_pred CCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
..+..++|++.+..|.... .+.|..+++........+.........+++.+.+++++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3478899998777777665 68899999876554333333334567899997566666766677899999987543333
Q ss_pred eecccccCeeEEEEcCCCCEEEEEe-CC-CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eC
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSG-AD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 972 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s-~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d 972 (1114)
.+........++++.|.+..|..+. .. +.|...+++...... ... .+ ......++++|++..|..+ ..
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~--~~----~~~PnGla~d~~~~~lY~aD~~~ 224 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IAD--TH----LFWPNGLTIDYAGRRMYWVDAKH 224 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--SCC--SS----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE--EEE--CC----CCCcceEEEeCCCCEEEEEECCC
Confidence 3333445678999998666655444 44 678888887632211 111 11 1245899999977777664 56
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.|..+|...... +.+.. ........|++ .++...++-...+.|..++..+|+.+..+.
T Consensus 225 ~~I~~~~~dG~~~-~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 225 HVIERANLDGSHR-KAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TEEEEEETTSCSC-EEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEeCCCCce-EEEEe-CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 7899999875433 33221 22456778888 344444555566889888877777666554
No 283
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.08 E-value=0.0002 Score=86.39 Aligned_cols=237 Identities=10% Similarity=-0.027 Sum_probs=129.1
Q ss_pred CccEEEEeeCCCEEEEEe--CCeEEEEEcCCCccccccCCCCC-CeEEEEEecCCCcEEEEEe-CC-----CcEEEEEcc
Q 001248 820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGM-DD-----SSIQIYNVR 890 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~la~g~-~d-----g~v~iwd~~ 890 (1114)
...++++..+++.+++|+ ++.+.+||..+.+-...-..+.. .-.++++.+ ++++++.|+ .+ ..+.+||..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCC
Confidence 344578889999999998 46899999886543322111111 223455566 789999998 44 479999998
Q ss_pred cceEEEee----cccccCeeEEEEcCCCCEEEEEeCCC---------cEEEEeCCCCccccccccccCCCC---CCCCCC
Q 001248 891 VDEVKSKL----KGHSKRITGLAFSHALNVLVSSGADS---------QLCVWSSDGWEKQKNRFLQIPTGR---TPTAQS 954 (1114)
Q Consensus 891 ~~~~~~~l----~~h~~~V~~l~~s~d~~~l~s~s~D~---------~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~ 954 (1114)
+++-...- ......-...++..++..++.++.|+ .+..||..+..-.. ........ ......
T Consensus 323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~~~ 400 (656)
T 1k3i_A 323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDAMC 400 (656)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCCBT
T ss_pred CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCCCC
Confidence 76522210 00000000112334556666665554 46778877643211 11111000 000012
Q ss_pred ceEEEEcc-CCcEEEEEe-CC-----------eEEEEEcCCCceeeeeecCCC-CcCeeEEEECCCCCEEEEEEcC----
Q 001248 955 DTRVQFHQ-DQIHFLVVH-ET-----------QLAIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLD---- 1016 (1114)
Q Consensus 955 i~~v~fsp-dg~~l~~~~-d~-----------~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~s~D---- 1016 (1114)
-.++.|.. +++++++++ ++ .+.+||..+...........+ ...-.+++..|||++++.|+.+
T Consensus 401 ~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~ 480 (656)
T 1k3i_A 401 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP 480 (656)
T ss_dssp CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT
T ss_pred CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC
Confidence 24555544 677777743 21 678888877665433200111 2223455678899999999865
Q ss_pred -------CeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeC
Q 001248 1017 -------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1068 (1114)
Q Consensus 1017 -------g~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~ 1068 (1114)
..+.+||..+.+-.. +. .++.....+ -.+...| |+++++.|+.
T Consensus 481 ~~~~~~~~~v~~ydp~t~~W~~-~~---~~~~~R~~h----s~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 481 FEDSTPVFTPEIYVPEQDTFYK-QN---PNSIVRVYH----SISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp TCCCSBCCCCEEEEGGGTEEEE-CC---CCSSCCCTT----EEEEECT-TSCEEEEECC
T ss_pred cCCCCcccceEEEcCCCCceee-cC---CCCCccccc----cHhhcCC-CcEEEecCCC
Confidence 468999998876443 21 112111011 1233456 6899999885
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.08 E-value=0.0025 Score=71.18 Aligned_cols=230 Identities=10% Similarity=0.082 Sum_probs=144.5
Q ss_pred CEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc----eEEEeecccccCee
Q 001248 831 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----EVKSKLKGHSKRIT 906 (1114)
Q Consensus 831 ~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~----~~~~~l~~h~~~V~ 906 (1114)
.+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++... .....+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 36666667889999988665444333 44578999999855556665566788999988752 22233333445678
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe---CCeEEEEEcCC
Q 001248 907 GLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---ETQLAIFETTK 982 (1114)
Q Consensus 907 ~l~~s~d~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~---d~~i~iwd~~~ 982 (1114)
+|++.+.+ ++.++-...+.|.+.+++...... .+. ... .....+++.|.+.+|..+. .+.|...++..
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~--l~~-~~~-----~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFR-ENG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEE--EEE-CSS-----CCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEE--EEe-CCC-----CCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 89998744 444555567889999988643211 111 111 2458999999776666643 36788888865
Q ss_pred CceeeeeecCCCCcCeeEEEECCCCCEEEEEEc-CCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC
Q 001248 983 LECVKQWVPRESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1061 (1114)
Q Consensus 983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~-Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~ 1061 (1114)
.... .+.. ..-.....|++++++..|+.+.. .+.|..+|++.......+.....+ -.|..++.. ++.
T Consensus 235 ~~~~-~~~~-~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l--------~~P~gl~v~--~~~ 302 (400)
T 3p5b_L 235 VDIY-SLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL--------AHPFSLAVF--EDK 302 (400)
T ss_dssp CSCE-EEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTT--------SSEEEEEEE--TTE
T ss_pred CccE-EEEE-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCC--------CCCEEEEEe--CCE
Confidence 4332 2221 22357899999998888877654 578999998754433222211111 234466664 345
Q ss_pred eEEEEeCCCcEEEEeccCCC
Q 001248 1062 EFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1062 ~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
++++-...+.|..++..+|+
T Consensus 303 lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 303 VFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEEESSSCSEEEEESSSCC
T ss_pred EEEecCCCCeEEEEEcCCCC
Confidence 66666677889999977776
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.06 E-value=0.0073 Score=65.33 Aligned_cols=194 Identities=12% Similarity=0.048 Sum_probs=113.1
Q ss_pred CCccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccc-cCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc--ccceEE
Q 001248 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV--RVDEVK 895 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~--~~~~~~ 895 (1114)
..+..+.+.+++..++++.+|.|..- ...++.-.. .......+..+++.+ ++.+++++...+..+-+|- .+.+.+
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW~~~ 199 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAWEPH 199 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSSCEEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCceeEC
Confidence 34667888788887777766654221 122322211 223455789999999 7888877654433333442 334443
Q ss_pred EeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeE
Q 001248 896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQL 975 (1114)
Q Consensus 896 ~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i 975 (1114)
. ......+..+++.++++.++ ++.+|.+++++.+.++. +..+... .......+..+++.+++..++++.++.+
T Consensus 200 ~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t--W~~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g~i 272 (327)
T 2xbg_A 200 N--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN--WGELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAGAL 272 (327)
T ss_dssp E--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE--ECCCBCT--TSSCCSCEEEEEESSSSCEEEEESTTCE
T ss_pred C--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe--eEeccCC--cccCCcceEEEEecCCCEEEEEeCCCeE
Confidence 2 23456788999999987664 45678777765332221 1111111 0000124688999999998888888877
Q ss_pred EEEEcCCCceeeeeec-CCCCcCeeEEEECCCCCEEEEEEcCCeEEEEE
Q 001248 976 AIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1114)
Q Consensus 976 ~iwd~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd 1023 (1114)
.+....++.-..+.. ......+.++.|.++++ +++++.+|.|.-++
T Consensus 273 -~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 273 -LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp -EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred -EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 344444543332221 12245678899876555 55566789877665
No 286
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.05 E-value=0.0058 Score=65.76 Aligned_cols=225 Identities=11% Similarity=0.031 Sum_probs=125.5
Q ss_pred CCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE-eCCCeEEEEEccCC---cee
Q 001248 380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHGG---DEV 455 (1114)
Q Consensus 380 dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~dg~i~iwd~~~~---~~~ 455 (1114)
...|+..|+.+++.... +. ....+..++|++++..|..+ ..++.|..+++.+. ...
T Consensus 9 ~~~I~~i~~~~~~~~~~-------------------~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~ 68 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSL-------------------IP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 68 (316)
T ss_dssp BSSEEEEETTSCCCEEE-------------------EC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred CCeEEEEECCCcceEeh-------------------hc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc
Confidence 46789999887654321 11 23367899999976655555 45688999998761 222
Q ss_pred eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEEEeeccCCCceEEEEEecC-Ce
Q 001248 456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GK 534 (1114)
Q Consensus 456 ~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~ 534 (1114)
.. .+...-.....+++.+.++. +.++-...+.|.+.|+........+.........+++.+. ++.++++.... +.
T Consensus 69 ~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~ 144 (316)
T 1ijq_A 69 DT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAK 144 (316)
T ss_dssp EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCE
T ss_pred EE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCe
Confidence 21 12222245688999876665 4556566789999997644332233333456677876543 23444444333 67
Q ss_pred EEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEec
Q 001248 535 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 535 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 613 (1114)
|...+++.................++ +++++..|+.+. ..+.|..+|+..........
T Consensus 145 I~~~~~dG~~~~~~~~~~~~~P~gla---------------------~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~ 203 (316)
T 1ijq_A 145 IKKGGLNGVDIYSLVTENIQWPNGIT---------------------LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 203 (316)
T ss_dssp EEEEETTSCCEEEEECSSCSCEEEEE---------------------EETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred EEEEcCCCCCeEEEEECCCCCceEEE---------------------EeccCCEEEEEECCCCeEEEEecCCCceEEEee
Confidence 77777653222111111222334444 444433454444 56789999986433222222
Q ss_pred cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 614 ~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
..........+++. .+.++++-...+.|..++..++
T Consensus 204 ~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 204 DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp CTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred cCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 21122234577775 3556666666788988887776
No 287
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.04 E-value=0.00038 Score=83.95 Aligned_cols=249 Identities=12% Similarity=0.013 Sum_probs=138.4
Q ss_pred EEEEee-CCCEEEEEe-CC-----------eEEEEEcCCCcccc--ccCC-CCCCeEEEEEecCCCcEEEEEe-CCCcEE
Q 001248 823 CFALSK-NDSYVMSAS-GG-----------KISLFNMMTFKTMA--TFMP-PPPAATFLAFHPQDNNIIAIGM-DDSSIQ 885 (1114)
Q Consensus 823 ~v~~s~-d~~~l~~~~-dg-----------~i~iwd~~~~~~~~--~~~~-~~~~i~~l~~sp~d~~~la~g~-~dg~v~ 885 (1114)
++++.+ +++.++.|+ ++ .+.+||..+++... .+.. +.....++++.. +++++++|+ .+..++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence 567777 888888876 21 58899998765432 2221 223344577777 899999998 455899
Q ss_pred EEEcccceEEEeecccccCe-eEEEEcCCCCEEEEEe-CC-----CcEEEEeCCCCccccccc---cccCCCCCC----C
Q 001248 886 IYNVRVDEVKSKLKGHSKRI-TGLAFSHALNVLVSSG-AD-----SQLCVWSSDGWEKQKNRF---LQIPTGRTP----T 951 (1114)
Q Consensus 886 iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~l~s~s-~D-----~~v~iwd~~~~~~~~~~~---~~~~~~~~~----~ 951 (1114)
+||..+++-...-..+..+. .+++..+++++++.|+ .+ ..+.+||..+++-..... ......... .
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 99998764322211122222 3455667999999998 44 569999998743211100 001111000 0
Q ss_pred CCCceEEEEccCCcEEEEEeCCeEEEEEcCCCceeeeeecCC-------CCcCeeEEEEC-CCCCEEEEEEcCC------
Q 001248 952 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE-------SSAPITHATFS-CDSQLVYACFLDA------ 1017 (1114)
Q Consensus 952 ~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-------h~~~v~~l~~s-~dg~~l~s~s~Dg------ 1017 (1114)
...+..+. -.+|..+..+....+..||..+........... ....-.++.|. .++++++.|+.++
T Consensus 349 ~~~iyv~G-g~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~ 427 (656)
T 1k3i_A 349 DNHAWLFG-WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 427 (656)
T ss_dssp TCSCCEEE-CGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred CCceEEEE-CCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence 00111111 123333322334568889988776443222110 01123444443 4788888887543
Q ss_pred -----eEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-----------CcEEEEeccCCC
Q 001248 1018 -----TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----------GGVHVFEPLESE 1081 (1114)
Q Consensus 1018 -----~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-----------g~v~vW~i~~~~ 1081 (1114)
.|.+||..+..-.... ...++.+.. -. .++..| |+++++.|+.+ ..+.+||+.+.+
T Consensus 428 ~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R~---~~--~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 428 TTNAHIITLGEPGTSPNTVFA--SNGLYFART---FH--TSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCCEEEEECCSTTSCCEEEEC--TTCCSSCCB---SC--EEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCcceEEEcCCCCCCCeeEEc--cCCCCCCcc---cC--CeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 6888888777654332 011232211 11 345556 68899999865 578999998755
No 288
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.03 E-value=0.0012 Score=73.63 Aligned_cols=208 Identities=6% Similarity=-0.042 Sum_probs=133.4
Q ss_pred CCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCC----ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
...+..++|++.+..|.... .+.|+.+++... .....+.........+++.+.++++.++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45578899998777777665 688999998752 222223333456788999975566666666788999999876
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
......+........+|++.|.+.+|+.+.. .+.|...+++...... ... .+ ......+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~--~~----l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT--EN----IQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EEC--SS----CSCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEE--CC----CCceEEEEEEeCCCEEEE
Confidence 5443334334455789999997766665543 3678888887643211 111 11 124589999998877776
Q ss_pred E--eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 970 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 970 ~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+ ..+.|..+|+..............-.....|++. .+.++++-...+.|..+|..+|+.+..+.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 4 5678999998754433322222223456677773 33344455566789999988887776654
No 289
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.03 E-value=0.0025 Score=70.87 Aligned_cols=215 Identities=10% Similarity=-0.030 Sum_probs=128.4
Q ss_pred EeccCCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCC
Q 001248 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG 432 (1114)
Q Consensus 353 ~~~~h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg 432 (1114)
........+..++|.+.+.+|+.+-...+.|..+++.++.... ++.........+++.+.+
T Consensus 110 ~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd~~~ 170 (386)
T 3v65_B 110 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVDWVH 170 (386)
T ss_dssp EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------------EECSSCSCCCCEEEETTT
T ss_pred EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------------EEeCCCCCccEEEEEeCC
Confidence 3344556689999998877777777777899999988764322 111112245678999865
Q ss_pred CeEE-EEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC-CCEEEEeCCCCcceeEeecccc
Q 001248 433 SLFG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEA 510 (1114)
Q Consensus 433 ~~la-s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~h~~ 510 (1114)
..|. +-...+.|.+.++....... .+...-.....+++.|.+..+ +++-... +.|...++............-.
T Consensus 171 g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~l-y~td~~~~~~I~r~~~dG~~~~~~~~~~~~ 246 (386)
T 3v65_B 171 DKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGTI-YWTDWGNTPRIEASSMDGSGRRIIADTHLF 246 (386)
T ss_dssp TEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTEE-EEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred CeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCeE-EEeccCCCCEEEEEeCCCCCcEEEEECCCC
Confidence 5554 44556778888887543221 222333567899999987763 4444444 7788888654332222333344
Q ss_pred CEEEEeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEE
Q 001248 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~ 590 (1114)
....+++++.. +.+.++-+..+.|..+|++.......+.........+++. .+..++
T Consensus 247 ~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~----------------------~~~ly~ 303 (386)
T 3v65_B 247 WPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF----------------------EDSLYW 303 (386)
T ss_dssp CEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE----------------------TTEEEE
T ss_pred CeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE----------------------CCEEEE
Confidence 57788886543 3455566667889988886533332222222223333331 122344
Q ss_pred EEeCCCeEEEEECCCcceEEEec
Q 001248 591 AAGDDFSIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 591 ~~~~dg~i~iwd~~~~~~~~~~~ 613 (1114)
+-...+.|..++..+|+.+..+.
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEc
Confidence 55567778888866666655554
No 290
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.95 E-value=0.09 Score=64.43 Aligned_cols=498 Identities=11% Similarity=0.038 Sum_probs=243.8
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA 438 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 438 (1114)
..|+++.. .+|. |-.|+.+ .+..+|..+++.... . . .. -.-....|.++....+|.+.+ |
T Consensus 103 ~~i~~i~~-~~g~--lWigt~~-Gl~~~~~~~~~~~~~------~------~-~~--~~l~~~~i~~i~~d~~g~lWi-g 162 (758)
T 3ott_A 103 TDVRTMAL-QGDT--LWLGALN-GLYTYQLQSRKLTSF------D------T-RR--NGLPNNTIYSIIRTKDNQIYV-G 162 (758)
T ss_dssp SCEEEEEE-ETTE--EEEEETT-EEEEEETTTCCEEEE------C------H-HH--HCCSCSCEEEEEECTTCCEEE-E
T ss_pred ceEEEEEe-cCCc--EEEEcCC-cceeEeCCCCeEEEe------c------c-CC--CCcCCCeEEEEEEcCCCCEEE-E
Confidence 35777754 4665 3445554 688888876543221 0 0 00 011234688998888887665 4
Q ss_pred eCCCeEEEEEccCCceeeeeEeecc----ccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEeeccccCEEE
Q 001248 439 YSRHIVQIYSYHGGDEVRQHLEIDA----HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514 (1114)
Q Consensus 439 ~~dg~i~iwd~~~~~~~~~~~~l~~----h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 514 (1114)
+.+| +..++..+++.... .+.. ....|.++....++..+.+.+ . +-+..+|..+++......-....|.+
T Consensus 163 t~~G-l~~~~~~~~~~~~~--~~~~~~~~~~~~i~~i~~d~~~~~lWigt--~-~Gl~~~~~~~~~~~~~~~l~~~~i~~ 236 (758)
T 3ott_A 163 TYNG-LCRYIPSNGKFEGI--PLPVHSSQSNLFVNSLLEDTTRQCVWIGT--E-GYLFQYFPSTGQIKQTEAFHNNSIKS 236 (758)
T ss_dssp ETTE-EEEEETTTTEEEEE--CCCCCTTCSSCCEEEEEEETTTTEEEEEE--E-EEEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred eCCC-HhhCccCCCceEEe--cCCCccccccceeEEEEEECCCCEEEEEE--C-CCCeEEcCCCCeEEeccCCCCCeEEE
Confidence 4444 77888776543211 1111 122488888877776433433 2 35888897766533211112345777
Q ss_pred EeeccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeC
Q 001248 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD 594 (1114)
Q Consensus 515 ~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 594 (1114)
+.. +.+|. |..|+. +-+.+++..+..... +..... .. .+.....+.++..+.+++ |-.|+.
T Consensus 237 i~~--d~~g~-lWigT~-~Gl~~~~~~~~~~~~-~~~~~~----------~~---~~l~~~~i~~i~~D~~g~-lWiGT~ 297 (758)
T 3ott_A 237 LAL--DGNGD-LLAGTD-NGLYVYHNDTTPLQH-IIHDSR----------NI---QSLTNNIIWNIFADQEHN-IWLGTD 297 (758)
T ss_dssp EEE--CTTCC-EEEEET-TEEEEECCTTSCCEE-ECCCTT----------CT---TSCSCSCEEEEEECTTCC-EEEEES
T ss_pred EEE--cCCCC-EEEEeC-CceeEEecCCCcEEE-EEcCCC----------Cc---CcCCcCeEEEEEEcCCCC-EEEEeC
Confidence 663 44544 444554 457778765533221 110000 00 001112344444444444 444555
Q ss_pred CCeEEEEECCCcceEEEec---cCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCcc-ceeeccccccccccCCCC
Q 001248 595 DFSIKFWDMDSVQLLTSID---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR-LLRTFENLAYDASRTSEN 670 (1114)
Q Consensus 595 dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 670 (1114)
.| +.++.....-...... .......|.++....+|.+.+. +.+| +..++..++.. ....+.
T Consensus 298 ~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~------------ 362 (758)
T 3ott_A 298 YG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYR------------ 362 (758)
T ss_dssp SS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEEC------------
T ss_pred Cc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEec------------
Confidence 56 4444322111111111 0111234677777777776654 4444 54554333210 000000
Q ss_pred CCCCccchhhhhhhhccccccccccccccccCCCCCCccccCCCcccccccCCCceeEEEeccCCCCccccccccCcccc
Q 001248 671 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 750 (1114)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 750 (1114)
.... . . ...
T Consensus 363 ------------------------------------------------------------~~~~--~---~------~l~ 371 (758)
T 3ott_A 363 ------------------------------------------------------------MGDK--T---Y------PLS 371 (758)
T ss_dssp ------------------------------------------------------------TTCS--S---S------CCS
T ss_pred ------------------------------------------------------------cCCc--C---C------CCC
Confidence 0000 0 0 002
Q ss_pred ccceEEEEEccCcceeeecccCceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCC
Q 001248 751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830 (1114)
Q Consensus 751 ~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~ 830 (1114)
...|.++....+|+..+ ++. +-+..++.....+. .+.... .........|.++....+|
T Consensus 372 ~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~------------~~~~~~-------~~~~~~~~~v~~i~~d~~g 430 (758)
T 3ott_A 372 HNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFI------------HYNIVD-------NTGTYNTNWTYYIFEDTAG 430 (758)
T ss_dssp CSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEE------------EEEEEC-------CC--CBSSSEEEEEECTTS
T ss_pred CCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEE------------EeecCC-------CcCCCCCceEEEEEEcCCC
Confidence 24577777777777444 343 45666664422110 000000 0000023457778877777
Q ss_pred CEEEEEeCCeEEEEEcCCC-----ccc---cc---cCC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEee
Q 001248 831 SYVMSASGGKISLFNMMTF-----KTM---AT---FMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL 898 (1114)
Q Consensus 831 ~~l~~~~dg~i~iwd~~~~-----~~~---~~---~~~-~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l 898 (1114)
.+.+....+.|.++|..+. ... .. ..+ ....|.++...+ +|++.+.++..+-|..+|..+++.....
T Consensus 431 ~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~~~ 509 (758)
T 3ott_A 431 QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTKLF 509 (758)
T ss_dssp EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEEEC
T ss_pred CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEEec
Confidence 6555444667888886531 111 01 111 223588898888 7776653333455888998877654322
Q ss_pred cc---cccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeE
Q 001248 899 KG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQL 975 (1114)
Q Consensus 899 ~~---h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i 975 (1114)
.. ....+.++....+|.+.+. +..| +..++..+...... . ..+-. ...|.++... +|.+.+++ +..+
T Consensus 510 ~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~---~-~~gl~--~~~i~~i~~~-~g~lWi~t-~~Gl 579 (758)
T 3ott_A 510 ADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSI---S-FGSFS--NNEILSMTCV-KNSIWVST-TNGL 579 (758)
T ss_dssp TTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBC---C-CCC-----CCEEEEEEE-TTEEEEEE-SSCE
T ss_pred CCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEe---c-ccCCC--ccceEEEEEC-CCCEEEEC-CCCe
Confidence 11 1346788888888877764 4455 88888766432211 1 11111 1356777664 66554444 5668
Q ss_pred EEEEcCCCceeeeeecCCCCcCeeEEEEC-CCCCEEEEEEcCCeEEEEEc
Q 001248 976 AIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCVFSA 1024 (1114)
Q Consensus 976 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~s~Dg~I~vwd~ 1024 (1114)
..||..+.+... +... ...+....+. ++|. |+.|+.+|.+++ +.
T Consensus 580 ~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~G~-l~fG~~~Gl~~f-~p 624 (758)
T 3ott_A 580 WIIDRKTMDARQ-QNMT--NKRFTSLLFDPKEDC-VYLGGADGFGIS-HS 624 (758)
T ss_dssp EEEETTTCCEEE-C--C--CCCCSEEEEETTTTE-EEEECBSEEEEE-EC
T ss_pred EEEcCCCceeEE-ecCC--CCceeeeEEECCCCc-EEEecCCceEEE-Ch
Confidence 889988765432 2111 2233444443 4554 555777775554 44
No 291
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.88 E-value=0.00012 Score=88.26 Aligned_cols=207 Identities=6% Similarity=-0.040 Sum_probs=127.1
Q ss_pred CCccEEEEeeCCCEEEEEe--CCeEEEEEcCC----CccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccc
Q 001248 819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 892 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~ 892 (1114)
..+..++|++.+..|..+. .+.|+.+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4467889998887777775 57899999875 22222222222345678888646666666666789999998765
Q ss_pred eEEEeecccccCeeEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 893 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
.....+........+|++.|++.+|+.+.. . +.|.+++++...... .+. .. ......|+|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~-~~-----l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT-EN-----IQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESC-SS-----CSSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEe-CC-----CCCccEEEEeccCCEEEEE
Confidence 433333333345678999987665555443 2 678888776532211 110 11 1245789999987666653
Q ss_pred --eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 971 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 971 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
..+.|.++++........+...........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 567899999875333222211112234556666443 344445556889999999999887765
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.87 E-value=0.0028 Score=71.41 Aligned_cols=253 Identities=12% Similarity=0.104 Sum_probs=134.7
Q ss_pred CCceEEEEcCC--CCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEE
Q 001248 359 SSPMSMDFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436 (1114)
Q Consensus 359 ~~v~~v~~spd--g~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 436 (1114)
....+++|+|+ +..|+++ ...+.|+.+|..+++... +.........++|+++|++++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence 35679999995 3434444 334899999998776543 222334689999999999444
Q ss_pred EEeCC---Ce-EEEEEccCCceeeeeEeeccccCCeeEEEecC-CCCeeEEEEecCCCCEEEEeCCCCcceeEeec--cc
Q 001248 437 VAYSR---HI-VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG--HE 509 (1114)
Q Consensus 437 s~~~d---g~-i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--h~ 509 (1114)
+.... .. +...+...+.... ..+. .-.....+++.| +|. +.++-..++.|+.+|..++.....+.. ..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 43311 22 3333333222111 1111 223457789999 555 555666678899999887765333221 12
Q ss_pred cCEEEEeeccCCCce-EEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEec--CCCe--EEeeecccceeEEEe--
Q 001248 510 APVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA--DGTR--TYQGFRKRSLGVVQF-- 582 (1114)
Q Consensus 510 ~~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--~g~~--~~~~~~~~~v~~~~~-- 582 (1114)
..-..++|++ +++ +.++-...+.|..++++....... .+..++-.. .|.. ......-.....+++
T Consensus 273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~------~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~ 344 (433)
T 4hw6_A 273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLA------VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK 344 (433)
T ss_dssp SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBC------CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccC------cEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence 2234577654 445 455555678899988763211100 000111000 0000 000000112334566
Q ss_pred -------cCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCC----------------CCCcCeEEEc-CCCCEEEEEeC
Q 001248 583 -------DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------------LPASPRIRFN-KDGCLLAVSTN 638 (1114)
Q Consensus 583 -------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~d~~~l~~~~~ 638 (1114)
.++++++++-...+.|+.++. +|... ++.+.+. ...-..++++ ++|.++++-..
T Consensus 345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 422 (433)
T 4hw6_A 345 NEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD 422 (433)
T ss_dssp CGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence 556666666667788888885 55433 3322111 1223468888 56666555555
Q ss_pred CCcEEEEEc
Q 001248 639 DNGIKILAT 647 (1114)
Q Consensus 639 dg~i~iwd~ 647 (1114)
.+.|+.+++
T Consensus 423 n~rIr~i~~ 431 (433)
T 4hw6_A 423 NHRVRKIAP 431 (433)
T ss_dssp GTEEEEEEE
T ss_pred CCEEEEEec
Confidence 667777665
No 293
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=0.0038 Score=70.35 Aligned_cols=156 Identities=12% Similarity=0.054 Sum_probs=95.1
Q ss_pred CCceEEEEcC-CCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEE
Q 001248 359 SSPMSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV 437 (1114)
Q Consensus 359 ~~v~~v~~sp-dg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 437 (1114)
.....|+|+| ++..|.++ ...+.|+.+|+.++.... +.........|+|+++|++|.+
T Consensus 137 ~~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv 195 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII 195 (430)
T ss_dssp SCCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred CCCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence 4568999998 45544554 334889999988765432 1123346889999999996666
Q ss_pred EeCC----C-eEEEEEccCCceeeeeEeeccccCCeeEEEecC-CCCeeEEEEecCCCCEEEEeCCCCcceeEeec-ccc
Q 001248 438 AYSR----H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-HEA 510 (1114)
Q Consensus 438 ~~~d----g-~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~ 510 (1114)
+... . .+.+.+. .+.... ...+.. ......++++| ++. ++++-..++.|..++...+........ ...
T Consensus 196 ad~~~~~~~~~v~~~~~-~g~~~~-~~~l~~-~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 196 TNDQNNNDRPNNYILTR-ESGFKV-ITELTK-GQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EECCSCTTSEEEEEEEG-GGTSCS-EEEEEE-CSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EeCCCCcccceEEEEeC-CCceee-eeeecc-CCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 6542 2 2333443 332221 012221 23457889999 555 566666778899999876654222221 223
Q ss_pred CEEEEeeccCCCce-EEEEEecCCeEEEEEcCC
Q 001248 511 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDN 542 (1114)
Q Consensus 511 ~v~~~~~~~~~~~~-~l~s~~~d~~i~~wd~~~ 542 (1114)
....++|++ +|+ ++++-...+.|..++.+.
T Consensus 271 ~P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 271 WEFHIQFHP--SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred cceeEEEcC--CCCEEEEEECCCCEEEEEeCCc
Confidence 466788755 456 455556678899988764
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.81 E-value=0.0042 Score=66.72 Aligned_cols=204 Identities=7% Similarity=-0.033 Sum_probs=130.5
Q ss_pred CccEEEEeeCCCEEEEEe--CCeEEEEEcCCCcccc-ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEE
Q 001248 820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 896 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~ 896 (1114)
.+.+++|++.+..|.... .+.|..++........ .+...-.....+++.+.+++++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 356788988766666665 6889999987653222 2222223567899987466666766677899999987543222
Q ss_pred eecccccCeeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE--eC
Q 001248 897 KLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE 972 (1114)
Q Consensus 897 ~l~~h~~~V~~l~~s~d~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d 972 (1114)
.+........++++.|.+.+|..+.. .+.|...+++...... ... .+ ......+++++++..|..+ ..
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~--~~----l~~Pnglavd~~~~~lY~aD~~~ 187 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--IIN--SE----IYWPNGLTLDYEEQKLYWADAKL 187 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE--EEC--SS----CSCEEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE--EEE--CC----CCCccEEEEeccCCEEEEEECCC
Confidence 23334456789999987666666553 5778888887532211 111 11 1245899999977777664 56
Q ss_pred CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeC
Q 001248 973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 973 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+.|..+|..... .+.+.. +.......+++.. +.++++-...+.|..++..+|+....+.
T Consensus 188 ~~I~~~d~dG~~-~~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 188 NFIHKSNLDGTN-RQAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TEEEEEETTSCS-CEEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEEcCCCCc-eEEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 789999986433 333321 2345677888753 3344455566889999998888766654
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.80 E-value=0.0036 Score=66.26 Aligned_cols=196 Identities=8% Similarity=0.154 Sum_probs=124.6
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCccccccCCCCCCeEEEEEecC---CCc---EEEEEe-C--CCcEEEEEc--ccceEEE
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ---DNN---IIAIGM-D--DSSIQIYNV--RVDEVKS 896 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~---d~~---~la~g~-~--dg~v~iwd~--~~~~~~~ 896 (1114)
...+++... .+.+.+||+ +++.++.+.. +.+..+.+-|. +++ ++++.. . +++|.+|++ .+++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 334444444 688999999 8888888763 56777776651 122 233333 3 579999977 3443 44
Q ss_pred eecc------cc-cCeeEEEE--cCC-CC-EEEEEeCCCcEEEEeCCC---CccccccccccCCCCCCCCCCceEEEEcc
Q 001248 897 KLKG------HS-KRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDG---WEKQKNRFLQIPTGRTPTAQSDTRVQFHQ 962 (1114)
Q Consensus 897 ~l~~------h~-~~V~~l~~--s~d-~~-~l~s~s~D~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~i~~v~fsp 962 (1114)
.+.. .. ..+..+|+ ++. ++ ++++...+|.+..|++.. +.. ..+.+..+.-. +.+..++..+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~-~~~lVR~f~lg----sq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI-SGKKVRAFKMN----SQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE-EEEEEEEEECS----SCEEEEEEET
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc-cceEEEEecCC----CCcceEEEcC
Confidence 4421 11 56788888 774 44 688888899999999843 211 12222222211 3578899999
Q ss_pred CCcEEEEE-eCCeEEEEEcC-----CCceeeeeecCCC-CcCeeEEEE--CCCCC-EEEEEE-cCCeEEEEEcC-CCeee
Q 001248 963 DQIHFLVV-HETQLAIFETT-----KLECVKQWVPRES-SAPITHATF--SCDSQ-LVYACF-LDATVCVFSAA-NLKLR 1030 (1114)
Q Consensus 963 dg~~l~~~-~d~~i~iwd~~-----~~~~~~~~~~~~h-~~~v~~l~~--s~dg~-~l~s~s-~Dg~I~vwd~~-~~~~~ 1030 (1114)
....|.++ .+..|..|+.. +++.+..+.. +| ...+..|++ .++++ ||++++ .+.+..|||.. +.+.+
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 88888886 45556666644 2344444322 33 347888888 56777 777777 56799999996 78888
Q ss_pred EEeC
Q 001248 1031 CRIN 1034 (1114)
Q Consensus 1031 ~~~~ 1034 (1114)
..+.
T Consensus 269 g~f~ 272 (355)
T 3amr_A 269 ADFR 272 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.75 E-value=0.0066 Score=73.42 Aligned_cols=207 Identities=7% Similarity=-0.055 Sum_probs=130.2
Q ss_pred CCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCC----ccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
...+..+++++....|.... .+.|+.+++... .....+.........|++.+.+++++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 34567899998766666665 588999998753 222223323455778999984556777777788999999875
Q ss_pred ceEEEeecccccCeeEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 892 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
......+........+|++.|.+.+|+.+.. . +.|.+.+++...... .+ ... ......|++.+.+..|..
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~--lv---~~~---l~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV---TEN---IQWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EE---CSS---CSCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--EE---eCC---CCCceEEEEecCCCeEEE
Confidence 5433333334456789999998666666553 2 678888887643211 11 111 124689999987777766
Q ss_pred E--eCCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcCCCeeeEEeC
Q 001248 970 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 970 ~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1034 (1114)
+ ....|..+++..............-.....|++. +.+|+.+. ..+.|...+..+|+.+..+.
T Consensus 575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 4 5568999998655443333322223345667763 44555554 55788888888886665553
No 297
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=0.0048 Score=69.45 Aligned_cols=253 Identities=8% Similarity=-0.003 Sum_probs=139.3
Q ss_pred ceEEEEEcc-Ccceeeeccc-CceEEEEeecccccCCCCCccccccccccCCCCCccccccCCCCCCCCCccEEEE----
Q 001248 753 KISRLIFTN-SGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL---- 826 (1114)
Q Consensus 753 ~i~~l~~s~-~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~---- 826 (1114)
....|+|+| +...|+++.. .+.|++.|+.. +.+....-.+.........++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~----------------------~~v~~l~~~~~~~~~~p~~ia~~~~~ 197 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN----------------------RMLSSPLNINTIPTNRIRSIAFNKKI 197 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT----------------------TEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC----------------------CEEEEEEccCccccCCCcEEEEeecc
Confidence 467889998 3554555444 35566655432 2222110011012335788999
Q ss_pred ---eeCCCEEEEEe-CC-------eEEEEEcCC-Cccc-----cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEc
Q 001248 827 ---SKNDSYVMSAS-GG-------KISLFNMMT-FKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV 889 (1114)
Q Consensus 827 ---s~d~~~l~~~~-dg-------~i~iwd~~~-~~~~-----~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~ 889 (1114)
+++|++|.++. .+ .|.+++... +... ..+.. -.....++++|+++.++++-..++.|+.+|+
T Consensus 198 ~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 198 EGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp TTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred cccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 99999777776 32 266665443 2221 12211 1234577889966777777778889999999
Q ss_pred c-------cceE-----------EEee--cccccCeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCc--ccccccccc--
Q 001248 890 R-------VDEV-----------KSKL--KGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWE--KQKNRFLQI-- 944 (1114)
Q Consensus 890 ~-------~~~~-----------~~~l--~~h~~~V~~l~~s~d~~~l~s~-s~D~~v~iwd~~~~~--~~~~~~~~~-- 944 (1114)
. ++.. ...+ .+....-+.|+|+|+|++|..+ +....|+.++.+... ......+.-
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~ 356 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY 356 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC
Confidence 8 5543 1121 1122345789999999965444 556778886654321 100000100
Q ss_pred -CCCCCC------CCCCce-EEEEc-------cCCcEEEE-EeCCeEEEEEcCCCceeeeeecC------------C---
Q 001248 945 -PTGRTP------TAQSDT-RVQFH-------QDQIHFLV-VHETQLAIFETTKLECVKQWVPR------------E--- 993 (1114)
Q Consensus 945 -~~~~~~------~~~~i~-~v~fs-------pdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~------------~--- 993 (1114)
..+... ...... .++.. ++|.++++ .....|+.++ .++. +.++... +
T Consensus 357 g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~d 434 (496)
T 3kya_A 357 KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDD 434 (496)
T ss_dssp TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCC
T ss_pred CCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCC
Confidence 011100 011234 45554 45666666 5778899998 4453 3333211 1
Q ss_pred -------CCcCeeEEEECCC-CCEEEEEEcCCeEEEEEcCCCeee
Q 001248 994 -------SSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLR 1030 (1114)
Q Consensus 994 -------h~~~v~~l~~s~d-g~~l~s~s~Dg~I~vwd~~~~~~~ 1030 (1114)
.-.....|+++++ |.+.++=...++|+.++++.....
T Consensus 435 G~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 435 GDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 1134678999987 555555555678998888765544
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=0.0075 Score=67.87 Aligned_cols=253 Identities=9% Similarity=0.015 Sum_probs=143.1
Q ss_pred CccEEEEee-CCCEEEEEe--CCeEEEEEcCCCccccccCC---CCCCeEEEEE-------ecCCCcEEEEEeCCC----
Q 001248 820 AVPCFALSK-NDSYVMSAS--GGKISLFNMMTFKTMATFMP---PPPAATFLAF-------HPQDNNIIAIGMDDS---- 882 (1114)
Q Consensus 820 ~v~~v~~s~-d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~---~~~~i~~l~~-------sp~d~~~la~g~~dg---- 882 (1114)
....++++| +...|.++. .+.|++.|+.++........ .......++| ++ +++.|.++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 355555554 36799999887665443332 1235899999 99 777555555443
Q ss_pred ---cEEEEEccc-ceEE-----EeecccccCeeEEEEcCC-CCEEEEEeCCCcEEEEeCC-------CCccc-----c--
Q 001248 883 ---SIQIYNVRV-DEVK-----SKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSD-------GWEKQ-----K-- 938 (1114)
Q Consensus 883 ---~v~iwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-~~~l~s~s~D~~v~iwd~~-------~~~~~-----~-- 938 (1114)
.|.+++... ++.. ..+.. -....+++++|+ +.++++-..++.|..+|++ ++..- .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665433 2221 12211 123467889995 5555666677889999987 44320 0
Q ss_pred ---ccccccCCCCCCCCCCceEEEEccCCcEEEEE--eCCeEEEEEcC--CCce--eeeeec----CCC---------Cc
Q 001248 939 ---NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVP----RES---------SA 996 (1114)
Q Consensus 939 ---~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~----~~h---------~~ 996 (1114)
......... .....++|+|+|++|.++ ....|+.++.. ++.. ...+.. .++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 011111111 235799999999965554 56788886543 3321 011111 111 12
Q ss_pred Cee-EEEEC-------CCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcc-----------cCCC---CCCCCccceEEE
Q 001248 997 PIT-HATFS-------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAY-----------LPAG---VSSSNVHPLVIA 1054 (1114)
Q Consensus 997 ~v~-~l~~s-------~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~-----------~~~~---~~~~~v~~~~~~ 1054 (1114)
... .++.. ++|.+.++=...++|+.++ .+|... ++..... ...| ....--.|..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 344 45554 4566666666678999999 566433 3321100 0011 011223477899
Q ss_pred ecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1055 AHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1055 ~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
++++++.+.++=.....|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998435555555566789999887765
No 299
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.72 E-value=0.011 Score=63.42 Aligned_cols=210 Identities=11% Similarity=0.015 Sum_probs=123.4
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE-EE
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GV 437 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as 437 (1114)
..+.+++|.+.+..|..+-...+.|..+++.++..... ++...-.....+++.+.+..| ++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~~ 96 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYWT 96 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEEE
Confidence 45679999997776777777778899999876532110 011112356789999755544 44
Q ss_pred EeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEEEEe
Q 001248 438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVC 516 (1114)
Q Consensus 438 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~ 516 (1114)
-...+.|.+++.+...... .+.........+++.|.+..+++.-.+..+.|...++. |.....+ ...-.....++
T Consensus 97 d~~~~~I~~~~~dG~~~~~---l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pngla 172 (318)
T 3sov_A 97 DSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLT 172 (318)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEE
T ss_pred ECCCCEEEEEECCCCcEEE---EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEEE
Confidence 4566789999987643221 12233456789999987775333322345778888865 4333333 22334567888
Q ss_pred eccCCCceEEEEEecCCeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCC
Q 001248 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF 596 (1114)
Q Consensus 517 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 596 (1114)
+++.. +.+.++-+..+.|..+|++.................+++.. +..+.+-...+
T Consensus 173 vd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~----------------------~~lywtd~~~~ 229 (318)
T 3sov_A 173 LDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE----------------------DILYWTDWSTH 229 (318)
T ss_dssp EETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET----------------------TEEEEEETTTT
T ss_pred EeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC----------------------CEEEEEecCCC
Confidence 76543 34555666678899998875333222221222233333321 12344444677
Q ss_pred eEEEEECCCcceEEEec
Q 001248 597 SIKFWDMDSVQLLTSID 613 (1114)
Q Consensus 597 ~i~iwd~~~~~~~~~~~ 613 (1114)
.|..++..+|+....+.
T Consensus 230 ~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 230 SILACNKYTGEGLREIH 246 (318)
T ss_dssp EEEEEETTTCCSCEEEE
T ss_pred eEEEEECCCCCceEEEe
Confidence 88888887776655553
No 300
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.64 E-value=0.081 Score=54.75 Aligned_cols=235 Identities=15% Similarity=0.129 Sum_probs=152.1
Q ss_pred ccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceEEEeec
Q 001248 821 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLK 899 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~ 899 (1114)
..+..++|..+.+|.-...++.+||+++...+....- ...|.-=.|-. .+.|+..+ +..|+-|++.. ..+.+.+.
T Consensus 69 AdsAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFd 144 (365)
T 2xzh_A 69 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD 144 (365)
T ss_dssp CSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEE
T ss_pred cceeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeee
Confidence 4567789999999888888999999999888777664 34677777763 45666665 45899999975 34555555
Q ss_pred ccc----cCeeEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCc---
Q 001248 900 GHS----KRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI--- 965 (1114)
Q Consensus 900 ~h~----~~V~~l~~s~d~~~l~s~s~-------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~--- 965 (1114)
-|. ..|..-..+++.+|++..+- .|.+.+|..+.+. -+..+||.. .-..+-.+|.
T Consensus 145 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~ 213 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEE 213 (365)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSC
T ss_pred cchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------cceeeeeee-----eeEEEecCCCCCC
Confidence 443 45777778899999875543 2678899988743 334444421 1112222222
Q ss_pred --EEEEEe----CCeEEEEEcCCC---c------eeee-eecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCee
Q 001248 966 --HFLVVH----ETQLAIFETTKL---E------CVKQ-WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1114)
Q Consensus 966 --~l~~~~----d~~i~iwd~~~~---~------~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~ 1029 (1114)
+++.+. .+++.|-++... . .+.. +..+.-.+-..++.+|+.-..++..+.-|.|++||+.||.+
T Consensus 214 ~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 214 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred ceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcE
Confidence 222232 257888887432 1 1111 12223355677888899888999999999999999999999
Q ss_pred eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1030 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+.+-+.+ ...+. ..+.+... .=++.....|.|.--.+.+..
T Consensus 294 i~~nrIS--------~d~iF--~ta~~~~~-~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 294 IYMNRIS--------GETIF--VTAPHEAT-AGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEEECC--------SSCEE--EEEEEGGG-TEEEEEETTCEEEEEEECTTT
T ss_pred EEEeccC--------CCceE--EecccCCC-CcEEEEcCCCEEEEEEECccc
Confidence 9876622 11133 22333222 335555688988888877765
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.60 E-value=0.0066 Score=64.26 Aligned_cols=192 Identities=11% Similarity=0.108 Sum_probs=118.5
Q ss_pred CcEEEEEeCCCcEEEEEcccceEEEeecccccCeeEEEEcCC----CC---EEEEEe-C--CCcEEEEeCC--CCccccc
Q 001248 872 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LN---VLVSSG-A--DSQLCVWSSD--GWEKQKN 939 (1114)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~---~l~s~s-~--D~~v~iwd~~--~~~~~~~ 939 (1114)
..+++.....+-+.+||+ +|+.+..+.. +.++.|..-|+ |+ ++++.. . +++|.+|+++ +++....
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 345555566788999999 7888888864 56777776653 22 233333 3 5789999774 3221111
Q ss_pred cccccCCCCCCCCCCceEEEE--ccC-Cc-EEEE-EeCCeEEEEEc-------CCCceeeeeecCCCCcCeeEEEECCCC
Q 001248 940 RFLQIPTGRTPTAQSDTRVQF--HQD-QI-HFLV-VHETQLAIFET-------TKLECVKQWVPRESSAPITHATFSCDS 1007 (1114)
Q Consensus 940 ~~~~~~~~~~~~~~~i~~v~f--spd-g~-~l~~-~~d~~i~iwd~-------~~~~~~~~~~~~~h~~~v~~l~~s~dg 1007 (1114)
......-+ .....+..+|+ +|. ++ ++++ ..++.+..|++ .+.+.++++.. .+.+..+...+..
T Consensus 117 ~~~~~pv~--t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~~ 191 (355)
T 3amr_A 117 TDPDHPIA--TAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDEY 191 (355)
T ss_dssp SCTTSCEE--CCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETTT
T ss_pred cccccCcC--CCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCCC
Confidence 00000000 00135677887 774 54 4444 57889999888 33466777765 3578899999999
Q ss_pred CEEEEEEcCCeEEEEEcC-----CCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCC-eEEEEe-CCCcEEEEecc
Q 001248 1008 QLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPL 1078 (1114)
Q Consensus 1008 ~~l~s~s~Dg~I~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-~l~s~~-~Dg~v~vW~i~ 1078 (1114)
.+|+.+-+|.-|..++.+ +++++..+.. ++-...+.-+++-..+ +++ +|++.+ .++++.|||..
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~------g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG------RHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS------SSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecC------CccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence 999999999777777755 4556655531 1111124434444344 344 666665 67899999996
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.47 E-value=0.015 Score=60.92 Aligned_cols=203 Identities=11% Similarity=0.061 Sum_probs=124.0
Q ss_pred CCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCcccc-ccCC----CC--CCeEEEEE---ecCCCcEEEEEeC-----
Q 001248 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA-TFMP----PP--PAATFLAF---HPQDNNIIAIGMD----- 880 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~-~~~~----~~--~~i~~l~~---sp~d~~~la~g~~----- 880 (1114)
..-..+++|.+....+..++ .++|..|+...+.... .+.+ .. ..+..+.| .| +++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence 33456789988666666665 8999999997554322 2322 11 13578999 68 6888876442
Q ss_pred --------CCcEEEEEcc---cceEEEeec--ccc-----------cCeeEEEEcCCCCEEEEEeCC-CcEEEEeCCCCc
Q 001248 881 --------DSSIQIYNVR---VDEVKSKLK--GHS-----------KRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWE 935 (1114)
Q Consensus 881 --------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~d~~~l~s~s~D-~~v~iwd~~~~~ 935 (1114)
+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+...
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6789999999 777664432 211 247899999999999998888 777666666532
Q ss_pred cccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCCeEEEEEcCCCceeeeeecC--CC---CcCeeEE-EECCCCC
Q 001248 936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ES---SAPITHA-TFSCDSQ 1008 (1114)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~h---~~~v~~l-~~s~dg~ 1008 (1114)
.... .+..... ......+.++++|||+.|++. ..+.|..+|+.+.... .+... +. -.....| ..-.+|+
T Consensus 171 ~~~~-~~~~~~~--~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 171 VSTF-AWESGNG--GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp EEEE-EECCCCS--SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred Eeee-eecCCCc--ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCCE
Confidence 2111 1111111 111356899999999988883 5889999998843220 12111 11 1123333 3334777
Q ss_pred E-EEEEEcCCeEEEEEcC
Q 001248 1009 L-VYACFLDATVCVFSAA 1025 (1114)
Q Consensus 1009 ~-l~s~s~Dg~I~vwd~~ 1025 (1114)
. |++.+..+.+.+.+-+
T Consensus 247 vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWD 264 (334)
T ss_dssp EEEEEEETTEEEEEECSS
T ss_pred EEEEEcCCCCEEEEECCC
Confidence 7 4445455655555543
No 303
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.45 E-value=0.062 Score=64.98 Aligned_cols=208 Identities=11% Similarity=0.007 Sum_probs=115.0
Q ss_pred CCCeeEEEEcCCCCeEE-EEeCCCeEEEEEccCCcee-eeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC
Q 001248 420 GVSVNRVIWSPDGSLFG-VAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1114)
Q Consensus 420 ~~~V~~l~~spdg~~la-s~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 497 (1114)
...+..|+|.+.+..|. +-...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence 34678999998555554 4455678888888753210 011123334456778999988876 45666677899999977
Q ss_pred CCcceeEeeccccCEEEEeeccCCCceEEEEEecC-CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccc
Q 001248 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1114)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~ 576 (1114)
.......+.........|++.+.. +.+.++-... +.|...+++.................|++.+.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~------------ 568 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL------------ 568 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETT------------
T ss_pred CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecC------------
Confidence 444333333344567788876543 3344443233 67777777643333222222234444555443
Q ss_pred eeEEEecCCCCEEEEEe-CCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001248 577 LGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI 651 (1114)
Q Consensus 577 v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~~ 651 (1114)
+..|+.+. ..+.|...++........+...........|++.. +.++++-...+.|...+..++.
T Consensus 569 ---------~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 569 ---------SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp ---------TTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred ---------CCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCc
Confidence 33444443 56788888886544444443322222334566532 2344444456778888877773
No 304
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=97.30 E-value=0.00017 Score=57.78 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=33.1
Q ss_pred CCcchHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCc
Q 001248 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFF 36 (1114)
Q Consensus 1 ~~~~~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~ 36 (1114)
|+....||+.||+.||.|.||..||-+|++||+|.-
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 788899999999999999999999999999999863
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.30 E-value=0.13 Score=55.99 Aligned_cols=109 Identities=16% Similarity=0.136 Sum_probs=63.3
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC---CC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 433 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 433 (1114)
.-...+.++|.|||+ ++++ ..+|.|.+++ .++......+. +..........|+|+|| +.
T Consensus 29 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~--------------v~~~g~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 29 GLEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAELS--------------VYHRGESGLLGLALHPRFPQEP 90 (352)
T ss_dssp CCSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecce--------------EeecCCCCceeEEECCCCCCCC
Confidence 445689999999998 4555 5569999998 44321110000 12222346889999998 55
Q ss_pred eEEEEeC-C-----CeEEEEEccCCce--eeeeE-eec---cccCCeeEEEecCCCCeeEEEEe
Q 001248 434 LFGVAYS-R-----HIVQIYSYHGGDE--VRQHL-EID---AHVGGVNDIAFSHPNKQLCVITC 485 (1114)
Q Consensus 434 ~las~~~-d-----g~i~iwd~~~~~~--~~~~~-~l~---~h~~~V~~v~~s~d~~~~~l~s~ 485 (1114)
+|.++.. . +.|..|+...+.. .+.+. .+. +.......++|.|||. +.++.
T Consensus 91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 5554433 2 5688888775421 11111 122 1112346899999996 44443
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.29 E-value=0.0034 Score=75.51 Aligned_cols=203 Identities=11% Similarity=0.040 Sum_probs=107.9
Q ss_pred CeeEEEEcCCCCeEEEEe-CCCeEEEEEccCC---ceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCC
Q 001248 422 SVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGG---DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~-~dg~i~iwd~~~~---~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~ 497 (1114)
.+..|+|++++..|..+. ..+.|..+++.+. ..... .+.........|++.+.+.. ++++-...+.|.+.++.
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~--~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d~d 483 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK 483 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC--BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEBSS
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE--EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEecC
Confidence 567899999777666654 4578999998751 11111 12112224567888866664 45555667889999976
Q ss_pred CCcceeEeeccccCEEEEeeccCCCceEEEEEecC-CeEEEEEcCCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccc
Q 001248 498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576 (1114)
Q Consensus 498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~ 576 (1114)
.......+.........+++.+.. +.++++-... +.|...++..................|
T Consensus 484 g~~~~~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGl----------------- 545 (699)
T 1n7d_A 484 GVKRKTLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI----------------- 545 (699)
T ss_dssp SCCEEEECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCE-----------------
T ss_pred CCceEEEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEE-----------------
Confidence 544333333222344566654432 2333333222 566666654322221111112223334
Q ss_pred eeEEEecCCCCEE-EEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 577 LGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 577 v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
++++++..| ++-+..+.|.++++........+...........+++..+ .++++....+.|..++..++
T Consensus 546 ----avd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 546 ----TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp ----EECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred ----EEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 444443334 4444667899999865433333322222223456677554 45555566788999988777
No 307
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.27 E-value=0.056 Score=58.91 Aligned_cols=243 Identities=12% Similarity=0.092 Sum_probs=127.5
Q ss_pred CccEEEEeeCCC-EEEEEeCCeEEEEEcCCCc--ccccc----CCCCCCeEEEEEecC---CCcEEEEEeC-------CC
Q 001248 820 AVPCFALSKNDS-YVMSASGGKISLFNMMTFK--TMATF----MPPPPAATFLAFHPQ---DNNIIAIGMD-------DS 882 (1114)
Q Consensus 820 ~v~~v~~s~d~~-~l~~~~dg~i~iwd~~~~~--~~~~~----~~~~~~i~~l~~sp~---d~~~la~g~~-------dg 882 (1114)
....+++.|||+ ++++-..|.|++++..... .+..+ .........++|+|+ ++.+.++-+. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 467899999999 6665558999999854221 11111 112345789999993 3554444332 23
Q ss_pred cEEEEEcccc-------eEE-Eeec-----ccccCeeEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCcc
Q 001248 883 SIQIYNVRVD-------EVK-SKLK-----GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEK 936 (1114)
Q Consensus 883 ~v~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~s~d~~~l~s~s~D-------------~~v~iwd~~~~~~ 936 (1114)
.|..|++..+ +.+ ..+. .|. -..|+|.|||.+.++.+.. +.|.-++.+..-.
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 5666666432 111 1121 132 3579999999766665432 3465566553200
Q ss_pred ccc--------cccccCCCCCCCCCCceEEEEcc-CCcEEEE--EeCCeEEEEEcCCCcee-------------------
Q 001248 937 QKN--------RFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV--VHETQLAIFETTKLECV------------------- 986 (1114)
Q Consensus 937 ~~~--------~~~~~~~~~~~~~~~i~~v~fsp-dg~~l~~--~~d~~i~iwd~~~~~~~------------------- 986 (1114)
... .......++ .....++|.| +|.+.++ +.++.=.|.-+..+.-.
T Consensus 177 ~~npf~~~~~~~~~i~a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCcCCCCCCccEEEEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence 000 000001111 1357899999 6766666 22322233322222110
Q ss_pred ----------eeeecCCCCcCeeEEEECC-------CCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCcc
Q 001248 987 ----------KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1049 (1114)
Q Consensus 987 ----------~~~~~~~h~~~v~~l~~s~-------dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1049 (1114)
..+.. .+...+..++|.. +|.++++.-..+.|...+++.++...... ++. + ..-.
T Consensus 253 ~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~-~---~~~r 324 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT-D---RGQR 324 (353)
T ss_dssp CBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG-G---GCCC
T ss_pred cCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc-C---CCCc
Confidence 00000 1233567788864 46677766677888888887765443321 111 1 1134
Q ss_pred ceEEEecCCCCCeEEEEeCCCcEEEEecc
Q 001248 1050 PLVIAAHPQEPNEFALGLSDGGVHVFEPL 1078 (1114)
Q Consensus 1050 ~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~ 1078 (1114)
+..+++.| ||.+.++.. ++.=+||+|.
T Consensus 325 p~~v~~~p-dG~lyv~td-~~~g~I~ri~ 351 (353)
T 2g8s_A 325 IRDVRTGP-DGYLYVLTD-ESSGELLKVS 351 (353)
T ss_dssp EEEEEECT-TSCEEEEEC-STTEEEEEEE
T ss_pred eeEEEECC-CCcEEEEEe-CCCCEEEEEe
Confidence 66899999 677655433 2333566653
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.25 E-value=0.098 Score=56.92 Aligned_cols=231 Identities=11% Similarity=0.092 Sum_probs=124.7
Q ss_pred CCccEEEEeeCCCEEEEEeCCeEEEEEcCCCc-ccccc---CCCCCCeEEEEEecC---CCcEEEEEeC---C----CcE
Q 001248 819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMATF---MPPPPAATFLAFHPQ---DNNIIAIGMD---D----SSI 884 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~-~~~~~---~~~~~~i~~l~~sp~---d~~~la~g~~---d----g~v 884 (1114)
.....+++.|||+++++-.+|.|++++. +++ .+..+ .........++|+|+ ++.+.++-+. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3467899999998777666899999974 443 22211 122356889999993 3555554432 3 567
Q ss_pred EEEEcccc-------eEE-Eeec---ccccCeeEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCccccc-
Q 001248 885 QIYNVRVD-------EVK-SKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQKN- 939 (1114)
Q Consensus 885 ~iwd~~~~-------~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~s~D-------------~~v~iwd~~~~~~~~~- 939 (1114)
..|+.... +.+ ..+. .|. ...|+|.|||.++++.+.. +.|.-++.+.. ....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~n 184 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADN 184 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCC
Confidence 77776543 111 1122 232 4679999999877775432 34544444431 0000
Q ss_pred ---cccccCCCCCCCCCCceEEEEcc-CCcEEEE--EeCC--eEEEEEcCCCce----------------eeeeecCCCC
Q 001248 940 ---RFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV--VHET--QLAIFETTKLEC----------------VKQWVPRESS 995 (1114)
Q Consensus 940 ---~~~~~~~~~~~~~~~i~~v~fsp-dg~~l~~--~~d~--~i~iwd~~~~~~----------------~~~~~~~~h~ 995 (1114)
.......++ .....++|+| +|.+.++ +.+. .|.+. ..+.- ...+......
T Consensus 185 pf~~~~i~a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 258 (354)
T 3a9g_A 185 PFPNSPIWSYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTGSET 258 (354)
T ss_dssp SSTTCCEEEECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCCcEEEEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence 000001111 1357899999 6776666 2232 23332 22220 0001110113
Q ss_pred cCeeEEEEC-------CCCCEEEEEEcCCeEEEEEcCCC-eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe
Q 001248 996 APITHATFS-------CDSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 996 ~~v~~l~~s-------~dg~~l~s~s~Dg~I~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
..+..++|. .+|.++++....+.|...++... +...... ++. + ..-.+..+++.| ||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~-~---~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFK-N---VFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECT-T---TSCCEEEEEECT-TSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---ecc-C---CCCCeeEEEECC-CCcEEEEEe
Confidence 467888884 56777766666778888888753 3321111 111 1 113456899988 676666553
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.23 E-value=0.32 Score=52.82 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=62.3
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC---CC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 433 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 433 (1114)
.-...+.++|.|||+ |+++ ..+|.|++++ .+++ .....+. +..........|+|+|+ +.
T Consensus 27 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g 88 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKS 88 (354)
T ss_dssp SCSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCC
Confidence 456789999999998 4555 5569999997 3444 1100000 11222346889999998 55
Q ss_pred eEEEEeC----C----CeEEEEEccCC--ce--eeeeE-eec-cccCCeeEEEecCCCCeeEEEEe
Q 001248 434 LFGVAYS----R----HIVQIYSYHGG--DE--VRQHL-EID-AHVGGVNDIAFSHPNKQLCVITC 485 (1114)
Q Consensus 434 ~las~~~----d----g~i~iwd~~~~--~~--~~~~~-~l~-~h~~~V~~v~~s~d~~~~~l~s~ 485 (1114)
+|.++.. + ..|..|+...+ .. .+.+. .+. +.......|+|.|||. +.++.
T Consensus 89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~ 152 (354)
T 3a9g_A 89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITT 152 (354)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEE
Confidence 5544432 3 56777887654 11 11111 121 1112346899999997 44443
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.22 E-value=0.032 Score=60.90 Aligned_cols=233 Identities=12% Similarity=0.072 Sum_probs=119.4
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCcc--cccc---CCCCCCeEEEEEecC---CCcEEEEEeCC-----CcEEE
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATF---MPPPPAATFLAFHPQ---DNNIIAIGMDD-----SSIQI 886 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~--~~~~---~~~~~~i~~l~~sp~---d~~~la~g~~d-----g~v~i 886 (1114)
....+++.|||+++++-.+|.|++++ +++. +..+ .........++|+|+ ++.+.++-..+ +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 46789999999977665589999998 3332 1111 122456889999993 25554444432 67888
Q ss_pred EEcccc-----eE-EEeec---ccccCeeEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCccccc-----
Q 001248 887 YNVRVD-----EV-KSKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQKN----- 939 (1114)
Q Consensus 887 wd~~~~-----~~-~~~l~---~h~~~V~~l~~s~d~~~l~s~s~D-------------~~v~iwd~~~~~~~~~----- 939 (1114)
|+...+ +. +..+. +.......|+|.|||.+.++.+.. +.|.-++.+.. ....
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~-~p~~npf~~ 188 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE-PAPGNPFLG 188 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS-BCTTCTTTT
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC-CCCCCcccC
Confidence 887643 11 22233 111123689999999877765422 44555555431 1000
Q ss_pred ----cccccCCCCCCCCCCceEEEEcc-CCcEEEE-EeCCeE------EEEEcCCCce----------------eeeeec
Q 001248 940 ----RFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHETQL------AIFETTKLEC----------------VKQWVP 991 (1114)
Q Consensus 940 ----~~~~~~~~~~~~~~~i~~v~fsp-dg~~l~~-~~d~~i------~iwd~~~~~~----------------~~~~~~ 991 (1114)
.......++ .....++|+| +|.+.++ .....+ .+.-+..+.- ...+..
T Consensus 189 ~~~~~~~i~a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 189 RRGARPEVYSLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp CTTSCTTEEEECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCccEEEEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 000000111 1346789999 6776666 222221 2333333320 000111
Q ss_pred CCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeE-EeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEe
Q 001248 992 RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC-RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1067 (1114)
Q Consensus 992 ~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~ 1067 (1114)
.+......++| .+|.++++.-..+.|...+++...... ......++.. .-.+..+++.| ||.+.++..
T Consensus 265 -~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~~ 333 (352)
T 2ism_A 265 -PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTTS 333 (352)
T ss_dssp -TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEEC
T ss_pred -CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEEe
Confidence 12335667787 466666655556677777775443110 0000111111 12456788888 576665543
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.19 E-value=0.36 Score=52.09 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=67.8
Q ss_pred CeEEEEEcCCC---cccc-----c--cC--CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeecccccCee
Q 001248 839 GKISLFNMMTF---KTMA-----T--FM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906 (1114)
Q Consensus 839 g~i~iwd~~~~---~~~~-----~--~~--~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~ 906 (1114)
++++|.++... .... . +. ....-..++..|+ .-.++..-+.-|.|++||++++.++..-+-..+.|.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF 304 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence 78999998543 1110 0 11 1133456788888 666888889999999999999999887776777777
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001248 907 GLAFSHALNVLVSSGADSQLCVWSSDGWE 935 (1114)
Q Consensus 907 ~l~~s~d~~~l~s~s~D~~v~iwd~~~~~ 935 (1114)
.-+......=++.....|.|.--.++...
T Consensus 305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 305 VTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred EecccCCCCcEEEEccCceEEEEEEcccc
Confidence 76666665566666788887777776643
No 312
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.17 E-value=0.3 Score=50.64 Aligned_cols=248 Identities=9% Similarity=0.081 Sum_probs=153.5
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCC
Q 001248 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 442 (1114)
Q Consensus 363 ~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 442 (1114)
+.-.+|..+ ++|.-. ..++.|+|+++.+++....+ ...|..=.|-.+. .|+..+ +.
T Consensus 71 sAIMnP~~~-ViALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~t 126 (365)
T 2xzh_A 71 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN 126 (365)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCEEEEEECSSS-EEEEEE-SS
T ss_pred eeeeCCCcc-EEEEec-CCeEEEechHHhhhhcceec--------------------CCccEEEEecCCC-eEEEEc-CC
Confidence 344588887 577654 68899999999988875321 2377777886544 444443 45
Q ss_pred eEEEEEccCCceeeeeEeeccc----cCCeeEEEecCCCCeeEEEEec------CCCCEEEEeCCCCcceeEeeccccCE
Q 001248 443 IVQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 443 ~i~iwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
.|.-|++.......+ .+..| ...|..-..+++.+++ +++|- -.|.+.+|..+.+ .-+.+.||....
T Consensus 127 aVyHWs~~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 202 (365)
T 2xzh_A 127 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 202 (365)
T ss_dssp EEEEEESSTTCCCEE--EEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEE
T ss_pred cEEEEcccCCCCCce--eeecchhcccceEEEEEECCCCCEE-EEEeEeccCCccceeEEEEeeccc-ccceeeeeeeee
Confidence 699999986433322 23333 2467777888999973 33332 2367899996644 457788887776
Q ss_pred EEEeeccCCCce-EEEEEec---CCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 513 YSVCPHHKENIQ-FIFSTAL---DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 513 ~~~~~~~~~~~~-~l~s~~~---d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
..+.+...+... ++..+.. .+.+++-++... ... ..-......+.|.|+.. ..-...+.+++.-.
T Consensus 203 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~---~~f~kk~vdi~fppea~-------~DFPVamqvs~kyg 272 (365)
T 2xzh_A 203 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD 272 (365)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC---CCCCCEEEEECCCTTCT-------TCCEEEEEEETTTT
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC---CCcccccceeeCCcccc-------CCceEEEEecccCC
Confidence 655543222222 3333332 257888888543 111 11122345555666533 22334566777777
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.++..+.-|.|++||+.++.++..-..... .|...+.+.+..-++.....|.|.-..+...
T Consensus 273 viyviTK~G~ihlyDleTgt~i~~nrIS~d--~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 273 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEEEEeCCcEEEEEEcccCcEEEEeccCCC--ceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 899999999999999999999987765433 4444444444444555557787776666554
No 313
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.10 E-value=0.44 Score=51.43 Aligned_cols=248 Identities=9% Similarity=0.081 Sum_probs=153.8
Q ss_pred EEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCC
Q 001248 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 442 (1114)
Q Consensus 363 ~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 442 (1114)
+.-.+|..+ ++|.-. ..++.|+|+++..++....+ ...|..=.|-.+. .|+..+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CC
Confidence 455678777 566654 78999999999888765321 2256667775443 455443 45
Q ss_pred eEEEEEccCCceeeeeEeeccc----cCCeeEEEecCCCCeeEEEEec------CCCCEEEEeCCCCcceeEeeccccCE
Q 001248 443 IVQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV 512 (1114)
Q Consensus 443 ~i~iwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v 512 (1114)
.|.-|++.......+ .+..| ...|..-..+++.+++ +++|= -.|.+.+|..+.+ .-+.+.||....
T Consensus 126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 201 (494)
T 1bpo_A 126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (494)
T ss_dssp EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence 699999976433222 33333 2467777888999973 33332 2467899996654 457788888777
Q ss_pred EEEeeccCCCce-EEEEEec---CCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCC
Q 001248 513 YSVCPHHKENIQ-FIFSTAL---DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN 587 (1114)
Q Consensus 513 ~~~~~~~~~~~~-~l~s~~~---d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~ 587 (1114)
..+.+...+... ++..+.. .+.+++-++... ... ..-......+.|.|+.. ..-...+.+++.-.
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~f~kk~vdv~fppe~~-------~DFPvamqvs~kyg 271 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD 271 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CCCCCEEEECCCCTTST-------TCCEEEEEEETTTT
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC---CCccceeeeeeCCcccc-------cCceeEEEecccCC
Confidence 666543322222 3333333 268888888543 111 11112244455555432 22334566777777
Q ss_pred EEEEEeCCCeEEEEECCCcceEEEeccCCCCCCcCeEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001248 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650 (1114)
Q Consensus 588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~dg~i~iwd~~~~ 650 (1114)
.++..+.-|.|++||+.++.++..-..... .|...+......-++.....|.|.-..+...
T Consensus 272 viyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 272 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred EEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 899999999999999999999987765433 4544444444445555567787777666554
No 314
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.10 E-value=0.019 Score=60.21 Aligned_cols=168 Identities=11% Similarity=0.039 Sum_probs=107.7
Q ss_pred ccCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCC---CCCCCceEEEE---ccCCcEEEEEe---
Q 001248 902 SKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT---PTAQSDTRVQF---HQDQIHFLVVH--- 971 (1114)
Q Consensus 902 ~~~V~~l~~s~d-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~i~~v~f---spdg~~l~~~~--- 971 (1114)
...--++.|.+. +.++++.-..++|..|+...+..... ...+.. .....+..+.+ .|+|+++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~----~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV----VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE----CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE----ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 333457889774 44455555899999999975432211 122110 11123578999 68888888643
Q ss_pred -----------CCeEEEEEcC---CCceeeeeecCCC-----------CcCeeEEEECCCCCEEEEEEcC-CeEEEEEcC
Q 001248 972 -----------ETQLAIFETT---KLECVKQWVPRES-----------SAPITHATFSCDSQLVYACFLD-ATVCVFSAA 1025 (1114)
Q Consensus 972 -----------d~~i~iwd~~---~~~~~~~~~~~~h-----------~~~v~~l~~s~dg~~l~s~s~D-g~I~vwd~~ 1025 (1114)
+..|..||+. +++.+....+... ......++..++|+.-++++.- +.|...+.+
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 5779999999 7877655443211 1247899999999999988888 887777765
Q ss_pred CCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1026 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
... +..+... .+... ...-+..++++| |+++|++...+|.|..+|+.+
T Consensus 168 G~~-~~~~~~~--~~~~~--~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 168 GKT-VSTFAWE--SGNGG--QRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SCC-EEEEEEC--CCCSS--SCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred CCE-Eeeeeec--CCCcc--cccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence 442 2222100 11111 112233799999 688888887799999999883
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.95 E-value=0.036 Score=59.78 Aligned_cols=108 Identities=11% Similarity=0.076 Sum_probs=80.2
Q ss_pred EEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCC----CCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccce------
Q 001248 824 FALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE------ 893 (1114)
Q Consensus 824 v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~------ 893 (1114)
.....+|..++.+.++.||.-++......+.+... -..|..+..+| +|++||..+ +..|.|-.+..+.
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence 35567888999999999999998754444444432 23688899999 999999886 4589998887321
Q ss_pred ------EEEeecc------cccCeeEEEEcCC---CCEEEEEeCCCcEEEEeCCC
Q 001248 894 ------VKSKLKG------HSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 894 ------~~~~l~~------h~~~V~~l~~s~d---~~~l~s~s~D~~v~iwd~~~ 933 (1114)
....+.- ...+|..+.|+|- +..|++-..|++|++||+..
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 0112211 2567999999995 46899999999999999986
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.94 E-value=0.097 Score=55.78 Aligned_cols=225 Identities=10% Similarity=0.039 Sum_probs=118.5
Q ss_pred CEEEEEe---CCeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCC----CcEEEEEcccce--EEEeec
Q 001248 831 SYVMSAS---GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDE--VKSKLK 899 (1114)
Q Consensus 831 ~~l~~~~---dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~d----g~v~iwd~~~~~--~~~~l~ 899 (1114)
.+++.|+ ...+.+||..+.+-. ..+........++. - ++.+++.|+.+ ..+.+||..+++ .+..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3455554 257999998875432 22222222222232 2 67788888865 578899988754 333332
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-e-
Q 001248 900 GHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H- 971 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~- 971 (1114)
.....-..+.+ ++++++.|+.+ ..+.+||..+.+= ..+...... ..-..++ .-++++++.+ .
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~----r~~~~~~-~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW---HTKPSMLTQ----RCSHGMV-EANGLIYVCGGSL 159 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE---EEECCCSSC----CBSCEEE-EETTEEEEECCEE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce---EeCCCCcCC----cceeEEE-EECCEEEEECCCC
Confidence 22222222233 67788888765 4588999887532 222111111 0112222 2366666653 2
Q ss_pred --------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeeeEEeCCCcc
Q 001248 972 --------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAY 1038 (1114)
Q Consensus 972 --------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~~ 1038 (1114)
-..+.+||..+.+-...-.... ...-.+++. -++++++.|+.+ ..+.+||..+.+-... . .
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~ 233 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-S---P 233 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-C---C
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-C---C
Confidence 3458899998875433221111 111112222 266777776654 3589999988764432 1 1
Q ss_pred cCCCCCCCCccceEEEecCCCCCeEEEEeCC-----CcEEEEeccCCC
Q 001248 1039 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1081 (1114)
Q Consensus 1039 ~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-----g~v~vW~i~~~~ 1081 (1114)
++...... +++.. ++.+++.|+.+ ..+.++|+.+.+
T Consensus 234 ~p~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 234 MPWKGVTV-----KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CSCCBSCC-----EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCCccce-----eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 22221111 22222 46788888855 568888887765
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.80 E-value=0.1 Score=55.41 Aligned_cols=227 Identities=10% Similarity=0.064 Sum_probs=118.0
Q ss_pred CCCEEEEEe-C------CeEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEEcccce-
Q 001248 829 NDSYVMSAS-G------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDE- 893 (1114)
Q Consensus 829 d~~~l~~~~-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~d-----g~v~iwd~~~~~- 893 (1114)
++..++.|+ . ..+.+||..+.+-.. .+....... +++. . ++.+++.|+.+ ..+.+||..+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 445555554 2 358899987654322 222111112 2222 3 67888888865 368999987754
Q ss_pred ----EEEeecccccCeeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC
Q 001248 894 ----VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 894 ----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
.+..+......-.++.+ ++++++.|+.++ .+.+||+.+.+= ..+....... .-..++ .-++
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~r----~~~~~~-~~~~ 160 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW---SMLGDMQTAR----EGAGLV-VASG 160 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE---EEEEECSSCC----BSCEEE-EETT
T ss_pred CeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE---EECCCCCCCc----ccceEE-EECC
Confidence 33333222222222223 677777777543 588888877432 2221111110 111222 2366
Q ss_pred cEEEEE-eC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeeeEEe
Q 001248 965 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 965 ~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~~~~ 1033 (1114)
+.++.+ .+ ..+.+||..+.+-...-........-..+. -++++++.|+.+ ..+.+||..+.+-...-
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 238 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT 238 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence 666663 32 468899988775443321111111112222 267777777764 46899999988755332
Q ss_pred CCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-----CcEEEEeccCCC
Q 001248 1034 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1081 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-----g~v~vW~i~~~~ 1081 (1114)
. ++..... . +++.. ++++++.|+.+ ..+.++|+.+.+
T Consensus 239 ~----~p~~r~~---~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 239 S----MTTPRCY---V--GATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp C----CSSCCBS---C--EEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred C----CCCcccc---e--eEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 1 2222111 1 22222 46788888766 357788887754
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.73 E-value=0.19 Score=53.38 Aligned_cols=230 Identities=12% Similarity=0.124 Sum_probs=118.9
Q ss_pred CCCEEEEEe-C----CeEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEcccce--E
Q 001248 829 NDSYVMSAS-G----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE--V 894 (1114)
Q Consensus 829 d~~~l~~~~-d----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~dg-----~v~iwd~~~~~--~ 894 (1114)
++..++.|+ + ..+..||..+.+-.. .+....... +++. - ++.+++.|+.++ .+.+||..+.+ .
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence 344555554 2 458888887654222 122111111 2222 2 678888888653 58899988754 3
Q ss_pred EEeecccccCeeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEE
Q 001248 895 KSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV 969 (1114)
Q Consensus 895 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~ 969 (1114)
+..+......-..+.+ ++++++.|+.++ .+.+||+.+.+= ..+...... ..-..++. -+++.++.
T Consensus 92 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~----r~~~~~~~-~~~~iyv~ 161 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW---FHVAPMNTR----RSSVGVGV-VGGLLYAV 161 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEE---EEECCCSSC----CBSCEEEE-ETTEEEEE
T ss_pred CCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeE---eecCCCCCc----ccCceEEE-ECCEEEEE
Confidence 3222222222222233 677888887664 477888876432 222111111 11122222 35666665
Q ss_pred E-e-------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeeeEEeCCC
Q 001248 970 V-H-------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPS 1036 (1114)
Q Consensus 970 ~-~-------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~ 1036 (1114)
+ . ...+.+||..+.+-...-........-..+. -++++++.|+.+ ..+.+||..+.+-...-.
T Consensus 162 GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-- 237 (302)
T 2xn4_A 162 GGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD-- 237 (302)
T ss_dssp CCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC--
T ss_pred eCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC--
Confidence 3 2 2358899998775433211111111112222 267777777765 369999998876543221
Q ss_pred cccCCCCCCCCccceEEEecCCCCCeEEEEeCCC-----cEEEEeccCCCCcccC
Q 001248 1037 AYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGV 1086 (1114)
Q Consensus 1037 ~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg-----~v~vW~i~~~~~~~~~ 1086 (1114)
++...... .++.. ++.+++.|+.++ .+.+||+.+.+ |..
T Consensus 238 --~~~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 238 --MNMCRRNA-----GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp --CSSCCBSC-----EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred --CCCccccC-----eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 22221111 22222 467888888664 48889988765 554
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.59 E-value=0.21 Score=52.87 Aligned_cols=189 Identities=9% Similarity=0.043 Sum_probs=100.2
Q ss_pred eeCCCEEEEEe-C-----CeEEEEEcCCCc---c--ccccCCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEcc
Q 001248 827 SKNDSYVMSAS-G-----GKISLFNMMTFK---T--MATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVR 890 (1114)
Q Consensus 827 s~d~~~l~~~~-d-----g~i~iwd~~~~~---~--~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg-----~v~iwd~~ 890 (1114)
..+++.++.|+ + +.+.+||..+.+ - +..+........++. . ++++++.|+.++ .+.+||+.
T Consensus 60 ~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~d~~ 136 (301)
T 2vpj_A 60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--L-GDMIYVSGGFDGSRRHTSMERYDPN 136 (301)
T ss_dssp EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--E-TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--E-CCEEEEEcccCCCcccceEEEEcCC
Confidence 34677777776 3 458999988755 2 222222112222222 2 678888887543 68899987
Q ss_pred cce--EEEeecccccCeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 891 VDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 891 ~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
+.+ .+..+......-.++.+ ++++++.|+.+ ..+.+||+.+.+= ..+...... ..-..++ .-+
T Consensus 137 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~----r~~~~~~-~~~ 206 (301)
T 2vpj_A 137 IDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW---TNVTPMATK----RSGAGVA-LLN 206 (301)
T ss_dssp TTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE---EEECCCSSC----CBSCEEE-EET
T ss_pred CCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE---EeCCCCCcc----cccceEE-EEC
Confidence 753 33333222222222222 67788887765 4588999877432 222111110 1111222 235
Q ss_pred CcEEEEE-eC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeee
Q 001248 964 QIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1030 (1114)
Q Consensus 964 g~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~ 1030 (1114)
++.++.+ .+ ..+.+||+.+.+-...-...........+. -++++++.|+.+ ..|.+||..+.+-.
T Consensus 207 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 207 DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 6666664 32 468999998776443322111111112222 267777777765 35888898876643
No 320
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.54 E-value=0.25 Score=52.60 Aligned_cols=228 Identities=12% Similarity=0.075 Sum_probs=117.8
Q ss_pred eCCCEEEEEe-C----CeEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeC----C-----CcEEEEEccc
Q 001248 828 KNDSYVMSAS-G----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMD----D-----SSIQIYNVRV 891 (1114)
Q Consensus 828 ~d~~~l~~~~-d----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~----d-----g~v~iwd~~~ 891 (1114)
-++..++.|+ + ..+.+||..+.+-.. .+....... +++. - ++.+++.|+. + ..+.+||..+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 4566666665 2 468899987654322 122111112 2222 2 6778888876 2 3688999877
Q ss_pred ce--EEEeecccccCeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC
Q 001248 892 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 892 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
.+ .+..+......-..+.+ ++++++.|+.+ ..+.+||..+.+= ..+....... .-..++.. ++
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r----~~~~~~~~-~~ 169 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW---HLVAPMLTRR----IGVGVAVL-NR 169 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE---EECCCCSSCC----BSCEEEEE-TT
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE---eECCCCCccc----cceEEEEE-CC
Confidence 54 22222221222222333 67777777654 3588899877432 2121111110 11122222 56
Q ss_pred cEEEEE-eC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeeeEEe
Q 001248 965 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRI 1033 (1114)
Q Consensus 965 ~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~~~~ 1033 (1114)
++++.+ .+ ..+.+||+.+.+-...-........-..+.+ ++++++.|+.+ ..+.+||+.+.+-...
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~- 246 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV- 246 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-
Confidence 666663 32 4688999887654332111111111122222 67777777665 4699999988765432
Q ss_pred CCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC-----CcEEEEeccCCC
Q 001248 1034 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1081 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D-----g~v~vW~i~~~~ 1081 (1114)
. .++..... . +++.. ++.+++.|+.+ ..+.++|+.+.+
T Consensus 247 ~---~~p~~r~~---~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 247 A---PMKHRRSA---L--GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp C---CCSSCCBS---C--EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred C---CCCCCccc---e--EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1 12222111 1 22222 46788888755 457788887755
No 321
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.46 E-value=0.36 Score=51.83 Aligned_cols=188 Identities=14% Similarity=0.084 Sum_probs=105.3
Q ss_pred eEEEEEecCCCcEEEEE------------eCCCcEEEEEccc--ceEE-Eeecc-----cccCeeEEEEcC--CCC-EEE
Q 001248 862 ATFLAFHPQDNNIIAIG------------MDDSSIQIYNVRV--DEVK-SKLKG-----HSKRITGLAFSH--ALN-VLV 918 (1114)
Q Consensus 862 i~~l~~sp~d~~~la~g------------~~dg~v~iwd~~~--~~~~-~~l~~-----h~~~V~~l~~s~--d~~-~l~ 918 (1114)
...++..| +|..+++. ..+|.|.++|..+ ++.. ..+.+ ..-....+.+.+ ++. +|+
T Consensus 52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44556666 66444443 2689999999873 2211 12222 233566777755 454 344
Q ss_pred EE-eC--CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe----C--------------CeEEE
Q 001248 919 SS-GA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----E--------------TQLAI 977 (1114)
Q Consensus 919 s~-s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~----d--------------~~i~i 977 (1114)
.+ .. +.+|.+|+++..... ...+....+.. ......+++.++|.+.++.. | +.|.-
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~--~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKL--LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTE-EEEEEEECCTT--CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCE-EEEEeccccCC--CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 33 33 567888888764322 22333333322 24678999999999888742 1 33444
Q ss_pred EEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE-cCCeEEEEEcC-CCeeeE--EeCCCcccCCCCCCCCccceEE
Q 001248 978 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAA-NLKLRC--RINPSAYLPAGVSSSNVHPLVI 1053 (1114)
Q Consensus 978 wd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s-~Dg~I~vwd~~-~~~~~~--~~~~~~~~~~~~~~~~v~~~~~ 1053 (1114)
+|. ++.. ... ..-...+.++||||+++|+.+. ..+.|+.|++. ++++.. .+. .... |=.+
T Consensus 208 ~d~--~~~~-~~~--~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~----------PDGi 271 (355)
T 3sre_A 208 YSP--NDVR-VVA--EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTL----------VDNI 271 (355)
T ss_dssp ECT--TCCE-EEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSE----------EEEE
T ss_pred EEC--CeEE-Eee--cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCC----------CceE
Confidence 444 3322 211 1134578999999999887665 46789999986 343321 221 1112 2246
Q ss_pred EecCCCCCeEEEEeCC
Q 001248 1054 AAHPQEPNEFALGLSD 1069 (1114)
Q Consensus 1054 ~~~~~d~~~l~s~~~D 1069 (1114)
+.++++|++.+++..+
T Consensus 272 ~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 272 SVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EECTTTCCEEEEEESC
T ss_pred EEeCCCCcEEEEecCC
Confidence 6766337777766544
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.39 E-value=0.57 Score=52.71 Aligned_cols=103 Identities=15% Similarity=0.113 Sum_probs=62.4
Q ss_pred CccEEEEeeCCCEEEEEeC-CeEEEEEcCCCccc--cccCC------CCCCeEEEEEecC---CCcEEEEEeC-------
Q 001248 820 AVPCFALSKNDSYVMSASG-GKISLFNMMTFKTM--ATFMP------PPPAATFLAFHPQ---DNNIIAIGMD------- 880 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~d-g~i~iwd~~~~~~~--~~~~~------~~~~i~~l~~sp~---d~~~la~g~~------- 880 (1114)
....++|.|||+++++-.. +.|++++..++... ..+.. .......|+|+|+ ++.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4679999999998887765 57998886554432 22221 2456789999994 4444444332
Q ss_pred -----CCcEEEEEcccc-------eEEE-eecc-cccCeeEEEEcCCCCEEEEEeC
Q 001248 881 -----DSSIQIYNVRVD-------EVKS-KLKG-HSKRITGLAFSHALNVLVSSGA 922 (1114)
Q Consensus 881 -----dg~v~iwd~~~~-------~~~~-~l~~-h~~~V~~l~~s~d~~~l~s~s~ 922 (1114)
...|.-|++..+ +.+. .+.. .......|+|.|||.+.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665421 1121 1221 1123578999999998887654
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.38 E-value=0.54 Score=50.09 Aligned_cols=223 Identities=11% Similarity=0.089 Sum_probs=114.3
Q ss_pred CCeEEEEEcCCCcccc-ccCCCCCCeEEEEEecCCCcEEEEEeC-----C------CcEEEEEcccce--EEEeeccccc
Q 001248 838 GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD-----D------SSIQIYNVRVDE--VKSKLKGHSK 903 (1114)
Q Consensus 838 dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~la~g~~-----d------g~v~iwd~~~~~--~~~~l~~h~~ 903 (1114)
...+.+||..+.+-.. .+..........+... ++.+++.|+. . ..+.+||..+++ .+..+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3678999988765432 1222222333333344 7788888873 1 127888887754 2222221111
Q ss_pred CeeEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-e-C-
Q 001248 904 RITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E- 972 (1114)
Q Consensus 904 ~V~~l~~s~d~~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~-d- 972 (1114)
.-..+.+ ++++++.|+.+ ..+.+||..+.+ +..+...... ..-.+++ .-+++.++.+ . +
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~---W~~~~~~p~~----r~~~~~~-~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK---WGESDPLPYV----VYGHTVL-SHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE---EEECCCCSSC----CBSCEEE-EETTEEEEECCBCTT
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc---EeECCCCCCc----ccceeEE-EECCEEEEEeCCCCC
Confidence 1122222 56777777743 458899988743 2222111111 0112222 3456666664 3 2
Q ss_pred ----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCCeeeEEeCCCcccCCCC
Q 001248 973 ----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSAYLPAGV 1043 (1114)
Q Consensus 973 ----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg-----~I~vwd~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
..+.+||..+.+-...-.... ...-.+++ .-++++++.|+.++ .+.+||..+.+-...-. ++...
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r 234 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQER 234 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSCC
T ss_pred CcccceEEEEeCCCCeEEECCCCCC-chhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCcc
Confidence 368999988775433221111 11111222 22677777777654 58899998876543321 22221
Q ss_pred CCCCccceEEEecCCCCCeEEEEeCCC--------------cEEEEeccCCCCcccC
Q 001248 1044 SSSNVHPLVIAAHPQEPNEFALGLSDG--------------GVHVFEPLESEGKWGV 1086 (1114)
Q Consensus 1044 ~~~~v~~~~~~~~~~d~~~l~s~~~Dg--------------~v~vW~i~~~~~~~~~ 1086 (1114)
..+ +++.. ++.+++.|+.++ .+.++|+.+.+ |..
T Consensus 235 ~~~-----~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~ 282 (315)
T 4asc_A 235 SSL-----SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEG 282 (315)
T ss_dssp BSC-----EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEE
T ss_pred cce-----eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhh
Confidence 111 22222 467888887642 36677777755 544
No 324
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.35 E-value=0.17 Score=63.02 Aligned_cols=237 Identities=14% Similarity=0.137 Sum_probs=143.2
Q ss_pred ccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ceEEEeec
Q 001248 821 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLK 899 (1114)
Q Consensus 821 v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~ 899 (1114)
..+..++|..+.+|.-...++.|||+.+...+....-. ..|.-=.|-. .+.|+..+ +..|+-|++.. ..+...+.
T Consensus 68 AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fd 143 (1630)
T 1xi4_A 68 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD 143 (1630)
T ss_pred chhhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHh
Confidence 34566788888888877889999999988777766533 3566666653 45666555 56899999964 23444444
Q ss_pred cc----ccCeeEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEE--cc-CCc
Q 001248 900 GH----SKRITGLAFSHALNVLVSSG-------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF--HQ-DQI 965 (1114)
Q Consensus 900 ~h----~~~V~~l~~s~d~~~l~s~s-------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~f--sp-dg~ 965 (1114)
-| ...|..-..+++.+|++..| -.|.+.+|.++.+.. +...||.... ..+.+ .+ ...
T Consensus 144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s------Q~iegha~~F---~~~~~~~~~~~~~ 214 (1630)
T 1xi4_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS------QPIEGHAASF---AQFKMEGNAEEST 214 (1630)
T ss_pred cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc------hhhhHhHhhh---heeccCCCCCCce
Confidence 44 35677778889999987544 247889999887432 3333432100 00000 11 122
Q ss_pred EEEEEe----CCeEEEEEcCCC---c------eeeeee-cCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeE
Q 001248 966 HFLVVH----ETQLAIFETTKL---E------CVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC 1031 (1114)
Q Consensus 966 ~l~~~~----d~~i~iwd~~~~---~------~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~ 1031 (1114)
.++.+. .+++.|-++... . .+..+. .+.-.+-..++..|+.-..+...+.-|.|.+||+.||..+.
T Consensus 215 l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred EEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 222221 257778777432 1 111111 12224456678888888889889999999999999999987
Q ss_pred EeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCC
Q 001248 1032 RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1081 (1114)
Q Consensus 1032 ~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~ 1081 (1114)
+-+.+ ...+. ..+.....+. ++.....|.|.--.+.+..
T Consensus 295 ~~ris--------~~~iF--~~~~~~~~~g-~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 295 MNRIS--------GETIF--VTAPHEATAG-IIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred hcccc--------CCceE--EeccCCCCCc-eEEEcCCceEEEEEEccch
Confidence 65411 11133 2222222233 4444477877777776655
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.25 E-value=1.6 Score=46.68 Aligned_cols=201 Identities=12% Similarity=0.086 Sum_probs=109.0
Q ss_pred CCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccc--ccc----CCCCCCeEEEEEecC---CCcEEEEE--eCCCcEEE
Q 001248 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATF----MPPPPAATFLAFHPQ---DNNIIAIG--MDDSSIQI 886 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~--~~~----~~~~~~i~~l~~sp~---d~~~la~g--~~dg~v~i 886 (1114)
.....++|.|||+++++-. .|.|++++..+++.. ..+ .........++|+|+ ++.+.++- ..++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 4567999999999888887 899999987655431 111 223456889999993 35444432 24456666
Q ss_pred EEcccc----------eEE-Eeec---ccccCeeEEEEcCCCCEEEEEeC-------------CCcEEEEeCCCCccccc
Q 001248 887 YNVRVD----------EVK-SKLK---GHSKRITGLAFSHALNVLVSSGA-------------DSQLCVWSSDGWEKQKN 939 (1114)
Q Consensus 887 wd~~~~----------~~~-~~l~---~h~~~V~~l~~s~d~~~l~s~s~-------------D~~v~iwd~~~~~~~~~ 939 (1114)
|.+..+ +.+ ..+. .|. -..|+|.|||.+.++.+. .|.|.-.+.+..-....
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 665431 111 1222 243 357999999988887653 24444444443100000
Q ss_pred ---cccccCCCCCCCCCCceEEEEccCCcEEEE--EeCCeEEEEEcCCCcee------------------eeeecCCCCc
Q 001248 940 ---RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECV------------------KQWVPRESSA 996 (1114)
Q Consensus 940 ---~~~~~~~~~~~~~~~i~~v~fspdg~~l~~--~~d~~i~iwd~~~~~~~------------------~~~~~~~h~~ 996 (1114)
.......++. ....++|.|+|.+.++ +.++.-.|--+..+.-. ..|. .+..
T Consensus 190 Pf~~~~i~a~G~R----Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~--~~~~ 263 (347)
T 3das_A 190 PFPGSPVYSYGHR----NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWS--TDEA 263 (347)
T ss_dssp SSTTCCEEEBCCS----BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEEC--TTTC
T ss_pred CCCCCeEEeeCCC----CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecC--CCCC
Confidence 0000111221 4578999999988777 34443333333333211 1111 1113
Q ss_pred CeeEEEECCCCCEEEEEEcCCeEEEEEcCCCe
Q 001248 997 PITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1114)
Q Consensus 997 ~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~ 1028 (1114)
....++|. +|.+++..-..+.|....+....
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~ 294 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTA 294 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTE
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCc
Confidence 55667775 45555544445556655665443
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.17 E-value=1.9 Score=46.63 Aligned_cols=114 Identities=12% Similarity=0.163 Sum_probs=60.7
Q ss_pred CCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC---CCe
Q 001248 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSL 434 (1114)
Q Consensus 358 ~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~ 434 (1114)
-...+.|+|.|||++|++ +...|.|++++.. +.... .+ -+ .. .+..........|+|+|| +.+
T Consensus 17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~--~~-------~~-~v~~~g~~g~~gia~~pdf~~~g~ 82 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PL--SG-------VP-DVWAHGQGGLLDVVLAPDFAQSRR 82 (353)
T ss_dssp ESSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CC--BS-------CC-CCCCSTTCSEEEEEECTTHHHHCE
T ss_pred CCCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Ee--cC-------Cc-ccccCCCCCceeEEECCCCCCCCE
Confidence 345799999999995344 4567999999854 32110 00 00 00 012223446789999996 444
Q ss_pred EEEE-eC-------CCeEEEEEccCCc----eeeeeE-eec---cccCCeeEEEecCCCCeeEEEEec
Q 001248 435 FGVA-YS-------RHIVQIYSYHGGD----EVRQHL-EID---AHVGGVNDIAFSHPNKQLCVITCG 486 (1114)
Q Consensus 435 las~-~~-------dg~i~iwd~~~~~----~~~~~~-~l~---~h~~~V~~v~~s~d~~~~~l~s~~ 486 (1114)
|..+ .. ...|..|++..+. ..+.+. .+. .....-..|+|.|||. +++.+|.
T Consensus 83 lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd 149 (353)
T 2g8s_A 83 IWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGE 149 (353)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECC
T ss_pred EEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECC
Confidence 4444 22 2356667765431 111111 111 1111235799999995 3454443
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.13 E-value=0.33 Score=51.52 Aligned_cols=188 Identities=10% Similarity=0.040 Sum_probs=100.2
Q ss_pred eCCCEEEEEe-C----CeEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeCC------CcEEEEEcccce-
Q 001248 828 KNDSYVMSAS-G----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDE- 893 (1114)
Q Consensus 828 ~d~~~l~~~~-d----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~d------g~v~iwd~~~~~- 893 (1114)
-+++.++.|+ + ..+.+||..+.+-.. .+........++.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 4777777776 3 568899988754322 22211122222222 67788888865 468999988754
Q ss_pred -EEEeecccccCeeEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 894 -VKSKLKGHSKRITGLAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 894 -~~~~l~~h~~~V~~l~~s~d~~~l~s~s~---------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
.+..+......-.++.+ ++++++.|+. -..+.+||+.+.+ +..+...... ..-..++. -+
T Consensus 131 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~----r~~~~~~~-~~ 200 (306)
T 3ii7_A 131 HTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET---WTELCPMIEA----RKNHGLVF-VK 200 (306)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTE---EEEECCCSSC----CBSCEEEE-ET
T ss_pred EeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCe---EEECCCccch----hhcceEEE-EC
Confidence 22222211111122222 6677777764 3458899988753 2222211110 01122222 26
Q ss_pred CcEEEEE-eC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeee
Q 001248 964 QIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1030 (1114)
Q Consensus 964 g~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~ 1030 (1114)
+++++.+ .+ ..+.+||..+.+-...-...........+.+ ++++++.|+.+ ..+.+||..+.+-.
T Consensus 201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 6666663 22 4688999987754332111111112222333 67777888754 46899999887644
No 328
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.012 Score=62.66 Aligned_cols=200 Identities=7% Similarity=0.026 Sum_probs=109.1
Q ss_pred CcEEEEEeCCCcEEEEEcccceEEEeeccc-ccCeeEEE---EcCCCCEEEEE-eCCCcEEEEeCCCCccccccccccCC
Q 001248 872 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLA---FSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPT 946 (1114)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~---~s~d~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~ 946 (1114)
+.++++++.||.|+-+|..+|+.+.++... ..++.... ...++..++.. +.||.|..++..++.......+....
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 347888999999999999999999888654 12222111 00122333333 57999998888776432111111000
Q ss_pred CCCCCCCCceEEEE------------ccCCcEEEEEeCCeEEEEEcCCCceeeeeecCCCCcC-----eeEEEEC-----
Q 001248 947 GRTPTAQSDTRVQF------------HQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP-----ITHATFS----- 1004 (1114)
Q Consensus 947 ~~~~~~~~i~~v~f------------spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~-----v~~l~~s----- 1004 (1114)
.. .-+.. +.+|..++.+.++.+...|..+|+.+..+....-... ..|....
T Consensus 90 ~~-------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d 162 (339)
T 2be1_A 90 ST-------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQ 162 (339)
T ss_dssp TT-------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------------
T ss_pred ec-------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccc
Confidence 00 01111 2455545558999999999999999988864321111 1111111
Q ss_pred CCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccCCCCcc
Q 001248 1005 CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1084 (1114)
Q Consensus 1005 ~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~~~~~~ 1084 (1114)
..+..|+.+..+..+.+.+ .+|+ +..+....+.+... ...+. ..-..+. |+.+ +.++.||.|...|..+|+..|
T Consensus 163 ~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 163 ECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp --CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred cCCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 1245777788788888777 5564 32222111111110 00000 0000111 4555 557889999999999999888
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.08 E-value=0.023 Score=55.30 Aligned_cols=150 Identities=12% Similarity=0.035 Sum_probs=86.9
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEEEEcccceE------EEee--cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001248 861 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV------KSKL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932 (1114)
Q Consensus 861 ~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~------~~~l--~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~ 932 (1114)
.++.++|+| ++.+.|+ .+|.++-.+..+... -..+ .+-.. -.++.|.++|.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 577999999 8988777 678877777644211 0111 01111 378999999998888 56988777754
Q ss_pred CCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCcee-----eeeecCCCCcCeeEEEECCCC
Q 001248 933 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV-----KQWVPRESSAPITHATFSCDS 1007 (1114)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~-----~~~~~~~h~~~v~~l~~s~dg 1007 (1114)
+.....+......-+ ...-..+..+.|.|+|.+.++. |+.+.-....+.... ..............+.|+++|
T Consensus 116 ~~~~~~Wl~~a~~vg-~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVG-SGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEE-CSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEec-cCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 433222211100000 0001256899999999999999 888654444322211 111111223344557788888
Q ss_pred CEEEEEEcCCeEE
Q 001248 1008 QLVYACFLDATVC 1020 (1114)
Q Consensus 1008 ~~l~s~s~Dg~I~ 1020 (1114)
.+.++. +|.++
T Consensus 194 ~l~~v~--~g~~Y 204 (236)
T 1tl2_A 194 TLFGVQ--GGKFY 204 (236)
T ss_dssp CEEEEE--TTEEE
T ss_pred cEEEEe--CCeEE
Confidence 876655 66443
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.85 E-value=0.67 Score=50.43 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=50.3
Q ss_pred eeCCCEEEEEe--CCeEEEEEcCC--C--ccccccCCCCCCeEEEEEecCCCcEEEEEeC-C---------CcEEEEEcc
Q 001248 827 SKNDSYVMSAS--GGKISLFNMMT--F--KTMATFMPPPPAATFLAFHPQDNNIIAIGMD-D---------SSIQIYNVR 890 (1114)
Q Consensus 827 s~d~~~l~~~~--dg~i~iwd~~~--~--~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~-d---------g~v~iwd~~ 890 (1114)
.-+++.++.|+ ...+.+||..+ . ..+..+......-.+++.. ++++++.|+. + ..+.+||..
T Consensus 17 ~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 17 IDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp EETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred EECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 33777777776 46799999863 2 2222222111111222222 6778888876 2 468999988
Q ss_pred cce--EEEeecccccCeeEEEEcCCCCEEEEEeCC
Q 001248 891 VDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD 923 (1114)
Q Consensus 891 ~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D 923 (1114)
+.+ .+..+. ........+...++++++.|+.+
T Consensus 95 ~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 95 TNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCC
T ss_pred CCcEEECCCCC-CcccccceEEEECCEEEEEeCcC
Confidence 754 222222 01111121222577888888865
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.81 E-value=0.12 Score=50.32 Aligned_cols=148 Identities=12% Similarity=0.004 Sum_probs=85.3
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCe--------EEEEEecCCCcEEEEEeCCCcEEEEEccc
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAA--------TFLAFHPQDNNIIAIGMDDSSIQIYNVRV 891 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i--------~~l~~sp~d~~~la~g~~dg~v~iwd~~~ 891 (1114)
.+..++|+|||.+.++ .+|.+.-.+..+.....-+. ....| .++.|.| +|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence 5679999999998888 88887777664432221111 12223 7899999 8888887 569998887643
Q ss_pred ceEE------Eee-cccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC
Q 001248 892 DEVK------SKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 892 ~~~~------~~l-~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
...- .++ .+-=..+..|.|.|+|.+.+.. |+.+.-+...+............-+.. ....-..+.|.++|
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~-g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQG-GWDTFKFLFFSSVG 193 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESS-SGGGEEEEEECTTS
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccC-CcceEEEEEECCCC
Confidence 1110 011 1111457899999999888777 776543332221111110000000000 00123556799999
Q ss_pred cEEEEEeCCeEE
Q 001248 965 IHFLVVHETQLA 976 (1114)
Q Consensus 965 ~~l~~~~d~~i~ 976 (1114)
.+.++. ++.+.
T Consensus 194 ~l~~v~-~g~~Y 204 (236)
T 1tl2_A 194 TLFGVQ-GGKFY 204 (236)
T ss_dssp CEEEEE-TTEEE
T ss_pred cEEEEe-CCeEE
Confidence 988887 66444
No 332
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.78 E-value=0.69 Score=48.84 Aligned_cols=188 Identities=12% Similarity=0.102 Sum_probs=98.3
Q ss_pred eCCCEEEEEe-C-----CeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCCC-----cEEEEEcccce-
Q 001248 828 KNDSYVMSAS-G-----GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE- 893 (1114)
Q Consensus 828 ~d~~~l~~~~-d-----g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~dg-----~v~iwd~~~~~- 893 (1114)
-+++.++.|+ + ..+.+||..+.+-. ..+........++.+ ++++++.|+.++ .+.+||+.+.+
T Consensus 60 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 60 MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136 (302)
T ss_dssp ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence 3777777776 3 35889998765432 222211122222222 677888887654 57888887654
Q ss_pred -EEEeecccccCeeEEEEcCCCCEEEEEeCC-------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCc
Q 001248 894 -VKSKLKGHSKRITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI 965 (1114)
Q Consensus 894 -~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~ 965 (1114)
.+..+......-.++.+ ++++++.|+.+ ..+.+||+.+.+= ..+...... ..-.+++ .-+++
T Consensus 137 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~----r~~~~~~-~~~~~ 206 (302)
T 2xn4_A 137 FHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW---TYIAEMSTR----RSGAGVG-VLNNL 206 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE---EEECCCSSC----CBSCEEE-EETTE
T ss_pred eecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE---EECCCCccc----cccccEE-EECCE
Confidence 33222222222222222 66777777653 3588999887432 222111111 0112222 23566
Q ss_pred EEEEE-eC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC-----eEEEEEcCCCeee
Q 001248 966 HFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLR 1030 (1114)
Q Consensus 966 ~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg-----~I~vwd~~~~~~~ 1030 (1114)
+++.+ .+ ..+.+||..+.+-...-.... ...-.+++ .-++++++.|+.++ .|.+||..+.+-.
T Consensus 207 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 207 LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM-CRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC-ccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 66664 32 468999998775433221111 11111122 23677777777654 4899999887644
No 333
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.75 E-value=0.13 Score=55.64 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=79.3
Q ss_pred CCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEE-------eeeeeeccCCCCcccccccccCCCCCeeEEEEcC-
Q 001248 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-------RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP- 430 (1114)
Q Consensus 359 ~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~sp- 430 (1114)
+.|..+..||+|++ ||.- .+.+|.|-.+..+..... ...+.|.++. .......+|..+.|+|
T Consensus 66 ~~i~qlvlSpsG~l-LAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl 135 (452)
T 3pbp_A 66 DDTFHVISSTSGDL-LCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPK 135 (452)
T ss_dssp CTTCEEEECTTSSE-EEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTT
T ss_pred CceeEEEECCCCCE-EEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEeccc
Confidence 36889999999996 5554 356899988874432111 0011122211 0112357899999999
Q ss_pred --CCCeEEEEeCCCeEEEEEccCCceeee-------eEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEE
Q 001248 431 --DGSLFGVAYSRHIVQIYSYHGGDEVRQ-------HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW 494 (1114)
Q Consensus 431 --dg~~las~~~dg~i~iwd~~~~~~~~~-------~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iw 494 (1114)
.|..|++-..|+.|++||+........ ...+..+...|.+++|..++-.+++++....|.|+-.
T Consensus 136 ~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 136 SYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp BGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 566899999999999999986331111 0112223356888899887776666666666766543
No 334
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.75 E-value=0.0097 Score=47.43 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc--HHHHHHHhhccCHHHHHHHhcc
Q 001248 5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKYFEDEVHNGNWDDVEKYLSG 59 (1114)
Q Consensus 5 ~~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~--~~~~~~~i~~g~w~~~~~~~~~ 59 (1114)
++|+.+=|++||..+||.+++.+|.+|.++..+ ...-.+-+++-+|..++++-++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK 66 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 66 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence 568999999999999999999999999998875 1223456677777766555443
No 335
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.64 E-value=0.75 Score=49.37 Aligned_cols=189 Identities=12% Similarity=0.051 Sum_probs=93.5
Q ss_pred CeeEEEEcCCCCeEEEEe------------CCCeEEEEEccCCceeeeeEeecc-----ccCCeeEEEecC--CCCeeEE
Q 001248 422 SVNRVIWSPDGSLFGVAY------------SRHIVQIYSYHGGDEVRQHLEIDA-----HVGGVNDIAFSH--PNKQLCV 482 (1114)
Q Consensus 422 ~V~~l~~spdg~~las~~------------~dg~i~iwd~~~~~~~~~~~~l~~-----h~~~V~~v~~s~--d~~~~~l 482 (1114)
..-.++..|+|..+++++ .+|.|.++|.++.........+.+ .......+.+.+ ++...++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 456677889886666652 689999999974311111112332 234566777755 4543233
Q ss_pred EEecC--CCCEEEEeCCCCcce----eEeecc-ccCEEEEeeccCCCceEEEEEec---C------------CeEEEEEc
Q 001248 483 ITCGD--DKTIKVWDATNGAKQ----YIFEGH-EAPVYSVCPHHKENIQFIFSTAL---D------------GKIKAWLY 540 (1114)
Q Consensus 483 ~s~~~--d~~i~iwd~~~~~~~----~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~---d------------~~i~~wd~ 540 (1114)
+.-.. +.+|.+|++..+... .++.+. -...+.+.+. ++|.+.++... | ..=.+|.+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 33222 567888887654322 233322 1345666643 34555555431 1 11122222
Q ss_pred CCCCCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEe-CCCeEEEEECCC-cce--EEEeccCC
Q 001248 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDS-VQL--LTSIDADG 616 (1114)
Q Consensus 541 ~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~ 616 (1114)
+..+ ...+. ..-...+-++|+|+++.++.+. ..+.|+.|++.. ++. ...+...
T Consensus 209 d~~~-~~~~~---------------------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~- 265 (355)
T 3sre_A 209 SPND-VRVVA---------------------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD- 265 (355)
T ss_dssp CTTC-CEEEE---------------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS-
T ss_pred ECCe-EEEee---------------------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCC-
Confidence 2111 10000 0011234466666666666554 578899998753 322 1223211
Q ss_pred CCCCcCeEEEcC-CCCEEEEEe
Q 001248 617 GLPASPRIRFNK-DGCLLAVST 637 (1114)
Q Consensus 617 ~~~~v~~~~~s~-d~~~l~~~~ 637 (1114)
...-.+++.+ +|++.+++.
T Consensus 266 --g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 266 --TLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp --SEEEEEEECTTTCCEEEEEE
T ss_pred --CCCceEEEeCCCCcEEEEec
Confidence 2245677777 477766554
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.64 E-value=1.3 Score=47.16 Aligned_cols=142 Identities=4% Similarity=-0.073 Sum_probs=69.9
Q ss_pred EEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeC-----C------
Q 001248 373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-----R------ 441 (1114)
Q Consensus 373 ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-----d------ 441 (1114)
|++.|+ ..+.+||..+++-.. .. +........+.+...+++.++.|+. .
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~-----------------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 66 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-AS-----------------LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS 66 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EE-----------------CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred EEEEcC--CceEEECCCCCeEec-CC-----------------CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence 566666 679999998876322 10 1111122233344458888888873 1
Q ss_pred CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCC--------CCEEEEeCCCCccee--EeeccccC
Q 001248 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQY--IFEGHEAP 511 (1114)
Q Consensus 442 g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d--------~~i~iwd~~~~~~~~--~~~~h~~~ 511 (1114)
..+.+||..+++- .....+......-..+.+ +++ +++.|+.+ ..+.+||..+.+-.. .+......
T Consensus 67 ~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 141 (315)
T 4asc_A 67 AYFLQFDHLDSEW-LGMPPLPSPRCLFGLGEA--LNS--IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG 141 (315)
T ss_dssp EEEEEEETTTTEE-EECCCBSSCEESCEEEEE--TTE--EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred cceEEecCCCCeE-EECCCCCcchhceeEEEE--CCE--EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Confidence 1277888887652 221122111111112222 444 55666632 458999988764221 11111111
Q ss_pred EEEEeeccCCCceEEEEEec-C-----CeEEEEEcCCC
Q 001248 512 VYSVCPHHKENIQFIFSTAL-D-----GKIKAWLYDNL 543 (1114)
Q Consensus 512 v~~~~~~~~~~~~~l~s~~~-d-----~~i~~wd~~~~ 543 (1114)
-..+. -++.+++.|+. + ..+.+||..+.
T Consensus 142 ~~~~~----~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 142 HTVLS----HMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp CEEEE----ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred eeEEE----ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 11111 13356677765 2 35777777653
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.41 E-value=1.5 Score=47.60 Aligned_cols=198 Identities=8% Similarity=-0.056 Sum_probs=96.1
Q ss_pred eCCCEEEEEeC-----------CeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCC-------------
Q 001248 828 KNDSYVMSASG-----------GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD------------- 881 (1114)
Q Consensus 828 ~d~~~l~~~~d-----------g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~d------------- 881 (1114)
-+++.++.|+. +.+.+||..+.+-. ..+......-.+++. . ++++++.|+.+
T Consensus 64 ~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~ 141 (357)
T 2uvk_A 64 IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNE 141 (357)
T ss_dssp ETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHH
T ss_pred ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhh
Confidence 36666666542 34889998765432 222211111122222 3 78888888865
Q ss_pred --------------------------CcEEEEEcccc--eEEEeecccccCeeEEEEcCCCCEEEEEeCC------CcEE
Q 001248 882 --------------------------SSIQIYNVRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLC 927 (1114)
Q Consensus 882 --------------------------g~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------~~v~ 927 (1114)
..+.+||..+. +.+..+......-.+++.. ++++++.|+.+ ..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 142 AGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp HTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEE
T ss_pred cCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceE
Confidence 47899998764 3443333111110223332 56677777642 3577
Q ss_pred EEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEe-C----------------------CeEEEEEcCCCc
Q 001248 928 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-E----------------------TQLAIFETTKLE 984 (1114)
Q Consensus 928 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~-d----------------------~~i~iwd~~~~~ 984 (1114)
+||++... ..+..+....... ......+...++++++.++ + ..+.+||+.+.+
T Consensus 221 ~~d~d~~~-~~W~~~~~~~~~~---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~ 296 (357)
T 2uvk_A 221 ELDFTGNN-LKWNKLAPVSSPD---GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK 296 (357)
T ss_dssp EEECC----CEEEECCCSSTTT---CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---
T ss_pred EEEecCCC-CcEEecCCCCCCc---ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc
Confidence 78772211 1122222111110 0112223344566666632 1 257789988765
Q ss_pred eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC------eEEEEEcCCCeeeEEeC
Q 001248 985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDA------TVCVFSAANLKLRCRIN 1034 (1114)
Q Consensus 985 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg------~I~vwd~~~~~~~~~~~ 1034 (1114)
-...-........ ..+...++++++.|+.++ .|.++++++++.+....
T Consensus 297 W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 297 WDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 4332221111111 122334788888888653 46777999988876655
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.16 E-value=2.3 Score=45.13 Aligned_cols=219 Identities=12% Similarity=0.070 Sum_probs=109.3
Q ss_pred CeEEEEEcCCCccccc-cCCCCCCeEEEEEecCCCcEEEEEeC----CC-------cEEEEEcccceE--EEeecccccC
Q 001248 839 GKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMD----DS-------SIQIYNVRVDEV--KSKLKGHSKR 904 (1114)
Q Consensus 839 g~i~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~la~g~~----dg-------~v~iwd~~~~~~--~~~l~~h~~~ 904 (1114)
..+..||..+.+-... +..........+... ++.+++.|+. ++ .+.+||..+++- +..+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 4588899887654331 121112222333334 7788888883 12 177888876542 2222221111
Q ss_pred eeEEEEcCCCCEEEEEeCC-------CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-e-C---
Q 001248 905 ITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E--- 972 (1114)
Q Consensus 905 V~~l~~s~d~~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~-d--- 972 (1114)
-..+.+ ++++++.|+.+ ..+.+||..+.+ +..+...... ..-.+++. .++++++.+ . +
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~----r~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAK---WSEVKNLPIK----VYGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTE---EEEECCCSSC----EESCEEEE-ETTEEEEECCEESSSC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCC---EeECCCCCCc----ccccEEEE-ECCEEEEEcCCCCCCC
Confidence 222223 67777888764 247788887643 2222111110 01112222 466666663 2 1
Q ss_pred --CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeeeEEeCCCcccCCCCCC
Q 001248 973 --TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSS 1045 (1114)
Q Consensus 973 --~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
..+.+||..+.+-...-.... ...-.+++. -++++++.|+.+ ..+.+||..+.+-... . .+|.....
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~r~~ 246 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-T---EFPQERSS 246 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-C---CCSSCCBS
T ss_pred ccceEEEEcCCCCEEEECCCCCC-CcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-C---CCCCcccc
Confidence 358999998875433221111 111112222 266777777643 3578899888764432 1 12222111
Q ss_pred CCccceEEEecCCCCCeEEEEeCC--------------CcEEEEeccCCC
Q 001248 1046 SNVHPLVIAAHPQEPNEFALGLSD--------------GGVHVFEPLESE 1081 (1114)
Q Consensus 1046 ~~v~~~~~~~~~~d~~~l~s~~~D--------------g~v~vW~i~~~~ 1081 (1114)
+ +++.. ++.+++.|+.+ ..+.++|+.+.+
T Consensus 247 ~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 247 I-----SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp C-----EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred e-----EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 1 22222 46777887764 357788887755
No 339
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.02 E-value=1.3 Score=46.86 Aligned_cols=188 Identities=12% Similarity=0.072 Sum_probs=97.2
Q ss_pred eCCCEEEEEeC----------CeEEEEEcCCCccc--cccCCCCCCeEEEEEecCCCcEEEEEeCC-----CcEEEEEcc
Q 001248 828 KNDSYVMSASG----------GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVR 890 (1114)
Q Consensus 828 ~d~~~l~~~~d----------g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~la~g~~d-----g~v~iwd~~ 890 (1114)
-+++.++.|+. +.+.+||..+.+-. ..+........++.+ ++++++.|+.+ ..+.+||..
T Consensus 69 ~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 69 VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETT
T ss_pred ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCC
Confidence 36666666542 35888998765432 222211122222322 67788887754 368899987
Q ss_pred cce--EEEeecccccCeeEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccC
Q 001248 891 VDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 891 ~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
+.+ .+..+......-.++.+ ++++++.|+.+ ..+.+||+.+.+= ..+...... ..-..++.. +
T Consensus 146 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~----r~~~~~~~~-~ 215 (308)
T 1zgk_A 146 RDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW---RMITAMNTI----RSGAGVCVL-H 215 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE---EECCCCSSC----CBSCEEEEE-T
T ss_pred CCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE---eeCCCCCCc----cccceEEEE-C
Confidence 754 22222221122222333 67777777765 4588999877432 222111111 111222222 6
Q ss_pred CcEEEEE-eC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-----CeEEEEEcCCCeee
Q 001248 964 QIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1030 (1114)
Q Consensus 964 g~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D-----g~I~vwd~~~~~~~ 1030 (1114)
+++++.+ .+ ..+.+||+.+.+-...-.... ...-.+++. -++++++.|+.+ ..|.+||..+.+-.
T Consensus 216 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 216 NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH-RRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC-CccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 6666664 32 469999998775433221111 111112222 267777777654 35788888877644
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.77 E-value=2.9 Score=43.84 Aligned_cols=173 Identities=14% Similarity=0.088 Sum_probs=98.6
Q ss_pred EeeCCCEEEEEe---CCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCC--------------CcEEEEE
Q 001248 826 LSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------------SSIQIYN 888 (1114)
Q Consensus 826 ~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~d--------------g~v~iwd 888 (1114)
++.++.+|.... ++.|...+..... ...+.. -.+--+++ ++..|+..... ..|+..+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----~~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----DTAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----EEEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----CceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 446777777765 4677777765433 333331 12345677 66666665432 3567777
Q ss_pred cccceEEEeecccccCeeEEEEcCCCCEEEEEe--CCC--cEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCC
Q 001248 889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ 964 (1114)
Q Consensus 889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg 964 (1114)
+..++. ..+.. . .+..|++++++|+-.. .++ .|..-+++.... ..+.. . .+ .+|+++|
T Consensus 95 ~dg~~~-~~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--~~lt~---~------~~--~~~~~~g 156 (302)
T 3s25_A 95 RNGHGS-TVLDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--KKIKN---H------YL--FTCNTSD 156 (302)
T ss_dssp TTSCCC-EEEEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC--EEEES---S------CC--CCSEEET
T ss_pred CCCCcc-eEeec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe--EEEeC---C------Cc--eEeeEEC
Confidence 665542 22221 1 1236788899988776 344 444555554322 11111 1 11 3568899
Q ss_pred cEEEEEe--CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCC--eEEEEEcCCCe
Q 001248 965 IHFLVVH--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--TVCVFSAANLK 1028 (1114)
Q Consensus 965 ~~l~~~~--d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg--~I~vwd~~~~~ 1028 (1114)
+.|.-.. ..+|.+.++..+.....+. + ... ..+.|++++|+-...++ .|..-+++.+.
T Consensus 157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 157 RYFYYNNPKNGQLYRYDTASQSEALFYD--C---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp TEEEEECTTTCCEEEEETTTTEEEEEEC--S---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CEEEEEeCCCceEEEEECCCCCEEEEeC--C---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 9988754 4678888887665544332 1 222 34569999988776543 56666766554
No 341
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.77 E-value=5.2 Score=42.61 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=65.9
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCC---CC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS 433 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~ 433 (1114)
.-...+.|+|.|||+ ++++-...|.|++++..+++......+ . .+..........|+|+|| +.
T Consensus 30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~------------~-~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV------------P-GVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC------------T-TCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc------------C-ceeecCCCCceeeEeccccccCC
Confidence 556789999999998 577655589999998766554211000 0 122334567899999995 34
Q ss_pred eEEEE-e--CCCeEEEEEccCCc----e---eeeeE-eec-cccCCeeEEEecCCCCeeEEEEe
Q 001248 434 LFGVA-Y--SRHIVQIYSYHGGD----E---VRQHL-EID-AHVGGVNDIAFSHPNKQLCVITC 485 (1114)
Q Consensus 434 ~las~-~--~dg~i~iwd~~~~~----~---~~~~~-~l~-~h~~~V~~v~~s~d~~~~~l~s~ 485 (1114)
+|... + .++.|.-|.+..+. . ...+. .+. +....-..|+|.|||. +.++.
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~ 157 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGT 157 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEE
Confidence 44332 2 34556667665421 1 11111 121 1122346899999997 44543
No 342
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.77 E-value=0.96 Score=56.67 Aligned_cols=213 Identities=10% Similarity=0.106 Sum_probs=125.6
Q ss_pred EEEcCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCe
Q 001248 364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443 (1114)
Q Consensus 364 v~~spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~ 443 (1114)
.-.+|..+ ++|.-. ..++.|+|+++..++.... ....|..=.|-.+. .|+..+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~--------------------~~e~VvfWkWis~~-~l~lVT-~~a 126 (1630)
T 1xi4_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DNA 126 (1630)
T ss_pred hccCCCcc-eEEEec-CCeEEEeehHHhhhhcccc--------------------cCCCceEEEecCCC-eeEEEc-CCe
Confidence 34567766 566543 6789999999887765311 12357777776444 344443 356
Q ss_pred EEEEEccCCceeeeeEeeccc----cCCeeEEEecCCCCeeEEEEec------CCCCEEEEeCCCCcceeEeeccccCEE
Q 001248 444 VQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPVY 513 (1114)
Q Consensus 444 i~iwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~d~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~h~~~v~ 513 (1114)
|.-|++.+..... ..+..| ...|..-.-+++.+++ +++|= -.|.+.+|.++.+. -+.+.||.+...
T Consensus 127 VyHW~~~~~s~P~--k~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~ 202 (1630)
T 1xi4_A 127 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFA 202 (1630)
T ss_pred EEEeccCCCCccH--HHHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhh
Confidence 9999997533221 123333 3567778888899873 33332 34788999876543 456677766655
Q ss_pred EEeeccCCCceEEEEEec----CCeEEEEEcCCC-CCeeeecCCCCeeEEEEEecCCCeEEeeecccceeEEEecCCCCE
Q 001248 514 SVCPHHKENIQFIFSTAL----DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR 588 (1114)
Q Consensus 514 ~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~ 588 (1114)
.+.....+....+++-.. .+.+++-++... .... .-......+.|.|+.. ..-...+..++.-..
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~---~f~kk~~~~~~~~~~~-------~Dfpv~~~vs~k~g~ 272 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHDV 272 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCC---CCccccccccCCcccc-------cCcceEEEeccccCE
Confidence 444322222222333222 267888887543 1111 1111233445555432 122334666777778
Q ss_pred EEEEeCCCeEEEEECCCcceEEEecc
Q 001248 589 FLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 589 l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
+...+.-|.|++||+.++.++..-..
T Consensus 273 iy~itk~G~~~~~d~~t~~~i~~~ri 298 (1630)
T 1xi4_A 273 VFLITKYGYIHLYDLETGTCIYMNRI 298 (1630)
T ss_pred EEEEecCceEEEEecccchhhhhccc
Confidence 88899999999999999988765543
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.32 E-value=1.5 Score=49.05 Aligned_cols=246 Identities=11% Similarity=0.089 Sum_probs=135.0
Q ss_pred eCCCEEEEEe--CCeEEEEEcCCCccccccCC-CCCCeEEEEEe--cCCCcEEEEEeC-------CCcE---------EE
Q 001248 828 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFH--PQDNNIIAIGMD-------DSSI---------QI 886 (1114)
Q Consensus 828 ~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s--p~d~~~la~g~~-------dg~v---------~i 886 (1114)
.||+||..-. +..|...++...++-+.+.. ....+..+.|- | +..+++.+++ ||.. -+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 5889999988 57788888888776554432 34567777775 5 5556665552 3321 11
Q ss_pred ---EEcccceEEEeecccccCeeEEEEcCCCCEEEEEeCCC---------------cEEEEeCCCC-------cccccc-
Q 001248 887 ---YNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWSSDGW-------EKQKNR- 940 (1114)
Q Consensus 887 ---wd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~---------------~v~iwd~~~~-------~~~~~~- 940 (1114)
.|..+.+....+.- .+..-.+...++|++.++.+... .+.++|+..- +.....
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 12222222111110 12233345567888888776542 3556664321 110000
Q ss_pred -ccccCCCCC------------CCCCCceEEEEccCCcEEEEE--eCCeEEEEEcCCCce-------------eeeeecC
Q 001248 941 -FLQIPTGRT------------PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC-------------VKQWVPR 992 (1114)
Q Consensus 941 -~~~~~~~~~------------~~~~~i~~v~fspdg~~l~~~--~d~~i~iwd~~~~~~-------------~~~~~~~ 992 (1114)
-....++.. +.......+.++|||++++++ .+.++.++|..+... .....
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 011111111 112345788999999999995 577899999875321 11221
Q ss_pred CCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCC----------eeeEEeCCCcccCCCCCCCCccceEEEecCCCCCe
Q 001248 993 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL----------KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1062 (1114)
Q Consensus 993 ~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~ 1062 (1114)
-.......+|.++|.-..+-.-|..|..|++... ..+.++..+....+.|.+. .=.-.+ ||++
T Consensus 376 -~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~-----get~~~-dGk~ 448 (638)
T 3sbq_A 376 -LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASL-----CETNEA-DGKW 448 (638)
T ss_dssp -CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETT-----TTSTTC-CSCE
T ss_pred -CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCC-----CccCCC-CccE
Confidence 1456789999999944445558999999999764 4555555332222111100 001123 6777
Q ss_pred EEEEeC---CC----------cEEEEeccCCCCcc
Q 001248 1063 FALGLS---DG----------GVHVFEPLESEGKW 1084 (1114)
Q Consensus 1063 l~s~~~---Dg----------~v~vW~i~~~~~~~ 1084 (1114)
|++... |. +-.+.||+..+.++
T Consensus 449 lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM~l 483 (638)
T 3sbq_A 449 LVALSKFSKDRFLPVGPLHPENDQLIDISGDEMKL 483 (638)
T ss_dssp EEEEESCCTTSSCCCSSSCCEEEEEEECSSSSCEE
T ss_pred EEEecccccccCcCCCCCCCCcceeEecCCCceEE
Confidence 777642 32 44777777666333
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.25 E-value=4 Score=45.72 Aligned_cols=110 Identities=10% Similarity=0.089 Sum_probs=61.4
Q ss_pred cCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCC--CCCCCCceEEEEccC---CcEEEE--Ee----
Q 001248 903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR--TPTAQSDTRVQFHQD---QIHFLV--VH---- 971 (1114)
Q Consensus 903 ~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~v~fspd---g~~l~~--~~---- 971 (1114)
...++|+|.|||+++++-...+.|++++..++.... ........ ......+..++|+|| +.+|.+ +.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 346799999999977765444568888765443221 11111111 011246679999995 555544 32
Q ss_pred --------CCeEEEEEcCCC-------ceee-eeecCCCCcCeeEEEECCCCCEEEEEEc
Q 001248 972 --------ETQLAIFETTKL-------ECVK-QWVPRESSAPITHATFSCDSQLVYACFL 1015 (1114)
Q Consensus 972 --------d~~i~iwd~~~~-------~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~s~ 1015 (1114)
...|.-|+.... +.+. .+. .........|+|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-SSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-CCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC-CCCCCCCCeEeECCCCeEEEEECC
Confidence 234655655332 1111 121 111234789999999987666543
No 345
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.92 E-value=2.4 Score=45.02 Aligned_cols=193 Identities=7% Similarity=0.003 Sum_probs=96.3
Q ss_pred EEeeCCCEEEEEe-C----C-------eEEEEEcCCCcccc--ccCCCCCCeEEEEEecCCCcEEEEEeCC-------Cc
Q 001248 825 ALSKNDSYVMSAS-G----G-------KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-------SS 883 (1114)
Q Consensus 825 ~~s~d~~~l~~~~-d----g-------~i~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~la~g~~d-------g~ 883 (1114)
+...+++.++.|+ . + .+.+||..+.+-.. .+.........+.+ ++++++.|+.+ ..
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~ 128 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDS 128 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccce
Confidence 3445677777765 1 1 17778877644322 22211112222222 57788888754 35
Q ss_pred EEEEEcccce--EEEeecccccCeeEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCc
Q 001248 884 IQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD 955 (1114)
Q Consensus 884 v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 955 (1114)
+.+||..+.+ .+..+......-.++. .++++++.|+.+ ..+.+||+.+.+ +..+...... ..-
T Consensus 129 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~----r~~ 199 (318)
T 2woz_A 129 VLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD---WKDLAPMKTP----RSM 199 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE---EEEECCCSSC----CBS
T ss_pred EEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE---EEECCCCCCC----ccc
Confidence 8888987653 2222221111111222 367777777642 358899988743 2222111110 111
Q ss_pred eEEEEccCCcEEEEE-eC-----CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC-------------
Q 001248 956 TRVQFHQDQIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------------- 1016 (1114)
Q Consensus 956 ~~v~fspdg~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D------------- 1016 (1114)
..++. -+++.++.+ .+ ..+.+||+.+.+-...-........ .+++ .-++++++.|+.+
T Consensus 200 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~ 276 (318)
T 2woz_A 200 FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS-ISLV-SLAGSLYAIGGFAMIQLESKEFAPTE 276 (318)
T ss_dssp CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS-CEEE-EETTEEEEECCBCCBC----CCBCCB
T ss_pred ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc-eEEE-EECCEEEEECCeeccCCCCceeccce
Confidence 22222 356666663 22 3577899887654332211111111 1222 2366777777654
Q ss_pred -CeEEEEEcCCCeeeEE
Q 001248 1017 -ATVCVFSAANLKLRCR 1032 (1114)
Q Consensus 1017 -g~I~vwd~~~~~~~~~ 1032 (1114)
..+.+||..+.+-...
T Consensus 277 ~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 277 VNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCCEEEEETTTTEEEEE
T ss_pred eeeEEEEeCCCCEehhh
Confidence 3588889888765443
No 346
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.32 E-value=7.7 Score=40.10 Aligned_cols=223 Identities=13% Similarity=0.067 Sum_probs=116.3
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
.|..++....- .++.. ||.|..|-......+..-......|..++... ...++. . ||.|+.|-......+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 56666664432 33333 89999997654332221111123577777653 445555 5 9999999865422111111
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEE
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 979 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd 979 (1114)
.-...|..|+...+ ..+.-. ||.|..|-......... ... ....|..++...+... +.. |+.|..|-
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~-~~~-------~~~~i~~i~~G~~~~~-~l~-~G~v~~wG 165 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV-PAE-------AQSGVTALDGGVYTAL-AVK-NGGVIAWG 165 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC-CGG-------GGSSEEEEEECSSEEE-EEE-TTEEEEEE
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC-Ccc-------CCCCeEEEEcccCEEE-EEE-CCEEEEec
Confidence 11346777877644 333344 99999997765322111 000 0123555544433322 224 89999997
Q ss_pred cCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCC
Q 001248 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1059 (1114)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d 1059 (1114)
......+.... .-...|..++...+.. ++. .||.|+.|=....-.+. .|.. ....+. .++--.
T Consensus 166 ~n~~gqlg~p~--~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-------~p~~-~~~~v~--~i~~G~-- 228 (282)
T 3qhy_B 166 DNYFGQTTVPA--EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-------VPTE-ALSGVS--AIASGE-- 228 (282)
T ss_dssp CCTTSTTSCCG--GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-------CCGG-GGSSCC--EEEECS--
T ss_pred CCCCCCCCCce--ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-------CCcc-cCCCce--EEEcCC--
Confidence 65433322111 1134677777654433 333 59999999765432221 1110 011133 444332
Q ss_pred CCeEEEEeCCCcEEEEeccCC
Q 001248 1060 PNEFALGLSDGGVHVFEPLES 1080 (1114)
Q Consensus 1060 ~~~l~s~~~Dg~v~vW~i~~~ 1080 (1114)
...++.. ||.|+.|--...
T Consensus 229 ~h~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 229 WYSLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp SCEEEEE--TTEEEEESTTCC
T ss_pred CEEEEEE--CCEEEEecCCCC
Confidence 3444444 999999986553
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.31 E-value=13 Score=41.76 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=70.6
Q ss_pred CCCccEEEEeeCCCEEEEEe--CCeEEEEEcCCCcc-------------ccccCCCCCCeEEEEEecCCCcEEEEEeCCC
Q 001248 818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-------------MATFMPPPPAATFLAFHPQDNNIIAIGMDDS 882 (1114)
Q Consensus 818 ~~~v~~v~~s~d~~~l~~~~--dg~i~iwd~~~~~~-------------~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg 882 (1114)
....-.+.++|||+++++++ +.++.++|+..... ..... -.......+|.+ +|+...+-.-|.
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS 399 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS 399 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence 34455789999999999988 78999999874211 11111 234578899999 787667777999
Q ss_pred cEEEEEcccc----------eEEEeecccccCeeEEEE------cCCCCEEEEEe
Q 001248 883 SIQIYNVRVD----------EVKSKLKGHSKRITGLAF------SHALNVLVSSG 921 (1114)
Q Consensus 883 ~v~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~d~~~l~s~s 921 (1114)
+|.-|++... ..+.++.-|-. +-.+.- .+||++|++..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence 9999999764 45556655543 223333 47999999874
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.51 E-value=14 Score=40.27 Aligned_cols=260 Identities=10% Similarity=0.034 Sum_probs=118.4
Q ss_pred CCCccEEEEee--CCCEEEEEeCC----eEEEEEcCCCc---cccc---cCC--------CCCCeEEEEEecCC-CcEEE
Q 001248 818 EEAVPCFALSK--NDSYVMSASGG----KISLFNMMTFK---TMAT---FMP--------PPPAATFLAFHPQD-NNIIA 876 (1114)
Q Consensus 818 ~~~v~~v~~s~--d~~~l~~~~dg----~i~iwd~~~~~---~~~~---~~~--------~~~~i~~l~~sp~d-~~~la 876 (1114)
...|.+++++| ++...+.+..| .|...+ ..++ .+.. +.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 34688999998 55566555554 444332 2222 2211 111 11257789998743 45555
Q ss_pred EEeCCCcEEEEEcc--cceEEEeecc----------------cccCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccc
Q 001248 877 IGMDDSSIQIYNVR--VDEVKSKLKG----------------HSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQ 937 (1114)
Q Consensus 877 ~g~~dg~v~iwd~~--~~~~~~~l~~----------------h~~~V~~l~~s~d-~~~l~s~s~D~~v~iwd~~~~~~~ 937 (1114)
++...+.|+..+-. +.+.+..+.. ....|.+|.+.|. ...|..+..++.|...+-. ++
T Consensus 133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~-- 209 (394)
T 3b7f_A 133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GT-- 209 (394)
T ss_dssp EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TS--
T ss_pred EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CC--
Confidence 56556655544311 2222221111 1235788999873 3444445444434443222 11
Q ss_pred ccccccc-CC-CCCC-----CCCCceEEEEccC-CcEEEEEeCCeEEEEEcCCCceeeeeecCCCC---cCeeEEEECC-
Q 001248 938 KNRFLQI-PT-GRTP-----TAQSDTRVQFHQD-QIHFLVVHETQLAIFETTKLECVKQWVPRESS---APITHATFSC- 1005 (1114)
Q Consensus 938 ~~~~~~~-~~-~~~~-----~~~~i~~v~fspd-g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~---~~v~~l~~s~- 1005 (1114)
.+..... .. ...+ ....+..+++.|+ ...|.++..+.|...+- .++.-..+...-.. ..+.+++++|
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECCC
Confidence 1111111 00 0000 0124788999986 35555555555554432 23222222110001 3456788876
Q ss_pred CCCEEEEEEc-----------CCeEEEEEcCC-CeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEE
Q 001248 1006 DSQLVYACFL-----------DATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1073 (1114)
Q Consensus 1006 dg~~l~s~s~-----------Dg~I~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~ 1073 (1114)
+...|+++.. ++...||...+ |+.-..+. ..+|....-..+....++++|.++..|+.++.++.|+
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 3344554432 33345565544 44433332 1122211000011125777776666677777666654
Q ss_pred EEeccCCCCcccC
Q 001248 1074 VFEPLESEGKWGV 1086 (1114)
Q Consensus 1074 vW~i~~~~~~~~~ 1086 (1114)
.-.++-..|..
T Consensus 367 --~S~D~G~tW~~ 377 (394)
T 3b7f_A 367 --ASADEGEHWQC 377 (394)
T ss_dssp --EESSTTSBCEE
T ss_pred --EECCCCCCceE
Confidence 33333344543
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.32 E-value=12 Score=39.00 Aligned_cols=107 Identities=9% Similarity=0.090 Sum_probs=64.6
Q ss_pred EEEEcCCCCeEEEEEecC-------------CcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEc
Q 001248 363 SMDFHPVQQTLLLVGTNV-------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS 429 (1114)
Q Consensus 363 ~v~~spdg~~ll~tg~~d-------------g~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~s 429 (1114)
+--++++|.+|..+...+ +.|+..+++.++... +... .+..|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~----~~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD----PCIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS----CEEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC----CccEEE
Confidence 456789999977776654 357777776654322 1111 223788
Q ss_pred CCCCeEEEEe--CC--CeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCEEEEeCCCCcce
Q 001248 430 PDGSLFGVAY--SR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502 (1114)
Q Consensus 430 pdg~~las~~--~d--g~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~ 502 (1114)
+++++|+-.. .+ ..|...++.... .. .+..+.. .+|+++++.+ ..+......|.+-++..+...
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~i-y~t~~g~~~Iy~~~l~g~~~~ 180 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRYF-YYNNPKNGQLYRYDTASQSEA 180 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTEE-EEECTTTCCEEEEETTTTEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCEE-EEEeCCCceEEEEECCCCCEE
Confidence 8999999876 33 345555555433 22 2333322 4678889863 344445678888887765543
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.62 E-value=6 Score=47.24 Aligned_cols=194 Identities=10% Similarity=0.073 Sum_probs=105.0
Q ss_pred eCCCEEEEEe-C----CeEEEEEcCCCcccccc--------CCCCCCeEEEEEecCCCcEEEEEeCCC------cEEEEE
Q 001248 828 KNDSYVMSAS-G----GKISLFNMMTFKTMATF--------MPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIYN 888 (1114)
Q Consensus 828 ~d~~~l~~~~-d----g~i~iwd~~~~~~~~~~--------~~~~~~i~~l~~sp~d~~~la~g~~dg------~v~iwd 888 (1114)
.++..++.|+ + +.+.+||..+.+-...- ........++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 5667777776 3 45889998775433221 11112233444433 567888887543 588999
Q ss_pred cccc--eEEEeecccccCeeEEEEcCCCCEEEEEeCCC--cEEEEeCCCCcccccccccc----CCCCCCCCCCceEEEE
Q 001248 889 VRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQI----PTGRTPTAQSDTRVQF 960 (1114)
Q Consensus 889 ~~~~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~----~~~~~~~~~~i~~v~f 960 (1114)
..+. +.+..+......- +++...++++++.||.++ .+.+||..+.. +..+.. +... ..-..+.+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~---W~~~~~~g~~p~~r----~~~~a~v~ 546 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEI---FKDVTPKDEFFQNS----LVSAGLEF 546 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTE---EEECCCSSGGGGSC----CBSCEEEE
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCc---eEEccCCCCCCCcc----cceeEEEE
Confidence 8874 3333332211111 223324788899888765 68999988743 222221 1111 12234566
Q ss_pred ccC-CcEEEEE-e--C-----CeEEEEEcCCCce------eeeeecCCCCcCeeEEEECCCCCEEEEEEcC--------C
Q 001248 961 HQD-QIHFLVV-H--E-----TQLAIFETTKLEC------VKQWVPRESSAPITHATFSCDSQLVYACFLD--------A 1017 (1114)
Q Consensus 961 spd-g~~l~~~-~--d-----~~i~iwd~~~~~~------~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D--------g 1017 (1114)
..+ ++.++.| . + ..+.+||+.+... ............-.+++...++++++.|+.+ .
T Consensus 547 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 626 (695)
T 2zwa_A 547 DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTN 626 (695)
T ss_dssp ETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTT
T ss_pred eCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCC
Confidence 655 5566654 2 2 3588999988771 1111100001111223333347777777743 4
Q ss_pred eEEEEEcCCCeee
Q 001248 1018 TVCVFSAANLKLR 1030 (1114)
Q Consensus 1018 ~I~vwd~~~~~~~ 1030 (1114)
.|.+||..+.+-.
T Consensus 627 ~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 627 SIISLDPLSETLT 639 (695)
T ss_dssp SEEEEETTTTEEE
T ss_pred eEEEEECCCCeEE
Confidence 5999999988765
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.61 E-value=29 Score=38.61 Aligned_cols=115 Identities=13% Similarity=0.133 Sum_probs=61.2
Q ss_pred CCceEEEEcCCCC-eEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCccccccccc----CCCCCeeEEEEcCC--
Q 001248 359 SSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK----DPGVSVNRVIWSPD-- 431 (1114)
Q Consensus 359 ~~v~~v~~spdg~-~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----~h~~~V~~l~~spd-- 431 (1114)
...+.|+|.|||. +|+++ ...|.|++++...... . .. +.++. ..+.. +.......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~-~-~~--~~~~~-------~~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFIL-EKEGYVKILTPEGEIF-K-EP--YLDIH-------KLVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp SSEEEEECCSSSSCCEEEE-ETTTEEEEECTTSCBC-S-SC--SEECT-------TTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred CCceEEEECCCCCeEEEEE-eCCceEEEEeCCCCee-e-ee--ecCCc-------ceeccCccccCCCcceeeEeCCCCc
Confidence 5679999999995 54554 6789999997543211 0 00 01110 11111 22467889999996
Q ss_pred --CCeEEEEeC--C----------CeEEEEEccCC--c-----eeeeeEeec--cccCCeeEEEecCCCCeeEEEEec
Q 001248 432 --GSLFGVAYS--R----------HIVQIYSYHGG--D-----EVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCG 486 (1114)
Q Consensus 432 --g~~las~~~--d----------g~i~iwd~~~~--~-----~~~~~~~l~--~h~~~V~~v~~s~d~~~~~l~s~~ 486 (1114)
+.+.++-+. + ..|.-|.+..+ . ..+.+..+. .....-..|+|.|||. ||+.+|.
T Consensus 82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd 158 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD 158 (463)
T ss_dssp HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence 444444332 1 13555666432 0 111111221 1223467999999997 3555554
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=89.21 E-value=22 Score=36.60 Aligned_cols=184 Identities=9% Similarity=0.011 Sum_probs=98.7
Q ss_pred CccEEEEeeCCCEEEEEeCCeEEEEEcCCCccccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEcccceEEEeec
Q 001248 820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 899 (1114)
Q Consensus 820 ~v~~v~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~~~~~~~l~ 899 (1114)
.|..++...+-. ++. .||.|..|-......+-.-......|..++... ...++ -. ||.|+.|-......+....
T Consensus 64 ~i~~ia~G~~hs-~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~--~hs~a-l~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYA-LK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET--TEEEE-EE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC--CEEEE-Ee-CCeEEEecCCCCCcCCCCc
Confidence 466666654433 333 488999887654322211111124677777764 33344 45 9999999765422121111
Q ss_pred ccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEE
Q 001248 900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 979 (1114)
Q Consensus 900 ~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd 979 (1114)
.....|..|+...+. .++ -. ||.|..|-......... +... ...|..++...+... +. .|+.|..|-
T Consensus 138 ~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gqlg~-p~~~-------~~~v~~i~~G~~hs~-al-~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQTTV-PAEA-------QSGVDDVAGGIFHSL-AL-KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTTSC-CGGG-------GSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred cCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCCCC-ceec-------CCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence 233557777765432 233 34 79999997765322211 1111 124556655444443 34 699999997
Q ss_pred cCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCC
Q 001248 980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1114)
Q Consensus 980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~ 1027 (1114)
......+.... .....|..++-..+...++ . ||.|+.|=....
T Consensus 205 ~n~~gqlg~p~--~~~~~v~~i~~G~~h~~al-~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 205 DNRYKQTTVPT--EALSGVSAIASGEWYSLAL-K--NGKVIAWGSSRT 247 (282)
T ss_dssp CCTTSTTCCCG--GGGSSCCEEEECSSCEEEE-E--TTEEEEESTTCC
T ss_pred CCCCCCCCCCc--ccCCCceEEEcCCCEEEEE-E--CCEEEEecCCCC
Confidence 65433322111 1134577777654443333 3 999999976654
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.21 E-value=11 Score=40.44 Aligned_cols=172 Identities=12% Similarity=0.154 Sum_probs=92.7
Q ss_pred eEEEEEcCCC--ccccccCC------CCCCeEEEEEe---cC---CCcEEEEEe-CCCcEEEEEcccceEEEeec-----
Q 001248 840 KISLFNMMTF--KTMATFMP------PPPAATFLAFH---PQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLK----- 899 (1114)
Q Consensus 840 ~i~iwd~~~~--~~~~~~~~------~~~~i~~l~~s---p~---d~~~la~g~-~dg~v~iwd~~~~~~~~~l~----- 899 (1114)
+|.+||+.+. +.++++.- .......+++. |. ++.++..+. ..+.|.|||+.+++..+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4666777766 65554422 23457788887 21 134444444 46789999999887554442
Q ss_pred ---------cc----ccCeeEEEEcCC----CCEEEEEeCCCcEEEEeCCCCccccccc---cccCCCCCCCCCCceEEE
Q 001248 900 ---------GH----SKRITGLAFSHA----LNVLVSSGADSQLCVWSSDGWEKQKNRF---LQIPTGRTPTAQSDTRVQ 959 (1114)
Q Consensus 900 ---------~h----~~~V~~l~~s~d----~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~i~~v~ 959 (1114)
|. ...|.+|++||+ +++|.-..-.+ -++|.+.+.-...... ++.. |.......-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 11 136888999998 77877666555 3556554321111100 0000 0010001123456
Q ss_pred Ec-cCCcEEEE-EeCCeEEEEEcCC-C---ceeeeeecCCCCcCeeEEEECCCCCEEEEE
Q 001248 960 FH-QDQIHFLV-VHETQLAIFETTK-L---ECVKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1114)
Q Consensus 960 fs-pdg~~l~~-~~d~~i~iwd~~~-~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1114)
+. .+|.++++ .....|..|+..+ . +....+..+..-..+..+.+.++|.+.+.+
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 65 56776666 4778899999875 1 122222222223356677776666544444
No 354
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.06 E-value=0.67 Score=49.28 Aligned_cols=125 Identities=9% Similarity=0.047 Sum_probs=70.6
Q ss_pred EEEEecCCCCEEEEeCCCCcceeEeecc-ccCEEEEeeccC-CCceEEEEE-ecCCeEEEEEcCCCCCeeeecCCCC-ee
Q 001248 481 CVITCGDDKTIKVWDATNGAKQYIFEGH-EAPVYSVCPHHK-ENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGR-WC 556 (1114)
Q Consensus 481 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~-~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~-~v 556 (1114)
+++.++.||.|.-.|..+|+.+.++... ..++....-... .++..++.. +.||.|..++..++.....+..... ..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5788899999999999999999888754 123322211011 132333333 5799999998876533322211100 00
Q ss_pred EEEEEecCCCeEEeeecccceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccC
Q 001248 557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 615 (1114)
Q Consensus 557 ~~~~~s~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 615 (1114)
..+.. ++.-++ .-.--...+..+++|+.+|.+...|+.+|+.+..+...
T Consensus 92 SP~~~--~~~pvv--------~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 92 SPLHL--KTNIVV--------NDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp CSEEE--ECC------------------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccccc--CCCcee--------ecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 00000 000000 00000002346889999999999999999999998754
No 355
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=88.26 E-value=28 Score=36.63 Aligned_cols=159 Identities=8% Similarity=0.058 Sum_probs=92.9
Q ss_pred CCCCccEEEEee---CCCEEEEEe-CCeEEEEEcCCCccc-------cccCCCCCCeEEEEEecCCCcEEEEEeCCCcEE
Q 001248 817 PEEAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFKTM-------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 885 (1114)
Q Consensus 817 ~~~~v~~v~~s~---d~~~l~~~~-dg~i~iwd~~~~~~~-------~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~ 885 (1114)
....|.++..-+ +..+++..+ +|.++...+...... ..+.. ...+..+.... +...|+..+..|.+.
T Consensus 93 ~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~ 170 (327)
T 3uc1_A 93 PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSI 170 (327)
T ss_dssp TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEE
T ss_pred CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEE
Confidence 345555554433 467888877 899999887653322 22332 34555555555 456777788999998
Q ss_pred EEEcc--c---------ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-----ccccccCCCCC
Q 001248 886 IYNVR--V---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-----NRFLQIPTGRT 949 (1114)
Q Consensus 886 iwd~~--~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~-----~~~~~~~~~~~ 949 (1114)
.+... . |.....+. ....|.++...+++..|+.++..|.++.-.+....... ...+.....
T Consensus 171 rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~-- 247 (327)
T 3uc1_A 171 RFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR-- 247 (327)
T ss_dssp EEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT--
T ss_pred EEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC--
Confidence 88776 2 11122232 24567777776677799999999999988876533211 111111110
Q ss_pred CCCCCceEEEE-ccCCcEEEEEeCCeEEEEEcCC
Q 001248 950 PTAQSDTRVQF-HQDQIHFLVVHETQLAIFETTK 982 (1114)
Q Consensus 950 ~~~~~i~~v~f-spdg~~l~~~~d~~i~iwd~~~ 982 (1114)
.+.+..+.. ..+...++++.+|.+..++...
T Consensus 248 --~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 248 --RGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp --TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred --CCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 123333333 3444455557788877777543
No 356
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=84.65 E-value=15 Score=43.65 Aligned_cols=196 Identities=11% Similarity=0.055 Sum_probs=101.5
Q ss_pred CCcEEEEEeCC----CcEEEEEcccce--EEE-e-----ecccccCeeEEEEcCCCCEEEEEeCCC------cEEEEeCC
Q 001248 871 DNNIIAIGMDD----SSIQIYNVRVDE--VKS-K-----LKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSD 932 (1114)
Q Consensus 871 d~~~la~g~~d----g~v~iwd~~~~~--~~~-~-----l~~h~~~V~~l~~s~d~~~l~s~s~D~------~v~iwd~~ 932 (1114)
++.+++.|+.+ ..+.+||..+++ .+. . +......-..+.+..++++++.||.++ .+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 67788888754 368889987753 222 2 111111122333322777888887543 47888888
Q ss_pred CCccccccccccCCCCCCCCCCceEEEEccCCcEEEEE-eCC--eEEEEEcCCCceeeeee---cCCCCcCeeEEEECCC
Q 001248 933 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET--QLAIFETTKLECVKQWV---PRESSAPITHATFSCD 1006 (1114)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~-~d~--~i~iwd~~~~~~~~~~~---~~~h~~~v~~l~~s~d 1006 (1114)
+.+ +..+..... ...-.+++.-.+++.++.| .++ .+.+||..+..-...-. .......-.++.+..+
T Consensus 477 t~~---W~~~~~~p~----~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 477 TRE---WSMIKSLSH----TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTE---EEECCCCSB----CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCc---EEECCCCCC----CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 743 222211111 0111333443477777774 222 79999998875433221 0001112233555554
Q ss_pred -CCEEEEEEc--C-----CeEEEEEcCCCee-----eEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC----
Q 001248 1007 -SQLVYACFL--D-----ATVCVFSAANLKL-----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---- 1069 (1114)
Q Consensus 1007 -g~~l~s~s~--D-----g~I~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D---- 1069 (1114)
+++++.|+. + ..+.+||+.+..- -..+......+.. .+ +++... ++.+++.|+.+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~--~~-----~~~~~~-~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY--GS-----QIKYIT-PRKLLIVGGTSPSGL 621 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB--SC-----EEEEEE-TTEEEEECCBCSSCC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc--cc-----eEEEeC-CCEEEEECCccCCCC
Confidence 666777765 2 3589999988872 1222110011111 11 222222 26778888743
Q ss_pred ----CcEEEEeccCCC
Q 001248 1070 ----GGVHVFEPLESE 1081 (1114)
Q Consensus 1070 ----g~v~vW~i~~~~ 1081 (1114)
..+.++|+.+.+
T Consensus 622 ~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 622 FDRTNSIISLDPLSET 637 (695)
T ss_dssp CCTTTSEEEEETTTTE
T ss_pred CCCCCeEEEEECCCCe
Confidence 468899988765
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=84.53 E-value=72 Score=37.75 Aligned_cols=235 Identities=12% Similarity=0.132 Sum_probs=122.3
Q ss_pred EEE-EeeCCCEEEEEe--C----CeEEEEEcCCCccccc-cCCCCC--------CeEEEEEecCCCcEEEEEe-------
Q 001248 823 CFA-LSKNDSYVMSAS--G----GKISLFNMMTFKTMAT-FMPPPP--------AATFLAFHPQDNNIIAIGM------- 879 (1114)
Q Consensus 823 ~v~-~s~d~~~l~~~~--d----g~i~iwd~~~~~~~~~-~~~~~~--------~i~~l~~sp~d~~~la~g~------- 879 (1114)
.+. ++||+++++.+- + ..++++|+.+++.+.. +. ... ....++|.. +..++++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCBC
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEEC-CCEEEEEeCCCCCCcC
Confidence 344 889999888662 2 3599999999877642 22 111 113447764 444444321
Q ss_pred ---CCCcEEEEEcccc--eEEEeecccccCe-eEEEEcCCCC-----EEEEEeCC---CcEEEEeCCCCccccccccccC
Q 001248 880 ---DDSSIQIYNVRVD--EVKSKLKGHSKRI-TGLAFSHALN-----VLVSSGAD---SQLCVWSSDGWEKQKNRFLQIP 945 (1114)
Q Consensus 880 ---~dg~v~iwd~~~~--~~~~~l~~h~~~V-~~l~~s~d~~-----~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~ 945 (1114)
...+|+.|.+-+. +-...+.+....+ .+...+++++ .+++.+.+ ..+.+.+....... ...+...
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 289 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMP 289 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecC
Confidence 1236888887653 1222333322222 3455667766 34554423 33455555431111 1112111
Q ss_pred CCCCCCCCCceEEEEccCCcEEEEE-----------eCCeEEEEEcCCCc-------eeeeeecCCCCcCeeEEEECCCC
Q 001248 946 TGRTPTAQSDTRVQFHQDQIHFLVV-----------HETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDS 1007 (1114)
Q Consensus 946 ~~~~~~~~~i~~v~fspdg~~l~~~-----------~d~~i~iwd~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg 1007 (1114)
. -..+..+.++.+++.. ..+.|.+.++.++. ....+........+..+.+..+
T Consensus 290 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 360 (711)
T 4hvt_A 290 S--------DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD- 360 (711)
T ss_dssp T--------TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-
T ss_pred C--------cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-
Confidence 1 1223455667666632 35678899987642 2223233334567888999876
Q ss_pred CEEEEEEcCCe--EEEEEcCCCe-eeEE-eCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCC---CcEEEEecc
Q 001248 1008 QLVYACFLDAT--VCVFSAANLK-LRCR-INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPL 1078 (1114)
Q Consensus 1008 ~~l~s~s~Dg~--I~vwd~~~~~-~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D---g~v~vW~i~ 1078 (1114)
.++++...++. ++++++.+++ .... +. ++.. ..+. .....++.+.++++.++. +.++.+++.
T Consensus 361 ~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~----lp~~---~~~~--~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 361 RVFLATYDNVVAKVVTFTLENEQWTKPVVLK----LPYQ---NAIF--GMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CEEEEEEETTEEEEEEECEETTEECCCEEEC----CCST---TCEE--EEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEEECCEEEEEEEECCCCceEEEeccC----CCCC---eEEE--EEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 56777777775 6777777775 2222 33 2211 1122 233445344555554433 577777766
No 358
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.08 E-value=17 Score=40.49 Aligned_cols=113 Identities=11% Similarity=0.048 Sum_probs=61.1
Q ss_pred cCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccccccCCCCC-----CCCCCceEEEEccC----CcEEEE-Ee
Q 001248 903 KRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQD----QIHFLV-VH 971 (1114)
Q Consensus 903 ~~V~~l~~s~d~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~i~~v~fspd----g~~l~~-~~ 971 (1114)
..-++|+|.|||. .|+++...|.|++++.+.... ......+..... ........|+|+|+ +.+.++ +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 3457899999996 455567889999997543211 111111111000 01246788999997 444333 42
Q ss_pred C------------CeEEEEEcCCC----------ceeeeeecCCCCcCeeEEEECCCCCEEEEEEcC
Q 001248 972 E------------TQLAIFETTKL----------ECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1016 (1114)
Q Consensus 972 d------------~~i~iwd~~~~----------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~D 1016 (1114)
+ ..|.-|.+..+ +.+..+...........|+|.|||.+.++.+..
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 13444655421 122222211212346789999999876666543
No 359
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=81.80 E-value=49 Score=33.77 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=73.7
Q ss_pred CCCCccEEEEee--CCCEEEEEe-CCeEEEEEcCCCc------cccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEE
Q 001248 817 PEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFK------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887 (1114)
Q Consensus 817 ~~~~v~~v~~s~--d~~~l~~~~-dg~i~iwd~~~~~------~~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iw 887 (1114)
....|..+.. . +..+++..+ +|.++...+.... ....+. ....+..+.... +...|+..+.+|.++.+
T Consensus 66 ~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~ 142 (276)
T 3no0_A 66 REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARF 142 (276)
T ss_dssp TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEE
T ss_pred CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEE
Confidence 3555666644 4 466777777 8999999876543 111222 234566655555 55678888899999988
Q ss_pred Eccc---------ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001248 888 NVRV---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933 (1114)
Q Consensus 888 d~~~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~ 933 (1114)
.... |.....+.. ...|.++...+++..++..+..|.++...+..
T Consensus 143 ~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 143 SVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 8653 222223332 35677766666677899999999999988765
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.97 E-value=5.8 Score=49.18 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=52.2
Q ss_pred cCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCcccCCCCCCCCccceEEEecCCCCCeEEEE---eCCCcE
Q 001248 996 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG---LSDGGV 1072 (1114)
Q Consensus 996 ~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~---~~Dg~v 1072 (1114)
..+.+++..++..++++.+.|+++|+|++.+++++.........+... . .. .....+..+.++.+- ..+|..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~--~-~~--~~~~~~~~~~~i~v~~s~~~~g~F 310 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQ--S-FP--YLTSDHTTNSFIALYYPDNSHGSF 310 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSC--C-CC--CEEECSSSTTEEEEEECCSSSCEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccc--c-cc--ccccCCCcccEEEEEEcCCCCcEE
Confidence 356778888899999999999999999999999998765433222211 1 11 122233334444432 346788
Q ss_pred EEEeccCCC
Q 001248 1073 HVFEPLESE 1081 (1114)
Q Consensus 1073 ~vW~i~~~~ 1081 (1114)
++|.+....
T Consensus 311 ~~~~~~~~~ 319 (950)
T 4gq2_M 311 SIYKLNANA 319 (950)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEecCC
Confidence 888876544
No 361
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=73.63 E-value=1e+02 Score=33.18 Aligned_cols=203 Identities=10% Similarity=0.047 Sum_probs=90.6
Q ss_pred CcEEEEEeCCCcEEEEEccc----ceEEEeecccccCeeEEEEcC--CCCEEEEEeCCC----cEEEEeCCCCccccccc
Q 001248 872 NNIIAIGMDDSSIQIYNVRV----DEVKSKLKGHSKRITGLAFSH--ALNVLVSSGADS----QLCVWSSDGWEKQKNRF 941 (1114)
Q Consensus 872 ~~~la~g~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~l~~s~--d~~~l~s~s~D~----~v~iwd~~~~~~~~~~~ 941 (1114)
...|.+|+..| +.+++... .+..... .....|.+|++.| ++.+++. +..+ .|...+ +.++. +..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g-~~~g~~g~gl~~s~-D~G~t--W~~ 95 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMA-ARTGHLGPTVFRSD-DGGGN--WTE 95 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEE-EEC--CCEEEEEES-STTSC--CEE
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEE-ecCCCCCccEEEeC-CCCCC--ceE
Confidence 34666677777 55555432 2222211 1235699999998 5555554 4344 343332 22211 111
Q ss_pred cccCCCCCC--------CCCCceEEEEcc---CCcEEEEEeCCeEEEEEcCCCceeeeeec-----------------CC
Q 001248 942 LQIPTGRTP--------TAQSDTRVQFHQ---DQIHFLVVHETQLAIFETTKLECVKQWVP-----------------RE 993 (1114)
Q Consensus 942 ~~~~~~~~~--------~~~~i~~v~fsp---dg~~l~~~~d~~i~iwd~~~~~~~~~~~~-----------------~~ 993 (1114)
+........ ....|..+++.| .+.+.+.+..+.|...+- .++.-..+.. ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~ 174 (394)
T 3b7f_A 96 ATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTP 174 (394)
T ss_dssp CSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----C
T ss_pred CCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCC
Confidence 111100000 012466788886 455555455665554432 2222111110 01
Q ss_pred CCcCeeEEEECCC-CCEEEEEEcCCeEEEEEcCCCeeeEEeCC---CcccCCCCCCCCccceEEEecCCCCCeEEEEeCC
Q 001248 994 SSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINP---SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1069 (1114)
Q Consensus 994 h~~~v~~l~~s~d-g~~l~s~s~Dg~I~vwd~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~D 1069 (1114)
....+.+|.+.|. ...|+.+..++.|...+ +.|+.-..+.. ..+++............+.++|.++..|..+...
T Consensus 175 ~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~ 253 (394)
T 3b7f_A 175 DGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC 253 (394)
T ss_dssp CCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT
T ss_pred CCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC
Confidence 1345789999883 44555555555544432 33433333221 1112211000001233778888666777777654
Q ss_pred CcEEEEeccCCCCccc
Q 001248 1070 GGVHVFEPLESEGKWG 1085 (1114)
Q Consensus 1070 g~v~vW~i~~~~~~~~ 1085 (1114)
| | |...++-..|.
T Consensus 254 g-l--~~s~D~G~tW~ 266 (394)
T 3b7f_A 254 G-I--YRMDRREGVWK 266 (394)
T ss_dssp E-E--EEEETTTTEEE
T ss_pred e-E--EEeCCCCCcce
Confidence 4 3 33333333443
No 362
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.83 E-value=1e+02 Score=38.10 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=47.6
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEeccCCCC---CCcCeEEEcC-CCCEEEEE---eCCCcEEEEEcc
Q 001248 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL---PASPRIRFNK-DGCLLAVS---TNDNGIKILATS 648 (1114)
Q Consensus 576 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~~~~s~-d~~~l~~~---~~dg~i~iwd~~ 648 (1114)
.+.++...++..++++.+.|+++|+|++.+++++.+....... .........+ .+.++.+- ..+|.+++|.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~~ 316 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLN 316 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEEe
Confidence 4556677788889999999999999999999999887542211 1112233344 33444332 245777777654
No 363
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=70.38 E-value=1.2e+02 Score=32.48 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=39.9
Q ss_pred eEEEEEccCC--ceeeeeEeecc----ccCCeeEEEec---CC---CCeeEEEEecCCCCEEEEeCCCCcceeEe
Q 001248 443 IVQIYSYHGG--DEVRQHLEIDA----HVGGVNDIAFS---HP---NKQLCVITCGDDKTIKVWDATNGAKQYIF 505 (1114)
Q Consensus 443 ~i~iwd~~~~--~~~~~~~~l~~----h~~~V~~v~~s---~d---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 505 (1114)
.|.+||+.++ +.++.. .+.. ....+..+++. ++ +.....++-+...-|.|+|+.+++.-+.+
T Consensus 124 kLv~~DL~t~~~~li~~y-~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~ 197 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRY-YFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT 197 (381)
T ss_dssp EEEEEESSSTTCCEEEEE-ECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCceeEEEE-ECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc
Confidence 5788899888 766533 3321 23457788887 22 13324556556778999999998766544
No 364
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=69.82 E-value=1e+02 Score=31.39 Aligned_cols=197 Identities=4% Similarity=-0.003 Sum_probs=104.4
Q ss_pred CccEEEE-eeCCCEEEEEeCCeEEE---EEcCCCccccccCCCCCCeEEEEEecC-CCcEEEEEeCCCcEEEEEcccc--
Q 001248 820 AVPCFAL-SKNDSYVMSASGGKISL---FNMMTFKTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRVD-- 892 (1114)
Q Consensus 820 ~v~~v~~-s~d~~~l~~~~dg~i~i---wd~~~~~~~~~~~~~~~~i~~l~~sp~-d~~~la~g~~dg~v~iwd~~~~-- 892 (1114)
.+..+.. +.....++..+.|.++- |++..+.....+. ....|..+.. ++ +..+++..+.+|.++-..+..-
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 3444433 33444445555777554 4443221111133 3455666644 42 3568899999999999987653
Q ss_pred ----eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc-----cccccccCCCCCCCCCCceEEEEccC
Q 001248 893 ----EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-----KNRFLQIPTGRTPTAQSDTRVQFHQD 963 (1114)
Q Consensus 893 ----~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~i~~v~fspd 963 (1114)
.....++. .+.+..+........|+..+..|.+..++...-... ....+....+ ..|..+...++
T Consensus 103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~ 176 (276)
T 3no0_A 103 KAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNG 176 (276)
T ss_dssp CSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESS
T ss_pred hcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCC
Confidence 22223332 355666666656678888999998888876432111 0111111111 24555544444
Q ss_pred CcEE-EEEeCCeEEEEEcCCCc-------eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEE--EEcCCC
Q 001248 964 QIHF-LVVHETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV--FSAANL 1027 (1114)
Q Consensus 964 g~~l-~~~~d~~i~iwd~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~v--wd~~~~ 1027 (1114)
+.++ +++..|.++...+.... -+..+ ...+.+..+....+...++..+.+|.+.. ++.+.-
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i---~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS---GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC---CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE---cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 4444 44788888877754322 12222 11334544443333445666667777776 766543
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=66.00 E-value=38 Score=39.52 Aligned_cols=37 Identities=8% Similarity=0.134 Sum_probs=30.8
Q ss_pred CeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCC
Q 001248 997 PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1114)
Q Consensus 997 ~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~ 1035 (1114)
.|.++.+ +..+|++-+.|+++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555554 578999999999999999999999887764
No 366
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=65.14 E-value=8.6 Score=35.33 Aligned_cols=55 Identities=15% Similarity=0.252 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhccccccc
Q 001248 72 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRE 126 (1114)
Q Consensus 72 ~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~ 126 (1114)
++|-++-+.||||+..|...+|..++.+--.-+.....+.+++|..+....+...
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~ 106 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKG 106 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhh
Confidence 9999999999999999999999999984433333445677777776655444433
No 367
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=63.38 E-value=1.4e+02 Score=30.87 Aligned_cols=202 Identities=14% Similarity=0.109 Sum_probs=113.3
Q ss_pred CCCcccccccCCCceeEEEeccCCCCcc----ccccccCccccccceEEEEEccCcceeeecccCceEEEEeecccccCC
Q 001248 712 ADVKPRITEESNDKSKVWKLTELSEPNQ----CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 787 (1114)
Q Consensus 712 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 787 (1114)
++...+++.+.+|.|+--.+........ ...+.+. ..+.+..+........++..+..|.++-..... ...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk---e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~--ip~ 80 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN---DGDEIVIALCVNTHDYLFMISNEGKLYLINAYE--IKD 80 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC---TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGG--SCC
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC---CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHH--CCC
Confidence 3556788889999998887765543221 1111111 234556666666666677778888766544321 000
Q ss_pred CCCccccccccccCCCCCccccccCCCCCCCCCccEEEEee---CCCEEEEEe-CCeEEEEEcCCCc-------cccccC
Q 001248 788 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKISLFNMMTFK-------TMATFM 856 (1114)
Q Consensus 788 ~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~---d~~~l~~~~-dg~i~iwd~~~~~-------~~~~~~ 856 (1114)
.+. ...|..+...+. ......|.++..-+ +..+++..+ .|.++...+.... ....+.
T Consensus 81 ~~r-----------~~~G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~ 148 (312)
T 1suu_A 81 SSR-----------ASKGQNISELIN-LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN 148 (312)
T ss_dssp ------------------CBGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC
T ss_pred CCc-----------cCCCcChhhccC-CCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC
Confidence 000 011222211121 11334455554332 355566666 8998888775332 222333
Q ss_pred CCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc---------ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEE
Q 001248 857 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 927 (1114)
Q Consensus 857 ~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~ 927 (1114)
. ...+..+.... +...++..+.+|.+..+.... |.....+.. .+.|.++....++..|++.+..|..+
T Consensus 149 ~-~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~k 225 (312)
T 1suu_A 149 D-KDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGK 225 (312)
T ss_dssp T-TCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEE
T ss_pred C-CCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceE
Confidence 3 45566665554 456788889999999998754 222233332 45666766655667788999999999
Q ss_pred EEeCCC
Q 001248 928 VWSSDG 933 (1114)
Q Consensus 928 iwd~~~ 933 (1114)
..+++.
T Consensus 226 r~~~~e 231 (312)
T 1suu_A 226 RLNMSK 231 (312)
T ss_dssp EEEGGG
T ss_pred EEEHHH
Confidence 988865
No 368
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=62.77 E-value=6.8 Score=35.06 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccc
Q 001248 72 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFR 125 (1114)
Q Consensus 72 ~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~ 125 (1114)
++|-++-+.||||+..|..++|..++.+--.-+... .+.++.|..+....+..
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~ 85 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIH 85 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHh
Confidence 999999999999999999999999998543333344 56666666555444443
No 369
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=55.64 E-value=3.1e+02 Score=32.28 Aligned_cols=181 Identities=10% Similarity=0.009 Sum_probs=91.1
Q ss_pred CeEEEEEcCCCcc--ccccCCCCCCe-EEEEEecCCCc-----EEEEEe---CCCcEEEEEccc--ceEEEeecccccCe
Q 001248 839 GKISLFNMMTFKT--MATFMPPPPAA-TFLAFHPQDNN-----IIAIGM---DDSSIQIYNVRV--DEVKSKLKGHSKRI 905 (1114)
Q Consensus 839 g~i~iwd~~~~~~--~~~~~~~~~~i-~~l~~sp~d~~-----~la~g~---~dg~v~iwd~~~--~~~~~~l~~h~~~V 905 (1114)
.+|+.|.+-+... ...+.+....+ .....++ +++ .+++.+ ....+++.+... ++. ..+.....
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~-- 291 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSD-- 291 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTT--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCc--
Confidence 4588888765432 22233333332 3344556 444 244333 224566666553 432 23322222
Q ss_pred eEEEEcCCCCEEEEE----------eCCCcEEEEeCCCCcc-----ccccccccCCCCCCCCCCceEEEEccCCcEEEEE
Q 001248 906 TGLAFSHALNVLVSS----------GADSQLCVWSSDGWEK-----QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV 970 (1114)
Q Consensus 906 ~~l~~s~d~~~l~s~----------s~D~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~ 970 (1114)
..+..+.++.+++.. ...+.|.+.++.+... .....+-.... ...+..+.+..+.-++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~l~~~~~ 367 (711)
T 4hvt_A 292 ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA----NEVFNFISTTKDRVFLATY 367 (711)
T ss_dssp CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT----TEEEEEEEECSSCEEEEEE
T ss_pred ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC----CCeEEEEEEECCEEEEEEE
Confidence 123344566555533 2456788999877421 11111111111 1356778888774333334
Q ss_pred eCC--eEEEEEcCCCc-eeee-eecCCCCcCeeEEEECCCCCEE-EEEEc---CCeEEEEEcCCCee
Q 001248 971 HET--QLAIFETTKLE-CVKQ-WVPRESSAPITHATFSCDSQLV-YACFL---DATVCVFSAANLKL 1029 (1114)
Q Consensus 971 ~d~--~i~iwd~~~~~-~~~~-~~~~~h~~~v~~l~~s~dg~~l-~s~s~---Dg~I~vwd~~~~~~ 1029 (1114)
.++ .+.++++.+++ .... +.... .+.+....+++++..+ ++.+. -+.++.+|+. ++.
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~ 432 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HEL 432 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCE
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcE
Confidence 555 57788877664 2333 32222 2456667777877654 44433 2578888887 543
No 370
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.44 E-value=5.9 Score=50.47 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=34.4
Q ss_pred CeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEEeCCCc
Q 001248 997 PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1037 (1114)
Q Consensus 997 ~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~ 1037 (1114)
.+.+++..++..+|++-+.|+++|||++.+++++.......
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~ 279 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQ 279 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhh
Confidence 45566677899999999999999999999999998866433
No 371
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=52.92 E-value=56 Score=28.26 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=49.6
Q ss_pred HHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCC
Q 001248 15 FLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHD 89 (1114)
Q Consensus 15 ~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~ 89 (1114)
++...-|.++...+++=-.+..+ ...=.-....|+|++|+..+......+... ....+ ..=.=+...|+
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~----~lg~~~~~~~~ 96 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--IKGYI----RKAACLVAMRE 96 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH----HHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--hHHHH----HHHHHHHHCCC
Confidence 44555577777777664333222 122233455688888888777653222111 11111 11122345678
Q ss_pred HHHHHHHHHhhcccccccCHHHHHHHHHH
Q 001248 90 RAKAVEILVKDLKVFSTFNEELFKEITQL 118 (1114)
Q Consensus 90 ~~~A~~~l~~~l~~~~~~~~~~~~~l~~l 118 (1114)
.++|+..+++-+. +.+.+++-...|..+
T Consensus 97 ~~~A~~~~~~al~-l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 97 WSKAQRAYEDALQ-VDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HCcCCHHHHHHHHHh
Confidence 8888888876544 223344555555444
No 372
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=51.49 E-value=97 Score=39.26 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=32.4
Q ss_pred ceeEEEecCCCCEEEEEeCCCeEEEEECCCcceEEEecc
Q 001248 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 576 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
.+..++..++..++++.+.|+++|+|++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 344455667788999999999999999999999988754
No 373
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=49.79 E-value=2.4e+02 Score=29.33 Aligned_cols=202 Identities=12% Similarity=0.103 Sum_probs=108.5
Q ss_pred CCccEEEEeeCCCEEE-EEeCCeEEEE---EcCC------Cccccc---cCCCCCCeEEEEEecC--CCcEEEEEeCCCc
Q 001248 819 EAVPCFALSKNDSYVM-SASGGKISLF---NMMT------FKTMAT---FMPPPPAATFLAFHPQ--DNNIIAIGMDDSS 883 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~-~~~dg~i~iw---d~~~------~~~~~~---~~~~~~~i~~l~~sp~--d~~~la~g~~dg~ 883 (1114)
..+..+........|+ ..+.|.++-. ++.. |..+.. +. ....|.++..-++ +..++++.+.+|.
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 3444444444444444 4446775544 4432 222211 22 2345655544331 4678999999999
Q ss_pred EEEEEcccc-------eEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCC--CCccc----c-ccccccCCCCC
Q 001248 884 IQIYNVRVD-------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD--GWEKQ----K-NRFLQIPTGRT 949 (1114)
Q Consensus 884 v~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~--~~~~~----~-~~~~~~~~~~~ 949 (1114)
|+--.+... .....++. .+.+..+........|+..+..|.+..+.+. .-... . ...+....+
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~-- 197 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNID-- 197 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTT--
T ss_pred EEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCC--
Confidence 999887652 22223443 3556666555566788888999998888776 21110 1 111221111
Q ss_pred CCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCc-------eeeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEE
Q 001248 950 PTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1021 (1114)
Q Consensus 950 ~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~v 1021 (1114)
..|..+...+++.+++. +..|.++.-.+.... -+..+....-.+.+..+....+...++..+.+|.+.-
T Consensus 198 ---d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir 274 (327)
T 3uc1_A 198 ---DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIR 274 (327)
T ss_dssp ---CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEE
T ss_pred ---CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEE
Confidence 24555555555545544 788888877654322 2222222121234555544445556666777888877
Q ss_pred EEcCCC
Q 001248 1022 FSAANL 1027 (1114)
Q Consensus 1022 wd~~~~ 1027 (1114)
++...-
T Consensus 275 ~~~~~i 280 (327)
T 3uc1_A 275 TAARQV 280 (327)
T ss_dssp EEGGGS
T ss_pred Eehhhc
Confidence 776543
No 374
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=49.58 E-value=94 Score=32.45 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=18.1
Q ss_pred HHHHHHHhhccCH---HHHHHHhccC
Q 001248 38 MKYFEDEVHNGNW---DDVEKYLSGF 60 (1114)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~~~~~ 60 (1114)
+.+|++.|.+|+| =+|-+.+..+
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi 41 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV 41 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH
Confidence 6789999999999 7776655544
No 375
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=48.99 E-value=7.1 Score=35.38 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 001248 71 KIFFEIRKQKYLEALDKHDRAKAVEILVK 99 (1114)
Q Consensus 71 ~~~~~l~~~~~lell~~~~~~~A~~~l~~ 99 (1114)
.++|-|+-+.||||+..| .++|..++.+
T Consensus 34 ~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~ 61 (148)
T 2j49_A 34 YIMYPIFIYLFLNLVAKN-PVYARRFFDR 61 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHH
Confidence 399999999999999999 9999999874
No 376
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=48.96 E-value=99 Score=32.01 Aligned_cols=108 Identities=10% Similarity=0.185 Sum_probs=55.9
Q ss_pred HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhccc-ccccCHHHHHHHH
Q 001248 38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKV-FSTFNEELFKEIT 116 (1114)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~-~~~~~~~~~~~l~ 116 (1114)
...|++.|-+|+|=||-+.+..+ +..++.++++.+|+.+|.+-..- +...+...--.|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl--------------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI--------------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH--------------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 67899999999999996666544 33334445555555555543221 2222233333444
Q ss_pred HHhccccccchhhhccCCCChHHHHHHHHHHHhhcccCCCcccccCCCCCchhHHHHHHHHhHHHHHh
Q 001248 117 QLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQ 184 (1114)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~Q~~ 184 (1114)
.++... .+. ....-...++.+|.+.+. .+|++. + ...++++.|++|=..
T Consensus 77 ~llvev-~~~----~~~~~~~~~~~rl~~l~~-~~p~~~------------~-~r~~fi~~ai~WS~~ 125 (312)
T 2wpv_A 77 FYLLEV-YDL----AEVKVDDISVARLVRLIA-ELDPSE------------P-NLKDVITGMNNWSIK 125 (312)
T ss_dssp HHHHHH-HHH----TTCCCSHHHHHHHHHHHT-TCCTTC------------T-THHHHHHHHHHHHHH
T ss_pred HHHHHH-HHH----cCCCCCHHHHHHHHHHHH-HCCCCC------------c-hHHHHHHHHHHHHhh
Confidence 443311 111 111123455666664443 344422 1 247777888888655
No 377
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=47.67 E-value=2.6e+02 Score=29.05 Aligned_cols=202 Identities=7% Similarity=0.022 Sum_probs=100.7
Q ss_pred CCccEEEEeeCCCEEE-EEeCCeEEEEEc---CC------Cccccc-cCC-CCCCeEEEEEecC--CCcEEEEEeCCCcE
Q 001248 819 EAVPCFALSKNDSYVM-SASGGKISLFNM---MT------FKTMAT-FMP-PPPAATFLAFHPQ--DNNIIAIGMDDSSI 884 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~-~~~dg~i~iwd~---~~------~~~~~~-~~~-~~~~i~~l~~sp~--d~~~la~g~~dg~v 884 (1114)
..+..+........|+ ..+.|.+.-+.. .. |..+.. +.- ....|.++..-++ ++.+|+.++.+|.+
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~i 118 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMV 118 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEE
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeE
Confidence 3444444444444444 444787555543 22 222222 111 2234665433331 25678889999999
Q ss_pred EEEEccc--------ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-----ccccccCCCCCCC
Q 001248 885 QIYNVRV--------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-----NRFLQIPTGRTPT 951 (1114)
Q Consensus 885 ~iwd~~~--------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~-----~~~~~~~~~~~~~ 951 (1114)
+-..+.. |.....+..- +.+..+....+...|+..+.+|.+..++...-.... ...+....+
T Consensus 119 Krt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~---- 193 (323)
T 1wp5_A 119 KKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEG---- 193 (323)
T ss_dssp EEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTT----
T ss_pred EEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCC----
Confidence 9988753 2222233322 566666665566778888999998888875421111 111222111
Q ss_pred CCCceEEEEccCCc--EEEEEeCCeEEEEEcCCC-------ceeeeee-cCCCCcCeeEEEECCCCCEEEEEEcCCeEEE
Q 001248 952 AQSDTRVQFHQDQI--HFLVVHETQLAIFETTKL-------ECVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCV 1021 (1114)
Q Consensus 952 ~~~i~~v~fspdg~--~l~~~~d~~i~iwd~~~~-------~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~v 1021 (1114)
..|..+..-+++. +++++..|..+..++..- +-+..+. .......+..+....++..++..+..|.+..
T Consensus 194 -d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir 272 (323)
T 1wp5_A 194 -DYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIET 272 (323)
T ss_dssp -CCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEE
T ss_pred -CEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEE
Confidence 2455554433343 444477777776665431 1111121 1111224443333233444555666777666
Q ss_pred EEcCC
Q 001248 1022 FSAAN 1026 (1114)
Q Consensus 1022 wd~~~ 1026 (1114)
..++.
T Consensus 273 ~~~~~ 277 (323)
T 1wp5_A 273 IKVGD 277 (323)
T ss_dssp EEGGG
T ss_pred EEhhh
Confidence 66554
No 378
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.31 E-value=50 Score=37.88 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=43.7
Q ss_pred CceEEEEccCCcEEEEEeC-------------CeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE
Q 001248 954 SDTRVQFHQDQIHFLVVHE-------------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 954 ~i~~v~fspdg~~l~~~~d-------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s 1014 (1114)
..-.|+|+|+|+++++... ..+.+.+..+++..+.+.. ....+++.++|+||++.|++.-
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEEE
Confidence 4578999999997666321 2466677777777665553 3467999999999999988663
No 379
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=44.47 E-value=64 Score=36.50 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=43.9
Q ss_pred CCceEEEEccCCcEEEEEe-------------CCeEEEEEcCCCceeeeeecCCCCcCeeEEEECCCCCEEEEEE
Q 001248 953 QSDTRVQFHQDQIHFLVVH-------------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1114)
Q Consensus 953 ~~i~~v~fspdg~~l~~~~-------------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~s 1014 (1114)
.....|+|.++|.+.++.. ...+..++..+++..+.+.. .....++.++||||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEECCCCCEEEEEE
Confidence 3568899999999887421 12577777777776555431 2245799999999999988765
No 380
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=44.36 E-value=20 Score=28.37 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHhcCCC
Q 001248 7 ELVFLILQFLDEEKFKETVHKLEQESGFF 35 (1114)
Q Consensus 7 ~v~~li~q~L~~~g~~~s~~~l~~Esg~~ 35 (1114)
-+.-||-.||.=.||+=|+..|+-|+|..
T Consensus 20 Li~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 20 LVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 47789999999999999999999999986
No 381
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=42.34 E-value=97 Score=31.71 Aligned_cols=84 Identities=15% Similarity=0.033 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhcC-HHHHHHHHHH--hcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHH
Q 001248 6 RELVFLILQFLDEEK-FKETVHKLEQ--ESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIR 77 (1114)
Q Consensus 6 ~~v~~li~q~L~~~g-~~~s~~~l~~--Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (1114)
-+.++++.+++...| +.++.+.|++ +.++..+ ...=.-....|++++|+..+.. +.+. .+.+.+-
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~---~~~~~l~ 137 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSL---ECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSH---HHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCH---HHHHHHH
Confidence 346677778877777 7777777776 3332222 1112344567888888888887 1111 1111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhh
Q 001248 78 KQKYLEALDKHDRAKAVEILVKD 100 (1114)
Q Consensus 78 ~~~~lell~~~~~~~A~~~l~~~ 100 (1114)
+ =++..|+.++|+..+++-
T Consensus 138 -~---~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 138 -Q---ILLKLDRLDLARKELKKM 156 (291)
T ss_dssp -H---HHHHTTCHHHHHHHHHHH
T ss_pred -H---HHHHCCCHHHHHHHHHHH
Confidence 1 134467777777777654
No 382
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=38.79 E-value=3.9e+02 Score=28.50 Aligned_cols=288 Identities=10% Similarity=0.115 Sum_probs=125.2
Q ss_pred CCcccccccCCCceeEEEeccCCCCccc--cccccCc---cccccceEEEEEccCcceeeecccCceEEEEeecccccCC
Q 001248 713 DVKPRITEESNDKSKVWKLTELSEPNQC--RSLRLPE---NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 787 (1114)
Q Consensus 713 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~--~~~~~~~---~~~~~~i~~l~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 787 (1114)
..+.++.-..|+.+..|=.+........ .....|. ......+..++. .....++...+|.|+.|-.....+.-
T Consensus 9 ~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG 86 (389)
T 3kci_A 9 SGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLG 86 (389)
T ss_dssp ------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTS
T ss_pred CcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCC
Confidence 3455666677889999976653322210 0000000 001123444433 33445666778888888644321111
Q ss_pred CCCccccccccccCCCCCccccccCCCCCCCCCccEEEEeeCCCEEEEEe-CCeEEEEEcCCCccc-----------ccc
Q 001248 788 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM-----------ATF 855 (1114)
Q Consensus 788 ~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~~~~~-----------~~~ 855 (1114)
.+.......+ ..+.. + ....+..++++......+.-. +|.|..|-......+ ..+
T Consensus 87 ~g~~~~~~~p--------~~v~~-~----~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 153 (389)
T 3kci_A 87 IGGTESVSTP--------TLLES-I----QHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVI 153 (389)
T ss_dssp SSSSCCEEEE--------EECGG-G----TTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEEC
T ss_pred CCCcCCccCC--------EEccc-c----cCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEe
Confidence 1100000000 00000 0 122344455555444444444 788888865321111 111
Q ss_pred CC-CCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-ce----------EEEeecc-cccCeeEEEEcCCCCEEEEEeC
Q 001248 856 MP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DE----------VKSKLKG-HSKRITGLAFSHALNVLVSSGA 922 (1114)
Q Consensus 856 ~~-~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~-~~----------~~~~l~~-h~~~V~~l~~s~d~~~l~s~s~ 922 (1114)
.. ....|..++. +..+.+.-..||.|+.|-... ++ ....+.. ....|..++........+....
T Consensus 154 ~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~ 230 (389)
T 3kci_A 154 ESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTD 230 (389)
T ss_dssp GGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEET
T ss_pred cccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEcc
Confidence 11 1224666655 445566677899999997543 11 0111111 2235667766543356666778
Q ss_pred CCcEEEEeCCCCcccc-------ccc--cccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcCCCcee-------
Q 001248 923 DSQLCVWSSDGWEKQK-------NRF--LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV------- 986 (1114)
Q Consensus 923 D~~v~iwd~~~~~~~~-------~~~--~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~~~~~~------- 986 (1114)
|+.|..|-........ ..+ +..+.+ ..|..++... ...++...++.|..|-....-.+
T Consensus 231 ~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-----~~v~~v~~G~-~hs~alt~~G~v~~wG~n~~GqLG~g~~~~ 304 (389)
T 3kci_A 231 DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-----LGVVKVECGS-QFSVALTKSGAVYTWGKGDYHRLGHGSDDH 304 (389)
T ss_dssp TTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT-----SCEEEEEEET-TEEEEEETTSCEEEEECCGGGTTCSSSCCC
T ss_pred CCEEEEEeCCCCCCCCCCCCCCccccEEecccCC-----CcEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCCCCCCCCcc
Confidence 9999999755321110 001 111110 1233333222 22334467888999875432111
Q ss_pred ---eeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 987 ---KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 987 ---~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
......-....|..++.. ..+.++...||.|+.|=...
T Consensus 305 ~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 305 VRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred ccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCCC
Confidence 000000112346666543 33445557899999997654
No 383
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=38.70 E-value=3.4e+02 Score=27.85 Aligned_cols=162 Identities=9% Similarity=0.041 Sum_probs=85.1
Q ss_pred CCCeEEEEEec--CCCcEEEEEeCCCcEEEEEccc-------ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 001248 859 PPAATFLAFHP--QDNNIIAIGMDDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929 (1114)
Q Consensus 859 ~~~i~~l~~sp--~d~~~la~g~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iw 929 (1114)
...|.++..-+ .++.+++..+.+|.++--.+.. |.....+..+ +.+..+....+...++..+.+|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf 172 (307)
T 1zi0_A 94 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRF 172 (307)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEE
Confidence 33466554321 1456788899999999988753 2222334444 566666665556678888899988888
Q ss_pred eCCCCcccc-----ccccccCCCCCCCCCCceEEEEccCCcEEEE-EeCCeEEEEEcCCCc-------eeeeeecCCCCc
Q 001248 930 SSDGWEKQK-----NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE-------CVKQWVPRESSA 996 (1114)
Q Consensus 930 d~~~~~~~~-----~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~-~~d~~i~iwd~~~~~-------~~~~~~~~~h~~ 996 (1114)
+...-.... ...+....+ ..|..+....++..+++ +..|.++-.++..-. -+..+....-.+
T Consensus 173 ~~~~v~~~gr~a~Gv~~i~L~~~-----d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~ 247 (307)
T 1zi0_A 173 KESSVRAMGCNTTGVRGIRLGEG-----DKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNG 247 (307)
T ss_dssp EGGGSCBCCTTCCCEECCCCCTT-----CCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTC
T ss_pred EHHHcCccCCCCCCeEeEEeCCC-----CEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCC
Confidence 775421111 011111111 24555544444444444 677777777653221 111111111124
Q ss_pred CeeEEEECCCCCEEEEEEcCCeEEEEEcCC
Q 001248 997 PITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 997 ~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~ 1026 (1114)
.+..+....+..-|+..+.+|.+.-+++..
T Consensus 248 ~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 248 LVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 444444433344455566666666555544
No 384
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=38.08 E-value=3.6e+02 Score=27.94 Aligned_cols=190 Identities=8% Similarity=0.074 Sum_probs=106.8
Q ss_pred eCCCEEEEEe-CCeEEEEEcCCCcc----ccccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc---------ce
Q 001248 828 KNDSYVMSAS-GGKISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---------DE 893 (1114)
Q Consensus 828 ~d~~~l~~~~-dg~i~iwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~---------~~ 893 (1114)
|+..++++.+ +|.|+--.+.+.+. -..+.. ...+..+.... ....|+..++.|.++-+.... |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 3555667777 89888776543211 112332 23454554444 456677788899887776532 22
Q ss_pred EEEe---ecccccCeeEEEEcC---CCCEEEEEeCCCcEEEEeCCCCcccc----ccccccCCCCCCCCCCceEEEEcc-
Q 001248 894 VKSK---LKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQK----NRFLQIPTGRTPTAQSDTRVQFHQ- 962 (1114)
Q Consensus 894 ~~~~---l~~h~~~V~~l~~s~---d~~~l~s~s~D~~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~i~~v~fsp- 962 (1114)
.+.. +. ....|.++..-+ ++.+|+.++.+|.++...+....... ...+....+ +.+..+....
T Consensus 81 ~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~ 154 (323)
T 1wp5_A 81 HIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDG 154 (323)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECS
T ss_pred ChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCC
Confidence 2211 22 223466554333 26789999999999998876433211 112222222 2344444443
Q ss_pred CCcEEEEEeCCeEEEEEcCCCc-------eeeeeecCCCCcCeeEEEECCCCC-EEEEEEcCCeEEEEEcCC
Q 001248 963 DQIHFLVVHETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFSAAN 1026 (1114)
Q Consensus 963 dg~~l~~~~d~~i~iwd~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~s~Dg~I~vwd~~~ 1026 (1114)
+...++.+.+|.+..+....-. -++.+.... ...|.++...+++. .|++.+..|..+..++..
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 4445555888988888765322 122222222 45566665444455 788888999988887755
No 385
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=37.78 E-value=1.2e+02 Score=26.07 Aligned_cols=100 Identities=11% Similarity=0.106 Sum_probs=49.0
Q ss_pred HHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCc-cccCcccchhhHHHHHHHHHHHHHhcC
Q 001248 15 FLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFEIRKQKYLEALDKH 88 (1114)
Q Consensus 15 ~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~lell~~~ 88 (1114)
+....-|.++...+++=-.+..+ ...=.-....|+|++|+..+.... ..+........+-.++...=.-+...+
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~ 97 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN 97 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcC
Confidence 34444577777777654333322 112233456788888888877652 222111000011112211112234568
Q ss_pred CHHHHHHHHHhhcccccccCHHHHHHHH
Q 001248 89 DRAKAVEILVKDLKVFSTFNEELFKEIT 116 (1114)
Q Consensus 89 ~~~~A~~~l~~~l~~~~~~~~~~~~~l~ 116 (1114)
++++|+..+++-|.-. .+++.+..|.
T Consensus 98 ~~~~A~~~~~kal~~~--~~~~~~~~l~ 123 (127)
T 4gcn_A 98 DLSLAVQWFHRSLSEF--RDPELVKKVK 123 (127)
T ss_dssp CHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--cCHHHHHHHH
Confidence 8888888887665421 2444444443
No 386
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=36.49 E-value=64 Score=36.99 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=41.7
Q ss_pred CeEEEEEecCCCcEEEEEeCC------------CcEEEEEcccceEEEeeccc-ccCeeEEEEcCCCCEEEEE
Q 001248 861 AATFLAFHPQDNNIIAIGMDD------------SSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSS 920 (1114)
Q Consensus 861 ~i~~l~~sp~d~~~la~g~~d------------g~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~ 920 (1114)
..--|+|+| .|++++.-..+ ..+.+.+..++++..-+.++ ..+++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 356689999 77766543322 24566677778776666664 4689999999999988765
No 387
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=36.13 E-value=5.1e+02 Score=29.14 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=29.1
Q ss_pred EEecCCCeEEee--ecccceeEEEecCCC--CEEEEEeCCC----eEEEEECCCcceEEEecc
Q 001248 560 AYSADGTRTYQG--FRKRSLGVVQFDTTK--NRFLAAGDDF----SIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 560 ~~s~~g~~~~~~--~~~~~v~~~~~~~~~--~~l~~~~~dg----~i~iwd~~~~~~~~~~~~ 614 (1114)
.+..+|+.++.. .+...+.+..|.|+. ..++.+.+++ -..+.|..+|+.+.....
T Consensus 347 ~iD~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~ 409 (591)
T 2zux_A 347 AVDHDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYA 409 (591)
T ss_dssp EECTTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECC
T ss_pred EECCCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCC
Confidence 344445444332 223355666666663 3555555431 344567777777766654
No 388
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=35.57 E-value=1.9e+02 Score=24.09 Aligned_cols=89 Identities=8% Similarity=-0.036 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHH
Q 001248 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (1114)
Q Consensus 8 v~~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 82 (1114)
...+-..++...-|.++...+++=.....+ ...-.-....|+|++|+.++.......... ..+.+.+- .
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la----~ 92 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRKA----A 92 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH----H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHHH----H
Confidence 445555566666688888877775544332 222233456789999988887763222111 11222111 1
Q ss_pred HHHhcCCHHHHHHHHHhhcc
Q 001248 83 EALDKHDRAKAVEILVKDLK 102 (1114)
Q Consensus 83 ell~~~~~~~A~~~l~~~l~ 102 (1114)
-+...++.++|+..+++-+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 12456888888888876543
No 389
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=35.37 E-value=94 Score=35.19 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=43.1
Q ss_pred CCeEEEEEecCCCcEEEEEeC------------CCcEEEEEcccceEEEeeccc-ccCeeEEEEcCCCCEEEEEe
Q 001248 860 PAATFLAFHPQDNNIIAIGMD------------DSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSG 921 (1114)
Q Consensus 860 ~~i~~l~~sp~d~~~la~g~~------------dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s 921 (1114)
.....|+|++ +|.+.+.... ...|+.++..++++...+.+. ..+++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3467899999 7776663221 125777777778776666543 45789999999999888663
No 390
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=35.13 E-value=3.9e+02 Score=27.43 Aligned_cols=236 Identities=9% Similarity=0.058 Sum_probs=123.5
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCcccc---------ccCCCCCCeEEEEEecCCCcEEEEEeCCCcEEEEEccc-------
Q 001248 829 NDSYVMSAS-GGKISLFNMMTFKTMA---------TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV------- 891 (1114)
Q Consensus 829 d~~~l~~~~-dg~i~iwd~~~~~~~~---------~~~~~~~~i~~l~~sp~d~~~la~g~~dg~v~iwd~~~------- 891 (1114)
+..++++.+ +|.|+--.+.+.+..+ .+. ....+..+.... ....|+..+..|.++-+....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 445666666 8888877665432211 122 223344444444 455677778889877776532
Q ss_pred --ceEEE---eecccccCeeEEEEc---CCCCEEEEEeCCCcEEEEeCCCCcccc---ccccccCCCCCCCCCCceEEEE
Q 001248 892 --DEVKS---KLKGHSKRITGLAFS---HALNVLVSSGADSQLCVWSSDGWEKQK---NRFLQIPTGRTPTAQSDTRVQF 960 (1114)
Q Consensus 892 --~~~~~---~l~~h~~~V~~l~~s---~d~~~l~s~s~D~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~i~~v~f 960 (1114)
|..+. .+. ....|.++... .++.+++.++..|.++--.+....... ...+....+ +.+..+..
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-----d~lv~~~~ 153 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-----DELIGVDL 153 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-----CCEEEEEE
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-----CEEEEEEE
Confidence 22221 122 23456665442 356789999999999998876432211 112222222 23444444
Q ss_pred -ccCCcEEEEEeCCeEEEEEcCCCce-------eeeeecCCCCcCeeEEEECCCCCEEEEEEcCCeEEEEEcCCCeeeEE
Q 001248 961 -HQDQIHFLVVHETQLAIFETTKLEC-------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1032 (1114)
Q Consensus 961 -spdg~~l~~~~d~~i~iwd~~~~~~-------~~~~~~~~h~~~v~~l~~s~dg~~l~s~s~Dg~I~vwd~~~~~~~~~ 1032 (1114)
..+...++.+.+|.+..+....-.. ++.+... ....|.++....++..|++.+..|.++-.++.......+
T Consensus 154 ~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~R 232 (307)
T 1zi0_A 154 TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSR 232 (307)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCT
T ss_pred eCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCC
Confidence 3444555558888888887643221 1222222 245677776666667888899999999888754332111
Q ss_pred ----eCCCcccCCCCCCCCccceEEEecCCCCCeEEEEeCCCcEEEEeccC
Q 001248 1033 ----INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1079 (1114)
Q Consensus 1033 ----~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~l~s~~~Dg~v~vW~i~~ 1079 (1114)
..... +..+ ...+ +.+.... +...|+..+.+|.+.-..+.+
T Consensus 233 g~kG~~~~~-~~~~--~~~l--v~~~~v~-~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 233 ATKGVISIK-VTER--NGLV--VGAVQVD-DCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TSCCEESSC-CCTT--TCSE--EEEEEEC-TTCEEEEEESSCCEEEEEGGG
T ss_pred CCCCEEeeE-ecCC--CCeE--EEEEEeC-CCceEEEEcCCCcEEEEeccc
Confidence 00000 1111 1112 1232222 235566777788877766655
No 391
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.88 E-value=1.7e+02 Score=29.76 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=8.8
Q ss_pred HhhccCHHHHHHHhccC
Q 001248 44 EVHNGNWDDVEKYLSGF 60 (1114)
Q Consensus 44 ~i~~g~w~~~~~~~~~~ 60 (1114)
....|++++|+..+..+
T Consensus 140 ~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 33445555555555554
No 392
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=33.78 E-value=1.4e+02 Score=26.42 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCc-cccCcccchhhHHHHHHHHHHHHHhcCCHHHHH
Q 001248 21 FKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAV 94 (1114)
Q Consensus 21 ~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~lell~~~~~~~A~ 94 (1114)
+.++.+.+++-.....+ ...=+-....|+|++|++++.+.. ..+++. .+.+.+ = .=+...++.++|+
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~---~a~~~l-g---~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP---KAHRFL-G---LLYELEENTDKAV 85 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHH-H---HHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH-H---HHHHHcCchHHHH
Confidence 45566666665444332 122234567899999999999863 333221 122221 1 1234579999999
Q ss_pred HHHHhhcccccccCHHHHHHHHHHhcc
Q 001248 95 EILVKDLKVFSTFNEELFKEITQLLTL 121 (1114)
Q Consensus 95 ~~l~~~l~~~~~~~~~~~~~l~~l~~~ 121 (1114)
..+++.+. +.+.+++-+..|..++..
T Consensus 86 ~~~~~al~-~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 86 ECYRRSVE-LNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 99987654 333466777777776543
No 393
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=31.09 E-value=2.3e+02 Score=33.05 Aligned_cols=30 Identities=20% Similarity=0.509 Sum_probs=27.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCcceEEEecc
Q 001248 585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDA 614 (1114)
Q Consensus 585 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 614 (1114)
+..++++.+.|..+|+|++.+++++.....
T Consensus 230 ~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 230 HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 467999999999999999999999888765
No 394
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=30.98 E-value=5e+02 Score=27.47 Aligned_cols=158 Identities=11% Similarity=0.027 Sum_probs=82.9
Q ss_pred cCCCCeEEEEEecCCcEEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeEEEEeCCCeEEE
Q 001248 367 HPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 446 (1114)
Q Consensus 367 spdg~~ll~tg~~dg~v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~i~i 446 (1114)
-|+.. ++++.+.+|.|+=-.+..-+.... ...-.....+. ..+.+..+........|+..+..|.+.-
T Consensus 4 I~~e~-~~v~lT~~GyIKr~~l~~y~~~~r----------~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~ 71 (370)
T 3l6v_A 4 IAPED-VVVTLSHAGYAKRQPVSAYRAQRR----------GGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFW 71 (370)
T ss_dssp CCCCC-EEEEEESSCEEEEEEHHHHHHTCC----------CCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEE
T ss_pred ccCCC-EEEEEeCCCEEEEeeHHHhhhhcc----------CCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEE
Confidence 45666 477888899988665432110000 00000000122 3456666666666677777778887766
Q ss_pred EEcc---C------CceeeeeEeeccccCCeeEEEecC---CCCeeEEEEecCCCCEEEEeCCCC-------cceeEeec
Q 001248 447 YSYH---G------GDEVRQHLEIDAHVGGVNDIAFSH---PNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEG 507 (1114)
Q Consensus 447 wd~~---~------~~~~~~~~~l~~h~~~V~~v~~s~---d~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~ 507 (1114)
+... . |..+.....+.. ...|.++.... ++. +++.++..|.++...+..- .....+..
T Consensus 72 ~~~~eip~~~r~a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~--~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~ 148 (370)
T 3l6v_A 72 LPVHQLPEAGSNARGRPIINWIPLES-GERVQAVLPVREYADNR--YVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE 148 (370)
T ss_dssp EEGGGSCBCCTTSCCEEGGGSCCCCT-TCCEEEEEEESCCCTTC--EEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT
T ss_pred EEHHHCcCCCcccCCcCHhhccCCCC-CCEEEEEEEeccCCCCc--EEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC
Confidence 5542 1 211111112332 34455554332 344 6888888999998876432 21223332
Q ss_pred cccCEEEEeeccCCCceEEEEEecCCeEEEEEcCC
Q 001248 508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN 542 (1114)
Q Consensus 508 h~~~v~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~ 542 (1114)
.+.+..+.... .+ ..++..+.+|.+..+....
T Consensus 149 -~d~lv~v~~~~-~~-~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 149 -GDALVGVALTD-GD-RDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp -TCCEEEEEEEC-SC-CEEEEEETTSEEEEEEGGG
T ss_pred -CCEEEEEEEeC-CC-ceEEEEeCCCeEEEEEccc
Confidence 34444444332 22 4677788888887776643
No 395
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=28.73 E-value=49 Score=29.08 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHHHhhcCH-HHHHHHHHHhcCCCc
Q 001248 3 SLSRELVFLILQFLDEEKF-KETVHKLEQESGFFF 36 (1114)
Q Consensus 3 ~~~~~v~~li~q~L~~~g~-~~s~~~l~~Esg~~~ 36 (1114)
...+.+...|+..|.+.|| ..+.+.+.++.|++.
T Consensus 19 ~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~ 53 (130)
T 2k9m_A 19 GKEQELALELLNYLNEKGFLSKSVEEISDVLRCSV 53 (130)
T ss_dssp SHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCH
Confidence 3456788899999999998 455667777767654
No 396
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=28.73 E-value=2.5e+02 Score=23.18 Aligned_cols=94 Identities=10% Similarity=0.078 Sum_probs=50.6
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccc-cCcccchhhHHHHHHHHHH
Q 001248 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYL 82 (1114)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~l 82 (1114)
..+-..++...-|.++...+++=.....+ ...-.-....|+|++|+.++...... +...........++...-.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 34444455555677777777654332221 22233445689999999988876222 2111110011222222222
Q ss_pred HHHhcCCHHHHHHHHHhhcc
Q 001248 83 EALDKHDRAKAVEILVKDLK 102 (1114)
Q Consensus 83 ell~~~~~~~A~~~l~~~l~ 102 (1114)
-+...++.++|+..++.-+.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 23567899999998886554
No 397
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=28.12 E-value=3e+02 Score=30.70 Aligned_cols=45 Identities=7% Similarity=-0.006 Sum_probs=22.7
Q ss_pred HhhcCHHHHHHHHH--HhcCCCcc----HHHHHHHhhccCHHHHHHHhccC
Q 001248 16 LDEEKFKETVHKLE--QESGFFFN----MKYFEDEVHNGNWDDVEKYLSGF 60 (1114)
Q Consensus 16 L~~~g~~~s~~~l~--~Esg~~~~----~~~~~~~i~~g~w~~~~~~~~~~ 60 (1114)
.+...+.++.+.|+ ++.|+..+ -..+......|++++|++++..+
T Consensus 116 ~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 116 VAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 33333444444433 24455555 23445555566666666666665
No 398
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=26.47 E-value=36 Score=26.98 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc
Q 001248 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN 37 (1114)
Q Consensus 6 ~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~ 37 (1114)
.++.+=|+++|++.| .++..|.+|-|++..
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 357788889999999 899999999999864
No 399
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=26.10 E-value=2.3e+02 Score=28.64 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=49.2
Q ss_pred HHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHh
Q 001248 12 ILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALD 86 (1114)
Q Consensus 12 i~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~ 86 (1114)
-..++....|.++...+++=.....+ ...-+-.+..|++++|+..+........+. . ...-..-++++.
T Consensus 124 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~----~--~~~~~~~~~l~~ 197 (287)
T 3qou_A 124 AMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT----R--YQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH----H--HHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch----H--HHHHHHHHHHHh
Confidence 33344445566666666554333322 233345566788888888888773332111 1 111222333444
Q ss_pred cCCHHHHHHHHHhhcccccccCHHHHHHHHHHh
Q 001248 87 KHDRAKAVEILVKDLKVFSTFNEELFKEITQLL 119 (1114)
Q Consensus 87 ~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~ 119 (1114)
.++..+|+..+++.+.- ...+++-...|..++
T Consensus 198 ~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l 229 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAE-NPEDAALATQLALQL 229 (287)
T ss_dssp HHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred hcccCccHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence 45555566666544331 122444444555444
No 400
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=25.97 E-value=11 Score=31.75 Aligned_cols=37 Identities=8% Similarity=0.217 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCccHHHHHHHhhccCHHHHHHHhccC
Q 001248 23 ETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60 (1114)
Q Consensus 23 ~s~~~l~~Esg~~~~~~~~~~~i~~g~w~~~~~~~~~~ 60 (1114)
..+..+-+|||+++++.-+-..| +|+||++.+.++.+
T Consensus 36 a~~i~vi~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 36 DRAIEKISSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHHHTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 34555567899999877777766 59999998888765
No 401
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=25.89 E-value=2.9e+02 Score=23.01 Aligned_cols=87 Identities=8% Similarity=0.006 Sum_probs=46.8
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHH
Q 001248 10 FLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEA 84 (1114)
Q Consensus 10 ~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lel 84 (1114)
.+-..++...-|.++...+++=-.+..+ ...=.-....|+|++|+..+.......... ....+.+ -.=+
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l----g~~~ 82 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYIRK----ATAQ 82 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHH----HHHH
Confidence 3344455556677777777664333322 222233456788888888887763222111 1121111 1122
Q ss_pred HhcCCHHHHHHHHHhhcc
Q 001248 85 LDKHDRAKAVEILVKDLK 102 (1114)
Q Consensus 85 l~~~~~~~A~~~l~~~l~ 102 (1114)
...|+.++|+..+++-+.
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 446888888888775543
No 402
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.41 E-value=40 Score=19.44 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHh
Q 001248 6 RELVFLILQFLD 17 (1114)
Q Consensus 6 ~~v~~li~q~L~ 17 (1114)
+||++||-||-.
T Consensus 5 kDvlql~qQy~q 16 (26)
T 1kdl_A 5 KDVLRLIEQYVS 16 (26)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 678888888754
No 403
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=24.93 E-value=2.7e+02 Score=22.33 Aligned_cols=89 Identities=8% Similarity=-0.088 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHH
Q 001248 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYL 82 (1114)
Q Consensus 8 v~~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 82 (1114)
...+...++....|.++...+++=-....+ ...-.-....|+|++|+.++.......... ..+.+.+ -.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~----a~ 80 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRK----AA 80 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHHHH----HH
Confidence 444555566666677777777654322221 222234456788888888887763222111 1111111 11
Q ss_pred HHHhcCCHHHHHHHHHhhcc
Q 001248 83 EALDKHDRAKAVEILVKDLK 102 (1114)
Q Consensus 83 ell~~~~~~~A~~~l~~~l~ 102 (1114)
-+...++..+|+..+++-+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 12456888888888876544
No 404
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=24.66 E-value=2.4e+02 Score=25.19 Aligned_cols=85 Identities=14% Similarity=0.055 Sum_probs=43.8
Q ss_pred HHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHH
Q 001248 11 LILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEAL 85 (1114)
Q Consensus 11 li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell 85 (1114)
+-..++...-|.++...+++=-.+..+ ...=.-....|+|++|+.++.......... ....+.+ -.=+.
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l----g~~~~ 90 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWSRL----GLARF 90 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHH----HHHHH
Confidence 334445555577777777654333222 222234456788888888777653222111 1121111 11124
Q ss_pred hcCCHHHHHHHHHhhc
Q 001248 86 DKHDRAKAVEILVKDL 101 (1114)
Q Consensus 86 ~~~~~~~A~~~l~~~l 101 (1114)
..+++++|+..+++-+
T Consensus 91 ~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGI 106 (164)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 4677888877777543
No 405
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.51 E-value=3.1e+02 Score=22.95 Aligned_cols=56 Identities=5% Similarity=0.112 Sum_probs=30.7
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCceEEEEccCCcEEEEEeCCeEEEEEcC
Q 001248 906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT 981 (1114)
Q Consensus 906 ~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~fspdg~~l~~~~d~~i~iwd~~ 981 (1114)
..+.+..||++++... ++ +|...+... ..-..+.+..+|.+++...++...+|...
T Consensus 22 ~~L~~q~dGnLvl~~~-~~---vW~snt~~~----------------~~~~~l~l~~dGNLVl~~~~~~~~vW~S~ 77 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNE-AG---GFQSNTHGR----------------GVDCTLRLNNRGQLEIHSANSNTPVWVYP 77 (111)
T ss_dssp EEEEECTTSCEEEECS-SC---CEECCCTTS----------------CSSCEEEECTTSCEEEECSSCSSCSEEES
T ss_pred EEEEEccCCeEEEECC-CC---EEECCcccC----------------CcCEEEEEcCCCcEEEEeCCCCEEEEEec
Confidence 4566667777666422 22 776554110 01245677888887776544444466443
No 406
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=24.21 E-value=3.1e+02 Score=27.52 Aligned_cols=95 Identities=9% Similarity=-0.014 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc---H----H----HHHHHhhccCHHHHHHHhccC-ccccCcccchhhHH
Q 001248 7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---M----K----YFEDEVHNGNWDDVEKYLSGF-TKVDDNRYSMKIFF 74 (1114)
Q Consensus 7 ~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~---~----~----~~~~~i~~g~w~~~~~~~~~~-~~~~~~~~~~~~~~ 74 (1114)
++...+..++....|.++.+.+++.-..... . . .-.-....|++++|+.++.+. ......... ....
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-YQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT-THHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch-HHHH
Confidence 3456677778888899988877654332211 0 0 111235578999999987664 221111111 1223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 001248 75 EIRKQKYLEALDKHDRAKAVEILVKDLK 102 (1114)
Q Consensus 75 ~l~~~~~lell~~~~~~~A~~~l~~~l~ 102 (1114)
.++...-.-+...+++++|+..+++.+.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555678999999999887663
No 407
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=23.94 E-value=3.8e+02 Score=25.36 Aligned_cols=106 Identities=8% Similarity=0.016 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCc-cccCcccchhhHHHHHHHHH
Q 001248 8 LVFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFEIRKQKY 81 (1114)
Q Consensus 8 v~~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 81 (1114)
...+-..++...-|.++...+++-.....+ ...=.-....|++++|+..+.+.. ..|+.. ...+.+ =..+
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~l-g~~~ 83 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL---GGYMVL-SEAY 83 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHH-HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHH-HHHH
Confidence 444555566666688888888887665543 222234566899999999998863 333221 122221 1112
Q ss_pred HHH--------HhcCCHHHHHHHHHhhcccccccCHHHHHHHHHH
Q 001248 82 LEA--------LDKHDRAKAVEILVKDLKVFSTFNEELFKEITQL 118 (1114)
Q Consensus 82 lel--------l~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l 118 (1114)
..+ +..|+.++|+..+++-+. +.+.++.-+..+..+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~P~~~~~~~~lg~~ 127 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAER-VNPRYAPLHLQRGLV 127 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHH-hCcccHHHHHHHHHH
Confidence 221 112778889888886544 222244444444444
No 408
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=22.72 E-value=8.5e+02 Score=27.39 Aligned_cols=179 Identities=13% Similarity=0.081 Sum_probs=90.5
Q ss_pred CCCCceEEEEcCCCCeEEEEEecCCc----------------------------EEEEEcCCcceeEEeeeeeeccCCCC
Q 001248 357 QGSSPMSMDFHPVQQTLLLVGTNVGD----------------------------IGLWEVGSRERLVLRNFKVWDLGACS 408 (1114)
Q Consensus 357 h~~~v~~v~~spdg~~ll~tg~~dg~----------------------------v~iwd~~~~~~~~~~~~~~~d~~~~~ 408 (1114)
|-..+....|.-||+.=++..+.+|+ +.|+|=.+|+.+...++..-.-
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg---- 252 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARG---- 252 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCC----
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCC----
Confidence 55678888888898765777766665 7788888887776533210000
Q ss_pred ccccccc--ccCCCC--CeeEEEEcCCCC--eEEEEe---CCCeEEEEEccCCceeeeeEeeccc-----------cCCe
Q 001248 409 MPLQAAL--VKDPGV--SVNRVIWSPDGS--LFGVAY---SRHIVQIYSYHGGDEVRQHLEIDAH-----------VGGV 468 (1114)
Q Consensus 409 ~~~~~~~--~~~h~~--~V~~l~~spdg~--~las~~---~dg~i~iwd~~~~~~~~~~~~l~~h-----------~~~V 468 (1114)
.... . --++.. -..++++- ||+ .++.+- ....|..||..+++.. ..-.+... ...+
T Consensus 253 -~~~~-WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~-~~W~~d~~~~~~~~~~gqg~h~~ 328 (591)
T 2zux_A 253 -NVSD-WGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLS-KLWTLDSSKSGNEAFAGQGNHNL 328 (591)
T ss_dssp -CGGG-GTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEE-EEEEEETTSTTCGGGSSCCCSCC
T ss_pred -cccc-cccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceE-EEEEecCCCCCcccccccCCCCC
Confidence 0000 0 000000 01223321 222 222221 1234777777766432 11122110 1234
Q ss_pred eEEEecCCCCeeEEEEecCCCCEEEEeCCCCcceeEe-eccccCEEEEeeccCCCceEEEEEecCC----eEEEEEcCCC
Q 001248 469 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDG----KIKAWLYDNL 543 (1114)
Q Consensus 469 ~~v~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d~----~i~~wd~~~~ 543 (1114)
....+.-||+. -|+.|+. ++| .+|+.+... .+|...+....|.|+..|.-++.+..++ -..+.|..++
T Consensus 329 ~vaDVDgDG~d-EIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG 401 (591)
T 2zux_A 329 SIADVDGDGKD-EIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATG 401 (591)
T ss_dssp EEECCSSSSSC-EEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTC
T ss_pred eeEeCCCCCCc-eEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCC
Confidence 45556667776 4555542 333 344444433 3687777777777766566666665541 2445677766
Q ss_pred CCeeeec
Q 001248 544 GSRVDYE 550 (1114)
Q Consensus 544 ~~~~~~~ 550 (1114)
+.+....
T Consensus 402 ~vlw~~~ 408 (591)
T 2zux_A 402 KILWGVY 408 (591)
T ss_dssp CEEEEEC
T ss_pred cEEEEcC
Confidence 6665443
No 409
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=22.25 E-value=51 Score=25.68 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=26.1
Q ss_pred CcchHHHHHHHHHHHhhcCH-HHHHHHHHHhcCCCc
Q 001248 2 SSLSRELVFLILQFLDEEKF-KETVHKLEQESGFFF 36 (1114)
Q Consensus 2 ~~~~~~v~~li~q~L~~~g~-~~s~~~l~~Esg~~~ 36 (1114)
+.-.+.+...|+..|.+.|| ..+...+.++.|+..
T Consensus 27 ~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~ 62 (76)
T 2k9l_A 27 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSV 62 (76)
T ss_dssp CTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCH
Confidence 34456789999999999998 455666766767655
No 410
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=21.92 E-value=9e+02 Score=27.36 Aligned_cols=227 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred cCCCCeE------EEEEecCCc-----EEEEEcCCcceeEEeeeeeeccCCCCcccccccccCCCCCeeEEEEcCCCCeE
Q 001248 367 HPVQQTL------LLVGTNVGD-----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF 435 (1114)
Q Consensus 367 spdg~~l------l~tg~~dg~-----v~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 435 (1114)
.|+|+.+ ++.|.-||. |..|+..+.+... ..+-++.+.-.+|.-+|+.|
T Consensus 108 ~p~g~t~~y~and~sVgDLDGDG~~EIVv~~d~~n~~d~s--------------------~~g~tg~~~l~aY~ldG~~L 167 (620)
T 2zuy_A 108 TPDGKPYTYSANDASVGDIDGDGEYEMILKWDPSNSKDNA--------------------HDGYTGEVLIDAYKLDGTFL 167 (620)
T ss_dssp CTTSCEECEEEEEEEEECSSSSSSCEEEEEEEETTCCCTT--------------------SCCCCCCCEEEEECTTSCEE
T ss_pred CCCCcCcceecCCCeEEecCCCCCeEEEEEECCCcccccc--------------------ccccCCCcEEEEEECCCCEE
Q ss_pred EEEeCCCeEEEEEccCCceeeeeEeeccccCCeeEEEecCCCCeeEEEEecCCCCE------------------------
Q 001248 436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI------------------------ 491 (1114)
Q Consensus 436 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i------------------------ 491 (1114)
|.+..+..+. ...|-..+....|.-||+. -++....++++
T Consensus 168 -----------W~idlg~Ni~----aGahyt~~~V~DlDGDGka-EIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G 231 (620)
T 2zuy_A 168 -----------WRINLGRNIR----AGAHYTQFMVYDLDGDGKA-EIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSG 231 (620)
T ss_dssp -----------EEEECCTTSC----CSTTSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSS
T ss_pred -----------EEEcCCCCcc----cccccCceeEEEcCCCCcc-eEEEEccCCcccCcceeecccccccccccceEecC
Q ss_pred ----EEEeCCCCcceeEeeccccC-----------------EEEEeeccCCCceEEEEEecCCe--EEEEEcCCCCCeee
Q 001248 492 ----KVWDATNGAKQYIFEGHEAP-----------------VYSVCPHHKENIQFIFSTALDGK--IKAWLYDNLGSRVD 548 (1114)
Q Consensus 492 ----~iwd~~~~~~~~~~~~h~~~-----------------v~~~~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~ 548 (1114)
.++|=.+|+.+.++.-.... ..+++.........+++-+.-.. |..||++..+....
T Consensus 232 ~eyL~vfdG~TG~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~ 311 (620)
T 2zuy_A 232 PEYLTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKR 311 (620)
T ss_dssp CCEEEEEETTTCCEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEE
T ss_pred CeEEEEEcCCCcceeeecccCCCcCccccccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceeee
Q ss_pred ecCCC-------------CeeEEEEEecCCC-----------------eEEeeecccceeEEEecCC--CCEEEEEeCC-
Q 001248 549 YEAPG-------------RWCTTMAYSADGT-----------------RTYQGFRKRSLGVVQFDTT--KNRFLAAGDD- 595 (1114)
Q Consensus 549 ~~~~~-------------~~v~~~~~s~~g~-----------------~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d- 595 (1114)
..... +.+.-.-+.-||+ ....-.+...+.+-.|.|+ +-.++.+.++
T Consensus 312 W~~ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~Gs~~iD~dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~ 391 (620)
T 2zuy_A 312 WVFDSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGAMAVDHDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDA 391 (620)
T ss_dssp EEEETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEETTEEECTTSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCT
T ss_pred eEecCCCCcccccccccCcCceEEecCCCCceeEEEeeeEECCCCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCC
Q ss_pred ---CeEEEEECCCcceEEEeccCCCCCCcCeEEEcCC
Q 001248 596 ---FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629 (1114)
Q Consensus 596 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~d 629 (1114)
.-..+.|..+|+.+..............-.|.|+
T Consensus 392 ~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp~ 428 (620)
T 2zuy_A 392 TKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPS 428 (620)
T ss_dssp TSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCTT
T ss_pred CCCCceEEEECCCCcEEEEecCcccCCceEEEecCCC
No 411
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=21.29 E-value=6.7e+02 Score=25.64 Aligned_cols=157 Identities=10% Similarity=0.095 Sum_probs=87.5
Q ss_pred CCccEEEEeeCCCEEEEEe-CCeEEEEEcCC---------Cccc---cccCCCCCCeEEEEEecC--CCcEEEEEeCCCc
Q 001248 819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMT---------FKTM---ATFMPPPPAATFLAFHPQ--DNNIIAIGMDDSS 883 (1114)
Q Consensus 819 ~~v~~v~~s~d~~~l~~~~-dg~i~iwd~~~---------~~~~---~~~~~~~~~i~~l~~sp~--d~~~la~g~~dg~ 883 (1114)
..+..+........++..+ .|.++-+.... |..+ ..+. ....|.++...++ +...|+..+.+|.
T Consensus 47 D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~ 125 (312)
T 1suu_A 47 DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGK 125 (312)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSE
T ss_pred CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCe
Confidence 3444444444444555555 78876665431 1111 1122 2234555543321 3567888899999
Q ss_pred EEEEEccc-------ceEEEeecccccCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc-----cccccccCCCCCCC
Q 001248 884 IQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-----KNRFLQIPTGRTPT 951 (1114)
Q Consensus 884 v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~ 951 (1114)
++...+.. |.....+.. .+.+.++....+...++..+.+|.+..+.+..-... ....+....+
T Consensus 126 ~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~---- 200 (312)
T 1suu_A 126 IARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG---- 200 (312)
T ss_dssp EEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT----
T ss_pred EEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC----
Confidence 99988753 223334444 466766666655678888999999999887652111 1112222221
Q ss_pred CCCceEEEEccCCcE-EEEEeCCeEEEEEcCC
Q 001248 952 AQSDTRVQFHQDQIH-FLVVHETQLAIFETTK 982 (1114)
Q Consensus 952 ~~~i~~v~fspdg~~-l~~~~d~~i~iwd~~~ 982 (1114)
..+..+..-.++.. ++++..|..+...+..
T Consensus 201 -d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 201 -DLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp -CCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred -CEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 24555544444444 4447888888887653
No 412
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=21.27 E-value=2.9e+02 Score=22.93 Aligned_cols=90 Identities=9% Similarity=0.051 Sum_probs=50.8
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhcCCCc------c--HHHHHHHhhccCHHHHHHHhccCcc-ccCcccchhhHHHHHHH
Q 001248 9 VFLILQFLDEEKFKETVHKLEQESGFFF------N--MKYFEDEVHNGNWDDVEKYLSGFTK-VDDNRYSMKIFFEIRKQ 79 (1114)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~l~~Esg~~~------~--~~~~~~~i~~g~w~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 79 (1114)
..+-..++....|.++...+++=-.... + ...=......|+|++|+.++..... .++........|.+-.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~- 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL- 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH-
Confidence 3455566666778888877765322111 1 1222445678999999998887632 2322211112222211
Q ss_pred HHHHHHhcCCHHHHHHHHHhhcc
Q 001248 80 KYLEALDKHDRAKAVEILVKDLK 102 (1114)
Q Consensus 80 ~~lell~~~~~~~A~~~l~~~l~ 102 (1114)
=+...|+.++|+..+++-+.
T Consensus 85 ---~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 ---SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp ---HHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHcCCHHHHHHHHHHHHH
Confidence 12457889999988886544
No 413
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=21.25 E-value=1.6e+02 Score=19.50 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=23.9
Q ss_pred CeEEEEeCCCcEEEEeccCCCCcccCCCC
Q 001248 1061 NEFALGLSDGGVHVFEPLESEGKWGVPPP 1089 (1114)
Q Consensus 1061 ~~l~s~~~Dg~v~vW~i~~~~~~~~~~~~ 1089 (1114)
.....-..||..+.++..+++..|+.|..
T Consensus 11 ~W~e~~~~~G~~YYyN~~T~eS~We~P~~ 39 (40)
T 2ysi_A 11 IWVENKTPDGKVYYYNARTRESAWTKPDG 39 (40)
T ss_dssp SEEEEECTTSCEEEEETTTCCEESSCCSC
T ss_pred CCEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 45555578999999999999999988754
No 414
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=21.13 E-value=4.1e+02 Score=25.81 Aligned_cols=91 Identities=8% Similarity=-0.020 Sum_probs=48.5
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHH
Q 001248 9 VFLILQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 83 (1114)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~le 83 (1114)
+++-.-++....|.++...+++=-....+ ...-.-....|+|++|+.++......+.+. ......+...-.-
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT---KAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT---TCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch---hHHHHHHHHHHHH
Confidence 34444445555577777777664333221 233345667899999988888763322111 1211112222222
Q ss_pred HHhcCCHHHHHHHHHhhcc
Q 001248 84 ALDKHDRAKAVEILVKDLK 102 (1114)
Q Consensus 84 ll~~~~~~~A~~~l~~~l~ 102 (1114)
+...++.++|+..+++-+.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHh
Confidence 3445777778777776544
No 415
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=20.79 E-value=3.9e+02 Score=25.07 Aligned_cols=105 Identities=10% Similarity=0.048 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc-H----H----------------HHHHHhhccCHHHHHHHhccCcc-c
Q 001248 6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN-M----K----------------YFEDEVHNGNWDDVEKYLSGFTK-V 63 (1114)
Q Consensus 6 ~~v~~li~q~L~~~g~~~s~~~l~~Esg~~~~-~----~----------------~~~~~i~~g~w~~~~~~~~~~~~-~ 63 (1114)
++++..-..++....|.++...+++=..+..+ . . .=.-....|++++|+..+..... .
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 44666667777777799988888765444332 1 1 22334678999999999887633 2
Q ss_pred cCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccCHHHHHHHHHH
Q 001248 64 DDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQL 118 (1114)
Q Consensus 64 ~~~~~~~~~~~~l~~~~~lell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l 118 (1114)
|++. .+.+.+= .-++..|+.++|+..+++-+. +.+.++.-+..|..+
T Consensus 85 p~~~---~~~~~lg----~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~ 131 (208)
T 3urz_A 85 PNNV---DCLEACA----EMQVCRGQEKDALRMYEKILQ-LEADNLAANIFLGNY 131 (208)
T ss_dssp TTCH---HHHHHHH----HHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred CCCH---HHHHHHH----HHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHH
Confidence 3221 1222221 112456899999999987654 223345555555544
No 416
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=20.78 E-value=4.2e+02 Score=23.11 Aligned_cols=81 Identities=10% Similarity=-0.047 Sum_probs=37.2
Q ss_pred HHHHhhcCHHHHHHHHHHhcCCCcc-----HHHHHHHhhccCHHHHHHHhccCccc-cCcccchhhHHHHHHHHHHHHHh
Q 001248 13 LQFLDEEKFKETVHKLEQESGFFFN-----MKYFEDEVHNGNWDDVEKYLSGFTKV-DDNRYSMKIFFEIRKQKYLEALD 86 (1114)
Q Consensus 13 ~q~L~~~g~~~s~~~l~~Esg~~~~-----~~~~~~~i~~g~w~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~lell~ 86 (1114)
..++...-|.++...+++=..+..+ ...=.-....|+|++|+..+...... +++. ...|.+ =.=++.
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l----g~~~~~ 101 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP---RFPFHA----AECLLQ 101 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---HHHHHH----HHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc---hHHHHH----HHHHHH
Confidence 3344444466666666543222221 11112334567777777766664222 2111 122211 111244
Q ss_pred cCCHHHHHHHHHhh
Q 001248 87 KHDRAKAVEILVKD 100 (1114)
Q Consensus 87 ~~~~~~A~~~l~~~ 100 (1114)
.|+.++|+..++.-
T Consensus 102 ~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 102 XGELAEAESGLFLA 115 (148)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 57777777666654
No 417
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=20.60 E-value=26 Score=28.11 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=16.7
Q ss_pred CCcchHHHHHHHHHHHhhc
Q 001248 1 MSSLSRELVFLILQFLDEE 19 (1114)
Q Consensus 1 ~~~~~~~v~~li~q~L~~~ 19 (1114)
|+..++++...|+|||...
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6778899999999999875
Done!