Query 001249
Match_columns 1114
No_of_seqs 396 out of 3136
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 19:50:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 100.0 1E-139 2E-144 1176.5 110.3 1070 19-1114 1-1074(1075)
2 KOG2023 Nuclear transport rece 100.0 2.7E-80 5.9E-85 647.4 56.7 825 17-1114 5-884 (885)
3 KOG1241 Karyopherin (importin) 100.0 7.4E-60 1.6E-64 503.9 66.8 763 23-880 2-822 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 3.2E-47 6.9E-52 392.3 68.0 667 19-744 1-713 (858)
5 KOG2171 Karyopherin (importin) 100.0 4.8E-40 1E-44 372.1 81.2 851 106-1084 7-998 (1075)
6 KOG1824 TATA-binding protein-i 100.0 3E-34 6.5E-39 313.3 72.2 969 26-1085 9-1184(1233)
7 KOG1991 Nuclear transport rece 100.0 6.2E-31 1.3E-35 292.0 68.6 689 19-736 1-794 (1010)
8 KOG2023 Nuclear transport rece 100.0 7.7E-32 1.7E-36 284.2 47.8 736 231-1082 14-813 (885)
9 KOG1824 TATA-binding protein-i 100.0 9.2E-27 2E-31 255.2 69.0 840 61-1004 10-966 (1233)
10 KOG1241 Karyopherin (importin) 100.0 1.5E-25 3.3E-30 241.5 65.6 748 240-1092 10-816 (859)
11 KOG1992 Nuclear export recepto 100.0 5.5E-25 1.2E-29 239.0 67.0 601 20-639 3-685 (960)
12 KOG1993 Nuclear transport rece 100.0 2.1E-24 4.5E-29 233.2 62.5 541 24-580 2-647 (978)
13 KOG2274 Predicted importin 9 [ 100.0 1.1E-23 2.4E-28 231.5 60.5 598 19-643 1-668 (1005)
14 KOG0213 Splicing factor 3b, su 99.9 1.1E-21 2.3E-26 209.9 55.3 747 185-1084 365-1139(1172)
15 COG5656 SXM1 Importin, protein 99.9 4.5E-19 9.8E-24 190.8 68.1 474 21-511 2-550 (970)
16 COG5215 KAP95 Karyopherin (imp 99.9 3.1E-19 6.8E-24 186.1 59.2 663 10-744 26-811 (858)
17 KOG0213 Splicing factor 3b, su 99.9 9E-18 1.9E-22 180.3 54.9 684 22-800 363-1110(1172)
18 COG5181 HSH155 U2 snRNP splice 99.9 2.1E-18 4.5E-23 181.5 46.3 683 198-1009 181-880 (975)
19 PLN03200 cellulose synthase-in 99.9 1.2E-16 2.6E-21 198.4 63.6 786 21-1003 12-864 (2102)
20 KOG1991 Nuclear transport rece 99.9 4.5E-14 9.8E-19 158.9 72.4 853 116-1113 16-998 (1010)
21 KOG0915 Uncharacterized conser 99.9 9E-17 2E-21 186.8 50.0 467 230-773 817-1325(1702)
22 KOG2022 Nuclear transport rece 99.8 1E-13 2.2E-18 153.7 67.6 604 20-643 5-755 (982)
23 PLN03200 cellulose synthase-in 99.8 6.5E-15 1.4E-19 183.3 61.7 765 142-1100 57-872 (2102)
24 KOG0915 Uncharacterized conser 99.8 1.1E-14 2.4E-19 169.8 56.9 561 373-1064 814-1406(1702)
25 COG5101 CRM1 Importin beta-rel 99.8 7E-13 1.5E-17 140.8 61.4 497 19-536 11-652 (1053)
26 COG5181 HSH155 U2 snRNP splice 99.8 3E-14 6.6E-19 150.5 49.8 682 20-794 166-909 (975)
27 KOG2021 Nuclear mRNA export fa 99.8 1.7E-13 3.7E-18 148.6 54.1 629 22-718 3-782 (980)
28 KOG1242 Protein containing ada 99.8 6.7E-15 1.4E-19 159.0 41.7 503 98-736 50-558 (569)
29 COG5657 CSE1 CAS/CSE protein i 99.8 1.3E-13 2.9E-18 153.8 49.2 543 23-577 5-609 (947)
30 KOG1242 Protein containing ada 99.7 1.3E-13 2.8E-18 149.2 41.6 439 57-555 97-546 (569)
31 KOG1992 Nuclear export recepto 99.6 1.9E-08 4E-13 111.8 66.7 843 68-1113 16-957 (960)
32 KOG1248 Uncharacterized conser 99.6 9.2E-09 2E-13 119.4 67.3 786 206-1112 72-920 (1176)
33 KOG1248 Uncharacterized conser 99.6 8.9E-09 1.9E-13 119.6 65.5 748 58-931 95-919 (1176)
34 KOG0212 Uncharacterized conser 99.6 2.2E-12 4.7E-17 136.1 31.8 412 188-643 4-424 (675)
35 PTZ00429 beta-adaptin; Provisi 99.6 5.5E-10 1.2E-14 130.5 52.6 470 23-576 69-545 (746)
36 KOG0212 Uncharacterized conser 99.6 7.2E-12 1.6E-16 132.2 33.0 394 108-536 5-410 (675)
37 PF01602 Adaptin_N: Adaptin N 99.6 5.1E-11 1.1E-15 141.3 44.0 510 22-618 7-520 (526)
38 PF01602 Adaptin_N: Adaptin N 99.5 7.1E-11 1.5E-15 140.1 40.4 451 16-530 35-522 (526)
39 KOG2081 Nuclear transport regu 99.5 2.5E-10 5.4E-15 122.1 38.8 464 40-535 2-539 (559)
40 KOG0166 Karyopherin (importin) 99.5 9E-12 2E-16 134.5 26.3 363 145-579 68-438 (514)
41 PTZ00429 beta-adaptin; Provisi 99.4 3.9E-08 8.5E-13 115.3 53.6 386 119-579 48-435 (746)
42 KOG0211 Protein phosphatase 2A 99.4 9.3E-10 2E-14 126.8 37.7 564 117-796 95-663 (759)
43 KOG0166 Karyopherin (importin) 99.4 5.2E-10 1.1E-14 121.1 32.3 352 68-492 77-438 (514)
44 KOG0211 Protein phosphatase 2A 99.3 1.1E-08 2.3E-13 118.3 38.2 498 65-623 167-665 (759)
45 KOG2274 Predicted importin 9 [ 99.3 1.1E-05 2.3E-10 91.6 66.5 381 476-953 377-781 (1005)
46 COG5064 SRP1 Karyopherin (impo 99.3 1.7E-10 3.8E-15 114.0 17.0 361 145-577 73-443 (526)
47 PF10508 Proteasom_PSMB: Prote 99.3 7.1E-08 1.5E-12 110.7 41.1 358 108-534 43-422 (503)
48 PF08506 Cse1: Cse1; InterPro 99.2 3.5E-09 7.6E-14 114.3 24.9 255 222-485 73-370 (370)
49 KOG1943 Beta-tubulin folding c 99.2 1.3E-05 2.8E-10 92.9 53.5 474 99-624 337-839 (1133)
50 KOG0392 SNF2 family DNA-depend 99.2 7.4E-06 1.6E-10 95.8 51.6 152 58-216 79-239 (1549)
51 PF10508 Proteasom_PSMB: Prote 99.2 1.7E-07 3.6E-12 107.7 36.8 424 22-489 3-461 (503)
52 PRK09687 putative lyase; Provi 99.1 8.9E-09 1.9E-13 107.6 23.6 251 188-572 27-277 (280)
53 KOG1060 Vesicle coat complex A 99.1 3E-07 6.5E-12 101.8 33.3 439 24-537 73-538 (968)
54 PF12460 MMS19_C: RNAPII trans 99.1 2.8E-07 6E-12 103.7 34.0 381 146-551 2-413 (415)
55 KOG1060 Vesicle coat complex A 99.1 1.9E-06 4.1E-11 95.7 38.5 476 108-649 40-556 (968)
56 PRK13800 putative oxidoreducta 99.1 2.5E-08 5.4E-13 123.4 27.4 274 145-529 623-896 (897)
57 KOG1943 Beta-tubulin folding c 99.1 0.00011 2.5E-09 85.4 60.8 575 355-1037 192-835 (1133)
58 PRK13800 putative oxidoreducta 99.1 3.4E-08 7.4E-13 122.1 28.0 273 106-487 624-896 (897)
59 PF12755 Vac14_Fab1_bd: Vacuol 99.0 3.7E-09 8.1E-14 89.1 11.0 94 393-489 2-95 (97)
60 COG5064 SRP1 Karyopherin (impo 99.0 1.6E-07 3.5E-12 93.5 23.2 397 59-529 74-493 (526)
61 KOG1062 Vesicle coat complex A 99.0 7E-06 1.5E-10 91.9 37.5 428 140-627 100-549 (866)
62 KOG1240 Protein kinase contain 98.9 2.3E-07 4.9E-12 107.6 25.2 302 144-494 423-729 (1431)
63 KOG2020 Nuclear transport rece 98.9 0.00058 1.3E-08 82.4 55.8 143 24-174 12-164 (1041)
64 PF12348 CLASP_N: CLASP N term 98.9 9.1E-08 2E-12 98.9 19.6 189 380-580 10-209 (228)
65 PRK09687 putative lyase; Provi 98.9 4E-07 8.6E-12 95.3 24.0 230 19-302 20-249 (280)
66 KOG0414 Chromosome condensatio 98.9 0.00069 1.5E-08 80.0 66.4 159 141-303 268-428 (1251)
67 KOG1967 DNA repair/transcripti 98.7 0.0014 2.9E-08 75.4 51.8 114 874-994 902-1019(1030)
68 KOG1059 Vesicle coat complex A 98.7 0.00018 3.9E-09 79.8 37.4 221 70-303 103-365 (877)
69 KOG0891 DNA-dependent protein 98.7 0.00096 2.1E-08 87.0 48.3 562 379-998 136-762 (2341)
70 KOG1062 Vesicle coat complex A 98.7 0.0012 2.7E-08 74.7 42.6 421 99-580 103-547 (866)
71 KOG1061 Vesicle coat complex A 98.7 8.1E-05 1.8E-09 84.0 33.2 473 25-576 52-527 (734)
72 KOG1020 Sister chromatid cohes 98.6 0.0037 8E-08 75.8 58.7 113 456-580 812-924 (1692)
73 PF12348 CLASP_N: CLASP N term 98.6 7.4E-07 1.6E-11 92.1 16.2 184 352-542 21-216 (228)
74 COG5240 SEC21 Vesicle coat com 98.6 0.00075 1.6E-08 72.9 38.1 410 101-579 20-444 (898)
75 KOG4224 Armadillo repeat prote 98.6 8.1E-06 1.8E-10 82.5 21.7 386 108-533 90-494 (550)
76 PF12460 MMS19_C: RNAPII trans 98.6 7.2E-05 1.6E-09 84.4 32.2 368 246-642 17-414 (415)
77 KOG1993 Nuclear transport rece 98.6 0.0019 4.1E-08 72.9 40.9 551 43-644 387-972 (978)
78 COG5240 SEC21 Vesicle coat com 98.6 0.00048 1E-08 74.3 34.6 289 181-531 261-554 (898)
79 KOG1820 Microtubule-associated 98.6 3.3E-06 7.1E-11 98.9 20.5 208 372-592 248-458 (815)
80 PF03810 IBN_N: Importin-beta 98.6 2.1E-07 4.6E-12 76.7 7.9 67 42-113 1-76 (77)
81 KOG4224 Armadillo repeat prote 98.6 2.6E-06 5.6E-11 85.9 16.1 358 143-578 85-447 (550)
82 KOG1020 Sister chromatid cohes 98.5 0.0072 1.6E-07 73.5 48.8 321 181-536 813-1154(1692)
83 KOG2032 Uncharacterized conser 98.5 3.7E-05 8E-10 81.7 24.1 165 375-540 215-379 (533)
84 KOG1240 Protein kinase contain 98.5 1.1E-05 2.4E-10 94.1 22.0 298 187-536 425-729 (1431)
85 PF12755 Vac14_Fab1_bd: Vacuol 98.5 4.2E-07 9.1E-12 76.7 7.9 87 434-523 2-88 (97)
86 PF03378 CAS_CSE1: CAS/CSE pro 98.4 0.00012 2.5E-09 81.5 26.1 358 703-1112 17-435 (435)
87 cd00020 ARM Armadillo/beta-cat 98.4 1.9E-06 4.1E-11 78.9 10.2 112 378-490 8-120 (120)
88 KOG1059 Vesicle coat complex A 98.4 0.003 6.5E-08 70.6 35.5 259 140-446 141-400 (877)
89 PF13513 HEAT_EZ: HEAT-like re 98.4 8.6E-07 1.9E-11 67.1 5.8 55 391-445 1-55 (55)
90 PF03378 CAS_CSE1: CAS/CSE pro 98.3 0.002 4.3E-08 71.9 33.2 232 493-779 16-254 (435)
91 KOG1077 Vesicle coat complex A 98.3 0.0051 1.1E-07 68.6 34.5 353 150-550 81-451 (938)
92 KOG2259 Uncharacterized conser 98.3 0.006 1.3E-07 67.6 33.7 294 184-536 198-515 (823)
93 KOG0168 Putative ubiquitin fus 98.2 0.0025 5.5E-08 72.4 31.3 372 144-552 168-651 (1051)
94 KOG4535 HEAT and armadillo rep 98.2 0.0018 3.8E-08 68.6 27.8 432 117-577 9-559 (728)
95 PF04510 DUF577: Family of unk 98.2 0.00018 3.9E-09 65.9 17.2 154 103-260 3-164 (174)
96 KOG0168 Putative ubiquitin fus 98.1 0.0065 1.4E-07 69.3 32.2 182 390-578 181-365 (1051)
97 KOG1822 Uncharacterized conser 98.1 0.066 1.4E-06 67.2 64.0 193 105-304 53-249 (2067)
98 KOG4413 26S proteasome regulat 98.1 0.011 2.5E-07 59.5 29.8 349 156-533 53-440 (524)
99 KOG2021 Nuclear mRNA export fa 98.1 0.04 8.7E-07 62.3 46.2 182 855-1044 550-769 (980)
100 KOG4413 26S proteasome regulat 98.1 0.0081 1.8E-07 60.5 27.6 292 124-449 63-379 (524)
101 KOG1078 Vesicle coat complex C 98.1 0.044 9.6E-07 62.5 37.0 290 181-533 242-533 (865)
102 KOG4535 HEAT and armadillo rep 98.1 0.0053 1.2E-07 65.2 27.5 308 393-738 271-599 (728)
103 cd00020 ARM Armadillo/beta-cat 98.0 1.3E-05 2.8E-10 73.3 7.5 111 419-531 8-119 (120)
104 COG5096 Vesicle coat complex, 98.0 0.053 1.1E-06 63.4 37.6 154 375-547 53-207 (757)
105 PF08389 Xpo1: Exportin 1-like 98.0 3.1E-05 6.7E-10 73.9 10.1 128 118-255 2-148 (148)
106 KOG2956 CLIP-associating prote 98.0 0.00074 1.6E-08 71.7 20.5 204 377-594 287-494 (516)
107 COG5656 SXM1 Importin, protein 98.0 0.051 1.1E-06 61.5 68.7 518 102-719 3-587 (970)
108 KOG2956 CLIP-associating prote 98.0 0.00089 1.9E-08 71.1 20.4 203 232-463 288-493 (516)
109 KOG1061 Vesicle coat complex A 98.0 0.0076 1.6E-07 68.7 28.8 430 23-531 87-527 (734)
110 PF13513 HEAT_EZ: HEAT-like re 98.0 1.2E-05 2.6E-10 60.7 5.0 55 432-488 1-55 (55)
111 KOG2259 Uncharacterized conser 97.9 0.024 5.2E-07 63.1 30.9 294 234-580 201-514 (823)
112 COG5096 Vesicle coat complex, 97.9 0.092 2E-06 61.5 39.8 138 22-173 55-196 (757)
113 KOG2032 Uncharacterized conser 97.9 0.0069 1.5E-07 65.1 25.7 263 143-447 258-531 (533)
114 KOG1058 Vesicle coat complex C 97.9 0.075 1.6E-06 60.3 36.1 432 21-535 22-466 (948)
115 KOG1058 Vesicle coat complex C 97.9 0.02 4.3E-07 64.6 29.9 348 139-557 52-409 (948)
116 KOG1293 Proteins containing ar 97.9 0.048 1E-06 61.0 31.6 148 388-536 388-537 (678)
117 PF08167 RIX1: rRNA processing 97.8 0.00041 8.8E-09 66.4 14.0 138 414-553 21-164 (165)
118 PF05804 KAP: Kinesin-associat 97.8 0.15 3.2E-06 60.3 40.2 377 161-594 267-673 (708)
119 KOG1967 DNA repair/transcripti 97.8 0.14 3E-06 59.8 63.8 136 920-1065 864-1005(1030)
120 PF12717 Cnd1: non-SMC mitotic 97.8 0.00083 1.8E-08 65.6 15.8 111 390-509 1-111 (178)
121 PF13646 HEAT_2: HEAT repeats; 97.8 0.00011 2.4E-09 62.4 8.4 86 380-486 2-88 (88)
122 KOG2933 Uncharacterized conser 97.8 0.00058 1.3E-08 68.6 13.9 147 380-535 91-237 (334)
123 PF14500 MMS19_N: Dos2-interac 97.7 0.016 3.4E-07 60.0 24.7 246 148-424 4-256 (262)
124 PF05804 KAP: Kinesin-associat 97.7 0.025 5.5E-07 66.5 28.2 376 116-535 262-652 (708)
125 PF08506 Cse1: Cse1; InterPro 97.7 0.058 1.3E-06 59.0 29.3 238 263-527 73-370 (370)
126 KOG1078 Vesicle coat complex C 97.7 0.18 4E-06 57.7 40.0 361 140-579 61-423 (865)
127 PF12717 Cnd1: non-SMC mitotic 97.7 0.0018 3.9E-08 63.3 15.9 135 156-303 1-139 (178)
128 KOG4524 Uncharacterized conser 97.7 0.014 3.1E-07 68.0 24.9 95 377-471 803-900 (1014)
129 KOG4653 Uncharacterized conser 97.6 0.0062 1.3E-07 69.7 21.3 233 462-743 729-965 (982)
130 PLN03076 ARF guanine nucleotid 97.6 0.078 1.7E-06 69.0 33.3 310 140-471 1130-1513(1780)
131 PF10274 ParcG: Parkin co-regu 97.6 0.00098 2.1E-08 62.9 12.4 124 458-582 36-169 (183)
132 KOG1410 Nuclear transport rece 97.6 0.19 4.2E-06 56.1 44.3 147 21-174 4-159 (1082)
133 PF05004 IFRD: Interferon-rela 97.6 0.011 2.4E-07 63.0 21.7 197 425-625 50-260 (309)
134 PF14500 MMS19_N: Dos2-interac 97.5 0.035 7.6E-07 57.4 23.2 243 189-466 4-256 (262)
135 PF11864 DUF3384: Domain of un 97.5 0.22 4.8E-06 57.1 32.2 317 120-466 6-350 (464)
136 PF08167 RIX1: rRNA processing 97.5 0.0032 6.9E-08 60.3 14.5 139 140-280 22-163 (165)
137 KOG0889 Histone acetyltransfer 97.5 1 2.2E-05 61.0 50.2 524 178-741 715-1305(3550)
138 KOG4653 Uncharacterized conser 97.5 0.015 3.3E-07 66.7 21.3 225 385-624 735-966 (982)
139 KOG1517 Guanine nucleotide bin 97.4 0.016 3.5E-07 67.7 21.5 147 390-537 570-737 (1387)
140 PF04826 Arm_2: Armadillo-like 97.4 0.0097 2.1E-07 61.0 18.0 190 380-581 15-209 (254)
141 PF13251 DUF4042: Domain of un 97.4 0.0015 3.2E-08 62.5 11.2 143 392-534 1-176 (182)
142 PF02985 HEAT: HEAT repeat; I 97.4 0.00021 4.6E-09 45.9 3.7 30 924-953 1-30 (31)
143 PF13646 HEAT_2: HEAT repeats; 97.4 0.00073 1.6E-08 57.4 8.0 86 420-528 1-88 (88)
144 KOG1077 Vesicle coat complex A 97.4 0.41 8.8E-06 54.2 40.2 324 100-487 108-485 (938)
145 KOG1820 Microtubule-associated 97.3 0.0076 1.7E-07 71.5 18.1 163 375-545 293-457 (815)
146 PF02985 HEAT: HEAT repeat; I 97.3 0.00033 7.1E-09 45.1 3.5 31 419-449 1-31 (31)
147 PLN03076 ARF guanine nucleotid 97.3 1.4 3E-05 58.0 44.7 199 68-268 1148-1384(1780)
148 KOG0946 ER-Golgi vesicle-tethe 97.2 0.62 1.4E-05 53.6 42.1 195 57-262 23-243 (970)
149 PF05004 IFRD: Interferon-rela 97.2 0.043 9.3E-07 58.6 21.0 205 387-597 53-280 (309)
150 KOG0891 DNA-dependent protein 97.2 1.7 3.7E-05 58.3 68.3 266 423-740 486-761 (2341)
151 PF13251 DUF4042: Domain of un 97.2 0.0055 1.2E-07 58.7 12.3 141 119-262 1-176 (182)
152 PF05918 API5: Apoptosis inhib 97.2 0.12 2.6E-06 58.5 24.3 140 142-303 22-162 (556)
153 KOG0889 Histone acetyltransfer 97.1 2.2 4.8E-05 58.0 49.7 94 181-281 46-147 (3550)
154 cd00256 VATPase_H VATPase_H, r 97.1 0.63 1.4E-05 51.5 29.4 353 53-446 50-424 (429)
155 PF04826 Arm_2: Armadillo-like 97.1 0.021 4.6E-07 58.6 16.2 187 106-304 15-206 (254)
156 KOG2160 Armadillo/beta-catenin 97.0 0.04 8.7E-07 57.5 17.4 149 388-537 94-245 (342)
157 PF10274 ParcG: Parkin co-regu 97.0 0.01 2.2E-07 56.2 11.6 94 880-974 37-134 (183)
158 KOG2062 26S proteasome regulat 97.0 1.1 2.3E-05 51.4 30.3 119 382-517 560-679 (929)
159 COG1413 FOG: HEAT repeat [Ener 97.0 0.33 7.2E-06 53.5 25.8 94 142-260 42-135 (335)
160 COG1413 FOG: HEAT repeat [Ener 97.0 0.3 6.4E-06 53.9 25.3 262 184-532 43-304 (335)
161 KOG0413 Uncharacterized conser 97.0 1.3 2.9E-05 52.1 37.5 108 183-301 575-683 (1529)
162 KOG0946 ER-Golgi vesicle-tethe 96.9 1.2 2.6E-05 51.5 28.7 343 103-465 22-416 (970)
163 PF08064 UME: UME (NUC010) dom 96.9 0.015 3.3E-07 50.7 11.0 98 497-600 5-106 (107)
164 PF05918 API5: Apoptosis inhib 96.9 0.099 2.1E-06 59.2 20.0 274 355-643 39-319 (556)
165 PF11865 DUF3385: Domain of un 96.8 0.013 2.8E-07 55.6 11.4 145 375-533 8-158 (160)
166 PF10521 DUF2454: Protein of u 96.8 0.035 7.7E-07 58.7 15.9 167 389-556 87-277 (282)
167 COG5116 RPN2 26S proteasome re 96.8 0.0095 2.1E-07 64.7 11.2 153 381-555 520-673 (926)
168 TIGR02270 conserved hypothetic 96.8 0.45 9.8E-06 52.9 24.5 241 104-446 55-295 (410)
169 KOG1837 Uncharacterized conser 96.8 2.5 5.5E-05 53.0 34.3 217 860-1092 1369-1616(1621)
170 KOG2062 26S proteasome regulat 96.8 0.02 4.3E-07 64.5 13.5 155 379-555 521-676 (929)
171 KOG2759 Vacuolar H+-ATPase V1 96.7 1.1 2.4E-05 47.9 26.0 353 56-447 65-438 (442)
172 smart00802 UME Domain in UVSB 96.6 0.028 6.1E-07 48.5 10.5 98 496-599 4-105 (107)
173 PF13001 Ecm29: Proteasome sta 96.6 1.6 3.4E-05 50.7 28.0 175 355-536 254-447 (501)
174 KOG2022 Nuclear transport rece 96.6 2.4 5.3E-05 49.8 72.7 374 545-1003 463-871 (982)
175 PF12231 Rif1_N: Rap1-interact 96.6 1.8 3.8E-05 48.1 31.3 295 198-554 6-328 (372)
176 cd00256 VATPase_H VATPase_H, r 96.5 1.9 4.2E-05 47.8 28.1 352 142-531 52-424 (429)
177 PF08569 Mo25: Mo25-like; Int 96.5 1.6 3.4E-05 47.1 25.0 188 108-304 81-284 (335)
178 KOG4500 Rho/Rac GTPase guanine 96.4 1.7 3.7E-05 46.5 26.0 153 376-532 314-475 (604)
179 PF12719 Cnd3: Nuclear condens 96.4 0.35 7.6E-06 51.9 20.2 167 380-555 30-208 (298)
180 KOG1949 Uncharacterized conser 96.3 0.33 7.1E-06 54.8 18.8 219 68-303 99-331 (1005)
181 KOG1243 Protein kinase [Genera 96.2 0.092 2E-06 59.7 14.5 254 242-535 265-518 (690)
182 smart00802 UME Domain in UVSB 96.2 0.043 9.3E-07 47.4 9.4 99 410-512 3-105 (107)
183 KOG2149 Uncharacterized conser 96.2 0.1 2.2E-06 55.4 13.9 133 420-554 60-192 (393)
184 KOG1525 Sister chromatid cohes 96.2 5.8 0.00013 50.3 35.8 129 360-491 244-406 (1266)
185 PF11864 DUF3384: Domain of un 96.2 3.4 7.4E-05 47.5 33.3 365 685-1088 4-386 (464)
186 PF08064 UME: UME (NUC010) dom 96.2 0.048 1E-06 47.6 9.7 99 411-513 4-106 (107)
187 KOG1837 Uncharacterized conser 96.2 3.2 7E-05 52.2 27.8 100 856-960 1520-1619(1621)
188 KOG1525 Sister chromatid cohes 96.1 6.7 0.00014 49.8 31.0 149 415-577 256-405 (1266)
189 KOG2025 Chromosome condensatio 96.0 4 8.6E-05 46.8 35.2 106 421-532 542-648 (892)
190 TIGR02270 conserved hypothetic 96.0 1.9 4E-05 48.1 23.5 152 21-212 53-205 (410)
191 KOG0413 Uncharacterized conser 96.0 4.8 0.0001 47.7 27.8 145 391-551 945-1090(1529)
192 PF12719 Cnd3: Nuclear condens 96.0 0.76 1.6E-05 49.4 20.2 110 102-215 26-144 (298)
193 KOG2933 Uncharacterized conser 95.8 0.08 1.7E-06 53.8 10.7 127 358-493 108-237 (334)
194 KOG1517 Guanine nucleotide bin 95.7 0.59 1.3E-05 55.5 18.0 183 20-216 470-673 (1387)
195 PF12054 DUF3535: Domain of un 95.6 0.9 2E-05 51.3 19.4 118 765-883 310-438 (441)
196 KOG4524 Uncharacterized conser 95.5 7.6 0.00017 46.5 54.3 73 143-216 278-350 (1014)
197 KOG2160 Armadillo/beta-catenin 95.5 0.34 7.4E-06 50.9 13.9 146 154-304 94-241 (342)
198 PF01603 B56: Protein phosphat 95.4 1.5 3.2E-05 49.3 19.9 239 20-270 131-380 (409)
199 KOG0414 Chromosome condensatio 95.3 10 0.00022 46.6 62.6 133 356-493 293-431 (1251)
200 PF08623 TIP120: TATA-binding 95.3 0.096 2.1E-06 49.3 8.7 136 958-1099 3-164 (169)
201 PF12054 DUF3535: Domain of un 95.0 2.7 5.8E-05 47.6 20.6 242 390-647 100-367 (441)
202 PF08767 CRM1_C: CRM1 C termin 95.0 3.5 7.6E-05 44.5 20.6 100 390-489 133-243 (319)
203 PF01603 B56: Protein phosphat 94.9 7 0.00015 44.0 23.7 95 203-303 273-370 (409)
204 KOG0392 SNF2 family DNA-depend 94.9 0.28 6.2E-06 59.2 12.8 170 357-535 752-928 (1549)
205 KOG2122 Beta-catenin-binding p 94.9 14 0.0003 46.5 26.3 74 922-1002 529-604 (2195)
206 COG5116 RPN2 26S proteasome re 94.9 0.17 3.7E-06 55.4 10.1 116 385-516 560-675 (926)
207 PF10521 DUF2454: Protein of u 94.9 0.81 1.7E-05 48.5 15.4 147 451-600 111-275 (282)
208 PF13001 Ecm29: Proteasome sta 94.9 10 0.00022 44.1 32.5 82 25-114 26-113 (501)
209 KOG1851 Uncharacterized conser 94.8 16 0.00036 46.3 32.8 176 356-537 1505-1683(1710)
210 PF11865 DUF3385: Domain of un 94.8 0.32 6.9E-06 46.2 10.8 145 416-576 8-156 (160)
211 KOG2149 Uncharacterized conser 94.7 0.83 1.8E-05 48.8 14.5 133 144-281 59-191 (393)
212 KOG2549 Transcription initiati 94.7 2 4.2E-05 47.9 17.5 171 238-426 214-391 (576)
213 PF08767 CRM1_C: CRM1 C termin 94.7 3.7 8.1E-05 44.3 20.0 190 517-743 41-245 (319)
214 KOG2025 Chromosome condensatio 94.7 11 0.00024 43.5 35.1 108 373-485 81-188 (892)
215 KOG2137 Protein kinase [Signal 94.6 0.99 2.1E-05 51.9 15.6 114 415-535 346-461 (700)
216 KOG1243 Protein kinase [Genera 94.4 1.1 2.3E-05 51.4 15.2 187 232-449 331-517 (690)
217 KOG2137 Protein kinase [Signal 94.4 7.5 0.00016 45.2 21.8 145 127-281 373-517 (700)
218 PF03224 V-ATPase_H_N: V-ATPas 94.3 3.5 7.5E-05 44.7 18.9 201 53-264 52-273 (312)
219 COG5095 TAF6 Transcription ini 94.2 2.5 5.5E-05 42.8 15.4 149 414-578 197-360 (450)
220 PF04118 Dopey_N: Dopey, N-ter 94.1 1.4 3.1E-05 46.6 14.7 160 357-529 74-251 (307)
221 PF12530 DUF3730: Protein of u 94.0 6.7 0.00015 40.2 19.3 194 34-247 13-219 (234)
222 PF08623 TIP120: TATA-binding 94.0 0.23 5E-06 46.8 7.8 116 413-534 4-149 (169)
223 KOG0803 Predicted E3 ubiquitin 94.0 8.9 0.00019 48.8 23.3 106 187-299 44-149 (1312)
224 PF08146 BP28CT: BP28CT (NUC21 94.0 2.4 5.1E-05 39.9 14.5 97 860-956 41-151 (153)
225 COG5095 TAF6 Transcription ini 93.9 4.7 0.0001 40.9 16.8 101 855-955 251-362 (450)
226 KOG1293 Proteins containing ar 93.7 16 0.00035 41.9 40.1 108 385-493 427-536 (678)
227 PF05536 Neurochondrin: Neuroc 93.7 18 0.00039 42.4 33.8 180 118-304 71-262 (543)
228 KOG1949 Uncharacterized conser 93.6 0.74 1.6E-05 52.2 11.9 150 380-532 177-331 (1005)
229 PF10363 DUF2435: Protein of u 93.5 0.61 1.3E-05 39.2 8.6 82 924-1017 4-85 (92)
230 PF10363 DUF2435: Protein of u 93.3 0.8 1.7E-05 38.5 9.1 84 461-554 4-87 (92)
231 PF12231 Rif1_N: Rap1-interact 93.3 16 0.00035 40.6 36.2 166 411-582 32-209 (372)
232 cd08050 TAF6 TATA Binding Prot 92.7 0.92 2E-05 49.4 11.1 128 360-488 197-338 (343)
233 KOG2549 Transcription initiati 92.7 3.3 7.2E-05 46.1 14.9 154 360-514 226-394 (576)
234 KOG0567 HEAT repeat-containing 92.6 4.9 0.00011 40.4 14.5 198 388-629 80-287 (289)
235 cd08050 TAF6 TATA Binding Prot 92.5 1.2 2.6E-05 48.5 11.7 123 422-555 182-320 (343)
236 PF00790 VHS: VHS domain; Int 92.4 2.6 5.7E-05 39.1 12.2 95 500-594 39-135 (140)
237 PF04118 Dopey_N: Dopey, N-ter 92.3 4.1 8.9E-05 43.2 14.8 154 382-537 16-172 (307)
238 KOG1822 Uncharacterized conser 92.3 48 0.001 43.4 72.8 203 855-1065 891-1108(2067)
239 KOG1048 Neural adherens juncti 92.1 30 0.00066 40.8 28.4 364 141-532 230-641 (717)
240 smart00638 LPD_N Lipoprotein N 91.8 10 0.00022 45.5 19.6 153 358-527 376-540 (574)
241 KOG2759 Vacuolar H+-ATPase V1 91.3 25 0.00054 38.2 26.3 347 97-490 79-438 (442)
242 COG5218 YCG1 Chromosome conden 91.2 30 0.00066 39.1 22.4 245 150-444 18-263 (885)
243 KOG4500 Rho/Rac GTPase guanine 90.5 29 0.00064 37.7 19.3 151 60-216 227-392 (604)
244 PF12074 DUF3554: Domain of un 90.5 31 0.00068 37.9 21.5 222 100-333 19-256 (339)
245 KOG3961 Uncharacterized conser 90.4 1.1 2.4E-05 42.9 7.3 93 458-552 112-207 (262)
246 PF08161 NUC173: NUC173 domain 90.1 5.3 0.00011 39.4 12.2 74 508-585 5-78 (198)
247 cd03561 VHS VHS domain family; 90.0 4.2 9.1E-05 37.3 10.9 78 417-494 36-116 (133)
248 KOG1048 Neural adherens juncti 89.9 39 0.00085 40.0 20.5 106 384-491 240-350 (717)
249 cd03568 VHS_STAM VHS domain fa 89.7 4.2 9.1E-05 37.8 10.6 78 417-494 36-114 (144)
250 PF01347 Vitellogenin_N: Lipop 89.6 29 0.00063 42.1 21.1 99 181-299 487-585 (618)
251 PF00514 Arm: Armadillo/beta-c 89.3 0.61 1.3E-05 32.3 3.8 29 923-951 12-40 (41)
252 PF05536 Neurochondrin: Neuroc 89.3 51 0.0011 38.7 38.9 237 142-408 4-263 (543)
253 PF01347 Vitellogenin_N: Lipop 89.3 29 0.00063 42.1 20.8 128 69-211 447-586 (618)
254 KOG1848 Uncharacterized conser 89.0 49 0.0011 41.8 21.0 232 197-447 854-1132(1610)
255 PF12333 Ipi1_N: Rix1 complex 88.7 3.1 6.7E-05 36.0 8.4 62 410-471 3-64 (102)
256 PF03224 V-ATPase_H_N: V-ATPas 88.7 13 0.00029 40.2 15.5 107 154-262 68-181 (312)
257 PF00514 Arm: Armadillo/beta-c 88.6 0.79 1.7E-05 31.7 3.9 29 418-446 12-40 (41)
258 KOG1789 Endocytosis protein RM 88.6 68 0.0015 39.2 24.1 138 158-303 1740-1883(2235)
259 KOG0567 HEAT repeat-containing 88.1 32 0.0007 34.9 19.3 112 391-534 170-282 (289)
260 cd03569 VHS_Hrs_Vps27p VHS dom 87.9 5.1 0.00011 37.1 9.9 79 417-495 40-119 (142)
261 cd03568 VHS_STAM VHS domain fa 87.2 6.5 0.00014 36.5 10.1 94 355-451 18-114 (144)
262 PF08389 Xpo1: Exportin 1-like 86.9 4.2 9.2E-05 38.2 9.3 104 376-485 25-148 (148)
263 KOG2081 Nuclear transport regu 86.1 68 0.0015 36.5 35.5 151 430-593 401-552 (559)
264 PF14664 RICTOR_N: Rapamycin-i 86.0 61 0.0013 35.9 19.5 149 140-303 22-176 (371)
265 KOG3036 Protein involved in ce 85.9 41 0.00088 33.8 19.0 70 145-215 126-198 (293)
266 smart00288 VHS Domain present 85.4 18 0.00038 33.2 12.0 78 501-580 35-114 (133)
267 PF00790 VHS: VHS domain; Int 85.3 9.6 0.00021 35.4 10.4 79 416-494 40-122 (140)
268 COG5231 VMA13 Vacuolar H+-ATPa 85.3 51 0.0011 34.4 20.9 65 382-446 361-427 (432)
269 smart00638 LPD_N Lipoprotein N 85.0 95 0.0021 37.2 24.1 150 142-303 356-509 (574)
270 cd03567 VHS_GGA VHS domain fam 84.9 15 0.00032 33.8 11.1 76 418-493 38-119 (139)
271 PF12830 Nipped-B_C: Sister ch 84.9 27 0.00058 34.4 13.9 65 23-88 9-76 (187)
272 PF12726 SEN1_N: SEN1 N termin 84.3 1.2E+02 0.0025 37.6 37.9 150 57-217 78-246 (727)
273 PF11698 V-ATPase_H_C: V-ATPas 84.3 4.6 9.9E-05 35.6 7.1 57 896-953 58-116 (119)
274 PF09324 DUF1981: Domain of un 84.1 9 0.0002 31.8 8.6 70 182-256 15-84 (86)
275 PF11698 V-ATPase_H_C: V-ATPas 83.8 4.2 9.2E-05 35.8 6.7 70 418-490 43-115 (119)
276 KOG1877 Putative transmembrane 83.7 1.1E+02 0.0024 37.0 20.1 97 690-798 75-175 (819)
277 PF04078 Rcd1: Cell differenti 83.7 12 0.00025 38.2 10.6 136 859-1000 69-219 (262)
278 smart00288 VHS Domain present 83.6 11 0.00024 34.5 9.9 78 417-494 36-115 (133)
279 PF12333 Ipi1_N: Rix1 complex 83.1 3.9 8.4E-05 35.4 6.3 63 494-556 2-65 (102)
280 PF12397 U3snoRNP10: U3 small 83.0 17 0.00037 32.7 10.8 73 373-448 2-75 (121)
281 PF12074 DUF3554: Domain of un 82.6 82 0.0018 34.6 19.5 195 882-1091 23-239 (339)
282 KOG0929 Guanine nucleotide exc 82.5 83 0.0018 40.8 19.3 229 116-370 1049-1301(1514)
283 KOG3036 Protein involved in ce 82.3 30 0.00065 34.6 12.3 72 882-953 125-198 (293)
284 cd03569 VHS_Hrs_Vps27p VHS dom 82.3 19 0.00041 33.4 10.8 97 116-218 20-118 (142)
285 PF04388 Hamartin: Hamartin pr 82.2 44 0.00096 40.3 16.7 95 180-281 66-161 (668)
286 COG5218 YCG1 Chromosome conden 82.2 99 0.0021 35.3 34.9 165 23-211 92-263 (885)
287 PF12765 Cohesin_HEAT: HEAT re 82.1 1.9 4E-05 30.0 3.2 25 417-441 17-41 (42)
288 KOG3961 Uncharacterized conser 81.8 3.6 7.7E-05 39.6 5.8 74 899-972 131-207 (262)
289 PF11919 DUF3437: Domain of un 81.7 2.6 5.6E-05 35.1 4.4 61 392-453 4-64 (90)
290 PF12830 Nipped-B_C: Sister ch 81.6 56 0.0012 32.1 14.8 84 184-277 8-91 (187)
291 PF12530 DUF3730: Protein of u 80.9 71 0.0015 32.8 22.3 197 62-284 6-215 (234)
292 KOG2199 Signal transducing ada 80.3 14 0.0003 39.4 10.0 104 384-495 19-123 (462)
293 cd03561 VHS VHS domain family; 80.2 23 0.00049 32.5 10.6 80 501-581 35-116 (133)
294 PF05327 RRN3: RNA polymerase 79.5 1.4E+02 0.0031 35.4 20.4 54 920-973 343-398 (563)
295 PF11919 DUF3437: Domain of un 79.2 1.6 3.5E-05 36.3 2.5 78 1026-1112 5-82 (90)
296 KOG4199 Uncharacterized conser 78.7 94 0.002 32.9 31.9 112 416-530 330-442 (461)
297 KOG1222 Kinesin associated pro 78.2 1.2E+02 0.0025 33.7 23.9 92 395-488 281-372 (791)
298 PF07571 DUF1546: Protein of u 77.5 11 0.00024 31.8 7.0 61 154-214 17-78 (92)
299 PF14225 MOR2-PAG1_C: Cell mor 77.2 59 0.0013 33.9 13.6 75 456-536 184-258 (262)
300 KOG2005 26S proteasome regulat 76.7 1E+02 0.0022 35.8 15.8 65 378-448 641-705 (878)
301 cd03565 VHS_Tom1 VHS domain fa 76.6 32 0.0007 31.9 10.4 92 417-508 37-133 (141)
302 cd03572 ENTH_epsin_related ENT 76.3 19 0.00042 32.1 8.4 75 501-575 36-117 (122)
303 PF11701 UNC45-central: Myosin 76.0 28 0.0006 33.1 10.2 139 61-211 8-156 (157)
304 cd03567 VHS_GGA VHS domain fam 75.9 30 0.00066 31.9 9.9 94 355-451 19-120 (139)
305 PF12783 Sec7_N: Guanine nucle 75.7 57 0.0012 31.4 12.6 106 198-303 35-146 (168)
306 KOG4199 Uncharacterized conser 75.3 1.2E+02 0.0025 32.2 28.7 306 386-740 116-442 (461)
307 KOG0803 Predicted E3 ubiquitin 74.9 1.7E+02 0.0036 38.1 18.9 102 385-488 49-151 (1312)
308 PLN03205 ATR interacting prote 74.8 1.3E+02 0.0028 32.5 17.6 206 122-330 302-548 (652)
309 PF09324 DUF1981: Domain of un 74.7 16 0.00034 30.4 7.2 67 143-210 17-84 (86)
310 PF08713 DNA_alkylation: DNA a 74.4 5.8 0.00013 40.2 5.6 70 376-451 119-188 (213)
311 cd03572 ENTH_epsin_related ENT 74.4 19 0.00041 32.2 7.8 76 139-214 34-119 (122)
312 PF06685 DUF1186: Protein of u 74.0 69 0.0015 32.9 12.8 48 966-1017 113-161 (249)
313 PF04510 DUF577: Family of unk 73.7 37 0.0008 32.1 9.8 128 419-553 4-139 (174)
314 PF08713 DNA_alkylation: DNA a 73.2 62 0.0014 32.6 12.9 144 376-543 50-195 (213)
315 cd00197 VHS_ENTH_ANTH VHS, ENT 73.0 42 0.00091 29.8 10.1 73 373-445 33-113 (115)
316 PF07571 DUF1546: Protein of u 72.7 11 0.00023 31.9 5.7 59 388-446 17-77 (92)
317 PF11701 UNC45-central: Myosin 72.6 23 0.0005 33.6 8.7 131 354-487 21-156 (157)
318 KOG2122 Beta-catenin-binding p 72.2 3.1E+02 0.0067 35.7 25.8 74 418-492 530-603 (2195)
319 PF03542 Tuberin: Tuberin; In 71.8 1.6E+02 0.0035 32.3 18.5 172 140-330 138-328 (356)
320 cd00197 VHS_ENTH_ANTH VHS, ENT 71.4 51 0.0011 29.2 10.3 74 415-488 34-113 (115)
321 KOG2973 Uncharacterized conser 71.1 15 0.00033 37.9 7.3 106 421-532 6-111 (353)
322 COG5098 Chromosome condensatio 70.9 2.2E+02 0.0047 33.5 53.2 129 359-492 283-417 (1128)
323 COG4912 Predicted DNA alkylati 70.4 22 0.00047 35.1 7.9 83 361-449 102-185 (222)
324 PF12783 Sec7_N: Guanine nucle 69.9 1.1E+02 0.0023 29.5 14.8 99 156-260 35-146 (168)
325 PF04078 Rcd1: Cell differenti 68.9 1.5E+02 0.0032 30.6 17.4 71 144-215 96-169 (262)
326 KOG2973 Uncharacterized conser 68.6 37 0.00081 35.3 9.4 104 382-490 8-111 (353)
327 KOG2011 Sister chromatid cohes 68.4 3.2E+02 0.007 34.4 21.6 126 394-526 262-393 (1048)
328 KOG2011 Sister chromatid cohes 67.6 1.6E+02 0.0034 36.9 15.9 135 153-301 297-433 (1048)
329 smart00185 ARM Armadillo/beta- 67.6 6.8 0.00015 26.7 3.1 28 419-446 13-40 (41)
330 COG5369 Uncharacterized conser 67.4 19 0.00041 40.2 7.6 137 394-532 406-545 (743)
331 smart00185 ARM Armadillo/beta- 66.0 7.9 0.00017 26.4 3.1 28 924-951 13-40 (41)
332 PF04388 Hamartin: Hamartin pr 66.0 76 0.0016 38.4 13.1 76 857-932 85-161 (668)
333 cd00872 PI3Ka_I Phosphoinositi 65.9 47 0.001 31.9 9.1 81 20-116 37-118 (171)
334 cd06561 AlkD_like A new struct 64.9 23 0.0005 35.2 7.6 67 380-451 108-174 (197)
335 PF14868 DUF4487: Domain of un 64.5 2.9E+02 0.0063 32.5 26.7 73 120-194 244-317 (559)
336 PF14668 RICTOR_V: Rapamycin-i 63.8 19 0.0004 28.8 5.0 55 393-449 3-60 (73)
337 PF11935 DUF3453: Domain of un 63.7 1.8E+02 0.004 29.9 16.3 127 193-330 2-162 (239)
338 PF11707 Npa1: Ribosome 60S bi 63.5 2.3E+02 0.005 31.0 21.3 74 231-304 56-144 (330)
339 PF10441 Urb2: Urb2/Npa2 famil 63.4 1.8E+02 0.0038 29.6 14.7 168 943-1113 8-212 (223)
340 cd03565 VHS_Tom1 VHS domain fa 62.9 1.2E+02 0.0025 28.2 11.0 93 501-594 36-132 (141)
341 PF08161 NUC173: NUC173 domain 62.8 1.7E+02 0.0036 29.1 14.4 57 397-453 20-76 (198)
342 PF08569 Mo25: Mo25-like; Int 62.8 2.3E+02 0.0051 30.8 23.5 188 68-261 87-284 (335)
343 KOG3678 SARM protein (with ste 61.9 68 0.0015 35.2 10.2 69 891-959 231-300 (832)
344 COG5369 Uncharacterized conser 61.9 1.2E+02 0.0027 34.2 12.3 155 378-533 432-595 (743)
345 PF12765 Cohesin_HEAT: HEAT re 61.7 16 0.00035 25.4 3.9 27 182-209 16-42 (42)
346 PF14664 RICTOR_N: Rapamycin-i 60.6 2.7E+02 0.0059 30.9 19.5 217 30-262 33-271 (371)
347 KOG2199 Signal transducing ada 59.8 88 0.0019 33.7 10.4 94 355-451 26-122 (462)
348 cd00870 PI3Ka_III Phosphoinosi 58.8 72 0.0016 30.5 9.0 80 21-116 45-125 (166)
349 PF14631 FancD2: Fanconi anaem 58.6 96 0.0021 41.1 12.9 166 400-578 417-582 (1426)
350 PF12397 U3snoRNP10: U3 small 57.2 49 0.0011 29.7 7.5 74 414-492 2-76 (121)
351 PF14668 RICTOR_V: Rapamycin-i 56.6 32 0.0007 27.4 5.2 54 435-491 4-59 (73)
352 KOG2256 Predicted protein invo 56.4 4E+02 0.0086 31.4 19.2 61 581-642 415-476 (661)
353 KOG2213 Apoptosis inhibitor 5/ 55.3 3.1E+02 0.0068 29.9 22.7 53 685-742 38-90 (460)
354 cd00864 PI3Ka Phosphoinositide 55.1 91 0.002 29.4 9.0 81 20-116 37-118 (152)
355 KOG0929 Guanine nucleotide exc 55.0 6E+02 0.013 33.6 18.2 78 394-471 1242-1322(1514)
356 COG5209 RCD1 Uncharacterized p 54.6 43 0.00094 32.9 6.7 58 896-953 160-219 (315)
357 KOG2085 Serine/threonine prote 54.5 2E+02 0.0044 31.5 12.0 249 27-303 156-414 (457)
358 KOG3687 Tuberin - Rap/ran-GTPa 53.9 5.2E+02 0.011 32.0 25.5 77 429-511 441-522 (1697)
359 KOG2256 Predicted protein invo 53.3 4.4E+02 0.0096 31.0 18.3 180 414-597 278-475 (661)
360 PF14838 INTS5_C: Integrator c 52.5 4.9E+02 0.011 31.3 23.9 63 23-86 182-245 (696)
361 PF08146 BP28CT: BP28CT (NUC21 52.0 78 0.0017 29.9 8.0 82 563-644 36-118 (153)
362 KOG1848 Uncharacterized conser 51.4 6.7E+02 0.015 32.6 27.4 153 116-268 854-1034(1610)
363 KOG2038 CAATT-binding transcri 51.2 5.1E+02 0.011 31.1 23.9 112 178-303 298-409 (988)
364 PF10350 DUF2428: Putative dea 50.4 3E+02 0.0066 28.7 13.0 158 390-549 60-245 (255)
365 KOG3723 PH domain protein Melt 49.8 4.5E+02 0.0098 30.1 19.5 73 287-374 54-126 (851)
366 COG5657 CSE1 CAS/CSE protein i 49.2 6E+02 0.013 31.3 52.6 156 67-240 14-179 (947)
367 PF07539 DRIM: Down-regulated 48.8 2E+02 0.0044 26.6 10.0 81 417-512 16-97 (141)
368 PF11841 DUF3361: Domain of un 48.5 2.4E+02 0.0053 26.7 10.6 100 857-957 34-136 (160)
369 smart00567 EZ_HEAT E-Z type HE 47.6 25 0.00053 22.1 2.8 15 391-405 1-15 (30)
370 smart00145 PI3Ka Phosphoinosit 47.5 1.4E+02 0.003 29.2 9.2 79 21-115 43-122 (184)
371 KOG2038 CAATT-binding transcri 47.4 5.8E+02 0.013 30.7 24.8 77 226-311 299-375 (988)
372 PF11935 DUF3453: Domain of un 47.4 3.4E+02 0.0073 28.0 17.6 123 427-554 2-163 (239)
373 PF03130 HEAT_PBS: PBS lyase H 47.3 15 0.00033 22.5 1.7 14 434-447 1-14 (27)
374 cd07064 AlkD_like_1 A new stru 46.3 95 0.0021 31.2 8.2 67 378-450 116-182 (208)
375 PF12612 TFCD_C: Tubulin foldi 45.7 1.8E+02 0.0039 28.8 10.0 110 416-532 5-116 (193)
376 KOG1087 Cytosolic sorting prot 45.2 2.5E+02 0.0054 32.0 11.8 88 417-506 37-126 (470)
377 PF14225 MOR2-PAG1_C: Cell mor 44.9 3.9E+02 0.0084 28.0 21.6 124 120-260 131-254 (262)
378 KOG1087 Cytosolic sorting prot 43.8 2.2E+02 0.0048 32.4 11.2 94 501-596 36-132 (470)
379 cd03562 CID CID (CTD-Interacti 43.6 1.7E+02 0.0036 25.9 8.6 84 430-524 17-100 (114)
380 PF12243 CTK3: CTD kinase subu 42.9 1E+02 0.0022 28.4 6.9 75 423-508 13-89 (139)
381 cd00869 PI3Ka_II Phosphoinosit 41.8 2.1E+02 0.0045 27.5 9.1 81 20-116 37-118 (169)
382 PF01417 ENTH: ENTH domain; I 41.0 2.7E+02 0.0059 25.1 9.9 89 357-445 19-119 (125)
383 COG5098 Chromosome condensatio 40.4 7E+02 0.015 29.6 62.7 113 187-303 302-415 (1128)
384 PF14676 FANCI_S2: FANCI solen 39.5 3.2E+02 0.007 25.9 10.0 117 76-209 37-156 (158)
385 PF14961 BROMI: Broad-minded p 38.4 2.2E+02 0.0047 36.1 10.7 73 106-178 164-237 (1296)
386 PF14222 MOR2-PAG1_N: Cell mor 37.9 7.5E+02 0.016 29.3 28.7 321 104-434 130-526 (552)
387 KOG1222 Kinesin associated pro 37.0 6.5E+02 0.014 28.3 24.7 75 371-449 588-665 (791)
388 KOG2213 Apoptosis inhibitor 5/ 36.3 6.2E+02 0.013 27.8 22.8 52 477-533 40-91 (460)
389 PF10350 DUF2428: Putative dea 35.9 5.3E+02 0.011 26.9 15.0 78 897-974 162-250 (255)
390 PF00613 PI3Ka: Phosphoinositi 35.9 85 0.0018 30.7 5.8 80 20-115 43-123 (184)
391 PF12612 TFCD_C: Tubulin foldi 35.8 4.4E+02 0.0096 26.0 15.1 150 99-260 3-158 (193)
392 PF12726 SEN1_N: SEN1 N termin 35.7 9.5E+02 0.021 29.8 37.9 164 103-269 77-252 (727)
393 KOG3678 SARM protein (with ste 35.1 6.8E+02 0.015 28.0 14.9 141 21-171 179-335 (832)
394 PF01465 GRIP: GRIP domain; I 33.0 90 0.002 22.3 4.0 34 99-133 3-36 (46)
395 PF13925 Katanin_con80: con80 32.8 1.3E+02 0.0028 28.8 6.5 55 124-179 46-105 (164)
396 PF14961 BROMI: Broad-minded p 32.2 4.6E+02 0.0099 33.6 11.9 131 421-555 164-316 (1296)
397 PF07539 DRIM: Down-regulated 31.5 3.1E+02 0.0066 25.5 8.3 30 182-212 15-44 (141)
398 smart00582 RPR domain present 31.2 2E+02 0.0042 25.7 7.1 59 424-493 6-64 (121)
399 PF14222 MOR2-PAG1_N: Cell mor 30.7 9.7E+02 0.021 28.4 33.4 314 198-535 144-503 (552)
400 PF12243 CTK3: CTD kinase subu 30.4 4.4E+02 0.0096 24.4 11.1 81 462-553 10-93 (139)
401 COG5110 RPN1 26S proteasome re 28.7 9.5E+02 0.021 27.7 18.8 84 899-996 619-702 (881)
402 KOG1104 Nuclear cap-binding co 28.4 5.6E+02 0.012 30.7 11.3 32 613-644 374-405 (759)
403 PF14868 DUF4487: Domain of un 28.2 1.1E+03 0.023 28.0 26.5 160 374-534 381-554 (559)
404 KOG4646 Uncharacterized conser 27.6 4.8E+02 0.01 23.9 10.4 99 106-210 19-124 (173)
405 PF14676 FANCI_S2: FANCI solen 27.0 4.8E+02 0.01 24.8 8.9 82 164-256 76-157 (158)
406 COG5231 VMA13 Vacuolar H+-ATPa 26.5 8.1E+02 0.018 26.1 22.0 72 418-490 356-428 (432)
407 PF09759 Atx10homo_assoc: Spin 26.0 1.4E+02 0.0031 25.7 4.8 32 925-956 30-63 (102)
408 PF04699 P16-Arc: ARP2/3 compl 24.8 3.5E+02 0.0075 25.5 7.4 58 1056-1113 52-110 (152)
409 COG1698 Uncharacterized protei 24.6 3E+02 0.0065 22.8 5.9 36 16-51 7-48 (93)
410 PF14228 MOR2-PAG1_mid: Cell m 24.6 1.7E+03 0.036 29.1 26.1 54 899-952 933-986 (1120)
411 COG5110 RPN1 26S proteasome re 24.3 1.1E+03 0.025 27.1 16.8 34 181-215 447-480 (881)
412 PF08620 RPAP1_C: RPAP1-like, 24.0 1.3E+02 0.0028 24.0 3.8 31 145-175 41-71 (73)
413 PF04147 Nop14: Nop14-like fam 22.7 1.3E+03 0.029 29.0 14.2 58 875-932 559-617 (840)
414 PRK04964 hypothetical protein; 22.4 2.4E+02 0.0053 21.3 4.5 48 695-742 8-60 (66)
415 PF08324 PUL: PUL domain; Int 22.3 4.3E+02 0.0093 27.7 8.9 101 389-489 122-230 (268)
416 PF06371 Drf_GBD: Diaphanous G 22.2 4.9E+02 0.011 25.3 8.8 60 429-489 127-186 (187)
417 COG5537 IRR1 Cohesin [Cell div 22.0 1.3E+03 0.029 27.1 13.9 168 148-330 280-449 (740)
418 PF06786 UPF0253: Uncharacteri 22.0 2.5E+02 0.0055 21.3 4.6 48 695-742 8-60 (66)
419 KOG2842 Interferon-related pro 21.9 1.1E+03 0.024 26.0 16.9 101 387-487 70-174 (427)
420 PHA02836 putative transmembran 21.7 1.4E+02 0.003 26.5 3.8 37 899-935 104-141 (153)
421 PF10978 DUF2785: Protein of u 21.7 4.6E+02 0.01 25.4 8.1 45 70-116 12-56 (175)
422 PF06025 DUF913: Domain of Unk 21.6 4.4E+02 0.0096 29.4 8.9 149 853-1003 73-236 (379)
423 PF04869 Uso1_p115_head: Uso1 21.3 5.4E+02 0.012 27.8 9.1 144 57-215 35-186 (312)
424 smart00755 Grip golgin-97, Ran 21.2 1.7E+02 0.0037 20.9 3.6 32 100-133 3-34 (46)
425 cd00871 PI4Ka Phosphoinositide 20.8 7.5E+02 0.016 24.0 9.0 39 68-118 82-120 (175)
426 KOG4541 Nuclear transport rece 20.6 1.4E+03 0.029 26.6 13.1 111 163-275 577-695 (748)
427 PF11841 DUF3361: Domain of un 20.5 7.4E+02 0.016 23.5 13.7 100 159-263 33-134 (160)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-139 Score=1176.53 Aligned_cols=1070 Identities=46% Similarity=0.766 Sum_probs=990.7
Q ss_pred CChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
|+.++|.++++.++||||++|++||+.|+....+.| .++.|.+++.+++++++||+|++++|+++.+. |++++.
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~----w~~l~~ 74 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTKH----WSRLSA 74 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH----hhcCCH
Confidence 577899999999999999999999999997655333 57899999999999999999999999999986 999999
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhh
Q 001249 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1114)
++++.||+.+|..+.+|+.+.||+++|++++.||+.+++. .||+++++++++.+|+++..|+.|+.+|..+.+.++..+
T Consensus 75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 9999999999999999999999999999999999999995 999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcC-CcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001249 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT-SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE 257 (1114)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~ 257 (1114)
.+|++.+.++|.++++++ +..||..|+++++.++...+ ++..+..|..++|.++.++...+++++.+....++++|.+
T Consensus 154 ~~~~~~l~~lf~q~~~d~-s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDP-SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred chhHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 999999999999999998 55699999999999999985 4557788999999999999999999999999999999999
Q ss_pred HHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 001249 258 LAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (1114)
Q Consensus 258 l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 337 (1114)
+++..|+.+++|+.+++.++++++.+++.++.+|..|++++.++++ ++|.+.|+.+++...+++.++.+|.+..+|+
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e---~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSE---YAPAMCKKLALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH---hhHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence 9999999999999999999999999999999999999999999999 5899999999999999999999999999889
Q ss_pred ccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001249 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1114)
Q Consensus 338 ~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 417 (1114)
+|...|+.|||+ +.+++..|.+++|+++.++|++.++|.+++++..++.|++|+.|+||+++|+.+++||.+.+..+++
T Consensus 310 ew~~~d~~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~ 388 (1075)
T KOG2171|consen 310 EWSNEDDLDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP 388 (1075)
T ss_pred hhcccccccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999877666654 5667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc
Q 001249 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1114)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1114)
+|++.++++|+|++|+||++|+.++|++++.++|.+++.+...+.|.+...+.+..+++|+.+|+.++.+|.+.+.++.+
T Consensus 389 ~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l 468 (1075)
T KOG2171|consen 389 KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL 468 (1075)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999988888899999999999977899999999999999999999999
Q ss_pred cCchHHHHH-HHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHH
Q 001249 498 TPYLDGIVS-KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1114)
Q Consensus 498 ~~~l~~il~-~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1114)
.||++.+|+ .+..+++++++.+|+.+..+||+++.+++..|.||++++||.|..++++..+++.+.+|++.++|++.++
T Consensus 469 ~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 469 EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 999999999 5555667788999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCC
Q 001249 577 MAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADS 656 (1114)
Q Consensus 577 ~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~ 656 (1114)
.++|++.|.|++.++++++...+.+..+.+++.+++.+.+|+++|+++|++|.||+|.+||.++++.+.+|+....|+
T Consensus 549 ~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~-- 626 (1075)
T KOG2171|consen 549 RAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDE-- 626 (1075)
T ss_pred HHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCc--
Confidence 999999999999999999999877777888999999999999999999999999999999999999999998776633
Q ss_pred cccccCCCCcccchhhcCCc-eeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHH
Q 001249 657 DNEIEDSDDDSMETITLGDK-RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVS 735 (1114)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~ 735 (1114)
+++.++.+.++|++..++++ .++|+|+.+++|+.||.+|+.++..++..|.||++++++..++.+.+++|++||++|+.
T Consensus 627 ~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~ 706 (1075)
T KOG2171|consen 627 EDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAE 706 (1075)
T ss_pred hhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 22233346678998888887 99999999999999999999999999999999999999988888999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Q 001249 736 AMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP-LLDEGQVRSIVDE 814 (1114)
Q Consensus 736 al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~~~~~~~~~ 814 (1114)
+++.++.+...+..+ .+.+++.++..+.+.++..+.+|++++++.++++++++|++.+|+ .++++.+..+...
T Consensus 707 ~~p~ll~~~~~A~~~------~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~ 780 (1075)
T KOG2171|consen 707 SMPQLLTCALKACQG------GPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGG 780 (1075)
T ss_pred HHHHHHHHHHHHhcc------ChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHH
Confidence 999999998776543 356899999999999999999999999999999999999999997 4788888888888
Q ss_pred HHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCC
Q 001249 815 IKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK 894 (1114)
Q Consensus 815 l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 894 (1114)
+...+.....+...|..+...+|+|.++.+.+. |.|..+...+.+++..+++.++..|.|+|..++|.+..++.++.
T Consensus 781 ~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~---e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~ 857 (1075)
T KOG2171|consen 781 LLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLD---EQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKK 857 (1075)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHh---hhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCC
Confidence 877777777666666544334444444444333 56788999999999999999999999999999999999997777
Q ss_pred CHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhc
Q 001249 895 TAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIR 974 (1114)
Q Consensus 895 ~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~ 974 (1114)
... |++|+++++++++++|++..+|...++|.++.++.|++|+||++|+||+|.+++++++.+.|.+...++.|..+++
T Consensus 858 ~~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq 936 (1075)
T KOG2171|consen 858 TVA-RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQ 936 (1075)
T ss_pred cHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHc
Confidence 766 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhhhHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchh
Q 001249 975 HPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLP 1054 (1114)
Q Consensus 975 ~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~~~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~l~ 1054 (1114)
.+.++.+++..+++||++|++|++.+++..+++++++|.||++||+.+|.+|+...|.+|+.|+++++|.+++++++++|
T Consensus 937 ~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip 1016 (1075)
T KOG2171|consen 937 PPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIP 1016 (1075)
T ss_pred ChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccch
Confidence 99888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhhC
Q 001249 1055 KIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS 1114 (1114)
Q Consensus 1055 ~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1114 (1114)
+|+.++.+.+.+.+...+++..++...++++.+ |...|.+.+++||++++++||+.++
T Consensus 1017 ~i~~v~~~~~~~~~~~~~~~~~r~~~ilkq~~~--~~~~~~~~~~~L~~~~~~~lq~~~~ 1074 (1075)
T KOG2171|consen 1017 KILSVCAESLADKKIEPRSTLARVIEILKQFLA--PPSQFAALLATLPPDQQQALQAVLN 1074 (1075)
T ss_pred HHHHHHHhhhhccCCCccchHHHHHHHHHHHhc--CHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 999999999987776666666699999999988 4445999999999999999999873
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-80 Score=647.45 Aligned_cols=825 Identities=22% Similarity=0.325 Sum_probs=665.2
Q ss_pred hCCCh---HHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCC
Q 001249 17 LGPDS---APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSF 91 (1114)
Q Consensus 17 ~~~~~---~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~A~~~Lk~~l~~~~~~ 91 (1114)
|.|+. +|+.++|++.+|||+++|+.+...|.++.. .|+ |..||+.+|.. +.+..+|..|+.+|||.++.+
T Consensus 5 w~p~e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pd-fnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~--- 79 (885)
T KOG2023|consen 5 WQPDEQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPD-FNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGH--- 79 (885)
T ss_pred CcccHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc-ccc-hhceeeEEEecccccchhHHHHhhhhHhcccccc---
Confidence 55553 577788899999999999999999999999 788 47999999986 778889999999999999987
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhh
Q 001249 92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1114)
Q Consensus 92 ~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~ 171 (1114)
|..++++.+.++|..+++.+.+ +++.||...+.+|.+|++... ...||+++|.|.+++.+++.+..++|+.+|..||
T Consensus 80 -~~~~~~~~~~yiKs~~l~~lgd-~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIc 156 (885)
T KOG2023|consen 80 -YNSIPSEVLDYIKSECLHGLGD-ASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELLDSPDYNTCEGAFGALQKIC 156 (885)
T ss_pred -ccCCChHHHHHHHHHHHhhccC-chHHHHhhhhheeeeeecccc-cccchhHHHHHHHHhcCCcccccchhHHHHHHHH
Confidence 9999999999999999999997 788999999999999998644 3789999999999999999999999999999999
Q ss_pred hhhhhhhh-----hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHH
Q 001249 172 QYIGDTLT-----PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1114)
Q Consensus 172 ~~~~~~~~-----~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~ 246 (1114)
|+..+.+. ..++-++|.|++..+++ ++.+|..|+.|+..++... ...+...+..+++.++...++.+++
T Consensus 157 EDsa~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~-----~qal~~~iD~Fle~lFalanD~~~e 230 (885)
T KOG2023|consen 157 EDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ-----TQALYVHIDKFLEILFALANDEDPE 230 (885)
T ss_pred hhhHHHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC-----cHHHHHHHHHHHHHHHHHccCCCHH
Confidence 99776543 35788999999999998 9999999999999888653 3456667889999999999999999
Q ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHH
Q 001249 247 TAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAIL 326 (1114)
Q Consensus 247 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l 326 (1114)
+|+.+|..|.-+.+..++.+.||+..+++++++..+ +.+++|...|+|||.++++. |--..-+.+|+.+++|.|
T Consensus 231 VRk~vC~alv~Llevr~dkl~phl~~IveyML~~tq--d~dE~VALEACEFwla~aeq----pi~~~~L~p~l~kliPvL 304 (885)
T KOG2023|consen 231 VRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQ--DVDENVALEACEFWLALAEQ----PICKEVLQPYLDKLIPVL 304 (885)
T ss_pred HHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHcc--CcchhHHHHHHHHHHHHhcC----cCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999775 45788999999999999994 321223678999999999
Q ss_pred HHhhcCCCCCcc---------------------cc-------------cCCCCCc--ccc---CCCchhhHHHHHHHHHH
Q 001249 327 MSMLLDIEDDPL---------------------WH-------------SAETEDE--DAG---ESSNYSVGQECLDRLAI 367 (1114)
Q Consensus 327 ~~~l~~~~~~~~---------------------~~-------------~~~~~~e--d~~---~~~~~~~a~~~l~~l~~ 367 (1114)
++.|.+.++|.. +. ++++||| ||| +|..++..+.+|+.|++
T Consensus 305 l~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan 384 (885)
T KOG2023|consen 305 LSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN 384 (885)
T ss_pred HccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH
Confidence 999987643310 00 0011111 111 24455678889999999
Q ss_pred HcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHh
Q 001249 368 ALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1114)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1114)
.+| ++++|.++|++.+.+.+.+|++|++++.++|++++||.+.+.+|++.++|++++.|.|..|.||..+||+|++++.
T Consensus 385 vf~-~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 385 VFG-DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred hhH-HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhh
Confidence 998 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHH
Q 001249 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 527 (1114)
Q Consensus 448 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l 527 (1114)
+.-.+-..+|+..++..+++.+-| ++++||++||+|+..+.+..+++ +.||+..|+..|..+++....+-..-.+.++
T Consensus 464 wv~~~~~~~~f~pvL~~ll~~llD-~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~KNLlILYDAI 541 (885)
T KOG2023|consen 464 WVVQDSRDEYFKPVLEGLLRRLLD-SNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKKNLLILYDAI 541 (885)
T ss_pred hHhcCChHhhhHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhcceehHHHHH
Confidence 885544457899999999999999 89999999999999999999876 6799999999999999877655555688999
Q ss_pred HHHHHhhhhhhh--hhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCC
Q 001249 528 ASVADSSQEHFQ--KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMET 605 (1114)
Q Consensus 528 ~~l~~~~~~~~~--~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~ 605 (1114)
|++++.+|.++. .|.+.+||+|.+.|+.-.+++ ..+-. .+||++.++.++| ..|.||++++++-...+..
T Consensus 542 gtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D-KdLfP-LLEClSsia~AL~-~gF~P~~~~Vy~Rc~~il~----- 613 (885)
T KOG2023|consen 542 GTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD-KDLFP-LLECLSSIASALG-VGFLPYAQPVYQRCFRILQ----- 613 (885)
T ss_pred HHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc-chHHH-HHHHHHHHHHHHh-ccccccCHHHHHHHHHHHH-----
Confidence 999999998775 489999999999887643322 11111 2555555555555 4455554444432221100
Q ss_pred CCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhH
Q 001249 606 DDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVL 685 (1114)
Q Consensus 606 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 685 (1114)
+++..+++.- .++.
T Consensus 614 ---------~t~q~~~~~~--------------------~~~~------------------------------------- 627 (885)
T KOG2023|consen 614 ---------KTLQLLAKVQ--------------------QDPT------------------------------------- 627 (885)
T ss_pred ---------HHHHHHHhcc--------------------CCcc-------------------------------------
Confidence 0000000000 0000
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 001249 686 EEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLS 765 (1114)
Q Consensus 686 ~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1114)
+
T Consensus 628 ---------------------------------------------------------------------~---------- 628 (885)
T KOG2023|consen 628 ---------------------------------------------------------------------V---------- 628 (885)
T ss_pred ---------------------------------------------------------------------c----------
Confidence 0
Q ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhh
Q 001249 766 DFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESEL 845 (1114)
Q Consensus 766 ~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~ 845 (1114)
..+|.+...
T Consensus 629 ------------~~pdkdfiI----------------------------------------------------------- 637 (885)
T KOG2023|consen 629 ------------EAPDKDFII----------------------------------------------------------- 637 (885)
T ss_pred ------------cCCCcceEE-----------------------------------------------------------
Confidence 001111111
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHH--HHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHh
Q 001249 846 IKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDE--LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYET 923 (1114)
Q Consensus 846 ~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~ 923 (1114)
.+.+++..+++++|.+..+.+.. +...++... .+..+++|++++.++|++.++|.+.+.|+...
T Consensus 638 -------------~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~-~D~~peVRQS~FALLGDltk~c~~~v~p~~~~ 703 (885)
T KOG2023|consen 638 -------------VSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCL-QDEVPEVRQSAFALLGDLTKACFEHVIPNLAD 703 (885)
T ss_pred -------------EeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 11222222222222222222211 333333333 57789999999999999999999999999999
Q ss_pred HHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCC
Q 001249 924 YLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRD 1003 (1114)
Q Consensus 924 i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~ 1003 (1114)
++|.+...+..+.-.+++||+|++|+++...+...++|+..++..|..++..+.. ..++.+|.+.++||+...+|+
T Consensus 704 fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~----~~tllENtAITIGrLg~~~Pe 779 (885)
T KOG2023|consen 704 FLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNT----PKTLLENTAITIGRLGYICPE 779 (885)
T ss_pred HHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCc----hHHHHHhhhhhhhhhhccCHH
Confidence 9999998888888999999999999999999999999999999999999987653 468999999999999999999
Q ss_pred CC--CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 001249 1004 SI--DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNL 1081 (1114)
Q Consensus 1004 ~~--~~~~~~~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~ 1081 (1114)
.+ +++.++..|+..+....|.+|+.++|.++|.++..++..++ .-+.+|+.+..++.....+++..+..+
T Consensus 780 ~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv--------~~~~f~c~aiAsw~np~~~l~~~f~ki 851 (885)
T KOG2023|consen 780 EVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVV--------SSFIFICDAIASWSNPEDDLRDEFYKI 851 (885)
T ss_pred hcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhh--------hhhHHHHHHHhcccChHHHHHHHHHHH
Confidence 87 68999999999998889999999999999999965543333 356778888877665567899999999
Q ss_pred HHHHHhhCChhhHHHHHhcCCHHHHHHHHhhhC
Q 001249 1082 LKQLQQTLPPATLASTWSSLQPQQQLALQSILS 1114 (1114)
Q Consensus 1082 l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1114 (1114)
|.++++++++.+|+++..++||+.+..|+++|+
T Consensus 852 L~g~k~qvg~~nW~~~~~qf~P~~~erl~a~y~ 884 (885)
T KOG2023|consen 852 LQGFKNQVGKINWQRFSEQFPPPLKERLQAFYG 884 (885)
T ss_pred HHHHHHHhhhhhHHHHhhcCChhHHHHHHHHhC
Confidence 999999999999999999999999999999885
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-60 Score=503.87 Aligned_cols=763 Identities=20% Similarity=0.309 Sum_probs=611.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCC-------CCccc
Q 001249 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (1114)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~-------~~~w~ 94 (1114)
++.++|+..+|||.++|++||++|+++.++|.+.|+..|.++|.+ ..+...|..|++.|||.+..++ .+.|-
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 567888889999999999999999999988888899999999998 6678999999999999998864 56799
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCCh-hhHHHHHHHHHHhhhh
Q 001249 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFAQLSQY 173 (1114)
Q Consensus 95 ~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~-~~r~~al~~l~~l~~~ 173 (1114)
.++.+.|+++|+.+++.|.+ +.+..+..++++++.||..++|.+.||++++.+.....++.+ .++++++.++|++|++
T Consensus 82 ~l~~e~reqVK~~il~tL~~-~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGS-PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 99999999999999999997 789999999999999999999999999999999999876654 5999999999999999
Q ss_pred hhh-hhhhhHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHH
Q 001249 174 IGD-TLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEA 251 (1114)
Q Consensus 174 ~~~-~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~ 251 (1114)
+.+ .+....+.++..+..++... ++..||.+|++||.+.+++....+..+.- -..++++.++..+++|.+++..+
T Consensus 161 i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~e---rn~iMqvvcEatq~~d~~i~~aa 237 (859)
T KOG1241|consen 161 IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEME---RNYIMQVVCEATQSPDEEIQVAA 237 (859)
T ss_pred CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhh---hceeeeeeeecccCCcHHHHHHH
Confidence 654 45667888888888888754 57899999999999999876433222221 23688999999999999999999
Q ss_pred HHHHHHHHccchHHHHHHHHH-HHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhh-----ccchhhhcc--------hh
Q 001249 252 LELLIELAGTEPRFLRRQLVD-VVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE-----RAPGMMRKL--------PQ 317 (1114)
Q Consensus 252 ~~~l~~l~~~~~~~~~~~~~~-l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~-----~~~~~~~~~--------~~ 317 (1114)
+.||..+...+++++.+|+.+ ++...+..+ ++.+++|..+++|||+++|+.+- +.....+.. ..
T Consensus 238 ~~ClvkIm~LyY~~m~~yM~~alfaitl~am--ks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~ 315 (859)
T KOG1241|consen 238 FQCLVKIMSLYYEFMEPYMEQALFAITLAAM--KSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQ 315 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHH
Confidence 999999999999999999886 888777766 46789999999999999988521 111001111 12
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHH
Q 001249 318 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAA 397 (1114)
Q Consensus 318 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aa 397 (1114)
.++.++|.|++.|...++ ++|+|+|++.++|+.||..+++..| +.++|+++||+.+.+++++|+.|++|
T Consensus 316 a~~~v~P~Ll~~L~kqde----------~~d~DdWnp~kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~~pdwr~reaa 384 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDE----------DDDDDDWNPAKAAGVCLMLFAQCVG-DDIVPHVLPFIEENIQNPDWRNREAA 384 (859)
T ss_pred HHhHhhHHHHHHHHhCCC----------CcccccCcHHHHHHHHHHHHHHHhc-ccchhhhHHHHHHhcCCcchhhhhHH
Confidence 445789999998887543 2345579999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHH-hhhhhhhHHHHHhhccCCCCh
Q 001249 398 LIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDFQNP 475 (1114)
Q Consensus 398 l~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~il~~l~~~l~~~~~~ 475 (1114)
.+++|.+.+|.. +.+.+...+.+|.++..+.|++-.||.++.|++|++++.++..+. ..+...+++.++..|+| .|
T Consensus 385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--eP 462 (859)
T KOG1241|consen 385 VMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EP 462 (859)
T ss_pred HHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--Cc
Confidence 999999999865 566788889999999999999999999999999999998865432 35788899999999999 89
Q ss_pred hHHHHHHHHHHHhhhcCCc--------ccccCchHHHHHHHHHHhhcC---ChhHHHHHHHHHHHHHHhhhhhhhhhHhh
Q 001249 476 RVQAHAASAVLNFSENCTP--------EILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQEHFQKYYDA 544 (1114)
Q Consensus 476 ~v~~~a~~al~~l~~~~~~--------~~l~~~l~~il~~L~~~l~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~ 544 (1114)
+|...+|+++..|.+.+.. +...|+++.|+..|++.-+.. ....|..++++|+.++..+.+...|....
T Consensus 463 rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~ 542 (859)
T KOG1241|consen 463 RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQK 542 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999865421 245579999999999987763 47899999999999999988776554443
Q ss_pred ----hhHHHHHHHhh-----ccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHH
Q 001249 545 ----VMPFLKAILVN-----ATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQ 615 (1114)
Q Consensus 545 ----i~~~L~~~l~~-----~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 615 (1114)
++..|.+.++. .+..+...+.+-...+++.+.+.+|. .+.++.+.+|.+++++.++ .....+.+.++-
T Consensus 543 ~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s--~~s~~v~e~a~l 619 (859)
T KOG1241|consen 543 LTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFES--KRSAVVHEEAFL 619 (859)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcC--CccccchHHHHH
Confidence 33434344431 12223456777778899999999994 8999999999999998775 233457788899
Q ss_pred HHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHH
Q 001249 616 AWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNML 695 (1114)
Q Consensus 616 ~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l 695 (1114)
+.+.++..+|+.|..|+|.+.|.+...++.-. +. ..=.+|+...
T Consensus 620 aV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~-------------------e~-----------------qVc~~aVglV 663 (859)
T KOG1241|consen 620 AVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ-------------------EY-----------------QVCAAAVGLV 663 (859)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch-------------------HH-----------------HHHHHHHHHH
Confidence 99999999999999999999999999994311 11 1123577789
Q ss_pred HHHHHHhhhhccccHHHHHHHhhhccccc-CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Q 001249 696 CCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVE 774 (1114)
Q Consensus 696 ~~~~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 774 (1114)
|.++..++..|.||...++..++..+..+ .|.+|+-...+++|.+.-++.. .+.++++.+++.+-+
T Consensus 664 gdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~-------------~F~~Yl~~vm~llq~ 730 (859)
T KOG1241|consen 664 GDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGA-------------DFEPYLEMVMPLLQQ 730 (859)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754 4677888888999988776633 356778888886655
Q ss_pred HH--ccCC----c----HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhh
Q 001249 775 AL--HKEP----D----TEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESE 844 (1114)
Q Consensus 775 ~~--~~~~----~----~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~ 844 (1114)
+- +.++ . .+++..++++...+++.++.......+.+++..+++++..... +++
T Consensus 731 as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~----------e~~------- 793 (859)
T KOG1241|consen 731 ASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAA----------EPD------- 793 (859)
T ss_pred HHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhc----------Ccc-------
Confidence 54 2232 1 2355666777777777777544455666777877777765321 111
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHH
Q 001249 845 LIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFD 880 (1114)
Q Consensus 845 ~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 880 (1114)
.++.+...+..++|.|+..+|.+..+++.
T Consensus 794 -------~~~~~~~~a~GlIgDL~~~fg~~~~~~~~ 822 (859)
T KOG1241|consen 794 -------VSEALHAAALGLIGDLATMFGKGVIKLFL 822 (859)
T ss_pred -------cchHHHHHHHHHHHHHHHHcccchhhhhc
Confidence 13456777889999999999988766554
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.2e-47 Score=392.26 Aligned_cols=667 Identities=16% Similarity=0.201 Sum_probs=517.5
Q ss_pred CChHHHHHHHHH-HcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCC-------
Q 001249 19 PDSAPFETLISH-LMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD------- 89 (1114)
Q Consensus 19 ~~~~~l~~ll~~-~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~------- 89 (1114)
|...++.++.++ .+|||.+.|..||++|+++...+.+.|+..|.+.|.+ +.+++.|..|++.|||.+..++
T Consensus 1 M~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~ 80 (858)
T COG5215 1 MKKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGC 80 (858)
T ss_pred CchHHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 445677788776 6899999999999999999987888899999999998 7789999999999999998764
Q ss_pred CCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCCh-hhHHHHHHHHH
Q 001249 90 SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFA 168 (1114)
Q Consensus 90 ~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~-~~r~~al~~l~ 168 (1114)
...|-.+++|.|+++|...++.|.+ +.+..-+.+++.++.||++++|++.||+++..+........+ ..+..++.+++
T Consensus 81 ~qrW~~~~~E~k~qvK~~al~aL~s-~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~g 159 (858)
T COG5215 81 SQRWLGMRHESKEQVKGMALRALKS-PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICG 159 (858)
T ss_pred HHhhccCCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHH
Confidence 5779999999999999999999998 799999999999999999999999999999999998876544 67788999999
Q ss_pred Hhhhhhhh-hhhhhHHHHHH-HHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHH
Q 001249 169 QLSQYIGD-TLTPHLKHLHA-VFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1114)
Q Consensus 169 ~l~~~~~~-~~~~~~~~l~~-~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~ 246 (1114)
..|+...+ .+....+.++- ++...++.+++..||.+|+++|..-+.+..+.+..+ .-...++++.++..+.++.+
T Consensus 160 y~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E---~erNy~mqvvceatq~~d~e 236 (858)
T COG5215 160 YHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYE---EERNYFMQVVCEATQGNDEE 236 (858)
T ss_pred HHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcch---hhhchhheeeehhccCCcHH
Confidence 99998654 44444444444 444455665688999999999998665553322221 22347889999999999999
Q ss_pred HHHHHHHHHHHHHccchHHHHHHHHHH-HHHHHHHhccCCcchhHHHHHHHHHHHHHHhhh-------ccchhhhcch--
Q 001249 247 TAQEALELLIELAGTEPRFLRRQLVDV-VGSMLQIAEAESLEEGTRHLAIEFVITLAEARE-------RAPGMMRKLP-- 316 (1114)
Q Consensus 247 ~~~~~~~~l~~l~~~~~~~~~~~~~~l-~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~-------~~~~~~~~~~-- 316 (1114)
+...++.||..+...+++++.+|+.+. .......+ ++.++++..+++|||.++|+.+- +.|..-....
T Consensus 237 ~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m--ks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~f 314 (858)
T COG5215 237 LQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM--KSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGF 314 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcch
Confidence 999999999999999999999998754 44444444 45689999999999999998521 2221101111
Q ss_pred --hhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHH
Q 001249 317 --QFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1114)
Q Consensus 317 --~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 394 (1114)
..+..++|.+++.|....+| .++|+|++..+|..||..+++..| +.++..++.++.+.+.+++|..|
T Consensus 315 a~aav~dvlP~lL~LL~~q~ed----------~~~DdWn~smaA~sCLqlfaq~~g-d~i~~pVl~FvEqni~~~~w~nr 383 (858)
T COG5215 315 ARAAVADVLPELLSLLEKQGED----------YYGDDWNPSMAASSCLQLFAQLKG-DKIMRPVLGFVEQNIRSESWANR 383 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC----------ccccccchhhhHHHHHHHHHHHhh-hHhHHHHHHHHHHhccCchhhhH
Confidence 23566899999998875432 234578888999999999999998 78888899999999999999999
Q ss_pred HHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHh-hhhhhhHHHHHhhccCC
Q 001249 395 HAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN-QFHPQVLPALAGAMDDF 472 (1114)
Q Consensus 395 ~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~il~~l~~~l~~~ 472 (1114)
++|.+++|.+.++..+ .+.+++++.+|.+...+.|+.-.|+..++||+|+++.+....+.. .++...+...+..+.|
T Consensus 384 eaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D- 462 (858)
T COG5215 384 EAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD- 462 (858)
T ss_pred HHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-
Confidence 9999999999998654 556788999999999999999999999999999999988665521 3567777788888888
Q ss_pred CChhHHHHHHHHHHHhhhcCCc------ccccCchHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHhhhhhhhhhHhh
Q 001249 473 QNPRVQAHAASAVLNFSENCTP------EILTPYLDGIVSKLLVLLQ--NGKQMVQEGALTALASVADSSQEHFQKYYDA 544 (1114)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~~------~~l~~~l~~il~~L~~~l~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~ 544 (1114)
+|++...+++...++++++.+ +.+.++++.|+..|++..+ ......|..+++++|+++..+++...+.+-.
T Consensus 463 -~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~ 541 (858)
T COG5215 463 -CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAG 541 (858)
T ss_pred -cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 889889999999999887643 4566788888888887644 3456789999999999998877654443332
Q ss_pred ----hhHHHHHH-------HhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHH
Q 001249 545 ----VMPFLKAI-------LVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYM 613 (1114)
Q Consensus 545 ----i~~~L~~~-------l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 613 (1114)
++..|-+. +...+.....++....+..+..+.+..+ ..+.+-.+++|++++++..+. ......+-+
T Consensus 542 ~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~-~~ie~v~D~lm~Lf~r~les~--~~t~~~~dV 618 (858)
T COG5215 542 FYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRR-RDIEDVEDQLMELFIRILEST--KPTTAFGDV 618 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHHHHhcc--CCchhhhHH
Confidence 23222222 2111111234456666666777777666 345667788999999866542 223466778
Q ss_pred HHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHH
Q 001249 614 LQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACN 693 (1114)
Q Consensus 614 ~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~ 693 (1114)
+.+++.++..+++.|..|++.++|.+.+.+..... ..-..|+.
T Consensus 619 ~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~-------------------------------------~v~~~avg 661 (858)
T COG5215 619 YTAISALSTSLEERFEQYASKFIPYLTRALNCTDR-------------------------------------FVLNSAVG 661 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhH-------------------------------------HHHHHHHH
Confidence 88999999999999999999999999999843110 01235777
Q ss_pred HHHHHHHHhhhhccccHHHHHHHhhhccccc-CCHHHHHHHHHhHHHHHHHH
Q 001249 694 MLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSA 744 (1114)
Q Consensus 694 ~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~al~~l~~~~ 744 (1114)
.++.++..++..|.+|...++..+...+..+ .+.+++-+..++++.+....
T Consensus 662 lvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlai 713 (858)
T COG5215 662 LVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAI 713 (858)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999988887653 24456566666666665443
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-40 Score=372.10 Aligned_cols=851 Identities=17% Similarity=0.237 Sum_probs=594.1
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcC-CChhhHHHHHHHHHHhhhhhhhhhhh-hHH
Q 001249 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTLTP-HLK 183 (1114)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~-~~~~~r~~al~~l~~l~~~~~~~~~~-~~~ 183 (1114)
..|++.|.+ ++..+|+.+-+.+.++... +.+++.|...+.+ +++.+|..|...++.++......+.. ...
T Consensus 7 ~qLl~~l~s-pDn~vr~~Ae~~l~~~~~~-------~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~ 78 (1075)
T KOG2171|consen 7 EQLLQQLLS-PDNEVRRQAEEALETLAKT-------EPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQ 78 (1075)
T ss_pred HHHHHHhcC-CCchHHHHHHHHHHHhhcc-------cchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHH
Confidence 356666666 7999999999999877652 2288889888764 68999999999999998876665543 455
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch
Q 001249 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1114)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 263 (1114)
++...++.++..++.+.||+.-.+.+..+++..- ..-||.+++.++++.+++++..|..++.+|..+.+..+
T Consensus 79 siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l--------~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~ 150 (1075)
T KOG2171|consen 79 SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDL--------PEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFG 150 (1075)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhc
Confidence 6777778777776688999999999999998742 22688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001249 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1114)
Q Consensus 264 ~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1114)
..+.+|++.+...+.+.+++++ ..+|..|...+.+++...+..+... +....++|.++..+.+..+++
T Consensus 151 ~~~~~~~~~l~~lf~q~~~d~s--~~vr~~a~rA~~a~~~~~~~~~~~~----~~~~~llP~~l~vl~~~i~~~------ 218 (1075)
T KOG2171|consen 151 NTLQPHLDDLLRLFSQTMTDPS--SPVRVAAVRALGAFAEYLENNKSEV----DKFRDLLPSLLNVLQEVIQDG------ 218 (1075)
T ss_pred cccchhHHHHHHHHHHhccCCc--chHHHHHHHHHHHHHHHhccchHHH----HHHHHHhHHHHHHhHhhhhcc------
Confidence 9999999999999999887653 4499999999999998532222222 344555665555554432210
Q ss_pred CCCccccCCCchhhHHHHHHHHHHHcCC--CcchHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHHhhcHHHHH------
Q 001249 344 TEDEDAGESSNYSVGQECLDRLAIALGG--NTIVPVASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVMV------ 413 (1114)
Q Consensus 344 ~~~ed~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~------ 413 (1114)
+......+.+++..+....++ +..+..++++..+...+. +...|+.|+..+-.++++.+...+
T Consensus 219 -------d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~ 291 (1075)
T KOG2171|consen 219 -------DDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLG 291 (1075)
T ss_pred -------chHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhh
Confidence 000112233444444444331 122333444444444443 466788888877777765332111
Q ss_pred ----------------------------------------------------HhHHHHHHHHHhcCCCCChhHHHHHHHH
Q 001249 414 ----------------------------------------------------KNLEQVLSMVLNSFRDPHPRVRWAAINA 441 (1114)
Q Consensus 414 ----------------------------------------------------~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 441 (1114)
..++.+++.+...+.++++.-|.+++.+
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLA 371 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1133455666667778889999999999
Q ss_pred HHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC-ChhHH
Q 001249 442 IGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-KQMVQ 520 (1114)
Q Consensus 442 l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~-~~~v~ 520 (1114)
|+.+++.+++.+ ...+++|++.+++.++| ++|+||.+||.+++.+..++.+..-..|-..+.+.|...+.++ ++.|+
T Consensus 372 ls~i~EGc~~~m-~~~l~~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ 449 (1075)
T KOG2171|consen 372 LSVIAEGCSDVM-IGNLPKILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQ 449 (1075)
T ss_pred HHHHHcccHHHH-HHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHH
Confidence 999999999988 67999999999999999 9999999999999999999988755556666677888888775 46888
Q ss_pred HHHHHHHHHHHH-hhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHh
Q 001249 521 EGALTALASVAD-SSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQ 599 (1114)
Q Consensus 521 ~~al~~l~~l~~-~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~ 599 (1114)
..|..++-.+.. +.++.+.||++.+|..++..+... ....++..+..+|+.++.+.+ +.|.||.+.+|+.+....
T Consensus 450 ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~---~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L 525 (1075)
T KOG2171|consen 450 AHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS---SKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFL 525 (1075)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHH
Confidence 887777766654 456788999999999666665442 356789999999999999999 889999999999999954
Q ss_pred cCC-CCCCCchhhHHHHHHHHHHHHhc-cCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCce
Q 001249 600 GSQ-METDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKR 677 (1114)
Q Consensus 600 ~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1114)
.+. -++...+|...++|++.++.+.| +.|.|+-..++..++.....+. ++++.
T Consensus 526 ~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~----------------~~dd~--------- 580 (1075)
T KOG2171|consen 526 QNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQ----------------DDDDP--------- 580 (1075)
T ss_pred hCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccch----------------hhccc---------
Confidence 433 23445689999999999999998 5699999999998887752110 11111
Q ss_pred eeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccC-------------------------CH---HH
Q 001249 678 IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYF-------------------------HE---EV 729 (1114)
Q Consensus 678 ~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~-------------------------~~---~v 729 (1114)
.+...+.+++.+++.+|..|.||++.+++.+++..+-.. +. .|
T Consensus 581 ---------~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I 651 (1075)
T KOG2171|consen 581 ---------LRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGI 651 (1075)
T ss_pred ---------cHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeee
Confidence 123446689999999999999999999999886653200 01 11
Q ss_pred -------HHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCC-
Q 001249 730 -------RKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP- 801 (1114)
Q Consensus 730 -------r~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~- 801 (1114)
+..|+.+|+.+..-.+.++ .+|+.+.+...+|.+.-.+. ..++.++++++-.++.....
T Consensus 652 ~Tsvl~eK~~A~~~Lv~~a~~lk~~F---------~pYve~v~~l~v~~l~f~fh----dgVR~aa~~~~p~ll~~~~~A 718 (1075)
T KOG2171|consen 652 RTSVLDEKETACEALGEYAKELKEAF---------APYVEQVVELMVPLLKFYFH----DGVRKAAAESMPQLLTCALKA 718 (1075)
T ss_pred eehhHHHHHHHHHHHHHHHHhhhhhh---------hhHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHH
Confidence 3556677776655443332 23555555544454444333 35666666666655544221
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhch--hhh
Q 001249 802 -LLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAF--LPF 878 (1114)
Q Consensus 802 -~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~ 878 (1114)
..++..+..+...+.+.+.+.+. .|.+.++...+.+.++..++.+|... -++
T Consensus 719 ~~~~p~~l~~l~~~~~~~l~~~l~-------------------------~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~ 773 (1075)
T KOG2171|consen 719 CQGGPEYLKQLWEAIRPALIKALE-------------------------EEPETEVLSEILESFAECIEVMGDNCLNEDG 773 (1075)
T ss_pred hccChHHHHHHHHHHHHHHHHHhh-------------------------cCCcHHHHHHHHHHHHHHHHhcCcccCCcHH
Confidence 12344443333333333332211 12345666677778888888887442 233
Q ss_pred HHHHHHhHhh----hhc-----------CCCCHHHH-----------HHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhc
Q 001249 879 FDELSSYLTP----MWG-----------KDKTAEER-----------RIAICIFDDVAEQCREAALKYYETYLPFLLEAC 932 (1114)
Q Consensus 879 ~~~l~~~l~~----~l~-----------~~~~~~~r-----------~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l 932 (1114)
+..+...+.. ..+ .+.+..++ ..+..++..+++..+..+.+++..+.|.+++.+
T Consensus 774 ~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l 853 (1075)
T KOG2171|consen 774 LEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLL 853 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHH
Confidence 3322221111 100 01011111 124566777778888888899999999999999
Q ss_pred cCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCC-C-HhhH
Q 001249 933 NDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI-D-AAQV 1010 (1114)
Q Consensus 933 ~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~-~-~~~~ 1010 (1114)
.+..+.-|+.|..+++.+++++++...+|...+++.+...+.++ +++||.||+.-+|-++.+.+... + +...
T Consensus 854 ~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~------~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~ 927 (1075)
T KOG2171|consen 854 KSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDS------DPEVRQAAAYGMGVLAQFGGEDYAPVCSEA 927 (1075)
T ss_pred hcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99887779999999999999999999999999999999999876 58999999999999999988764 3 4566
Q ss_pred HHHHHhcC--CCCCcHHH----HHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 001249 1011 VPAWLNCL--PIKGDLIE----AKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQ 1084 (1114)
Q Consensus 1011 ~~~~l~~L--p~~~d~~e----~~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 1084 (1114)
+|.++..+ |+.. .+| ..++..++.+++.. ++..++ +++++..|...|.-++ +.+-...++..+-.
T Consensus 928 l~~L~~~iq~~~ar-~Ee~~~ateNa~gaiaki~~~-~~~~i~-----vdqvl~~~l~~LPl~~--D~eEa~~iy~~l~~ 998 (1075)
T KOG2171|consen 928 LPLLVQVLQPPLAR-TEENRRATENAIGAIAKILLF-NPNRIP-----VDQVLPAWLSWLPLKE--DKEEAVPIYTFLSD 998 (1075)
T ss_pred HHHHHHHHcChhhh-hHHHhHHHHHHHHHHHHHHHh-CCccCc-----HHHHHHHHHHhCCCcc--chhhhhhHHHHHHH
Confidence 77766654 2222 233 45677888888854 444444 7899999999887443 23333344444433
No 6
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=3e-34 Score=313.33 Aligned_cols=969 Identities=15% Similarity=0.206 Sum_probs=627.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHH-Hhhhc----CchH---HHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCC
Q 001249 26 TLISHLMSTSNEQRSEAELLFN-LCKQQ----DPDS---LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1114)
Q Consensus 26 ~ll~~~~s~d~~~r~~Ae~~L~-~~~~~----~p~~---~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~ 97 (1114)
++++.+.|+|.+.|-.|+..|. ++++- +-+. .+..+++.|. +.+.+++++|..++.-++++ +.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~-D~ngEVQnlAVKClg~lvsK--------vk 79 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLE-DKNGEVQNLAVKCLGPLVSK--------VK 79 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhh--------ch
Confidence 8899999999999999998764 44431 1111 3566777774 67899999999999988754 56
Q ss_pred HHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCC-------CCchhhHHHHHHhhcC--CChhhHHHHHHHHH
Q 001249 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-------NGWPELLPFMFQCVSS--DSVKLQESAFLIFA 168 (1114)
Q Consensus 98 ~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~-------~~w~~ll~~l~~~~~~--~~~~~r~~al~~l~ 168 (1114)
++..+.+...|...+.+ .....|...+-.+.......-|. .-.+.+.|.+.+.+.- .....+.-++.+++
T Consensus 80 e~~le~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~ 158 (1233)
T KOG1824|consen 80 EDQLETIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILA 158 (1233)
T ss_pred HHHHHHHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHH
Confidence 77888888999888776 35555555554444444433331 2345666666666543 34457888889999
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHH
Q 001249 169 QLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATA 248 (1114)
Q Consensus 169 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~ 248 (1114)
.+...++.-+.++...++..+.-.+..+ ...||+.|+.+++.++... ....|..++..+++.+.. ...+...
T Consensus 159 d~lsr~g~ll~~fh~~il~~l~~ql~s~-R~aVrKkai~~l~~la~~~----~~~ly~~li~~Ll~~L~~---~~q~~~~ 230 (1233)
T KOG1824|consen 159 DVLSRFGTLLPNFHLSILKCLLPQLQSP-RLAVRKKAITALGHLASSC----NRDLYVELIEHLLKGLSN---RTQMSAT 230 (1233)
T ss_pred HHHHhhcccCcchHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCC---CCchHHH
Confidence 8888888877777777888887778886 8899999999999999887 345666666666655443 3456667
Q ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhcc-CCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001249 249 QEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA-ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1114)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1114)
...+++++.++...+..+..|++.+++++.+.++. ...+++.|+.+++.+..+.. +.| +.+.++.+.++..++
T Consensus 231 rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~---rcp---~ei~p~~pei~~l~l 304 (1233)
T KOG1824|consen 231 RTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR---RCP---KEILPHVPEIINLCL 304 (1233)
T ss_pred HHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH---hCh---hhhcccchHHHHHHH
Confidence 77899999999999999999999999999988732 24578899999999999998 577 356688999999999
Q ss_pred HhhcCCC-------CCc-c-cccCCCCCc-----cccCCCch---hhHHHHHHHHHHHcCCCcchHHHHHH----HHHhh
Q 001249 328 SMLLDIE-------DDP-L-WHSAETEDE-----DAGESSNY---SVGQECLDRLAIALGGNTIVPVASEQ----LPAYL 386 (1114)
Q Consensus 328 ~~l~~~~-------~~~-~-~~~~~~~~e-----d~~~~~~~---~~a~~~l~~l~~~~~~~~~~~~l~~~----l~~~l 386 (1114)
+++.+.- +|+ . +.++.+||| .|||+..| ++|++|+..+.... .+.+|.+.+. +...+
T Consensus 305 ~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR--~E~L~~~~q~l~p~lI~Rf 382 (1233)
T KOG1824|consen 305 SYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR--LEMLPDFYQTLGPALISRF 382 (1233)
T ss_pred HHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc--HHHHHHHHHHhCHHHHHHH
Confidence 9988641 111 1 111111111 13344445 56888887776443 2333333322 22222
Q ss_pred CCCChhHHHHHHHHHHHHHh------------------hcH---HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHh
Q 001249 387 AAPEWQKHHAALIALAQIAE------------------GCA---KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (1114)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~~------------------~~~---~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 445 (1114)
+..+-.+|.-.+.++-.+.. |.+ ..+.+..+.|+..+-+.+++.+-.-|..++..|..+
T Consensus 383 kEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~el 462 (1233)
T KOG1824|consen 383 KEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTEL 462 (1233)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHH
Confidence 33333333333333332221 222 245566778888888888888877889999999999
Q ss_pred HhhhchhHHhhhhhhhHHHHHhhccCCC-ChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHH
Q 001249 446 STDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGAL 524 (1114)
Q Consensus 446 ~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al 524 (1114)
...++... .++.+.++|.+...++|.. ....+..+...+...+..++++.+.||++.+.+.+..+..++-+.+-..|+
T Consensus 463 i~~lp~~l-~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL 541 (1233)
T KOG1824|consen 463 INVLPGAL-AQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEAL 541 (1233)
T ss_pred HHhCcchh-hhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHH
Confidence 98887766 7899999999999999832 234667788888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh-------hhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHH
Q 001249 525 TALASVADSSQE-------HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1114)
Q Consensus 525 ~~l~~l~~~~~~-------~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~ 597 (1114)
.+...+++...+ ++.||+..++....+.+... +.++++|.+||.|+|.+...+| +....+++.+++.+..
T Consensus 542 ~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~--d~DqeVkeraIscmgq~i~~fg-D~l~~eL~~~L~il~e 618 (1233)
T KOG1824|consen 542 LVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKAT--DSDQEVKERAISCMGQIIANFG-DFLGNELPRTLPILLE 618 (1233)
T ss_pred HHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHH
Confidence 999999988753 35689998888888887653 3467899999999999999999 7788889999998887
Q ss_pred HhcCCCCCCCchhhHHHHHHHHHHHH-hccCCccchhhhhHHHHHhccCCCCcc------c------cCCCCcccccCCC
Q 001249 598 LQGSQMETDDPTTSYMLQAWARLCKC-LGQDFLPYMSVVMPPLLQSAQLKPDVT------I------TSADSDNEIEDSD 664 (1114)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~i~~~ll~~~~~~~~~~------~------~~~~~~~~~~~~~ 664 (1114)
-..+ +.-|-.+.+++..++.. +.-+..|.+..+++.+...+....... . ...+. -.
T Consensus 619 Rl~n-----EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~------~~ 687 (1233)
T KOG1824|consen 619 RLGN-----EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDS------IP 687 (1233)
T ss_pred HHhc-----hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cc
Confidence 4432 45677788888777654 334466777777777766653211000 0 00000 00
Q ss_pred CcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhccccc--------------------
Q 001249 665 DDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-------------------- 724 (1114)
Q Consensus 665 ~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~-------------------- 724 (1114)
.+..+.+ +++-.--+..+.+...+.|+.++..++...+..+.-....+++.++.++..+
T Consensus 688 ~~~~e~v-L~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t 766 (1233)
T KOG1824|consen 688 AELLEAV-LVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVIT 766 (1233)
T ss_pred HHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhc
Confidence 0000000 0000000122233344556666666665544443333333333333333221
Q ss_pred -----------------C----CHHHHHHHHHhHHHHHHHHHHH---------------HHcC---------------CC
Q 001249 725 -----------------F----HEEVRKAAVSAMPELLRSAKLA---------------IEKG---------------LA 753 (1114)
Q Consensus 725 -----------------~----~~~vr~~a~~al~~l~~~~~~~---------------~~~~---------------~~ 753 (1114)
. ...+-+.|..+++..+.....+ +.+. ..
T Consensus 767 ~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl 846 (1233)
T KOG1824|consen 767 KEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGEL 846 (1233)
T ss_pred CCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhh
Confidence 0 1112233332222222111100 0000 00
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHH---------------------------------HHHHHHHHh
Q 001249 754 -PGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLD---------------------------------SLNECIQIS 799 (1114)
Q Consensus 754 -~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~---------------------------------~l~~~l~~~ 799 (1114)
.+.+......+.+ .+++.+++ +..++..++-. ++.+++...
T Consensus 847 gr~~~~s~~~e~~~----~iieaf~s-p~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~ 921 (1233)
T KOG1824|consen 847 GRRKDLSPQNELKD----TIIEAFNS-PSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSA 921 (1233)
T ss_pred ccCCCCCcchhhHH----HHHHHcCC-ChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHh
Confidence 0001001111111 12233322 33344443333 333333332
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhH
Q 001249 800 GPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFF 879 (1114)
Q Consensus 800 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 879 (1114)
.. ....+.++.++.+|.+.. +-.++..+.-+++|+|.++-.-++..
T Consensus 922 sv----d~~~~~v~~IW~lL~k~c--------------------------E~~eegtR~vvAECLGkL~l~epesL---- 967 (1233)
T KOG1824|consen 922 SV----DGLKPYVEKIWALLFKHC--------------------------ECAEEGTRNVVAECLGKLVLIEPESL---- 967 (1233)
T ss_pred cc----chhhhhHHHHHHHHHHhc--------------------------ccchhhhHHHHHHHhhhHHhCChHHH----
Confidence 21 122223333333333211 11234457889999999998766655
Q ss_pred HHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCch
Q 001249 880 DELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVK 959 (1114)
Q Consensus 880 ~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~ 959 (1114)
+|.+-..+ .+..+..|..++.++...+..-++.+.++..+.+..++..++|+|..||+.|...+...+.+-+.-+.
T Consensus 968 ---lpkL~~~~-~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIr 1043 (1233)
T KOG1824|consen 968 ---LPKLKLLL-RSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIR 1043 (1233)
T ss_pred ---HHHHHHHh-cCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHH
Confidence 44443333 35567789989988887776666777788999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHHhhcCC------------CCCChhhhhhHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHH
Q 001249 960 PLVGEALSRLNVVIRHP------------NALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEA 1027 (1114)
Q Consensus 960 ~~~~~~l~~L~~~l~~~------------~~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~~~~~l~~Lp~~~d~~e~ 1027 (1114)
..+++++|.|+.--.-. ++..|+....|..|..|+..++..+-+.+++.+++...-..|... .+-+
T Consensus 1044 DllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh--ydiK 1121 (1233)
T KOG1824|consen 1044 DLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH--YDIK 1121 (1233)
T ss_pred HHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh--hHHH
Confidence 99999999998654311 233467789999999999999999888888888888666666432 3445
Q ss_pred HHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCC--------CCC-CHHHHHHHHHHHHHH
Q 001249 1028 KIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGK--------DLA-TEQTLSRIVNLLKQL 1085 (1114)
Q Consensus 1028 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~~~~l~~~--------~~~-~~~~~~~~~~~l~~~ 1085 (1114)
.-.|..+.++....+..++. .++++++-+...+.-+ +.+ ..+++....+.+..+
T Consensus 1122 mlt~l~l~rLa~lcPs~Vlq----rlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L 1184 (1233)
T KOG1824|consen 1122 MLTFLMLARLADLCPSAVLQ----RLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAAL 1184 (1233)
T ss_pred HHHHHHHHHHHhhCcHHHHH----HHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHH
Confidence 66777788887654444544 4777777777666521 111 245677766777666
No 7
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-31 Score=292.05 Aligned_cols=689 Identities=15% Similarity=0.196 Sum_probs=463.7
Q ss_pred CChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC--
Q 001249 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-- 95 (1114)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~-- 95 (1114)
||.+.+.++++++..+|.+.|+.||++|+++.+ .|. |++.|++++.+ +.+-.+||.|++.|||.|.+. |+.
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K-~pg-Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~----W~~~~ 74 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEK-QPG-FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKS----WSSHE 74 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhc-CCc-HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhc----CCccC
Confidence 788999999999999999999999999999999 686 57999999987 557788999999999999998 653
Q ss_pred -------CCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHH
Q 001249 96 -------LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFA 168 (1114)
Q Consensus 96 -------l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~ 168 (1114)
+.++.|..+|..++..+.. .+..+|.....++..|.+.++| +.||++++.+...+++++...--+|+.++.
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~-~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~ 152 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQ-VPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLY 152 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHH
Confidence 6789999999999999997 5888999999999999999999 899999999999999999999999999999
Q ss_pred Hhhhhhh-----------hhhhhhHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHHh-cCC-cchHhHHHhhHHHHH
Q 001249 169 QLSQYIG-----------DTLTPHLKHLHAVFLNCLTNS--NNPDVKIAALNAVINFIQC-LTS-SADRDRFQDLLPLMM 233 (1114)
Q Consensus 169 ~l~~~~~-----------~~~~~~~~~l~~~l~~~l~~~--~~~~vr~~a~~~l~~l~~~-~~~-~~~~~~~~~l~p~ll 233 (1114)
.+++... ..+...++.+++.+.+.+..+ .+....+..++.+..++.+ ++. -...+.|..++..++
T Consensus 153 qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l 232 (1010)
T KOG1991|consen 153 QLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFL 232 (1010)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHH
Confidence 9997532 123335566666666677665 2344556667766666654 221 113455666666666
Q ss_pred HHHHHHHh----CCCHH---------HHHHHHHHHHHHHccchH--------------HHHHHHHHHHHHHHHHhcc---
Q 001249 234 RTLTESLN----NGNEA---------TAQEALELLIELAGTEPR--------------FLRRQLVDVVGSMLQIAEA--- 283 (1114)
Q Consensus 234 ~~l~~~~~----~~~~~---------~~~~~~~~l~~l~~~~~~--------------~~~~~~~~l~~~ll~~~~~--- 283 (1114)
.++.+.+. .-+++ ..+-|+..+..+.+.+++ ++..+.+.+.+.+++++..
T Consensus 233 ~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~ 312 (1010)
T KOG1991|consen 233 SILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQ 312 (1010)
T ss_pred HHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66543321 11333 446678888887776532 1234455666666665421
Q ss_pred -CCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHH-HHHHHhhcCCCCC-cccccCCCC------CccccCCCc
Q 001249 284 -ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLF-AILMSMLLDIEDD-PLWHSAETE------DEDAGESSN 354 (1114)
Q Consensus 284 -~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~-~~l~~~l~~~~~~-~~~~~~~~~------~ed~~~~~~ 354 (1114)
.-..+++-..++.++..++.. ..+++.+.|++.-++ ..++++|+..++| +.|..++.| |--++..++
T Consensus 313 ~~yls~rvl~~~l~fl~~~Vs~----~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp 388 (1010)
T KOG1991|consen 313 QLYLSDRVLYYLLNFLEQCVSH----ASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSP 388 (1010)
T ss_pred cccCCHHHHHHHHHHHHHhccH----HHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCC
Confidence 124566667777777777663 345666777777765 4667788866544 458765532 111335566
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhC--------CCChhHHHHHHHHHHHHHhhcH--HHHHHhHHH-HHHHH
Q 001249 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--------APEWQKHHAALIALAQIAEGCA--KVMVKNLEQ-VLSMV 423 (1114)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--------~~~~~~r~aal~~l~~l~~~~~--~~~~~~l~~-i~~~l 423 (1114)
..+|..++-.++...| +..+|.+++++.+.+. ..+.+.+++|++++|.+++-.. ..++..+.. +++.+
T Consensus 389 ~~Aa~~~l~~~~~KR~-ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV 467 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRG-KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV 467 (1010)
T ss_pred cHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence 7788888888888887 7888989998888775 2468999999999999996543 244556654 56889
Q ss_pred HhcCCCCChhHHHHHHHHHHHhH-hhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc--ccccCc
Q 001249 424 LNSFRDPHPRVRWAAINAIGQLS-TDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPY 500 (1114)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~-~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~l~~~ 500 (1114)
++.++++--..|..|||.+++++ ..++. ...+.+++....++|.+.++-.||..|.-||..|+.+... +.+.++
T Consensus 468 fP~f~s~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h 544 (1010)
T KOG1991|consen 468 FPEFQSPYGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH 544 (1010)
T ss_pred hHhhcCchhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence 99999999999999999999999 45554 3467788888899988327778999999999999998753 347899
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHH----hhc--cCccchhhhHHHHHHHH-
Q 001249 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL----VNA--TDKSNRMLRAKSMECIS- 573 (1114)
Q Consensus 501 l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l----~~~--~~~~~~~lr~~a~~~l~- 573 (1114)
++.+|+.|+++.+...... .-.++..++...++.+.||...+...|...+ ++. .++....-...|+.++.
T Consensus 545 vp~~mq~lL~L~ne~End~---Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNEVENDD---LTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 9999999999988766533 4456677788888889999888877776543 321 11111111222333333
Q ss_pred --HHHHHhch--hhhh---hhHHHHHHHHHH------------HhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhh
Q 001249 574 --LVGMAVGK--DKFR---DDAKQVMEVLMS------------LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSV 634 (1114)
Q Consensus 574 --~i~~~~~~--~~f~---~~~~~i~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 634 (1114)
.+..++.. +.+. |-+-.++..++. +..+..--...+...+.+.|.-+.+++.+.-..|++.
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d 701 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTD 701 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33333331 1121 122222222221 1110000011134455555666666666666778888
Q ss_pred hhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Q 001249 635 VMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVA 714 (1114)
Q Consensus 635 i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~ 714 (1114)
++|.+-+.+....+......+ ...--++... +...-.+....+.+.|++.+..++.+|++.+..|++-.+
T Consensus 702 ~~~~l~N~vt~g~~~~~s~~~-------y~~il~~i~~---~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~ 771 (1010)
T KOG1991|consen 702 MMPALHNYVTYGTPSLLSNPD-------YLQILLEIIK---KVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFL 771 (1010)
T ss_pred HHHHHhhheeeCchhhhccch-------HHHHHHHHHH---HHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHH
Confidence 888777666553221100000 0000000000 000001122345677999999999999998888888888
Q ss_pred HHhhhcccc-cCCHHHHHHHHHh
Q 001249 715 PTLVPLLKF-YFHEEVRKAAVSA 736 (1114)
Q Consensus 715 ~~l~~~l~~-~~~~~vr~~a~~a 736 (1114)
...+..+.. ......|..+...
T Consensus 772 ~~a~~~l~~~~e~s~~~~~~leV 794 (1010)
T KOG1991|consen 772 ELALSRLTREVETSELRVMLLEV 794 (1010)
T ss_pred HHHHHHHhccccchHHHHHHHHH
Confidence 877766654 2234455555543
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-32 Score=284.18 Aligned_cols=736 Identities=18% Similarity=0.217 Sum_probs=485.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHh-ccCCcchhHHHHHHHHHHHHHHhhhccc
Q 001249 231 LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIA-EAESLEEGTRHLAIEFVITLAEARERAP 309 (1114)
Q Consensus 231 ~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~-~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 309 (1114)
.+.+.+.+. .+++.+++..+...+..+-. +| ++..++.-++ ..++.+..+|..|--.+..=.+. ..+
T Consensus 14 ql~~lLk~s-~Spn~~~~~~~~~~leq~~~-~p--------dfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~--~~~ 81 (885)
T KOG2023|consen 14 QLAQLLKNS-QSPNSETRNNVQEKLEQFNL-FP--------DFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRG--HYN 81 (885)
T ss_pred HHHHHHHhc-cCCChHHHHHHHHHHHHHhc-cc--------chhceeeEEEecccccchhHHHHhhhhHhccccc--ccc
Confidence 444554443 36788888888777766533 22 2223323222 22344566777665444332221 011
Q ss_pred hhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC
Q 001249 310 GMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP 389 (1114)
Q Consensus 310 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~ 389 (1114)
.+......|+ -..+++.+.+.+ .-.+...+-.+..++...| -...|.++|.+.+.+.++
T Consensus 82 ~~~~~~~~yi---Ks~~l~~lgd~~-----------------~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L~s~ 140 (885)
T KOG2023|consen 82 SIPSEVLDYI---KSECLHGLGDAS-----------------PLIRATVGIVITTIASTGG-LQHWPELLPQLCELLDSP 140 (885)
T ss_pred CCChHHHHHH---HHHHHhhccCch-----------------HHHHhhhhheeeeeecccc-cccchhHHHHHHHHhcCC
Confidence 1101111222 223333332211 1122223334444554444 567799999999999999
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHH-----HhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHH
Q 001249 390 EWQKHHAALIALAQIAEGCAKVMV-----KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPA 464 (1114)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~-----~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~ 464 (1114)
+....++|+.+|..+.+...+.+. +-+.-++|.++..+++++|.+|.-|..|+.++.-.-...+ ..+++.++..
T Consensus 141 d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal-~~~iD~Fle~ 219 (885)
T KOG2023|consen 141 DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQAL-YVHIDKFLEI 219 (885)
T ss_pred cccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHH-HHHHHHHHHH
Confidence 999999999999999998876554 3467789999999999999999999999999876555444 4678899999
Q ss_pred HHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh--hhhhhhhhH
Q 001249 465 LAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS--SQEHFQKYY 542 (1114)
Q Consensus 465 l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~--~~~~~~~~~ 542 (1114)
++..-+| .++.||...|.++.-+.+... +.+.||++.|++.++...++.+..|.-.|+..+-++++. .++.+.||+
T Consensus 220 lFalanD-~~~eVRk~vC~alv~Llevr~-dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l 297 (885)
T KOG2023|consen 220 LFALAND-EDPEVRKNVCRALVFLLEVRP-DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYL 297 (885)
T ss_pred HHHHccC-CCHHHHHHHHHHHHHHHHhcH-HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHH
Confidence 9998898 999999999999999998866 457899999999999999999999999999999999875 356788999
Q ss_pred hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHH-HHHHH-----Hhc---------CCCCCC-
Q 001249 543 DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM-EVLMS-----LQG---------SQMETD- 606 (1114)
Q Consensus 543 ~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~-~~l~~-----~~~---------~~~~~~- 606 (1114)
+.++|.|.+.+.-...+ . .+ +. ....+.+.|+-++=+ +-+.+ ..+ .+.+++
T Consensus 298 ~kliPvLl~~M~Ysd~D-~-~L----------L~-~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 298 DKLIPVLLSGMVYSDDD-I-IL----------LK-NNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred HHHHHHHHccCcccccc-H-HH----------hc-CccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 99999999865432111 0 00 00 011111222211111 00000 000 011111
Q ss_pred ----CchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecc
Q 001249 607 ----DPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKT 682 (1114)
Q Consensus 607 ----~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 682 (1114)
..+|.....++..++..+|++ .++.++|.+-+.+.. ++|
T Consensus 365 ~~~dWNLRkCSAAaLDVLanvf~~e---lL~~l~PlLk~~L~~--------------------~~W-------------- 407 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANVFGDE---LLPILLPLLKEHLSS--------------------EEW-------------- 407 (885)
T ss_pred ccccccHhhccHHHHHHHHHhhHHH---HHHHHHHHHHHHcCc--------------------chh--------------
Confidence 127888888899999999976 566778887777732 334
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHH
Q 001249 683 SVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVK 762 (1114)
Q Consensus 683 ~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 762 (1114)
..|++++.++|.+|++|-..|.||++.+++.++++++|. .+-||+-.|.+|++....... .....+++
T Consensus 408 ---~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~--------~~~~~~f~ 475 (885)
T KOG2023|consen 408 ---KVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQ--------DSRDEYFK 475 (885)
T ss_pred ---hhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhc--------CChHhhhH
Confidence 358899999999999999999999999999999999986 788999999999887664421 11223455
Q ss_pred HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHH-------HHhhcC
Q 001249 763 QLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRER-------AERAKA 835 (1114)
Q Consensus 763 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-------~~~~~~ 835 (1114)
+++..++..++ +.+..|..+++.+++.+....|+.+-| ++..+++.+...+.++-.+.-.. ..+..+
T Consensus 476 pvL~~ll~~ll-----D~NK~VQEAAcsAfAtleE~A~~eLVp-~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg 549 (885)
T KOG2023|consen 476 PVLEGLLRRLL-----DSNKKVQEAACSAFATLEEEAGEELVP-YLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVG 549 (885)
T ss_pred HHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHhccchhHH-HHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHH
Confidence 55544444333 346788899999999998888875544 66777777777766654322100 011111
Q ss_pred CCCChHh---------hhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhc----------CCCC-
Q 001249 836 EDFDAEE---------SELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWG----------KDKT- 895 (1114)
Q Consensus 836 ~~~d~~~---------~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~----------~~~~- 895 (1114)
...+... .+.+..-.+.|.++.- ..+|+.+++..+|..|.||...+.......+. .+..
T Consensus 550 ~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~ 628 (885)
T KOG2023|consen 550 HALNKPAYIQILMPPLIEKWELLSDSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTV 628 (885)
T ss_pred HhcCcHHHHHHhccHHHHHHHhcCcccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 1111111 0112222233444443 78999999999999999886654433332221 1111
Q ss_pred -HHHH---HHHHHHHHHHHhHhhhhhhhh--hHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHH
Q 001249 896 -AEER---RIAICIFDDVAEQCREAALKY--YETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRL 969 (1114)
Q Consensus 896 -~~~r---~~a~~~l~~~~~~~~~~~~~~--~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L 969 (1114)
..+| ..++.++.-+++.+|.++.+. -..++..++.|+.|+-|+||+.|+..+|.++..+.+++.|+...+++.|
T Consensus 629 ~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~l 708 (885)
T KOG2023|consen 629 EAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPIL 708 (885)
T ss_pred cCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 1123 347889999999999988773 3578999999999999999999999999999999999999999999998
Q ss_pred HHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhcCCCC-CcHHHHHHHHHHHHHHHhhcCCccc
Q 001249 970 NVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCLPIK-GDLIEAKIVHEQLCSMVERSDSDLL 1046 (1114)
Q Consensus 970 ~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~~~~~l~~Lp~~-~d~~e~~~~~~~l~~l~~~~~~~~~ 1046 (1114)
..-+.. ++..+..||++|+|.+....+... .+..++..+...+-.. .+....++..-++-+|- ..+|+.+
T Consensus 709 g~Nl~~------~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg-~~~Pe~v 781 (885)
T KOG2023|consen 709 GANLNP------ENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLG-YICPEEV 781 (885)
T ss_pred hhcCCh------hhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhh-ccCHHhc
Confidence 755543 367899999999999998876543 3444554444433211 12222223333333443 4567777
Q ss_pred CcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 001249 1047 GPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLL 1082 (1114)
Q Consensus 1047 ~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~l 1082 (1114)
.+ |++..++-|+..+..-. ++++....+..+.
T Consensus 782 Ap---~l~~f~~pWc~sl~~i~-DneEK~sAFrG~c 813 (885)
T KOG2023|consen 782 AP---HLDSFMRPWCTSLRNID-DNEEKESAFRGLC 813 (885)
T ss_pred ch---hHHHHHHHHHHHhcccc-cchhHHHHHHHHH
Confidence 77 89999999999886322 2344444444443
No 9
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=9.2e-27 Score=255.20 Aligned_cols=840 Identities=15% Similarity=0.184 Sum_probs=553.9
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCC
Q 001249 61 LAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENG 140 (1114)
Q Consensus 61 L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~ 140 (1114)
|++-+ ++.+.++|.||.--|-+.+.+. -.+++.+.-..+...+++.|.+ .+.+|++-+..|+|.+++. .+..+
T Consensus 10 Llekm-tssDKDfRfMAtsDLm~eLqkd----si~Ld~dSe~kvv~~lLklL~D-~ngEVQnlAVKClg~lvsK-vke~~ 82 (1233)
T KOG1824|consen 10 LLEKM-TSSDKDFRFMATSDLMTELQKD----SIKLDDDSERKVVKMLLKLLED-KNGEVQNLAVKCLGPLVSK-VKEDQ 82 (1233)
T ss_pred HHHHc-cCCCcchhhhhHHHHHHHHHhh----hhhccccchhHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHhh-chHHH
Confidence 33433 3678899999999999988876 4457777777778899999997 7999999999999999986 34467
Q ss_pred chhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhh----hh-hhHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHH
Q 001249 141 WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT----LT-PHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQ 214 (1114)
Q Consensus 141 w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~----~~-~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~ 214 (1114)
...+...|...+-++....|..+...|..+.-.+++. +. ..+..+.|.+.+++... ....++..++..+..+..
T Consensus 83 le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 83 LETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred HHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 7788888888877888888888888887777766642 22 25667777777766543 244588888888888887
Q ss_pred hcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHH
Q 001249 215 CLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLA 294 (1114)
Q Consensus 215 ~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a 294 (1114)
.+.. .+..+-+.++..+...++++...+|+.++.+++.++...+... ...+++.+++-++++.....+| ..
T Consensus 163 r~g~-----ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~l---y~~li~~Ll~~L~~~~q~~~~r-t~ 233 (1233)
T KOG1824|consen 163 RFGT-----LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDL---YVELIEHLLKGLSNRTQMSATR-TY 233 (1233)
T ss_pred hhcc-----cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHhccCCCCchHHHH-HH
Confidence 6532 1111222455555555667778899999999999988766543 3455666666666554444455 45
Q ss_pred HHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcc
Q 001249 295 IEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTI 374 (1114)
Q Consensus 295 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~ 374 (1114)
+.++.++++. .. .++..++..++|.+.++....+++ ++..+....++++.+-...+ +.+
T Consensus 234 Iq~l~~i~r~---ag---~r~~~h~~~ivp~v~~y~~~~e~~--------------dDELrE~~lQale~fl~rcp-~ei 292 (1233)
T KOG1824|consen 234 IQCLAAICRQ---AG---HRFGSHLDKIVPLVADYCNKIEED--------------DDELREYCLQALESFLRRCP-KEI 292 (1233)
T ss_pred HHHHHHHHHH---hc---chhhcccchhhHHHHHHhcccccC--------------cHHHHHHHHHHHHHHHHhCh-hhh
Confidence 6888888884 21 245678889999999887554221 11145566677777776665 443
Q ss_pred ---hHHHHHHHHHhhC----------------------------------CCChhHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001249 375 ---VPVASEQLPAYLA----------------------------------APEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1114)
Q Consensus 375 ---~~~l~~~l~~~l~----------------------------------~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 417 (1114)
.|.+++.+.++++ |-+|++|+||..++..++....+.+-....
T Consensus 293 ~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q 372 (1233)
T KOG1824|consen 293 LPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQ 372 (1233)
T ss_pred cccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4445555544432 113999999999999999988888888888
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchh--------------------HHhhhhhhhHHHHHhhccCCCChhH
Q 001249 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD--------------------LQNQFHPQVLPALAGAMDDFQNPRV 477 (1114)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--------------------~~~~~~~~il~~l~~~l~~~~~~~v 477 (1114)
.+-|.++..+++....|+...+.+.-.+....++. +.....+-++..+-+.+.+ .+-..
T Consensus 373 ~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~-ks~kt 451 (1233)
T KOG1824|consen 373 TLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLRE-KSVKT 451 (1233)
T ss_pred HhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhh-ccccc
Confidence 89999999999999999998888877766544321 1112233455555555555 45556
Q ss_pred HHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCC--hhHHHHHHHHHHH-HHHhhhhhhhhhHhhhhHHHHHHHh
Q 001249 478 QAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALAS-VADSSQEHFQKYYDAVMPFLKAILV 554 (1114)
Q Consensus 478 ~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~--~~v~~~al~~l~~-l~~~~~~~~~~~~~~i~~~L~~~l~ 554 (1114)
+..+...|..++...+ ..+.+|++.++|.+...+++.+ ...+..++..+.. ++.+.++.|.||.+.+.|++.....
T Consensus 452 ~~~cf~lL~eli~~lp-~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~ 530 (1233)
T KOG1824|consen 452 RQGCFLLLTELINVLP-GALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVG 530 (1233)
T ss_pred hhhHHHHHHHHHHhCc-chhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhc
Confidence 7788888888888776 4578999999999999998764 4566666666655 4555567899999999998888765
Q ss_pred hccCccchhhhHHHHHHHHHHHHHhch------hhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCC
Q 001249 555 NATDKSNRMLRAKSMECISLVGMAVGK------DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDF 628 (1114)
Q Consensus 555 ~~~~~~~~~lr~~a~~~l~~i~~~~~~------~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 628 (1114)
+ ....+...|+-....+.+.+.+ -.+.||+.+++...++.... .+.|..+|+.++.|++.+...+|+..
T Consensus 531 d----~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a-~d~DqeVkeraIscmgq~i~~fgD~l 605 (1233)
T KOG1824|consen 531 D----PFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKA-TDSDQEVKERAISCMGQIIANFGDFL 605 (1233)
T ss_pred C----chHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 4 2445556666666666665432 23578999998887764332 24566799999999999999999999
Q ss_pred ccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHH-hhhhcc
Q 001249 629 LPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADE-LKEGFF 707 (1114)
Q Consensus 629 ~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~-~~~~~~ 707 (1114)
...+|.+++.+++.++.++ .|..|.+++..++.. +.-.+.
T Consensus 606 ~~eL~~~L~il~eRl~nEi---------------------------------------TRl~AvkAlt~Ia~S~l~i~l~ 646 (1233)
T KOG1824|consen 606 GNELPRTLPILLERLGNEI---------------------------------------TRLTAVKALTLIAMSPLDIDLS 646 (1233)
T ss_pred hhhhHHHHHHHHHHHhchh---------------------------------------HHHHHHHHHHHHHhccceeehh
Confidence 9999999999999995421 467888899988875 334467
Q ss_pred ccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHH
Q 001249 708 PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICAS 787 (1114)
Q Consensus 708 p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 787 (1114)
|.+.++++.+...+... +...|.+...++..|+...... .+ ...++.++..+...+ .+.+-.+..-
T Consensus 647 ~~l~~il~~l~~flrK~-~r~lr~~~l~a~~~L~~~~~~~---------~~---~~~~e~vL~el~~Li-sesdlhvt~~ 712 (1233)
T KOG1824|consen 647 PVLTEILPELASFLRKN-QRALRLATLTALDKLVKNYSDS---------IP---AELLEAVLVELPPLI-SESDLHVTQL 712 (1233)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcc---------cc---HHHHHHHHHHhhhhh-hHHHHHHHHH
Confidence 88888888887776642 5566777777777777655211 11 122223332222222 2233333222
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHH-------HHHHh--hcCCCCChHhhhhh-h----h--hhH
Q 001249 788 MLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKR-------ERAER--AKAEDFDAEESELI-K----E--ENE 851 (1114)
Q Consensus 788 ~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------~~~~~--~~~~~~d~~~~~~~-~----e--~~~ 851 (1114)
++..+..+... .+..-.....++++.++..+.+.+-.-. .++.- .+.++.|=...... . + ...
T Consensus 713 a~~~L~tl~~~-~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~ 791 (1233)
T KOG1824|consen 713 AVAFLTTLAII-QPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDG 791 (1233)
T ss_pred HHHHHHHHHhc-ccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccc
Confidence 33222222111 1100011223344444444433321100 00000 11222220000000 0 0 011
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHh
Q 001249 852 QEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEA 931 (1114)
Q Consensus 852 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~ 931 (1114)
-....+...+.|...+...+++.-.+....+..-+. ....+...|.+|+-.+|++..+.+.. +...+...++++
T Consensus 792 l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~---s~~s~~~ikvfa~LslGElgr~~~~s---~~~e~~~~iiea 865 (1233)
T KOG1824|consen 792 LHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQ---SPKSSDSIKVFALLSLGELGRRKDLS---PQNELKDTIIEA 865 (1233)
T ss_pred hhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHh---CCCCchhHHHHHHhhhhhhccCCCCC---cchhhHHHHHHH
Confidence 234556678899999999888665444444444332 23456778999999999987665432 344556688999
Q ss_pred ccCCChhHHhhhhHHHHHHHhhcCCCchHHHHH-----------HHHHHHHhhcCCCCCC-----------------hhh
Q 001249 932 CNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGE-----------ALSRLNVVIRHPNALQ-----------------PEN 983 (1114)
Q Consensus 932 l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~-----------~l~~L~~~l~~~~~~~-----------------~~~ 983 (1114)
+++++.+|+.+|+|+||.++-..-+.|.|++-+ +++.|+.++....... ...
T Consensus 866 f~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~e 945 (1233)
T KOG1824|consen 866 FNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAE 945 (1233)
T ss_pred cCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccch
Confidence 999999999999999999998776777776521 5677777775432210 123
Q ss_pred hhhHHHHHHHHHHHHhhcCCC
Q 001249 984 LMAYDNAVSALGKICQFHRDS 1004 (1114)
Q Consensus 984 ~~~~~na~~al~~l~~~~~~~ 1004 (1114)
...|..++.|+|+++...|+.
T Consensus 946 egtR~vvAECLGkL~l~epes 966 (1233)
T KOG1824|consen 946 EGTRNVVAECLGKLVLIEPES 966 (1233)
T ss_pred hhhHHHHHHHhhhHHhCChHH
Confidence 456888999999999888764
No 10
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.5e-25 Score=241.53 Aligned_cols=748 Identities=17% Similarity=0.216 Sum_probs=511.3
Q ss_pred HhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhh------
Q 001249 240 LNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMR------ 313 (1114)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~------ 313 (1114)
.-++|+..++.+-.-|-.+... .++.++..+...+.+.......|..|--.+..-... +.|....
T Consensus 10 tlSpD~n~~~~Ae~~l~~~~~~-------nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~a--kd~~~k~~~~qRW 80 (859)
T KOG1241|consen 10 TLSPDQNVRKRAEKQLEQAQSQ-------NFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTA--KDPERKQQYQQRW 80 (859)
T ss_pred HcCCCcchHHHHHHHHHHHHhc-------cHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhcc--CCHHHHHHHHHHH
Confidence 3467888888887777666543 234444444555555555667787765444433222 1111100
Q ss_pred -cchhhH-HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCh
Q 001249 314 -KLPQFI-NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEW 391 (1114)
Q Consensus 314 -~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~ 391 (1114)
.++.-+ +.+-..++..|..+ +......|++++..++..-=|...+|.+++.+.....+...
T Consensus 81 l~l~~e~reqVK~~il~tL~~~-----------------ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~ 143 (859)
T KOG1241|consen 81 LQLPAEIREQVKNNILRTLGSP-----------------EPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQA 143 (859)
T ss_pred HcCCHHHHHHHHHHHHHHcCCC-----------------CCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccc
Confidence 111111 22223333444332 22345678899998886533467889899888887766544
Q ss_pred -hHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCC--CCChhHHHHHHHHHHHhHhhhchhHHhh-hhhhhHHHHH
Q 001249 392 -QKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFR--DPHPRVRWAAINAIGQLSTDLGPDLQNQ-FHPQVLPALA 466 (1114)
Q Consensus 392 -~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~il~~l~ 466 (1114)
.+|++++.++|.+++... +.+..+...++..++.+.+ .++..||-+|..+|-.-.+..+..+..+ .-+-++..++
T Consensus 144 ~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvc 223 (859)
T KOG1241|consen 144 SMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVC 223 (859)
T ss_pred hHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeee
Confidence 599999999999999765 5666778889999998886 4677999999999987666555444222 2445778888
Q ss_pred hhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHH-HHHHHHHHhhcCChhHHHHHHHHHHHHHHhh-------hhhh
Q 001249 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG-IVSKLLVLLQNGKQMVQEGALTALASVADSS-------QEHF 538 (1114)
Q Consensus 467 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~-il~~L~~~l~~~~~~v~~~al~~l~~l~~~~-------~~~~ 538 (1114)
+.-+. ++.+++.+|..+|..+..-.= +.+.+|... ++..-+..+.+.+.+|.-.++...+++++.- ++.+
T Consensus 224 Eatq~-~d~~i~~aa~~ClvkIm~LyY-~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~ 301 (859)
T KOG1241|consen 224 EATQS-PDEEIQVAAFQCLVKIMSLYY-EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAV 301 (859)
T ss_pred ecccC-CcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888 899999999999988876432 456777766 7777788888999999999999999887531 2222
Q ss_pred hhhH------------hhhhHHHHHHHhhc---cCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHH-HhcCC
Q 001249 539 QKYY------------DAVMPFLKAILVNA---TDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQGSQ 602 (1114)
Q Consensus 539 ~~~~------------~~i~~~L~~~l~~~---~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~-~~~~~ 602 (1114)
..+. +.++|.|.+.+.+. .+++++.....|-.|+..+++.+| +.+.|+ +++++-. +.+
T Consensus 302 d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~-D~Iv~~---Vl~Fiee~i~~-- 375 (859)
T KOG1241|consen 302 DQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG-DDIVPH---VLPFIEENIQN-- 375 (859)
T ss_pred hcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc-ccchhh---hHHHHHHhcCC--
Confidence 2233 37899999998872 223456666677889999999999 666664 4444443 222
Q ss_pred CCCCCchhhHHHHHHHHHHHHhc-cCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeec
Q 001249 603 METDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIK 681 (1114)
Q Consensus 603 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 681 (1114)
.+..-|+.+.-+||.+-..-. ....|+.+..+|.+++.+. |+...
T Consensus 376 --pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~------------------------------- 421 (859)
T KOG1241|consen 376 --PDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS-DPSLW------------------------------- 421 (859)
T ss_pred --cchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc-Cchhh-------------------------------
Confidence 345567777778887655432 3378999999999998885 43322
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhccc--cHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHH
Q 001249 682 TSVLEEKATACNMLCCYADELKEGFFP--WIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNES 759 (1114)
Q Consensus 682 ~~~~~~k~~A~~~l~~~~~~~~~~~~p--~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~ 759 (1114)
.|.++--++|.+++.++....| |+...++.++..+.+ ++.+-.++|.++..|...+..+.... |..+
T Consensus 422 -----VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~---~qt~- 490 (859)
T KOG1241|consen 422 -----VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSN---GQTD- 490 (859)
T ss_pred -----hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCC---CCCC-
Confidence 2334445899999988766554 567788888888886 57888888999888887765443221 1111
Q ss_pred HHHHHHHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCC
Q 001249 760 YVKQLSDFIIPALVEALHKE--PDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAED 837 (1114)
Q Consensus 760 ~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 837 (1114)
...+++..++..|++.-... .+...+.+++++|.++++.+.. ...+.+..+..++...+...-.. +.
T Consensus 491 ~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~-----~vy~~v~~~~l~il~kl~q~i~~--~~---- 559 (859)
T KOG1241|consen 491 PATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD-----DVYPMVQKLTLVILEKLDQTISS--QI---- 559 (859)
T ss_pred ccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH-----HHHHHHHHHHHHHHHHHHHHHHH--Hh----
Confidence 12366777777777765432 3567899999999999988663 22222333322222222211110 00
Q ss_pred CChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhh
Q 001249 838 FDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAA 917 (1114)
Q Consensus 838 ~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~ 917 (1114)
.+.+|. +.-.++....+.+++.+.+..++++.++.+.++..++.+++..++.-....|+..++.+++++|..+
T Consensus 560 l~~~dr-------~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F 632 (859)
T KOG1241|consen 560 LSLADR-------AQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGF 632 (859)
T ss_pred ccHhhH-------HHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhH
Confidence 000111 1235567778999999999999999999999999999888765566667789999999999999999
Q ss_pred hhhhHhHHHHHHHhccC-CChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHH
Q 001249 918 LKYYETYLPFLLEACND-ENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGK 996 (1114)
Q Consensus 918 ~~~~~~i~~~ll~~l~~-~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~ 996 (1114)
.+|++.|.|.+..+|.+ .+..|+.+|+..+|.+++..++.+.||...+++.|.+.|+++.. ++.++-.+.+++|-
T Consensus 633 ~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~----hR~vKP~IlS~FgD 708 (859)
T KOG1241|consen 633 AKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNL----HRNVKPAILSVFGD 708 (859)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccc----cccccchHHHHHHH
Confidence 99999999999999954 78899999999999999999999999999999999999998853 46788889999999
Q ss_pred HHhhcCCCC--CHhhHHHHHHhcC---CCCCcHH--H-----HHH---HHHHHHHHHh-hcCCcccCcCcCchhHHHHHH
Q 001249 997 ICQFHRDSI--DAAQVVPAWLNCL---PIKGDLI--E-----AKI---VHEQLCSMVE-RSDSDLLGPNHQYLPKIVSVF 1060 (1114)
Q Consensus 997 l~~~~~~~~--~~~~~~~~~l~~L---p~~~d~~--e-----~~~---~~~~l~~l~~-~~~~~~~~~~~~~l~~i~~~~ 1060 (1114)
|...-+..+ ++..+++.+-+.= +...|++ + +.. +|.++..=+. ...+..+.+ ++|.|++++
T Consensus 709 IAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p---~v~~I~sfi 785 (859)
T KOG1241|consen 709 IALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQP---YVPHIISFI 785 (859)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhc---chHHHHHHH
Confidence 998877766 5777777654432 2222221 1 222 3333333221 112333333 799999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhhCChh
Q 001249 1061 AEILCGKDLATEQTLSRIVNLLKQLQQTLPPA 1092 (1114)
Q Consensus 1061 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1092 (1114)
..+-...+ .++.+......++..+...||+.
T Consensus 786 ~~I~~e~~-~~~~~~~~a~GlIgDL~~~fg~~ 816 (859)
T KOG1241|consen 786 DRIAAEPD-VSEALHAAALGLIGDLATMFGKG 816 (859)
T ss_pred HHHhcCcc-cchHHHHHHHHHHHHHHHHcccc
Confidence 88775443 36778888899999999999943
No 11
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.5e-25 Score=238.98 Aligned_cols=601 Identities=17% Similarity=0.250 Sum_probs=401.4
Q ss_pred ChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCccc----
Q 001249 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP---- 94 (1114)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~---- 94 (1114)
+.+++.+.|.+..+||+++|+.||..|++... ++. |...+++++.+ ..++++|..|++.+||.++++ |.
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~-q~~-y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~----W~~~~~ 76 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEG-QQN-YPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRN----WIPAED 76 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhcc-CCC-chHHHHHHHhccCcChhHHHHHHHHHHHHHHhc----cCcCCC
Confidence 56789999999999999999999999999988 554 67788999987 459999999999999999998 63
Q ss_pred ---CCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhh
Q 001249 95 ---RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1114)
Q Consensus 95 ---~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~ 171 (1114)
++.++.++.+|..++..+.+ ....++..++++++.|+++++| +.||+|+|.+...+++.|-++-.+.+..-..+.
T Consensus 77 ~~~~i~~~~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiF 154 (960)
T KOG1992|consen 77 SPIKIIEEDREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIF 154 (960)
T ss_pred CccccchhHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 57888999999999999997 5789999999999999999999 899999999999999999888888888888888
Q ss_pred hhhhhhhhh---------hHH----HHHHHHHHhhc----CCCChH---HHHHHHHHHHHHHHhcCCcchHhHHHhhHHH
Q 001249 172 QYIGDTLTP---------HLK----HLHAVFLNCLT----NSNNPD---VKIAALNAVINFIQCLTSSADRDRFQDLLPL 231 (1114)
Q Consensus 172 ~~~~~~~~~---------~~~----~l~~~l~~~l~----~~~~~~---vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ 231 (1114)
+.....++. .++ .+..+|.+... .+++.. +-...+..+..+...+...+-++-|.+.+..
T Consensus 155 kr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~ 234 (960)
T KOG1992|consen 155 KRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKT 234 (960)
T ss_pred HhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHH
Confidence 765432211 111 22333333221 111211 1223333333444444333345566666666
Q ss_pred HHHHHHHHHhCCC-------------HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCc---chhHHHHHH
Q 001249 232 MMRTLTESLNNGN-------------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESL---EEGTRHLAI 295 (1114)
Q Consensus 232 ll~~l~~~~~~~~-------------~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~---~~~vr~~a~ 295 (1114)
.|..+.+.+...+ ...+...|+.+.-.+..+.+.|.+++++++...+.++..... -+.....|+
T Consensus 235 wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al 314 (960)
T KOG1992|consen 235 WMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKAL 314 (960)
T ss_pred HHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 6666666554211 135667899999999999999999999999888877643222 244667899
Q ss_pred HHHHHHHHhhhccchhhhcchhhHHHHHHH-HHHhhc-CCCCCcccccCCC-----CCccccCCCchhhHHHHHHHHHHH
Q 001249 296 EFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLL-DIEDDPLWHSAET-----EDEDAGESSNYSVGQECLDRLAIA 368 (1114)
Q Consensus 296 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~-~~~~~~~~~~~~~-----~~ed~~~~~~~~~a~~~l~~l~~~ 368 (1114)
+|+.++++...+. +.+. ..+.+..+... +++.+. ..+|.+-++.+.. |-|..|.++.+++|.+.+..|+..
T Consensus 315 ~FLt~V~~r~~y~-~~F~-~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~ 392 (960)
T KOG1992|consen 315 QFLTSVSRRPHYA-ELFE-GENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKN 392 (960)
T ss_pred HHHHHHHhhhhhH-hhhc-chHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHH
Confidence 9999999843221 1111 12233333221 111111 1122111111110 112233445678899999999988
Q ss_pred cCCCcchHHHHHHHHHhhC------CCChhHHHHHHHHHHHHHhhcHH---------HHHHhH----HHHHHHHHhcCCC
Q 001249 369 LGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAK---------VMVKNL----EQVLSMVLNSFRD 429 (1114)
Q Consensus 369 ~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~~---------~~~~~l----~~i~~~l~~~l~d 429 (1114)
+. ..+.+.+...+...+. |.+|+.+..++..+.+++..... .+.+.. ..++|.+...=..
T Consensus 393 fe-~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn 471 (960)
T KOG1992|consen 393 FE-GQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVN 471 (960)
T ss_pred hc-chhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccc
Confidence 85 4666666666666665 56899999999999888754221 111112 2344444433335
Q ss_pred CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC--------CcccccCch
Q 001249 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC--------TPEILTPYL 501 (1114)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~--------~~~~l~~~l 501 (1114)
++|.++..+..-+-.+-..++ +.++-.++|.+...+.. +...|...|+.++..+.... +++.+.||.
T Consensus 472 ~~pilka~aIKy~~~FR~ql~----~~~lm~~~p~li~~L~a-~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~ 546 (960)
T KOG1992|consen 472 EFPILKADAIKYIYTFRNQLG----KEHLMALLPRLIRFLEA-ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFV 546 (960)
T ss_pred cccchhhcccceeeeecccCC----hHHHHHHHHHHHHhccC-cchHHHHHHHHHHHhccccccCccccccchhhcchHH
Confidence 678888888876655544444 45677899999999998 78888899999998876433 345678899
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhh-ccCccchhhhHHHHHHHHHHHHHhc
Q 001249 502 DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN-ATDKSNRMLRAKSMECISLVGMAVG 580 (1114)
Q Consensus 502 ~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~-~~~~~~~~lr~~a~~~l~~i~~~~~ 580 (1114)
..++..|+..+..+...--+....++-.+.....+...|+.+.++..|.+++.. ..++.....-...+|.++.+.+..+
T Consensus 547 ~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~ 626 (960)
T KOG1992|consen 547 EILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTC 626 (960)
T ss_pred HHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHh
Confidence 999999998887776555566778888888888888889999988888887664 2233334455567889988887665
Q ss_pred hhh---hhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHH
Q 001249 581 KDK---FRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPL 639 (1114)
Q Consensus 581 ~~~---f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~l 639 (1114)
+.. ...+-..+++.+..+....+ .....+++..++.+....+..+.+..-.++|.+
T Consensus 627 ~~~~~~vs~~e~aL~p~fq~Il~eDI---~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~l 685 (960)
T KOG1992|consen 627 KANPSAVSSLEEALFPVFQTILSEDI---QEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPL 685 (960)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHh
Confidence 332 34444555555444333211 235667777777777666554333333344433
No 12
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.1e-24 Score=233.25 Aligned_cols=541 Identities=15% Similarity=0.195 Sum_probs=339.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCccc-----CCC
Q 001249 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP-----RLS 97 (1114)
Q Consensus 24 l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~-----~l~ 97 (1114)
+.++|++..|||..+++-||++|+++++ +|++| +.|..+..+ +.+..+|-+|++.+||-+.+. |+ .++
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEt-qPGF~-~~L~sI~l~~t~dv~vRWmAviyfKNgIdry----WR~~~~~sl~ 75 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWET-QPGFF-SKLYSIFLSKTNDVSVRWMAVIYFKNGIDRY----WRRNTKMSLP 75 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhcc-CCcHH-HHHHHHHhccccceeeeeehhhhHhcchhHH----hhcCCcccCC
Confidence 4688999999999999999999999999 79865 888888876 667999999999999999997 75 489
Q ss_pred HHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC----ChhhHHHHHHHHHHhhhh
Q 001249 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD----SVKLQESAFLIFAQLSQY 173 (1114)
Q Consensus 98 ~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~----~~~~r~~al~~l~~l~~~ 173 (1114)
+|.|..||..++.... |+++.+..+.|.++++||+.++| ..||+++|.|.+.+++. |....+..+..+..+.+.
T Consensus 76 ~EEK~~iR~~Ll~~~~-E~~nQlaiQ~AvlisrIARlDyP-reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~ 153 (978)
T KOG1993|consen 76 PEEKDFIRCNLLLHSD-EENNQLAIQNAVLISRIARLDYP-REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKA 153 (978)
T ss_pred HHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 57999999999999999999999 89999999999998876 777888888888888876
Q ss_pred hhhh--------hhhhHHHHHHHHHHhh------------cCCC------ChHHHHHHHHHHHHHHHh-cCCcchHhHHH
Q 001249 174 IGDT--------LTPHLKHLHAVFLNCL------------TNSN------NPDVKIAALNAVINFIQC-LTSSADRDRFQ 226 (1114)
Q Consensus 174 ~~~~--------~~~~~~~l~~~l~~~l------------~~~~------~~~vr~~a~~~l~~l~~~-~~~~~~~~~~~ 226 (1114)
.+.. +.+..+.+++.+...+ ++.. ..++-..+++++..++-+ +.++...+ +.
T Consensus 154 Lat~RL~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse-~~ 232 (978)
T KOG1993|consen 154 LATKRLLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSE-FF 232 (978)
T ss_pred HHHhHHhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhh-HH
Confidence 5431 2223333433222221 1110 112223455555555433 22232222 44
Q ss_pred hhHHHHHHHHHH----HHhCCCH----HHHHHH----HHHHHHHHccchHHHHH--HHHHHHHHHHHHhccC--------
Q 001249 227 DLLPLMMRTLTE----SLNNGNE----ATAQEA----LELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAE-------- 284 (1114)
Q Consensus 227 ~l~p~ll~~l~~----~~~~~~~----~~~~~~----~~~l~~l~~~~~~~~~~--~~~~l~~~ll~~~~~~-------- 284 (1114)
+-++.+++.=.. .+..+.. +..... ...+..+.+.+|-.|.. ..+..+++.+....++
T Consensus 233 eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~ 312 (978)
T KOG1993|consen 233 ERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQIS 312 (978)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccc
Confidence 445555554111 1111111 212222 33344555555544444 3334444444433221
Q ss_pred ---CcchhHHHHHHHHHHHHHHhhhccchhhh---------------c------chhhHHHHHHHHHHh--hcCCCCCcc
Q 001249 285 ---SLEEGTRHLAIEFVITLAEARERAPGMMR---------------K------LPQFINRLFAILMSM--LLDIEDDPL 338 (1114)
Q Consensus 285 ---~~~~~vr~~a~~~l~~l~~~~~~~~~~~~---------------~------~~~~~~~l~~~l~~~--l~~~~~~~~ 338 (1114)
..-++...+++..+..+...+.+.++... + ..+-+..+...++.+ +...+|-++
T Consensus 313 ~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEe 392 (978)
T KOG1993|consen 313 GHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEE 392 (978)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 12233455666666654433222221100 0 011222233333332 112334456
Q ss_pred cccCCCC---CccccCC--CchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC---------ChhHHHHHHHHHHHH
Q 001249 339 WHSAETE---DEDAGES--SNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP---------EWQKHHAALIALAQI 404 (1114)
Q Consensus 339 ~~~~~~~---~ed~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~---------~~~~r~aal~~l~~l 404 (1114)
|..+++. +++..++ ..+-+|......+...++ +.+.|.++..+.+..+.+ ..-.+.|.+.++|..
T Consensus 393 W~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ys-qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~ 471 (978)
T KOG1993|consen 393 WTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYS-QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLA 471 (978)
T ss_pred HhcChHHhhhhcccccceeccchhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHH
Confidence 7766543 1111122 223467777777777776 678888888886554422 134566777777766
Q ss_pred HhhcHH--HHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHH
Q 001249 405 AEGCAK--VMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (1114)
Q Consensus 405 ~~~~~~--~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a 481 (1114)
+....+ .+.+.+. .++|-+. .-.+....+|...+|.+|+..+.-.+ .+.-+-+...+++.++|..+..|+.++
T Consensus 472 a~~l~~~~dF~~Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~---~e~k~l~Y~a~lnLL~d~~D~vV~Ltt 547 (978)
T KOG1993|consen 472 AYELSNILDFDKWLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQK---LELKPLLYCAFLNLLQDQNDLVVRLTT 547 (978)
T ss_pred HHHHHhcCCHHHHHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheech---HhHHHHHHHHHHHhcCccccceeehHH
Confidence 654433 1222221 2233322 11122345688999999998763221 344566777888889884478899999
Q ss_pred HHHHHHhhhc--CCcccccCchHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccC
Q 001249 482 ASAVLNFSEN--CTPEILTPYLDGIVSKLLVLLQNG-KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATD 558 (1114)
Q Consensus 482 ~~al~~l~~~--~~~~~l~~~l~~il~~L~~~l~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~ 558 (1114)
..++...++. +.++.+.||++.+...++++++.- .-..|...+..++.++..+++.+.||...++..+-.+|....
T Consensus 548 ~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~- 626 (978)
T KOG1993|consen 548 ARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE- 626 (978)
T ss_pred HHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-
Confidence 9999999986 456778899999999999888754 356778899999999999998888998888888888776532
Q ss_pred ccchhhhHHHHHHHHHHHHHhc
Q 001249 559 KSNRMLRAKSMECISLVGMAVG 580 (1114)
Q Consensus 559 ~~~~~lr~~a~~~l~~i~~~~~ 580 (1114)
+...+|.+.+.++..+..++|
T Consensus 627 -~e~lLr~alL~~L~~lV~alg 647 (978)
T KOG1993|consen 627 -EEPLLRCALLATLRNLVNALG 647 (978)
T ss_pred -cCcHHHHHHHHHHHHHHHHhc
Confidence 233455555555544444444
No 13
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.96 E-value=1.1e-23 Score=231.52 Aligned_cols=598 Identities=17% Similarity=0.240 Sum_probs=383.7
Q ss_pred CChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC--
Q 001249 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-- 95 (1114)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~-- 95 (1114)
++.+.+..+|.+++|+|.++|.+||.+|+++.. +++|-..|.++..+ ...-+.||.|.++||+.+.++ |..
T Consensus 1 ~~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~--~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~h----W~~~~ 74 (1005)
T KOG2274|consen 1 QVKQAIIELLSGSLSADQNVRSQAETQLKQLEL--TEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKH----WSPNF 74 (1005)
T ss_pred CcHHHHHHHHHhhcCCChhHHHHHHHHHhcccc--chHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHh----CCChH
Confidence 356789999999999999999999999999987 44577999999987 478899999999999999998 642
Q ss_pred --------CCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHH
Q 001249 96 --------LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIF 167 (1114)
Q Consensus 96 --------l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l 167 (1114)
.+.+.|..||..|++.+.+ ++..+|+.++.++..||..++| +.||+++|.+..++++++.+..++|+++|
T Consensus 75 E~fr~~~~~~e~~K~~IRe~Ll~~l~~-sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL 152 (1005)
T KOG2274|consen 75 EAFRYPLIVSEEVKALIREQLLNLLDD-SNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVL 152 (1005)
T ss_pred hhccCCCcccHHHHHHHHHHHHhhhhc-cccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHH
Confidence 4677899999999999995 7999999999999999999999 89999999999999999999999999999
Q ss_pred HHhhhhhhhh-h----hhhHHHHHHHHHHhhcCCCChHHHHHHH--HHHHHHHHhcCCcc------hHhHHHhhHHHHHH
Q 001249 168 AQLSQYIGDT-L----TPHLKHLHAVFLNCLTNSNNPDVKIAAL--NAVINFIQCLTSSA------DRDRFQDLLPLMMR 234 (1114)
Q Consensus 168 ~~l~~~~~~~-~----~~~~~~l~~~l~~~l~~~~~~~vr~~a~--~~l~~l~~~~~~~~------~~~~~~~l~p~ll~ 234 (1114)
..+...+... . ...+..+...+. ..... +...|..++ +.+.++..-+.... ....+.+.++.+++
T Consensus 153 ~el~~ev~~ee~~~~~~~~l~~m~~~f~-~~~~~-s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~ 230 (1005)
T KOG2274|consen 153 AELSDEVDVEEMFFVGPVSLAEMYRIFA-LTIVY-SIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMD 230 (1005)
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhhh-hcccc-chhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998776422 1 112233322221 12222 444455444 44554444332111 11234456677777
Q ss_pred HHHHHHhCC---CHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhcc--------------------CCcc----
Q 001249 235 TLTESLNNG---NEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA--------------------ESLE---- 287 (1114)
Q Consensus 235 ~l~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~--------------------~~~~---- 287 (1114)
.+.+.++-. +...+...+.++..+.+..|..+.+++...++..++.... .+.+
T Consensus 231 ~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~ 310 (1005)
T KOG2274|consen 231 ILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEK 310 (1005)
T ss_pred HHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhh
Confidence 776665432 3457788899999999999988888777766666554210 0011
Q ss_pred --hhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCC-CcccccCCC---CCccccCCCchhhHHHH
Q 001249 288 --EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIED-DPLWHSAET---EDEDAGESSNYSVGQEC 361 (1114)
Q Consensus 288 --~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~~~~~~~---~~ed~~~~~~~~~a~~~ 361 (1114)
+..-...++|+..++....-. +.+..-++.+++.+...+.-.++ -..|..+.. .+||++ .+.+..+...
T Consensus 311 ~~~~l~i~i~eF~s~i~t~~~~~----~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~-~~~~~~~rd~ 385 (1005)
T KOG2274|consen 311 SVETLVIQIVEFLSTIVTNRFLS----KTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDG-YTARISVRDL 385 (1005)
T ss_pred ChHHhhhhHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCC-chhhhhHHHH
Confidence 112346678888888752211 11122234444444444332211 123544322 122222 2333345555
Q ss_pred HHHHHHHcCCCcchHHHHHH----HHH-----hhCC-CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC-CC
Q 001249 362 LDRLAIALGGNTIVPVASEQ----LPA-----YLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DP 430 (1114)
Q Consensus 362 l~~l~~~~~~~~~~~~l~~~----l~~-----~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~ 430 (1114)
+..+...+|...+.+ +.+. +.. ..+. ..|+..++.+.+...+..+ +.....+..+...+..++. ..
T Consensus 386 ~~~v~~~f~~~~i~~-i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~--~~~dd~l~~l~~~~~~~l~~~e 462 (1005)
T KOG2274|consen 386 LLEVITTFGNEGINP-IQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRID--DANDDKLIELTIMIDNGLVYQE 462 (1005)
T ss_pred HHHHHHhccchhhhH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccC--cchHHHHHHHHHHHHhhccccc
Confidence 666666676443333 3332 211 1222 3477777777776666533 2233455566666666654 45
Q ss_pred ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHH
Q 001249 431 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (1114)
Q Consensus 431 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~ 510 (1114)
.|..-..++++++.+++...-. ......++...+..+.-...+.++.+|+.++..++ +...+.+.++.++..|.+
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~--~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~q 537 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVIN--PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQ 537 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHH
Confidence 6777779999999888764322 24455666666666554256678888888876666 667788999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHH
Q 001249 511 LLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQ 590 (1114)
Q Consensus 511 ~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~ 590 (1114)
+....+..+......+++.++..-++.-...-..+.|....++....++. .+...+-+++-.+.... ....|+...
T Consensus 538 las~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP--~V~~~~qd~f~el~q~~--~~~g~m~e~ 613 (1005)
T KOG2274|consen 538 LASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDP--QVASLAQDLFEELLQIA--ANYGPMQER 613 (1005)
T ss_pred HcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHH--HhhcchHHH
Confidence 99988888888888999888865443222233457777777776644332 34455556665555422 345677788
Q ss_pred HHHHHHHHhcCCCC-CCCchhhHHHHHHHHHHHHhccCCcc-chhhhhHHHHHhc
Q 001249 591 VMEVLMSLQGSQME-TDDPTTSYMLQAWARLCKCLGQDFLP-YMSVVMPPLLQSA 643 (1114)
Q Consensus 591 i~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~-~l~~i~~~ll~~~ 643 (1114)
.++.++.+.....+ ........++..+..+.+..+..+.. .+...+|.+.+..
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t 668 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT 668 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe
Confidence 88888775543221 11234555556666666665554322 2334455555554
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1.1e-21 Score=209.94 Aligned_cols=747 Identities=16% Similarity=0.191 Sum_probs=477.5
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchH
Q 001249 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1114)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 264 (1114)
+...++. ..+. .+..|..+++.+..=...+. ....|..++|.+++.- -+...|...+..+..+......
T Consensus 365 i~~llLk-vKNG-~ppmRk~~LR~ltdkar~~g---a~~lfnqiLpllMs~t------LeDqerhllVkvidriLyklDd 433 (1172)
T KOG0213|consen 365 IMRLLLK-VKNG-TPPMRKSALRILTDKARNFG---AGPLFNQILPLLMSPT------LEDQERHLLVKVIDRILYKLDD 433 (1172)
T ss_pred HHHHHHh-hcCC-CchhHHHHHHHHHHHHHhhc---cHHHHHHHHHHHcCcc------ccchhhhhHHHHHHHHHHhhcc
Confidence 3444443 2343 67889999998877665542 2334555555554421 1344566777777777766666
Q ss_pred HHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCC
Q 001249 265 FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (1114)
Q Consensus 265 ~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 344 (1114)
...||+..|+-.+-..+- +.+--.|...-+.+..++.. +. + ..++. .|.-.-+
T Consensus 434 lvrpYVhkILvVieplli--ded~yar~egreIisnLaka---aG-----l----a~mis----tmrpDid--------- 486 (1172)
T KOG0213|consen 434 LVRPYVHKILVVIEPLLI--DEDYYARVEGREIISNLAKA---AG-----L----ATMIS----TMRPDID--------- 486 (1172)
T ss_pred cchhceeeeEEEeeccee--cchHHHhhchHHHHHHHHHH---hh-----h----HHHHH----hhcCCcc---------
Confidence 667777665432222221 22344566677788877773 11 1 11111 1110000
Q ss_pred CCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001249 345 EDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1114)
Q Consensus 345 ~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l 423 (1114)
. .+.-.++..+.++..++.++| +|.++|++.....|. +|+.|+.++.+..+++.-.+-.+.+|+..++..+
T Consensus 487 -n---~deYVRnttarafavvasalg----ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii 558 (1172)
T KOG0213|consen 487 -N---KDEYVRNTTARAFAVVASALG----IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKII 558 (1172)
T ss_pred -c---ccHHHHHHHHHHHHHHHHHhC----cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHH
Confidence 0 011134566778888898887 678889999888887 9999999999999998865556779999999999
Q ss_pred HhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHH
Q 001249 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 503 (1114)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ 503 (1114)
-.++.|.+..||-.++.+++.+++...|.- ...++.++..|.+.+.. .-...-.+-..|++.++..+.++.-.-|-..
T Consensus 559 ~~gl~De~qkVR~itAlalsalaeaa~Pyg-ie~fDsVlkpLwkgir~-hrgk~laafLkAigyliplmd~eya~yyTre 636 (1172)
T KOG0213|consen 559 EHGLKDEQQKVRTITALALSALAEAATPYG-IEQFDSVLKPLWKGIRQ-HRGKELAAFLKAIGYLIPLMDAEYASYYTRE 636 (1172)
T ss_pred HHhhcccchhhhhHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHH-ccChHHHHHHHHHhhccccccHHHHHHhHHH
Confidence 999999999999999999999999887765 46788899999888876 3334445566778888877766543345567
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHH-HHhhccCccchhhhHHHHHHHHHHHHHhchh
Q 001249 504 IVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA-ILVNATDKSNRMLRAKSMECISLVGMAVGKD 582 (1114)
Q Consensus 504 il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~-~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~ 582 (1114)
+|-.+..-+++++.+.++..+.++..++...|-.-.=....++|.++. .+.... .-++..-.+..++-..++..+|..
T Consensus 637 vmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrm-A~drr~ykqlv~ttv~ia~KvG~~ 715 (1172)
T KOG0213|consen 637 VMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRM-ALDRRNYKQLVDTTVEIAAKVGSD 715 (1172)
T ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhh-hccccchhhHHHHHHHHHHHhCch
Confidence 888888999999999999999999999887763211112344554444 443311 111122223466777788888843
Q ss_pred hhhhhHHHHHHHHH-HHhcCCCCCCCchhhHHHHHHHHHHHHhccC-Cccch-hhhhHHHHHhccCCCCccccCCCCccc
Q 001249 583 KFRDDAKQVMEVLM-SLQGSQMETDDPTTSYMLQAWARLCKCLGQD-FLPYM-SVVMPPLLQSAQLKPDVTITSADSDNE 659 (1114)
Q Consensus 583 ~f~~~~~~i~~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~l-~~i~~~ll~~~~~~~~~~~~~~~~~~~ 659 (1114)
+++.-++ .+.+ +.++.|.....+..++...+|.. |..-+ ..++..++..++.+..
T Consensus 716 -------~~v~R~v~~lkd----e~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt----------- 773 (1172)
T KOG0213|consen 716 -------PIVSRVVLDLKD----EPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT----------- 773 (1172)
T ss_pred -------HHHHHHhhhhcc----ccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc-----------
Confidence 2222222 2222 33456777777777777766643 44332 2344555555532210
Q ss_pred ccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHH
Q 001249 660 IEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPE 739 (1114)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~ 739 (1114)
++. .-+..++.+...++....||+++++..++..|+.. +..+|..|+..++.
T Consensus 774 -----~d~----------------------vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnk-sa~vRqqaadlis~ 825 (1172)
T KOG0213|consen 774 -----EDS----------------------VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNK-SAKVRQQAADLISS 825 (1172)
T ss_pred -----chh----------------------hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCC-ChhHHHHHHHHHHH
Confidence 000 12346788888899999999999999999999975 89999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHH
Q 001249 740 LLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL-LDEGQVRSIVDEIKQV 818 (1114)
Q Consensus 740 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~-~~~~~~~~~~~~l~~~ 818 (1114)
+....+.+- . .+++..+--.|.+.+. +..+++...++.++..+....|-. +.+ -+..++..+.++
T Consensus 826 la~Vlktc~---------e---e~~m~~lGvvLyEylg-eeypEvLgsILgAikaI~nvigm~km~p-Pi~dllPrltPI 891 (1172)
T KOG0213|consen 826 LAKVLKTCG---------E---EKLMGHLGVVLYEYLG-EEYPEVLGSILGAIKAIVNVIGMTKMTP-PIKDLLPRLTPI 891 (1172)
T ss_pred HHHHHHhcc---------H---HHHHHHhhHHHHHhcC-cccHHHHHHHHHHHHHHHHhccccccCC-ChhhhcccchHh
Confidence 987665431 1 1233333334556664 457899999999999888887632 332 256677777788
Q ss_pred HHHHHhhHHH-HHH------hhcCCCCChHhh-----hhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhH
Q 001249 819 ITASSSRKRE-RAE------RAKAEDFDAEES-----ELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYL 886 (1114)
Q Consensus 819 l~~~~~~~~~-~~~------~~~~~~~d~~~~-----~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 886 (1114)
|++..+.... |.+ ..+.|=....+. +.++--......++.++.+.+|.+++..|++ .++..+
T Consensus 892 LknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq------dVLatL 965 (1172)
T KOG0213|consen 892 LKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ------DVLATL 965 (1172)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH------HHHHHH
Confidence 7776554332 111 122221122221 1222223455677788888899999888864 233444
Q ss_pred hhhhcCCCCHHHHH---HHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCchHHHH
Q 001249 887 TPMWGKDKTAEERR---IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVG 963 (1114)
Q Consensus 887 ~~~l~~~~~~~~r~---~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~ 963 (1114)
+..++ ..+|+ ..--.++-+.++||+. .++|.+++-.+-++..|.+....++..+.++.++.-..|+.
T Consensus 966 lnnLk----vqeRq~RvcTtvaIaIVaE~c~pF------tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy 1035 (1172)
T KOG0213|consen 966 LNNLK----VQERQNRVCTTVAIAIVAETCGPF------TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY 1035 (1172)
T ss_pred Hhcch----HHHHHhchhhhhhhhhhhhhcCch------hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH
Confidence 43332 23343 3333566667788875 67999999999999999999999999999999998899999
Q ss_pred HHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCCCH-------hhHHHHHHhcCCCCCcHHHHHHHHHHHHH
Q 001249 964 EALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDA-------AQVVPAWLNCLPIKGDLIEAKIVHEQLCS 1036 (1114)
Q Consensus 964 ~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~~~-------~~~~~~~l~~Lp~~~d~~e~~~~~~~l~~ 1036 (1114)
.+.|.|...+.+. +..-|+.|+.++..|...+++.-.. .-++|-++.--| .......+++-.
T Consensus 1036 av~PlleDAlmDr------D~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sP-----hviqa~~e~~eg 1104 (1172)
T KOG0213|consen 1036 AVTPLLEDALMDR------DLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSP-----HVIQAFDEAMEG 1104 (1172)
T ss_pred HhhHHHHHhhccc------cHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCCh-----HHHHHHHHHHHH
Confidence 9999999999865 3667888999999888887664322 233443333333 222222222222
Q ss_pred HHhhcCCcccCcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 001249 1037 MVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQ 1084 (1114)
Q Consensus 1037 l~~~~~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 1084 (1114)
+ ...+| ...+++++.+.|-+. ...++......+..
T Consensus 1105 ~-----r~~Lg-----~~~~~~Y~~QGLFHP---arkVR~~yw~vyn~ 1139 (1172)
T KOG0213|consen 1105 L-----RVALG-----PQAMLKYCLQGLFHP---ARKVRKRYWTVYNS 1139 (1172)
T ss_pred H-----HHHhc-----hHHHHHHHHHhccCc---HHHHHHHHHHHHHh
Confidence 2 22345 246788888877633 23344444444433
No 15
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.5e-19 Score=190.80 Aligned_cols=474 Identities=15% Similarity=0.166 Sum_probs=285.9
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCC---
Q 001249 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRL--- 96 (1114)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l--- 96 (1114)
.+++.+.+.++++.|..+|+.||+.|+++.+ +|. |+..+++++.+ .-+..+|+.|++++||.+.+. |...
T Consensus 2 ~~ellqcf~qTldada~~rt~AE~~Lk~leK-qPg-Fv~all~i~s~de~~lnvklsAaIYfKNkI~rs----Wss~~d~ 75 (970)
T COG5656 2 REELLQCFLQTLDADAGKRTIAEAMLKDLEK-QPG-FVMALLHICSKDEGDLNVKLSAAIYFKNKIIRS----WSSKRDD 75 (970)
T ss_pred hHHHHHHHHHHhccCcchhhHHHHHHHHhhc-CCc-HHHHHHHHHhhccCCchhhHHHHHHHhhhhhhh----hhhcccC
Confidence 4688999999999999999999999999999 786 57999999987 478999999999999999998 8753
Q ss_pred --C----HHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHh
Q 001249 97 --S----LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1114)
Q Consensus 97 --~----~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l 170 (1114)
+ ++.|+.++..++..+.. .+...|...-.++..|.+.++|.+.|+ +.|....++.+++..+.-.|+.++..+
T Consensus 76 ~i~~Dek~e~K~~lienil~v~l~-sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~el 153 (970)
T COG5656 76 GIKADEKSEAKKYLIENILDVFLY-SPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEEL 153 (970)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHH
Confidence 2 34555555555555554 345566666667777788899988999 999999999999999999999999999
Q ss_pred hhhhh-------hhhhhhHHHHHHHHHHh---hcC-C--CChHHHHHHHHHHHHHHHh-cCCc-chHhHHHhhHHHHHHH
Q 001249 171 SQYIG-------DTLTPHLKHLHAVFLNC---LTN-S--NNPDVKIAALNAVINFIQC-LTSS-ADRDRFQDLLPLMMRT 235 (1114)
Q Consensus 171 ~~~~~-------~~~~~~~~~l~~~l~~~---l~~-~--~~~~vr~~a~~~l~~l~~~-~~~~-~~~~~~~~l~p~ll~~ 235 (1114)
++... ..+.+.+..+.|.+.+. +.+ + ++.++-...++.+...+-+ ++.. ...+.|..++...+..
T Consensus 154 fkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i 233 (970)
T COG5656 154 FKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRI 233 (970)
T ss_pred HHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHH
Confidence 97532 12334455555655443 222 1 1233333444444333322 2210 1234455566656665
Q ss_pred HHHHHh----CCCHHHH---------HHHHHHHHHHHccchHH--------H----HHHHHHHHHHHHHHhc---cCC--
Q 001249 236 LTESLN----NGNEATA---------QEALELLIELAGTEPRF--------L----RRQLVDVVGSMLQIAE---AES-- 285 (1114)
Q Consensus 236 l~~~~~----~~~~~~~---------~~~~~~l~~l~~~~~~~--------~----~~~~~~l~~~ll~~~~---~~~-- 285 (1114)
+...+. +-++++| +.|+..+..+...+.+. + ...++.++...++... +..
T Consensus 234 ~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLW 313 (970)
T COG5656 234 LQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLW 313 (970)
T ss_pred HcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCee
Confidence 543221 1244443 34455555555444221 1 1233444444444332 111
Q ss_pred cchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH-HHHHhhcCCCC-CcccccCCCC------CccccCCCchhh
Q 001249 286 LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA-ILMSMLLDIED-DPLWHSAETE------DEDAGESSNYSV 357 (1114)
Q Consensus 286 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~l~~~~~-~~~~~~~~~~------~ed~~~~~~~~~ 357 (1114)
.++. -...+.++...|.. ....++.+.|+++-++. .++++++-.++ .+.|+.++++ |--++..++.-+
T Consensus 314 lsd~-~LYfi~~Fve~cv~---~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdla 389 (970)
T COG5656 314 LSDI-ELYFIDFFVELCVD---ADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLA 389 (970)
T ss_pred cchH-HHHHHHHHHHHHhh---hHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHH
Confidence 1222 22333333333331 12234455566655543 34555553332 2335443322 001122333334
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhC-------C-CChhHHHHHHHHHHHHHh--hcHHHHHHhHHH-HHHHHHhc
Q 001249 358 GQECLDRLAIALGGNTIVPVASEQLPAYLA-------A-PEWQKHHAALIALAQIAE--GCAKVMVKNLEQ-VLSMVLNS 426 (1114)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-------~-~~~~~r~aal~~l~~l~~--~~~~~~~~~l~~-i~~~l~~~ 426 (1114)
+..++-..+...+ +..+..+++++...+. + .+.+..++|+..++.+.. .-.......+.. +++.+.+.
T Consensus 390 al~fl~~~~sKrk-e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~ 468 (970)
T COG5656 390 ALFFLIISKSKRK-EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPA 468 (970)
T ss_pred HHHHHHHHhcccc-hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHh
Confidence 5555555555554 6667777787777662 1 357888999999998877 222233344443 56777788
Q ss_pred CCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc-ccccCchHHHH
Q 001249 427 FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-EILTPYLDGIV 505 (1114)
Q Consensus 427 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~-~~l~~~l~~il 505 (1114)
++++.-..|..||..++.+.+.+++. ....+++....+++++ .+-.|+..|.-|+..|+.+... ..+..|.+..|
T Consensus 469 f~s~ygfL~Srace~is~~eeDfkd~---~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tm 544 (970)
T COG5656 469 FRSNYGFLKSRACEFISTIEEDFKDN---GILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETM 544 (970)
T ss_pred hcCcccchHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHH
Confidence 88888888888888888887666542 3456677777777777 6677777777777777654321 22344455555
Q ss_pred HHHHHH
Q 001249 506 SKLLVL 511 (1114)
Q Consensus 506 ~~L~~~ 511 (1114)
+.|+++
T Consensus 545 ekLLsL 550 (970)
T COG5656 545 EKLLSL 550 (970)
T ss_pred HHHHHh
Confidence 555443
No 16
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.93 E-value=3.1e-19 Score=186.14 Aligned_cols=663 Identities=15% Similarity=0.200 Sum_probs=394.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHcCCC---hHHHHHHHHHHHH-hhhcCchH---H---------------HHHHHHHHcc
Q 001249 10 QSQLAVILGPDSAPFETLISHLMSTS---NEQRSEAELLFNL-CKQQDPDS---L---------------TLKLAHLLQR 67 (1114)
Q Consensus 10 ~~~~~~~~~~~~~~l~~ll~~~~s~d---~~~r~~Ae~~L~~-~~~~~p~~---~---------------~~~L~~il~~ 67 (1114)
+.|+-.+..-|.+++..++...+..+ ...|-.|--.|+. +...+|+- | -...+..| .
T Consensus 26 E~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL-~ 104 (858)
T COG5215 26 EAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRAL-K 104 (858)
T ss_pred HHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHh-c
Confidence 45555666677788877777655433 3456666555653 33323321 1 01111222 2
Q ss_pred CCCHHHHHHHHHHHHHhcccC-CCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC---Cchh
Q 001249 68 SPHPEARAMAAVLLRKLLTRD-DSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPE 143 (1114)
Q Consensus 68 ~~~~~~R~~A~~~Lk~~l~~~-~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~---~w~~ 143 (1114)
+..+.+-++|+.++..+.... ....|+ .+...+......|....++.....+++.+....-|.. ....
T Consensus 105 s~epr~~~~Aaql~aaIA~~Elp~~~wp--------~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~ 176 (858)
T COG5215 105 SPEPRFCTMAAQLLAAIARMELPNSLWP--------GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNV 176 (858)
T ss_pred CCccHHHHHHHHHHHHHHHhhCccccch--------HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhH
Confidence 556777788888887765543 123453 2333333344455555566666667776665444411 1122
Q ss_pred hHHHHHHhhc--CCChhhHHHHHHHHHHhhhhhhhhhh--hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCc
Q 001249 144 LLPFMFQCVS--SDSVKLQESAFLIFAQLSQYIGDTLT--PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1114)
Q Consensus 144 ll~~l~~~~~--~~~~~~r~~al~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 219 (1114)
++-.+..... .++..+|..|+.+|..-+..+...+. ...+.+++.....-+.+ +.++..+|+.|+..++....
T Consensus 177 il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~-d~e~q~aafgCl~kim~LyY-- 253 (858)
T COG5215 177 ILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGN-DEELQHAAFGCLNKIMMLYY-- 253 (858)
T ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCC-cHHHHHHHHHHHHHHHHHHH--
Confidence 2222333322 24668899999998886665554432 24566777777777776 89999999999999987531
Q ss_pred chHhHHHhhHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHccch--HH---------------HHHHHHHHHHHHHHHh
Q 001249 220 ADRDRFQDLLPLMM-RTLTESLNNGNEATAQEALELLIELAGTEP--RF---------------LRRQLVDVVGSMLQIA 281 (1114)
Q Consensus 220 ~~~~~~~~l~p~ll-~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~---------------~~~~~~~l~~~ll~~~ 281 (1114)
+..+..+...+ ....+...++++++...+++.|..+++... .. -+.-+.+++|-+++++
T Consensus 254 ---~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL 330 (858)
T COG5215 254 ---KFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLL 330 (858)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHH
Confidence 11122222211 222344568899999999999988876431 11 1122345667666666
Q ss_pred ccCC-----cchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchh
Q 001249 282 EAES-----LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYS 356 (1114)
Q Consensus 282 ~~~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~ 356 (1114)
.+.+ ++-.+...|-.|+--+++... ...+++++...-+.+ ..+.|. .+.
T Consensus 331 ~~q~ed~~~DdWn~smaA~sCLqlfaq~~g---------d~i~~pVl~FvEqni----~~~~w~-------------nre 384 (858)
T COG5215 331 EKQGEDYYGDDWNPSMAASSCLQLFAQLKG---------DKIMRPVLGFVEQNI----RSESWA-------------NRE 384 (858)
T ss_pred HhcCCCccccccchhhhHHHHHHHHHHHhh---------hHhHHHHHHHHHHhc----cCchhh-------------hHH
Confidence 4421 222355666666665555311 012222222222211 122233 344
Q ss_pred hHHHHHHHHHHHcCC---CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHH--hHHHHHHHHHhcC----
Q 001249 357 VGQECLDRLAIALGG---NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVK--NLEQVLSMVLNSF---- 427 (1114)
Q Consensus 357 ~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~--~l~~i~~~l~~~l---- 427 (1114)
+|..+++.+...-.. -.++|..+|-+....+++.-.++..+.+++|.++......+.+ |+...+...+.++
T Consensus 385 aavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p 464 (858)
T COG5215 385 AAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCP 464 (858)
T ss_pred HHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccc
Confidence 555555544321100 1356667777777777777667777777888887654433221 2222222222222
Q ss_pred ---------------------------------------------CCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhH
Q 001249 428 ---------------------------------------------RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 462 (1114)
Q Consensus 428 ---------------------------------------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il 462 (1114)
.+.+...|.+++.+||.+...+++.. .+....+.
T Consensus 465 ~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V-~~~~a~~~ 543 (858)
T COG5215 465 FRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAV-SDILAGFY 543 (858)
T ss_pred hHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhH-HHHHHHHH
Confidence 23344567777777777777665544 23333333
Q ss_pred HHHHhhccC--------------CCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC-ChhHHHHHHHHH
Q 001249 463 PALAGAMDD--------------FQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-KQMVQEGALTAL 527 (1114)
Q Consensus 463 ~~l~~~l~~--------------~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~-~~~v~~~al~~l 527 (1114)
..+.+.+.. ....+++..-|..|..++...+++ +++.-+.+++-+++.+++. ...+-...+.+|
T Consensus 544 ~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~-ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aI 622 (858)
T COG5215 544 DYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRD-IEDVEDQLMELFIRILESTKPTTAFGDVYTAI 622 (858)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC-cccHHHHHHHHHHHHHhccCCchhhhHHHHHH
Confidence 333222211 013456777888888888887754 6788888999999999987 456677899999
Q ss_pred HHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCC
Q 001249 528 ASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDD 607 (1114)
Q Consensus 528 ~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~ 607 (1114)
+.+....++.|..|.+.++|+|...++. . ++.+...|+..+|.++.++| ..|.+|+..++..+.+...+. ..++
T Consensus 623 sal~~sl~e~Fe~y~~~fiPyl~~aln~-~---d~~v~~~avglvgdlantl~-~df~~y~d~~ms~LvQ~lss~-~~~R 696 (858)
T COG5215 623 SALSTSLEERFEQYASKFIPYLTRALNC-T---DRFVLNSAVGLVGDLANTLG-TDFNIYADVLMSSLVQCLSSE-ATHR 696 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhcc-h---hHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCh-hhcc
Confidence 9999999999999999999999999832 2 35577778899999999999 889999999999999855532 2456
Q ss_pred chhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHH
Q 001249 608 PTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEE 687 (1114)
Q Consensus 608 ~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 687 (1114)
.+++.++.+|+.++..+|.+|.+||..++-.+.+.-..+|.- +.+.. .|....++...
T Consensus 697 ~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~----------------~~~~~---~dy~~~~~~~v--- 754 (858)
T COG5215 697 DLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHS----------------DEVYV---DDYRKNAVQLV--- 754 (858)
T ss_pred ccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCC----------------CceeH---HHHHHHHHHHH---
Confidence 799999999999999999999999999998777766555431 00100 00011111111
Q ss_pred HHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccC-CHHHHHHHHHhHHHHHHHH
Q 001249 688 KATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYF-HEEVRKAAVSAMPELLRSA 744 (1114)
Q Consensus 688 k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~-~~~vr~~a~~al~~l~~~~ 744 (1114)
..|.-.++.-.++-...+.||+..++..+--.-.|+. ++...++|...++.|...+
T Consensus 755 -~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mf 811 (858)
T COG5215 755 -NCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMF 811 (858)
T ss_pred -HHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhC
Confidence 1122222222233345688999888877764444432 3445567777777776654
No 17
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.89 E-value=9e-18 Score=180.29 Aligned_cols=684 Identities=16% Similarity=0.218 Sum_probs=418.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhhh-cCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCC--CCccc---
Q 001249 22 APFETLISHLMSTSNEQRSEAELLFNLCKQ-QDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD--SFLWP--- 94 (1114)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~-~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~--~~~w~--- 94 (1114)
-.+..+|..+.++.+.-|+.|-.+|..=.. .-++-+...++-++-+ +-+.+-|++-.-++-+++.+-+ ..-|.
T Consensus 363 r~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkI 442 (1172)
T KOG0213|consen 363 RKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKI 442 (1172)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeee
Confidence 355666777778888889999888764222 1122233444444444 5566778877766666654421 00000
Q ss_pred -------CCCHHHHHH-----HHHHHHH---------HHh---hchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHH
Q 001249 95 -------RLSLHTQSS-----LKSMLLQ---------SIQ---LESAKSISKKLCDTVSELASNILPENGWPELLPFMFQ 150 (1114)
Q Consensus 95 -------~l~~~~~~~-----i~~~ll~---------~l~---~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~ 150 (1114)
.++++.... |...|-. .+. +..++-||+..+.+++.+|++. ..|.++|+|..
T Consensus 443 LvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal----gip~llpfLka 518 (1172)
T KOG0213|consen 443 LVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL----GIPALLPFLKA 518 (1172)
T ss_pred EEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh----CcHHHHHHHHH
Confidence 122322211 1121211 111 1146679999999999999974 46999999999
Q ss_pred hhcCC-ChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhH
Q 001249 151 CVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL 229 (1114)
Q Consensus 151 ~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~ 229 (1114)
...|. ++..|+.++.+...|+...+-...+|+..++.++..++.|. +..||..+..++..+++.. .+-..+.|...+
T Consensus 519 vc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De-~qkVR~itAlalsalaeaa-~Pygie~fDsVl 596 (1172)
T KOG0213|consen 519 VCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDE-QQKVRTITALALSALAEAA-TPYGIEQFDSVL 596 (1172)
T ss_pred HhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhccc-chhhhhHHHHHHHHHHHhc-CCcchHHHHHHH
Confidence 99886 89999999999999999999888999999999999999997 8999999999999998864 233445555544
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHH-HHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhcc
Q 001249 230 PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA 308 (1114)
Q Consensus 230 p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 308 (1114)
..+.+.+.+ ........-+.+++.++-........|. ..++-.++.-. ...|++.+...+..+..+|....-.
T Consensus 597 kpLwkgir~----hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf--~sPDeemkkivLKVv~qcc~t~Gv~ 670 (1172)
T KOG0213|consen 597 KPLWKGIRQ----HRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREF--GSPDEEMKKIVLKVVKQCCATDGVE 670 (1172)
T ss_pred HHHHHHHHH----ccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhh--CCChHHHHHHHHHHHHHHhcccCCC
Confidence 444443332 2222222333444443322222222222 24444444433 3456788888888888888753322
Q ss_pred chhhhcchhhHHHHHHHHHHhhc-----------------------CCCCCcccccCCCCCccccCCC-chhhHHHHHHH
Q 001249 309 PGMMRKLPQFINRLFAILMSMLL-----------------------DIEDDPLWHSAETEDEDAGESS-NYSVGQECLDR 364 (1114)
Q Consensus 309 ~~~~~~~~~~~~~l~~~l~~~l~-----------------------~~~~~~~~~~~~~~~ed~~~~~-~~~~a~~~l~~ 364 (1114)
|...+ ..++|..+...- ....++....-- ++- .|+.. -++....++++
T Consensus 671 ~~y~r------~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v-~~l-kde~e~yrkm~~etv~r 742 (1172)
T KOG0213|consen 671 PAYIR------FDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVV-LDL-KDEPEQYRKMVAETVSR 742 (1172)
T ss_pred HHHHh------hhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHh-hhh-ccccHHHHHHHHHHHHH
Confidence 32221 223333332211 000000000000 000 01122 23456677777
Q ss_pred HHHHcCCCcch----HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHH
Q 001249 365 LAIALGGNTIV----PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAIN 440 (1114)
Q Consensus 365 l~~~~~~~~~~----~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~ 440 (1114)
+...+|...+- ..++.-+...++.++-..- ..+..++.++.....-+++|+++|+..++..|+++.+.||..|+.
T Consensus 743 i~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaad 821 (1172)
T KOG0213|consen 743 IVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAAD 821 (1172)
T ss_pred HHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHH
Confidence 77777643332 2333333333343322222 456778888887777778999999999999999999999999999
Q ss_pred HHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHH
Q 001249 441 AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQ 520 (1114)
Q Consensus 441 ~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~ 520 (1114)
.++.++..+...-..+.+..+=-.|.+.|.. ..++|-.....|+..++...+...+.|-+.+++|.|...|.+....|+
T Consensus 822 lis~la~Vlktc~ee~~m~~lGvvLyEylge-eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVq 900 (1172)
T KOG0213|consen 822 LISSLAKVLKTCGEEKLMGHLGVVLYEYLGE-EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQ 900 (1172)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHH
Confidence 9999987664321122344444556788887 789999999999998888777666778899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhh--hhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHH-
Q 001249 521 EGALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS- 597 (1114)
Q Consensus 521 ~~al~~l~~l~~~~~~~~~--~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~- 597 (1114)
+..+..+|.++...++... .+.-... -|++.|.. -...+|..|.+++|.|++++|++ +++..+++
T Consensus 901 en~IdLvg~IadrgpE~v~aREWMRIcf-eLlelLka----hkK~iRRaa~nTfG~IakaIGPq-------dVLatLlnn 968 (1172)
T KOG0213|consen 901 ENCIDLVGTIADRGPEYVSAREWMRICF-ELLELLKA----HKKEIRRAAVNTFGYIAKAIGPQ-------DVLATLLNN 968 (1172)
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHH----HHHHHHHHHHhhhhHHHHhcCHH-------HHHHHHHhc
Confidence 9999999999988765322 2333222 23333332 13468899999999999999965 34444443
Q ss_pred HhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCce
Q 001249 598 LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKR 677 (1114)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1114)
+.. .++-.|....-+++.+++.+| || .++|.+++--.. |+
T Consensus 969 Lkv----qeRq~RvcTtvaIaIVaE~c~----pF--tVLPalmneYrt-Pe----------------------------- 1008 (1172)
T KOG0213|consen 969 LKV----QERQNRVCTTVAIAIVAETCG----PF--TVLPALMNEYRT-PE----------------------------- 1008 (1172)
T ss_pred chH----HHHHhchhhhhhhhhhhhhcC----ch--hhhHHHHhhccC-ch-----------------------------
Confidence 111 111123222233444444444 33 345554433211 11
Q ss_pred eeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCC
Q 001249 678 IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRN 757 (1114)
Q Consensus 678 ~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~ 757 (1114)
.+|.++. +.+++.+.+..++.-..|+..+.+.+...+.|. +..-|+.|+.++.++.-.+. ....
T Consensus 1009 ~nVQnGV-------Lkalsf~FeyigemskdYiyav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg~~--------g~g~ 1072 (1172)
T KOG0213|consen 1009 ANVQNGV-------LKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR-DLVHRQTAMNVIKHLALGVP--------GTGC 1072 (1172)
T ss_pred hHHHHhH-------HHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcCCC--------CcCc
Confidence 1233444 447777777777777788888888888888764 56668888888877754221 0114
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhC
Q 001249 758 ESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISG 800 (1114)
Q Consensus 758 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 800 (1114)
.+.+.++++.++|.+++ +.+.++.+..+++..+-..+|
T Consensus 1073 eda~iHLLN~iWpNIle-----~sPhviqa~~e~~eg~r~~Lg 1110 (1172)
T KOG0213|consen 1073 EDALIHLLNLIWPNILE-----TSPHVIQAFDEAMEGLRVALG 1110 (1172)
T ss_pred HHHHHHHHHHhhhhhcC-----CChHHHHHHHHHHHHHHHHhc
Confidence 55677888888886654 345555444444443333334
No 18
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.89 E-value=2.1e-18 Score=181.48 Aligned_cols=683 Identities=15% Similarity=0.148 Sum_probs=426.4
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Q 001249 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSM 277 (1114)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 277 (1114)
....|..+++.|..=...+. ....|..++|.++..-. +...|...+..+..+.......-.||+..|+-..
T Consensus 181 ~~~mR~~~lRiLtdkav~fg---~~~vfnkvLp~lm~r~L------eDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv 251 (975)
T COG5181 181 GKRMRMEGLRILTDKAVNFG---AAAVFNKVLPMLMSREL------EDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVV 251 (975)
T ss_pred CchhhHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhhh------hhhhhHhHHHHHHHHHHhcccccccceeeEEEEe
Confidence 67889999988876555442 22345666666655322 3345666666666666554455555555443211
Q ss_pred HHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhh
Q 001249 278 LQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV 357 (1114)
Q Consensus 278 l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~ 357 (1114)
-..+- +.+...|...-+.+..++.. .. +... +..| ..| +. . .+.-.++.
T Consensus 252 ~plli--ded~~~r~~g~eii~nL~~~---~G-----l~~~--------vs~m---rpD--i~-----~---~deYVRnv 300 (975)
T COG5181 252 GPLLI--DEDLKRRCMGREIILNLVYR---CG-----LGFS--------VSSM---RPD--IT-----S---KDEYVRNV 300 (975)
T ss_pred ecccc--CccHHHhcccHHHHHHHHHH---hc-----ccee--------eeec---cCC--cc-----c---ccHHHHHH
Confidence 11111 22334455555666666652 11 0000 0000 000 00 0 01123456
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHH
Q 001249 358 GQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRW 436 (1114)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~ 436 (1114)
.+.+...++.++| .+.++|++.....|. +|+.|+.++.+..++++-.+-...+|+..++..+-.++.|.+..||-
T Consensus 301 t~ra~~vva~alg----v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi 376 (975)
T COG5181 301 TGRAVGVVADALG----VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRI 376 (975)
T ss_pred HHHHHHHHHHhhC----cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeee
Confidence 7778888888887 467788888888776 89999999999999998766667789999999999999999999999
Q ss_pred HHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCC
Q 001249 437 AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 516 (1114)
Q Consensus 437 ~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~ 516 (1114)
.++.+++.+++..+|.- ...++.++..|.+.... .-...-.+-..|.+.++.-+.++...-|-...++.++..+++++
T Consensus 377 ~tA~alS~lae~~~Pyg-ie~fd~vl~pLw~g~~~-hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spd 454 (975)
T COG5181 377 DTANALSYLAELVGPYG-IEQFDEVLCPLWEGASQ-HRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPD 454 (975)
T ss_pred hhHhHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHh-cCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCch
Confidence 99999999999888765 46678888888887776 22333344455666666666777666677789999999999998
Q ss_pred hhHHHHHHHHHHHHHHhhhh-hhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHH
Q 001249 517 QMVQEGALTALASVADSSQE-HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVL 595 (1114)
Q Consensus 517 ~~v~~~al~~l~~l~~~~~~-~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l 595 (1114)
.+.+...+... ..|...+. .-..|.+++.|.+++.+.......++..-.+...+-..+++..|.. .+..-+
T Consensus 455 eemkk~~l~v~-~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~-------~v~~ki 526 (975)
T COG5181 455 EEMKKDLLVVE-RICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDP-------RVSRKI 526 (975)
T ss_pred hhcchhHHHHH-HHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCCh-------HHHHHH
Confidence 88776655544 44444443 3334678888888776544211111222222334445566656621 233333
Q ss_pred HHHhcCCCCCCCchhhHHHHHHHHHHHHhcc-CCccchh-hhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhc
Q 001249 596 MSLQGSQMETDDPTTSYMLQAWARLCKCLGQ-DFLPYMS-VVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITL 673 (1114)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~-~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1114)
+.... +..+|.|.....+..++...+|. +|..-+. .++..++..++.+.. .+.+
T Consensus 527 l~~~~---De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~----------------t~~~----- 582 (975)
T COG5181 527 LEYYS---DEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT----------------TVGL----- 582 (975)
T ss_pred Hhhcc---CCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc----------------cccE-----
Confidence 33222 34466777777777777776664 3444333 344555555532210 0100
Q ss_pred CCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCC
Q 001249 674 GDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLA 753 (1114)
Q Consensus 674 ~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~ 753 (1114)
| +.+.+.+...++-...||+..++..+++.+.+. .+++|..|+..++.|....+.+-+
T Consensus 583 ------i-----------l~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e---- 640 (975)
T COG5181 583 ------I-----------LPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGE---- 640 (975)
T ss_pred ------E-----------EecccceeeehhhccCcchHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcch----
Confidence 0 012233333344456799999999999999875 789999999999998876654311
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHhhHHHHHH-
Q 001249 754 PGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL-LDEGQVRSIVDEIKQVITASSSRKRERAE- 831 (1114)
Q Consensus 754 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~- 831 (1114)
...+..+-..|.+.+. +..+++...++.++..+....+-. +.| -+..++..+.++|.+..++.....-
T Consensus 641 --------~~~l~klg~iLyE~lg-e~ypEvLgsil~Ai~~I~sv~~~~~mqp-Pi~~ilP~ltPILrnkh~Kv~~nti~ 710 (975)
T COG5181 641 --------TKELAKLGNILYENLG-EDYPEVLGSILKAICSIYSVHRFRSMQP-PISGILPSLTPILRNKHQKVVANTIA 710 (975)
T ss_pred --------HHHHHHHhHHHHHhcC-cccHHHHHHHHHHHHHHhhhhcccccCC-chhhccccccHhhhhhhHHHhhhHHH
Confidence 1122222233455554 457888888888888777665521 322 3556677777777766544322110
Q ss_pred ------hhcCCCCChHhh-----hhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHH
Q 001249 832 ------RAKAEDFDAEES-----ELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERR 900 (1114)
Q Consensus 832 ------~~~~~~~d~~~~-----~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~ 900 (1114)
..+.+-....+. +.++--.....+++.++.+.+|.+.+..|++ .++..++..++ ...-..|.
T Consensus 711 lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq------dvL~~LlnnLk-vqeRq~Rv 783 (975)
T COG5181 711 LVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ------DVLDILLNNLK-VQERQQRV 783 (975)
T ss_pred HHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH------HHHHHHHhcch-HHHHHhhh
Confidence 011111111111 1222223455677788888889888888763 23444444332 11222333
Q ss_pred HHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCC
Q 001249 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQ 980 (1114)
Q Consensus 901 ~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~ 980 (1114)
..--.++-+.++||+. .++|.++.-...++..|.+....+++.+.++.+..-..|+..+.|.|-..+.+.
T Consensus 784 ctsvaI~iVae~cgpf------sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr---- 853 (975)
T COG5181 784 CTSVAISIVAEYCGPF------SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR---- 853 (975)
T ss_pred hhhhhhhhhHhhcCch------hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc----
Confidence 3344567777888886 678999999999999999999999999999999988999999999999999876
Q ss_pred hhhhhhHHHHHHHHHHHHhhcCCCCCHhh
Q 001249 981 PENLMAYDNAVSALGKICQFHRDSIDAAQ 1009 (1114)
Q Consensus 981 ~~~~~~~~na~~al~~l~~~~~~~~~~~~ 1009 (1114)
+..-|..|...+..+..++++.-+.+.
T Consensus 854 --D~vhRqta~nvI~Hl~Lnc~gtg~eda 880 (975)
T COG5181 854 --DPVHRQTAMNVIRHLVLNCPGTGDEDA 880 (975)
T ss_pred --chHHHHHHHHHHHHHhcCCCCcccHHH
Confidence 356677788888888888877643333
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.87 E-value=1.2e-16 Score=198.36 Aligned_cols=786 Identities=14% Similarity=0.127 Sum_probs=472.5
Q ss_pred hHHHHHHHHHHcCC--ChHHHHHHHHHHHHhhhcCchH---------HHHHHHHHHccCCCHHHHHHHHHHHHHhcccCC
Q 001249 21 SAPFETLISHLMST--SNEQRSEAELLFNLCKQQDPDS---------LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD 89 (1114)
Q Consensus 21 ~~~l~~ll~~~~s~--d~~~r~~Ae~~L~~~~~~~p~~---------~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~ 89 (1114)
...+..+++.+.++ +.+.|++|...|..|.+.+++. +++.|+.+|.+ .++.+|..|+-.|.++-..
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s-g~~~vk~nAaaaL~nLS~~-- 88 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS-GTLGAKVNAAAVLGVLCKE-- 88 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC--
Confidence 45788889999866 6788999999998887765432 35778888864 5688999988777776432
Q ss_pred CCcccCCCHHHH-----HHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCc------hhhHHHHHHhhcCCC--
Q 001249 90 SFLWPRLSLHTQ-----SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW------PELLPFMFQCVSSDS-- 156 (1114)
Q Consensus 90 ~~~w~~l~~~~~-----~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w------~~ll~~l~~~~~~~~-- 156 (1114)
++.+ ......|++.|.+ .+...|..++.++..++........| +..+|.|..++++++
T Consensus 89 --------e~nk~~Iv~~GaIppLV~LL~s-Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~ 159 (2102)
T PLN03200 89 --------EDLRVKVLLGGCIPPLLSLLKS-GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQ 159 (2102)
T ss_pred --------HHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchh
Confidence 2222 2333467777875 58889999999999998742111222 567899999988763
Q ss_pred -hhhHHHHHHHHHHhhhhhhhhhhhhH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHH--HhhHHHH
Q 001249 157 -VKLQESAFLIFAQLSQYIGDTLTPHL-KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLM 232 (1114)
Q Consensus 157 -~~~r~~al~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~p~l 232 (1114)
..+++.+..+|..++.+-.......+ ...+|.+...++++ ++.++..|+.++..++...++ ....+ ...+|.+
T Consensus 160 d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~ee--~~~aVIeaGaVP~L 236 (2102)
T PLN03200 160 DKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-NSDAQANAASLLARLMMAFES--SISKVLDAGAVKQL 236 (2102)
T ss_pred hHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCChH--HHHHHHHCCCHHHH
Confidence 33556667888888865443212111 23778888888886 899999999988877755321 11111 2345555
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCC-------cchhHHHHHHHHHHHHHHh
Q 001249 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAES-------LEEGTRHLAIEFVITLAEA 304 (1114)
Q Consensus 233 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~-------~~~~vr~~a~~~l~~l~~~ 304 (1114)
++.+.. +.++.++..|..+|..++...++.-..... ..++.+++.+..++ .....+..|...+..+|..
T Consensus 237 V~LL~s---g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 237 LKLLGQ---GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHcc---CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 554431 345688999999999999754433222111 33455555443221 2345688999999998872
Q ss_pred hhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC-Cc---ch--HHH
Q 001249 305 RERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG-NT---IV--PVA 378 (1114)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~-~~---~~--~~l 378 (1114)
. ..+++.|-+.+....+. .....+...+..+...+.. .. .+ ..+
T Consensus 314 ----------~----~~ll~~L~~ll~s~rd~----------------~~~ada~gALayll~l~d~~~~~~~~i~~~~v 363 (2102)
T PLN03200 314 ----------M----SALILYLGELSESPRSP----------------APIADTLGALAYALMVFDSSAESTRAFDPTVI 363 (2102)
T ss_pred ----------c----hhhHHHHHHhhcccchH----------------HHHHHHHhhHHHHHHhcCCchhhhhhcccccc
Confidence 1 23344443332111000 0000111222222221211 00 01 123
Q ss_pred HHHHHHhhCCCChhH-HHHHHHHHHHHHhhcH--HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHh
Q 001249 379 SEQLPAYLAAPEWQK-HHAALIALAQIAEGCA--KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1114)
Q Consensus 379 ~~~l~~~l~~~~~~~-r~aal~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1114)
.+.+.+++.++++.. .+.+.-+|..+..... ..+. -...++.++..+...+..+|..++++|..++..-......
T Consensus 364 ~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~--~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~a 441 (2102)
T PLN03200 364 EQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLN--HAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEA 441 (2102)
T ss_pred HHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHH--hccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 345556666665543 5556666655433211 1111 1356778888999899999999999999998664333322
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
-.-...+|.|++.|.+ ++..+|..|+++++++..........-.-...+|.|.+++.+++..+|+.|.++++.++.. .
T Consensus 442 Ii~~ggIp~LV~LL~s-~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~ 519 (2102)
T PLN03200 442 LGGREGVQLLISLLGL-SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-S 519 (2102)
T ss_pred HHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-c
Confidence 2344578999999998 7899999999999999764332110001124578899999999999999999999999864 3
Q ss_pred hhhhhhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHH
Q 001249 536 EHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYM 613 (1114)
Q Consensus 536 ~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 613 (1114)
++....+ ...+|.|.+++.+. ....+..|..++..+...-..+.. ..++ .+... ++...+..+
T Consensus 520 ~qir~iV~~aGAIppLV~LL~sg----d~~~q~~Aa~AL~nLi~~~d~~~I----~~Lv----~LLls---dd~~~~~~a 584 (2102)
T PLN03200 520 EDIRACVESAGAVPALLWLLKNG----GPKGQEIAAKTLTKLVRTADAATI----SQLT----ALLLG---DLPESKVHV 584 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHhccchhHH----HHHH----HHhcC---CChhHHHHH
Confidence 3333333 25788888888653 234566777788777653322222 2233 32221 223466777
Q ss_pred HHHHHHHHHHhccC-Ccc-c--hhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHH
Q 001249 614 LQAWARLCKCLGQD-FLP-Y--MSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKA 689 (1114)
Q Consensus 614 ~~~~~~l~~~~~~~-~~~-~--l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~ 689 (1114)
+.+++++....... +.. - -...++.+.+.+... .-..|+
T Consensus 585 L~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-------------------------------------s~~ikk 627 (2102)
T PLN03200 585 LDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-------------------------------------KEETQE 627 (2102)
T ss_pred HHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-------------------------------------CHHHHH
Confidence 77787775543221 110 0 123455566555321 123577
Q ss_pred HHHHHHHHHHHHhhhhcccc-HHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHH-HH
Q 001249 690 TACNMLCCYADELKEGFFPW-IDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLS-DF 767 (1114)
Q Consensus 690 ~A~~~l~~~~~~~~~~~~p~-~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 767 (1114)
.|+.+|..++..-++..... ....++.++.++... +.++++.++.+|+++.... .......++ ..
T Consensus 628 ~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~-~~~v~keAA~AL~nL~~~~------------~~~q~~~~v~~G 694 (2102)
T PLN03200 628 KAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN-TEAVATQSARALAALSRSI------------KENRKVSYAAED 694 (2102)
T ss_pred HHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-ChHHHHHHHHHHHHHHhCC------------CHHHHHHHHHcC
Confidence 88889988886543322111 234566667777654 7889999999999988632 111222222 33
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhh
Q 001249 768 IIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIK 847 (1114)
Q Consensus 768 i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 847 (1114)
.+|+|++.+.. .+.+++..++.++..++.. + +.
T Consensus 695 aV~pL~~LL~~-~d~~v~e~Al~ALanLl~~-~-----e~---------------------------------------- 727 (2102)
T PLN03200 695 AIKPLIKLAKS-SSIEVAEQAVCALANLLSD-P-----EV---------------------------------------- 727 (2102)
T ss_pred CHHHHHHHHhC-CChHHHHHHHHHHHHHHcC-c-----hH----------------------------------------
Confidence 66777777754 3455555555554443321 0 00
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhh-h-hhh--Hh
Q 001249 848 EENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAA-L-KYY--ET 923 (1114)
Q Consensus 848 e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~-~-~~~--~~ 923 (1114)
.. .+.. ...++.+..+++ +.++..|..|..++..+++..+..- . .|. -.
T Consensus 728 ------------~~----ei~~----------~~~I~~Lv~lLr-~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g 780 (2102)
T PLN03200 728 ------------AA----EALA----------EDIILPLTRVLR-EGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRG 780 (2102)
T ss_pred ------------HH----HHHh----------cCcHHHHHHHHH-hCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhC
Confidence 00 0000 012233344443 4467789999999999988766332 2 232 34
Q ss_pred HHHHHHHhccCCChhHHhh--hhHHHHHHHhhcC-CCc--hHHH-----HHHHHHHHHhhcCCCCCChhhhhhHHHHHHH
Q 001249 924 YLPFLLEACNDENQDVRQA--AVYGLGVCAEFGG-SVV--KPLV-----GEALSRLNVVIRHPNALQPENLMAYDNAVSA 993 (1114)
Q Consensus 924 i~~~ll~~l~~~~~~vr~~--a~~~lg~l~~~~~-~~~--~~~~-----~~~l~~L~~~l~~~~~~~~~~~~~~~na~~a 993 (1114)
.+.+++..++..|.+.... |..+++.+++... ..+ .|++ +.-+..|.+.+... ++.+.+-|+..
T Consensus 781 ~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~------~p~~~~kai~i 854 (2102)
T PLN03200 781 TVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEG------HPLVQDKAIEI 854 (2102)
T ss_pred cHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcC------ChHHHHHHHHH
Confidence 5677888888877766666 8999999998533 222 1221 34466676666443 46788888888
Q ss_pred HHHHHhhcCC
Q 001249 994 LGKICQFHRD 1003 (1114)
Q Consensus 994 l~~l~~~~~~ 1003 (1114)
+.|+|..+|.
T Consensus 855 l~~~~~~~~~ 864 (2102)
T PLN03200 855 LSRLCRDQPV 864 (2102)
T ss_pred HHHHhccChh
Confidence 8888877664
No 20
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.5e-14 Score=158.95 Aligned_cols=853 Identities=14% Similarity=0.167 Sum_probs=431.0
Q ss_pred hhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC--ChhhHHHHHHHHHHhhhhhhhh---------hhh-hHH
Q 001249 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQYIGDT---------LTP-HLK 183 (1114)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~--~~~~r~~al~~l~~l~~~~~~~---------~~~-~~~ 183 (1114)
+++..|+.+-.-+..+ ..-|.+++.+.+.+.+. +-.+|..|..-|+..+....+. +.+ .-.
T Consensus 16 ~d~~~R~~AE~~L~q~-------~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~ 88 (1010)
T KOG1991|consen 16 SDAKERKAAEQQLNQL-------EKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKA 88 (1010)
T ss_pred CChHHHHHHHHHHHHh-------hcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHH
Confidence 5688998876666544 24488899999887654 3456777666666555432211 111 122
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch
Q 001249 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1114)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 263 (1114)
.+-..++.++-.. +..+|..-..|+..++..- +..-+|.++..+...+++++......++-|+..+++.+.
T Consensus 89 ~irenIl~~iv~~-p~~iRvql~~~l~~Ii~~D--------~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 89 VIRENILETIVQV-PELIRVQLTACLNTIIKAD--------YPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYE 159 (1010)
T ss_pred HHHHHHHHHHHhC-chHHHHHHHHHHHHHHhcC--------CcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHh
Confidence 2333444444443 5677877777777777642 334567777777778888888889999999999998763
Q ss_pred -----------HHHHHHHHHHHHHHHHHhccCCc-chhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhc
Q 001249 264 -----------RFLRRQLVDVVGSMLQIAEAESL-EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (1114)
Q Consensus 264 -----------~~~~~~~~~l~~~ll~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 331 (1114)
..+...++.+.+...+++...+. .-++....+....+++-. .-|.... .+..+...+..++..+.
T Consensus 160 ~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~--~LP~~L~-~~~~f~~W~~l~l~i~~ 236 (1010)
T KOG1991|consen 160 WKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY--ELPLELS-APETFTSWMELFLSILN 236 (1010)
T ss_pred hccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH--hCCHHhh-CchhHHHHHHHHHHHHc
Confidence 22333444444444444433211 112333445555555543 1221111 11233334444444443
Q ss_pred CCCCCcccccCCCCCccccCCCchhh---HHHHHHHHHHHcCCCcc--------------------hHHHHHHHHHhhCC
Q 001249 332 DIEDDPLWHSAETEDEDAGESSNYSV---GQECLDRLAIALGGNTI--------------------VPVASEQLPAYLAA 388 (1114)
Q Consensus 332 ~~~~~~~~~~~~~~~ed~~~~~~~~~---a~~~l~~l~~~~~~~~~--------------------~~~l~~~l~~~l~~ 388 (1114)
..-..+. ...|+|+..++..|++ |...|.++.+.+|.... +..++..+.++-+
T Consensus 237 rpvP~E~---l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~- 312 (1010)
T KOG1991|consen 237 RPVPVEV---LSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQ- 312 (1010)
T ss_pred CCCChhc---ccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3221111 1113344455666665 56667777777763210 1111111111111
Q ss_pred CChhHHHHHHHHHHHHHhhcH-----HHHHHhHHHHHH-HHHhcC--CCCChhHHHHHHHHHHHhHhhhchhHHhhhhhh
Q 001249 389 PEWQKHHAALIALAQIAEGCA-----KVMVKNLEQVLS-MVLNSF--RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1114)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~-----~~~~~~l~~i~~-~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 460 (1114)
+-|-.-+.-..++..+..+.. +.+.+|+..++. .+++.+ +|.+... .+ .+- .+|...
T Consensus 313 ~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deel-----------we---~DP-~EYiR~ 377 (1010)
T KOG1991|consen 313 QLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEEL-----------WE---EDP-YEYIRK 377 (1010)
T ss_pred cccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHH-----------Hh---cCH-HHHHHh
Confidence 222222222222222222211 133344443332 222222 1211100 00 000 011111
Q ss_pred hHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhc----CChhHHHHHHHHHHHHHHhhhh
Q 001249 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN----GKQMVQEGALTALASVADSSQE 536 (1114)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~----~~~~v~~~al~~l~~l~~~~~~ 536 (1114)
- +....|..+|+ .+|...+..++..-+++.+.+.++-++..+.+.-.+ .++.-+..|+.++|++++...+
T Consensus 378 ~----~Di~ed~~sp~--~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K 451 (1010)
T KOG1991|consen 378 K----FDIFEDGYSPD--TAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLK 451 (1010)
T ss_pred c----CchhcccCCCc--HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHcc
Confidence 1 11112211232 566777777777766666555555555544433222 3577889999999999976653
Q ss_pred hhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhh--hhHHHHHHHHHHHhcCCCCCCCchhhHHH
Q 001249 537 HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFR--DDAKQVMEVLMSLQGSQMETDDPTTSYML 614 (1114)
Q Consensus 537 ~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 614 (1114)
. .||-+.+--+|...+-..-....-.+|++|+..++.++. ..|. ..+.+.++...+...+ +.+-|++-.+.
T Consensus 452 ~-s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~----~df~d~~~l~~ale~t~~~l~~--d~~lPV~VeAa 524 (1010)
T KOG1991|consen 452 K-SPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSS----IDFKDPNNLSEALELTHNCLLN--DNELPVRVEAA 524 (1010)
T ss_pred C-CchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHh----ccCCChHHHHHHHHHHHHHhcc--CCcCchhhHHH
Confidence 2 344444333333333322233456799999999988873 2232 2344555555552221 34457777777
Q ss_pred HHHHHHHHHhc---cCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHH
Q 001249 615 QAWARLCKCLG---QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATA 691 (1114)
Q Consensus 615 ~~~~~l~~~~~---~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A 691 (1114)
-|+..+..... ..+.+++|.+|+.+++....- +-|+. +
T Consensus 525 lALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~-----------------End~L-------------t--------- 565 (1010)
T KOG1991|consen 525 LALQSFISNQEQADEKVSAHVPPIMQELLKLSNEV-----------------ENDDL-------------T--------- 565 (1010)
T ss_pred HHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhc-----------------chhHH-------------H---------
Confidence 77777766654 448999999999999988421 11111 1
Q ss_pred HHHHHHHHHHhhhhccccHHHHHHHhhh----cccc--cCCHHHHHHHHHhHHHHH--HHHHHHHHcCCCCCCCHHHHHH
Q 001249 692 CNMLCCYADELKEGFFPWIDQVAPTLVP----LLKF--YFHEEVRKAAVSAMPELL--RSAKLAIEKGLAPGRNESYVKQ 763 (1114)
Q Consensus 692 ~~~l~~~~~~~~~~~~p~~~~~~~~l~~----~l~~--~~~~~vr~~a~~al~~l~--~~~~~~~~~~~~~~~~~~~~~~ 763 (1114)
.++..++..+++.+.||..+++..+.. .+.. ...+..-..++.|+|.|= .....+++. .++-+++
T Consensus 566 -~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~------~p~vl~~ 638 (1010)
T KOG1991|consen 566 -NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLEN------HPEVLKQ 638 (1010)
T ss_pred -HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhc------cHHHHHH
Confidence 145567777788899998776666543 3331 123444445555555431 122233332 3445666
Q ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhh
Q 001249 764 LSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEES 843 (1114)
Q Consensus 764 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 843 (1114)
+...++|.+-..++++ ..++.+-+.+++..+. .-...+.+.++.+...+.+.+..
T Consensus 639 le~~~l~vi~~iL~~~-----i~dfyeE~~ei~~~~t--~~~~~Isp~mW~ll~li~e~~~~------------------ 693 (1010)
T KOG1991|consen 639 LEPIVLPVIGFILKND-----ITDFYEELLEIVSSLT--FLSKEISPIMWGLLELILEVFQD------------------ 693 (1010)
T ss_pred HHHHHHHHHHHHHHHh-----hHHHHHHHHHHHhhhh--hhhcccCHHHHHHHHHHHHHHhh------------------
Confidence 6666666655555543 1123333333322221 11123455566666666554321
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchh---hhHHHHHHhHhhhhcC-CCCHHHHHHHHHHHHHHHhHhhhhhhh
Q 001249 844 ELIKEENEQEEEVFDQVGEILGTLIKTFKAAFL---PFFDELSSYLTPMWGK-DKTAEERRIAICIFDDVAEQCREAALK 919 (1114)
Q Consensus 844 ~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~l~~~l~~~l~~-~~~~~~r~~a~~~l~~~~~~~~~~~~~ 919 (1114)
..-+....++..+...+...++.+. .|...++..+.+.+.. +....++..|..++..++..|+..+.+
T Consensus 694 --------~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq 765 (1010)
T KOG1991|consen 694 --------DGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQ 765 (1010)
T ss_pred --------hhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhh
Confidence 1122344456666655555444442 2344455555554433 234566788999999999999887778
Q ss_pred hhHhHHHHHHHhccC--CChhHHhhhhH------------HHHHHHhhcC-CCchHHHHHHHHHHHHhhcCCCCCChhhh
Q 001249 920 YYETYLPFLLEACND--ENQDVRQAAVY------------GLGVCAEFGG-SVVKPLVGEALSRLNVVIRHPNALQPENL 984 (1114)
Q Consensus 920 ~~~~i~~~ll~~l~~--~~~~vr~~a~~------------~lg~l~~~~~-~~~~~~~~~~l~~L~~~l~~~~~~~~~~~ 984 (1114)
|++.++...+..+.. .+...|..++. +||.+=..+- ..|.+.+-+.++.-.+ .
T Consensus 766 ~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~------------~ 833 (1010)
T KOG1991|consen 766 YIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKK------------V 833 (1010)
T ss_pred HhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHh------------h
Confidence 999999999988877 44444433332 3333333221 1222222222222211 1
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCc--------------
Q 001249 985 MAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNH-------------- 1050 (1114)
Q Consensus 985 ~~~~na~~al~~l~~~~~~~~~~~~~~~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~-------------- 1050 (1114)
.-|.-++-+++.++.-.+...-+.++++.+...+=. =..--..+++.....=+....+-..+..
T Consensus 834 HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~--L~~~Lp~ala~ra~~~ee~~~e~~~~~~~~~e~~~~d~dD~d 911 (1010)
T KOG1991|consen 834 HDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVE--LLLSLPEALAERAQVEEEDSEEGEEEDDDEEEDFIDDEDDID 911 (1010)
T ss_pred hhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhccccccccCCCCcchhhccCcccccc
Confidence 223446666676766532211245566555444310 0011122222222221110000000000
Q ss_pred CchhHHHHHHH-HHh-------------------c-----CCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHH
Q 001249 1051 QYLPKIVSVFA-EIL-------------------C-----GKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQ 1105 (1114)
Q Consensus 1051 ~~l~~i~~~~~-~~l-------------------~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 1105 (1114)
...+....-.. ..+ + +++.+..+...-++..+..++..-+.- ++.+.++|++++
T Consensus 912 ~~d~d~~~~~~~~~~~~~~~~~~ddd~d~~~~~~~ed~~f~t~LD~VD~f~~f~~~i~~lq~~d~~~-yq~l~~~L~~~q 990 (1010)
T KOG1991|consen 912 EDDQDYLDEYGELALEKEDSLDDDDDFDEDELDLEEDELFETPLDQVDPFQLFKEAITNLQSSDAVR-YQKLISTLTPEQ 990 (1010)
T ss_pred ccchhHHHhhccccccccccccccccccchhccccccccccCcccccchHHHHHHHHHhhhccChHH-HHHHHhcCCHHH
Confidence 00000000000 000 0 112334567888999999999887776 999999999999
Q ss_pred HHHHHhhh
Q 001249 1106 QLALQSIL 1113 (1114)
Q Consensus 1106 ~~~l~~~~ 1113 (1114)
|+.||.++
T Consensus 991 ~~~lq~I~ 998 (1010)
T KOG1991|consen 991 QDSLQTIL 998 (1010)
T ss_pred HHHHHHHH
Confidence 99999875
No 21
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=9e-17 Score=186.76 Aligned_cols=467 Identities=16% Similarity=0.220 Sum_probs=308.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHHHHhccCC-cchhHHHHHHHHHHHHHHhhh
Q 001249 230 PLMMRTLTESLNNGNEATAQEALELLIELAGTEP--RFLRRQLVDVVGSMLQIAEAES-LEEGTRHLAIEFVITLAEARE 306 (1114)
Q Consensus 230 p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l~~~ll~~~~~~~-~~~~vr~~a~~~l~~l~~~~~ 306 (1114)
..+.+.+.....++++..|+.++-.+..++...+ +...-+.++|...+...+++.+ ...++....+..++.+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~-- 894 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS-- 894 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc--
Confidence 3466677777778999999998877777766543 2233445566655555554321 2223333344444444331
Q ss_pred ccchhhhcchhhHHHHHHHHHHhhcCCCC-------Cc-ccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHH
Q 001249 307 RAPGMMRKLPQFINRLFAILMSMLLDIED-------DP-LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVA 378 (1114)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-------~~-~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l 378 (1114)
+.-+.++..|++.+....- +. -+..+- -...-+.. .-...+-|-.|+..+|..+++..+
T Consensus 895 ----------~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~-Lg~Tp~Gg--~isTYKELc~LASdl~qPdLVYKF 961 (1702)
T KOG0915|consen 895 ----------SLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGT-LGKTPDGG--KISTYKELCNLASDLGQPDLVYKF 961 (1702)
T ss_pred ----------hhHHHHHHHHHHHHhccccccceeccchhcccCCc-CCCCCCCC--cchHHHHHHHHHhhcCChHHHHHH
Confidence 2224455555555543211 10 011000 00000000 112345677788888754443333
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhh
Q 001249 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1114)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1114)
+ .-.-.+..|..|.+|.+.++.+++...+.+.+|++.++|.+.++=-||++.|+.+.....+.+...-...+ ..|+
T Consensus 962 M---~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v-d~y~ 1037 (1702)
T KOG0915|consen 962 M---QLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV-DEYL 1037 (1702)
T ss_pred H---HHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH-HHHH
Confidence 3 22334568999999999999999999999999999999999999999999999998888888876654444 7899
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHH---HHHHHHHHHhhh
Q 001249 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGA---LTALASVADSSQ 535 (1114)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~a---l~~l~~l~~~~~ 535 (1114)
.+|+..|+..+.+ ..||||+++|.||..++..-+.+.+...++.++..++...++-...||+.+ ..+++.++-.+.
T Consensus 1038 neIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~ 1116 (1702)
T KOG0915|consen 1038 NEILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC 1116 (1702)
T ss_pred HHHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999 999999999999999999877666778899999999999988877777764 455565554443
Q ss_pred h-----hhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCc-h
Q 001249 536 E-----HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDP-T 609 (1114)
Q Consensus 536 ~-----~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~-~ 609 (1114)
+ .-...++.++|+|..-= .-.....+|.-++.++..++...| ..+.||++++++.++...+. + ++ +
T Consensus 1117 d~~~~~~~~~~l~~iLPfLl~~g---ims~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~-l---E~~v 1188 (1702)
T KOG0915|consen 1117 DVTNGAKGKEALDIILPFLLDEG---IMSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSE-L---EPQV 1188 (1702)
T ss_pred ccCCcccHHHHHHHHHHHHhccC---cccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccc-c---chHH
Confidence 2 22346778888876521 112345678889999999999999 57999999999998875542 1 11 1
Q ss_pred hhHH-HHH-------HH--------------HHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcc
Q 001249 610 TSYM-LQA-------WA--------------RLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDS 667 (1114)
Q Consensus 610 ~~~~-~~~-------~~--------------~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1114)
..|. +.+ +. .+-.++.--=..-+..++|.+.+.+..
T Consensus 1189 LnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~---------------------- 1246 (1702)
T KOG0915|consen 1189 LNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG---------------------- 1246 (1702)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc----------------------
Confidence 1111 011 00 000000000001123344444444321
Q ss_pred cchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHH
Q 001249 668 METITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLA 747 (1114)
Q Consensus 668 ~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~ 747 (1114)
+|- +..|..+..++..++..++..+.||.+.++..+++.+.+ .++.+|++-+.|++.|++..
T Consensus 1247 -----------sVg---l~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG~L~k~S--- 1308 (1702)
T KOG0915|consen 1247 -----------SVG---LGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMGYLAKFS--- 1308 (1702)
T ss_pred -----------cCC---CCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHHHHHhcC---
Confidence 011 224667788999999999999999999999999999998 59999999999999998754
Q ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHH
Q 001249 748 IEKGLAPGRNESYVKQLSDFIIPALV 773 (1114)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~i~~~l~ 773 (1114)
.++..+.++..++..++
T Consensus 1309 ---------s~dq~qKLie~~l~~~l 1325 (1702)
T KOG0915|consen 1309 ---------SPDQMQKLIETLLADLL 1325 (1702)
T ss_pred ---------ChHHHHHHHHHHHHHHh
Confidence 34456666666555444
No 22
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1e-13 Score=153.74 Aligned_cols=604 Identities=17% Similarity=0.226 Sum_probs=369.3
Q ss_pred ChHHHHHHHHHHcCC-ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 20 DSAPFETLISHLMST-SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 20 ~~~~l~~ll~~~~s~-d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
+.+.++.++..++++ +.+...+++++|...+. .|.+| ..-.++++.+..+++|.++|+.|.-.++.+ |+..++
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~-S~Q~w-~~s~~llQ~~k~~evqyFGAltL~~ki~~~----~e~~~~ 78 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQC-SQQGW-HFSWQLLQPDKSSEVQYFGALTLHDKINTR----WEECPA 78 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hHHHH-HHHHHHcCCCchhHHHHHhHHHHHHHHHhh----hccCCh
Confidence 357888889999988 55667777888888877 56664 566778887888999999999999999997 999999
Q ss_pred HHHHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCC-----hhhH-HHHHHHHHHh
Q 001249 99 HTQSSLKSMLLQSIQLE--SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS-----VKLQ-ESAFLIFAQL 170 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e--~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~-----~~~r-~~al~~l~~l 170 (1114)
+...+++..++..+... ....|-++.+-.++.++-+..+ +.||.-+..++++++... .+.+ ..-+..|..+
T Consensus 79 ~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~-d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~ 157 (982)
T KOG2022|consen 79 NEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVP-DLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFM 157 (982)
T ss_pred hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHcc-ccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccC
Confidence 99999999999987642 3445677778788888777777 799999999998886532 1222 2233444433
Q ss_pred hhhhh-------------hhhhhhHHHHHHHHHHhhcCCC---Ch----HHHHHHHHHHHHHHHhcCCcc-hH-------
Q 001249 171 SQYIG-------------DTLTPHLKHLHAVFLNCLTNSN---NP----DVKIAALNAVINFIQCLTSSA-DR------- 222 (1114)
Q Consensus 171 ~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~---~~----~vr~~a~~~l~~l~~~~~~~~-~~------- 222 (1114)
..... .++.......++.+...++... .. ..+..+++|+..++.++.-+. +.
T Consensus 158 p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~~~l 237 (982)
T KOG2022|consen 158 PAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQITQVL 237 (982)
T ss_pred cHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 33321 1122233444555555554431 12 356778888888877432110 00
Q ss_pred -----------------------------------------------hHHHhhHHHHHHHHHH------HHhCCC--HHH
Q 001249 223 -----------------------------------------------DRFQDLLPLMMRTLTE------SLNNGN--EAT 247 (1114)
Q Consensus 223 -----------------------------------------------~~~~~l~p~ll~~l~~------~~~~~~--~~~ 247 (1114)
+....+++.+...+.. ..+++| .+.
T Consensus 238 l~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~e~ 317 (982)
T KOG2022|consen 238 LDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASEEE 317 (982)
T ss_pred HHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchhHH
Confidence 0000111111111111 111222 222
Q ss_pred HHHHHHHHHHHHccchHHHHHH---------HHHHHHHHHHHhccCC---cchhHHHHHHHHHHHHHHhhh-----ccch
Q 001249 248 AQEALELLIELAGTEPRFLRRQ---------LVDVVGSMLQIAEAES---LEEGTRHLAIEFVITLAEARE-----RAPG 310 (1114)
Q Consensus 248 ~~~~~~~l~~l~~~~~~~~~~~---------~~~l~~~ll~~~~~~~---~~~~vr~~a~~~l~~l~~~~~-----~~~~ 310 (1114)
....+.+....++.+...+-.+ +..++..++.+.+.+. .++.+-..++.||.++.+... ..+.
T Consensus 318 i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~ 397 (982)
T KOG2022|consen 318 IVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQI 397 (982)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCc
Confidence 3333344444444333222222 2234444444443332 345566678899999877411 0000
Q ss_pred hhhcc-hhhHHHHHHHHHHhhcCCCCCc--ccccCCCCCccccCCCc-hhhHHHHHHHHHHHcCCCcchHHHHHHHHHhh
Q 001249 311 MMRKL-PQFINRLFAILMSMLLDIEDDP--LWHSAETEDEDAGESSN-YSVGQECLDRLAIALGGNTIVPVASEQLPAYL 386 (1114)
Q Consensus 311 ~~~~~-~~~~~~l~~~l~~~l~~~~~~~--~~~~~~~~~ed~~~~~~-~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 386 (1114)
..... .+...+++..++..+.-+.+.. .|.+++.| .... ++.-.+++...-..+| +.++..+...+.+++
T Consensus 398 ~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e-----~F~~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~ 471 (982)
T KOG2022|consen 398 KKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSRE-----QFESYRKDISDLLMSSYSILG-DGLLDFLIDTLEQAL 471 (982)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHH-----HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhh
Confidence 00001 1344456666666655443321 35443221 1222 2334455555555666 788888888888888
Q ss_pred CCCC-----hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhc-CCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhh
Q 001249 387 AAPE-----WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1114)
Q Consensus 387 ~~~~-----~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 460 (1114)
.+.+ |.+-++.++.+..+++..+....+.++.++...... +.-.+|..-..+...+|.++.+++.+- .|++.
T Consensus 472 aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln~ 549 (982)
T KOG2022|consen 472 AAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLNP 549 (982)
T ss_pred hccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--cccCc
Confidence 8665 999999999999999988876666666666654432 334588889999999999999998764 68999
Q ss_pred hHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhhh-hh
Q 001249 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQ-EH 537 (1114)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~--~~v~~~al~~l~~l~~~~~-~~ 537 (1114)
.+|.+++.+.. ++.-..+...|..+|+.|+. .+.||.+.++..+-..+...+ ...|..++.++|-+..... +.
T Consensus 550 sl~~L~~~Lh~---sk~s~q~i~tl~tlC~~C~~-~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe 625 (982)
T KOG2022|consen 550 SLPLLFQGLHN---SKESEQAISTLKTLCETCPE-SLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEE 625 (982)
T ss_pred hHHHHHHHhcC---chHHHHHHHHHHHHHHhhhh-hCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHh
Confidence 99999999976 33335667779999999985 488999999999888887653 6788999999999988776 45
Q ss_pred hhhhHhhhhHHHHHHHhhcc----CccchhhhHH-HHHHHHHHHHHhc-h----------hh--------hhhhHHHHHH
Q 001249 538 FQKYYDAVMPFLKAILVNAT----DKSNRMLRAK-SMECISLVGMAVG-K----------DK--------FRDDAKQVME 593 (1114)
Q Consensus 538 ~~~~~~~i~~~L~~~l~~~~----~~~~~~lr~~-a~~~l~~i~~~~~-~----------~~--------f~~~~~~i~~ 593 (1114)
..+|+..++..+..-++... +.....+|.. -+.|++.+..++- + .+ ......++|+
T Consensus 626 ~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~ 705 (982)
T KOG2022|consen 626 IPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIP 705 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHH
Confidence 56788888888877666531 1112222221 2445555555432 0 00 1122344555
Q ss_pred HHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCC-ccchhhhhHHHHHhc
Q 001249 594 VLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDF-LPYMSVVMPPLLQSA 643 (1114)
Q Consensus 594 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~l~~i~~~ll~~~ 643 (1114)
++..+.+.....++ +.+.+...+..=....++.| .|++|.+.+.+....
T Consensus 706 ~~~kv~s~~~~~s~-vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~ 755 (982)
T KOG2022|consen 706 VFEKVLSMWLGLSD-VVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFL 755 (982)
T ss_pred HHHHHHHHHhcchh-HHHHHHHHHHhccccccccchhhhHHHHHHHHHHhc
Confidence 55443332222222 22332222221123345567 888998888877743
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.83 E-value=6.5e-15 Score=183.29 Aligned_cols=765 Identities=16% Similarity=0.176 Sum_probs=437.0
Q ss_pred hhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcch
Q 001249 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1114)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 221 (1114)
.+.+|.|...+.+++...|..+..++..+..+-...-.-.....+|.+...|++. +.+.|..|+.+|..+...-.+...
T Consensus 57 aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~ 135 (2102)
T PLN03200 57 SQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHV 135 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhh
Confidence 4568889999999999999999988888876522110011245677888888887 899999999999998864210001
Q ss_pred H-h--HHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCCcchhHHHHHHHH
Q 001249 222 R-D--RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEF 297 (1114)
Q Consensus 222 ~-~--~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~ 297 (1114)
+ . .-.+.+|.++..+.... ..+..++..++.+|..++......-...+. ..++.++..+.. .++..+..|..+
T Consensus 136 ~~~I~v~~GaVp~Lv~lL~~gs-k~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS--~d~~lQ~eAa~a 212 (2102)
T PLN03200 136 GSKIFSTEGVVPSLWDQLQPGN-KQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSS--GNSDAQANAASL 212 (2102)
T ss_pred hhhhhhhcCChHHHHHHHhCCc-hhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHH
Confidence 1 1 11345666666544311 012223455567777777655433332222 356666666643 356777777776
Q ss_pred HHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHH
Q 001249 298 VITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPV 377 (1114)
Q Consensus 298 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 377 (1114)
+..++.. .+. ....+. . ...+|.
T Consensus 213 La~Lass---~ee--------------------------------------------------~~~aVI-e---aGaVP~ 235 (2102)
T PLN03200 213 LARLMMA---FES--------------------------------------------------SISKVL-D---AGAVKQ 235 (2102)
T ss_pred HHHHHcC---ChH--------------------------------------------------HHHHHH-H---CCCHHH
Confidence 6666552 110 000000 0 123444
Q ss_pred HHHHHHHhhC-CCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCC---------hhHHHHHHHHHHHhH
Q 001249 378 ASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPH---------PRVRWAAINAIGQLS 446 (1114)
Q Consensus 378 l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~---------~~vr~~a~~~l~~l~ 446 (1114)
+++ .+. +.+...|+.|..+|+.++.+..+.-...+. ..+|.++..+..++ ...+..|.|+|+.++
T Consensus 236 LV~----LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIc 311 (2102)
T PLN03200 236 LLK----LLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANIC 311 (2102)
T ss_pred HHH----HHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHh
Confidence 444 343 345688999999999999876542221111 23555555554433 446899999999998
Q ss_pred hhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc-ccCch--HHHHHHHHHHhhcCChh-HHHH
Q 001249 447 TDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI-LTPYL--DGIVSKLLVLLQNGKQM-VQEG 522 (1114)
Q Consensus 447 ~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-l~~~l--~~il~~L~~~l~~~~~~-v~~~ 522 (1114)
... ..+++.|.+.+....+..+...+|+++..+...+.... ....+ ..+.+.|.+++.++++. +++.
T Consensus 312 gg~---------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~ 382 (2102)
T PLN03200 312 GGM---------SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQER 382 (2102)
T ss_pred CCc---------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHH
Confidence 653 34677777666652355566778899888855443211 00111 24567888999888655 4777
Q ss_pred HHHHHHHHHHhhh--hhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHH
Q 001249 523 ALTALASVADSSQ--EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA--KQVMEVLMSL 598 (1114)
Q Consensus 523 al~~l~~l~~~~~--~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~--~~i~~~l~~~ 598 (1114)
+..++..+..... ..+ +-....+.|...+.... ...+..+..++..++..- ......+ ...++.++.+
T Consensus 383 V~eALasl~gN~~l~~~L--~~~daik~LV~LL~~~~----~evQ~~Av~aL~~L~~~~--~e~~~aIi~~ggIp~LV~L 454 (2102)
T PLN03200 383 IIEALASLYGNAYLSRKL--NHAEAKKVLVGLITMAT----ADVQEELIRALSSLCCGK--GGLWEALGGREGVQLLISL 454 (2102)
T ss_pred HHHHHHHhcCChHHHHHH--HhccchhhhhhhhccCC----HHHHHHHHHHHHHHhCCC--HHHHHHHHHcCcHHHHHHH
Confidence 7888766443321 111 11345666777775432 346788888888877431 1111111 1134555554
Q ss_pred hcCCCCCCCchhhHHHHHHHHHHHHhccCCccc-hhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCce
Q 001249 599 QGSQMETDDPTTSYMLQAWARLCKCLGQDFLPY-MSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKR 677 (1114)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1114)
..+ .+...+..+..+++.++....+.-... =...+|.+.+.+...
T Consensus 455 L~s---~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~------------------------------- 500 (2102)
T PLN03200 455 LGL---SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG------------------------------- 500 (2102)
T ss_pred HcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-------------------------------
Confidence 442 234467777777877765322211111 123566677776421
Q ss_pred eeecchhHHHHHHHHHHHHHHHHHhhhhccccHH--HHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCC
Q 001249 678 IGIKTSVLEEKATACNMLCCYADELKEGFFPWID--QVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPG 755 (1114)
Q Consensus 678 ~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~--~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~ 755 (1114)
....|+.|+-+|+.++.+ .......+. ..++.++.+++.. +..+++.|+.+|.+++...
T Consensus 501 ------~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~----------- 561 (2102)
T PLN03200 501 ------SQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTA----------- 561 (2102)
T ss_pred ------CHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcc-----------
Confidence 023467788889988763 222233332 3566677777764 7889999999999886532
Q ss_pred CCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHH------HHHHHHHHHHHHHHHhhHHHH
Q 001249 756 RNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQV------RSIVDEIKQVITASSSRKRER 829 (1114)
Q Consensus 756 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~------~~~~~~l~~~l~~~~~~~~~~ 829 (1114)
+.... +.++..+.. +++.+...++..+..++..... .+.. ...++.+..++..
T Consensus 562 -d~~~I--------~~Lv~LLls-dd~~~~~~aL~vLgnIlsl~~~---~d~~~~g~~~~ggL~~Lv~LL~s-------- 620 (2102)
T PLN03200 562 -DAATI--------SQLTALLLG-DLPESKVHVLDVLGHVLSVASL---EDLVREGSAANDALRTLIQLLSS-------- 620 (2102)
T ss_pred -chhHH--------HHHHHHhcC-CChhHHHHHHHHHHHHHhhcch---hHHHHHhhhccccHHHHHHHHcC--------
Confidence 22112 334444444 3445555566666555443221 0000 0112222222221
Q ss_pred HHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHH-HHHHhHhhhhcCCCCHHHHHHHHHHHHH
Q 001249 830 AERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFD-ELSSYLTPMWGKDKTAEERRIAICIFDD 908 (1114)
Q Consensus 830 ~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~r~~a~~~l~~ 908 (1114)
.....+..++.++..++....+.....+. ..+|-++..+. +.+.+.+..+...++.
T Consensus 621 ----------------------gs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs-s~~~~v~keAA~AL~n 677 (2102)
T PLN03200 621 ----------------------SKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT-NNTEAVATQSARALAA 677 (2102)
T ss_pred ----------------------CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh-cCChHHHHHHHHHHHH
Confidence 11234555777888887655543222222 35566666664 4555667777778777
Q ss_pred HHhHhhhhhh-hhhH-hHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhh
Q 001249 909 VAEQCREAAL-KYYE-TYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMA 986 (1114)
Q Consensus 909 ~~~~~~~~~~-~~~~-~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~ 986 (1114)
++......-. .++. ..+|++++.+++++..++..|+.+|+.++........-.-...++.|.+++... +...
T Consensus 678 L~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G------~~~~ 751 (2102)
T PLN03200 678 LSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG------TLEG 751 (2102)
T ss_pred HHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC------ChHH
Confidence 7754332211 2333 478999999999999999999999999998764321111234678888888765 3679
Q ss_pred HHHHHHHHHHHHhhcCCC--C----CHhhHHHHHHhcCCCCCcHH--HHHHHHHHHHHHHhhcCCc--------ccCcCc
Q 001249 987 YDNAVSALGKICQFHRDS--I----DAAQVVPAWLNCLPIKGDLI--EAKIVHEQLCSMVERSDSD--------LLGPNH 1050 (1114)
Q Consensus 987 ~~na~~al~~l~~~~~~~--~----~~~~~~~~~l~~Lp~~~d~~--e~~~~~~~l~~l~~~~~~~--------~~~~~~ 1050 (1114)
|+||++++..++...+.. + .....+..++..|.- .|.+ ....+...|..+.+.+... ++....
T Consensus 752 k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~-~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p 830 (2102)
T PLN03200 752 KRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS-TDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVP 830 (2102)
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc-CCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhcc
Confidence 999999999999887632 1 112244555555532 2222 2233667776666432211 111111
Q ss_pred CchhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc
Q 001249 1051 QYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSS 1100 (1114)
Q Consensus 1051 ~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1100 (1114)
..+..++.++.. ....+..+..++|..+.++.|.. +...+..
T Consensus 831 ~~l~~l~~~l~~-------~~p~~~~kai~il~~~~~~~~~~-~~~~~~~ 872 (2102)
T PLN03200 831 SSLEPLVRCLAE-------GHPLVQDKAIEILSRLCRDQPVV-LGDLIAN 872 (2102)
T ss_pred CchHHHHHHHHc-------CChHHHHHHHHHHHHHhccChhH-HHHHHhc
Confidence 123333444321 24578889999999999887765 5555543
No 24
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.1e-14 Score=169.79 Aligned_cols=561 Identities=14% Similarity=0.180 Sum_probs=336.7
Q ss_pred cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHH--HHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhc
Q 001249 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 450 (1114)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1114)
.....+...+...+.|+++..|.|++.++-.++.+|+. ...-+.++|...+...|.|.+..++..|...+|-+-+--.
T Consensus 814 ~~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd 893 (1702)
T KOG0915|consen 814 TRETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGD 893 (1702)
T ss_pred ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCC
Confidence 34445667777788899999999999999999998873 4556778888999999999999999999999987766544
Q ss_pred hhHHhhhhhhhHHHHHhhccCCCChh---H-------------------HHHHHHHHHHhhhcCCcccccCchHHHHHHH
Q 001249 451 PDLQNQFHPQVLPALAGAMDDFQNPR---V-------------------QAHAASAVLNFSENCTPEILTPYLDGIVSKL 508 (1114)
Q Consensus 451 ~~~~~~~~~~il~~l~~~l~~~~~~~---v-------------------~~~a~~al~~l~~~~~~~~l~~~l~~il~~L 508 (1114)
...+ ..++..|++.|.. .... | ......-|.+++..++ -|+++-.+
T Consensus 894 ~~~k----~~LV~sL~~tl~~-Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKF 961 (1702)
T KOG0915|consen 894 SSLK----KSLVDSLVNTLTG-GKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKF 961 (1702)
T ss_pred chhH----HHHHHHHHHHHhc-cccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHH
Confidence 4443 3444444444433 1110 0 0111112222222222 23455666
Q ss_pred HHHhhcC-ChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhh
Q 001249 509 LVLLQNG-KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDD 587 (1114)
Q Consensus 509 ~~~l~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~ 587 (1114)
+++.++. .+.-|..|.-.+|.++...++.+.||+..++|.|...=
T Consensus 962 M~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~---------------------------------- 1007 (1702)
T KOG0915|consen 962 MQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQ---------------------------------- 1007 (1702)
T ss_pred HHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhc----------------------------------
Confidence 6655543 35566677777777777777777777777777766541
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcc
Q 001249 588 AKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDS 667 (1114)
Q Consensus 588 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1114)
++.+-.++..+...|..+..--+.-...|+..|+..++..+.. .+
T Consensus 1008 ---------------yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~--------------------ke 1052 (1702)
T KOG0915|consen 1008 ---------------YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTS--------------------KE 1052 (1702)
T ss_pred ---------------cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc--------------------hh
Confidence 1111123333444444443333344566788888888877743 12
Q ss_pred cchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhh-hhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHH
Q 001249 668 METITLGDKRIGIKTSVLEEKATACNMLCCYADELK-EGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKL 746 (1114)
Q Consensus 668 ~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~-~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~ 746 (1114)
| ..|+++|.+|..+..+-+ +.+...++++...+++.++| ..+.||++|-.+...+.+.+..
T Consensus 1053 w-----------------RVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD-IKEsVR~aa~~~~~~lsKl~vr 1114 (1702)
T KOG0915|consen 1053 W-----------------RVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD-IKESVREAADKAARALSKLCVR 1114 (1702)
T ss_pred H-----------------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 3 357899999999988754 34667788999999999987 4999999988877666655433
Q ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhH
Q 001249 747 AIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRK 826 (1114)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 826 (1114)
... + ..+...++.++.++|-|+..-.-....+++...+..+.++.+..|..+-| ++..+...+...+.......
T Consensus 1115 ~~d---~--~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP-~~~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1115 ICD---V--TNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKP-HFPKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred hcc---c--CCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcc-hhhHHHHHHHHHccccchHH
Confidence 222 2 12335678889999988865444556788888999999999888752221 22223222222211111000
Q ss_pred HHHHHhhcCCCCChHhhhhhhh---hhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHH
Q 001249 827 RERAERAKAEDFDAEESELIKE---ENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAI 903 (1114)
Q Consensus 827 ~~~~~~~~~~~~d~~~~~~~~e---~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~ 903 (1114)
-.....+- +..+.+.++. +.......++++..| +.+.... .+..++|.+...++++-.-..|..+.
T Consensus 1189 LnYls~r~----~~~e~ealDt~R~s~aksspmmeTi~~c----i~~iD~~---vLeelip~l~el~R~sVgl~Tkvg~A 1257 (1702)
T KOG0915|consen 1189 LNYLSLRL----INIETEALDTLRASAAKSSPMMETINKC----INYIDIS---VLEELIPRLTELVRGSVGLGTKVGCA 1257 (1702)
T ss_pred HHHHHHhh----hhhHHHHHHHHHHhhhcCCcHHHHHHHH----HHhhhHH---HHHHHHHHHHHHHhccCCCCcchhHH
Confidence 00000000 0111111111 001111222333333 3332222 25668888888877665666788888
Q ss_pred HHHHHHHhHhhhhhhhhhHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCC-CchHHHHHHHHHHHHhhcCCCCCChh
Q 001249 904 CIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGS-VVKPLVGEALSRLNVVIRHPNALQPE 982 (1114)
Q Consensus 904 ~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~-~~~~~~~~~l~~L~~~l~~~~~~~~~ 982 (1114)
.++.-++..+|....||...++..++.+++|.++.+|+.-+.++|.++....+ .+..++ +.+...+..+.
T Consensus 1258 ~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLi----e~~l~~~l~k~----- 1328 (1702)
T KOG0915|consen 1258 SFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLI----ETLLADLLGKD----- 1328 (1702)
T ss_pred HHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHH----HHHHHHHhccC-----
Confidence 89999999999999999999999999999999999999999999999998875 344444 33333333221
Q ss_pred hhhhHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHH
Q 001249 983 NLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVF 1060 (1114)
Q Consensus 983 ~~~~~~na~~al~~l~~~~~~~~--~~~~~~~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~ 1060 (1114)
...+.-+|..+..+..+.++.+ +.+.++|.++=.+. +++.++...+.-+ +...-|.-.+..+-+.++++..+
T Consensus 1329 -es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~--ee~Ka~q~Lw~dv---W~e~vsggagtvrl~~~eiLn~i 1402 (1702)
T KOG0915|consen 1329 -ESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMH--EEEKANQELWNDV---WAELVSGGAGTVRLYLLEILNLI 1402 (1702)
T ss_pred -CCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHh--HHHHHHHHHHHHH---HHHhCCCCcchhhhhHHHHHHHH
Confidence 1122335555555444444444 56788886543332 3333444444432 22222222222111355666655
Q ss_pred HHHh
Q 001249 1061 AEIL 1064 (1114)
Q Consensus 1061 ~~~l 1064 (1114)
++..
T Consensus 1403 ceni 1406 (1702)
T KOG0915|consen 1403 CENI 1406 (1702)
T ss_pred HHHh
Confidence 5544
No 25
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.80 E-value=7e-13 Score=140.79 Aligned_cols=497 Identities=17% Similarity=0.257 Sum_probs=317.4
Q ss_pred CChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
.|.+-+.++......+++..++||+..|.+|++ +|++| ...-+||..+..|+.+..|..+|.+++..+ |+-++.
T Consensus 11 LdiallDkVVttfyqg~g~~q~qAq~iLtkFq~-~PdaW-tkad~IL~~S~~pqskyiALs~LdklIttk----Wkllp~ 84 (1053)
T COG5101 11 LDIALLDKVVTTFYQGDGRKQEQAQRILTKFQE-LPDAW-TKADYILNNSKLPQSKYIALSLLDKLITTK----WKLLPE 84 (1053)
T ss_pred cCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh-CchHH-HHHHHHHhcccCcchhhhHHHHHHHHHHhh----hhhCCc
Confidence 356678888999999999999999999999999 89986 778889999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHhhc-hhhhHH-------HHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHh
Q 001249 99 HTQSSLKSMLLQSIQLE-SAKSIS-------KKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e-~~~~vr-------~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l 170 (1114)
+.+..+|.-..+.+..- .+..+| +.+--.+-.|++.+|| ..||+++|.+++..+ .+.++.+..+.+|..+
T Consensus 85 ~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP-~nWP~FIpeli~~S~-~s~~vCeNnmivLklL 162 (1053)
T COG5101 85 GMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWP-RNWPTFIPELINVSQ-ISMEVCENNMIVLKLL 162 (1053)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcc-cccchhhHHHHhhcc-chHHHHhccHHHHHHh
Confidence 99999999998877531 233443 4455566778889999 799999999999766 5667888889999888
Q ss_pred hhhhh----hh------------hhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHH
Q 001249 171 SQYIG----DT------------LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR 234 (1114)
Q Consensus 171 ~~~~~----~~------------~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~ 234 (1114)
.+++- ++ +...+++++.++.+.|....++..-.+.+..+..++.+++-. -. +...+++
T Consensus 163 sEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~---yI---feTnIie 236 (1053)
T COG5101 163 SEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLD---YI---FETNIIE 236 (1053)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchh---HH---HHHHHHH
Confidence 77632 11 223567888888888876557777788888888888876411 11 1223444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccc--h-------HHHHHHHH---------------------------------H
Q 001249 235 TLTESLNNGNEATAQEALELLIELAGTE--P-------RFLRRQLV---------------------------------D 272 (1114)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~--~-------~~~~~~~~---------------------------------~ 272 (1114)
.+..... ..++.|..++.||.+++... | ..+.-|+. .
T Consensus 237 Lv~~~f~-s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~ 315 (1053)
T COG5101 237 LVLEHFN-SMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQK 315 (1053)
T ss_pred HHHHHhc-cCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHH
Confidence 4444333 25666777777777666432 1 00111110 0
Q ss_pred HHHHH-------HHHhccCC------------------cchhHHHHHHHHHHHHHHh--hh--cc------c--------
Q 001249 273 VVGSM-------LQIAEAES------------------LEEGTRHLAIEFVITLAEA--RE--RA------P-------- 309 (1114)
Q Consensus 273 l~~~l-------l~~~~~~~------------------~~~~vr~~a~~~l~~l~~~--~~--~~------~-------- 309 (1114)
+..++ +..++.++ .+.++-..|++.|..++-. .+ +. |
T Consensus 316 LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s 395 (1053)
T COG5101 316 LAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGS 395 (1053)
T ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccc
Confidence 00000 01111110 1223344566666655431 00 00 1
Q ss_pred -------hhhhcc--h-hhHHHHHH----HHHHhhcCCCCCcccccCCCCCc-------cccCCCchhhHHHHHHHHHHH
Q 001249 310 -------GMMRKL--P-QFINRLFA----ILMSMLLDIEDDPLWHSAETEDE-------DAGESSNYSVGQECLDRLAIA 368 (1114)
Q Consensus 310 -------~~~~~~--~-~~~~~l~~----~l~~~l~~~~~~~~~~~~~~~~e-------d~~~~~~~~~a~~~l~~l~~~ 368 (1114)
.+.... . .....++. .+...|..+++- .-..+|+.| |.|.-..++....+|-.++..
T Consensus 396 ~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEV--liVendegEivRefvketDtI~lYksmRevLvyLthL 473 (1053)
T COG5101 396 QAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEV--LIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHL 473 (1053)
T ss_pred hhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceE--EEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhh
Confidence 000000 0 01111222 222223222210 000111111 111122344455566555533
Q ss_pred cCCCcchHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHH-----HhcCCCCChhHHHHHHH
Q 001249 369 LGGNTIVPVASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMV-----LNSFRDPHPRVRWAAIN 440 (1114)
Q Consensus 369 ~~~~~~~~~l~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l-----~~~l~d~~~~vr~~a~~ 440 (1114)
.- .+.-..++..+-..+.+. +|..-..-++++|.++...++... ..+-.++..+ .+..+|....|-....+
T Consensus 474 ~v-~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMy 552 (1053)
T COG5101 474 IV-DDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMY 552 (1053)
T ss_pred hh-hhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceee
Confidence 32 344455566666666665 467778889999999877765433 2333444433 34556777777777888
Q ss_pred HHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc-------ccCchHHHHHHHHHHhh
Q 001249 441 AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI-------LTPYLDGIVSKLLVLLQ 513 (1114)
Q Consensus 441 ~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-------l~~~l~~il~~L~~~l~ 513 (1114)
.+|++-+.+.... .++..++..+++.+.. .+..|+.-||..+-.+++.|+... -+|++..|+..+-+.-.
T Consensus 553 vvGQYpRFLkahw--~FLkTVv~KLFEFMhE-~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~ 629 (1053)
T COG5101 553 VVGQYPRFLKAHW--SFLKTVVKKLFEFMHE-DHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTG 629 (1053)
T ss_pred eeccchHHHHHHH--HHHHHHHHHHHHHHhh-hhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcc
Confidence 9999888777665 6889999999999988 889999999999999988876432 35788888887777666
Q ss_pred cCChhHHHHHHHHHHHHHHhhhh
Q 001249 514 NGKQMVQEGALTALASVADSSQE 536 (1114)
Q Consensus 514 ~~~~~v~~~al~~l~~l~~~~~~ 536 (1114)
+-.+.-+..-+.+.|.+++..+.
T Consensus 630 dL~pqQ~htfYeAcg~vIse~p~ 652 (1053)
T COG5101 630 DLEPQQKHTFYEACGMVISEVPK 652 (1053)
T ss_pred cCChHHHhHHHHHHhHHHhccch
Confidence 66666667788888888877654
No 26
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.80 E-value=3e-14 Score=150.55 Aligned_cols=682 Identities=15% Similarity=0.196 Sum_probs=394.3
Q ss_pred ChHHHHHHHHHHcCCChHHHHHHHHHHHHhhh-cCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCC--CCccc-
Q 001249 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQ-QDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD--SFLWP- 94 (1114)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~-~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~--~~~w~- 94 (1114)
+.-.+..+|....+++..-|+.+-..|..=.- .-|+.....++-++-+ +-+.+-|++-.-++-+.+..-+ ...|.
T Consensus 166 ~Er~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvh 245 (975)
T COG5181 166 DERDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVH 245 (975)
T ss_pred chHhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhccccccccee
Confidence 44466667777778888889888887764222 1334434445544444 5566677777766666654421 00010
Q ss_pred ---------CCCHHHHH-----HHHHHHHHH--Hh----------hchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHH
Q 001249 95 ---------RLSLHTQS-----SLKSMLLQS--IQ----------LESAKSISKKLCDTVSELASNILPENGWPELLPFM 148 (1114)
Q Consensus 95 ---------~l~~~~~~-----~i~~~ll~~--l~----------~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l 148 (1114)
.++++.+. +|...|... |. ...++-||+..+.+++.+|.+. ..++++|++
T Consensus 246 kILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al----gv~~llpfl 321 (975)
T COG5181 246 KILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL----GVEELLPFL 321 (975)
T ss_pred eEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh----CcHHHHHHH
Confidence 02222211 111111111 10 0146779999999999999874 358999999
Q ss_pred HHhhcCC-ChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHh
Q 001249 149 FQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (1114)
Q Consensus 149 ~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (1114)
.....|- ++..|+.++++...|++..+-...+|+..++..+..++.|. +..||..+..+++.+++.. .+...+.|..
T Consensus 322 ~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~-~~~vRi~tA~alS~lae~~-~Pygie~fd~ 399 (975)
T COG5181 322 EALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDR-SRFVRIDTANALSYLAELV-GPYGIEQFDE 399 (975)
T ss_pred HHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhcc-ceeeeehhHhHHHHHHHhc-CCcchHHHHH
Confidence 9998876 89999999999999999999888889999999999999997 8999999999999998864 2334455555
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhh
Q 001249 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGT-EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE 306 (1114)
Q Consensus 228 l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~ 306 (1114)
.+..+.+...+ ........-+.+.+.++-. .|+...-+....+..++..... .+++.+...+-+...+.+...
T Consensus 400 vl~pLw~g~~~----hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~s--pdeemkk~~l~v~~~C~~v~~ 473 (975)
T COG5181 400 VLCPLWEGASQ----HRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKS--PDEEMKKDLLVVERICDKVGT 473 (975)
T ss_pred HHHHHHHHHHh----cCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCC--chhhcchhHHHHHHHHhccCC
Confidence 44444333222 1111222222222222111 1222222233444444444432 234433333333322222111
Q ss_pred ccchhhhcchhhHHHHHHHHHHhhcC--CC-CCcccc-------------cCCC------CCccccCCCc-hhhHHHHHH
Q 001249 307 RAPGMMRKLPQFINRLFAILMSMLLD--IE-DDPLWH-------------SAET------EDEDAGESSN-YSVGQECLD 363 (1114)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~--~~-~~~~~~-------------~~~~------~~ed~~~~~~-~~~a~~~l~ 363 (1114)
..|. .+-.++.|.+++..-. .. |-..+- .+.. +.. .|+..+ ++.++.+.+
T Consensus 474 ~tp~------~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~-~De~ep~r~m~a~~vs 546 (975)
T COG5181 474 DTPW------KLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYY-SDEPEPYRKMNAGLVS 546 (975)
T ss_pred CCHH------HHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhc-cCCcchhhhhhhHHHH
Confidence 1110 1123333443332100 00 000000 0000 000 011222 345566666
Q ss_pred HHHHHcCCCcchH----HHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHH
Q 001249 364 RLAIALGGNTIVP----VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (1114)
Q Consensus 364 ~l~~~~~~~~~~~----~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 439 (1114)
+....+|.-.+-+ .++..+...++.++-.+ -..+.+++.+.....-..++|++.|+..+++.|+++.|.||..|+
T Consensus 547 ri~~~lg~~~~dErleerl~d~il~Afqeq~~t~-~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aa 625 (975)
T COG5181 547 RIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV-GLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAA 625 (975)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHHhccccc-cEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHH
Confidence 6666666422222 22222222222221110 011222333332222234589999999999999999999999999
Q ss_pred HHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhH
Q 001249 440 NAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMV 519 (1114)
Q Consensus 440 ~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v 519 (1114)
..++.++..+..--..+.+..+=..|.+.+.. ..++|-.....|+..+....+-..+.|-+..|+|.|...|.+....+
T Consensus 626 dl~~sl~~vlk~c~e~~~l~klg~iLyE~lge-~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv 704 (975)
T COG5181 626 DLMGSLAKVLKACGETKELAKLGNILYENLGE-DYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKV 704 (975)
T ss_pred HHHHHHHHHHHhcchHHHHHHHhHHHHHhcCc-ccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHH
Confidence 99988887664211123344555567788887 78999888888988888777666688999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhh--hhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHH
Q 001249 520 QEGALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1114)
Q Consensus 520 ~~~al~~l~~l~~~~~~~~~--~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~ 597 (1114)
....+..+|.++...++... .+..... -|.+.+... ...+|..|.+++|.|++++|++ +++..+++
T Consensus 705 ~~nti~lvg~I~~~~peyi~~rEWMRIcf-eLvd~Lks~----nKeiRR~A~~tfG~Is~aiGPq-------dvL~~Lln 772 (975)
T COG5181 705 VANTIALVGTICMNSPEYIGVREWMRICF-ELVDSLKSW----NKEIRRNATETFGCISRAIGPQ-------DVLDILLN 772 (975)
T ss_pred hhhHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHHh----hHHHHHhhhhhhhhHHhhcCHH-------HHHHHHHh
Confidence 99999999999988776332 2333222 233333321 3468889999999999999965 34454444
Q ss_pred HhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCce
Q 001249 598 LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKR 677 (1114)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1114)
-... .++-.|....-+++.+++.+|. | .++|.++.--.. |+
T Consensus 773 nLkv---qeRq~RvctsvaI~iVae~cgp----f--sVlP~lm~dY~T-Pe----------------------------- 813 (975)
T COG5181 773 NLKV---QERQQRVCTSVAISIVAEYCGP----F--SVLPTLMSDYET-PE----------------------------- 813 (975)
T ss_pred cchH---HHHHhhhhhhhhhhhhHhhcCc----h--hhHHHHHhcccC-ch-----------------------------
Confidence 1110 1122333333345556565552 2 244544432211 11
Q ss_pred eeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCC
Q 001249 678 IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRN 757 (1114)
Q Consensus 678 ~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~ 757 (1114)
-+|.++. +.+++.+.+..+..-..|+..+.|.+-..+.|. +..-|+.|...+.+|+-.+. ....
T Consensus 814 ~nVQnGv-------Lkam~fmFeyig~~s~dYvy~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~--------gtg~ 877 (975)
T COG5181 814 ANVQNGV-------LKAMCFMFEYIGQASLDYVYSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCP--------GTGD 877 (975)
T ss_pred hHHHHhH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCC--------Cccc
Confidence 0123333 447777778888888889999999988888875 66778888888887764321 1114
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Q 001249 758 ESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNE 794 (1114)
Q Consensus 758 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~ 794 (1114)
.+..-++++.++|.+++ +.+.+.....+++..
T Consensus 878 eda~IHLlNllwpNIle-----~sPhvi~~~~Eg~e~ 909 (975)
T COG5181 878 EDAAIHLLNLLWPNILE-----PSPHVIQSFDEGMES 909 (975)
T ss_pred HHHHHHHHHHhhhhccC-----CCcHHHHHHHHHHHH
Confidence 45667788888886553 445544444444333
No 27
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.7e-13 Score=148.64 Aligned_cols=629 Identities=15% Similarity=0.194 Sum_probs=356.4
Q ss_pred HHHHHHHHHHcCC--ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 22 APFETLISHLMST--SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 22 ~~l~~ll~~~~s~--d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
++++|++.++..| |...|+||.+.+++++. .|..+ ....+++.. ..++.+|..+...|...++.. +..++.
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKs-Sp~aw-~Icie~l~~~ts~d~vkf~clqtL~e~vrek----yne~nl 76 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKS-SPNAW-EICIELLINETSNDLVKFYCLQTLIELVREK----YNEANL 76 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcC-CccHH-HHHHHHHHhhcccchhhhhhHHHHHHHHHHh----hccCCH
Confidence 3688888888765 88999999999999999 68875 677777765 478999999999999999875 556888
Q ss_pred HHHHHHHHHHHHHHhh-----c---hhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCCh-hhHHHHHHHHHH
Q 001249 99 HTQSSLKSMLLQSIQL-----E---SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFAQ 169 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~-----e---~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~-~~r~~al~~l~~ 169 (1114)
..+..+|..++..+.- + ..+-++++++++++.+...++| ..|+.++..++..++-+.. .-.+.-++++-.
T Consensus 77 ~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-~~WnsfF~dlmsv~~~~s~~~~~dfflkvlla 155 (980)
T KOG2021|consen 77 NELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-DCWNSFFDDLMSVFQVDSAISGLDFFLKVLLA 155 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 8899999999887753 2 2455999999999999999998 7899999999887754322 112233334433
Q ss_pred hhhhhhhh------------------hh-hhHHHHHHHHHHhhcCC---CChHHHHHHHHHHHHHHHhcCCcchHhHHHh
Q 001249 170 LSQYIGDT------------------LT-PHLKHLHAVFLNCLTNS---NNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (1114)
Q Consensus 170 l~~~~~~~------------------~~-~~~~~l~~~l~~~l~~~---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (1114)
+-.++.+. ++ ..++.+.....+.+... .++.+--..++|++.++++++ .+...
T Consensus 156 IdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWId----InLIa- 230 (980)
T KOG2021|consen 156 IDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWID----INLIA- 230 (980)
T ss_pred hhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhh----hhhhh-
Confidence 33322110 11 12344444444443311 156777778888888888863 11111
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHH----------------------------------------
Q 001249 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR---------------------------------------- 267 (1114)
Q Consensus 228 l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---------------------------------------- 267 (1114)
=..+++.+...++ -++.|..||.|+.+++...-+-+.
T Consensus 231 -Nd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~g 307 (980)
T KOG2021|consen 231 -NDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFG 307 (980)
T ss_pred -chhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcc
Confidence 0123344444343 356677777777666554321111
Q ss_pred -----------------------HHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH
Q 001249 268 -----------------------RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA 324 (1114)
Q Consensus 268 -----------------------~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 324 (1114)
..+-.+++++++.+.+. .+++-...+.||......-++.+........++.+++-
T Consensus 308 vel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e--~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~ill 385 (980)
T KOG2021|consen 308 VELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNE--FDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILL 385 (980)
T ss_pred eeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHH
Confidence 01112233333333221 22223333333333222111111111111234555666
Q ss_pred HHHHhhcCCCCCcccccCCCCCccccCCCch-hhHHHHHHHHHHHcCCCcchHHHHHHHHHhhC---CCChhHHHHHHHH
Q 001249 325 ILMSMLLDIEDDPLWHSAETEDEDAGESSNY-SVGQECLDRLAIALGGNTIVPVASEQLPAYLA---APEWQKHHAALIA 400 (1114)
Q Consensus 325 ~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~-~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---~~~~~~r~aal~~ 400 (1114)
..++.+++.+.- .|+.+...+|+++..... +--.-.+++++..- |+.++..+-..+...+. ..+|..-+.|+..
T Consensus 386 ai~kqicydemy-~nddn~tg~EeEa~f~e~RkkLk~fqdti~~id-psl~l~~Ir~slS~al~ns~e~swqevE~Aiyl 463 (980)
T KOG2021|consen 386 AIFKQICYDEMY-FNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVID-PSLFLNNIRQSLSAALMNSKEESWQEVELAIYL 463 (980)
T ss_pred HHHHHHhccHHh-hcccCCCCchHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 666666654321 232221122222222222 22222334444322 23344444444444333 3579999999999
Q ss_pred HHHHHhhcHHHHH----------HhHHHHHHHHHh--cCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHh-
Q 001249 401 LAQIAEGCAKVMV----------KNLEQVLSMVLN--SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG- 467 (1114)
Q Consensus 401 l~~l~~~~~~~~~----------~~l~~i~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~- 467 (1114)
+..++|+.+.... ..+..+++.+.. ....+++.|.-.-+..+.++...+..+- .+.+.++...+.
T Consensus 464 ly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~es--q~ip~vL~aFld~ 541 (980)
T KOG2021|consen 464 LYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTES--QKIPLVLNAFLDS 541 (980)
T ss_pred HHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcch--hhhHHHHHHHccc
Confidence 9999997653111 122244444443 3567888888777777877766554432 355555555543
Q ss_pred -hccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCC------------hhHHHHHHHHHHHHHHhh
Q 001249 468 -AMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK------------QMVQEGALTALASVADSS 534 (1114)
Q Consensus 468 -~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~------------~~v~~~al~~l~~l~~~~ 534 (1114)
++.+ .+.+||.+|...+.+|+..+.+. +.||.+.++..+-.+++... ..-+...+.++|.++...
T Consensus 542 rglhn-~ne~Vr~RawYLF~RfVKlLkkq-lvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~ 619 (980)
T KOG2021|consen 542 RGLHN-KNENVRLRAWYLFTRFVKLLKKQ-LVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLN 619 (980)
T ss_pred hhccc-cccccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCC
Confidence 3455 68899999999999999998754 67999999999988884321 112233455555544321
Q ss_pred ---hhhhhhhHhhhhHHHHH-----HHhh-ccCccchhhhH----HHHHHHHHHHHHhch-----------hhhhhhHHH
Q 001249 535 ---QEHFQKYYDAVMPFLKA-----ILVN-ATDKSNRMLRA----KSMECISLVGMAVGK-----------DKFRDDAKQ 590 (1114)
Q Consensus 535 ---~~~~~~~~~~i~~~L~~-----~l~~-~~~~~~~~lr~----~a~~~l~~i~~~~~~-----------~~f~~~~~~ 590 (1114)
.+.-..|.+.++.++.. .... -.+++...... .++-++|.+++.... ..|..
T Consensus 620 n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~---- 695 (980)
T KOG2021|consen 620 NSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSN---- 695 (980)
T ss_pred CCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHH----
Confidence 12222355544432221 1110 01112221111 123334444443220 12222
Q ss_pred HHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccch
Q 001249 591 VMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMET 670 (1114)
Q Consensus 591 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1114)
+.+.++.... .+...+++|..+-.+++++..++|.++-||+|+.++.+++....+
T Consensus 696 ~ldvil~~ls-~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~k------------------------ 750 (980)
T KOG2021|consen 696 ILDVILVTLS-FFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLK------------------------ 750 (980)
T ss_pred HHHHHHHHHh-hccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHH------------------------
Confidence 3333333222 123346789999899999999999999999999999998776321
Q ss_pred hhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhh
Q 001249 671 ITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLV 718 (1114)
Q Consensus 671 ~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~ 718 (1114)
|-..-+-.|+.+....+....|.+.++++.++
T Consensus 751 ----------------Emvdfl~flsQLihkfk~~~~~ilnqmlppll 782 (980)
T KOG2021|consen 751 ----------------EMVDFLGFLSQLIHKFKTDCYQILNQMLPPLL 782 (980)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122346667777667777777777766543
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=6.7e-15 Score=158.96 Aligned_cols=503 Identities=16% Similarity=0.179 Sum_probs=341.1
Q ss_pred HHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCc-hhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhh
Q 001249 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW-PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1114)
Q Consensus 98 ~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w-~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~ 176 (1114)
.++...++...-+.|.+.++..+|+......+.++.+....+.- -.++..+.+.+..+...+++....++..+.-....
T Consensus 50 ~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~ 129 (569)
T KOG1242|consen 50 DQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKG 129 (569)
T ss_pred HHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc
Confidence 45566777888888888888889999988889988876543322 34566667777778888888888887766654433
Q ss_pred hhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHH-HHHHHH
Q 001249 177 TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQ-EALELL 255 (1114)
Q Consensus 177 ~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~-~~~~~l 255 (1114)
. ....+.+.+.+.++.. ...-|..+...+..++... ....+.+. .++..+...+++.....+. .+.-++
T Consensus 130 ~---~~~~~l~~l~~ll~~~-~~~~~~~aa~~~ag~v~g~----~i~~~~~~--~~l~~l~~ai~dk~~~~~re~~~~a~ 199 (569)
T KOG1242|consen 130 L---SGEYVLELLLELLTST-KIAERAGAAYGLAGLVNGL----GIESLKEF--GFLDNLSKAIIDKKSALNREAALLAF 199 (569)
T ss_pred c---CHHHHHHHHHHHhccc-cHHHHhhhhHHHHHHHcCc----HHhhhhhh--hHHHHHHHHhcccchhhcHHHHHHHH
Confidence 2 3445566677777765 7778888888777776543 11222221 4666777777665554433 455556
Q ss_pred HHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCC
Q 001249 256 IELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIED 335 (1114)
Q Consensus 256 ~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 335 (1114)
.......+..+.||+..+++.++...++ ....+|..|.+....+... .+
T Consensus 200 ~~~~~~Lg~~~EPyiv~~lp~il~~~~d--~~~~Vr~Aa~~a~kai~~~---~~-------------------------- 248 (569)
T KOG1242|consen 200 EAAQGNLGPPFEPYIVPILPSILTNFGD--KINKVREAAVEAAKAIMRC---LS-------------------------- 248 (569)
T ss_pred HHHHHhcCCCCCchHHhhHHHHHHHhhc--cchhhhHHHHHHHHHHHHh---cC--------------------------
Confidence 6666666677788888888877776643 4677888877666655542 00
Q ss_pred CcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHh
Q 001249 336 DPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN 415 (1114)
Q Consensus 336 ~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 415 (1114)
.++-+.++|.++..+... .|+.+.+++..+|.+++..++.+...
T Consensus 249 --------------------------------~~aVK~llpsll~~l~~~----kWrtK~aslellg~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 249 --------------------------------AYAVKLLLPSLLGSLLEA----KWRTKMASLELLGAMADCAPKQLSLC 292 (569)
T ss_pred --------------------------------cchhhHhhhhhHHHHHHH----hhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 001134455544443332 79999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHH--HhhhcCC
Q 001249 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL--NFSENCT 493 (1114)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~--~l~~~~~ 493 (1114)
++.++|.+...|.|.+|.||.++..++-++++.... +-...++|.++.++.+ ++.++.+ +...|. .|+..
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN----~dI~~~ip~Lld~l~d-p~~~~~e-~~~~L~~ttFV~~-- 364 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN----PDIQKIIPTLLDALAD-PSCYTPE-CLDSLGATTFVAE-- 364 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHHhcC-cccchHH-HHHhhcceeeeee--
Confidence 999999999999999999999999999999887654 3367899999999999 6644433 223322 12222
Q ss_pred cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh--hhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHH
Q 001249 494 PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS--QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMEC 571 (1114)
Q Consensus 494 ~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~--~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~ 571 (1114)
.-.|-+.-++|.|.+.++..+..+++.+...++.++.-. +..+.||++.++|.+...+.+. . ...|..+..+
T Consensus 365 --V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~-~---PEvR~vaarA 438 (569)
T KOG1242|consen 365 --VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA-V---PEVRAVAARA 438 (569)
T ss_pred --ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC-C---hhHHHHHHHH
Confidence 234778899999999999999999999999999999988 5678999999999999988654 3 4567778889
Q ss_pred HHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccc
Q 001249 572 ISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTI 651 (1114)
Q Consensus 572 l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~ 651 (1114)
++.+.+.+|...|..-.+.+.+.+..-.. +.-+. .+...++..++..-..++..+++.++.....+-.
T Consensus 439 L~~l~e~~g~~~f~d~~p~l~e~~~~~k~------~~~~~---g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~--- 506 (569)
T KOG1242|consen 439 LGALLERLGEVSFDDLIPELSETLTSEKS------LVDRS---GAAQDLSEVLAGLGVEKVEDILPEILANASSVLI--- 506 (569)
T ss_pred HHHHHHHHHhhcccccccHHHHhhccchh------hhhhH---HHhhhHHHHHhcccchHHHHHHHHHHHHHhhccc---
Confidence 99999999877663223333333221110 11122 2334455666655566777888877777643210
Q ss_pred cCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHH
Q 001249 652 TSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRK 731 (1114)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~ 731 (1114)
++ .++.+++. ++.-+-...+..+.||+.++++.+.+.+.+. ++.+|.
T Consensus 507 ---------------~~----------~~~dg~~~-------~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~-de~~~~ 553 (569)
T KOG1242|consen 507 ---------------DE----------RIRDGVIW-------LFYLLPYIFGFQFQPYIHEILDEFLKGLADN-DEKGRD 553 (569)
T ss_pred ---------------hh----------hhccCeee-------hhhccchhhhHHhHHHHHHHHHHHHHHhhhc-CCcccc
Confidence 00 00011110 2222223346678899999999988888753 666666
Q ss_pred HHHHh
Q 001249 732 AAVSA 736 (1114)
Q Consensus 732 ~a~~a 736 (1114)
.+.++
T Consensus 554 ~~~~~ 558 (569)
T KOG1242|consen 554 TALEA 558 (569)
T ss_pred chhhh
Confidence 55544
No 29
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.76 E-value=1.3e-13 Score=153.79 Aligned_cols=543 Identities=14% Similarity=0.139 Sum_probs=304.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC-----C
Q 001249 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-----L 96 (1114)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~-----l 96 (1114)
.....+...+|+|+..++.||+.|+++++ +++ |...|..+..+ ..+-.+|..|.+.+||.+.++ |.. +
T Consensus 5 ~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~-q~g-F~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~----W~~~~~~~i 78 (947)
T COG5657 5 PVVKQLDLAQSPDPPSVKCAEERLRQWEK-QHG-FALKLLSINLSAFNSMSLRWAALIQFKNYIDKH----WREENGNSI 78 (947)
T ss_pred HHHHHHHhhcCCCCchHhhHHHHHHhhhc-ccc-HHHHHHHHHhccccchhHHHHHHHHHHhhHHHH----hhhhcccCC
Confidence 44556677899999999999999999999 666 66888888877 578999999999999999998 753 4
Q ss_pred CHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhh
Q 001249 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1114)
Q Consensus 97 ~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~ 176 (1114)
.++....||..++..+.+ .+..+.-+.+.+++.||+.++| +.||.++|.+...+++.|...-.+.+.++..+.+....
T Consensus 79 ~p~e~v~IR~~l~~lii~-s~n~l~iq~a~avs~IA~~DfP-deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~ 156 (947)
T COG5657 79 LPDENVLIRDELFSLIIS-SSNQLQIQNALAVSRIARLDFP-DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRR 156 (947)
T ss_pred CCccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHHhccCc-ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhh
Confidence 555566999999999987 4666666889999999999999 89999999999999998887778888888888887654
Q ss_pred hh------hhhHHHHHHHHHHhhcCC-CChHHHH-----------HHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHH
Q 001249 177 TL------TPHLKHLHAVFLNCLTNS-NNPDVKI-----------AALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTE 238 (1114)
Q Consensus 177 ~~------~~~~~~l~~~l~~~l~~~-~~~~vr~-----------~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~ 238 (1114)
.+ ....+.+.+++...+... .....+. .+++.+..+... .....++.+.+.++..+..+..
T Consensus 157 l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~-~~qdi~eFfEd~l~~~m~~F~k 235 (947)
T COG5657 157 LFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDL-GFQDIPEFFEDNLDKFMEHFCK 235 (947)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHH
Confidence 32 222333333333333221 1111111 122222222221 1122345566778888777777
Q ss_pred HHhCCCHHHHH-------------HHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCC---cchhHHHHHHHHHHHHH
Q 001249 239 SLNNGNEATAQ-------------EALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES---LEEGTRHLAIEFVITLA 302 (1114)
Q Consensus 239 ~~~~~~~~~~~-------------~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~---~~~~vr~~a~~~l~~l~ 302 (1114)
.+...++..+. ..+..+.-+...++..+.+++-..++.++...+.-. .-+-+...++.++....
T Consensus 236 lls~~~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~ 315 (947)
T COG5657 236 LLSYSNPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVI 315 (947)
T ss_pred HHhhcchhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhh
Confidence 66533333333 245566666667788888877777777776654321 12233344555555554
Q ss_pred Hh--hhccchhhhcchhhHHHHHHHHHHhh--cCCCCCcccccCCCC--Cc---cccCCCchhhHHHHHHHHHHHcCCCc
Q 001249 303 EA--RERAPGMMRKLPQFINRLFAILMSML--LDIEDDPLWHSAETE--DE---DAGESSNYSVGQECLDRLAIALGGNT 373 (1114)
Q Consensus 303 ~~--~~~~~~~~~~~~~~~~~l~~~l~~~l--~~~~~~~~~~~~~~~--~e---d~~~~~~~~~a~~~l~~l~~~~~~~~ 373 (1114)
+. ++..+.......+.+.+++..++..- ...+|-++|..++.+ -| .+-+...+..+...+..+-..+| +-
T Consensus 316 k~~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~~l~~~f~~~~-~i 394 (947)
T COG5657 316 KYPIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIENELKDLFDVFG-RI 394 (947)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHHHHHHHHHHHh-hH
Confidence 41 11111111111223344444433321 122334456543211 00 01122234455666666666666 56
Q ss_pred chHHHHHHHHHhhCCCC---hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCC----ChhHH-HHHHHHHHHh
Q 001249 374 IVPVASEQLPAYLAAPE---WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDP----HPRVR-WAAINAIGQL 445 (1114)
Q Consensus 374 ~~~~l~~~l~~~l~~~~---~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~----~~~vr-~~a~~~l~~l 445 (1114)
+.+++...+.+....++ -..+.-++.++..+....-..+-+..+-.-..+...+-++ +.+++ ..+...+..-
T Consensus 395 ~~~~~~~~ie~~~t~P~~~d~~~~~~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~r 474 (947)
T COG5657 395 AVGHELTVIESEATTPNILDEARQLFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIHLRILRSRIAYILTFR 474 (947)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccCcccCceeEEehhccchheech
Confidence 67777777777766662 1122223333322222211222233333333333344443 23332 2233222211
Q ss_pred Hhhhchh--HHhhhhhhhHHHHHhhccC-CCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC-ChhHHH
Q 001249 446 STDLGPD--LQNQFHPQVLPALAGAMDD-FQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-KQMVQE 521 (1114)
Q Consensus 446 ~~~~~~~--~~~~~~~~il~~l~~~l~~-~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~-~~~v~~ 521 (1114)
....... ..+-+..+.+........| ..--.+|.+....+..+.-.-. ...+-++.++-.+.+...++ +...++
T Consensus 475 ~~l~~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~~~--~~~~~lenl~~lvl~~~as~~~~~e~~ 552 (947)
T COG5657 475 NQLDSSELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFSVC--SKIGLLENLILLVLSLMASPSSLEERE 552 (947)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccc--cccccHHHHHHHHHHhcCCcchhHHHH
Confidence 1111111 0000111112222222222 0112344555554444432221 12244566665556655554 356788
Q ss_pred HHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhcc-CccchhhhHHHHHHHHHHHH
Q 001249 522 GALTALASVADSSQEHFQKYYDAVMPFLKAILVNAT-DKSNRMLRAKSMECISLVGM 577 (1114)
Q Consensus 522 ~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~-~~~~~~lr~~a~~~l~~i~~ 577 (1114)
..+.+++.+....++...|..+.+++.+.+++.... ++....+-...++.++.++.
T Consensus 553 ~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~~ 609 (947)
T COG5657 553 FLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALVF 609 (947)
T ss_pred HHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHH
Confidence 899999999999999999988999999998877532 23222233344555555553
No 30
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=1.3e-13 Score=149.18 Aligned_cols=439 Identities=18% Similarity=0.211 Sum_probs=332.0
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhccc
Q 001249 57 LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNIL 136 (1114)
Q Consensus 57 ~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~ 136 (1114)
++..|++.+. .+.+.+|+....+|..+... ........+...+.+.+.. +...-|..++..++.+.+...
T Consensus 97 ~~~~~~~~~~-tps~~~q~~~~~~l~~~~~~--------~~~~~~~~~l~~l~~ll~~-~~~~~~~~aa~~~ag~v~g~~ 166 (569)
T KOG1242|consen 97 IIEILLEELD-TPSKSVQRAVSTCLPPLVVL--------SKGLSGEYVLELLLELLTS-TKIAERAGAAYGLAGLVNGLG 166 (569)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHhhhHHHH--------hhccCHHHHHHHHHHHhcc-ccHHHHhhhhHHHHHHHcCcH
Confidence 3444444443 56788898888888887643 2233445566667777774 788888888888888877533
Q ss_pred CCC-CchhhHHHHHHhhcCC-ChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 001249 137 PEN-GWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (1114)
Q Consensus 137 ~~~-~w~~ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 214 (1114)
-.. .=..++..+...+++. +...|++++.++...+...+..+.|++..++|.++..+.|. ...||.+|..+...+..
T Consensus 167 i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~-~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 167 IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDK-INKVREAAVEAAKAIMR 245 (569)
T ss_pred HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhcc-chhhhHHHHHHHHHHHH
Confidence 211 2234667777777765 44667788999999999999889999999999999999997 89999999999999998
Q ss_pred hcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHH
Q 001249 215 CLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLA 294 (1114)
Q Consensus 215 ~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a 294 (1114)
.++ ...+..++|..+..+... .+.....+++.++.++++.+..+.-.++++++.+.+.+.+ ...++|.++
T Consensus 246 ~~~----~~aVK~llpsll~~l~~~----kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D--T~~evr~a~ 315 (569)
T KOG1242|consen 246 CLS----AYAVKLLLPSLLGSLLEA----KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD--TKPEVRKAG 315 (569)
T ss_pred hcC----cchhhHhhhhhHHHHHHH----hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc--CCHHHHHHH
Confidence 874 344566777777766642 6777889999999999999999999999999999998864 578999999
Q ss_pred HHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHH-----Hc
Q 001249 295 IEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI-----AL 369 (1114)
Q Consensus 295 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~-----~~ 369 (1114)
.+++..+++.. + .+-+..++|.++.++.++... ..++++.+.. .+
T Consensus 316 ~~~l~~~~svi-------d--N~dI~~~ip~Lld~l~dp~~~---------------------~~e~~~~L~~ttFV~~V 365 (569)
T KOG1242|consen 316 IETLLKFGSVI-------D--NPDIQKIIPTLLDALADPSCY---------------------TPECLDSLGATTFVAEV 365 (569)
T ss_pred HHHHHHHHHhh-------c--cHHHHHHHHHHHHHhcCcccc---------------------hHHHHHhhcceeeeeee
Confidence 99999988841 1 134788899999988765411 1123333321 12
Q ss_pred CCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhc--HHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHh
Q 001249 370 GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC--AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1114)
Q Consensus 370 ~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~--~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1114)
. ..-+..+.|.+.+.+...+-..+..+...++.++.-. +..+.++++.++|.+-..+.|+.|.+|..+.++|+.+.+
T Consensus 366 ~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 366 D-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred c-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 1 2456678888888888777777788888888888766 567889999999999999999999999999999999998
Q ss_pred hhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC--ChhHHHHHHH
Q 001249 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGALT 525 (1114)
Q Consensus 448 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~--~~~v~~~al~ 525 (1114)
..+. .+++...|.+.+.+.+.....-+..+...+...+...+. .++..+++.+....... .+.++...+.
T Consensus 445 ~~g~----~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v----~~~~~~~~~~~a~~~~~~~~~~~~dg~~~ 516 (569)
T KOG1242|consen 445 RLGE----VSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV----EKVEDILPEILANASSVLIDERIRDGVIW 516 (569)
T ss_pred HHHh----hcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccc----hHHHHHHHHHHHHHhhccchhhhccCeee
Confidence 8875 445899999999988734444566677777777766653 45667777776655544 3558888888
Q ss_pred HHHHHHHhhhhhhhhhHhhhhHHHHHHHhh
Q 001249 526 ALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1114)
Q Consensus 526 ~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~ 555 (1114)
.+.-+-...+..+.+|...+++.+.+.+..
T Consensus 517 ~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad 546 (569)
T KOG1242|consen 517 LFYLLPYIFGFQFQPYIHEILDEFLKGLAD 546 (569)
T ss_pred hhhccchhhhHHhHHHHHHHHHHHHHHhhh
Confidence 888777778888999999999998888764
No 31
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.9e-08 Score=111.80 Aligned_cols=843 Identities=15% Similarity=0.194 Sum_probs=420.9
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhch-hhhHHHHHHHHHHHHHhcccCCC--C----
Q 001249 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLES-AKSISKKLCDTVSELASNILPEN--G---- 140 (1114)
Q Consensus 68 ~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~-~~~vr~~~~~~i~~ia~~~~~~~--~---- 140 (1114)
+++|.+|.-|--.|+..=. +...--.+++.+.++. +..+|..++-.+....+..|... .
T Consensus 16 ~pdps~rk~aEr~L~~~e~--------------q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i 81 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLEG--------------QQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKI 81 (960)
T ss_pred CCCCccCchHHHHHHHhcc--------------CCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcccc
Confidence 5678999999998987321 1223345677777643 77788888888877777433211 1
Q ss_pred ---chhhH-HHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhc
Q 001249 141 ---WPELL-PFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1114)
Q Consensus 141 ---w~~ll-~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (1114)
-.+.+ ..++.++-+.....+..-..+++.+.++ +|..-+++++|-+...++.. +-.+-.+.+....++...+
T Consensus 82 ~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~---DFP~kWptLl~dL~~~ls~~-D~~~~~gVL~tahsiFkr~ 157 (960)
T KOG1992|consen 82 IEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKR---DFPDKWPTLLPDLVARLSSG-DFNVINGVLVTAHSIFKRY 157 (960)
T ss_pred chhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcc---ccchhhHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHhc
Confidence 01222 2333444444455555556666666643 24446889999999989876 7776666666666676654
Q ss_pred CCcch----H-------hHHHhhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHc--------cchHHHHHHHHHHHH
Q 001249 217 TSSAD----R-------DRFQDLLPLMMRTLTESLN--NGNEATAQEALELLIELAG--------TEPRFLRRQLVDVVG 275 (1114)
Q Consensus 217 ~~~~~----~-------~~~~~l~p~ll~~l~~~~~--~~~~~~~~~~~~~l~~l~~--------~~~~~~~~~~~~l~~ 275 (1114)
..... + +.|..-+..++.......+ +.+.......+..+.-+++ ..|++|.+|++..++
T Consensus 158 R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~ 237 (960)
T KOG1992|consen 158 RPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMG 237 (960)
T ss_pred CcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHH
Confidence 32111 1 1111111122222222221 2222322223333322222 237899999999999
Q ss_pred HHHHHhcc--C---Ccc------hhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCC
Q 001249 276 SMLQIAEA--E---SLE------EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (1114)
Q Consensus 276 ~ll~~~~~--~---~~~------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 344 (1114)
.+.+.++- + +.+ +.+|...||.+.-.+.. .+ ..+.++++.++......+.....++.++
T Consensus 238 ~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~k---Ye---Eef~~fl~~fv~~~W~LL~~~s~~~kyD---- 307 (960)
T KOG1992|consen 238 AFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATK---YE---EEFQPFLPDFVTATWNLLVSTSPDTKYD---- 307 (960)
T ss_pred HHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHh---hH---HHHHhhHHHHHHHHHHHHHhcCCCccHH----
Confidence 88877641 1 111 23566667766555552 22 2345678887777766666544322110
Q ss_pred CCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHH
Q 001249 345 EDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVL 424 (1114)
Q Consensus 345 ~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~ 424 (1114)
.....++ .++......+.. +.++. -+.++..+.
T Consensus 308 -----------~Lvs~Al-----------------~FLt~V~~r~~y----~~~F~---------------~~~vl~~i~ 340 (960)
T KOG1992|consen 308 -----------YLVSKAL-----------------QFLTSVSRRPHY----AELFE---------------GENVLAQIC 340 (960)
T ss_pred -----------HHHHHHH-----------------HHHHHHHhhhhh----Hhhhc---------------chHHHHHHH
Confidence 0111111 111111111100 00000 011111111
Q ss_pred hcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChh-HHHHHHHHHHHhhhcCCcccccCchHH
Q 001249 425 NSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLNFSENCTPEILTPYLDG 503 (1114)
Q Consensus 425 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~-v~~~a~~al~~l~~~~~~~~l~~~l~~ 503 (1114)
....=+|-..|.. +. +-+-+..+..+-.-++. .+.. -|..||..+..++++.... +.+.+..
T Consensus 341 e~VvlpN~~lR~e--------------De-ElFED~pleYiRRDlEG-sDvdTRRR~a~dlvrgL~~~fe~~-vt~v~~~ 403 (960)
T KOG1992|consen 341 EKVVLPNLILREE--------------DE-ELFEDNPLEYIRRDLEG-SDVDTRRRAAIDLVRGLCKNFEGQ-VTGVFSS 403 (960)
T ss_pred Hhhcccccccchh--------------hH-HHhccCHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHhcch-hHHHHHH
Confidence 1111122112211 00 12233345555555554 3443 3577888999999988543 4566666
Q ss_pred HHHHHHHHh-hc--CChhHHHHHHHHHHHHHHhhhh------------hhhhhH-hhhhHHHHHHHhhccCccchhhhHH
Q 001249 504 IVSKLLVLL-QN--GKQMVQEGALTALASVADSSQE------------HFQKYY-DAVMPFLKAILVNATDKSNRMLRAK 567 (1114)
Q Consensus 504 il~~L~~~l-~~--~~~~v~~~al~~l~~l~~~~~~------------~~~~~~-~~i~~~L~~~l~~~~~~~~~~lr~~ 567 (1114)
.++.++.-. .+ .++.-+..++..+.+++...+. +...|+ ..++|.|.+ .+..+...+|..
T Consensus 404 ~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s----~~vn~~pilka~ 479 (960)
T KOG1992|consen 404 EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLS----PNVNEFPILKAD 479 (960)
T ss_pred HHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhcc----Cccccccchhhc
Confidence 666665532 22 3466677888888888765321 112232 334444433 222334456666
Q ss_pred HHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhc---------cCCccchhhhhHH
Q 001249 568 SMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG---------QDFLPYMSVVMPP 638 (1114)
Q Consensus 568 a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~l~~i~~~ 638 (1114)
++.-+-..-..+|++. +...++.+...... ....+..|+..++..+-.+-+ .++.||+..++..
T Consensus 480 aIKy~~~FR~ql~~~~----lm~~~p~li~~L~a---~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~n 552 (960)
T KOG1992|consen 480 AIKYIYTFRNQLGKEH----LMALLPRLIRFLEA---ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTN 552 (960)
T ss_pred ccceeeeecccCChHH----HHHHHHHHHHhccC---cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHH
Confidence 5555444444455443 33444444442221 123366676666665443322 3477888888888
Q ss_pred HHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhh
Q 001249 639 LLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLV 718 (1114)
Q Consensus 639 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~ 718 (1114)
+++.++.... .++ +--++++-.+.........||.+.++..+.
T Consensus 553 Lf~a~s~p~~---------------~En----------------------eylmKaImRii~i~~~~i~p~~~~~l~~Lt 595 (960)
T KOG1992|consen 553 LFKALSLPGK---------------AEN----------------------EYLMKAIMRIISILQSAIIPHAPELLRQLT 595 (960)
T ss_pred HHHhccCCcc---------------ccc----------------------HHHHHHHHHHHHhCHHhhhhhhhHHHHHHH
Confidence 8888765321 001 111234555555556666677666655544
Q ss_pred hcc----cccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Q 001249 719 PLL----KFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNE 794 (1114)
Q Consensus 719 ~~l----~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~ 794 (1114)
..+ +.+.++.--..-.++++.+++.... .++..+..+...++|.+-..+.+| -.+...-++.-++.
T Consensus 596 eiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~---------~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYvfQlla~ 665 (960)
T KOG1992|consen 596 EIVEEVSKNPSNPQFNHYLFESIGLLIRKTCK---------ANPSAVSSLEEALFPVFQTILSED-IQEFIPYVFQLLAV 665 (960)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHHHhc---------cCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 333 3333444445556666666654321 144456777778888766666543 23444456666777
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhh
Q 001249 795 CIQISGPLLDEGQVRSIVDEIKQVITASS-SRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKA 873 (1114)
Q Consensus 795 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~ 873 (1114)
++...+. -.++.+.+++..+. ...+ ++ ..-+-++..++.++.+..+.
T Consensus 666 lve~~~~-~ip~~~~~l~~~lL---sp~lW~r----------------------------~gNipalvrLl~aflk~g~~ 713 (960)
T KOG1992|consen 666 LVEHSSG-TIPDSYSPLFPPLL---SPNLWKR----------------------------SGNIPALVRLLQAFLKTGSQ 713 (960)
T ss_pred HHHhcCC-CCchhHHHHHHHhc---CHHHHhh----------------------------cCCcHHHHHHHHHHHhcCch
Confidence 7766654 22333444443332 1111 11 11123466777787777665
Q ss_pred chh--hhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhh-hhhhhHhHHHHHHHhccCCC--hhHHhhhhHHHH
Q 001249 874 AFL--PFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA-ALKYYETYLPFLLEACNDEN--QDVRQAAVYGLG 948 (1114)
Q Consensus 874 ~~~--~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~~~~i~~~ll~~l~~~~--~~vr~~a~~~lg 948 (1114)
.+. ..+..++-.+-+++. +... -..++.++..++++.+.. +.||+.++...+++.++++. ..++.-.++-.-
T Consensus 714 ~~~~~~~l~~iLGifqkLia-Ska~--Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~ 790 (960)
T KOG1992|consen 714 IVEAADKLSGILGIFQKLIA-SKAN--DHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSL 790 (960)
T ss_pred hhcccccchhHHHHHHHHhc-Cccc--chhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 553 223334444444442 2221 235778889998888765 46799999999999998864 345555555555
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHhhc----CCCCCC-hhhhhhHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhcCCCC
Q 001249 949 VCAEFGGSVVKPLVGEALSRLNVVIR----HPNALQ-PENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCLPIK 1021 (1114)
Q Consensus 949 ~l~~~~~~~~~~~~~~~l~~L~~~l~----~~~~~~-~~~~~~~~na~~al~~l~~~~~~~~--~~~~~~~~~l~~Lp~~ 1021 (1114)
...++++......+..+-+.+..++. -++... .-...-+..++++.| ++...+... .....++.++..
T Consensus 791 ~~ik~~~~~l~e~~d~IQ~~~fg~l~e~~ii~~l~~i~~~~~rk~~avg~~~-l~~e~~~~~d~~y~~l~~~ll~s---- 865 (960)
T KOG1992|consen 791 FTIKKGGLMLAEVIDGIQPGMFGMLLENFIIPELPKIILRVDRKIMAVGATG-LLTETPELLDQKYAKLWGPLLFS---- 865 (960)
T ss_pred HHHHhhhHHHHHHHhhcchhHHHHHHHHhccccchhhhhhhhHHHHHHHHhh-hhhhcHHhhhHHHHhhhhhHHHH----
Confidence 55566655444444443333333221 111110 001222333444433 433333221 011222222211
Q ss_pred CcHHHHHHHHHHHHHHHhhcCCcccCcCcCc------hhHHHHHHHHHhc-C-CCCCC----HHHHHHHHHHHHHHHhhC
Q 001249 1022 GDLIEAKIVHEQLCSMVERSDSDLLGPNHQY------LPKIVSVFAEILC-G-KDLAT----EQTLSRIVNLLKQLQQTL 1089 (1114)
Q Consensus 1022 ~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~------l~~i~~~~~~~l~-~-~~~~~----~~~~~~~~~~l~~~~~~~ 1089 (1114)
+..+.+......+.....+ .+.....|++.-. + ++.++ .+.++-+.+.+..+.+.-
T Consensus 866 ------------ii~lfe~p~~~~~~~e~~e~~~i~e~~~f~~~F~~L~~a~~k~~Dpl~~i~~~k~y~a~sl~~~~~~~ 933 (960)
T KOG1992|consen 866 ------------IIVLFELPSERTVLDEEEEMAEIEEDPGFQAAFSRLAYAGKKPHDPLAQIKDPKQYLAQSLNKLSTAS 933 (960)
T ss_pred ------------HHHHHhCChhhhccCchhhhhhhhcccchhHHHHHHHcCCCCCCCchhhhhhHHHHHHHHHHHHhhcC
Confidence 1111110000000000000 1112223333222 1 21111 236777778888888888
Q ss_pred ChhhHHHHHhc-CCHHHHHHHHhhh
Q 001249 1090 PPATLASTWSS-LQPQQQLALQSIL 1113 (1114)
Q Consensus 1090 ~~~~~~~~~~~-l~~~~~~~l~~~~ 1113 (1114)
|+. +-+.++. ||+|.|..||+++
T Consensus 934 ~g~-~~~~i~~~l~~e~q~~Lq~~~ 957 (960)
T KOG1992|consen 934 PGR-FPQTISTSLPPENQTYLQSYL 957 (960)
T ss_pred CCC-chhhhcccCCHHHHHHHHHHh
Confidence 887 7777765 9999999999986
No 32
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=9.2e-09 Score=119.43 Aligned_cols=786 Identities=14% Similarity=0.130 Sum_probs=387.6
Q ss_pred HHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHccchHHHHHH--HHHHHHHHHHHh
Q 001249 206 LNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN--NGNEATAQEALELLIELAGTEPRFLRRQ--LVDVVGSMLQIA 281 (1114)
Q Consensus 206 ~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~l~~~ll~~~ 281 (1114)
+.+|..++.+.+.+ .+..-++.+++.+..++. +.+..++..++.||..+.......-..+ ..+.+..++...
T Consensus 72 ~~LL~li~~~VPs~----vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~ 147 (1176)
T KOG1248|consen 72 AYLLVLILKYVPSP----VLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFA 147 (1176)
T ss_pred HHHHHHHHhhCCHH----HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHH
Confidence 56666667766432 333344455555555554 6677889999999988876432222111 112222222222
Q ss_pred ccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHH
Q 001249 282 EAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQEC 361 (1114)
Q Consensus 282 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~ 361 (1114)
. +..+.+|..|...+..+.......| ....|....+...++..+...--. . +..+..+ ....
T Consensus 148 ~--h~~pkvRk~a~~~i~~VL~~p~~~~---~~~HpA~~~vak~cl~~~e~~~~~---------a---~~t~v~~-~L~L 209 (1176)
T KOG1248|consen 148 A--HKKPKVRKAAQRGIAAVLKGPPFAP---DAEHPASLSVAKFCLALIESKLGS---------A---ENTTVLR-SLML 209 (1176)
T ss_pred h--cCchHHHHHHHHHHHHHHcCCCCCc---cccchHHHHHHHHHHHHHHhhhch---------H---HHHHHHH-HHHH
Confidence 1 3468899999999998887421111 112233333444444433221100 0 0000000 1112
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHH-hHHHHHHHHHhcCC---CCChhHHHH
Q 001249 362 LDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVK-NLEQVLSMVLNSFR---DPHPRVRWA 437 (1114)
Q Consensus 362 l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~-~l~~i~~~l~~~l~---d~~~~vr~~ 437 (1114)
|..+...++ ...+..+-..+.......+-.++..++.++..+....+..... ....++..+..+-- |.-..+-+.
T Consensus 210 l~~~~~~~p-~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~ 288 (1176)
T KOG1248|consen 210 LRDVLSTFP-RPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWL 288 (1176)
T ss_pred HHHhhccCC-HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHH
Confidence 222222233 3444445455555555667788888999998888765542222 22345555544432 322222222
Q ss_pred HH--HHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHH-HHHHhhc
Q 001249 438 AI--NAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK-LLVLLQN 514 (1114)
Q Consensus 438 a~--~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~-L~~~l~~ 514 (1114)
.. .+...++. .+++......+.+++..+..+.. ..+.+-..+...+..+...+.. +.+.+... +..+++-
T Consensus 289 ~v~~~~~~~la~-~q~~~~~~~~~~~~~~~~t~~~s-~~~e~~q~a~q~l~~il~~sv~-----~~~~~c~~~~~~~l~~ 361 (1176)
T KOG1248|consen 289 KVLNEAHDILAT-LQEEKALQALPRLFSLFFTILES-LIEELVQAASQSLKEILKESVT-----VIDALCSKQLHSLLDY 361 (1176)
T ss_pred HHHHHHHHHHHH-hCHHHHHHhhhhhhhHHHHHHhc-ccHHHHHHHHHHHHHHhcccCc-----ccHHHHHHHHHHHHcc
Confidence 11 11111221 22322235678888888887766 7777778888888888766542 45556655 5666666
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhH------
Q 001249 515 GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA------ 588 (1114)
Q Consensus 515 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~------ 588 (1114)
....+-..++.++..+.+.+|+...||+-..+..|...=.. ++..-+...=+|+|...+++|++.+...+
T Consensus 362 kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~----~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~ 437 (1176)
T KOG1248|consen 362 KFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRAS----PDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHA 437 (1176)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcC----CCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccc
Confidence 66778888999999999999998888887776666553211 12223345567999999999987654321
Q ss_pred -------HHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCC----ccchhh-hhHHHHHh-ccCCCCccccCCC
Q 001249 589 -------KQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDF----LPYMSV-VMPPLLQS-AQLKPDVTITSAD 655 (1114)
Q Consensus 589 -------~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~l~~-i~~~ll~~-~~~~~~~~~~~~~ 655 (1114)
.++++++...... .. + .+..+.+--++..+...+ .+-.+. ++..+... +..=|++-...-|
T Consensus 438 ~s~~~~RsWLLPvLR~~i~~----A~-L-a~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~D 511 (1176)
T KOG1248|consen 438 ESLSFTRSWLLPVLRDYIIG----AS-L-AFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVD 511 (1176)
T ss_pred cccccchhHhHHHHHHhhcc----Cc-H-HHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCcc
Confidence 2233333331110 00 0 011111111222211100 000111 22211111 1111211100000
Q ss_pred CcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhccccc--CCHHHHHHH
Q 001249 656 SDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY--FHEEVRKAA 733 (1114)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~--~~~~vr~~a 733 (1114)
-.+.+...- .-..-.+.... +.|..-|..|..++...... ++. ..+-+-..|
T Consensus 512 --------l~~sF~~la-~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~----------------~~a~e~~e~~s~~A 565 (1176)
T KOG1248|consen 512 --------LAESFTDLA-PILGAALLKRP-ELRETICNSLRMLVEQNKPS----------------SDAAENKEVLSNDA 565 (1176)
T ss_pred --------HHHHHHHHH-HHHHHHHhcch-HhHHHHHHHHHHHHHcCCCc----------------chHHHHHHHHhhhh
Confidence 000000000 00000000000 12222233333333221000 000 011122223
Q ss_pred HHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH-HHHccCCcHHHHHHHHH-------------------HHH
Q 001249 734 VSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALV-EALHKEPDTEICASMLD-------------------SLN 793 (1114)
Q Consensus 734 ~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~-------------------~l~ 793 (1114)
-..|+.++..+.... ..+. +........+.... ..+ +....+++..... ++-
T Consensus 566 knfL~~lfn~ytq~~----~~~~---~~l~~~~~~L~~i~~~~~-~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slL 637 (1176)
T KOG1248|consen 566 KNFLPRLFNVYTQTV----AAGR---KILASRSTVLEIIRVDYF-TVTPTDVVGSLKDSAGELASDLDESVASFKTLSLL 637 (1176)
T ss_pred hHHHHHHHHHhcCCC----cccc---ccHHHHHHHHHHHHHHHh-hcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHH
Confidence 333443333221100 0010 01111111111111 111 1112222222222 222
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHH-hh
Q 001249 794 ECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKT-FK 872 (1114)
Q Consensus 794 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~-~~ 872 (1114)
+++..+++..+.+.+..++ .+..-.. ......+...+.++|..++.. .+
T Consensus 638 dl~~~~a~~~~e~~vs~l~-~v~~~~e-----------------------------~~~~~~vQkK~yrlL~~l~~~~s~ 687 (1176)
T KOG1248|consen 638 DLLIALAPVQTESQVSKLF-TVDPEFE-----------------------------NSSSTKVQKKAYRLLEELSSSPSG 687 (1176)
T ss_pred HHHHhhhccccchhHHHHH-HhhHHhh-----------------------------ccccHHHHHHHHHHHHHHhcCCch
Confidence 3333333333333333332 1110000 011233455567777777765 11
Q ss_pred hch-hhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCCChhHHhhhhHHHHHHH
Q 001249 873 AAF-LPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCA 951 (1114)
Q Consensus 873 ~~~-~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~ 951 (1114)
..+ ..++..+...+.+-.+ +.....+..++.++..+++.++.....+++..+|-++=.+++.+...|++|+.||-.++
T Consensus 688 ~~~~~q~i~~I~n~L~ds~q-s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 688 EGLVEQRIDDIFNSLLDSFQ-SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIG 766 (1176)
T ss_pred hhHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHH
Confidence 122 2334445555554442 33455688889999999999986666677777777766678899999999999888877
Q ss_pred --hhcCC----CchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCC---CHhhHHHHHHhcCCCCC
Q 001249 952 --EFGGS----VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI---DAAQVVPAWLNCLPIKG 1022 (1114)
Q Consensus 952 --~~~~~----~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~---~~~~~~~~~l~~Lp~~~ 1022 (1114)
....+ .....+.+.+..|...+.... ....+++ +-++++++.....-+ .+..++..+...|- .+
T Consensus 767 ~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~----~~~~as~--Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~-s~ 839 (1176)
T KOG1248|consen 767 AIQSSLDDGNEPASAILNEFLSIISAGLVGDS----TRVVASD--IVAITHILQEFKNILDDETLEKLISMVCLYLA-SN 839 (1176)
T ss_pred HHHhhhcccccchHHHHHHHHHHHHhhhcccH----HHHHHHH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHh-cC
Confidence 22221 112245555555555544321 1122222 778888887765544 36677777766664 24
Q ss_pred cHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCC
Q 001249 1023 DLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQ 1102 (1114)
Q Consensus 1023 d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 1102 (1114)
..+-+..+++++..++..-+...+.+ |++++++.+...+. + .+...+.++..++..+...|+-+.+++ -+|
T Consensus 840 sreI~kaAI~fikvlv~~~pe~~l~~---~~~~LL~sll~ls~-d--~k~~~r~Kvr~LlekLirkfg~~eLe~---~~p 910 (1176)
T KOG1248|consen 840 SREIAKAAIGFIKVLVYKFPEECLSP---HLEELLPSLLALSH-D--HKIKVRKKVRLLLEKLIRKFGAEELES---FLP 910 (1176)
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHhh---hHHHHHHHHHHHHH-h--hhHHHHHHHHHHHHHHHHHhCHHHHHh---hCH
Confidence 46677888888888887666666665 88999988877552 1 256788899999999999988443444 455
Q ss_pred HHHHHHHHhh
Q 001249 1103 PQQQLALQSI 1112 (1114)
Q Consensus 1103 ~~~~~~l~~~ 1112 (1114)
.+.+..|+.+
T Consensus 911 ee~~klL~nI 920 (1176)
T KOG1248|consen 911 EEDMKLLTNI 920 (1176)
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 33
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=8.9e-09 Score=119.57 Aligned_cols=748 Identities=13% Similarity=0.140 Sum_probs=370.8
Q ss_pred HHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcc-
Q 001249 58 TLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNI- 135 (1114)
Q Consensus 58 ~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~- 135 (1114)
...|..++.. +.+..+++.+.-+|..++...+-..|. ....+..+...+.-.+- ..+.+|..+.+.+..+...-
T Consensus 95 ~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~--~~~t~~~~~~il~~~~h--~~pkvRk~a~~~i~~VL~~p~ 170 (1176)
T KOG1248|consen 95 LNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWS--YSSTKTELFGILAFAAH--KKPKVRKAAQRGIAAVLKGPP 170 (1176)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhc--cccHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHcCCC
Confidence 3455555543 678889999999999999887777798 44556666554443333 47788888877777765520
Q ss_pred -cCCC----------------------------------------Cchh-hHHH----HHHhhcCCChhhHHHHHHHHHH
Q 001249 136 -LPEN----------------------------------------GWPE-LLPF----MFQCVSSDSVKLQESAFLIFAQ 169 (1114)
Q Consensus 136 -~~~~----------------------------------------~w~~-ll~~----l~~~~~~~~~~~r~~al~~l~~ 169 (1114)
.|.. .||. ++.. ++..+...+..++..++.++..
T Consensus 171 ~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~ 250 (1176)
T KOG1248|consen 171 FAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHS 250 (1176)
T ss_pred CCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 0111 1321 1111 1112222333344444444444
Q ss_pred hhhhhhhhhhh-hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHH
Q 001249 170 LSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATA 248 (1114)
Q Consensus 170 l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~ 248 (1114)
++...+..+.. ....++..+...--+..+..+-.+-++++......+. ...++.-..-+|.++..++.+..+..++..
T Consensus 251 lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la-~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~ 329 (1176)
T KOG1248|consen 251 LFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILA-TLQEEKALQALPRLFSLFFTILESLIEELV 329 (1176)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHH-HhCHHHHHHhhhhhhhHHHHHHhcccHHHH
Confidence 44433332221 1112222222111111122222333333333222221 112333344566777777777777777777
Q ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001249 249 QEALELLIELAGTEPRFLRRQLVDVVGSML-QIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1114)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll-~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1114)
..+-+++.++...... +.+.++...+ ..+..+ ...+-..++.++..+.+. .. +...+++.+.+..+.
T Consensus 330 q~a~q~l~~il~~sv~----~~~~~c~~~~~~~l~~k--f~~~~~~ilqi~s~~fek---~G---~~s~~~l~~~L~~l~ 397 (1176)
T KOG1248|consen 330 QAASQSLKEILKESVT----VIDALCSKQLHSLLDYK--FHAVWRFILQILSALFEK---CG---ELSGPELTKTLEGLC 397 (1176)
T ss_pred HHHHHHHHHHhcccCc----ccHHHHHHHHHHHHcch--HHHHHHHHHHHHHHHHHH---hh---hhcCHHHHHHHHHHH
Confidence 7888888777765554 2222332211 111111 112223445555555542 11 112223333332222
Q ss_pred HhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 001249 328 SMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEG 407 (1114)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 407 (1114)
. |...+ +......-.+|++.-..++||+.++. ++|+=. . .+..-..|-=-+=.|..-+.+
T Consensus 398 ~----------lr~~~-------d~~~~~~ld~~IGSAV~AmGPe~vL~-~lpLnl-~-~~s~~~~RsWLLPvLR~~i~~ 457 (1176)
T KOG1248|consen 398 D----------LRASP-------DFFHKLQLDQCIGSAVRAMGPERVLT-ILPLNL-H-AESLSFTRSWLLPVLRDYIIG 457 (1176)
T ss_pred H----------hhcCC-------CCccHHHHHHHHHHHHHhhCHHHHHH-Hcchhc-c-ccccccchhHhHHHHHHhhcc
Confidence 1 11111 01111234567777777777654333 222111 0 111100110001111111111
Q ss_pred cH-HHHHHhHHHHHHHHHh---cCCCCChhH--HHH-HHH---HHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhH
Q 001249 408 CA-KVMVKNLEQVLSMVLN---SFRDPHPRV--RWA-AIN---AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 477 (1114)
Q Consensus 408 ~~-~~~~~~l~~i~~~l~~---~l~d~~~~v--r~~-a~~---~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v 477 (1114)
.+ .++.+++-.+...+.. .+.+....+ -+. ... .|-.||+. +-+. ...+..+.+.+...+.. .+..
T Consensus 458 A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~-P~Dl-~~sF~~la~~l~~al~~--~~el 533 (1176)
T KOG1248|consen 458 ASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNY-PVDL-AESFTDLAPILGAALLK--RPEL 533 (1176)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCC-CccH-HHHHHHHHHHHHHHHhc--chHh
Confidence 11 1222222222222211 122222222 111 111 12233332 2233 34477888999988886 5699
Q ss_pred HHHHHHHHHHhhhcCC--------cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh-hhhhhhHhhhhHH
Q 001249 478 QAHAASAVLNFSENCT--------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ-EHFQKYYDAVMPF 548 (1114)
Q Consensus 478 ~~~a~~al~~l~~~~~--------~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~i~~~ 548 (1114)
|...|.+|..+++... .+.+..|-.+.++.++..-......-+ ..+........... ..|..-...+...
T Consensus 534 r~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~~ 612 (1176)
T KOG1248|consen 534 RETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDVVGS 612 (1176)
T ss_pred HHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 9999999999998751 135567788889999987765544333 33333333333322 2222222223333
Q ss_pred HHHHHhhccC-cc---chhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHh
Q 001249 549 LKAILVNATD-KS---NRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCL 624 (1114)
Q Consensus 549 L~~~l~~~~~-~~---~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 624 (1114)
|...++.... .+ ........++-+..++..........+. .+.+... + .++..++.-+...+..++..-
T Consensus 613 l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e---~---~~~~~vQkK~yrlL~~l~~~~ 685 (1176)
T KOG1248|consen 613 LKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFE---N---SSSTKVQKKAYRLLEELSSSP 685 (1176)
T ss_pred HHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhh---c---cccHHHHHHHHHHHHHHhcCC
Confidence 3333322111 10 1111222233332333222211111111 1222111 1 112234555555555555440
Q ss_pred -cc-CCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHh
Q 001249 625 -GQ-DFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADEL 702 (1114)
Q Consensus 625 -~~-~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~ 702 (1114)
|. -...++..+...+.+.++.-+ -..+..++.+|..+.+.+
T Consensus 686 s~~~~~~q~i~~I~n~L~ds~qs~~-------------------------------------~~~~~~rl~~L~~L~~~~ 728 (1176)
T KOG1248|consen 686 SGEGLVEQRIDDIFNSLLDSFQSSS-------------------------------------SPAQASRLKCLKRLLKLL 728 (1176)
T ss_pred chhhHHHHHHHHHHHHHHHHHhccc-------------------------------------hHHHHHHHHHHHHHHHhc
Confidence 11 122334444444444442211 123566788999999988
Q ss_pred hhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcH
Q 001249 703 KEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDT 782 (1114)
Q Consensus 703 ~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 782 (1114)
+..+..++++.++.++=.++ ..|..-|+.|..+|-.+.. ....... |.++ ....++.+++.+...+..+. .
T Consensus 729 ~~e~~~~i~k~I~EvIL~~K-e~n~~aR~~Af~lL~~i~~-i~~~~d~----g~e~--~~~~lnefl~~Isagl~gd~-~ 799 (1176)
T KOG1248|consen 729 SAEHCDLIPKLIPEVILSLK-EVNVKARRNAFALLVFIGA-IQSSLDD----GNEP--ASAILNEFLSIISAGLVGDS-T 799 (1176)
T ss_pred cHHHHHHHHHHHHHHHHhcc-cccHHHHhhHHHHHHHHHH-HHhhhcc----cccc--hHHHHHHHHHHHHhhhcccH-H
Confidence 87777788888887666665 4689999999999888874 1111111 2222 23445555555555544432 2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHH
Q 001249 783 EICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGE 862 (1114)
Q Consensus 783 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~ 862 (1114)
.++..-+-++..++...+..++.+.+..+++.+...|.+. .++++.++..
T Consensus 800 ~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~------------------------------sreI~kaAI~ 849 (1176)
T KOG1248|consen 800 RVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN------------------------------SREIAKAAIG 849 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC------------------------------CHHHHHHHHH
Confidence 2333338888888888887788777777777665555432 2456777889
Q ss_pred HHHHHHHHhhhc-hhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhh-hhhHhHHHHHHHh
Q 001249 863 ILGTLIKTFKAA-FLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAAL-KYYETYLPFLLEA 931 (1114)
Q Consensus 863 ~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~-~~~~~i~~~ll~~ 931 (1114)
.+..++..++.. ..+|.+.++|.++..+ ++.+...|.-.-.++..+++.+|.... +|++...--++..
T Consensus 850 fikvlv~~~pe~~l~~~~~~LL~sll~ls-~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~n 919 (1176)
T KOG1248|consen 850 FIKVLVYKFPEECLSPHLEELLPSLLALS-HDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTN 919 (1176)
T ss_pred HHHHHHHcCCHHHHhhhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHH
Confidence 999999999965 5788999999998866 455667788788899999999887543 3665444444443
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=2.2e-12 Score=136.08 Aligned_cols=412 Identities=16% Similarity=0.165 Sum_probs=293.1
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHccchHHH
Q 001249 188 VFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR-TLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1114)
Q Consensus 188 ~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~-~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 266 (1114)
.+.++++|. ..+-|++|..-+-.++..+-...+.+ .+..+++ .......+++...|++++..+...+-..+..-
T Consensus 4 ~i~r~ltdK-lYekRKaaalelEk~Vk~l~~~~~~~----~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~ 78 (675)
T KOG0212|consen 4 SIARGLTDK-LYEKRKAAALELEKLVKDLVNNNDYD----QIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKD 78 (675)
T ss_pred HhhhhhhhH-HHHHHHHHHHHHHHHHHHHHccCcHH----HHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcccc
Confidence 345677776 77888888888887777653322322 3445555 33345556666677777766665544444444
Q ss_pred HHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCC
Q 001249 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETED 346 (1114)
Q Consensus 267 ~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 346 (1114)
.+|+..+++..+.+.++ .+..+|..|++.+..+++..+ .....|.+.++..+.+...+.+.
T Consensus 79 ~~Y~~~iv~Pv~~cf~D--~d~~vRyyACEsLYNiaKv~k------~~v~~~Fn~iFdvL~klsaDsd~----------- 139 (675)
T KOG0212|consen 79 AGYLEKIVPPVLNCFSD--QDSQVRYYACESLYNIAKVAK------GEVLVYFNEIFDVLCKLSADSDQ----------- 139 (675)
T ss_pred HHHHHHhhHHHHHhccC--ccceeeeHhHHHHHHHHHHhc------cCcccchHHHHHHHHHHhcCCcc-----------
Confidence 55888999988888864 478899999999999998521 23445778888888777655421
Q ss_pred ccccCCCchhhHHHHHHHHHHHcCCC----cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHH
Q 001249 347 EDAGESSNYSVGQECLDRLAIALGGN----TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSM 422 (1114)
Q Consensus 347 ed~~~~~~~~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~ 422 (1114)
..+-+++.++++.+..-.+ --++.++|.+.+.+...++..|...+.++..+-...+-.+..|++.+++.
T Consensus 140 -------~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldG 212 (675)
T KOG0212|consen 140 -------NVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDG 212 (675)
T ss_pred -------ccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHH
Confidence 1234677888887655322 24788999999999999999999999999988877776788999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchH
Q 001249 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD 502 (1114)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~ 502 (1114)
+++.|+|+++.||..+-.+++.+.......-..-..++..+.+...+.+ +++.+|..|...+..|+...+.. +.+|+.
T Consensus 213 Lf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s-s~~~iq~~al~Wi~efV~i~g~~-~l~~~s 290 (675)
T KOG0212|consen 213 LFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS-SEPEIQLKALTWIQEFVKIPGRD-LLLYLS 290 (675)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC-CcHHHHHHHHHHHHHHhcCCCcc-hhhhhh
Confidence 9999999999999999999999887765432111467899999999999 89999999999999999887755 669999
Q ss_pred HHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHhhhhhhhh---hHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHH
Q 001249 503 GIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQK---YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1114)
Q Consensus 503 ~il~~L~~~l~~~~~-~v~~~al~~l~~l~~~~~~~~~~---~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1114)
.++..+++++.+... .+++.+...-+.+...++..... -+..++..+...+... ....|..+++.+..+-..
T Consensus 291 ~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~----~~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 291 GILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD----REETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc----hHHHHHHHHHHHHHHHhh
Confidence 999999999988766 47776666665555554433221 3456778887777542 345677888888888877
Q ss_pred hchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhc
Q 001249 579 VGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSA 643 (1114)
Q Consensus 579 ~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~ 643 (1114)
.+ ..+..+..++...++.-.. +.+|.+...++..++.+|.. .-.+++-+.+..+++..
T Consensus 367 ~p-~ql~~h~~~if~tLL~tLs---d~sd~vvl~~L~lla~i~~s---~~~~~~~~fl~sLL~~f 424 (675)
T KOG0212|consen 367 AP-GQLLVHNDSIFLTLLKTLS---DRSDEVVLLALSLLASICSS---SNSPNLRKFLLSLLEMF 424 (675)
T ss_pred Cc-chhhhhccHHHHHHHHhhc---CchhHHHHHHHHHHHHHhcC---cccccHHHHHHHHHHHH
Confidence 77 4566777888877776443 23455555555555555544 33334444445555554
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.58 E-value=5.5e-10 Score=130.51 Aligned_cols=470 Identities=12% Similarity=0.123 Sum_probs=294.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc-c--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001249 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ-R--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1114)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~-~--~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~ 99 (1114)
-+..++..+.++|-+.|+-..-.+..+.+.+|+.. ...++-+. + +.++.+|-+|...|-++- .++
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela-lLaINtl~KDl~d~Np~IRaLALRtLs~Ir-----------~~~ 136 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA-LLAVNTFLQDTTNSSPVVRALAVRTMMCIR-----------VSS 136 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-----------cHH
Confidence 45566777888888899999988888877678743 22333333 2 678899998887777643 245
Q ss_pred HHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC-CchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhh
Q 001249 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN-GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1114)
Q Consensus 100 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~-~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1114)
..+.+-..+.+++.+ +++-||++++-++.++.+.. |.- .-.++++.+..++.++++.+...|+.+|..+.+..+..+
T Consensus 137 i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 137 VLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 566666777777776 79999999999999987743 211 112456777788889999999999999999987665443
Q ss_pred hhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001249 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1114)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l 258 (1114)
. .....+..++..+.+- ++=.+...++++.. +.+. +.... -.+++.+...+++.++.+...+++++..+
T Consensus 215 ~-l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~---y~P~--~~~e~----~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 215 E-SSNEWVNRLVYHLPEC-NEWGQLYILELLAA---QRPS--DKESA----ETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred H-HHHHHHHHHHHHhhcC-ChHHHHHHHHHHHh---cCCC--CcHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 2 2233344455555554 44455566666633 2211 11111 24566666667788899999999999888
Q ss_pred Hccc-hHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 001249 259 AGTE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (1114)
Q Consensus 259 ~~~~-~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 337 (1114)
.... +..+...+..+...++.+. ..+.+++..++..+..++.. .|.. +..-+...+.. ..|
T Consensus 284 ~~~~~~~~~~~~~~rl~~pLv~L~---ss~~eiqyvaLr~I~~i~~~---~P~l-------f~~~~~~Ff~~---~~D-- 345 (746)
T PTZ00429 284 ASRCSQELIERCTVRVNTALLTLS---RRDAETQYIVCKNIHALLVI---FPNL-------LRTNLDSFYVR---YSD-- 345 (746)
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhh---CCCccHHHHHHHHHHHHHHH---CHHH-------HHHHHHhhhcc---cCC--
Confidence 7543 3334444444445555543 23578899999888777762 3322 22212222111 111
Q ss_pred ccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001249 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1114)
Q Consensus 338 ~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 417 (1114)
..+ +....|+.+..... +.-+..++.-+.++..+.+...+..++.++|.++...+. ...
T Consensus 346 ---------------p~y-IK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a~ 404 (746)
T PTZ00429 346 ---------------PPF-VKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VAP 404 (746)
T ss_pred ---------------cHH-HHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HHH
Confidence 112 34455666655554 455666777788888888999999999999999987654 344
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhc--cCCCChhHHHHHHHHHHHhhhcCCcc
Q 001249 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM--DDFQNPRVQAHAASAVLNFSENCTPE 495 (1114)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l--~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1114)
.++..++..+.+....+ ..+...+..+.+..+. . .+++.++..+ .+-.++..+.+.+|.|+.+++...
T Consensus 405 ~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~----~---~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~-- 474 (746)
T PTZ00429 405 DCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPE----L---LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE-- 474 (746)
T ss_pred HHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCcc----H---HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh--
Confidence 55566666665544433 3456666666554432 1 1455555433 222467888999999999887543
Q ss_pred cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHH
Q 001249 496 ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLV 575 (1114)
Q Consensus 496 ~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i 575 (1114)
..+.++..++.-+...+..||-..+.+...+.-..+++..+ .+..++..... +.++..+|-||..-+..+
T Consensus 475 ----~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~----~l~~vL~~~t~--~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 475 ----NGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEP----QLNRVLETVTT--HSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred ----hHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHHHHh--cCCChhHHHHHHHHHHHH
Confidence 13456666666666677889988888888777665543322 23333332222 223457888887766555
Q ss_pred H
Q 001249 576 G 576 (1114)
Q Consensus 576 ~ 576 (1114)
.
T Consensus 545 s 545 (746)
T PTZ00429 545 S 545 (746)
T ss_pred c
Confidence 3
No 36
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=7.2e-12 Score=132.23 Aligned_cols=394 Identities=15% Similarity=0.169 Sum_probs=282.0
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCc---hhhHHHHH-HhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHH
Q 001249 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGW---PELLPFMF-QCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK 183 (1114)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w---~~ll~~l~-~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 183 (1114)
+.++|.+ .-.+-|+.++.-+..+++....++.. ..++..+. ....+++.+.|.+++..+....-..+..-..+..
T Consensus 5 i~r~ltd-KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 5 IARGLTD-KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHH
Confidence 4455665 67777888889999998866555533 34455333 3445778888889999999888777776666999
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch
Q 001249 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1114)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 263 (1114)
.+++.+..+++|+ +..||..|+..+.+++.... ..+...++.+..+++....+.+..++ .+.+.+..+.....
T Consensus 84 ~iv~Pv~~cf~D~-d~~vRyyACEsLYNiaKv~k-----~~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIV 156 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQ-DSQVRYYACESLYNIAKVAK-----GEVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIV 156 (675)
T ss_pred HhhHHHHHhccCc-cceeeeHhHHHHHHHHHHhc-----cCcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhc
Confidence 9999999999997 99999999999999998753 22344566777788877766665554 44455555443211
Q ss_pred H--HHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccc
Q 001249 264 R--FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS 341 (1114)
Q Consensus 264 ~--~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 341 (1114)
. .-.-+++.+++.+-..+.. .+..+|...++++..+-. .|. .++-.|++.+++.|+++|.+..++
T Consensus 157 te~~~tFsL~~~ipLL~eriy~--~n~~tR~flv~Wl~~Lds----~P~--~~m~~yl~~~ldGLf~~LsD~s~e----- 223 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIYV--INPMTRQFLVSWLYVLDS----VPD--LEMISYLPSLLDGLFNMLSDSSDE----- 223 (675)
T ss_pred cccccccCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhc----CCc--HHHHhcchHHHHHHHHHhcCCcHH-----
Confidence 0 0023466777766655533 467789888887776655 343 245578999999999998765321
Q ss_pred CCCCCccccCCCchhhHHHHHHHHHHHcCCC--c-chHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHH
Q 001249 342 AETEDEDAGESSNYSVGQECLDRLAIALGGN--T-IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ 418 (1114)
Q Consensus 342 ~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~--~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~ 418 (1114)
.+.....+++.+-....++ . -.+.+++.+...++++++..+..|+.++..++.-.+...-.++..
T Consensus 224 ------------Vr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~ 291 (675)
T KOG0212|consen 224 ------------VRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSG 291 (675)
T ss_pred ------------HHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhh
Confidence 2334444444433322111 1 123345555566788899999999999999998888777789999
Q ss_pred HHHHHHhcCCCCCh-hHHHHHHHHHHHhHhhhchhHHh--hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc
Q 001249 419 VLSMVLNSFRDPHP-RVRWAAINAIGQLSTDLGPDLQN--QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1114)
Q Consensus 419 i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~--~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1114)
++..+++++.|..+ .++..+...-+.+...+...... --+..++..+.+.+.+ .....|.++...+..+....+.+
T Consensus 292 il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~q 370 (675)
T KOG0212|consen 292 ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPGQ 370 (675)
T ss_pred hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcch
Confidence 99999999999877 47877776665555544432211 1245899999999998 77888999999998888888766
Q ss_pred cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001249 496 ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1114)
Q Consensus 496 ~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~ 536 (1114)
+.-+.+++.+.|++.+.+++..|-..++..++.+|.....
T Consensus 371 -l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 371 -LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred -hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 5689999999999999999999999999999999876543
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.56 E-value=5.1e-11 Score=141.28 Aligned_cols=510 Identities=17% Similarity=0.227 Sum_probs=332.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhhhc--CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001249 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQ--DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1114)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~--~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~ 99 (1114)
+++..+++... .+...++.+-+.+-.+... +.+......+..+. +.+...|+++-..+......+ ++
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~---------~~ 75 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHED---------PE 75 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTS---------HH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcc---------hh
Confidence 35555555544 4666677776665543321 23322233333333 889999999999999987654 66
Q ss_pred HHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhh
Q 001249 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1114)
Q Consensus 100 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 179 (1114)
..-.+-+.+.+-|.+ +++.+|..+-.+++.+... .-.+.+++.+.+++.++++.+|..|+.++..+....++.+.
T Consensus 76 ~~~l~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~~----~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 76 LLILIINSLQKDLNS-PNPYIRGLALRTLSNIRTP----EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp HHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHH-SH----HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHHHHHHHhhcC-CCHHHHHHHHhhhhhhccc----chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH
Confidence 566677778888886 6899999888888887643 34588899999999999999999999999999988777543
Q ss_pred hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001249 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1114)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~ 259 (1114)
.. +++.+.+.+.|. ++.|+.+|+.++..+ .. ..+.+..+++.+.+.+.+.+...++-.+...++++..++
T Consensus 151 ~~---~~~~l~~lL~d~-~~~V~~~a~~~l~~i-~~-----~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 151 DE---LIPKLKQLLSDK-DPSVVSAALSLLSEI-KC-----NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp GG---HHHHHHHHTTHS-SHHHHHHHHHHHHHH-HC-----THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred HH---HHHHHhhhccCC-cchhHHHHHHHHHHH-cc-----CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 32 677888888887 899999999999888 22 223333677888888888778888988888899988877
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccc
Q 001249 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 339 (1114)
Q Consensus 260 ~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 339 (1114)
...+..-.. ..+++.+...+. +.+..++..++.++..+.. ..+.+..+++.+...+...+
T Consensus 221 ~~~~~~~~~--~~~i~~l~~~l~--s~~~~V~~e~~~~i~~l~~-----------~~~~~~~~~~~L~~lL~s~~----- 280 (526)
T PF01602_consen 221 PMEPEDADK--NRIIEPLLNLLQ--SSSPSVVYEAIRLIIKLSP-----------SPELLQKAINPLIKLLSSSD----- 280 (526)
T ss_dssp SSSHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHSS-----------SHHHHHHHHHHHHHHHTSSS-----
T ss_pred cCChhhhhH--HHHHHHHHHHhh--ccccHHHHHHHHHHHHhhc-----------chHHHHhhHHHHHHHhhccc-----
Confidence 665554421 234444444333 2356677777766665443 12356777888887776321
Q ss_pred ccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHH
Q 001249 340 HSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (1114)
Q Consensus 340 ~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i 419 (1114)
...+..+.+++..++...+ ..+. .....+.....+++...|..++..+..++.. .....+
T Consensus 281 ------------~nvr~~~L~~L~~l~~~~~-~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~------~n~~~I 340 (526)
T PF01602_consen 281 ------------PNVRYIALDSLSQLAQSNP-PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE------SNVKEI 340 (526)
T ss_dssp ------------HHHHHHHHHHHHHHCCHCH-HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H------HHHHHH
T ss_pred ------------chhehhHHHHHHHhhcccc-hhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc------cchhhH
Confidence 1133455566666654431 1222 1112222333478899999999999988864 455667
Q ss_pred HHHHHhcCCCC-ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc
Q 001249 420 LSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1114)
Q Consensus 420 ~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~ 498 (1114)
++.+.+.+.+. ++.+|..+..+++.++....+.. +.+++.+++.+.. ....+...+...+..++...+.
T Consensus 341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~-----~~~v~~l~~ll~~-~~~~~~~~~~~~i~~ll~~~~~---- 410 (526)
T PF01602_consen 341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA-----EWYVDTLLKLLEI-SGDYVSNEIINVIRDLLSNNPE---- 410 (526)
T ss_dssp HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH-----HHHHHHHHHHHHC-TGGGCHCHHHHHHHHHHHHSTT----
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH-----HHHHHHHHHhhhh-ccccccchHHHHHHHHhhcChh----
Confidence 77777777444 77799999999999998875543 4556666666666 5567777888888888876542
Q ss_pred CchHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHH
Q 001249 499 PYLDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1114)
Q Consensus 499 ~~l~~il~~L~~~l~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1114)
....++..+...+.+ ..+.++..+++.+|..+..... .. ....++..+...+. .+...+|..++.++..+..
T Consensus 411 -~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~~~~~~~l~~~~~----~~~~~vk~~ilt~~~Kl~~ 483 (526)
T PF01602_consen 411 -LREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SAPDILRSLIENFI----EESPEVKLQILTALAKLFK 483 (526)
T ss_dssp -THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HHHHHHHHHHHHHT----TSHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cHHHHHHHHHHhhc----cccHHHHHHHHHHHHHHHh
Confidence 134567777777775 4577888999999988776654 01 23334444444432 2345678888888888876
Q ss_pred HhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHH
Q 001249 578 AVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWA 618 (1114)
Q Consensus 578 ~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 618 (1114)
..+..... +.+++.+....... +.+-.++..+...+.
T Consensus 484 ~~~~~~~~---~~i~~~~~~~~~~~-s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 484 RNPENEVQ---NEILQFLLSLATED-SSDPEVRDRAREYLR 520 (526)
T ss_dssp HSCSTTHH---HHHHHHHHCHHHHS--SSHHHHHHHHHHHH
T ss_pred hCCchhhH---HHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 65532222 24555554433300 113346766665544
No 38
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.52 E-value=7.1e-11 Score=140.10 Aligned_cols=451 Identities=18% Similarity=0.224 Sum_probs=289.6
Q ss_pred HhCCCh-HHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc---CCCHHHHHHHHHHHHHhcccCCCC
Q 001249 16 ILGPDS-APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSF 91 (1114)
Q Consensus 16 ~~~~~~-~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~---~~~~~~R~~A~~~Lk~~l~~~~~~ 91 (1114)
.+|.|. ..+..+++.+.|.|...++-+.-.+..+...+|+.. ....+.+.. ++++.+|.+|...|-+..
T Consensus 35 ~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~-~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~------ 107 (526)
T PF01602_consen 35 MLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL-ILIINSLQKDLNSPNPYIRGLALRTLSNIR------ 107 (526)
T ss_dssp HTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH-HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-------
T ss_pred HcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc------
Confidence 345543 356667777788999999999999999887677743 334444442 788999999999999864
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchh-hHHHHHHhhcCCChhhHHHHHHHHHHh
Q 001249 92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE-LLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1114)
Q Consensus 92 ~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~-ll~~l~~~~~~~~~~~r~~al~~l~~l 170 (1114)
+++..+.+...+.+.+.+ +++.||++++.++..+.+. .| +..+. +++.+.+.+.++++.++..|+.++..+
T Consensus 108 -----~~~~~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~-~p-~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 108 -----TPEMAEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRK-DP-DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp -----SHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHH-CH-CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred -----ccchhhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhcc-CH-HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 367777888888888887 7899999999999999885 33 34444 799999999999999999999999988
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcc-----------------------------h
Q 001249 171 SQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA-----------------------------D 221 (1114)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-----------------------------~ 221 (1114)
+.-++......+.++..+.+.+... ++-.+...++.+..+........ .
T Consensus 180 -~~~~~~~~~~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 180 -KCNDDSYKSLIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIK 257 (526)
T ss_dssp -HCTHHHHTTHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCcchhhhhHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 2211111122333333333333333 33333333333322211100000 0
Q ss_pred HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 001249 222 RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1114)
Q Consensus 222 ~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l 301 (1114)
......++..+++.+...+.+.++.++..++..+..++...+..+. +....+. ++ . .+.+..+|..+++.+..+
T Consensus 258 l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~-~l---~-~~~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 258 LSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILF-FL---L-YDDDPSIRKKALDLLYKL 331 (526)
T ss_dssp HSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHH-HH---H-CSSSHHHHHHHHHHHHHH
T ss_pred hhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhhh-ee---c-CCCChhHHHHHHHHHhhc
Confidence 0000013345566666667777888888888888888877744443 2222221 11 1 234678888899988888
Q ss_pred HHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHH
Q 001249 302 AEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQ 381 (1114)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~ 381 (1114)
+.. .-+..+++.+..++.+..+ ......+...+..++..++ ......++.
T Consensus 332 ~~~------------~n~~~Il~eL~~~l~~~~d----------------~~~~~~~i~~I~~la~~~~--~~~~~~v~~ 381 (526)
T PF01602_consen 332 ANE------------SNVKEILDELLKYLSELSD----------------PDFRRELIKAIGDLAEKFP--PDAEWYVDT 381 (526)
T ss_dssp --H------------HHHHHHHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHG--SSHHHHHHH
T ss_pred ccc------------cchhhHHHHHHHHHHhccc----------------hhhhhhHHHHHHHHHhccC--chHHHHHHH
Confidence 873 1234466666666532211 1133456667777777774 345566667
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCC-CChhHHHHHHHHHHHhHhhhchhHHhhhhhh
Q 001249 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1114)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 460 (1114)
+.+.+...+...+..+...+..+....++.. ..++..+...+.+ .++.++.+++|++|++++.... . . ....
T Consensus 382 l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~----~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~-~-~~~~ 454 (526)
T PF01602_consen 382 LLKLLEISGDYVSNEIINVIRDLLSNNPELR----EKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-T-E-SAPD 454 (526)
T ss_dssp HHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH----HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-T-T-HHHH
T ss_pred HHHhhhhccccccchHHHHHHHHhhcChhhh----HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-c-c-cHHH
Confidence 7777776666777777777777776554322 2344444555444 6788999999999999987754 1 1 4667
Q ss_pred hHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhh--cCChhHHHHHHHHHHHH
Q 001249 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ--NGKQMVQEGALTALASV 530 (1114)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~--~~~~~v~~~al~~l~~l 530 (1114)
++..+.+...+ .++.+|..+..++..+....+... ..+.+++.+.+... +.+.++|..|...+.-+
T Consensus 455 ~~~~l~~~~~~-~~~~vk~~ilt~~~Kl~~~~~~~~---~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 455 ILRSLIENFIE-ESPEVKLQILTALAKLFKRNPENE---VQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHSCSTT---HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhCCchh---hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 78888888777 678899999999999887765321 24577788888777 78999999998876654
No 39
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.5e-10 Score=122.10 Aligned_cols=464 Identities=17% Similarity=0.201 Sum_probs=286.4
Q ss_pred HHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhh--chh
Q 001249 40 SEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL--ESA 117 (1114)
Q Consensus 40 ~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~--e~~ 117 (1114)
.+|..+|.+|++ .++.+ ...-+++....+.....+|+..+|+++... +..+++.+...+|+.++..+.. +..
T Consensus 2 ~~A~~~L~~FQ~-S~~aW-~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~----F~~Lp~~~~~slrdsl~thl~~l~~~~ 75 (559)
T KOG2081|consen 2 EKANNWLGNFQK-SNDAW-QICEEILSQKCDVEALLFAAQTLRNKIQYD----FSELPPLTHASLRDSLITHLKELHDHP 75 (559)
T ss_pred chHhHHHHHhCC-ChHHH-HHHHHHHcccchHHHHHHHHHHHHHHHHhh----HHhcCcchhHHHHHHHHHHHHHHHhCC
Confidence 468889999998 56654 667788877778899999999999999987 8888888888888877666553 233
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhh---------------hhhhhH
Q 001249 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD---------------TLTPHL 182 (1114)
Q Consensus 118 ~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~---------------~~~~~~ 182 (1114)
+.+|.+++-+++.++-+. + .|.+-++.+++...+..+. .-.-+.+|..+.++..+ .+....
T Consensus 76 ~~i~tQL~vavA~Lal~~-~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~ 151 (559)
T KOG2081|consen 76 DVIRTQLAVAVAALALHM-P--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQV 151 (559)
T ss_pred chHHHHHHHHHHHHHHHh-H--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhH
Confidence 488999999999998764 3 7988777787777766655 23455666666665321 122334
Q ss_pred HHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHHhcCCcchHhHHHhh--------------------------------
Q 001249 183 KHLHAVFLNCLTNS--NNPDVKIAALNAVINFIQCLTSSADRDRFQDL-------------------------------- 228 (1114)
Q Consensus 183 ~~l~~~l~~~l~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l-------------------------------- 228 (1114)
..++..+..+++.. ++..+-..++++++++...-.- ..+.+...
T Consensus 152 ~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~--~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~ 229 (559)
T KOG2081|consen 152 SKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVF--PPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSL 229 (559)
T ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccC--CHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhh
Confidence 45555666666544 1245566677777766552100 00111000
Q ss_pred --------------HHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHccchHHHHHH---HHHHHHHHHHHhccCCcchhH
Q 001249 229 --------------LPLMMRTLTESL-NNGNEATAQEALELLIELAGTEPRFLRRQ---LVDVVGSMLQIAEAESLEEGT 290 (1114)
Q Consensus 229 --------------~p~ll~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~l~~~ll~~~~~~~~~~~v 290 (1114)
-+.+++..+... ...+.+.....+++|.++++.+...+... .-.+++.++-..+. .+.++
T Consensus 230 ~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h--~~~ev 307 (559)
T KOG2081|consen 230 DRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGH--NDTEV 307 (559)
T ss_pred hhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccC--Cchhh
Confidence 011122222211 23355666666777777776654444321 22344444444443 45688
Q ss_pred HHHHHHHHHHHHHhh--hccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCc-hhhHHHHHHHHHH
Q 001249 291 RHLAIEFVITLAEAR--ERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSN-YSVGQECLDRLAI 367 (1114)
Q Consensus 291 r~~a~~~l~~l~~~~--~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~-~~~a~~~l~~l~~ 367 (1114)
-...+.+|..+.+.- .+.......+.++..+++..+......+.+.+.- -|++++.-. +....+.+.-++.
T Consensus 308 ie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l------~Ee~~~f~~fR~~v~dvl~Dv~~ 381 (559)
T KOG2081|consen 308 IEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDL------PEEESEFFEFRLKVGDVLKDVAF 381 (559)
T ss_pred hhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccC------ccchhHHHHHHHHHHHHHHHHHH
Confidence 889999999988741 1222333345688888998888887765421100 111111111 2235566677777
Q ss_pred HcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHh
Q 001249 368 ALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1114)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1114)
.+|++..+..+...+.+ .++.|..-+|+++.+..++...+..-.+.++.++..+.+.=.. ..+|+.++..+|.+.+
T Consensus 382 iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~Q--~~~~~ts~ll~g~~~e 457 (559)
T KOG2081|consen 382 IIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPEQ--APLRYTSILLLGEYSE 457 (559)
T ss_pred HhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCccc--hhHHHHHHHHHHHHHH
Confidence 78877777766655554 5678999999999999999987755556677777777655332 2399999999999999
Q ss_pred hhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc--cccCchHHHHHHHHHHhhcCChhHHHHHHH
Q 001249 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE--ILTPYLDGIVSKLLVLLQNGKQMVQEGALT 525 (1114)
Q Consensus 448 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~--~l~~~l~~il~~L~~~l~~~~~~v~~~al~ 525 (1114)
++...- .....++..+...+.. . +...++..++..++..+... .+.|++..+...+....-+ ....- .+.
T Consensus 458 w~~~~p--~~le~v~~~~~~~~~~-~--~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~--~e~a~-l~~ 529 (559)
T KOG2081|consen 458 WVEQHP--ELLEPVLRYIRQGLQL-K--RLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQIN--EEAAC-LLQ 529 (559)
T ss_pred HHHhCc--HHHHHHHHHHHHHhhh-c--chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--HHHHH-HHH
Confidence 986542 4566777777777776 2 26666667777777665432 1223444444444333322 22222 444
Q ss_pred HHHHHHHhhh
Q 001249 526 ALASVADSSQ 535 (1114)
Q Consensus 526 ~l~~l~~~~~ 535 (1114)
.++.++...+
T Consensus 530 ~~s~i~~~lp 539 (559)
T KOG2081|consen 530 GISLIISNLP 539 (559)
T ss_pred HHHHHHhcCC
Confidence 4555554444
No 40
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=9e-12 Score=134.48 Aligned_cols=363 Identities=17% Similarity=0.219 Sum_probs=250.5
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhhhhhh-hhhhh-hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchH
Q 001249 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-DTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1114)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1114)
.+.+.+.+.+.+...+..+...+..+..... +.+.. ....++|.+..+|....++.++..|..++.+++..-+.....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 4555566667777667777777666654322 11111 223678899999975447999999999999999864321111
Q ss_pred hHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH--HHHHHHHHHhccCCcchhHHHHHHHHHHH
Q 001249 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (1114)
Q Consensus 223 ~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~ll~~~~~~~~~~~vr~~a~~~l~~ 300 (1114)
-.-...+|. +..++.+++.+++..++++|+.++...+ .++.++- .++..++..+.... .......+..++..
T Consensus 148 vv~agavp~----fi~Ll~s~~~~v~eQavWALgNIagds~-~~Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW~LsN 221 (514)
T KOG0166|consen 148 VVDAGAVPI----FIQLLSSPSADVREQAVWALGNIAGDSP-DCRDYVLSCGALDPLLRLLNKSD-KLSMLRNATWTLSN 221 (514)
T ss_pred cccCCchHH----HHHHhcCCcHHHHHHHHHHHhccccCCh-HHHHHHHhhcchHHHHHHhcccc-chHHHHHHHHHHHH
Confidence 011233444 4455678999999999999999987553 4455443 45666666665432 23566677788888
Q ss_pred HHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHH
Q 001249 301 LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASE 380 (1114)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~ 380 (1114)
+|+.+. |. + + -..+..++|
T Consensus 222 lcrgk~--P~-----P-------------------------------------~-----------------~~~v~~iLp 240 (514)
T KOG0166|consen 222 LCRGKN--PS-----P-------------------------------------P-----------------FDVVAPILP 240 (514)
T ss_pred HHcCCC--CC-----C-------------------------------------c-----------------HHHHHHHHH
Confidence 887421 10 0 0 012233556
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh
Q 001249 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1114)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1114)
.+...+.+.|..+..-|+++++.++.+..+.+.-.++ .++|.+...|..+++.|+..|+.++|.++.......+.-.-.
T Consensus 241 ~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~ 320 (514)
T KOG0166|consen 241 ALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINS 320 (514)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhc
Confidence 6666777888888888999999999998876665554 588999999999999999999999999887654444333456
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCch-HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhh
Q 001249 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF 538 (1114)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l-~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~ 538 (1114)
..+|.+...+...+...++..||+++++++..... .+...+ ..++|.|+.++++....+|+.|..+|+.++.....+-
T Consensus 321 ~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~-qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~q 399 (514)
T KOG0166|consen 321 GALPVLSNLLSSSPKESIKKEACWTISNITAGNQE-QIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQ 399 (514)
T ss_pred ChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH-HHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHH
Confidence 78899998888536667999999999999885442 222222 3678999999999999999999999999987766666
Q ss_pred hhhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHh
Q 001249 539 QKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV 579 (1114)
Q Consensus 539 ~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~ 579 (1114)
.+|+ ..+++.+...|. ..+ . .+-..+++++..+-...
T Consensus 400 i~yLv~~giI~plcdlL~-~~D--~-~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 400 IKYLVEQGIIKPLCDLLT-CPD--V-KIILVALDGLENILKVG 438 (514)
T ss_pred HHHHHHcCCchhhhhccc-CCC--h-HHHHHHHHHHHHHHHHH
Confidence 6666 348888888873 222 2 22445677777766543
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=99.44 E-value=3.9e-08 Score=115.26 Aligned_cols=386 Identities=13% Similarity=0.104 Sum_probs=251.0
Q ss_pred hHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCC
Q 001249 119 SISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNN 198 (1114)
Q Consensus 119 ~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 198 (1114)
..+..+-.+|+.+... .....+++.++.++++++...|..+...+....+.-++. .--.++.|.+-++++ +
T Consensus 48 ~kk~alKkvIa~mt~G----~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel----alLaINtl~KDl~d~-N 118 (746)
T PTZ00429 48 RKKAAVKRIIANMTMG----RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK----ALLAVNTFLQDTTNS-S 118 (746)
T ss_pred HHHHHHHHHHHHHHCC----CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH----HHHHHHHHHHHcCCC-C
Confidence 3455555666665542 355778999999999999999988877777665544332 334566777888887 9
Q ss_pred hHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Q 001249 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSML 278 (1114)
Q Consensus 199 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll 278 (1114)
+.+|-.|+++++.+-. ..+++.++..+.+++.+.++-+|+.|.-++..+....++.+.. ..+++.+.
T Consensus 119 p~IRaLALRtLs~Ir~-----------~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~~~~L~ 185 (746)
T PTZ00429 119 PVVRALAVRTMMCIRV-----------SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDFKKDLV 185 (746)
T ss_pred HHHHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cchHHHHH
Confidence 9999999998876432 2455677778888888999999999999999988777655421 11222233
Q ss_pred HHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhH
Q 001249 279 QIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVG 358 (1114)
Q Consensus 279 ~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a 358 (1114)
..+. +.+..|...|+..+..+.+. .|... ......+..++..+.+. .+| ..
T Consensus 186 ~LL~--D~dp~Vv~nAl~aL~eI~~~---~~~~l----~l~~~~~~~Ll~~L~e~---~EW----------------~Q- 236 (746)
T PTZ00429 186 ELLN--DNNPVVASNAAAIVCEVNDY---GSEKI----ESSNEWVNRLVYHLPEC---NEW----------------GQ- 236 (746)
T ss_pred HHhc--CCCccHHHHHHHHHHHHHHh---Cchhh----HHHHHHHHHHHHHhhcC---ChH----------------HH-
Confidence 3333 45788899999999888773 33211 12233333344433221 123 21
Q ss_pred HHHHHHHHHHcCC-CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHH
Q 001249 359 QECLDRLAIALGG-NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRW 436 (1114)
Q Consensus 359 ~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~ 436 (1114)
..+|+.+....+. +.-...++..+...+++.+.-+..+|+.++-.+...+. +.+...+..+.+.++.. ...++.+|.
T Consensus 237 i~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqy 315 (746)
T PTZ00429 237 LYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQY 315 (746)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHH
Confidence 2456666554332 12234566777777888899999999998888876543 33333344444555544 456789999
Q ss_pred HHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCC
Q 001249 437 AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 516 (1114)
Q Consensus 437 ~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~ 516 (1114)
.++..+..+....+.-+ ..-+..++-..+| +. .|+......|..++..- ....|+..|.....+.+
T Consensus 316 vaLr~I~~i~~~~P~lf-----~~~~~~Ff~~~~D-p~-yIK~~KLeIL~~Lane~-------Nv~~IL~EL~eYa~d~D 381 (746)
T PTZ00429 316 IVCKNIHALLVIFPNLL-----RTNLDSFYVRYSD-PP-FVKLEKLRLLLKLVTPS-------VAPEILKELAEYASGVD 381 (746)
T ss_pred HHHHHHHHHHHHCHHHH-----HHHHHhhhcccCC-cH-HHHHHHHHHHHHHcCcc-------cHHHHHHHHHHHhhcCC
Confidence 99999988877554333 2224555556677 44 58888888877776432 25677888888888889
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHh
Q 001249 517 QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV 579 (1114)
Q Consensus 517 ~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~ 579 (1114)
..++..++.++|.++...+. ..+.++..|.+++... .+ +...++..+..+.+..
T Consensus 382 ~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~--~~---~v~e~i~vik~Ilrky 435 (746)
T PTZ00429 382 MVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRR--PE---LLPQVVTAAKDIVRKY 435 (746)
T ss_pred HHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCC--ch---hHHHHHHHHHHHHHHC
Confidence 99999999999999976554 4556667777776431 11 2234455555554433
No 42
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.42 E-value=9.3e-10 Score=126.80 Aligned_cols=564 Identities=15% Similarity=0.170 Sum_probs=360.0
Q ss_pred hhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCC
Q 001249 117 AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS 196 (1114)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 196 (1114)
+-.-|.....-+..++........-.+++|++-+.. ..+..+...+..-++.+..+.+.. .+...+.+.+.....+.
T Consensus 95 di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~--~~~~~ll~~le~l~~~e 171 (759)
T KOG0211|consen 95 DIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGP--EYAHMLLPPLELLATVE 171 (759)
T ss_pred hhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccch--hHHHHhhHHHHhhhHHH
Confidence 444556666667777766555445678999999998 666667777777777777664432 24455666666666665
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch-HHHHHHHHHHHH
Q 001249 197 NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-RFLRRQLVDVVG 275 (1114)
Q Consensus 197 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~ 275 (1114)
...+|..++..+...+...+.. .....++| .+.......-...|..++.++.......+ ..++..+..++
T Consensus 172 -et~vr~k~ve~l~~v~~~~~~~---~~~~~lv~----l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~- 242 (759)
T KOG0211|consen 172 -ETGVREKAVESLLKVAVGLPKE---KLREHLVP----LLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIV- 242 (759)
T ss_pred -HHHHHHHHHHHHHHHHHhcChH---HHHHHHHH----HHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHH-
Confidence 6788999999999998876532 11223333 22222222222346677777777665555 44444444443
Q ss_pred HHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhH-HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCc
Q 001249 276 SMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI-NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSN 354 (1114)
Q Consensus 276 ~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~ 354 (1114)
.+++. +....+|..+..-++.+++. .+. ... ..++|...+...+ +.++.
T Consensus 243 --~~lc~--d~~~~Vr~~~a~~l~~~a~~---~~~------~~~~s~v~~~~~~L~~D-----------------dqdsV 292 (759)
T KOG0211|consen 243 --QSLCQ--DDTPMVRRAVASNLGNIAKV---LES------EIVKSEVLPTLIQLLRD-----------------DQDSV 292 (759)
T ss_pred --Hhhcc--ccchhhHHHHHhhhHHHHHH---HHH------HHHHhhccHHHhhhhhc-----------------chhhH
Confidence 34443 45677888877777777663 111 111 2223333222211 13346
Q ss_pred hhhHHHHHHHHHHHcCCC-cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChh
Q 001249 355 YSVGQECLDRLAIALGGN-TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPR 433 (1114)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 433 (1114)
+.+|...+..+...+..+ .....+.+.+.+...+.+|++|+.....+..+....+. ...-....+.....++|....
T Consensus 293 r~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e 370 (759)
T KOG0211|consen 293 REAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWE 370 (759)
T ss_pred HHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhh
Confidence 667888888888777655 56666777778888899999999887777766654433 223345678888899999999
Q ss_pred HHHHHHHHHHHhHhhhchhH-HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh
Q 001249 434 VRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (1114)
Q Consensus 434 vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l 512 (1114)
+|.+...-...++..+.... ..-..+.++|.+.....| .+..||.+.+..+..+....+.+ .-+..+.+.+...+
T Consensus 371 ~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d-~~~~vr~a~a~~~~~~~p~~~k~---~ti~~llp~~~~~l 446 (759)
T KOG0211|consen 371 VRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD-NALHVRSALASVITGLSPILPKE---RTISELLPLLIGNL 446 (759)
T ss_pred hhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc-ccchHHHHHhccccccCccCCcC---cCccccChhhhhhc
Confidence 99999988888887765211 012355678988888888 88999988887777666665532 33555667777788
Q ss_pred hcCChhHHHHHHHHHHHHHHhhh-hhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHH
Q 001249 513 QNGKQMVQEGALTALASVADSSQ-EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (1114)
Q Consensus 513 ~~~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i 591 (1114)
++..+.||...+..+..+-...+ ....-+-+..+|.+...-. +..+..|...++.+..++...|.+.|.+...++
T Consensus 447 ~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~----d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l 522 (759)
T KOG0211|consen 447 KDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAE----DLLWRVRLAILEYIPQLALQLGVEFFDEKLAEL 522 (759)
T ss_pred chhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhcc----chhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHH
Confidence 88889999888877754443332 1334466677777666532 225667888888888888877754444432222
Q ss_pred HHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchh
Q 001249 592 MEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETI 671 (1114)
Q Consensus 592 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1114)
+ ..... +....++..+...+..++..+|. .-+...++|.++.....+
T Consensus 523 ~---~~~l~---d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~q~------------------------- 569 (759)
T KOG0211|consen 523 L---RTWLP---DHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDLQD------------------------- 569 (759)
T ss_pred H---Hhhhh---hhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhcCc-------------------------
Confidence 1 11111 11245888999999999999993 334455666666554210
Q ss_pred hcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcC
Q 001249 672 TLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKG 751 (1114)
Q Consensus 672 ~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~ 751 (1114)
.+. .|.+.+.++..++..+|..+ +.+++++.+..+..|. .++||-.+++.+..+......
T Consensus 570 -----~y~-------~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~----- 629 (759)
T KOG0211|consen 570 -----NYL-------VRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDP-VANVRINVAKHLPKILKLLDE----- 629 (759)
T ss_pred -----ccc-------hhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCC-chhhhhhHHHHHHHHHhhcch-----
Confidence 011 23444557778888877654 3566777777777764 889999999999988775421
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001249 752 LAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECI 796 (1114)
Q Consensus 752 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l 796 (1114)
...+..+-++.+.+.++++.+++..+..++..+.
T Consensus 630 -----------~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 630 -----------SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred -----------HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 2223334445667777888888877777766553
No 43
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=5.2e-10 Score=121.10 Aligned_cols=352 Identities=16% Similarity=0.184 Sum_probs=249.9
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC---Cchhh
Q 001249 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPEL 144 (1114)
Q Consensus 68 ~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~---~w~~l 144 (1114)
+.+++.+..|..-+|++++... -+.+..-.+..+...+.+.|....++.++-.++-++..||+...... .-...
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~---~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~aga 153 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKER---NPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGA 153 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCC---CCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCc
Confidence 5566778888888999888751 13455666677888888888765678999999999999998654322 12467
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhH--HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchH
Q 001249 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1114)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1114)
+|.+++++.+++..+++-|.-+|+.++.+.+. ++.++ ..+++.++..+...........+..++.++...-......
T Consensus 154 vp~fi~Ll~s~~~~v~eQavWALgNIagds~~-~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~ 232 (514)
T KOG0166|consen 154 VPIFIQLLSSPSADVREQAVWALGNIAGDSPD-CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPF 232 (514)
T ss_pred hHHHHHHhcCCcHHHHHHHHHHHhccccCChH-HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcH
Confidence 89999999999999999999999999977543 33322 2244555555665423367778999999999875321122
Q ss_pred hHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 001249 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1114)
Q Consensus 223 ~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l 301 (1114)
+ .+..++.++..++.+.|+++...+++++..+.....+.+.-.+. .+++.+..+++.. +..++..|+..++.+
T Consensus 233 ~----~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~--~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 233 D----VVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS--SPKVVTPALRAIGNI 306 (514)
T ss_pred H----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC--CcccccHHHhhccce
Confidence 2 33456667777788899999999999999999877777665544 5666666666543 455666676666655
Q ss_pred HHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHH
Q 001249 302 AEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQ 381 (1114)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~ 381 (1114)
+...+ . .....+ . .. ++|.
T Consensus 307 vtG~d----------~---------------------------------------QTq~vi-----~---~~----~L~~ 325 (514)
T KOG0166|consen 307 VTGSD----------E---------------------------------------QTQVVI-----N---SG----ALPV 325 (514)
T ss_pred eeccH----------H---------------------------------------HHHHHH-----h---cC----hHHH
Confidence 44100 0 000000 0 12 2334
Q ss_pred HHHhhC-CCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh--
Q 001249 382 LPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-- 457 (1114)
Q Consensus 382 l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-- 457 (1114)
+...+. ++.-+.|..|++.++.|..|..+.+...++ .++|.++..++..+-.+|..|+|+++.++....++- ..|
T Consensus 326 l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~q-i~yLv 404 (514)
T KOG0166|consen 326 LSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQ-IKYLV 404 (514)
T ss_pred HHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHH-HHHHH
Confidence 444454 556668999999999999999887776665 589999999999999999999999999987655433 233
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC
Q 001249 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1114)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1114)
...+++.++..|.- ++.++...+..++.++....
T Consensus 405 ~~giI~plcdlL~~-~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 405 EQGIIKPLCDLLTC-PDVKIILVALDGLENILKVG 438 (514)
T ss_pred HcCCchhhhhcccC-CChHHHHHHHHHHHHHHHHH
Confidence 45688999999976 77777788888888887654
No 44
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.32 E-value=1.1e-08 Score=118.28 Aligned_cols=498 Identities=13% Similarity=0.107 Sum_probs=314.1
Q ss_pred HccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhh
Q 001249 65 LQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPEL 144 (1114)
Q Consensus 65 l~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~l 144 (1114)
+.......+|+-+...|++.+... +.+........++..+....-..-|..+|.+++..+...-+..--.++
T Consensus 167 l~~~eet~vr~k~ve~l~~v~~~~--------~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~el 238 (759)
T KOG0211|consen 167 LATVEETGVREKAVESLLKVAVGL--------PKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKREL 238 (759)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc--------ChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHH
Confidence 333555677999988888877653 333333333444444443223334566667777665533222234678
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhH
Q 001249 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDR 224 (1114)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 224 (1114)
.+...+..++.++.+|.++..-++.++..++.. .....+++.+.+...|+ ...||..|+.++..+...+....
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~--~~~s~v~~~~~~L~~Dd-qdsVr~~a~~~~~~l~~l~~~~~---- 311 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLESE--IVKSEVLPTLIQLLRDD-QDSVREAAVESLVSLLDLLDDDD---- 311 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHHHHH--HHHhhccHHHhhhhhcc-hhhHHHHHHHHHHHHHHhcCCch----
Confidence 888888889999999999999999888887663 24566778888888887 88999999999999999885431
Q ss_pred HHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHh
Q 001249 225 FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1114)
Q Consensus 225 ~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1114)
+....+.+.+.+..+++++.++......+..+....+. ...-...++.....++ +...+.|.....-...++..
T Consensus 312 --d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~--~~~~e~r~a~a~~~~~l~~~ 385 (759)
T KOG0211|consen 312 --DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLK--DEEWEVRYAIAKKVQKLACY 385 (759)
T ss_pred --hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhc--chhhhhhHHhhcchHHHhhh
Confidence 33445666777777788888888777777766554333 1111233444444443 33445555443333333332
Q ss_pred hhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 001249 305 RERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPA 384 (1114)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 384 (1114)
... +.. ..-....++|.+.....+... ..+.+.+....-+...+|.+...+.++|.+..
T Consensus 386 l~~-~~~---~~i~~~~ilp~~~~lv~d~~~-----------------~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~ 444 (759)
T KOG0211|consen 386 LNA-SCY---PNIPDSSILPEVQVLVLDNAL-----------------HVRSALASVITGLSPILPKERTISELLPLLIG 444 (759)
T ss_pred cCc-ccc---cccchhhhhHHHHHHHhcccc-----------------hHHHHHhccccccCccCCcCcCccccChhhhh
Confidence 110 000 001224455655544332211 11111222222223334445667778888888
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHH
Q 001249 385 YLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1114)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 463 (1114)
.+++....+|......+..+-.... ..+..+.+..+|.+...-.|.++++|.+..+.+-.++...+..+. -+.+-+
T Consensus 445 ~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~---~~~~~~ 521 (759)
T KOG0211|consen 445 NLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFF---DEKLAE 521 (759)
T ss_pred hcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHh---hHHHHH
Confidence 8888899999888766643332211 133445667888888888899999999999999998877764331 223444
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHh
Q 001249 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYD 543 (1114)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~ 543 (1114)
.+...+.| ....+|.+|...+..+++..+.+ -+...+++.++....+++...|...+.++..++...|..+ +..
T Consensus 522 l~~~~l~d-~v~~Ir~~aa~~l~~l~~~~G~~---w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~ 595 (759)
T KOG0211|consen 522 LLRTWLPD-HVYSIREAAARNLPALVETFGSE---WARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCE 595 (759)
T ss_pred HHHhhhhh-hHHHHHHHHHHHhHHHHHHhCcc---hhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHH
Confidence 44555777 67789999999999999988843 4567788888888777789999999999999999999765 445
Q ss_pred hhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHH
Q 001249 544 AVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKC 623 (1114)
Q Consensus 544 ~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 623 (1114)
.++|.+..... +....+|..+...+..+...+.......++.++...+.. +.+-.++-++..+++.+...
T Consensus 596 ~Llp~~~~l~~----D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~------d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 596 DLLPVFLDLVK----DPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSS------DQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHhHHHHHhcc----CCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhcc------CcccchhHHHHHHHHHHHHH
Confidence 67777777543 234568888888887776655433333333333333222 23334677777777665443
No 45
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.27 E-value=1.1e-05 Score=91.59 Aligned_cols=381 Identities=14% Similarity=0.159 Sum_probs=191.9
Q ss_pred hHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHH-----hhcC-ChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHH
Q 001249 476 RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL-----LQNG-KQMVQEGALTALASVADSSQEHFQKYYDAVMPFL 549 (1114)
Q Consensus 476 ~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~-----l~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L 549 (1114)
.+|..+...+..+...++...+.|..+..-.++... ++.. ...+++..+.+...+. .+.....+++.+...+
T Consensus 377 ~~~~~~rd~~~~v~~~f~~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~--~~~~~dd~l~~l~~~~ 454 (1005)
T KOG2274|consen 377 TARISVRDLLLEVITTFGNEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR--IDDANDDKLIELTIMI 454 (1005)
T ss_pred hhhhhHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHHHH
Confidence 455555566666665555433333333322222211 1111 1333444444433333 1222223444444444
Q ss_pred HHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCc
Q 001249 550 KAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFL 629 (1114)
Q Consensus 550 ~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 629 (1114)
...+... +...+-.|++-+++..+.+.- .-.+....+++..+... ..+...+++..+..++...| -.+-+.
T Consensus 455 ~~~l~~~---e~P~Ll~Ra~~~i~~fs~~~~--~~~~~~~~fl~~~v~~l--~~~~~~~~ki~a~~~~~~~~--~~~vl~ 525 (1005)
T KOG2274|consen 455 DNGLVYQ---ESPFLLLRAFLTISKFSSSTV--INPQLLQHFLNATVNAL--TMDVPPPVKISAVRAFCGYC--KVKVLL 525 (1005)
T ss_pred Hhhcccc---cCHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhh--ccCCCCchhHHHHHHHHhcc--Cceecc
Confidence 4444322 223344477777776554411 01122333333333322 23334556766666555444 123378
Q ss_pred cchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHH-------h
Q 001249 630 PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADE-------L 702 (1114)
Q Consensus 630 ~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~-------~ 702 (1114)
+++|.++..+++....-. ++ +....+ .+|+.+++. .
T Consensus 526 ~~~p~ild~L~qlas~~s------------------~e------------vl~llm-------E~Ls~vv~~dpef~as~ 568 (1005)
T KOG2274|consen 526 SLQPMILDGLLQLASKSS------------------DE------------VLVLLM-------EALSSVVKLDPEFAASM 568 (1005)
T ss_pred ccchHHHHHHHHHccccc------------------HH------------HHHHHH-------HHHHHHhccChhhhhhh
Confidence 899999998888874210 00 111112 233333321 1
Q ss_pred hhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCc-
Q 001249 703 KEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPD- 781 (1114)
Q Consensus 703 ~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~- 781 (1114)
+..+. +.++..+.+.-+| +-|-..+-.++..++... ....++...++|.++..+....+
T Consensus 569 ~skI~---P~~i~lF~k~s~D---P~V~~~~qd~f~el~q~~--------------~~~g~m~e~~iPslisil~~~~~~ 628 (1005)
T KOG2274|consen 569 ESKIC---PLTINLFLKYSED---PQVASLAQDLFEELLQIA--------------ANYGPMQERLIPSLISVLQLNADK 628 (1005)
T ss_pred hcchh---HHHHHHHHHhcCC---chHHHHHHHHHHHHHHHH--------------HhhcchHHHHHHHHHHHHcCcccc
Confidence 22222 2233333333332 244444444544444421 12345566788888888865432
Q ss_pred --HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHH
Q 001249 782 --TEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQ 859 (1114)
Q Consensus 782 --~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~ 859 (1114)
...+.-++.-+..+++.-.+.++...+...+..+.++.-.+ +|...+..
T Consensus 629 ~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHs-----------------------------dD~~tlQ~ 679 (1005)
T KOG2274|consen 629 APAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHS-----------------------------DDHETLQN 679 (1005)
T ss_pred cCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeec-----------------------------CChHHHHh
Confidence 23333344555555555444455555555555554443210 12345667
Q ss_pred HHHHHHHHHHHhhhchhhh-------HHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhc
Q 001249 860 VGEILGTLIKTFKAAFLPF-------FDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAC 932 (1114)
Q Consensus 860 ~~~~l~~l~~~~~~~~~~~-------~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l 932 (1114)
+++|+.+++....+....+ +..++..+..+++...+...-.++-..+-.++.++|..+.+.+++|+..++..|
T Consensus 680 ~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrm 759 (1005)
T KOG2274|consen 680 ATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRL 759 (1005)
T ss_pred HHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Confidence 8899988887644433211 234555555556544444434444556777788888888888999999999888
Q ss_pred cC-CChhHHhhhhHHHHHHHhh
Q 001249 933 ND-ENQDVRQAAVYGLGVCAEF 953 (1114)
Q Consensus 933 ~~-~~~~vr~~a~~~lg~l~~~ 953 (1114)
.. +...|-++-++.+..+...
T Consensus 760 q~ae~lsviQsLi~VfahL~~t 781 (1005)
T KOG2274|consen 760 QQAETLSVIQSLIMVFAHLVHT 781 (1005)
T ss_pred HHhhhHHHHHHHHHHHHHHhhC
Confidence 77 6689999999888888654
No 46
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.27 E-value=1.7e-10 Score=113.99 Aligned_cols=361 Identities=15% Similarity=0.210 Sum_probs=228.2
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhhhh-hhhhhhhhHH-HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchH
Q 001249 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQY-IGDTLTPHLK-HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1114)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~~-~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1114)
+|.+.+.+.|.+-+....|..-+..+... ..+-+.+.++ .++|.|.+.|...+..-.+..|..++.++.+.-......
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 47777777777777777777766665532 2222333332 467888888844325566788999999998764322111
Q ss_pred hHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH--HHHHHHHHHhccCCcchhHHHHHHHHHHH
Q 001249 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (1114)
Q Consensus 223 ~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~ll~~~~~~~~~~~vr~~a~~~l~~ 300 (1114)
-.-...+|.+++.| .+++.+++..++++|+.++... ...++|+- ..++.++.++.....+-.+-..+-..++.
T Consensus 153 Vvd~~AVPlfiqlL----~s~~~~V~eQavWALGNiAGDS-~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 153 VVDAGAVPLFIQLL----SSTEDDVREQAVWALGNIAGDS-EGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred EEeCCchHHHHHHH----cCchHHHHHHHHHHhccccCCc-hhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 11124566666654 4678899999999999988644 33444432 23444444443222223334445555555
Q ss_pred HHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHH
Q 001249 301 LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASE 380 (1114)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~ 380 (1114)
+|+.+ .| .++| . .+...+|
T Consensus 228 lcRGk--nP--------------------------~P~w----------------~-----------------~isqalp 246 (526)
T COG5064 228 LCRGK--NP--------------------------PPDW----------------S-----------------NISQALP 246 (526)
T ss_pred hhCCC--CC--------------------------CCch----------------H-----------------HHHHHHH
Confidence 65531 11 1111 1 1222344
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHH-HHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh
Q 001249 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ-VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1114)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1114)
.+..++.+.+..+-.-|+++++.++.+..+.+...++. +.+.++..|.+++..|+.-++..+|.+...-....+.-.--
T Consensus 247 iL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~ 326 (526)
T COG5064 247 ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINC 326 (526)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheec
Confidence 45556666777888889999999999988766555553 56678889999999999999999999986543322112233
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCch-HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh--h
Q 001249 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--E 536 (1114)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l-~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~--~ 536 (1114)
..++.+...|.+ +..++|..||+.+.++...-... +...+ ..++|.|+.++......+|+.|+++++......- +
T Consensus 327 G~L~a~~~lLs~-~ke~irKEaCWTiSNITAGnteq-iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~P 404 (526)
T COG5064 327 GALKAFRSLLSS-PKENIRKEACWTISNITAGNTEQ-IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRP 404 (526)
T ss_pred ccHHHHHHHhcC-hhhhhhhhhheeecccccCCHHH-HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 566777777887 77799999999999987553322 22222 2467888899999999999999999998765432 3
Q ss_pred hhhhhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHH
Q 001249 537 HFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1114)
Q Consensus 537 ~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1114)
+...|+ +.++..|...+.-..+ .+-..+++|+..+.+
T Consensus 405 D~iryLv~qG~IkpLc~~L~~~dN----kiiev~LD~~eniLk 443 (526)
T COG5064 405 DIIRYLVSQGFIKPLCDLLDVVDN----KIIEVALDAIENILK 443 (526)
T ss_pred hHHHHHHHccchhHHHHHHhccCc----cchhhhHHHHHHHHh
Confidence 455565 3467777777654221 233345777766543
No 47
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.27 E-value=7.1e-08 Score=110.70 Aligned_cols=358 Identities=18% Similarity=0.284 Sum_probs=241.9
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhh-hHHHHH
Q 001249 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLH 186 (1114)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~ 186 (1114)
+++.|.. .+.+.-..++.++..+.....+...-+++.+.+...+.++++.+|..++..++.+.+........ .-..++
T Consensus 43 lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 7777776 35565677888899888866554456888999999999999999999999999887664332211 125688
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH
Q 001249 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP-LMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1114)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p-~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 265 (1114)
+.+..++.++ +..|...|++++..+...-. .+..+++ ..+..+...+...++.+|..+++++..++...+..
T Consensus 122 ~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~------~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 122 PLIIQCLRDP-DLSVAKAAIKALKKLASHPE------GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHcCC-cHHHHHHHHHHHHHHhCCch------hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 8999999997 99999999999999987521 1122211 23555566565557889999999999999888777
Q ss_pred HHHHHH-HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHH--HHHHHHHhhcCCCCCcccccC
Q 001249 266 LRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINR--LFAILMSMLLDIEDDPLWHSA 342 (1114)
Q Consensus 266 ~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~~~~~ 342 (1114)
+..... .+++.++..+.+ .|.-++..+++++..+++... ...|+.+ +++.+...+.+..+|+.
T Consensus 195 ~~~~~~sgll~~ll~eL~~--dDiLvqlnalell~~La~~~~--------g~~yL~~~gi~~~L~~~l~~~~~dp~---- 260 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDS--DDILVQLNALELLSELAETPH--------GLQYLEQQGIFDKLSNLLQDSEEDPR---- 260 (503)
T ss_pred HHHHHhccHHHHHHHHhcC--ccHHHHHHHHHHHHHHHcChh--------HHHHHHhCCHHHHHHHHHhccccCCc----
Confidence 655443 578888776643 355689999999999998311 1233332 66666666654432210
Q ss_pred CCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHH
Q 001249 343 ETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSM 422 (1114)
Q Consensus 343 ~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~ 422 (1114)
. +.-++|..+ ..+|.++...+..+...++.++..
T Consensus 261 ------------~---------------~~~~l~g~~-------------------~f~g~la~~~~~~v~~~~p~~~~~ 294 (503)
T PF10508_consen 261 ------------L---------------SSLLLPGRM-------------------KFFGNLARVSPQEVLELYPAFLER 294 (503)
T ss_pred ------------c---------------cchhhhhHH-------------------HHHHHHHhcChHHHHHHHHHHHHH
Confidence 0 011222222 233444443333344566778888
Q ss_pred HHhcCCCCChhHHHHHHHHHHHhHhhhchhH-H----hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc--
Q 001249 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-Q----NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-- 495 (1114)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~----~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~-- 495 (1114)
+...+.+.++..+..|+.++|.++....... . .+.+..++..+...... ....+|.++..++..++......
T Consensus 295 l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~-~~~~lk~r~l~al~~il~~~~~~~~ 373 (503)
T PF10508_consen 295 LFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKS-GSTELKLRALHALASILTSGTDRQD 373 (503)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHhcCCCCch
Confidence 8888899999999999999999986543211 1 12345566666666766 66789999999999997654321
Q ss_pred -cccCchHHH--------HH-HHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001249 496 -ILTPYLDGI--------VS-KLLVLLQNGKQMVQEGALTALASVADSS 534 (1114)
Q Consensus 496 -~l~~~l~~i--------l~-~L~~~l~~~~~~v~~~al~~l~~l~~~~ 534 (1114)
.+....... .. .++..++.|-+++|..++..+..++..-
T Consensus 374 ~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 374 NDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 110001111 11 5666777888999999999999998764
No 48
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.21 E-value=3.5e-09 Score=114.33 Aligned_cols=255 Identities=17% Similarity=0.208 Sum_probs=162.6
Q ss_pred HhHHHhhHHHHHHHHHHHHhCC-------C-------HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccC---
Q 001249 222 RDRFQDLLPLMMRTLTESLNNG-------N-------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAE--- 284 (1114)
Q Consensus 222 ~~~~~~l~p~ll~~l~~~~~~~-------~-------~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~--- 284 (1114)
++.|.+.+...++.+...+.-+ + +.++..+|+++....+.+.+.|.++++.++..+++++..-
T Consensus 73 Pe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~ 152 (370)
T PF08506_consen 73 PEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQ 152 (370)
T ss_dssp -HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SS
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3455556666666555444311 1 1345667888888888889999999999999888877432
Q ss_pred CcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH-HHHHhhcCCCCC-cccccCCCC-----CccccCCCchhh
Q 001249 285 SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA-ILMSMLLDIEDD-PLWHSAETE-----DEDAGESSNYSV 357 (1114)
Q Consensus 285 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~l~~~~~~-~~~~~~~~~-----~ed~~~~~~~~~ 357 (1114)
...+.+...|+.++.++++...+. ..+. .++++..++. .+++.|.-.++| +.|+.++.| -|..|..+.+.+
T Consensus 153 ~~~D~lv~~al~FL~~v~~~~~~~-~lf~-~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~A 230 (370)
T PF08506_consen 153 PKYDILVSKALQFLSSVAESPHHK-NLFE-NKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRA 230 (370)
T ss_dssp GGGHHHHHHHHHHHHHHHTSHHHH-TTT--SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHH
T ss_pred ccccHHHHHHHHHHHHHHcchhHH-HHhC-CHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHH
Confidence 223456678999999887732111 1111 2466777665 456666644433 345544321 112234567789
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhC------CCChhHHHHHHHHHHHHHhhcHH------------HHHHhHH-H
Q 001249 358 GQECLDRLAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAK------------VMVKNLE-Q 418 (1114)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~~------------~~~~~l~-~ 418 (1114)
|.+.+..+++.++ +.+.+.+..++...++ +.+|+.+.+|+..++.++..... .+.+.+. .
T Consensus 231 A~dfl~~L~~~~~-~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~ 309 (370)
T PF08506_consen 231 ACDFLRSLCKKFE-KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQH 309 (370)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHH
Confidence 9999999998886 6777777777777765 56899999999999999875421 1222222 2
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHH
Q 001249 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (1114)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al 485 (1114)
++|-+. .-.+.+|.+|..|++.+..+-..+++ ..+..++|.+.+.|.+ ++.-|+..|+.++
T Consensus 310 v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~-~~~vv~tyAA~~i 370 (370)
T PF08506_consen 310 VLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQS-SSYVVHTYAAIAI 370 (370)
T ss_dssp TCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred hHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCC-CCcchhhhhhhhC
Confidence 334443 22367899999999999998877664 5678899999999999 8888888877664
No 49
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.3e-05 Score=92.92 Aligned_cols=474 Identities=14% Similarity=0.176 Sum_probs=266.0
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC-ChhhHHHHHHHHHHhhhhhhhh
Q 001249 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDT 177 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~~~ 177 (1114)
+..+.+...|++++.+ .+..||-.+|.-++.++... |..--.+.+..++.++.-. +...=++|+.+|+.++..- =.
T Consensus 337 eivE~vie~Lls~l~d-~dt~VrWSaAKg~grvt~rl-p~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lL 413 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSD-TDTVVRWSAAKGLGRVTSRL-PPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LL 413 (1133)
T ss_pred HHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHccC-cHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Cc
Confidence 5677888899999996 89999999999999999863 3122245566666644332 3455679999999888651 11
Q ss_pred hhhhHHHHHHHHHHhhcCC-------CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHH-HHHHHhCCCHHHHH
Q 001249 178 LTPHLKHLHAVFLNCLTNS-------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRT-LTESLNNGNEATAQ 249 (1114)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~-l~~~~~~~~~~~~~ 249 (1114)
+...++.++|++.+++.-+ ....||.+|+-.+-.+....+.. .+.+++..+... +...+=+++-..|.
T Consensus 414 lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~----~l~p~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 414 LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS----DLKPVLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh----hhhHHHHHHHHHHHHHHhcCchhhHhH
Confidence 2235778888888887643 25689999999888888876432 222222222222 22233467778899
Q ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHh
Q 001249 250 EALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSM 329 (1114)
Q Consensus 250 ~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 329 (1114)
+|..+|.+.+...+.+ ||--.++. .. ....-..|..+ +..++.. +..++.|...++..++..
T Consensus 490 AAsAAlqE~VGR~~n~--p~Gi~Lis----~~--dy~sV~~rsNc---y~~l~~~-------ia~~~~y~~~~f~~L~t~ 551 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNF--PHGISLIS----TI--DYFSVTNRSNC---YLDLCVS-------IAEFSGYREPVFNHLLTK 551 (1133)
T ss_pred HHHHHHHHHhccCCCC--CCchhhhh----hc--chhhhhhhhhH---HHHHhHH-------HHhhhhHHHHHHHHHHhc
Confidence 9999999988765432 11111111 00 00111123333 2233321 122344566666665543
Q ss_pred -hcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 001249 330 -LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC 408 (1114)
Q Consensus 330 -l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~ 408 (1114)
+. -|+. ..+..++.+|..++...+ +.+....++-+.....+.+...|++...+.|.+.-++
T Consensus 552 Kv~------HWd~-----------~irelaa~aL~~Ls~~~p-k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 552 KVC------HWDV-----------KIRELAAYALHKLSLTEP-KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred ccc------cccH-----------HHHHHHHHHHHHHHHhhH-HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHh
Confidence 22 1321 133467778888887665 4444444444444556788999999999999988765
Q ss_pred HHHH--HHh--------HHHHHHHHHhcCCCCC--hhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChh
Q 001249 409 AKVM--VKN--------LEQVLSMVLNSFRDPH--PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 476 (1114)
Q Consensus 409 ~~~~--~~~--------l~~i~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~ 476 (1114)
...- ..+ +..+++.+...-.+.. ...|.+.+..+.++...-..-............+.+.+.+ ++ .
T Consensus 614 ~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~-~n-~ 691 (1133)
T KOG1943|consen 614 RKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL-PN-Q 691 (1133)
T ss_pred hhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc-hH-H
Confidence 4311 111 1122332222211111 4556666666666543322211111223333444555555 45 7
Q ss_pred HHHHHHHHHHHhhhcCCcccccCchH-HHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHh
Q 001249 477 VQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQNG-KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1114)
Q Consensus 477 v~~~a~~al~~l~~~~~~~~l~~~l~-~il~~L~~~l~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~ 554 (1114)
+|..|.++++.++...-.. .++.. .++...+..+.+. ...+|.....+++.+....-. .++.+.+...+....
T Consensus 692 i~~~av~av~~l~s~y~~~--d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~--~~~q~~lc~~~l~~~- 766 (1133)
T KOG1943|consen 692 IRDAAVSAVSDLVSTYVKA--DEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIH--RHLQEKLCKLVLELL- 766 (1133)
T ss_pred HHHHHHHHHHHHHHHHHhc--CchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhc--hHHHHHHHHHHhccC-
Confidence 8999999999988653211 12222 4666666666665 567777777777665532211 112233322222211
Q ss_pred hccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCC-C----CCCchhhHHHHHHHHHHHHh
Q 001249 555 NATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQM-E----TDDPTTSYMLQAWARLCKCL 624 (1114)
Q Consensus 555 ~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~-~----~~~~~~~~~~~~~~~l~~~~ 624 (1114)
+.+ -...-|...+.++..+...++...|..-..++++.+++.+.+.. + -...+|+.++.++..+-..+
T Consensus 767 -p~d-~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l 839 (1133)
T KOG1943|consen 767 -PSD-AWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTL 839 (1133)
T ss_pred -ccc-ccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhh
Confidence 111 13445666778888888777755555566667776666433211 1 12248888888887765544
No 50
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.20 E-value=7.4e-06 Score=95.78 Aligned_cols=152 Identities=18% Similarity=0.143 Sum_probs=113.6
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHh-----h----chhhhHHHHHHHHH
Q 001249 58 TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQ-----L----ESAKSISKKLCDTV 128 (1114)
Q Consensus 58 ~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~-----~----e~~~~vr~~~~~~i 128 (1114)
+..|++-+- ++..++|+-|++.++..+..+ ...++.+..+.+...++..+. + +....||...++++
T Consensus 79 ~e~L~~~~~-~~~we~rhg~~i~lrei~~~h----~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L 153 (1549)
T KOG0392|consen 79 LEELVNDLF-EPQWEIRHGAAIALREILKTH----GDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQAL 153 (1549)
T ss_pred HHHHHHHhc-CchhhhhcCcchhhhhHHHHh----cchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHH
Confidence 333443332 567899999999999999887 555555555555555554432 1 23457999999999
Q ss_pred HHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 001249 129 SELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNA 208 (1114)
Q Consensus 129 ~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~ 208 (1114)
+.+.++..+ ....+.+..+.+++..++++.|++++..+.+......+.+....+.+++.+..+|.|. +..||..|...
T Consensus 154 ~~~l~~~~~-s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds-~ddv~~~aa~~ 231 (1549)
T KOG0392|consen 154 GAYLKHMDE-SLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDS-DDDVRSVAAQF 231 (1549)
T ss_pred HHHHHhhhh-HhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-chHHHHHHHHH
Confidence 999987655 5566778888888888899999999999887776444444456778889999999997 89999999998
Q ss_pred HHHHHHhc
Q 001249 209 VINFIQCL 216 (1114)
Q Consensus 209 l~~l~~~~ 216 (1114)
+..+....
T Consensus 232 l~~~~s~~ 239 (1549)
T KOG0392|consen 232 LVPAPSIQ 239 (1549)
T ss_pred hhhhhHHH
Confidence 88777654
No 51
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.16 E-value=1.7e-07 Score=107.66 Aligned_cols=424 Identities=16% Similarity=0.190 Sum_probs=250.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCc--hHH-HHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDP--DSL-TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p--~~~-~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
+.+..+|+++.+. +.|.++-..++......| +.+ ...++..|.++ +.+.-..+.-+|++++... -..
T Consensus 3 ~~~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~-------~~~ 72 (503)
T PF10508_consen 3 EWINELLEELSSK--AERLEALPELKTELSSSPFLERLPEPVLFDCLNTS-NREQVELICDILKRLLSAL-------SPD 72 (503)
T ss_pred hHHHHHHHHHhcc--cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc-ChHHHHHHHHHHHHHHhcc-------CHH
Confidence 3566777777655 444444444443211122 111 23366667655 4444467778899988763 123
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC---CchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhh
Q 001249 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG 175 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~---~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~ 175 (1114)
.....++..+..+|.+ +++.||..++..++.++.+..... .-+++++.+..++.+++..+...|+.+|..++..-.
T Consensus 73 ~l~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~ 151 (503)
T PF10508_consen 73 SLLPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE 151 (503)
T ss_pred HHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch
Confidence 3467788889999997 799999999999998876532111 236899999999999999999999999999987532
Q ss_pred hhhhhh-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHH-HHHHHHHHHHhCCCHHHHHHHHH
Q 001249 176 DTLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP-LMMRTLTESLNNGNEATAQEALE 253 (1114)
Q Consensus 176 ~~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p-~ll~~l~~~~~~~~~~~~~~~~~ 253 (1114)
.+... -..+...+.+.+..+ +..+|..+..++..+...- .+.+..... .+++.+...+.++|.-++..+++
T Consensus 152 -~~~~l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S-----~~~~~~~~~sgll~~ll~eL~~dDiLvqlnale 224 (503)
T PF10508_consen 152 -GLEQLFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHS-----PEAAEAVVNSGLLDLLLKELDSDDILVQLNALE 224 (503)
T ss_pred -hHHHHhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcC-----HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHH
Confidence 11111 112256677777765 7789999999888887642 122221111 24555555566777778899999
Q ss_pred HHHHHHccchHHHHHHHH--HHHHHHHHHhccCCcch---hHH-HHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001249 254 LLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEE---GTR-HLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1114)
Q Consensus 254 ~l~~l~~~~~~~~~~~~~--~l~~~ll~~~~~~~~~~---~vr-~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1114)
++..+++.. .- ..++. .+++.+...+.+.+.++ .+. ...+.|...++.. .|.. .....+.++..++
T Consensus 225 ll~~La~~~-~g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~~~---v~~~~p~~~~~l~ 296 (503)
T PF10508_consen 225 LLSELAETP-HG-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SPQE---VLELYPAFLERLF 296 (503)
T ss_pred HHHHHHcCh-hH-HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---ChHH---HHHHHHHHHHHHH
Confidence 999999833 21 22222 45666666554443333 111 1234556655552 2211 1112233333333
Q ss_pred HhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcc--------hHHHHHHHHHhhCCCChhHHHHHHH
Q 001249 328 SMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTI--------VPVASEQLPAYLAAPEWQKHHAALI 399 (1114)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~--------~~~l~~~l~~~l~~~~~~~r~aal~ 399 (1114)
.++... +.+...+|.++++.++....++.+ +..++..+.....+..-..|..++.
T Consensus 297 ~~~~s~-----------------d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~ 359 (503)
T PF10508_consen 297 SMLESQ-----------------DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALH 359 (503)
T ss_pred HHhCCC-----------------ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 322111 122345677777777644322222 3345555556666777788999999
Q ss_pred HHHHHHhhcHH----HHHHhHHHH--------HH-HHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHH
Q 001249 400 ALAQIAEGCAK----VMVKNLEQV--------LS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 466 (1114)
Q Consensus 400 ~l~~l~~~~~~----~~~~~l~~i--------~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~ 466 (1114)
+++.+.....+ .+....... .. .+...++.|-|.+|.++...+..++.+-.....-...+.++..++
T Consensus 360 al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~ll 439 (503)
T PF10508_consen 360 ALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLL 439 (503)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhc
Confidence 99999653332 111111111 12 677788889999999999999999875322111134566777777
Q ss_pred hhccCCCChhHHHHHHHHHHHhh
Q 001249 467 GAMDDFQNPRVQAHAASAVLNFS 489 (1114)
Q Consensus 467 ~~l~~~~~~~v~~~a~~al~~l~ 489 (1114)
..-.+ +++..++.=...+..+.
T Consensus 440 dr~~E-~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 440 DRSTE-TTKEGKEAKYDIIKALA 461 (503)
T ss_pred CCCCC-CCHHHHHHHHHHHHHHH
Confidence 66555 55555443333333444
No 52
>PRK09687 putative lyase; Provisional
Probab=99.15 E-value=8.9e-09 Score=107.55 Aligned_cols=251 Identities=18% Similarity=0.210 Sum_probs=144.5
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHH
Q 001249 188 VFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR 267 (1114)
Q Consensus 188 ~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 267 (1114)
.+...|.+. +..||..|+.+|..+-. . ..+..+..+++++++.+|..+...|+.+......
T Consensus 27 ~L~~~L~d~-d~~vR~~A~~aL~~~~~-------~--------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 27 ELFRLLDDH-NSLKRISSIRVLQLRGG-------Q--------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHhcCc-------c--------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 445556776 88888888888764321 1 1222333345577888888888888887542211
Q ss_pred HHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCc
Q 001249 268 RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDE 347 (1114)
Q Consensus 268 ~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~e 347 (1114)
....++.+...+. .+.+..||..|+..++.++.. .+
T Consensus 88 --~~~a~~~L~~l~~-~D~d~~VR~~A~~aLG~~~~~---~~-------------------------------------- 123 (280)
T PRK09687 88 --QDNVFNILNNLAL-EDKSACVRASAINATGHRCKK---NP-------------------------------------- 123 (280)
T ss_pred --hHHHHHHHHHHHh-cCCCHHHHHHHHHHHhccccc---cc--------------------------------------
Confidence 1223333333321 244567777777776655331 00
Q ss_pred cccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcC
Q 001249 348 DAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF 427 (1114)
Q Consensus 348 d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 427 (1114)
...+.+.+.+...+.|++|.+|.++..+|+.+.. +..++.++..+
T Consensus 124 -------------------------~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L 168 (280)
T PRK09687 124 -------------------------LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLL 168 (280)
T ss_pred -------------------------ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHh
Confidence 0011223334445566777888877777765432 24566777777
Q ss_pred CCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHH
Q 001249 428 RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK 507 (1114)
Q Consensus 428 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~ 507 (1114)
.|+++.||..|..+||.+.. ..+.+.+.|...+.| +++.||..|..+|+.+ +. +..++.
T Consensus 169 ~d~~~~VR~~A~~aLg~~~~---------~~~~~~~~L~~~L~D-~~~~VR~~A~~aLg~~----~~-------~~av~~ 227 (280)
T PRK09687 169 KDPNGDVRNWAAFALNSNKY---------DNPDIREAFVAMLQD-KNEEIRIEAIIGLALR----KD-------KRVLSV 227 (280)
T ss_pred cCCCHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHhcC-CChHHHHHHHHHHHcc----CC-------hhHHHH
Confidence 77888888888888877621 123566667777777 7777888777777653 11 234566
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHH
Q 001249 508 LLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (1114)
Q Consensus 508 L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l 572 (1114)
|++.+++++ ++..++.++|.+.. +..+|.|...+.... +..++.++++.+
T Consensus 228 Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~---d~~v~~~a~~a~ 277 (280)
T PRK09687 228 LIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFD---DNEIITKAIDKL 277 (280)
T ss_pred HHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCC---ChhHHHHHHHHH
Confidence 666666654 45556666666543 134566666554322 234555565554
No 53
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=3e-07 Score=101.84 Aligned_cols=439 Identities=15% Similarity=0.185 Sum_probs=273.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHH---HHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHH
Q 001249 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSL---TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (1114)
Q Consensus 24 l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~---~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~ 100 (1114)
|-+++.+.-|.|.++++-..-+|-++.+.+|+-. +.++-.-| .++++.+|..|...|..+=-. .+.+
T Consensus 73 Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L-~DpN~LiRasALRvlSsIRvp-------~IaP-- 142 (968)
T KOG1060|consen 73 FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKAL-KDPNQLIRASALRVLSSIRVP-------MIAP-- 142 (968)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhh-cCCcHHHHHHHHHHHHhcchh-------hHHH--
Confidence 4455666777777777777777777776666532 11111112 266777787776666543110 1111
Q ss_pred HHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhh
Q 001249 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (1114)
Q Consensus 101 ~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 180 (1114)
.+.-.+-++.. ++.+-||+.+|++|-++.+.+ + .+.+++...+..++.+.++.+...|..++..+|.+--+-+..
T Consensus 143 --I~llAIk~~~~-D~s~yVRk~AA~AIpKLYsLd-~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHk 217 (968)
T KOG1060|consen 143 --IMLLAIKKAVT-DPSPYVRKTAAHAIPKLYSLD-P-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHK 217 (968)
T ss_pred --HHHHHHHHHhc-CCcHHHHHHHHHhhHHHhcCC-h-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhH
Confidence 11122222233 589999999999999987743 2 456688888889999999999999999999998765555555
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh-cCCcc-----------------------hHhHHHhhHHHHHHHH
Q 001249 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC-LTSSA-----------------------DRDRFQDLLPLMMRTL 236 (1114)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~-~~~~~-----------------------~~~~~~~l~p~ll~~l 236 (1114)
++..++.++.+.=.. -+...++.|...++. +.++. .+-....=+..+++..
T Consensus 218 nyrklC~ll~dvdeW-----gQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~st 292 (968)
T KOG1060|consen 218 NYRKLCRLLPDVDEW-----GQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQST 292 (968)
T ss_pred HHHHHHhhccchhhh-----hHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhc
Confidence 666666555432211 134555666665543 11110 0000011233577777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcch
Q 001249 237 TESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLP 316 (1114)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 316 (1114)
..++++.++.+...+++++..++-.. ....|+..++.++.. +.+++...+..+.+++. +.|.++ .
T Consensus 293 kpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~---~~~~lF---~ 357 (968)
T KOG1060|consen 293 KPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS---NREVQYVVLQNIATISI---KRPTLF---E 357 (968)
T ss_pred cHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHh---cchhhh---h
Confidence 78888999999999999988876432 234455555555532 45667777777877777 345433 2
Q ss_pred hhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHH
Q 001249 317 QFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHA 396 (1114)
Q Consensus 317 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~a 396 (1114)
||+++++ ....|. ......-.+.|..|+ . +.-++.+++-+..++++.+...--+
T Consensus 358 P~lKsFf-------v~ssDp---------------~~vk~lKleiLs~La---~-esni~~ILrE~q~YI~s~d~~faa~ 411 (968)
T KOG1060|consen 358 PHLKSFF-------VRSSDP---------------TQVKILKLEILSNLA---N-ESNISEILRELQTYIKSSDRSFAAA 411 (968)
T ss_pred hhhhceE-------eecCCH---------------HHHHHHHHHHHHHHh---h-hccHHHHHHHHHHHHhcCchhHHHH
Confidence 3433322 111110 001111123444444 2 4557778888899999988877777
Q ss_pred HHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChh
Q 001249 397 ALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR 476 (1114)
Q Consensus 397 al~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~ 476 (1114)
++.++|..+.... ..-+..+..++..++..+..|...+...+..+...-+. .+..++..+.+.+....-+.
T Consensus 412 aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~-----~h~~ii~~La~lldti~vp~ 482 (968)
T KOG1060|consen 412 AVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA-----EHLEILFQLARLLDTILVPA 482 (968)
T ss_pred HHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH-----HHHHHHHHHHHHhhhhhhhh
Confidence 8888888776533 23345566667777777888999999888888764332 23345555666554433466
Q ss_pred HHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001249 477 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1114)
Q Consensus 477 v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~ 537 (1114)
.|....|.++..++..+ ...++++..+.+.+.+....+|-+++.....+--...+.
T Consensus 483 ARA~IiWLige~~e~vp-----ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~ 538 (968)
T KOG1060|consen 483 ARAGIIWLIGEYCEIVP-----RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ 538 (968)
T ss_pred hhceeeeeehhhhhhcc-----hhchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh
Confidence 67777788887776643 457888999999999999999988888776665444433
No 54
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.09 E-value=2.8e-07 Score=103.71 Aligned_cols=381 Identities=15% Similarity=0.156 Sum_probs=234.6
Q ss_pred HHHHHhhcCCCh---hhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcc--
Q 001249 146 PFMFQCVSSDSV---KLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA-- 220 (1114)
Q Consensus 146 ~~l~~~~~~~~~---~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-- 220 (1114)
|.+++.+.+.+. ...+..+.++..++..-. -+......++..+........+...-..++.++..++.......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 556666654433 456667777777775421 12223445555555555543356677788888888887643322
Q ss_pred -hHhHHHh--hHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHHHH-----hccCCc-c
Q 001249 221 -DRDRFQD--LLPLMMRTLTESLNNGN---EATAQEALELLIELAGTEPRF-LRRQLVDVVGSMLQI-----AEAESL-E 287 (1114)
Q Consensus 221 -~~~~~~~--l~p~ll~~l~~~~~~~~---~~~~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~ll~~-----~~~~~~-~ 287 (1114)
....+.. ++|.+++.......... +.....+..++..++...+.. -...+..++..++.. ...... .
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccc
Confidence 2333433 77778777766543322 233333334444444333222 122233444444300 000000 0
Q ss_pred hhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHH
Q 001249 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI 367 (1114)
Q Consensus 288 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~ 367 (1114)
.......+-.+..+...- .+.. .. +....++..++.+.....+ ...+..+.+++..+.+
T Consensus 161 ~~~~~~~~~l~~~il~~l--~~~~--~~-~~~~~ll~~l~~~~~~~~~----------------~~~~~~~~~~la~LvN 219 (415)
T PF12460_consen 161 SEQQSRLVILFSAILCSL--RKDV--SL-PDLEELLQSLLNLALSSED----------------EFSRLAALQLLASLVN 219 (415)
T ss_pred ccccccHHHHHHHHHHcC--Cccc--Cc-cCHHHHHHHHHHHHHcCCC----------------hHHHHHHHHHHHHHHc
Confidence 011112222223332210 0100 01 1233455555554433221 1235567788888888
Q ss_pred HcCCCcchHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhH
Q 001249 368 ALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1114)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1114)
.++....+..++..+...+ .+.....|..++..+.++.++.--...+....++..++..+.| +.+...++.+++.+.
T Consensus 220 K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~ 297 (415)
T PF12460_consen 220 KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILL 297 (415)
T ss_pred CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHh
Confidence 8765555555666555555 4556778888888888888764321124455677778888877 668888999998887
Q ss_pred hhhch------------hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhc
Q 001249 447 TDLGP------------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN 514 (1114)
Q Consensus 447 ~~~~~------------~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~ 514 (1114)
..... -...+++..++|.+++..++ .+...+.....||..++++.+.+.+.++++.++|.+++.++.
T Consensus 298 ~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~-~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~ 376 (415)
T PF12460_consen 298 SDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE-ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL 376 (415)
T ss_pred cCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh-cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 65321 11235678899999999887 555688888999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHH
Q 001249 515 GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 551 (1114)
Q Consensus 515 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~ 551 (1114)
++..++..++.++..+....++.+.+|++.++|.|.+
T Consensus 377 ~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 377 PDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998888899999999998875
No 55
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.9e-06 Score=95.72 Aligned_cols=476 Identities=13% Similarity=0.132 Sum_probs=262.6
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 001249 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHA 187 (1114)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~ 187 (1114)
|.+.|.+..+...+.+.-.+|+.||+. ..-.+++|.+.....+.+.+++.....-|-.-+|.-++... --+.
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G----~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----LSIn 111 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKG----KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----LSIN 111 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----eeHH
Confidence 444555556677777777888888874 34688999999999998888887655544444544333210 1134
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHH
Q 001249 188 VFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR 267 (1114)
Q Consensus 188 ~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 267 (1114)
.|.+.|.|+ ++.+|..|++++..+=- .-+.|.++-.+.++..+..+-+|+.|.-++..+-...++.-.
T Consensus 112 tfQk~L~Dp-N~LiRasALRvlSsIRv-----------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 112 TFQKALKDP-NQLIRASALRVLSSIRV-----------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred HHHhhhcCC-cHHHHHHHHHHHHhcch-----------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 678889997 99999999988875432 235677888888888888899999988888877654443322
Q ss_pred HHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhh-----ccchhhh---cchhhHHH-HHHHHHHhhcCCCCCcc
Q 001249 268 RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE-----RAPGMMR---KLPQFINR-LFAILMSMLLDIEDDPL 338 (1114)
Q Consensus 268 ~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~-----~~~~~~~---~~~~~~~~-l~~~l~~~l~~~~~~~~ 338 (1114)
.+.+++..++ . |.+.-|.-.|.-.+..+|..+- +.-..++ .+..+-+. ++..|..+-...--++
T Consensus 180 -qL~e~I~~LL---a--D~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P- 252 (968)
T KOG1060|consen 180 -QLEEVIKKLL---A--DRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP- 252 (968)
T ss_pred -HHHHHHHHHh---c--CCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc-
Confidence 3444444443 3 3345555555555555544210 0000000 00001011 2222222211110011
Q ss_pred cccCCCCCccccCCCchhhHHHHHHHHHHHcCC---CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHh
Q 001249 339 WHSAETEDEDAGESSNYSVGQECLDRLAIALGG---NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN 415 (1114)
Q Consensus 339 ~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 415 (1114)
|..++ +-+++.....-.. .....-+| +.=+..+++.....+.|.++.+-.|++.++..++-. ..
T Consensus 253 ~~~~~-~~e~n~~~~~~~~------~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~------~~ 319 (968)
T KOG1060|consen 253 TVVDS-SLEDNGRSCNLKD------KYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK------NQ 319 (968)
T ss_pred ccccc-ccccCcccccccc------cccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH------HH
Confidence 11000 0001000000000 00000011 223445666677778888898888888888887753 24
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhH-----------------------------HhhhhhhhHHHHH
Q 001249 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-----------------------------QNQFHPQVLPALA 466 (1114)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----------------------------~~~~~~~il~~l~ 466 (1114)
...|+..++..|. .++.+|+..+..+..++..-+.-+ .......|++.+.
T Consensus 320 ~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q 398 (968)
T KOG1060|consen 320 VTKIAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQ 398 (968)
T ss_pred HHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 4556666666554 355677777777777765432211 0123456677777
Q ss_pred hhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhh
Q 001249 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVM 546 (1114)
Q Consensus 467 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~ 546 (1114)
..+.+ .+.++...+..+|+....... ..-+..+..|+.++.+.+..|-..+...|..+...-+.....++..+
T Consensus 399 ~YI~s-~d~~faa~aV~AiGrCA~~~~-----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~L- 471 (968)
T KOG1060|consen 399 TYIKS-SDRSFAAAAVKAIGRCASRIG-----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQL- 471 (968)
T ss_pred HHHhc-CchhHHHHHHHHHHHHHHhhC-----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHH-
Confidence 77777 555777888888888776654 34577889999999998988989999999998887665433333333
Q ss_pred HHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhcc
Q 001249 547 PFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQ 626 (1114)
Q Consensus 547 ~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 626 (1114)
...+.+.. ...-|+..+..+|..+..+. ..++.++..+..-.. ++.+.++-.++..- ++.+--
T Consensus 472 ---a~lldti~---vp~ARA~IiWLige~~e~vp-----ri~PDVLR~laksFs---~E~~evKlQILnL~---aKLyl~ 534 (968)
T KOG1060|consen 472 ---ARLLDTIL---VPAARAGIIWLIGEYCEIVP-----RIAPDVLRKLAKSFS---DEGDEVKLQILNLS---AKLYLT 534 (968)
T ss_pred ---HHHhhhhh---hhhhhceeeeeehhhhhhcc-----hhchHHHHHHHHhhc---cccchhhHHHHHhh---hhheEe
Confidence 33322211 11234444445555443322 223445555554222 12344555554432 222211
Q ss_pred CCccchhhhhHHHHHhccCCCCc
Q 001249 627 DFLPYMSVVMPPLLQSAQLKPDV 649 (1114)
Q Consensus 627 ~~~~~l~~i~~~ll~~~~~~~~~ 649 (1114)
+... ...+...+++...+|+..
T Consensus 535 ~~~~-~kll~~Yv~~L~~yD~sY 556 (968)
T KOG1060|consen 535 NIDQ-TKLLVQYVFELARYDLSY 556 (968)
T ss_pred chhh-HHHHHHHHHHHhccCCCc
Confidence 1111 445666667776666543
No 56
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.08 E-value=2.5e-08 Score=123.36 Aligned_cols=274 Identities=17% Similarity=0.183 Sum_probs=182.3
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhH
Q 001249 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDR 224 (1114)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 224 (1114)
++.|.+.+.++++.+|..|+..|+.+.. +..++.+...|.|+ +..||..|+.+|..+......
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCc------
Confidence 4677788889999999999998886631 23456677778887 899999999998877653311
Q ss_pred HHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHh
Q 001249 225 FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1114)
Q Consensus 225 ~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1114)
...+...++++++.+|..++..|..+..... ..++..+. +.+..+|..|+..+..+-.
T Consensus 686 --------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-----------~~l~~~L~--D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 686 --------APALRDHLGSPDPVVRAAALDVLRALRAGDA-----------ALFAAALG--DPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred --------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-----------HHHHHHhc--CCCHHHHHHHHHHHhcccC-
Confidence 0123334556788999999888877542111 12233343 4567889888777664311
Q ss_pred hhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 001249 305 RERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPA 384 (1114)
Q Consensus 305 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 384 (1114)
+ +. +...+.+. +...+..+...|..+...- +...+.+..
T Consensus 744 ----~----------~~----l~~~l~D~-----------------~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ 782 (897)
T PRK13800 744 ----V----------ES----VAGAATDE-----------------NREVRIAVAKGLATLGAGG------APAGDAVRA 782 (897)
T ss_pred ----c----------HH----HHHHhcCC-----------------CHHHHHHHHHHHHHhcccc------chhHHHHHH
Confidence 0 11 12222111 1223444555555543211 112455667
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHH
Q 001249 385 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPA 464 (1114)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~ 464 (1114)
.++|++|.+|.+|+.+|+.+... +.+.+.+...+.|+++.||.+|+.+|+.+.. +..++.
T Consensus 783 ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~ 842 (897)
T PRK13800 783 LTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPA 842 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHH
Confidence 78889999999999999887432 1233557778899999999999999987531 245578
Q ss_pred HHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 001249 465 LAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (1114)
Q Consensus 465 l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~ 529 (1114)
|...|+| +++.||..|..+|..+ . --+...+.|...+++.+..||..|..+|..
T Consensus 843 L~~~L~D-~~~~VR~~A~~aL~~~----~------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 843 LVEALTD-PHLDVRKAAVLALTRW----P------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHhcC-CCHHHHHHHHHHHhcc----C------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 8888889 8999999999998875 1 012446777788889999999999888764
No 57
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=0.00011 Score=85.42 Aligned_cols=575 Identities=16% Similarity=0.162 Sum_probs=297.6
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCC-CChh----HHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCC
Q 001249 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA-PEWQ----KHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFR 428 (1114)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-~~~~----~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~ 428 (1114)
+++|+-++..+ +...++.+.+..++.-.+.. ..|. .+.+-+.++.++...++ +..-++....+..+-..-.
T Consensus 192 r~~aalllsk~---~sR~D~~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~ 268 (1133)
T KOG1943|consen 192 RRSAALLLSKL---FSRTDVKDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRE 268 (1133)
T ss_pred HHHHHHHHHHH---cccccHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhccccc
Confidence 34444444433 32235555566666554442 2333 34677777777777655 3334444444443333221
Q ss_pred -CCC-hhHHHHHHHHHHHhHhhh-c---------------------------------------hhHHhhhhhhhHHHHH
Q 001249 429 -DPH-PRVRWAAINAIGQLSTDL-G---------------------------------------PDLQNQFHPQVLPALA 466 (1114)
Q Consensus 429 -d~~-~~vr~~a~~~l~~l~~~~-~---------------------------------------~~~~~~~~~~il~~l~ 466 (1114)
+.+ ..+|+.-+++..++.-.+ + .+. ..+++.++..++
T Consensus 269 ~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv-~eivE~vie~Ll 347 (1133)
T KOG1943|consen 269 SNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDV-PEIVEFVIEHLL 347 (1133)
T ss_pred ccccHhHHHHHHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCccccccccccccccc-HHHHHHHHHHHH
Confidence 222 344444444444332111 0 111 246678889999
Q ss_pred hhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHhhhhhhhhhHhhh
Q 001249 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-KQMVQEGALTALASVADSSQEHFQKYYDAV 545 (1114)
Q Consensus 467 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~i 545 (1114)
..++| .+..||..|+..++.+....+.+.....++.+++ ++... +...=..++-+++.++.. |-....-++.+
T Consensus 348 s~l~d-~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid----~~~p~e~~~aWHgacLaLAELA~r-GlLlps~l~dV 421 (1133)
T KOG1943|consen 348 SALSD-TDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID----LFNPAEDDSAWHGACLALAELALR-GLLLPSLLEDV 421 (1133)
T ss_pred HhccC-CcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH----hcCcCCchhHHHHHHHHHHHHHhc-CCcchHHHHHH
Confidence 99999 8999999999999999998876543333444444 33221 133334788888887754 21222356778
Q ss_pred hHHHHHHHhhccC----ccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHH
Q 001249 546 MPFLKAILVNATD----KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLC 621 (1114)
Q Consensus 546 ~~~L~~~l~~~~~----~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 621 (1114)
+|.+...+.-... .....+|-.|.-.+..++++..+..+.|++..+...++..- -++..--.|..+..+|....
T Consensus 422 vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~A--lFDrevncRRAAsAAlqE~V 499 (1133)
T KOG1943|consen 422 VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVA--LFDREVNCRRAASAALQENV 499 (1133)
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHH--hcCchhhHhHHHHHHHHHHh
Confidence 8888877653221 12345788777777788899888889998888887665411 12222235666666665543
Q ss_pred HHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHH
Q 001249 622 KCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADE 701 (1114)
Q Consensus 622 ~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~ 701 (1114)
...|. .|+= ++. ....+ .++|. .+..+..-++.....
T Consensus 500 GR~~n--~p~G---i~L-is~~d--------------------------------y~sV~-----~rsNcy~~l~~~ia~ 536 (1133)
T KOG1943|consen 500 GRQGN--FPHG---ISL-ISTID--------------------------------YFSVT-----NRSNCYLDLCVSIAE 536 (1133)
T ss_pred ccCCC--CCCc---hhh-hhhcc--------------------------------hhhhh-----hhhhHHHHHhHHHHh
Confidence 33221 1110 110 00010 00111 112222223333222
Q ss_pred hhhhccccHHHHHHHhhhc-ccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCC
Q 001249 702 LKEGFFPWIDQVAPTLVPL-LKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEP 780 (1114)
Q Consensus 702 ~~~~~~p~~~~~~~~l~~~-l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 780 (1114)
|..|...+++.++.. +.+ ++..+|..++.+|..|.... .+.+.+..+|+++...-. .
T Consensus 537 ----~~~y~~~~f~~L~t~Kv~H-Wd~~irelaa~aL~~Ls~~~----------------pk~~a~~~L~~lld~~ls-~ 594 (1133)
T KOG1943|consen 537 ----FSGYREPVFNHLLTKKVCH-WDVKIRELAAYALHKLSLTE----------------PKYLADYVLPPLLDSTLS-K 594 (1133)
T ss_pred ----hhhHHHHHHHHHHhccccc-ccHHHHHHHHHHHHHHHHhh----------------HHhhcccchhhhhhhhcC-C
Confidence 455666666665544 443 57889999999998865432 223334456666665533 4
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHH
Q 001249 781 DTEICASMLDSLNECIQISGPLL--DEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFD 858 (1114)
Q Consensus 781 ~~~~~~~~l~~l~~~l~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~ 858 (1114)
+...+.....+.++++..+...- .......-+..+...+.....+...+ | ...-.+.
T Consensus 595 ~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~r----g-----------------~~~lmr~ 653 (1133)
T KOG1943|consen 595 DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYR----G-----------------QGTLMRQ 653 (1133)
T ss_pred ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhcc----c-----------------hHHHHHH
Confidence 55666666677777766543211 01000111111111111111111100 0 0112233
Q ss_pred HHHHHHHHHHHHhhhchhhhHHH-HHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCC-C
Q 001249 859 QVGEILGTLIKTFKAAFLPFFDE-LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDE-N 936 (1114)
Q Consensus 859 ~~~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~-~ 936 (1114)
+.+..+..+.-.-..-+..++.. ....+...+ ..++ ..|..|+..+++++...-..-......++...+..+.+. +
T Consensus 654 ~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l-~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~ 731 (1133)
T KOG1943|consen 654 ATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNL-TLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSE 731 (1133)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhh-cchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchH
Confidence 33344433332222212222222 222222222 2222 568888999998875432211112235777778888776 7
Q ss_pred hhHHhhhhHHHHHHHhhcCCCchHHHHHHH-HHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCC---CHhhHHH
Q 001249 937 QDVRQAAVYGLGVCAEFGGSVVKPLVGEAL-SRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI---DAAQVVP 1012 (1114)
Q Consensus 937 ~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l-~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~---~~~~~~~ 1012 (1114)
..+|+....++|.+....- .-++++.+ +.+..... . +.....|.+.+.++.+++....... ...++..
T Consensus 732 ~~~r~g~~lal~~lp~~~i---~~~~q~~lc~~~l~~~p-~----d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e 803 (1133)
T KOG1943|consen 732 ERIRRGLILALGVLPSELI---HRHLQEKLCKLVLELLP-S----DAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRE 803 (1133)
T ss_pred HHHHHHHHHHHccCcHHhh---chHHHHHHHHHHhccCc-c----cccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 8888888888887753321 12233333 22222221 1 1156889999999999998866322 3678888
Q ss_pred HHHhcCCC-----CCcHH--HHHHHHHHHHHH
Q 001249 1013 AWLNCLPI-----KGDLI--EAKIVHEQLCSM 1037 (1114)
Q Consensus 1013 ~~l~~Lp~-----~~d~~--e~~~~~~~l~~l 1037 (1114)
.+++.|-. +.|.. .++.++.++..+
T Consensus 804 ~LL~~lddYttd~rGDVGswVReaAm~al~~~ 835 (1133)
T KOG1943|consen 804 TLLNALDDYTTDSRGDVGSWVREAAMKALSSL 835 (1133)
T ss_pred HHHHHHhhcccccCccHHHHHHHHHHHHHHhh
Confidence 88888742 34433 345566665554
No 58
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.07 E-value=3.4e-08 Score=122.11 Aligned_cols=273 Identities=20% Similarity=0.225 Sum_probs=186.9
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 001249 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHL 185 (1114)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l 185 (1114)
..|++.|.+ +++.||+.++..++.+.. ++.++.|.+.+.++++.+|..++..|..+.+..+..
T Consensus 624 ~~L~~~L~D-~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~-------- 686 (897)
T PRK13800 624 AELAPYLAD-PDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA-------- 686 (897)
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch--------
Confidence 356666765 799999999999886531 668899999999999999999999998875433221
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH
Q 001249 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1114)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 265 (1114)
+.+...|.++ ++.||..|+.+|..+-.. .. + .+...+.++++.+|..++..|..+-. .
T Consensus 687 -~~L~~~L~~~-d~~VR~~A~~aL~~~~~~-----~~-------~----~l~~~L~D~d~~VR~~Av~aL~~~~~--~-- 744 (897)
T PRK13800 687 -PALRDHLGSP-DPVVRAAALDVLRALRAG-----DA-------A----LFAAALGDPDHRVRIEAVRALVSVDD--V-- 744 (897)
T ss_pred -HHHHHHhcCC-CHHHHHHHHHHHHhhccC-----CH-------H----HHHHHhcCCCHHHHHHHHHHHhcccC--c--
Confidence 3455667776 999999999988875311 11 1 23345678999999999999887522 1
Q ss_pred HHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCC
Q 001249 266 LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETE 345 (1114)
Q Consensus 266 ~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 345 (1114)
+.++..+. +.+..+|..+...+..+... .+ ..++.+...+.+.
T Consensus 745 ---------~~l~~~l~--D~~~~VR~~aa~aL~~~~~~---~~-----------~~~~~L~~ll~D~------------ 787 (897)
T PRK13800 745 ---------ESVAGAAT--DENREVRIAVAKGLATLGAG---GA-----------PAGDAVRALTGDP------------ 787 (897)
T ss_pred ---------HHHHHHhc--CCCHHHHHHHHHHHHHhccc---cc-----------hhHHHHHHHhcCC------------
Confidence 11233343 45789999998888776541 11 1133344433221
Q ss_pred CccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh
Q 001249 346 DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN 425 (1114)
Q Consensus 346 ~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~ 425 (1114)
+ ..+...++..|+..-. . +.+.+.+...+.+++|.+|.+|+.+|+.+.. +..++.+..
T Consensus 788 -----d---~~VR~aA~~aLg~~g~-~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~ 845 (897)
T PRK13800 788 -----D---PLVRAAALAALAELGC-P---PDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVE 845 (897)
T ss_pred -----C---HHHHHHHHHHHHhcCC-c---chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHH
Confidence 1 1122334444443322 2 1223446667889999999999999987642 234578888
Q ss_pred cCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHH
Q 001249 426 SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1114)
Q Consensus 426 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~ 487 (1114)
.|+|+++.||..|.++|+.+. . -+...+.|...++| .++.||..|..+|..
T Consensus 846 ~L~D~~~~VR~~A~~aL~~~~--~--------~~~a~~~L~~al~D-~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 846 ALTDPHLDVRKAAVLALTRWP--G--------DPAARDALTTALTD-SDADVRAYARRALAH 896 (897)
T ss_pred HhcCCCHHHHHHHHHHHhccC--C--------CHHHHHHHHHHHhC-CCHHHHHHHHHHHhh
Confidence 899999999999999999861 1 12456677788888 899999999999863
No 59
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.01 E-value=3.7e-09 Score=89.05 Aligned_cols=94 Identities=26% Similarity=0.350 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC
Q 001249 393 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (1114)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~ 472 (1114)
.|.+++.+|++++.+.++.+.++++.|++.++.++.|++++||+.||.+|..+++..++.+ -.+++++++.+++.+.|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D- 79 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSAD- 79 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-
Confidence 5899999999999999999999999999999999999999999999999999999998888 57999999999999999
Q ss_pred CChhHHHHHHHHHHHhh
Q 001249 473 QNPRVQAHAASAVLNFS 489 (1114)
Q Consensus 473 ~~~~v~~~a~~al~~l~ 489 (1114)
++++||.+| ..|.+++
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999998877 4444443
No 60
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=98.99 E-value=1.6e-07 Score=93.45 Aligned_cols=397 Identities=14% Similarity=0.179 Sum_probs=238.1
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCC
Q 001249 59 LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE 138 (1114)
Q Consensus 59 ~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~ 138 (1114)
+.|.+-+- +.+-+....|..-+|+.+++. .-+.+.+-....+...+.+.+......-.+-.++=++..|++.....
T Consensus 74 p~lt~~l~-SdDie~q~qav~kFR~~LS~E---~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 74 PQLTQQLF-SDDIEQQLQAVYKFRKLLSKE---TSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHHhccc---cCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 44444443 345666677778899998875 23445566666777888888864334445667888999998864332
Q ss_pred CC---chhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHH--HHHHHHHHhhcCC-CChHHHHHHHHHHHHH
Q 001249 139 NG---WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK--HLHAVFLNCLTNS-NNPDVKIAALNAVINF 212 (1114)
Q Consensus 139 ~~---w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l 212 (1114)
.. -..-+|.+++++.+++.++|+.+.-+|+.++.+... .+.++- ..+..++..+.+. .+..+-..+...|+++
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 21 146789999999999999999999999999876432 222221 1222333333333 2345566788888888
Q ss_pred HHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCCcchhHH
Q 001249 213 IQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTR 291 (1114)
Q Consensus 213 ~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~~~~~vr 291 (1114)
...-..+.++..... .+..|..++.+.|+++...+|+++..+.....+.+...++ .+..-++.++.++ +..+.
T Consensus 229 cRGknP~P~w~~isq----alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~--sa~iq 302 (526)
T COG5064 229 CRGKNPPPDWSNISQ----ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE--SAKIQ 302 (526)
T ss_pred hCCCCCCCchHHHHH----HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc--ccccc
Confidence 876433335554444 4455666666789999999999998887655444433322 1112222222211 11111
Q ss_pred HHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC
Q 001249 292 HLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG 371 (1114)
Q Consensus 292 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~ 371 (1114)
.-|+..++.++. ..|+ ... .+ -..|
T Consensus 303 tPalR~vGNIVT-----------------------------G~D~--------------QTq-------vi----I~~G- 327 (526)
T COG5064 303 TPALRSVGNIVT-----------------------------GSDD--------------QTQ-------VI----INCG- 327 (526)
T ss_pred CHHHHhhcCeee-----------------------------cCcc--------------cee-------hh----eecc-
Confidence 111111111111 0010 000 00 0111
Q ss_pred CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhh-
Q 001249 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL- 449 (1114)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~- 449 (1114)
.++++...++++.-..|..+++.++.+..|..+.+...++ .++|.++..|...+-.+|..|||+++....+.
T Consensus 328 ------~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~ 401 (526)
T COG5064 328 ------ALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL 401 (526)
T ss_pred ------cHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3344555677887899999999999999998877766665 58899999999999999999999999887654
Q ss_pred -chhHHhhh--hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc------cc---cCchH--HHHHHHHHHhhcC
Q 001249 450 -GPDLQNQF--HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE------IL---TPYLD--GIVSKLLVLLQNG 515 (1114)
Q Consensus 450 -~~~~~~~~--~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~------~l---~~~l~--~il~~L~~~l~~~ 515 (1114)
.|++ -.| ...++..|+..|.- .+.++-+-+..++.+++..-... .+ ..|.+ ..|..+..+-++.
T Consensus 402 ~~PD~-iryLv~qG~IkpLc~~L~~-~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~ 479 (526)
T COG5064 402 NRPDI-IRYLVSQGFIKPLCDLLDV-VDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSV 479 (526)
T ss_pred CCchH-HHHHHHccchhHHHHHHhc-cCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhcc
Confidence 2333 233 34567777777776 33445555677777776542211 11 11222 2355555555556
Q ss_pred ChhHHHHHHHHHHH
Q 001249 516 KQMVQEGALTALAS 529 (1114)
Q Consensus 516 ~~~v~~~al~~l~~ 529 (1114)
+..+-..|++.+..
T Consensus 480 n~~iy~KAYsIIe~ 493 (526)
T COG5064 480 NRTIYDKAYSIIEK 493 (526)
T ss_pred ccHHHHHHHHHHHH
Confidence 66666666555443
No 61
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=7e-06 Score=91.95 Aligned_cols=428 Identities=15% Similarity=0.229 Sum_probs=256.7
Q ss_pred CchhhHHHHHH----hhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001249 140 GWPELLPFMFQ----CVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1114)
Q Consensus 140 ~w~~ll~~l~~----~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1114)
.-.|++-.+.+ -+++++.-+...|+-+++.++.. + ....+.|-+.+.+++. ++-+|+.|+-|...++..
T Consensus 100 E~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~---E---mardlapeVe~Ll~~~-~~~irKKA~Lca~r~irK 172 (866)
T KOG1062|consen 100 ERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---E---MARDLAPEVERLLQHR-DPYIRKKAALCAVRFIRK 172 (866)
T ss_pred cchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---H---HhHHhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHc
Confidence 33455544444 44566666777788888877642 2 3456667777778886 999999999999999986
Q ss_pred cCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchH---HHHHHHHHHHHHHHHHhccC--------
Q 001249 216 LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR---FLRRQLVDVVGSMLQIAEAE-------- 284 (1114)
Q Consensus 216 ~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~l~~~ll~~~~~~-------- 284 (1114)
.+ +++..++......+.+.+..+...++..+.++++..++ .|++.++.++..+-++....
T Consensus 173 ~P---------~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~ 243 (866)
T KOG1062|consen 173 VP---------DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVH 243 (866)
T ss_pred Cc---------hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCcc
Confidence 42 23345555556666677888888889999999988554 45555555555554443221
Q ss_pred -CcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHH
Q 001249 285 -SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLD 363 (1114)
Q Consensus 285 -~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~ 363 (1114)
-.++-+....+.++.-+.+.. + +.......++. +.....+.. -.....+-.+|+.
T Consensus 244 gi~dPFLQi~iLrlLriLGq~d---~----daSd~M~DiLa---qvatntdss--------------kN~GnAILYE~V~ 299 (866)
T KOG1062|consen 244 GISDPFLQIRILRLLRILGQND---A----DASDLMNDILA---QVATNTDSS--------------KNAGNAILYECVR 299 (866)
T ss_pred CCCchHHHHHHHHHHHHhcCCC---c----cHHHHHHHHHH---HHHhccccc--------------ccchhHHHHHHHH
Confidence 023345566666666665531 1 11112222222 222211100 0111223455666
Q ss_pred HHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 001249 364 RLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIG 443 (1114)
Q Consensus 364 ~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~ 443 (1114)
.+....+...+.......+-.++.+.+-+.|+.|+..|..++..-+.....| -..++.+|+|+++.+|..|+..+-
T Consensus 300 TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH----r~tIleCL~DpD~SIkrralELs~ 375 (866)
T KOG1062|consen 300 TIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH----RSTILECLKDPDVSIKRRALELSY 375 (866)
T ss_pred HHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHH
Confidence 6665555455666677788888889999999999999998887665544444 356677899999999999998886
Q ss_pred HhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHH
Q 001249 444 QLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGA 523 (1114)
Q Consensus 444 ~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~a 523 (1114)
.+.. ...+..++..++..|.. .++..+....+-+..+++.+.++. .-|++.++ +.+......|+..+
T Consensus 376 ~lvn-------~~Nv~~mv~eLl~fL~~-~d~~~k~~~as~I~~laEkfaP~k-~W~idtml----~Vl~~aG~~V~~dv 442 (866)
T KOG1062|consen 376 ALVN-------ESNVRVMVKELLEFLES-SDEDFKADIASKIAELAEKFAPDK-RWHIDTML----KVLKTAGDFVNDDV 442 (866)
T ss_pred HHhc-------cccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHhcCCcc-hhHHHHHH----HHHHhcccccchhh
Confidence 6653 34567788888888887 678888999999999998887653 34555444 44445555566666
Q ss_pred HHHHHHHHHhhhhhhhhhH-hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHh--c--h-hhhhhhHHHHHHHHHH
Q 001249 524 LTALASVADSSQEHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV--G--K-DKFRDDAKQVMEVLMS 597 (1114)
Q Consensus 524 l~~l~~l~~~~~~~~~~~~-~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~--~--~-~~f~~~~~~i~~~l~~ 597 (1114)
...+-.++.....+...|. .++...+..... .+-+...+-..+..|||.-+.-+ | . +....--..++..+-.
T Consensus 443 ~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~--~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~ 520 (866)
T KOG1062|consen 443 VNNLLRLIANAFQELHEYAVLRLYLALSEDTL--LDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEK 520 (866)
T ss_pred HHHHHHHHhcCCcchhhHHHHHHHHHHhhhhh--hhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHH
Confidence 6665555544422222221 112221111100 01122334555788998877321 1 1 1112223455555555
Q ss_pred HhcCCCCCCCchhhHHHHHHHHHHHHhccC
Q 001249 598 LQGSQMETDDPTTSYMLQAWARLCKCLGQD 627 (1114)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 627 (1114)
+.... ..+...+.+++.++..+...++..
T Consensus 521 v~~~~-~s~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 521 VLMSH-SSDSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred HHHhc-cchHHHHHHHHHHHHHHHhhcccc
Confidence 43322 233457888888877776666543
No 62
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.93 E-value=2.3e-07 Score=107.55 Aligned_cols=302 Identities=18% Similarity=0.241 Sum_probs=192.9
Q ss_pred hHHHHHHhhcC-CChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCc--c
Q 001249 144 LLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS--A 220 (1114)
Q Consensus 144 ll~~l~~~~~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~ 220 (1114)
+++.+..++++ ...+.|..|+.+|..+...+.++. .++.++|.++.++.|+ ..+||..|+.++..++....+. .
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCcc
Confidence 45666666665 345677889999999988876653 4889999999999997 9999999999999998876532 2
Q ss_pred hHhHHHhhHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhcc-CCcchhHHHHHHHHH
Q 001249 221 DRDRFQDLLPLMMRTLTESLNN-GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA-ESLEEGTRHLAIEFV 298 (1114)
Q Consensus 221 ~~~~~~~l~p~ll~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~-~~~~~~vr~~a~~~l 298 (1114)
+...|.+ .++..|..++.+ ....+|.....++..++.....++.--. . +...+. .+.+.+
T Consensus 500 daniF~e---YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q-~-----~~~~g~~n~~nse--------- 561 (1431)
T KOG1240|consen 500 DANIFPE---YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQ-E-----LRQAGMLNDPNSE--------- 561 (1431)
T ss_pred cchhhHh---hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHH-H-----HHhcccccCcccc---------
Confidence 2333443 455566666665 3445677777888888876655432111 0 111100 111111
Q ss_pred HHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHH
Q 001249 299 ITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVA 378 (1114)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l 378 (1114)
+..+ +...... .-+.+.+..++..|.... +.....+-.+.+..|+..+|...--..+
T Consensus 562 -t~~~-----~~~~~~~-~~L~~~V~~~v~sLlsd~----------------~~~Vkr~Lle~i~~LC~FFGk~ksND~i 618 (1431)
T KOG1240|consen 562 -TAPE-----QNYNTEL-QALHHTVEQMVSSLLSDS----------------PPIVKRALLESIIPLCVFFGKEKSNDVI 618 (1431)
T ss_pred -cccc-----cccchHH-HHHHHHHHHHHHHHHcCC----------------chHHHHHHHHHHHHHHHHhhhcccccch
Confidence 0000 0000001 111112222222111110 1123344555677788888866666778
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhh
Q 001249 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1114)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1114)
++++..++++.+|..|-|-+..+.-++-..+.. ..-+-++|.+.++|.|+.+.|-..|+.++.-+++.- .+.+.++
T Consensus 619 LshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v 694 (1431)
T KOG1240|consen 619 LSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAV 694 (1431)
T ss_pred HHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHH
Confidence 888889999999999988776666544322210 012357899999999999999999999999988742 2335667
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001249 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1114)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1114)
-+++..+...|-. |+.-+|.++|..|......++.
T Consensus 695 ~~i~~~v~PlL~h-PN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 695 KDILQDVLPLLCH-PNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHHhhhhheeC-chHHHHHHHHHHHHHHHhhhhh
Confidence 7777777777777 8999999999999888876653
No 63
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=0.00058 Score=82.35 Aligned_cols=143 Identities=26% Similarity=0.403 Sum_probs=116.8
Q ss_pred HHHHHHHHcC--CChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHH
Q 001249 24 FETLISHLMS--TSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (1114)
Q Consensus 24 l~~ll~~~~s--~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~ 101 (1114)
+...+-..++ ++++.|.+|.+.+.+++. .|+.+ .....++..+.++.+|.+|..+|-+.++.+ |..++.+.+
T Consensus 12 lldavv~~~~~~~s~~~r~eA~~~l~~lke-~~~~~-~~~~~iL~~s~~~~~k~f~Lqlle~vik~~----W~~~~~~~r 85 (1041)
T KOG2020|consen 12 LLDAVVVTLNPEGSNEERGEAQQILEELKE-EPDSW-LQVYLILKLSTNPILKYFALQLLENVIKFR----WNSLPVEER 85 (1041)
T ss_pred HHHhHHHHhCcccchHHHHHHHHHHHHHHh-CcchH-HHHHHHHhccCCchhheeeHHHHHHHHHHh----cccCCcccc
Confidence 3333444444 478899999999999999 78864 556677777889999999999999999998 999999999
Q ss_pred HHHHHHHHHHHhh----c----hhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhh
Q 001249 102 SSLKSMLLQSIQL----E----SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (1114)
Q Consensus 102 ~~i~~~ll~~l~~----e----~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~ 173 (1114)
..+|...+..... + ....++++++.++-.+++.++| ..||+++|.+.+.... +...++.++.++..+.+.
T Consensus 86 ~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~~-s~~~~el~m~Il~lLsEd 163 (1041)
T KOG2020|consen 86 VGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSKT-SETVCELSMIILLLLSEE 163 (1041)
T ss_pred HHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhhc-CcccchHHHHHHHHHHHH
Confidence 9999998887653 1 3566889999999999999999 8999999999998873 445777888888888776
Q ss_pred h
Q 001249 174 I 174 (1114)
Q Consensus 174 ~ 174 (1114)
+
T Consensus 164 v 164 (1041)
T KOG2020|consen 164 V 164 (1041)
T ss_pred H
Confidence 3
No 64
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.91 E-value=9.1e-08 Score=98.90 Aligned_cols=189 Identities=21% Similarity=0.327 Sum_probs=137.4
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhc-----HHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHH
Q 001249 380 EQLPAYLAAPEWQKHHAALIALAQIAEGC-----AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1114)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~-----~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1114)
..+...-.+.+|..|..|+.-+..++.+. .+.+...+..++..+...+.|....|...|+.+++.++..++..+
T Consensus 10 ~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~- 88 (228)
T PF12348_consen 10 AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF- 88 (228)
T ss_dssp TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG-
T ss_pred HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH-
Confidence 33434446789999999999999998876 234445566777899999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHH-HHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001249 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI-VSKLLVLLQNGKQMVQEGALTALASVADS 533 (1114)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i-l~~L~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1114)
.++.+.++|.|++.+.+ ++..++..|..+|..+++.++ +.+.+ .+.+....++.++.+|..++..+..+...
T Consensus 89 ~~~~~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGD-SKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999 888999999999999998875 22334 67777788999999999999999999988
Q ss_pred hh---hhhhh--hHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhc
Q 001249 534 SQ---EHFQK--YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1114)
Q Consensus 534 ~~---~~~~~--~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~ 580 (1114)
.+ ..+.+ .++.+.+.+...+.+ ....+|..|-+++..+...+|
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D----~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSD----ADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTS----S-HHHHHHHHHHHHHHHHHH-
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHCC
Confidence 88 34433 357777877777654 345789999999988887777
No 65
>PRK09687 putative lyase; Provisional
Probab=98.90 E-value=4e-07 Score=95.27 Aligned_cols=230 Identities=15% Similarity=0.095 Sum_probs=163.2
Q ss_pred CChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
++.-.+..++..+.++|..+|..|-..|.++.. +.. ...+..++ ++.++.+|..|+..|..+-...
T Consensus 20 ~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--~~~-~~~l~~ll-~~~d~~vR~~A~~aLg~lg~~~---------- 85 (280)
T PRK09687 20 CKKLNDDELFRLLDDHNSLKRISSIRVLQLRGG--QDV-FRLAIELC-SSKNPIERDIGADILSQLGMAK---------- 85 (280)
T ss_pred HhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc--chH-HHHHHHHH-hCCCHHHHHHHHHHHHhcCCCc----------
Confidence 455577788888889999999999999988765 443 35556644 5778999999999999853221
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhh
Q 001249 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1114)
.........|...+..++++.||..++.++|.+..... ...+.+++.+...+.++++.+|..+..+|+.+..
T Consensus 86 ~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------ 157 (280)
T PRK09687 86 RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND------ 157 (280)
T ss_pred cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------
Confidence 11223334455554566899999999999998754211 2347788888888889999999999999975531
Q ss_pred hhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001249 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1114)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l 258 (1114)
+..++.+...++++ ++.||..|+.+|+.+ . .. .. .....|...+.+.++++|..+...|+.+
T Consensus 158 ----~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~-~-~~---~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ----EAAIPLLINLLKDP-NGDVRNWAAFALNSN-K-YD---NP--------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ----HHHHHHHHHHhcCC-CHHHHHHHHHHHhcC-C-CC---CH--------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 24557788888887 899999999999987 1 11 11 2334455556788999999999999875
Q ss_pred HccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHH
Q 001249 259 AGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLA 302 (1114)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~ 302 (1114)
-. ...++.+++.+.+ ..+|..+++.++.+.
T Consensus 220 ~~----------~~av~~Li~~L~~----~~~~~~a~~ALg~ig 249 (280)
T PRK09687 220 KD----------KRVLSVLIKELKK----GTVGDLIIEAAGELG 249 (280)
T ss_pred CC----------hhHHHHHHHHHcC----CchHHHHHHHHHhcC
Confidence 33 2456666666643 236766766666543
No 66
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=0.00069 Score=79.96 Aligned_cols=159 Identities=13% Similarity=0.109 Sum_probs=103.8
Q ss_pred chhhHHHHHHhhcCCChhh-HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhc-CC
Q 001249 141 WPELLPFMFQCVSSDSVKL-QESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL-TS 218 (1114)
Q Consensus 141 w~~ll~~l~~~~~~~~~~~-r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~-~~ 218 (1114)
.+.++..+++-+.+..+.. ..++...++.+.....+.+....-.-+..|+..+... +...|.+.+.++++++... .+
T Consensus 268 ~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~e-s~~lRnavlei~~n~V~~~l~d 346 (1251)
T KOG0414|consen 268 SVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSE-SYTLRNAVLEICANLVASELRD 346 (1251)
T ss_pred cHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHhcc
Confidence 4778888888877665544 3344555555555544443333334445555666665 8999999999999887653 22
Q ss_pred cchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 001249 219 SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFV 298 (1114)
Q Consensus 219 ~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l 298 (1114)
....+....+-..+++.+.+.+.+-++-+|..++.+|..+++......+ ....++...+..+. |-+.-||..|+..+
T Consensus 347 ~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~-~~~eV~~la~grl~--DkSslVRk~Ai~Ll 423 (1251)
T KOG0414|consen 347 EELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLG-SRTEVLELAIGRLE--DKSSLVRKNAIQLL 423 (1251)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCcc-HHHHHHHHHhcccc--cccHHHHHHHHHHH
Confidence 2212233333335888888888888999999999999999876543322 23455554454443 33567999999999
Q ss_pred HHHHH
Q 001249 299 ITLAE 303 (1114)
Q Consensus 299 ~~l~~ 303 (1114)
..+..
T Consensus 424 ~~~L~ 428 (1251)
T KOG0414|consen 424 SSLLD 428 (1251)
T ss_pred HHHHh
Confidence 98887
No 67
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.73 E-value=0.0014 Score=75.42 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=93.7
Q ss_pred chhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCCC---hhHHhhhhHHHHHH
Q 001249 874 AFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDEN---QDVRQAAVYGLGVC 950 (1114)
Q Consensus 874 ~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~---~~vr~~a~~~lg~l 950 (1114)
...|.+..++|.++..+ .-++...|..++.++..+....+.-...|++.++|.++..-.|.+ -.||..|..|++.+
T Consensus 902 vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL 980 (1030)
T KOG1967|consen 902 VLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNAL 980 (1030)
T ss_pred hhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH
Confidence 35677788888888776 345667788999999998888877777799999999998877766 58999999999999
Q ss_pred HhhcCC-CchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHH
Q 001249 951 AEFGGS-VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSAL 994 (1114)
Q Consensus 951 ~~~~~~-~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al 994 (1114)
.+..|. ...||-+++++.|.+.|.+++ +-+|.-|+.|=
T Consensus 981 ~~~~P~~~l~~fr~~Vl~al~k~LdDkK------RlVR~eAv~tR 1019 (1030)
T KOG1967|consen 981 TRRLPTKSLLSFRPLVLRALIKILDDKK------RLVRKEAVDTR 1019 (1030)
T ss_pred hccCCCcccccccHHHHHHhhhccCcHH------HHHHHHHHHHh
Confidence 997774 578899999999999998774 67788777663
No 68
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=0.00018 Score=79.85 Aligned_cols=221 Identities=12% Similarity=0.173 Sum_probs=142.4
Q ss_pred CHHHHHHHHHHHHHhcccCCCCccc----------CCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC
Q 001249 70 HPEARAMAAVLLRKLLTRDDSFLWP----------RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN 139 (1114)
Q Consensus 70 ~~~~R~~A~~~Lk~~l~~~~~~~w~----------~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~ 139 (1114)
+..+-.++..++|+-++.. +.+. -.+++.-..+-.-++..|.+ +.+-+|..+.-++..++-. +| +
T Consensus 103 ~tdvlmL~tn~~rkdl~S~--n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~s-skpYvRKkAIl~lykvFLk-YP-e 177 (877)
T KOG1059|consen 103 DTDVLMLTTNLLRKDLNSS--NVYEVGLALSGLSCIVTPDLARDLADDVFTLLNS-SKPYVRKKAILLLYKVFLK-YP-E 177 (877)
T ss_pred CccHHHHHHHHHHHHhccC--ccchhhheecccccccCchhhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHh-hh-H
Confidence 4445555666666665542 1221 14577667777888888887 6888999988888887764 34 4
Q ss_pred CchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHH----------------HHHHHHHHhhcCCCChHHHH
Q 001249 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK----------------HLHAVFLNCLTNSNNPDVKI 203 (1114)
Q Consensus 140 ~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~----------------~l~~~l~~~l~~~~~~~vr~ 203 (1114)
....-+|.|.+-+.++|+.+..+|..++..++..-+..+.+..+ .++.+|.. |.-- .|..+.
T Consensus 178 Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~a-Ltpl-EPRLgK 255 (877)
T KOG1059|consen 178 ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAA-LTPL-EPRLGK 255 (877)
T ss_pred hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhh-cccc-Cchhhh
Confidence 45566889999999999999999999999999876654222111 11111111 1110 122221
Q ss_pred -------------HHHHHHHHHHHhcCCcc---hHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHH
Q 001249 204 -------------AALNAVINFIQCLTSSA---DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR 267 (1114)
Q Consensus 204 -------------~a~~~l~~l~~~~~~~~---~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 267 (1114)
.|...+..++..+-... ....-...+...++-|...+.+.|+..+..++-++..++.++|....
T Consensus 256 KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq 335 (877)
T KOG1059|consen 256 KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ 335 (877)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH
Confidence 23333443333321100 00001223446677777778888999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHH
Q 001249 268 RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1114)
Q Consensus 268 ~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1114)
.|-+-++. ++. |.|+.+|..|++++..++.
T Consensus 336 a~kdlIlr----cL~--DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 336 AHKDLILR----CLD--DKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HhHHHHHH----Hhc--cCCchhHHHHHHHHHHHhh
Confidence 87655554 333 4578999999999999887
No 69
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.68 E-value=0.00096 Score=87.02 Aligned_cols=562 Identities=16% Similarity=0.237 Sum_probs=288.3
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHH---h
Q 001249 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ---N 455 (1114)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~ 455 (1114)
...+.+++.+..-..|++|...+..++...+..+-+++..++..++..+.|+++.+|..|+.++.......+.... .
T Consensus 136 ~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~~~~~~ 215 (2341)
T KOG0891|consen 136 VKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQREAKLKP 215 (2341)
T ss_pred HHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhccchhhh
Confidence 3334444445555678999999999999999999999999999999999999999999999999887665543320 0
Q ss_pred hhhhhhHHHHHhhccCCCC------------------h------hHHHHHHHHHH---------------HhhhcCCccc
Q 001249 456 QFHPQVLPALAGAMDDFQN------------------P------RVQAHAASAVL---------------NFSENCTPEI 496 (1114)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~------------------~------~v~~~a~~al~---------------~l~~~~~~~~ 496 (1114)
..+...+...-..+.. +. + ..+...+.... .+....+...
T Consensus 216 ~~~~rcvd~~~~~l~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~~~ 294 (2341)
T KOG0891|consen 216 QWYQRCVDEARHGLSS-DGVKIHASLLVYNELLRISDPFLEKYDSTCVRQAKGKLLKSIVIRMTLSQILPLLAAFNPAKF 294 (2341)
T ss_pred HHHHHHHHhccccccc-hHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccHHHHHHhccHHHhhhhhhhh
Confidence 1111222211111211 00 0 01111110000 0000000000
Q ss_pred ccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHH
Q 001249 497 LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1114)
Q Consensus 497 l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1114)
-..|+...+..++..+. .++..++..++.++-+.+..+.+|...+...+.+.+....-...+. -...+.|++..+
T Consensus 295 ~~~~l~~~~~~~l~~~~----~~~~~~~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~ 369 (2341)
T KOG0891|consen 295 QVKYLHTEMDHLLSILR----KEKTRAFVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKF-EKSVFTCIGLLA 369 (2341)
T ss_pred HHHHHHHHHHHHHHhhh----ccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhc-chhHHHHHHHHh
Confidence 11345555556655555 2226788889999999999998888776665555443311111111 122577888888
Q ss_pred HHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccC----C----CC
Q 001249 577 MAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQL----K----PD 648 (1114)
Q Consensus 577 ~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~----~----~~ 648 (1114)
.+++...|......++..+.. . .......+++-.++..++ |..+.+.+.++..... . +.
T Consensus 370 ~a~~~~~~~~~~~~il~~~~~---~------~~~~~l~e~l~~l~~rl~----~l~~~i~~rll~~~~~vl~~~a~~~~~ 436 (2341)
T KOG0891|consen 370 SALGPADQKDLNKDILEQMFK---C------TLSDSLLERLFILSQRIP----KLGQSIQDRLLNMTSQVLSGKAFIQPG 436 (2341)
T ss_pred hccCHHHHHhHHHHHHHHHhc---C------CchHHHHHHHHHHHHhcc----chhhHHHHHHHHHHHHHHhCccccCcc
Confidence 888866554444555554432 1 112344455555555544 3334444444433311 1 10
Q ss_pred c-ccc---CCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhccccc
Q 001249 649 V-TIT---SADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY 724 (1114)
Q Consensus 649 ~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~ 724 (1114)
. .+. .-.-. ...+ .+ ...+ +-+.|+.+++.+... +.....++.++++.... .
T Consensus 437 ~~~vl~~~~~p~~-~~~~-~~-------------~~~~----~~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~----~ 492 (2341)
T KOG0891|consen 437 QFTVLPKLAIPKA-ILQK-TG-------------DSTD----DIQLAFKTLGGFKFS-GYSLTLFVQQCVDSYLE----A 492 (2341)
T ss_pred ccCccchhcccch-hhhh-cc-------------cccH----HHHHHHHHHhhhhhh-hhhHHHHHHHHHHHHHh----c
Confidence 0 000 00000 0000 00 0000 123466666666433 22233344444444332 3
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCC
Q 001249 725 FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLD 804 (1114)
Q Consensus 725 ~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 804 (1114)
.++++|+.+..++..++.....+-++ .+. ..+.+..++..++.....++++.++..++.++.+.... ....
T Consensus 493 ~~~e~r~~~~l~~~~ll~~~~~~~~~------~~~-~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~--~laQ 563 (2341)
T KOG0891|consen 493 DDSEIRKNAALTCCELLKYDIICSQT------SPH-ALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDA--QLAQ 563 (2341)
T ss_pred ccHHHHHHHHHHHHHHHhhhhhhhcc------cch-HHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhh--hhcC
Confidence 47899999988888877655432221 111 11345555666666666677777776666666511110 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCC--CChHhh--hhhh--hhhHhHH--HHHHHHHHHHHHHHHHhhhchh
Q 001249 805 EGQVRSIVDEIKQVITASSSRKRERAERAKAED--FDAEES--ELIK--EENEQEE--EVFDQVGEILGTLIKTFKAAFL 876 (1114)
Q Consensus 805 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~d~~~~--~~~~--e~~~~~~--~~~~~~~~~l~~l~~~~~~~~~ 876 (1114)
+..+...+..+..-+.................+ ..-+.. -.+. ..-+... .+....+.....++........
T Consensus 564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~ 643 (2341)
T KOG0891|consen 564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLIS 643 (2341)
T ss_pred chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHH
Confidence 111100000000000000000000000000000 000000 0000 0000000 0111123334444444444556
Q ss_pred hhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccC-CChhHHhhhhHHHHHHHhhcC
Q 001249 877 PFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACND-ENQDVRQAAVYGLGVCAEFGG 955 (1114)
Q Consensus 877 ~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~-~~~~vr~~a~~~lg~l~~~~~ 955 (1114)
||.+.++.+++..+.+ .+..+-..++.++++++...|.....+.+..++.+.+.+.+ +...-|+++..++|.+....+
T Consensus 644 ~~v~~~l~~~~~~~~~-~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~ 722 (2341)
T KOG0891|consen 644 PYVGPILLVLLPKLQD-PSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTG 722 (2341)
T ss_pred hhcCchHHHHHHHHhc-cchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccc
Confidence 7777766666666643 33345566788999999888877667778888999988888 557888899999999999988
Q ss_pred CCchHH--HHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHH
Q 001249 956 SVVKPL--VGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKIC 998 (1114)
Q Consensus 956 ~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~ 998 (1114)
-.+.|+ +|.++..|.+.+..+- ...+|.-++..+|...
T Consensus 723 ~~v~p~~~~P~ll~~l~~~~~te~-----~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 723 YVVDPYLDYPELLDILINILKTEQ-----SSTIRREAIRLLGLLG 762 (2341)
T ss_pred eEecccccChHHHHHHHHHHhHhh-----hhHHHHHHHHHhhhhc
Confidence 777775 5778888887775432 3456666666666443
No 70
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=0.0012 Score=74.67 Aligned_cols=421 Identities=16% Similarity=0.183 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhh
Q 001249 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1114)
+..-.+.+.+-+-|.+ ++.-+--.+--+++.|+.. .--+++.|.+.+++++.++.+|.-|..+...+....++.
T Consensus 103 dvllLltNslknDL~s-~nq~vVglAL~alg~i~s~----EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l- 176 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNS-SNQYVVGLALCALGNICSP----EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL- 176 (866)
T ss_pred HHHHHHHHHHHhhccC-CCeeehHHHHHHhhccCCH----HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH-
Confidence 3333344444444443 2333333333344444332 345899999999999999999999999999998887764
Q ss_pred hhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC-----------CHHH
Q 001249 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-----------NEAT 247 (1114)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~-----------~~~~ 247 (1114)
...+++.+.+.|.+. +..|-.+++..+..++..- ......|..++|.++..|.+....+ +|=.
T Consensus 177 ---~e~f~~~~~~lL~ek-~hGVL~~~l~l~~e~c~~~--~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFL 250 (866)
T KOG1062|consen 177 ---VEHFVIAFRKLLCEK-HHGVLIAGLHLITELCKIS--PDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFL 250 (866)
T ss_pred ---HHHhhHHHHHHHhhc-CCceeeeHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHH
Confidence 556667778888886 8888889998888888753 2345678889999999999877543 4445
Q ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHH-HHHHHHHHHHhhhccchhhhcchhhHHHHHHHH
Q 001249 248 AQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHL-AIEFVITLAEARERAPGMMRKLPQFINRLFAIL 326 (1114)
Q Consensus 248 ~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l 326 (1114)
....++.|.-+....++. ...+.+++ -+++.+.+.+..+-.+ -.|++.++..-+. ......--+..+
T Consensus 251 Qi~iLrlLriLGq~d~da-Sd~M~DiL---aqvatntdsskN~GnAILYE~V~TI~~I~~--------~~~LrvlainiL 318 (866)
T KOG1062|consen 251 QIRILRLLRILGQNDADA-SDLMNDIL---AQVATNTDSSKNAGNAILYECVRTIMDIRS--------NSGLRVLAINIL 318 (866)
T ss_pred HHHHHHHHHHhcCCCccH-HHHHHHHH---HHHHhcccccccchhHHHHHHHHHHHhccC--------CchHHHHHHHHH
Confidence 555555555544432211 11111111 1222222222211111 1122222222100 011112222222
Q ss_pred HHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 001249 327 MSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE 406 (1114)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~ 406 (1114)
-+.+... +...+.+|...|.++...-+ .....=-..+.+.++++|...|.-|+.....+..
T Consensus 319 gkFL~n~-----------------d~NirYvaLn~L~r~V~~d~--~avqrHr~tIleCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 319 GKFLLNR-----------------DNNIRYVALNMLLRVVQQDP--TAVQRHRSTILECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred HHHhcCC-----------------ccceeeeehhhHHhhhcCCc--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 2222221 11233344444444432221 1111112345567889999999999988888876
Q ss_pred hcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHH
Q 001249 407 GCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1114)
Q Consensus 407 ~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1114)
. ..+..++.-++.+|...++..|..+..-+..+++.+.|+- ..|++.++..+ ..-.+ .|+..+...+-
T Consensus 380 ~------~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k-~W~idtml~Vl-~~aG~----~V~~dv~~nll 447 (866)
T KOG1062|consen 380 E------SNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDK-RWHIDTMLKVL-KTAGD----FVNDDVVNNLL 447 (866)
T ss_pred c------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcc-hhHHHHHHHHH-Hhccc----ccchhhHHHHH
Confidence 5 4566777777777777788899999999999999998865 35555555444 33332 34445555555
Q ss_pred HhhhcCCcccccCchHHHHHHHHHHh------hcCChhHHHHHHHHHHHHHHhhhh-----hh-hhhHhhhhHHHHHHHh
Q 001249 487 NFSENCTPEILTPYLDGIVSKLLVLL------QNGKQMVQEGALTALASVADSSQE-----HF-QKYYDAVMPFLKAILV 554 (1114)
Q Consensus 487 ~l~~~~~~~~l~~~l~~il~~L~~~l------~~~~~~v~~~al~~l~~l~~~~~~-----~~-~~~~~~i~~~L~~~l~ 554 (1114)
.++.+...+ ...| .+.+|...+ .-....+..-+.+|||.-.+-.-. .. ..--..++..+...+.
T Consensus 448 ~LIa~~~~e-~~~y---~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~ 523 (866)
T KOG1062|consen 448 RLIANAFQE-LHEY---AVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLM 523 (866)
T ss_pred HHHhcCCcc-hhhH---HHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHH
Confidence 555554222 1222 122222211 122344566788888876632211 11 1122456667777766
Q ss_pred hccCccchhhhHHHHHHHHHHHHHhc
Q 001249 555 NATDKSNRMLRAKSMECISLVGMAVG 580 (1114)
Q Consensus 555 ~~~~~~~~~lr~~a~~~l~~i~~~~~ 580 (1114)
.... +...|+.|+.++..+....+
T Consensus 524 ~~~s--~~~tk~yal~Al~KLSsr~~ 547 (866)
T KOG1062|consen 524 SHSS--DSTTKGYALTALLKLSSRFH 547 (866)
T ss_pred hccc--hHHHHHHHHHHHHHHHhhcc
Confidence 5433 25577888877777765443
No 71
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=8.1e-05 Score=83.96 Aligned_cols=473 Identities=16% Similarity=0.166 Sum_probs=273.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHH
Q 001249 25 ETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQS 102 (1114)
Q Consensus 25 ~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~ 102 (1114)
..++.++...|-+..+--..++..+.+.+|+..+...--++.+ +.++.+|.+|...+... + -+...+
T Consensus 52 ~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l--------~---v~~i~e 120 (734)
T KOG1061|consen 52 PDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCL--------R---VDKITE 120 (734)
T ss_pred HHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeE--------e---ehHHHH
Confidence 3445556666767777778888887777887643333334443 77899999887665532 1 134566
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhh-hhhhh
Q 001249 103 SLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD-TLTPH 181 (1114)
Q Consensus 103 ~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~-~~~~~ 181 (1114)
++...+.+.+.+ .++.+|+.++.+++.+.........-..+++.|..++.++++.+...|+.+|..|.+..++ .....
T Consensus 121 y~~~Pl~~~l~d-~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l 199 (734)
T KOG1061|consen 121 YLCDPLLKCLKD-DDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLEL 199 (734)
T ss_pred HHHHHHHHhccC-CChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccc
Confidence 778888888997 5999999999999988765333234467888999999999999999999999999987654 22223
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001249 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1114)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 261 (1114)
..+++..++..++.- +.=-+... +..+..+.++.. .+.+ .+++.+...+++.++.+...+...+..+...
T Consensus 200 ~~~~~~~lL~al~ec-~EW~qi~I---L~~l~~y~p~d~-~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~ 269 (734)
T KOG1061|consen 200 NPQLINKLLEALNEC-TEWGQIFI---LDCLAEYVPKDS-REAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKY 269 (734)
T ss_pred cHHHHHHHHHHHHHh-hhhhHHHH---HHHHHhcCCCCc-hhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHH
Confidence 344555555555543 22223333 344444443321 2211 3556666666666777777777777766654
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccccc
Q 001249 262 EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS 341 (1114)
Q Consensus 262 ~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 341 (1114)
....-...+..+-+.+..++.. ..++...++.-+.-+.. +.|.+.+ .-+..++ ..- .|+-
T Consensus 270 ~~~~~~~~~~K~~~pl~tlls~---~~e~qyvaLrNi~lil~---~~p~~~~-------~~~~~Ff---~ky-nDPi--- 329 (734)
T KOG1061|consen 270 LKQVNELLFKKVAPPLVTLLSS---ESEIQYVALRNINLILQ---KRPEILK-------VEIKVFF---CKY-NDPI--- 329 (734)
T ss_pred HHHHHHHHHHHhcccceeeecc---cchhhHHHHhhHHHHHH---hChHHHH-------hHhHeee---eec-CCch---
Confidence 4443233333444444433322 23555555554444444 2332111 1111000 000 0100
Q ss_pred CCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHH
Q 001249 342 AETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLS 421 (1114)
Q Consensus 342 ~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 421 (1114)
.....-.+++..++. +..++.++.-+.++...-+..--..++.++|.++....+. ...++
T Consensus 330 -----------YvK~eKleil~~la~----~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~ 389 (734)
T KOG1061|consen 330 -----------YVKLEKLEILIELAN----DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVS 389 (734)
T ss_pred -----------hhHHHHHHHHHHHhh----HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHH
Confidence 001112345555542 4556667777777777777777778899999988754432 45666
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCch
Q 001249 422 MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL 501 (1114)
Q Consensus 422 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l 501 (1114)
.++..++-...-|.+.+...+..+...++. ..+.+++.+...+..-.+|+.|.+..|.++...+..+. .
T Consensus 390 ~lLell~~~~~yvvqE~~vvi~dilRkyP~-----~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------a 458 (734)
T KOG1061|consen 390 ILLELLETKVDYVVQEAIVVIRDILRKYPN-----KYESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN------A 458 (734)
T ss_pred HHHHHHhhcccceeeehhHHHHhhhhcCCC-----chhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc------H
Confidence 666666655555555666666666555543 23667777777776656788889999999888776642 3
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHH
Q 001249 502 DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1114)
Q Consensus 502 ~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1114)
+.+++.+.+.+.+....|+-..+.+.-.+.-..+..-...+..+++. .. .+.+...+|.+++.-...+.
T Consensus 459 ~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~---~~---~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 459 LELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPL---AT---ADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhh---hh---ccccChhhhhhHHHHHHHhh
Confidence 45667777777777777765555444333222222212222222221 11 12234467877765554443
No 72
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.65 E-value=0.0037 Score=75.84 Aligned_cols=113 Identities=14% Similarity=0.164 Sum_probs=89.1
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
..++.++..++..+.. +...+|..|..+|..+++.-+ ..+ ..+.+-..+..-+.+....||+.|+..+|..+-..+
T Consensus 812 ~sfD~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp-~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~ 887 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGE-NAIALRTKALKCLSMIVEADP-SVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP 887 (1692)
T ss_pred HhhHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcCh-Hhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH
Confidence 5677888888889987 889999999999999987633 322 345666777778888999999999999999998888
Q ss_pred hhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhc
Q 001249 536 EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1114)
Q Consensus 536 ~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~ 580 (1114)
+...+||+.+...+.. ....+|.+++..+-.+....+
T Consensus 888 e~~~qyY~~i~erIlD--------tgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 888 ELIFQYYDQIIERILD--------TGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHHHHHHHHHHhhcCC--------CchhHHHHHHHHHHHHHHhCC
Confidence 8888888887765432 235689999998888875443
No 73
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.64 E-value=7.4e-07 Score=92.15 Aligned_cols=184 Identities=19% Similarity=0.216 Sum_probs=123.6
Q ss_pred CCchhhHHHHHHHHHHHcCCCcchHHHHH-------HHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHH
Q 001249 352 SSNYSVGQECLDRLAIALGGNTIVPVASE-------QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVL 424 (1114)
Q Consensus 352 ~~~~~~a~~~l~~l~~~~~~~~~~~~l~~-------~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~ 424 (1114)
|..+..+...|..+...-.+....+.+.+ .+...++|..-.+-..|+.+++.++...+..+.++++.++|.++
T Consensus 21 W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll 100 (228)
T PF12348_consen 21 WEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLL 100 (228)
T ss_dssp HHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 33344455555555544311233333333 33345556667788899999999999988888899999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhh-HHHHHhhccCCCChhHHHHHHHHHHHhhhcCC--cccccC--
Q 001249 425 NSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV-LPALAGAMDDFQNPRVQAHAASAVLNFSENCT--PEILTP-- 499 (1114)
Q Consensus 425 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~i-l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~--~~~l~~-- 499 (1114)
..+.+.+..+|.+|..+|..+++.++ +.+.+ ++.+.....+ +++.+|..++..+..++...+ ...+..
T Consensus 101 ~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 101 KKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKS-KNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 99999999999999999999998764 22344 7777778888 999999999999999998877 333333
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhH
Q 001249 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY 542 (1114)
Q Consensus 500 ~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~ 542 (1114)
.++.+.+.+.+++.++++.||+.|-.++..+....++.....+
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 3588999999999999999999999999999888876544333
No 74
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.64 E-value=0.00075 Score=72.88 Aligned_cols=410 Identities=15% Similarity=0.140 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHhhch--hhhHHHHHHHHHHHHHhc-ccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhh
Q 001249 101 QSSLKSMLLQSIQLES--AKSISKKLCDTVSELASN-ILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (1114)
Q Consensus 101 ~~~i~~~ll~~l~~e~--~~~vr~~~~~~i~~ia~~-~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~ 177 (1114)
+..+.+-..+.+...+ .+.-|+.+..+...++.. .+|...-.+++=.+..++++.+...|+....++..+..-..+.
T Consensus 20 ~~t~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv 99 (898)
T COG5240 20 ERTLLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDV 99 (898)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhh
Confidence 3344455555555422 333455555555544443 2333344577777888899999999987777777665432222
Q ss_pred hhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001249 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE 257 (1114)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~ 257 (1114)
+ -....+.+-++...+..+|-.|++.|..++..- .++.+-..+.+..-++.+..+..++-.-..
T Consensus 100 l-----m~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~-----------tv~~~er~l~~a~Vs~~~a~~saalv~aYh 163 (898)
T COG5240 100 L-----MGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGE-----------TVYDFERYLNQAFVSTSMARRSAALVVAYH 163 (898)
T ss_pred h-----HHHHHHHHhhccCCccccccHHHHHHHHhcCcc-----------hhhhHHHHhhhhccccchhhhhhHHHHhhh
Confidence 2 122334444454423478888888887666431 122233333444445566665555433222
Q ss_pred HHccchHHHHHHHHHHHHHHHHHhccCC----------cchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001249 258 LAGTEPRFLRRQLVDVVGSMLQIAEAES----------LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1114)
Q Consensus 258 l~~~~~~~~~~~~~~l~~~ll~~~~~~~----------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1114)
+.-......+....+.-+..+.+.+.+. .+.-...-|+.++..+-+.. .+ ...+++..+
T Consensus 164 Llp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~d----km------a~lklv~hf- 232 (898)
T COG5240 164 LLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTD----KM------AQLKLVEHF- 232 (898)
T ss_pred hccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhccc----HH------HHHHHHHHh-
Confidence 2222222333333333333333322110 01111233555554443310 00 111122211
Q ss_pred HhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcC-CCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 001249 328 SMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG-GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE 406 (1114)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~ 406 (1114)
..... .....+....+......+. ..+++..+-|++..++++.--.+-..+..++..+++
T Consensus 233 ---~~n~s----------------mknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~ 293 (898)
T COG5240 233 ---RGNAS----------------MKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSE 293 (898)
T ss_pred ---hcccc----------------cccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHH
Confidence 11100 0000111111222222211 235677788999999988654555455555555544
Q ss_pred hc-HHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHH
Q 001249 407 GC-AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (1114)
Q Consensus 407 ~~-~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al 485 (1114)
.. . .+.+++.+..+...|..+....|.+|+..|.+++...+..+ ...-+.+-..+.| .+. .-+..|+
T Consensus 294 ~nv~---~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv-----~vcN~evEsLIsd-~Nr---~IstyAI 361 (898)
T COG5240 294 ENVG---SQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV-----SVCNKEVESLISD-ENR---TISTYAI 361 (898)
T ss_pred hccC---HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee-----eecChhHHHHhhc-ccc---cchHHHH
Confidence 22 2 24567778888888999999999999999999997655432 2222333344455 444 3455667
Q ss_pred HHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhh
Q 001249 486 LNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLR 565 (1114)
Q Consensus 486 ~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr 565 (1114)
..++.....+ .++.++..+...+.+-+...+.-++.++.+++...+..-.-|+ .+|...+.+. .....+
T Consensus 362 TtLLKTGt~e----~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l----~FL~~~L~~e---Gg~eFK 430 (898)
T COG5240 362 TTLLKTGTEE----TIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYL----DFLGSSLLQE---GGLEFK 430 (898)
T ss_pred HHHHHcCchh----hHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHH----HHHHHHHHhc---ccchHH
Confidence 7777765433 3566677777777776666677788888888877665444444 4444444332 234456
Q ss_pred HHHHHHHHHHHHHh
Q 001249 566 AKSMECISLVGMAV 579 (1114)
Q Consensus 566 ~~a~~~l~~i~~~~ 579 (1114)
..++++++.+....
T Consensus 431 ~~~Vdaisd~~~~~ 444 (898)
T COG5240 431 KYMVDAISDAMEND 444 (898)
T ss_pred HHHHHHHHHHHhhC
Confidence 66777776665433
No 75
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=8.1e-06 Score=82.48 Aligned_cols=386 Identities=15% Similarity=0.166 Sum_probs=225.3
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCc---hhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhh-hhHH
Q 001249 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGW---PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-PHLK 183 (1114)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w---~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~ 183 (1114)
++-.+.+ .++.+...++..+|.+|......+-. ..+=+.+.+++. +...+|..+..++..++........ .+..
T Consensus 90 vl~llqs-~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmt-d~vevqcnaVgCitnLaT~d~nk~kiA~sG 167 (550)
T KOG4224|consen 90 VLALLQS-CDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMT-DGVEVQCNAVGCITNLATFDSNKVKIARSG 167 (550)
T ss_pred HHHHHhC-cchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcC-CCcEEEeeehhhhhhhhccccchhhhhhcc
Confidence 3444555 79999999999999988754333322 333345555554 4455777788888888765322111 0122
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc-
Q 001249 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP-LMMRTLTESLNNGNEATAQEALELLIELAGT- 261 (1114)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p-~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~- 261 (1114)
.+.| +.+.-++. +..+|..+..++.++....++ .. .++. .-+.++..++.+++.+++..|+..+..++-.
T Consensus 168 aL~p-ltrLaksk-dirvqrnatgaLlnmThs~En---Rr---~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 168 ALEP-LTRLAKSK-DIRVQRNATGALLNMTHSREN---RR---VLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred chhh-hHhhcccc-hhhHHHHHHHHHHHhhhhhhh---hh---hhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH
Confidence 2333 33333444 788999999999888765421 11 1111 1344556667789999999999999877642
Q ss_pred -chHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 001249 262 -EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1114)
Q Consensus 262 -~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1114)
..+.+..--+.+++.+.+++.+ .++.++.+|--.+..++...+|.-...+ ..-+|.++..+..+.-
T Consensus 240 ~~Rk~Laqaep~lv~~Lv~Lmd~--~s~kvkcqA~lALrnlasdt~Yq~eiv~------ag~lP~lv~Llqs~~~----- 306 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALVDLMDD--GSDKVKCQAGLALRNLASDTEYQREIVE------AGSLPLLVELLQSPMG----- 306 (550)
T ss_pred HHHHHHHhcccchHHHHHHHHhC--CChHHHHHHHHHHhhhcccchhhhHHHh------cCCchHHHHHHhCcch-----
Confidence 2334444445688888887754 4688898888888888774333221111 1234555555532210
Q ss_pred cCCCCCccccCCCchhhHHHHHHHHHHHcCCCcc-hH--HHHHHHHHhhC-CCChhHHHHHHHHHHHHHhhcHHHHHHhH
Q 001249 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTI-VP--VASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1114)
Q Consensus 341 ~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~-~~--~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1114)
..--+...|+..++-+-+.+.. .. .+-|+ ...+. ..+-..+..|...|..++...........
T Consensus 307 ------------plilasVaCIrnisihplNe~lI~dagfl~pL-VrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~ 373 (550)
T KOG4224|consen 307 ------------PLILASVACIRNISIHPLNEVLIADAGFLRPL-VRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIR 373 (550)
T ss_pred ------------hHHHHHHHHHhhcccccCcccceecccchhHH-HHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHh
Confidence 0011223355555543322111 11 12222 22333 34555777888888887764433222222
Q ss_pred H-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001249 417 E-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1114)
Q Consensus 417 ~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1114)
. .-+|.+...+.|..-.||....-|+++++-. +.....+ -..++|.++....+ .+.+||..|..||.+|++....
T Consensus 374 esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nlss~v~~ 450 (550)
T KOG4224|consen 374 ESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGS-ESEEVRGNAAAALINLSSDVEH 450 (550)
T ss_pred hcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCc-cchhhcccHHHHHHhhhhhhHH
Confidence 2 3567788888898888998877788777632 2221112 34688889998888 8899999999999999876431
Q ss_pred c------cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001249 495 E------ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1114)
Q Consensus 495 ~------~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1114)
- .=.|. +.+-..|...+.+....++..+..+|..+...
T Consensus 451 YarviEawd~P~-~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 451 YARVIEAWDHPV-QGIQGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred HHHHHHHhcCcc-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 0 00122 34445555555555556666666666666544
No 76
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.61 E-value=7.2e-05 Score=84.38 Aligned_cols=368 Identities=16% Similarity=0.241 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHH-HHH
Q 001249 246 ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINR-LFA 324 (1114)
Q Consensus 246 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~-l~~ 324 (1114)
.....++.++..++.. +..+......++..+-....... +.+.....+..+..+.+...... .......|.+. ++|
T Consensus 17 ~~~~~~L~~l~~ls~~-~~i~~~~~~~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~~-~~~~~~~y~~~~lv~ 93 (415)
T PF12460_consen 17 SNYERILEALAALSTS-PQILETLSIRLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQEDK-QFEDNSWYFHRILVP 93 (415)
T ss_pred hHHHHHHHHHHHHHCC-hhHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhccccc-ccchHHHHHHhHHHH
Confidence 5566777778777753 34455555555555554443222 44555667777777776421111 01122334443 788
Q ss_pred HHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHH-hh--------C-CCC---h
Q 001249 325 ILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPA-YL--------A-APE---W 391 (1114)
Q Consensus 325 ~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l--------~-~~~---~ 391 (1114)
.++.......... .+ .+...-......+..+...++.+.--. ++..+.. ++ . +.. +
T Consensus 94 ~l~~~~~~~~~~~-------~~---~~~~~L~~~~~l~~~iv~~l~~~~q~~-~~~~~~~lf~~~~~~~~~~~~~~~~~~ 162 (415)
T PF12460_consen 94 RLFELALQASDQS-------SD---LDDRVLELLSRLINLIVRSLSPEKQQE-ILDELYSLFLSPKSFSPFQPSSSTISE 162 (415)
T ss_pred HHHHHHHhhcccc-------cc---cchHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHccccccCCCCcccccccc
Confidence 8877765432211 00 011123345556666666665322211 2222222 22 0 111 2
Q ss_pred hHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhc-CCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhc
Q 001249 392 QKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1114)
Q Consensus 392 ~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1114)
..+...... ..+..+.+ +...+....++..++.. ....++..|.+++.+++.++..+.+ .+.++.++..+...+
T Consensus 163 ~~~~~~~l~-~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~---~~~l~~~l~~~~~~~ 238 (415)
T PF12460_consen 163 QQSRLVILF-SAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD---DDDLDEFLDSLLQSI 238 (415)
T ss_pred ccccHHHHH-HHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHhhh
Confidence 333333333 33333333 21113444556555554 3445589999999999999988644 235666777766666
Q ss_pred -cCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh--------hh--
Q 001249 470 -DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE--------HF-- 538 (1114)
Q Consensus 470 -~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~--------~~-- 538 (1114)
.. ..+..+..+...+..+.+.+-.. -.|....++..|+.++.+ +.+...+..+++.+..-.++ ..
T Consensus 239 ~~~-~~~~~~~~~~~~~~Wi~KaLv~R-~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vkl 314 (415)
T PF12460_consen 239 SSS-EDSELRPQALEILIWITKALVMR-GHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKL 314 (415)
T ss_pred ccc-CCcchhHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhh
Confidence 22 34455555555555554432111 135567778888888877 56677788888887755221 11
Q ss_pred ---hhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHH
Q 001249 539 ---QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQ 615 (1114)
Q Consensus 539 ---~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 615 (1114)
.++|..++|.|.+......+. .|...+.+++.+...++++.+.++++++++++++-.+. ++..++..++.
T Consensus 315 LykQR~F~~~~p~L~~~~~~~~~~----~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~---~~~~v~~s~L~ 387 (415)
T PF12460_consen 315 LYKQRFFTQVLPKLLEGFKEADDE----IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL---PDADVLLSSLE 387 (415)
T ss_pred HHhHHHHHHHHHHHHHHHhhcChh----hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHH
Confidence 247778888888887664332 56677889999999999999999999999999985442 23347888888
Q ss_pred HHHHHHHHhccCCccchhhhhHHHHHh
Q 001249 616 AWARLCKCLGQDFLPYMSVVMPPLLQS 642 (1114)
Q Consensus 616 ~~~~l~~~~~~~~~~~l~~i~~~ll~~ 642 (1114)
++..+...-.+-+.+|+..++|.+++.
T Consensus 388 tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 388 TLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 888887777777899999999998864
No 77
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.0019 Score=72.88 Aligned_cols=551 Identities=16% Similarity=0.155 Sum_probs=272.5
Q ss_pred HHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHh----hchhh
Q 001249 43 ELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQ----LESAK 118 (1114)
Q Consensus 43 e~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~----~e~~~ 118 (1114)
++.|+++.+ +|++| ..+--..+..-.+|=.|-.+++-+.... -.-+.+..+..+.+. .+... +.-+.
T Consensus 387 ~~eLEeW~~-dPE~~---~~Eq~~~dwey~lRPCaE~L~~~lF~~y----sqllvP~~l~~i~~a-~~~~~pt~~~~l~a 457 (978)
T KOG1993|consen 387 EEELEEWTQ-DPEGW---VLEQSGGDWEYNLRPCAEKLYKDLFDAY----SQLLVPPVLDMIYSA-QELQSPTVTEDLTA 457 (978)
T ss_pred HHHHHHHhc-ChHHh---hhhcccccceeccchhHHHHHHHHHHHH----HHhhhHHHHHHHHHH-HhcCCCCccchHHH
Confidence 445667777 78775 2233333455677888888888876553 112233333322111 11110 00122
Q ss_pred hHH-HHHHHHHHHHHhc---ccCCCCc--hhhHHHHHHhhcCCChhhHHHHHHHHHHhhhh-hhhhhhhhHHHHHHHHHH
Q 001249 119 SIS-KKLCDTVSELASN---ILPENGW--PELLPFMFQCVSSDSVKLQESAFLIFAQLSQY-IGDTLTPHLKHLHAVFLN 191 (1114)
Q Consensus 119 ~vr-~~~~~~i~~ia~~---~~~~~~w--~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~~~l~~~l~~ 191 (1114)
-++ .++-.++|.-+.. ..+-+.| ..++|.+..-. ......|.....+++.-... ...+ ....+.-.+.+
T Consensus 458 ~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl~~~~-~~~RiiRRRVa~ilg~Wvsvq~~~e---~k~l~Y~a~ln 533 (978)
T KOG1993|consen 458 LLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPELANDH-GNSRIIRRRVAWILGQWVSVQQKLE---LKPLLYCAFLN 533 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHhhhcc-cchhHHHHHHHHHHhhhhheechHh---HHHHHHHHHHH
Confidence 222 2333344433332 2233466 34556655211 11223455555666655542 2222 34455667888
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHccchHHHHHHH
Q 001249 192 CLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-GNEATAQEALELLIELAGTEPRFLRRQL 270 (1114)
Q Consensus 192 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 270 (1114)
.+++..+..||.++++++...+... .+..+.|.+.+|.+...++..++. +.-+.+..++..++.+++..++.+.|+.
T Consensus 534 LL~d~~D~vV~Ltt~~tlkl~vDD~--nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~ 611 (978)
T KOG1993|consen 534 LLQDQNDLVVRLTTARTLKLVVDDW--NFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYA 611 (978)
T ss_pred hcCccccceeehHHHHHHHHhhhhc--cCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 8888767889999999999988765 335567888888888777776653 3557888999999999999999999988
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcccc
Q 001249 271 VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAG 350 (1114)
Q Consensus 271 ~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~ 350 (1114)
..++.++-.+-...+.++-.|.+.+..+..++..-+..+ ..+.+++-+++... .+++..+ .
T Consensus 612 ~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS---~~~~~fL~pVIel~----~D~~sP~-h----------- 672 (978)
T KOG1993|consen 612 STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQS---FEFYPFLYPVIELS----TDPSSPE-H----------- 672 (978)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCC---ccchHHHHHHHHHh----cCCCCCc-e-----------
Confidence 877665544433323344567777777777776421111 11223333333221 2221110 0
Q ss_pred CCCchhhHHHHHHHHHHHcCC-CcchH---HHHHHHHHhhCCCChhHHHHHHHHHH-HHHhhcHHHHHHhHHHHHHHHHh
Q 001249 351 ESSNYSVGQECLDRLAIALGG-NTIVP---VASEQLPAYLAAPEWQKHHAALIALA-QIAEGCAKVMVKNLEQVLSMVLN 425 (1114)
Q Consensus 351 ~~~~~~~a~~~l~~l~~~~~~-~~~~~---~l~~~l~~~l~~~~~~~r~aal~~l~-~l~~~~~~~~~~~l~~i~~~l~~ 425 (1114)
-....+.+......++. ..+-| .++|++...+.-..-..| .++..+. .+.-..+..+..|...++..+..
T Consensus 673 ----v~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~ 747 (978)
T KOG1993|consen 673 ----VYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFLNDYAFGIFKKLND 747 (978)
T ss_pred ----eehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 00111122111111111 11111 123333333321111222 2333332 22223344666777777777777
Q ss_pred cCCCCChhHHHHHHHHHHHhHhhh---chhHHhhhhhhhHHHHHhhccC-CCChhHHHHHHHHHHHhhhcCCccccc---
Q 001249 426 SFRDPHPRVRWAAINAIGQLSTDL---GPDLQNQFHPQVLPALAGAMDD-FQNPRVQAHAASAVLNFSENCTPEILT--- 498 (1114)
Q Consensus 426 ~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~~~~il~~l~~~l~~-~~~~~v~~~a~~al~~l~~~~~~~~l~--- 498 (1114)
.+.| ||..+..++-.+.+.+ .+-+...+...++|.++..+-. .+.|-+...-...++.+.-. .++.+.
T Consensus 748 ~l~d----vr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~-n~~~~msvl 822 (978)
T KOG1993|consen 748 LLDD----VRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLR-NPSLFMSVL 822 (978)
T ss_pred HHHH----hhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhc-ChHHHHHHH
Confidence 7655 4544444444433322 2233334677788888776532 15565544433333332211 111111
Q ss_pred ---CchHHHHHHH----HHHhhc-CChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHH
Q 001249 499 ---PYLDGIVSKL----LVLLQN-GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSME 570 (1114)
Q Consensus 499 ---~~l~~il~~L----~~~l~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~ 570 (1114)
+-.+.++..+ +.+..+ ++++-|+--.-+++++...-...+..-++.|+....+.+..-.+++ ++.+-.
T Consensus 823 qt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~~~~I~nl~~e~L~eV~ed~----~g~~~~ 898 (978)
T KOG1993|consen 823 QTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILAVLDSIMNLWFEVLSEVMEDA----NGDATD 898 (978)
T ss_pred HhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHHHHhHHHHHHHHHHHHHhhhc----cCchHH
Confidence 1122333222 223333 3466677777777887776555555566667776666655422111 111111
Q ss_pred HH-HHHHHHhchhhhhhhHHHHHHHHHHHh-cCCCCCCCchhhHHHHHHHHHHHHhccC-CccchhhhhHHHHHhcc
Q 001249 571 CI-SLVGMAVGKDKFRDDAKQVMEVLMSLQ-GSQMETDDPTTSYMLQAWARLCKCLGQD-FLPYMSVVMPPLLQSAQ 644 (1114)
Q Consensus 571 ~l-~~i~~~~~~~~f~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~i~~~ll~~~~ 644 (1114)
+. .......| .+.+.-.+=+..=..+. ++.+. .-++++++...+..+-..+|.+ +..|+..+-|.+++.++
T Consensus 899 ~~~~d~~~e~~--~~~d~tteq~~r~k~l~lkDPVh-~vsl~~fi~~~l~~~q~~lG~q~yqq~l~tVnp~lleqlq 972 (978)
T KOG1993|consen 899 YHLNDDLSEQG--VYEDETTEQDTRHKQLLLKDPVH-SVSLRSFIISVLMFLQDALGEQRYQQYLSTVNPELLEQLQ 972 (978)
T ss_pred HHhhhhhhccc--cCCchhhHHHHHHHHHhccCCcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHH
Confidence 10 00111111 11111111111101111 11111 1236778777777777778866 77889889898887764
No 78
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.58 E-value=0.00048 Score=74.28 Aligned_cols=289 Identities=15% Similarity=0.142 Sum_probs=178.1
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001249 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1114)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~ 260 (1114)
...++.|++..-+++. -..|...+.+++..+....- -.+++...++.|...+.++....|..|++.+..++.
T Consensus 261 ~~~q~rpfL~~wls~k-~emV~lE~Ar~v~~~~~~nv-------~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam 332 (898)
T COG5240 261 ALLQLRPFLNSWLSDK-FEMVFLEAARAVCALSEENV-------GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHHhcc-------CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 3456666777777775 67788888888887765421 134555677888888888888899999999999999
Q ss_pred cchHHHHH---HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCc
Q 001249 261 TEPRFLRR---QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (1114)
Q Consensus 261 ~~~~~~~~---~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 337 (1114)
.+|....- .+..++. +.+..+ +...+.++.+. . ....+..++..+...+.+..|+
T Consensus 333 ~~P~kv~vcN~evEsLIs---------d~Nr~I---styAITtLLKT---G------t~e~idrLv~~I~sfvhD~SD~- 390 (898)
T COG5240 333 KYPQKVSVCNKEVESLIS---------DENRTI---STYAITTLLKT---G------TEETIDRLVNLIPSFVHDMSDG- 390 (898)
T ss_pred hCCceeeecChhHHHHhh---------cccccc---hHHHHHHHHHc---C------chhhHHHHHHHHHHHHHhhccC-
Confidence 88765432 2222221 223333 44445555552 1 1234555666555555544332
Q ss_pred ccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHhhcHHHHHHhH
Q 001249 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1114)
Q Consensus 338 ~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1114)
-..++.+++..|+..++.+ ...++.++...+. ....+-+.+++.++..+.+..++.-..
T Consensus 391 ----------------FKiI~ida~rsLsl~Fp~k--~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-- 450 (898)
T COG5240 391 ----------------FKIIAIDALRSLSLLFPSK--KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-- 450 (898)
T ss_pred ----------------ceEEeHHHHHHHHhhCcHH--HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH--
Confidence 1235778888999888743 2234555554443 456777888888888888776643323
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHH-hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1114)
.+..++..+.|.. --+.+...|+-+.+..+..-. ..|...++..+ -- .+..||.+|..||..|.-+....
T Consensus 451 --aLe~LC~fIEDce--y~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~----iL-EN~ivRsaAv~aLskf~ln~~d~ 521 (898)
T COG5240 451 --ALEVLCTFIEDCE--YHQITVRILGILGREGPRAKTPGKYVRHIYNRL----IL-ENNIVRSAAVQALSKFALNISDV 521 (898)
T ss_pred --HHHHHHHHHhhcc--hhHHHHHHHHHhcccCCCCCCcchHHHHHHHHH----HH-hhhHHHHHHHHHHHHhccCcccc
Confidence 3344444444432 233455566666554432110 23444444433 22 46789999999999998766532
Q ss_pred cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001249 496 ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1114)
Q Consensus 496 ~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~ 531 (1114)
. ....+...|..++++.+.++|..|--++..+-
T Consensus 522 ~---~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 522 V---SPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred c---cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 2 23455667778999999999999877766553
No 79
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.58 E-value=3.3e-06 Score=98.90 Aligned_cols=208 Identities=14% Similarity=0.227 Sum_probs=168.2
Q ss_pred CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhc
Q 001249 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 450 (1114)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1114)
.++++.+-+.+...+.|++|+.|..|+..+..+.+... +....+...+...+-..+.|.|..|...++.+|..++..++
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 46677777788888889999999999999998887665 22334455555666667889999999999999999999999
Q ss_pred hhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001249 451 PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1114)
Q Consensus 451 ~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l 530 (1114)
..+ ..|...++|.++..+.+ ..+.++..+..++..++... .+..+.+.+...+.+.++.++......++..
T Consensus 328 ~~~-~~~~~~v~p~lld~lke-kk~~l~d~l~~~~d~~~ns~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 328 PLF-RKYAKNVFPSLLDRLKE-KKSELRDALLKALDAILNST-------PLSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred hhh-HHHHHhhcchHHHHhhh-ccHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 887 78999999999999999 88999999999988888733 3667778888888999999999999999988
Q ss_pred HHhhhh--hhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHH
Q 001249 531 ADSSQE--HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 592 (1114)
Q Consensus 531 ~~~~~~--~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~ 592 (1114)
....+. .+.+-...+.|.+.....+ ....+|..|.++++.+.+.+|.+.|..++..+-
T Consensus 399 ~~~~~~~~~~~~t~~~l~p~~~~~~~D----~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 399 LRKLGPKTVEKETVKTLVPHLIKHIND----TDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred HhhcCCcCcchhhHHHHhHHHhhhccC----CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 887773 2344567788888776543 345689999999999999999777766655544
No 80
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.57 E-value=2.1e-07 Score=76.68 Aligned_cols=67 Identities=33% Similarity=0.565 Sum_probs=59.9
Q ss_pred HHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCccc--------CCCHHHHHHHHHHHHHHH
Q 001249 42 AELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP--------RLSLHTQSSLKSMLLQSI 112 (1114)
Q Consensus 42 Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~--------~l~~~~~~~i~~~ll~~l 112 (1114)
||++|+++++++|+ |...|++++.+ +.++.+|++|+++||+.|.++ |. .++++.+..||+.+++.|
T Consensus 1 AE~~L~~~~~~~p~-~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~----W~~~~~~~~~~~~~~~k~~Ik~~ll~~l 75 (77)
T PF03810_consen 1 AEQQLKQFQKQNPG-FWQYLLQILSSNSQDPEVRQLAAILLKNLIKKN----WSPSKQKGWSQLPEEEKEQIKSQLLQLL 75 (77)
T ss_dssp HHHHHHHHHHSCTC-HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS----GGHHHHHHHHGSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc----CchhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 79999999993376 56999999965 669999999999999999998 88 999999999999999987
Q ss_pred h
Q 001249 113 Q 113 (1114)
Q Consensus 113 ~ 113 (1114)
.
T Consensus 76 ~ 76 (77)
T PF03810_consen 76 L 76 (77)
T ss_dssp H
T ss_pred c
Confidence 5
No 81
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=2.6e-06 Score=85.94 Aligned_cols=358 Identities=17% Similarity=0.168 Sum_probs=212.2
Q ss_pred hhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhh-hhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcch
Q 001249 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1114)
Q Consensus 143 ~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 221 (1114)
+....+.-++++.++..+..+-..++.++-..... +.-.+..+-+++.+.+.+ ...+|-.++.|+.+++.+-+.+..
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd--~vevqcnaVgCitnLaT~d~nk~k 162 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD--GVEVQCNAVGCITNLATFDSNKVK 162 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC--CcEEEeeehhhhhhhhccccchhh
Confidence 44555666788899988888889999887665433 222344444566777766 568899999999999986322111
Q ss_pred HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHH--HHHHHHHHHHhccCCcchhHHHHHHHHHH
Q 001249 222 RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL--VDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1114)
Q Consensus 222 ~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~ll~~~~~~~~~~~vr~~a~~~l~ 299 (1114)
..... -+..+..+.++.+..++..+...|..+...+.. +..+ ..-++++...+. ..+.+++..+...+.
T Consensus 163 iA~sG-----aL~pltrLakskdirvqrnatgaLlnmThs~En--Rr~LV~aG~lpvLVsll~--s~d~dvqyycttais 233 (550)
T KOG4224|consen 163 IARSG-----ALEPLTRLAKSKDIRVQRNATGALLNMTHSREN--RRVLVHAGGLPVLVSLLK--SGDLDVQYYCTTAIS 233 (550)
T ss_pred hhhcc-----chhhhHhhcccchhhHHHHHHHHHHHhhhhhhh--hhhhhccCCchhhhhhhc--cCChhHHHHHHHHhh
Confidence 11111 122233344566777888888887766533221 1111 123455555553 346778888887777
Q ss_pred HHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHH
Q 001249 300 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVAS 379 (1114)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~ 379 (1114)
.++-... .|+ .+++ .-|.+.
T Consensus 234 nIaVd~~-----~Rk-------------------------------------------------~Laq------aep~lv 253 (550)
T KOG4224|consen 234 NIAVDRR-----ARK-------------------------------------------------ILAQ------AEPKLV 253 (550)
T ss_pred hhhhhHH-----HHH-------------------------------------------------HHHh------cccchH
Confidence 6654210 000 0111 112234
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh
Q 001249 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1114)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1114)
+.+..++.+++.+++.-|-.+|+.++........-.-..-+|.+++.++++.-..--+...|+..++-+-.... .-.-.
T Consensus 254 ~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~-lI~da 332 (550)
T KOG4224|consen 254 PALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV-LIADA 332 (550)
T ss_pred HHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc-ceecc
Confidence 44445566677777777777777776543211111111235777888888877777777788877765433322 11123
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhh
Q 001249 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ 539 (1114)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~ 539 (1114)
.++..+...|....+.+++-+|.+.|.++........-.-.-..-++.+..++-+....+|+..-.|++.++..-. +.
T Consensus 333 gfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~--~k 410 (550)
T KOG4224|consen 333 GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN--DK 410 (550)
T ss_pred cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc--cH
Confidence 3555566666653466799999999999987543221011122347888888889999999999999988875432 22
Q ss_pred hhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHH
Q 001249 540 KYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1114)
Q Consensus 540 ~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1114)
.++ ..++|.|.... .++..++|+.+-++++.+...
T Consensus 411 ~~lld~gi~~iLIp~t----~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 411 EALLDSGIIPILIPWT----GSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHHhhcCCcceeeccc----CccchhhcccHHHHHHhhhhh
Confidence 232 24566666542 345567888887777766543
No 82
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.54 E-value=0.0072 Score=73.51 Aligned_cols=321 Identities=13% Similarity=0.167 Sum_probs=171.9
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001249 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1114)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~ 260 (1114)
.++..+..++..+..+ ...+|..|++|+..+++.-+ . .-.-|.+...+..-+.+....+|..|+++++.++-
T Consensus 813 sfD~yLk~Il~~l~e~-~ialRtkAlKclS~ive~Dp-----~--vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl 884 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGEN-AIALRTKALKCLSMIVEADP-----S--VLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL 884 (1692)
T ss_pred hhHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhcCh-----H--hhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh
Confidence 4566777778888876 89999999999999998531 1 12234555566666677788999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCc---
Q 001249 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP--- 337 (1114)
Q Consensus 261 ~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--- 337 (1114)
.+++....|...+.+-+ .|..-.||..++..+..+|+. .| -++.+...+.+++..+.|++
T Consensus 885 ~~~e~~~qyY~~i~erI------lDtgvsVRKRvIKIlrdic~e---~p--------df~~i~~~cakmlrRv~DEEg~I 947 (1692)
T KOG1020|consen 885 SIPELIFQYYDQIIERI------LDTGVSVRKRVIKILRDICEE---TP--------DFSKIVDMCAKMLRRVNDEEGNI 947 (1692)
T ss_pred ccHHHHHHHHHHHHhhc------CCCchhHHHHHHHHHHHHHHh---CC--------ChhhHHHHHHHHHHHhccchhHH
Confidence 99988888888877633 356788999999999999983 33 23445556666666555432
Q ss_pred ----------ccccCCCCCccccCCCchhhHHHHHHHHHH-HcCCCcchHHHHHHHHH-hhCCCChhHHHHHHHHHHHHH
Q 001249 338 ----------LWHSAETEDEDAGESSNYSVGQECLDRLAI-ALGGNTIVPVASEQLPA-YLAAPEWQKHHAALIALAQIA 405 (1114)
Q Consensus 338 ----------~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~l~~~l~~-~l~~~~~~~r~aal~~l~~l~ 405 (1114)
-|-.......| -.....++...+-..... ..+ ....+.++..+.. ...- +...+...++
T Consensus 948 ~kLv~etf~klWF~p~~~~~d-~~~~~~kI~~~~~vv~~~~d~~-~~~~eqLl~~ilk~~~~~-------~~~~~~~~v~ 1018 (1692)
T KOG1020|consen 948 KKLVRETFLKLWFTPVPEVND-QPAKARKISLEVDVVMSQVDLM-NDWLEQLLDHILKFYLLK-------TMKESVKPVA 1018 (1692)
T ss_pred HHHHHHHHHHHhccCCCcccc-cHHHHHhhHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHhh-------hhhhhhhHHH
Confidence 14322111000 000001111000000000 111 1222322222211 1100 0011111111
Q ss_pred hhcHHHHHHh-----HHHHHHHHHhcCCCCChhHHH-HHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHH
Q 001249 406 EGCAKVMVKN-----LEQVLSMVLNSFRDPHPRVRW-AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQA 479 (1114)
Q Consensus 406 ~~~~~~~~~~-----l~~i~~~l~~~l~d~~~~vr~-~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~ 479 (1114)
..+....... ...+...--....+.+..+|. +.+.+|..|+...+.-+..+|...+.|.+-..-.......+-.
T Consensus 1019 ~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~ 1098 (1692)
T KOG1020|consen 1019 LAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLY 1098 (1692)
T ss_pred HhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHH
Confidence 1111100000 111111111123344555665 4566777777765544433777778887765522211223333
Q ss_pred HHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001249 480 HAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1114)
Q Consensus 480 ~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~ 536 (1114)
..+..+...+.-.. ..-..++..+=+.|++.+-..+...-..+..|+++++.....
T Consensus 1099 ~vi~Ile~VlPlv~-~~sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~ 1154 (1692)
T KOG1020|consen 1099 YVIQILECVLPLVA-NPSESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTD 1154 (1692)
T ss_pred HHHHHHHHHhhhhc-cchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhcc
Confidence 34444444433322 112345677777777777666666667788888888876443
No 83
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=3.7e-05 Score=81.70 Aligned_cols=165 Identities=17% Similarity=0.180 Sum_probs=133.3
Q ss_pred hHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHH
Q 001249 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1114)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1114)
.+.++..+.....+..|+.|......++.+....--.-...+..++..+.....|++..+|..|+.+|+..++..+...
T Consensus 215 ~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv- 293 (533)
T KOG2032|consen 215 MGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV- 293 (533)
T ss_pred HHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH-
Confidence 3444444444455677999988877777766432111114567788888889999999999999999999999876666
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001249 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1114)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~ 534 (1114)
..|...++..++..|-|..+..|+..+..+|..+.+......+.+|+-++--.+..++.+.+.++|..++..+|.++...
T Consensus 294 ~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 294 RTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred HHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 68999999999999988667899999999999999888777789999999999999999999999999999999999888
Q ss_pred hhhhhh
Q 001249 535 QEHFQK 540 (1114)
Q Consensus 535 ~~~~~~ 540 (1114)
|..-..
T Consensus 374 g~~~e~ 379 (533)
T KOG2032|consen 374 GGGWEE 379 (533)
T ss_pred CCCchh
Confidence 765443
No 84
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.51 E-value=1.1e-05 Score=94.06 Aligned_cols=298 Identities=18% Similarity=0.226 Sum_probs=189.6
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc---h
Q 001249 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE---P 263 (1114)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~---~ 263 (1114)
+++..++..-...+.|..|+..+..+..+..+ ...+...+| .+..++.++..++|..|++.+.++...- +
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlP----Y~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~ 497 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLP----YFVHLLMDSEADVRATALETLTELLALVRDIP 497 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHH----HHHHHhcCchHHHHHHHHHHHHHHHhhccCCC
Confidence 34444443322457789999999999988753 223344444 4455567889999999999988776432 1
Q ss_pred ----HHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccc
Q 001249 264 ----RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 339 (1114)
Q Consensus 264 ----~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 339 (1114)
..|..| +++.+-.++.+. ....+|..-..++..+++. + ..|++.....=...| .+++
T Consensus 498 ~~daniF~eY---lfP~L~~l~~d~-~~~~vRiayAsnla~LA~t---A-------~rFle~~q~~~~~g~---~n~~-- 558 (1431)
T KOG1240|consen 498 PSDANIFPEY---LFPHLNHLLNDS-SAQIVRIAYASNLAQLAKT---A-------YRFLELTQELRQAGM---LNDP-- 558 (1431)
T ss_pred cccchhhHhh---hhhhhHhhhccC-ccceehhhHHhhHHHHHHH---H-------HHHHHHHHHHHhccc---ccCc--
Confidence 122222 233333333221 3456787777778877772 1 112222111100001 1110
Q ss_pred ccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHH
Q 001249 340 HSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (1114)
Q Consensus 340 ~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i 419 (1114)
++|.. ....+.... ..+...+-+.+..++.++++.+|++-+..++-++.-.++ .+.=+-|
T Consensus 559 -----nset~-~~~~~~~~~------------~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk--~ksND~i 618 (1431)
T KOG1240|consen 559 -----NSETA-PEQNYNTEL------------QALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK--EKSNDVI 618 (1431)
T ss_pred -----ccccc-cccccchHH------------HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh--cccccch
Confidence 00000 000111111 122233444556677888899999988887776653321 1122458
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccC
Q 001249 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (1114)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~ 499 (1114)
++.+...|+|.++++|.+-+..+.-++-..+.. ..-+-++|.+.+.|.| +.+.|-..|..++..+++..-- =.+
T Consensus 619 LshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~seyllPLl~Q~ltD-~EE~Viv~aL~~ls~Lik~~ll--~K~ 692 (1431)
T KOG1240|consen 619 LSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SVSEYLLPLLQQGLTD-GEEAVIVSALGSLSILIKLGLL--RKP 692 (1431)
T ss_pred HHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eHHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHhccc--chH
Confidence 899999999999999999999888777666653 2345689999999999 8899999999999999986432 247
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001249 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1114)
Q Consensus 500 ~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~ 536 (1114)
++-++++....++-+++.-+|..++..|..++...+.
T Consensus 693 ~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 693 AVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 8889999999999999999999999999999887664
No 85
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.50 E-value=4.2e-07 Score=76.73 Aligned_cols=87 Identities=26% Similarity=0.455 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhh
Q 001249 434 VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ 513 (1114)
Q Consensus 434 vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~ 513 (1114)
.|..++.+|+.++..++..+ .+|++.++|.++.++.| ++++||..||.+|.+++...+.+ +.+|+..+++.|.+++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~-~~~l~~Il~pVL~~~~D-~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDI-SKYLDEILPPVLKCFDD-QDSRVRYYACEALYNISKVARGE-ILPYFNEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhH-HHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHc
Confidence 48899999999999999887 79999999999999999 99999999999999999998866 45799999999999999
Q ss_pred cCChhHHHHH
Q 001249 514 NGKQMVQEGA 523 (1114)
Q Consensus 514 ~~~~~v~~~a 523 (1114)
++++.||..|
T Consensus 79 D~d~~Vr~~a 88 (97)
T PF12755_consen 79 DPDENVRSAA 88 (97)
T ss_pred CCchhHHHHH
Confidence 9999998766
No 86
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.40 E-value=0.00012 Score=81.51 Aligned_cols=358 Identities=16% Similarity=0.188 Sum_probs=200.2
Q ss_pred hhhccccHHHHHHHhhhccccc---CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccC
Q 001249 703 KEGFFPWIDQVAPTLVPLLKFY---FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKE 779 (1114)
Q Consensus 703 ~~~~~p~~~~~~~~l~~~l~~~---~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 779 (1114)
+..+.|++++++..++..+... -|+-+ ++|+-+++..... ...+....+++.+...+....++-
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeyl----Mk~iMRvl~~~~e---------~~~p~~~~il~~L~~il~~v~kNP 83 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYL----MKCIMRVLSVLQE---------DILPIAVEILQHLTAILKEVSKNP 83 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHH----HHHHHHHHHHSTT---------TTGGGHHHHHHHHHHHHHHHHTS-
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHH----HHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4457899999999998888653 24444 4444443332210 012234455555555554455555
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHH
Q 001249 780 PDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQ 859 (1114)
Q Consensus 780 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~ 859 (1114)
.++.--.-.+++++.+++..+. -+++.+..+-+.+++.+...++. |. .+....
T Consensus 84 snP~FnHylFEsi~~lir~~~~-~~~~~v~~~E~~L~P~f~~ILq~-----------dV---------------~EF~PY 136 (435)
T PF03378_consen 84 SNPRFNHYLFESIGALIRFVCE-ADPEAVSQFEEALFPPFQEILQQ-----------DV---------------QEFIPY 136 (435)
T ss_dssp --HHHHHHHHHHHHHHHHHS-G-GGHH---HHHHHHHHHHHHHHHT-----------T----------------TTTHHH
T ss_pred CCcchhhhHHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHHHHH-----------HH---------------HHHHHH
Confidence 5666656688899988887553 33444455556666666654431 10 123344
Q ss_pred HHHHHHHHHHHhh-hchhhhHHHHHHhHhh--hhcCCCCHHHHHHHHHHHHHHHhHhhhhhh--hhhHhHHHHHHHhccC
Q 001249 860 VGEILGTLIKTFK-AAFLPFFDELSSYLTP--MWGKDKTAEERRIAICIFDDVAEQCREAAL--KYYETYLPFLLEACND 934 (1114)
Q Consensus 860 ~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~--~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~--~~~~~i~~~ll~~l~~ 934 (1114)
+.++++.+....+ +...+....++|.++. .+....+ --..+..+..+++..+..+. +++..++..+-+.+.+
T Consensus 137 vfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gn---iPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~s 213 (435)
T PF03378_consen 137 VFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGN---IPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIAS 213 (435)
T ss_dssp HHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTT---HHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCC---cCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCC
Confidence 6777888887777 4444455555555542 2211111 12245677777777766553 4788889888888877
Q ss_pred CChhHHhhhhHHHHHHHhhcCC-CchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcC-C-------CC
Q 001249 935 ENQDVRQAAVYGLGVCAEFGGS-VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHR-D-------SI 1005 (1114)
Q Consensus 935 ~~~~vr~~a~~~lg~l~~~~~~-~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~-~-------~~ 1005 (1114)
...+ ..+++-|..+..+.+. .+.||+++++..+...++..+. ...+...+.-++.++...+ + .+
T Consensus 214 k~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT-----~kf~~~fv~F~~~~~~~~g~~~li~~id~I 286 (435)
T PF03378_consen 214 KAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKT-----EKFVKRFVVFLSLFAIKYGPDFLIQTIDSI 286 (435)
T ss_dssp TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred CCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCc-----HHHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 6544 4588999999999985 5889999999999999985431 1222222233333332221 1 11
Q ss_pred -C--HhhHHH-HHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcC---------------
Q 001249 1006 -D--AAQVVP-AWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCG--------------- 1066 (1114)
Q Consensus 1006 -~--~~~~~~-~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~~~~l~~--------------- 1066 (1114)
+ ..+++. .|+..++.-....|++.+.-++++|+... +...+...+..+.+++.+...+..
T Consensus 287 Q~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es-~~~~~~~~~~w~~ll~~Ll~ll~~p~~~~~~~~e~~~~~ 365 (435)
T PF03378_consen 287 QPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES-PAFLSEYSQLWPPLLEALLKLLERPPEASAADEEDFIDE 365 (435)
T ss_dssp STTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS-TTHHHH-CHHHHHHHHHHHHHHHTTSTT-S----S----
T ss_pred cCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc-HhhhhHHHHHHHHHHHHHHHHHcCCcccccccccccccc
Confidence 1 122333 34555554344567888888888888543 333222112233444444333320
Q ss_pred -----------------------CCC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CCHHHHHHHHhh
Q 001249 1067 -----------------------KDL-ATEQTLSRIVNLLKQLQQTLPPATLASTWSS-LQPQQQLALQSI 1112 (1114)
Q Consensus 1067 -----------------------~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-l~~~~~~~l~~~ 1112 (1114)
++. +-.+.+.-+.+.|+.+.+.+|+. +.+++++ |+++.|+.|++|
T Consensus 366 ~d~~~~gy~~~fs~L~~a~~~~~Dp~~~i~d~~~~~~~~L~~~~~~~~G~-~~~~i~~~l~~~~~~~L~~y 435 (435)
T PF03378_consen 366 EDVEDIGYQVSFSKLAFAGKKPRDPLPEIPDPKQYLAQSLSKLSQAHPGK-IPPLIQQQLPPEAQQALQQY 435 (435)
T ss_dssp -------TT-GGG--GGG------S-TTTTCHHHHHHHHHHHHHHHTTSS-HHHHHGGGS-HHHHHHHHH-
T ss_pred ccchhcccchhhHHHHhCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCc-hHHHHHhhCCHHHHHHhccC
Confidence 011 11357888899999999999998 8888887 999999999985
No 87
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.39 E-value=1.9e-06 Score=78.90 Aligned_cols=112 Identities=19% Similarity=0.227 Sum_probs=89.7
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhh
Q 001249 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1114)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1114)
+++.+.+.+.+.+|..|..++.+++.++.+.++.....+. .+++.+.+.+.++++.+|..++++|++++...+.....-
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 3445555667788999999999999999886654444455 788999999999999999999999999998754333112
Q ss_pred hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001249 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1114)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1114)
.-..+++.+.+.+++ .+..++..++++|.++++
T Consensus 88 ~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDS-SNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhhC
Confidence 334689999999998 789999999999998863
No 88
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.003 Score=70.56 Aligned_cols=259 Identities=16% Similarity=0.197 Sum_probs=144.2
Q ss_pred CchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCc
Q 001249 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1114)
Q Consensus 140 ~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 219 (1114)
--.++-+.++.++.++.+-+|..|+.++..++...++.+++.+ |.+..-|.|+ ++.|..+|+..++.++..-
T Consensus 141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~F----prL~EkLeDp-Dp~V~SAAV~VICELArKn--- 212 (877)
T KOG1059|consen 141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCF----PRLVEKLEDP-DPSVVSAAVSVICELARKN--- 212 (877)
T ss_pred hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhH----HHHHHhccCC-CchHHHHHHHHHHHHHhhC---
Confidence 3457788888889999899999999999999888888766544 4566677887 8999999999999888764
Q ss_pred chHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHH
Q 001249 220 ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1114)
Q Consensus 220 ~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~ 299 (1114)
+..+-++-|.+.+.+.. +.+.-.....+.+|+.+.-..|..-.+.++.+.+.+-.. .....-.||+.
T Consensus 213 --PknyL~LAP~ffklltt---SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT--------~AmSLlYECvN 279 (877)
T KOG1059|consen 213 --PQNYLQLAPLFYKLLVT---SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMEST--------VAMSLLYECVN 279 (877)
T ss_pred --CcccccccHHHHHHHhc---cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhh--------HHHHHHHHHHH
Confidence 34466677777776654 334445566777787777665554444444443322211 11112334444
Q ss_pred HHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHH
Q 001249 300 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVAS 379 (1114)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~ 379 (1114)
+++.. ++....+++ ...+..|++.|...-+| ++......+.-++..++..-+ ..+..--
T Consensus 280 TVVa~-----s~s~g~~d~-~asiqLCvqKLr~fied-------------sDqNLKYlgLlam~KI~ktHp--~~Vqa~k 338 (877)
T KOG1059|consen 280 TVVAV-----SMSSGMSDH-SASIQLCVQKLRIFIED-------------SDQNLKYLGLLAMSKILKTHP--KAVQAHK 338 (877)
T ss_pred Hheee-----hhccCCCCc-HHHHHHHHHHHhhhhhc-------------CCccHHHHHHHHHHHHhhhCH--HHHHHhH
Confidence 44431 111111111 22334444444322111 011223334444444443322 1222233
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHhH
Q 001249 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHP-RVRWAAINAIGQLS 446 (1114)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~-~vr~~a~~~l~~l~ 446 (1114)
..+...+.|.+...|.-|+..+..++.. +.+..|+..++..+...++ ..|..-+.-+-.+|
T Consensus 339 dlIlrcL~DkD~SIRlrALdLl~gmVsk------kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 339 DLILRCLDDKDESIRLRALDLLYGMVSK------KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 4455566677777777777777666542 4555566555555544443 45554444443443
No 89
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.36 E-value=8.6e-07 Score=67.06 Aligned_cols=55 Identities=33% Similarity=0.464 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHh
Q 001249 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (1114)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 445 (1114)
|.+|.+|+.+||.+++.+++.+.++++.+++.+...|+|+++.||.+|+++||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999875
No 90
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.31 E-value=0.002 Score=71.86 Aligned_cols=232 Identities=14% Similarity=0.184 Sum_probs=141.8
Q ss_pred CcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhh-ccCccchhhhHHHHHH
Q 001249 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN-ATDKSNRMLRAKSMEC 571 (1114)
Q Consensus 493 ~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~-~~~~~~~~lr~~a~~~ 571 (1114)
.++.+.|+...++..|+..+..+...--+....|+-.+....++...|+...+++.|..++.. ..++.....-...+|+
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEs 95 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFES 95 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHH
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Confidence 446688999999999999998765444466788888888888888889998888888887764 2344455566678999
Q ss_pred HHHHHHHhch---hhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhc-cCCccchhhhhHHHHHhccCCC
Q 001249 572 ISLVGMAVGK---DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKP 647 (1114)
Q Consensus 572 l~~i~~~~~~---~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~ 647 (1114)
++.+.+.+.+ +....+-..+++.+..+....+ ....+|+++.++.+.+... ..+.+..-.++|.++.-.
T Consensus 96 i~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV---~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~---- 168 (435)
T PF03378_consen 96 IGALIRFVCEADPEAVSQFEEALFPPFQEILQQDV---QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA---- 168 (435)
T ss_dssp HHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT----TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG----
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc----
Confidence 9999886542 2222344555666555444322 2457788888777777655 455555556666555222
Q ss_pred CccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHhhhcccccC
Q 001249 648 DVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF--PWIDQVAPTLVPLLKFYF 725 (1114)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~--p~~~~~~~~l~~~l~~~~ 725 (1114)
-|+. .+.. =+..+.|..+....+..+. ++++.++..+-+++....
T Consensus 169 -------------------lWe~-----------~gni---PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~ 215 (435)
T PF03378_consen 169 -------------------LWER-----------RGNI---PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA 215 (435)
T ss_dssp -------------------GGGS-----------TTTH---HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT
T ss_pred -------------------hhcc-----------CCCc---CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC
Confidence 2321 0111 1234577788777776664 678888888888887543
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccC
Q 001249 726 HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKE 779 (1114)
Q Consensus 726 ~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 779 (1114)
++ ..+...|..++..+. .+.+.+++..++..++.++++.
T Consensus 216 ~D---~~gF~LL~~iv~~~p------------~~~l~~yl~~I~~lll~RLq~s 254 (435)
T PF03378_consen 216 ND---HYGFDLLESIVENLP------------PEALEPYLKQIFTLLLTRLQSS 254 (435)
T ss_dssp CH---HHHHHHHHHHHHHS-------------HHHHGGGHHHHHHHHHHHHHHC
T ss_pred cc---hHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHHHHHhhC
Confidence 33 456677777776542 2234555666666666676654
No 91
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0051 Score=68.55 Aligned_cols=353 Identities=15% Similarity=0.193 Sum_probs=201.8
Q ss_pred HhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhH
Q 001249 150 QCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL 229 (1114)
Q Consensus 150 ~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~ 229 (1114)
++++++.-..+..+...+..+.+.-.+ .+..++..+.+-|.+. ++.-...|+.+++++-+.- ..+.|..=+
T Consensus 81 ~LLss~kysEKqIGYl~is~L~n~n~d----l~klvin~iknDL~sr-n~~fv~LAL~~I~niG~re----~~ea~~~DI 151 (938)
T KOG1077|consen 81 NLLSSNKYSEKQIGYLFISLLLNENSD----LMKLVINSIKNDLSSR-NPTFVCLALHCIANIGSRE----MAEAFADDI 151 (938)
T ss_pred HHhhcCCccHHHHhHHHHHHHHhcchH----HHHHHHHHHHhhhhcC-CcHHHHHHHHHHHhhccHh----HHHHhhhhh
Confidence 345555555566677777666655433 3444445555555554 6666777888888776532 334444434
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccc
Q 001249 230 PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAP 309 (1114)
Q Consensus 230 p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 309 (1114)
|.+ |.. .+..+-+++.+.-||..+.+..|+.+.+ ......++.++.+. +-.+-..+..++..+++ +.|
T Consensus 152 ~Kl---LvS--~~~~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~--~~gv~ta~~sLi~~lvk---~~p 219 (938)
T KOG1077|consen 152 PKL---LVS--GSSMDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQ--HMGVVTAATSLIEALVK---KNP 219 (938)
T ss_pred HHH---HhC--CcchHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCcc--ccceeeehHHHHHHHHH---cCC
Confidence 433 221 1234567788888888888888776654 23444555555433 34556677778888887 344
Q ss_pred hhhhcchhhHHHHHHHHHHhhcCC----CCC-cccccCCCCCccccCCCchhhHHHHHHHHHHHcCCC---cchHHHHHH
Q 001249 310 GMMRKLPQFINRLFAILMSMLLDI----EDD-PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPVASEQ 381 (1114)
Q Consensus 310 ~~~~~~~~~~~~l~~~l~~~l~~~----~~~-~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~l~~~ 381 (1114)
. .....++..+..+... .-+ .++.- -....+|- ..+++..| ..+++. .....+.+.
T Consensus 220 ~-------~yk~~~~~avs~L~riv~~~~t~~qdYTy-------y~vP~PWL-~vKl~rlL-q~~p~~~D~~~r~~l~ev 283 (938)
T KOG1077|consen 220 E-------SYKTCLPLAVSRLSRIVVVVGTSLQDYTY-------YFVPAPWL-QVKLLRLL-QIYPTPEDPSTRARLNEV 283 (938)
T ss_pred H-------HHhhhHHHHHHHHHHHHhhcccchhhcee-------ecCCChHH-HHHHHHHH-HhCCCCCCchHHHHHHHH
Confidence 2 2223333333332211 100 00000 00123342 12222222 222321 122223333
Q ss_pred HHHhhC-------CCChhH---HHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhch
Q 001249 382 LPAYLA-------APEWQK---HHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1114)
Q Consensus 382 l~~~l~-------~~~~~~---r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1114)
+...++ +.+... +.|.++-.-.++-.... -...+..-+..+-..+.+.++.+|+-|+..+..++.. .+
T Consensus 284 l~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~-e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~ 361 (938)
T KOG1077|consen 284 LERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDS-EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-EF 361 (938)
T ss_pred HHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-cc
Confidence 333332 333333 33444333333322110 1123455666777788999999999999999988865 22
Q ss_pred hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001249 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1114)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~ 531 (1114)
. .+....-...++..|+..++..+|..|...|..+|+... ...|+..+++.+.+.+..+|+....-++.++
T Consensus 362 s--~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N-------ak~IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 362 S--IDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN-------AKQIVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred h--HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh-------HHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 2 133333366677888843889999999999999987644 4577888999999999999999998889998
Q ss_pred HhhhhhhhhhHhhhhHHHH
Q 001249 532 DSSQEHFQKYYDAVMPFLK 550 (1114)
Q Consensus 532 ~~~~~~~~~~~~~i~~~L~ 550 (1114)
+....++.=|.+.+++.+.
T Consensus 433 EKyAtDy~WyVdviLqLir 451 (938)
T KOG1077|consen 433 EKYATDYSWYVDVILQLIR 451 (938)
T ss_pred HHhcCCcchhHHHHHHHHH
Confidence 8877776667766665543
No 92
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.006 Score=67.59 Aligned_cols=294 Identities=17% Similarity=0.204 Sum_probs=176.6
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch
Q 001249 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1114)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 263 (1114)
.+...+.....+. +..||..|++++..+-+.+. +-..+.+...+.+.+.++++|..|++++.-....+|
T Consensus 198 ~~~~~l~~~~~~~-D~~Vrt~A~eglL~L~eg~k----------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p 266 (823)
T KOG2259|consen 198 HAARGLIYLEHDQ-DFRVRTHAVEGLLALSEGFK----------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCP 266 (823)
T ss_pred HHHHHHHHHhcCC-CcchHHHHHHHHHhhccccc----------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCC
Confidence 3444455566665 89999999999987776431 111345566667778899999999998888777663
Q ss_pred HHH------HHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHH-HHHhhcC----
Q 001249 264 RFL------RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLLD---- 332 (1114)
Q Consensus 264 ~~~------~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~---- 332 (1114)
... .++.+..+..+...+. |.+-.+|..|.+.++.+-... ..++.+.+.. ++..+..
T Consensus 267 ~~~e~e~~e~kl~D~aF~~vC~~v~--D~sl~VRV~AaK~lG~~~~vS----------ee~i~QTLdKKlms~lRRkr~a 334 (823)
T KOG2259|consen 267 APLERESEEEKLKDAAFSSVCRAVR--DRSLSVRVEAAKALGEFEQVS----------EEIIQQTLDKKLMSRLRRKRTA 334 (823)
T ss_pred CcccchhhhhhhHHHHHHHHHHHHh--cCceeeeehHHHHhchHHHhH----------HHHHHHHHHHHHhhhhhhhhhc
Confidence 111 1233444444444443 456678888888887765421 1233333221 1111110
Q ss_pred ------CCCCcccccCCC-------CCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHH
Q 001249 333 ------IEDDPLWHSAET-------EDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALI 399 (1114)
Q Consensus 333 ------~~~~~~~~~~~~-------~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~ 399 (1114)
.....+|....+ +++|+++.+.-. ..+ .| .+ .-.+.|.-..+|.||+.
T Consensus 335 hkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~--sGA-------CG--A~--------VhGlEDEf~EVR~AAV~ 395 (823)
T KOG2259|consen 335 HKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIP--SGA-------CG--AL--------VHGLEDEFYEVRRAAVA 395 (823)
T ss_pred ccchHHHHhcCCcccCccccccCchhhcccccccccc--ccc-------cc--ee--------eeechHHHHHHHHHHHH
Confidence 001223443221 111111111110 000 11 11 11233444679999999
Q ss_pred HHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHH
Q 001249 400 ALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQA 479 (1114)
Q Consensus 400 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~ 479 (1114)
.++.++...+. +-..-+.++...++|+-..||-.|..+|..++.++. .-+..++.++..|.| .++++|+
T Consensus 396 Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~------i~eeql~~il~~L~D-~s~dvRe 464 (823)
T KOG2259|consen 396 SLCSLATSSPG----FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA------IREEQLRQILESLED-RSVDVRE 464 (823)
T ss_pred HHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe------ecHHHHHHHHHHHHh-cCHHHHH
Confidence 99999987664 334566777888999999999999999999987742 345677888888999 8899988
Q ss_pred HHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001249 480 HAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1114)
Q Consensus 480 ~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~ 536 (1114)
+....|.. +.-.. ...+...+..|++.+... |.-|...+.|++.+.+.-+.
T Consensus 465 ~l~elL~~----~~~~d-~~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 465 ALRELLKN----ARVSD-LECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred HHHHHHHh----cCCCc-HHHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccChh
Confidence 76655543 22221 234666677777777653 33456788888888766543
No 93
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=0.0025 Score=72.43 Aligned_cols=372 Identities=16% Similarity=0.249 Sum_probs=209.6
Q ss_pred hHHHHHHhhcCC-ChhhHHHHHHHHHHhhhhhh---h-hhhh-hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcC
Q 001249 144 LLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIG---D-TLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1114)
Q Consensus 144 ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~---~-~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (1114)
=+..|++.++.. ++. ..+..+..+|+.+. + .+.. -++.++|.+...|++..+.++...|++|+..+++.++
T Consensus 168 k~kkLL~gL~~~~Des---~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDES---QQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHHhccccCChH---HHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 355566666654 543 35666667776532 1 1221 3788999999999998889999999999999999886
Q ss_pred CcchHhHHH--hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHH--HHHHHHHHHHHHhccCCcchhHHHH
Q 001249 218 SSADRDRFQ--DLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAESLEEGTRHL 293 (1114)
Q Consensus 218 ~~~~~~~~~--~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~l~~~ll~~~~~~~~~~~vr~~ 293 (1114)
.. ..... ..+|.+++.|.. -..-+++.++++++-.+.+.++..+-. .+..++.++ .+. .-.+...
T Consensus 245 ~S--~a~vV~~~aIPvl~~kL~~---IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl-DFF-----Si~aQR~ 313 (1051)
T KOG0168|consen 245 RS--SAIVVDEHAIPVLLEKLLT---IEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL-DFF-----SIHAQRV 313 (1051)
T ss_pred ch--hheeecccchHHHHHhhhh---hhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH-HHH-----HHHHHHH
Confidence 42 12222 367777776654 235688999999999998888765532 122222222 111 2345667
Q ss_pred HHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC-C
Q 001249 294 AIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG-N 372 (1114)
Q Consensus 294 a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~-~ 372 (1114)
|+.....+|+. .+ ..-..++-..+|.|.+.+.+.++.. -....-|+.+++..+.. .
T Consensus 314 AlaiaaN~Cks---i~---sd~f~~v~ealPlL~~lLs~~D~k~-----------------ies~~ic~~ri~d~f~h~~ 370 (1051)
T KOG0168|consen 314 ALAIAANCCKS---IR---SDEFHFVMEALPLLTPLLSYQDKKP-----------------IESVCICLTRIADGFQHGP 370 (1051)
T ss_pred HHHHHHHHHhc---CC---CccchHHHHHHHHHHHHHhhccchh-----------------HHHHHHHHHHHHHhcccCh
Confidence 88777888873 22 2345688889999999888754321 11233344444443321 0
Q ss_pred cch-----HHHHHHHHHhhCCC----ChhHHHHHHHHHHHHHhhcHHHHHHh----HHHHHHHHHhcCC-CCC-----hh
Q 001249 373 TIV-----PVASEQLPAYLAAP----EWQKHHAALIALAQIAEGCAKVMVKN----LEQVLSMVLNSFR-DPH-----PR 433 (1114)
Q Consensus 373 ~~~-----~~l~~~l~~~l~~~----~~~~r~aal~~l~~l~~~~~~~~~~~----l~~i~~~l~~~l~-d~~-----~~ 433 (1114)
..+ +-++..+.+++.-. +-....+.+..+..++.+|+..+... +..++..++.+-. .++ +.
T Consensus 371 ~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l 450 (1051)
T KOG0168|consen 371 DKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELL 450 (1051)
T ss_pred HHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccccccccc
Confidence 111 11333333333211 23344555666666766666432221 2222222222110 000 00
Q ss_pred HH--HHHH---------------------------------------------------HHHHHhHh-------------
Q 001249 434 VR--WAAI---------------------------------------------------NAIGQLST------------- 447 (1114)
Q Consensus 434 vr--~~a~---------------------------------------------------~~l~~l~~------------- 447 (1114)
.| ..-+ .+..++.+
T Consensus 451 ~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~ 530 (1051)
T KOG0168|consen 451 SRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQ 530 (1051)
T ss_pred ccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhh
Confidence 00 0000 00111111
Q ss_pred -h-----------hchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchH--HHHHHHHHHhh
Q 001249 448 -D-----------LGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD--GIVSKLLVLLQ 513 (1114)
Q Consensus 448 -~-----------~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~--~il~~L~~~l~ 513 (1114)
. -+|+....+...++|.+.+...+..++.||..+..||..++-....+.+...+. .+-..+-..+.
T Consensus 531 dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~ls 610 (1051)
T KOG0168|consen 531 DKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLS 610 (1051)
T ss_pred hhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhh
Confidence 0 023333567788999999988876789999999999998876655443222211 12233344555
Q ss_pred cCChhHHHHHHHHHHHHHHhhhhhhhhhHh--hhhHHHHHH
Q 001249 514 NGKQMVQEGALTALASVADSSQEHFQKYYD--AVMPFLKAI 552 (1114)
Q Consensus 514 ~~~~~v~~~al~~l~~l~~~~~~~~~~~~~--~i~~~L~~~ 552 (1114)
..+..+...|+.....+.+..++-|.+++. .++-.+.++
T Consensus 611 skD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L 651 (1051)
T KOG0168|consen 611 SKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQL 651 (1051)
T ss_pred cCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHH
Confidence 666777777888888888887777777663 344444443
No 94
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.22 E-value=0.0018 Score=68.62 Aligned_cols=432 Identities=15% Similarity=0.142 Sum_probs=228.0
Q ss_pred hhhHHHHHHHHHHHHHhcccCC----CCchhhHHH--------HHH-hhcCCChhhHHHHHHHHHHhhhhhhh-------
Q 001249 117 AKSISKKLCDTVSELASNILPE----NGWPELLPF--------MFQ-CVSSDSVKLQESAFLIFAQLSQYIGD------- 176 (1114)
Q Consensus 117 ~~~vr~~~~~~i~~ia~~~~~~----~~w~~ll~~--------l~~-~~~~~~~~~r~~al~~l~~l~~~~~~------- 176 (1114)
...||..+-.++....+. +++ +.|.-++|. ++- .++++++..|..|+.++..+.+....
T Consensus 9 ~akvr~~al~~~~~~~~~-~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~ 87 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKS-IEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAED 87 (728)
T ss_pred HHHHHhhHHHHHHHHHhh-hhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 344555554554444332 121 467655532 222 35678889999999999988865321
Q ss_pred ----hhhh-------hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCH
Q 001249 177 ----TLTP-------HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNE 245 (1114)
Q Consensus 177 ----~~~~-------~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~ 245 (1114)
.|.| .+.++...++-.|..+.++.+-...++|+..++...+- ...-..++-.++..+...+.+.|+
T Consensus 88 ~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~---~~l~~~~~~~~~~~ik~~i~~~d~ 164 (728)
T KOG4535|consen 88 TSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPY---DRLKLSLLTKVWNQIKPYIRHKDV 164 (728)
T ss_pred cCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 1222 33455555555565444678888899999999986431 112235666777888888888999
Q ss_pred HHHHHHHHHHHHHHccch---HH---H----------HHHHH--HH---------------------------HHHHHH-
Q 001249 246 ATAQEALELLIELAGTEP---RF---L----------RRQLV--DV---------------------------VGSMLQ- 279 (1114)
Q Consensus 246 ~~~~~~~~~l~~l~~~~~---~~---~----------~~~~~--~l---------------------------~~~ll~- 279 (1114)
.++..++..+..++.++. +. + .+|.. +. +..+..
T Consensus 165 ~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i 244 (728)
T KOG4535|consen 165 NVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISI 244 (728)
T ss_pred ChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeee
Confidence 999999999988877542 10 0 00100 00 000000
Q ss_pred ----------------HhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001249 280 ----------------IAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1114)
Q Consensus 280 ----------------~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1114)
.++.-.....+|..++..+..++.+ -++. .-+.-++...+...+.+.
T Consensus 245 ~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~----~~~~---~~~~~~l~RvI~~~~~~~---------- 307 (728)
T KOG4535|consen 245 VVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARY----FSMT---QAYLMELGRVICKCMGEA---------- 307 (728)
T ss_pred eecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHccCCCC----------
Confidence 0000011233566666666666652 1111 122233333333333222
Q ss_pred CCCccccCCCchhhHHHHHHHHHHHcC----CCcchHHH-HH-HH---------HHhhCCCChhHHHHHHHHHHHHHhhc
Q 001249 344 TEDEDAGESSNYSVGQECLDRLAIALG----GNTIVPVA-SE-QL---------PAYLAAPEWQKHHAALIALAQIAEGC 408 (1114)
Q Consensus 344 ~~~ed~~~~~~~~~a~~~l~~l~~~~~----~~~~~~~l-~~-~l---------~~~l~~~~~~~r~aal~~l~~l~~~~ 408 (1114)
+.+.|.-+..+++.+...++ ++..-..+ .. +- .....+..+....+++.++..+....
T Consensus 308 -------~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~ 380 (728)
T KOG4535|consen 308 -------DPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEA 380 (728)
T ss_pred -------ChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchh
Confidence 22244456666666655443 11110000 00 00 01111223444556666666654432
Q ss_pred HHHHHHhHHHHHHHHHhcCCC-CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHH
Q 001249 409 AKVMVKNLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1114)
Q Consensus 409 ~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~ 487 (1114)
.+.+.+.-....+.++.+-.| .+..||.+|..+++.+.-+-+-.....+.......++..+.| +.-.+|..+.+++++
T Consensus 381 f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d-~~ln~r~Kaawtlgn 459 (728)
T KOG4535|consen 381 FSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED-KSLNVRAKAAWSLGN 459 (728)
T ss_pred hcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh-HhHhHHHHHHHHhhh
Confidence 221212222344444444444 556678889999988775443322234667777888888888 778899999999999
Q ss_pred hhhcCCcc------cccCchHHHHHHHHHHhhc---CChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHh-hcc
Q 001249 488 FSENCTPE------ILTPYLDGIVSKLLVLLQN---GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV-NAT 557 (1114)
Q Consensus 488 l~~~~~~~------~l~~~l~~il~~L~~~l~~---~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~-~~~ 557 (1114)
+.+.+-.. .-..+...++..+...... .+.+|+..+..++|++......-..+-+..+++.=+..+. ...
T Consensus 460 ITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~ 539 (728)
T KOG4535|consen 460 ITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVL 539 (728)
T ss_pred hHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhccccee
Confidence 87654221 1112334445554443322 3478999999999998887664433333333332222211 111
Q ss_pred CccchhhhHHHHHHHHHHHH
Q 001249 558 DKSNRMLRAKSMECISLVGM 577 (1114)
Q Consensus 558 ~~~~~~lr~~a~~~l~~i~~ 577 (1114)
-+....+|-.+.-++|.+.+
T Consensus 540 ~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 540 TEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred cccccccchHHHHHHHHhhc
Confidence 22344566666666666543
No 95
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=98.17 E-value=0.00018 Score=65.87 Aligned_cols=154 Identities=29% Similarity=0.399 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhhchh-hhHHHHHHHHHHHHHhcc--cCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhh-hhhhhhh
Q 001249 103 SLKSMLLQSIQLESA-KSISKKLCDTVSELASNI--LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS-QYIGDTL 178 (1114)
Q Consensus 103 ~i~~~ll~~l~~e~~-~~vr~~~~~~i~~ia~~~--~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~-~~~~~~~ 178 (1114)
.||..|+..|..+.. ...-+.++++++.+|... .+++.|++|.+.+.... .+++ ..|+.++..+. ...++.+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhhhhHH
Confidence 477888888886532 334455666666666544 46789999998887765 2222 56999999998 5566667
Q ss_pred hhhHHHHHHHHHHhhcCCCChHH--HHHHH-HHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCH-HHHHHHHHH
Q 001249 179 TPHLKHLHAVFLNCLTNSNNPDV--KIAAL-NAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNE-ATAQEALEL 254 (1114)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~v--r~~a~-~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~-~~~~~~~~~ 254 (1114)
.++++.+++.+.+.|.++.+.++ ...|+ .++...+..++.....+.+.+++|.+++.+.+..+.+.+ .....+++-
T Consensus 79 ~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~ 158 (174)
T PF04510_consen 79 IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRD 158 (174)
T ss_pred HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 88999999999999998743333 34555 444556666665556788999999999999999988777 777777777
Q ss_pred HHHHHc
Q 001249 255 LIELAG 260 (1114)
Q Consensus 255 l~~l~~ 260 (1114)
+-.++.
T Consensus 159 ~e~~v~ 164 (174)
T PF04510_consen 159 FESFVS 164 (174)
T ss_pred HHHHHH
Confidence 766554
No 96
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.0065 Score=69.29 Aligned_cols=182 Identities=15% Similarity=0.158 Sum_probs=122.7
Q ss_pred ChhHHHHHHHHHHHHHh-hcHHHHHH-hHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHH
Q 001249 390 EWQKHHAALIALAQIAE-GCAKVMVK-NLEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 466 (1114)
Q Consensus 390 ~~~~r~aal~~l~~l~~-~~~~~~~~-~l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~ 466 (1114)
++.....++.-+..+.. +..+.+.. -++.++|.++..|+++ |+.+...||.||..+++.+++....-.....+|.++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 45444444444444332 22223322 2467899999999875 688999999999999999988762222345889998
Q ss_pred hhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhh
Q 001249 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVM 546 (1114)
Q Consensus 467 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~ 546 (1114)
..|..-..-+|.+.+..||..+....+..++..- . +...+..++=-+..+++.|+.+.+.+|..+..+--.|+-..+
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG--~-l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~eal 337 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRRHPKAILQAG--A-LSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEAL 337 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcc--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 8776545678899999999999887765544321 1 223333444345678889999999999988876556777889
Q ss_pred HHHHHHHhhccCccchhhhHHHHHHHHHHHHH
Q 001249 547 PFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1114)
Q Consensus 547 ~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1114)
|.|..+++..+. ..-..+.-|+..++..
T Consensus 338 PlL~~lLs~~D~----k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 338 PLLTPLLSYQDK----KPIESVCICLTRIADG 365 (1051)
T ss_pred HHHHHHHhhccc----hhHHHHHHHHHHHHHh
Confidence 999999876432 2233345577777754
No 97
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.066 Score=67.17 Aligned_cols=193 Identities=13% Similarity=0.075 Sum_probs=123.7
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC---ChhhHHHHHHHHHHhhhhhhhhhhhh
Q 001249 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD---SVKLQESAFLIFAQLSQYIGDTLTPH 181 (1114)
Q Consensus 105 ~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~---~~~~r~~al~~l~~l~~~~~~~~~~~ 181 (1114)
...+...+..-..+.+|+.++.+++.+... +..-.-..++......+.+. ++..+.+++.+++..-+..+.....-
T Consensus 53 ~~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~ 131 (2067)
T KOG1822|consen 53 EQQLISRLTNGAGPPTRKLISVAIARLISN-GDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRG 131 (2067)
T ss_pred HHHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcch
Confidence 345666666667889999999999988774 21111223333333334333 34566778889999999988877766
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001249 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1114)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 261 (1114)
+...+++|.+..+.. ...+|......+.+....+..... .......++......+.+....++..+.+|+..+...
T Consensus 132 ~edt~~if~~~~k~n-~s~~~~~i~~~l~~~~~~~g~~s~---~~~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~ 207 (2067)
T KOG1822|consen 132 LEDTVQIFTKLVKTN-ESFVRQEIMITLHNALKGMGGTSA---ATATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNL 207 (2067)
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHhccchH---HHHHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhh
Confidence 888889999888875 667788777777777666542111 1122223444445555555666888888888877765
Q ss_pred chHHH-HHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHh
Q 001249 262 EPRFL-RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1114)
Q Consensus 262 ~~~~~-~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1114)
.+..+ ..-+.....++++... .....+|..-.+++.++...
T Consensus 208 ~~~~~~~Sele~~~s~cfk~~~--~s~~~~r~a~a~~~~~Lla~ 249 (2067)
T KOG1822|consen 208 GGPGLGTSELETLASYCFKGIE--ISNSEVRCAVAEFLGSLLAL 249 (2067)
T ss_pred cCccccchhhhhhcceeeeeec--cchHHHHHHHHHHHHHHHhc
Confidence 55444 3344455555555442 34567888878888887764
No 98
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.011 Score=59.52 Aligned_cols=349 Identities=16% Similarity=0.176 Sum_probs=187.3
Q ss_pred ChhhHHH---HHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHH
Q 001249 156 SVKLQES---AFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLM 232 (1114)
Q Consensus 156 ~~~~r~~---al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~l 232 (1114)
+.++|+. ...+|..+.+.... ....+++.|.+..+|..+ +..|+..+++.++.+++..+.....+...-.-..+
T Consensus 53 NenhrekttlcVscLERLfkakeg--ahlapnlmpdLQrGLiad-dasVKiLackqigcilEdcDtnaVseillvvNaei 129 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIAD-DASVKILACKQIGCILEDCDTNAVSEILLVVNAEI 129 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccc--hhhchhhhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhH
Confidence 4566766 45555555543211 124567888999999997 89999999999999998763221111111111246
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHH--HHHhccCCcchhHHHHHHHHHHHHHHhhhccc
Q 001249 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSM--LQIAEAESLEEGTRHLAIEFVITLAEARERAP 309 (1114)
Q Consensus 233 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l--l~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 309 (1114)
++.+..++...+.++.+.+.+.+..++.. +..+...++ ++.+-+ .++.. ..++-+|...++.+..+... .|
T Consensus 130 lklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaa--kcndiaRvRVleLIieifSi---Sp 203 (524)
T KOG4413|consen 130 LKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAA--KCNDIARVRVLELIIEIFSI---SP 203 (524)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHh--hhhhHHHHHHHHHHHHHHhc---CH
Confidence 66777778788999999999999887643 222221111 000000 00000 12344566667777666552 22
Q ss_pred hhhhcchhhH--HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHH--HHHHHHHh
Q 001249 310 GMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPV--ASEQLPAY 385 (1114)
Q Consensus 310 ~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--l~~~l~~~ 385 (1114)
. ..++. ..++..+..-|...+|. -...-..+....++..-.+..+++. +++.+...
T Consensus 204 e----saneckkSGLldlLeaElkGteDt----------------LVianciElvteLaeteHgreflaQeglIdlicnI 263 (524)
T KOG4413|consen 204 E----SANECKKSGLLDLLEAELKGTEDT----------------LVIANCIELVTELAETEHGREFLAQEGLIDLICNI 263 (524)
T ss_pred H----HHhHhhhhhHHHHHHHHhcCCcce----------------eehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHH
Confidence 1 11121 33555555555443221 0111112233333333222445443 56666666
Q ss_pred hC--CCChhHHHHHHHHHHHHHhh------cHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhch-hHHhh
Q 001249 386 LA--APEWQKHHAALIALAQIAEG------CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-DLQNQ 456 (1114)
Q Consensus 386 l~--~~~~~~r~aal~~l~~l~~~------~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~ 456 (1114)
+. +.++..+.-++..++.+... .++.+-+.+...+.-.+..+...+|....+|..++|.+...... ++..+
T Consensus 264 IsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllk 343 (524)
T KOG4413|consen 264 ISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLK 343 (524)
T ss_pred hhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhc
Confidence 65 45677777677777665432 22333344455556666666777888999999999999865532 22122
Q ss_pred hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC--cccccC----------chH--------HHHHHHHHHhhcCC
Q 001249 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT--PEILTP----------YLD--------GIVSKLLVLLQNGK 516 (1114)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~--~~~l~~----------~l~--------~il~~L~~~l~~~~ 516 (1114)
.-+.-...++....+.....-+..+..+|..+..... ++.+.. .++ +-+..+...++.+.
T Consensus 344 TgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpf 423 (524)
T KOG4413|consen 344 TGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPF 423 (524)
T ss_pred cCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCC
Confidence 2233333444333331222334667777777664432 111111 001 11233445566778
Q ss_pred hhHHHHHHHHHHHHHHh
Q 001249 517 QMVQEGALTALASVADS 533 (1114)
Q Consensus 517 ~~v~~~al~~l~~l~~~ 533 (1114)
++++..++.++..++..
T Consensus 424 pEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 424 PEIHCAALKTFTAIAAQ 440 (524)
T ss_pred hhhHHHHHHHHHHHHcC
Confidence 89999999998888753
No 99
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=0.04 Score=62.28 Aligned_cols=182 Identities=13% Similarity=0.142 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhc-CCCC----------HHHHHHHHHHHHHHHhH--hhh-hhhhh
Q 001249 855 EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWG-KDKT----------AEERRIAICIFDDVAEQ--CRE-AALKY 920 (1114)
Q Consensus 855 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~-~~~~----------~~~r~~a~~~l~~~~~~--~~~-~~~~~ 920 (1114)
.++..+..++..++|..+....|+++.++..+.+.+. +-++ .+...+.+..+|-++.. .++ .-..|
T Consensus 550 ~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay 629 (980)
T KOG2021|consen 550 NVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAY 629 (980)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHH
Confidence 4566677788888888888888888887777666551 1110 01111222223322211 111 11113
Q ss_pred hHhHHH---------HH-HHhccCCCh----hHHhhhhHHHHHHHhhcCCCc--------hHHHHHHHHHHHHhhcCCCC
Q 001249 921 YETYLP---------FL-LEACNDENQ----DVRQAAVYGLGVCAEFGGSVV--------KPLVGEALSRLNVVIRHPNA 978 (1114)
Q Consensus 921 ~~~i~~---------~l-l~~l~~~~~----~vr~~a~~~lg~l~~~~~~~~--------~~~~~~~l~~L~~~l~~~~~ 978 (1114)
...++. .. .+.-.|++. .-+.+++.++|.+++.-.... ...+.++++.+...+.....
T Consensus 630 ~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k 709 (980)
T KOG2021|consen 630 ANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNK 709 (980)
T ss_pred HhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccc
Confidence 222222 11 122234432 335566778999988665322 12355667777777765432
Q ss_pred CChhhhhhHHHHHHHHHHHHhhcCCCC-C-HhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCc
Q 001249 979 LQPENLMAYDNAVSALGKICQFHRDSI-D-AAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSD 1044 (1114)
Q Consensus 979 ~~~~~~~~~~na~~al~~l~~~~~~~~-~-~~~~~~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~ 1044 (1114)
....|+.+-..++||+..-+..+ | +++.+..+|+ ..|..|-......+..|+...+.+
T Consensus 710 ----~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~----s~d~kEmvdfl~flsQLihkfk~~ 769 (980)
T KOG2021|consen 710 ----FENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLS----STDLKEMVDFLGFLSQLIHKFKTD 769 (980)
T ss_pred ----cchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888899999999877765 3 4444444443 344556555666666666555543
No 100
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0081 Score=60.55 Aligned_cols=292 Identities=15% Similarity=0.206 Sum_probs=173.2
Q ss_pred HHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhh-hhh----hHHHHHHHHHHhhcCCCC
Q 001249 124 LCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LTP----HLKHLHAVFLNCLTNSNN 198 (1114)
Q Consensus 124 ~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~-~~~----~~~~l~~~l~~~l~~~~~ 198 (1114)
...++..+.+...+..--|+++|.+...+..++..++..++..++.+.++.... ..+ .-..+++.++.++... +
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-d 141 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-D 141 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-c
Confidence 345666666655665667999999999999999999999999999999876522 111 2356888999999887 8
Q ss_pred hHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHH-HHHH--HHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHH-HHHH
Q 001249 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPL-MMRT--LTESLNNGNEATAQEALELLIELAGTEPRFLRRQL-VDVV 274 (1114)
Q Consensus 199 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~-ll~~--l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~ 274 (1114)
.+|-.+|++.+..+..+- ..+..++|. ++.- +.......+.-.|..+++.+.++....+......- ..++
T Consensus 142 deVAkAAiesikrialfp------aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLl 215 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALFP------AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLL 215 (524)
T ss_pred HHHHHHHHHHHHHHHhcH------HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHH
Confidence 899999999998887641 111111110 0000 01111122445677788888888776665443221 2455
Q ss_pred HHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCcccccCCCCCccccCC
Q 001249 275 GSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHSAETEDEDAGES 352 (1114)
Q Consensus 275 ~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~ 352 (1114)
..+..-+.- ..|.-++..++++...+++... -..|+ +.++..+.+.+...+.++
T Consensus 216 dlLeaElkG-teDtLVianciElvteLaeteH--------greflaQeglIdlicnIIsGadsdP--------------- 271 (524)
T KOG4413|consen 216 DLLEAELKG-TEDTLVIANCIELVTELAETEH--------GREFLAQEGLIDLICNIISGADSDP--------------- 271 (524)
T ss_pred HHHHHHhcC-CcceeehhhHHHHHHHHHHHhh--------hhhhcchhhHHHHHHHHhhCCCCCc---------------
Confidence 555543321 1244578899999999988521 12333 346777766665443322
Q ss_pred CchhhHHHHHHHHHHHcCCCc--------c---hHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcH--HHHHHhHHHH
Q 001249 353 SNYSVGQECLDRLAIALGGNT--------I---VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA--KVMVKNLEQV 419 (1114)
Q Consensus 353 ~~~~~a~~~l~~l~~~~~~~~--------~---~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~--~~~~~~l~~i 419 (1114)
+.. ...+--+...+|... + ++..+.-..+++..+++....+|+.++|.+..... +.+.+.-+.-
T Consensus 272 --fek-fralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppa 348 (524)
T KOG4413|consen 272 --FEK-FRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPA 348 (524)
T ss_pred --HHH-HHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChH
Confidence 211 112222333333221 1 22233333456667889999999999999977543 2222222334
Q ss_pred HHHHHhcCCCCChhH-HHHHHHHHHHhHhhh
Q 001249 420 LSMVLNSFRDPHPRV-RWAAINAIGQLSTDL 449 (1114)
Q Consensus 420 ~~~l~~~l~d~~~~v-r~~a~~~l~~l~~~~ 449 (1114)
...++....|.+..- +.++..+|..++..+
T Consensus 349 aehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 349 AEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 444555555555433 456778888877654
No 101
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.044 Score=62.46 Aligned_cols=290 Identities=19% Similarity=0.208 Sum_probs=171.0
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001249 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1114)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~ 260 (1114)
....+.+.+-.++.+. ...|-..|.+++..+-.... ..+-| -+..+..++.++....|..+++.|.+++.
T Consensus 242 ~~s~~~~fl~s~l~~K-~emV~~EaArai~~l~~~~~--------r~l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHK-SEMVIYEAARAIVSLPNTNS--------RELAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred chhhHHHHHHHHHhch-hHHHHHHHHHHHhhccccCH--------hhcch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3456677777888876 77788888888776655431 12222 45566666678888899999999999998
Q ss_pred cchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 001249 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1114)
Q Consensus 261 ~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1114)
.+|....-.-.++-+ +.+ +.+..+...|+. ++.+. . ...-+..+...+...+.+..|+
T Consensus 312 ~~P~~v~~cN~elE~----lIt--d~NrsIat~AIT---tLLKT---G------~e~sv~rLm~qI~~fv~disDe---- 369 (865)
T KOG1078|consen 312 KHPQAVTVCNLDLES----LIT--DSNRSIATLAIT---TLLKT---G------TESSVDRLMKQISSFVSDISDE---- 369 (865)
T ss_pred hCCccccccchhHHh----hhc--ccccchhHHHHH---HHHHh---c------chhHHHHHHHHHHHHHHhcccc----
Confidence 877543321111111 111 223334444443 33331 0 1123344444444445444321
Q ss_pred cCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHH
Q 001249 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (1114)
Q Consensus 341 ~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i 419 (1114)
-..+..+++..++..++. -...+++++...+. +.....+.+.+.++..+++..++.-..-+..+
T Consensus 370 -------------FKivvvdai~sLc~~fp~--k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~L 434 (865)
T KOG1078|consen 370 -------------FKIVVVDAIRSLCLKFPR--KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHL 434 (865)
T ss_pred -------------ceEEeHHHHHHHHhhccH--HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 122455677777777753 23346677766665 44677788888888888876554333344444
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHH-hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc
Q 001249 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1114)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~ 498 (1114)
..++..+ ..+..+...|+.+....+.... ..|...+...+ .= .+..||.+|..+|..|.... ..+
T Consensus 435 CefIEDc------e~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv----iL-En~ivRaaAv~alaKfg~~~--~~l- 500 (865)
T KOG1078|consen 435 CEFIEDC------EFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV----IL-ENAIVRAAAVSALAKFGAQD--VVL- 500 (865)
T ss_pred HHHHHhc------cchHHHHHHHHHHhccCCCCCCcchhhHHHhhhh----hh-hhhhhHHHHHHHHHHHhcCC--CCc-
Confidence 4444333 2455566666666665542210 23444333332 22 46889999999999998322 222
Q ss_pred CchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001249 499 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1114)
Q Consensus 499 ~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1114)
.+.+...|..++.+.+..+|+.|--.+..+-..
T Consensus 501 --~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 501 --LPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred --cccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 455666677888999999999998888777643
No 102
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.0053 Score=65.17 Aligned_cols=308 Identities=15% Similarity=0.118 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHh-hhhhhhHHH-HHhhc-
Q 001249 393 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN-QFHPQVLPA-LAGAM- 469 (1114)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~il~~-l~~~l- 469 (1114)
.|..++..+..++.+.+ ....++-++...+..++.+..|.++..+..++..+...+...... ..-..+... +...+
T Consensus 271 ~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l 349 (728)
T KOG4535|consen 271 MRLEALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMML 349 (728)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHc
Confidence 45555566666655433 234566778888999999999999999988887776655311100 001111111 11111
Q ss_pred --------cCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHH-HHHhhcCChhHHHHHHHHHHHHHHhhhhhh-h
Q 001249 470 --------DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL-LVLLQNGKQMVQEGALTALASVADSSQEHF-Q 539 (1114)
Q Consensus 470 --------~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L-~~~l~~~~~~v~~~al~~l~~l~~~~~~~~-~ 539 (1114)
-|...+..+.++|.++.++....... +..--....+.+ ..+-++.+.-++..|+.+.+..+-+-+... .
T Consensus 350 ~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~-lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~ 428 (728)
T KOG4535|consen 350 NGPLPRALYDSEHPTLQASACDALSSILPEAFSN-LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDV 428 (728)
T ss_pred cCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC-CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhH
Confidence 11134456678888888775432211 111111222322 333344556678888887776543322111 1
Q ss_pred hhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchh--hhhhhHHHHHHHHHH-Hh---cCCCCCCCchhhHH
Q 001249 540 KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKD--KFRDDAKQVMEVLMS-LQ---GSQMETDDPTTSYM 613 (1114)
Q Consensus 540 ~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~--~f~~~~~~i~~~l~~-~~---~~~~~~~~~~~~~~ 613 (1114)
-+.......+...+. +.....|.++.-++|.|..++-.. ........+...++. ++ +..--..+.++..+
T Consensus 429 ~fv~~aa~~il~sl~----d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~na 504 (728)
T KOG4535|consen 429 IFVADAANAILMSLE----DKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNA 504 (728)
T ss_pred HHHHHHHHHHHHHhh----hHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence 122222222222222 123446888888888888765311 111122233322221 11 11111234578888
Q ss_pred HHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHH
Q 001249 614 LQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACN 693 (1114)
Q Consensus 614 ~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~ 693 (1114)
+++++++.+.+..-..+-+..+++--...+.. . ....+.+..|=.||.
T Consensus 505 vraLgnllQvlq~i~~~~~~e~~~~~~~~l~~-----------------------~---------v~~~~~~kV~WNaCy 552 (728)
T KOG4535|consen 505 VRALGNLLQFLQPIEKPTFAEIIEESIQALIS-----------------------T---------VLTEAAMKVRWNACY 552 (728)
T ss_pred HHHHhhHHHHHHHhhhccHHHHHHHHHHhccc-----------------------c---------eecccccccchHHHH
Confidence 88888877665433333333333221111100 0 001122334557899
Q ss_pred HHHHHHHHh--hhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHH
Q 001249 694 MLCCYADEL--KEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMP 738 (1114)
Q Consensus 694 ~l~~~~~~~--~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~ 738 (1114)
+++.+.++- +-.=.|+.+.+++.+..++.+..|-.||..|+.+|.
T Consensus 553 a~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 553 AMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred HHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhc
Confidence 999998763 333357889999999888888778899988888865
No 103
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.04 E-value=1.3e-05 Score=73.34 Aligned_cols=111 Identities=23% Similarity=0.251 Sum_probs=88.3
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh-hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc
Q 001249 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1114)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1114)
+++.+...+.+.++.+|..++++++.++....+.. ..+.. .++|.+.+.+.+ ++++++..++++|.+++...+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 56777888889999999999999999997643333 33333 899999999999 8999999999999999886542211
Q ss_pred cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001249 498 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1114)
Q Consensus 498 ~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~ 531 (1114)
...-..+++.+...+++.+..+++.++.++..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1122347889999999999999999999998876
No 104
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.03 E-value=0.053 Score=63.40 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=115.7
Q ss_pred hHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHH
Q 001249 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1114)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1114)
++.+++.+...+.+.+...|.-...-+-..++..++ ..--.++.+.+-++|+|+.+|..|+.+++.+-.
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~----~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~------- 121 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE----LALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV------- 121 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH----HHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh-------
Confidence 666777776666688888888888888888887763 222356788889999999999999999987632
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHH-HHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001249 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG-IVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1114)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~-il~~L~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1114)
...++.+++.+.+++++ +++.||..|+.|+..+.+.-. +. |.+. ....+..++.+.++.+...|+.++..+...
T Consensus 122 ~el~~~~~~~ik~~l~d-~~ayVRk~Aalav~kly~ld~-~l---~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 122 KELLGNIIDPIKKLLTD-PHAYVRKTAALAVAKLYRLDK-DL---YHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHHHccC-CcHHHHHHHHHHHHHHHhcCH-hh---hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 35678899999999999 999999999999998875432 21 2222 455666677899999999988888777654
Q ss_pred hhhhhhhhHhhhhH
Q 001249 534 SQEHFQKYYDAVMP 547 (1114)
Q Consensus 534 ~~~~~~~~~~~i~~ 547 (1114)
...+|+..+.-
T Consensus 197 ---~a~~~~~~~~~ 207 (757)
T COG5096 197 ---LAHGYSLEVIL 207 (757)
T ss_pred ---hhhhHHHHHHH
Confidence 33445544433
No 105
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.02 E-value=3.1e-05 Score=73.87 Aligned_cols=128 Identities=22% Similarity=0.331 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhh----------------hhhhh
Q 001249 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD----------------TLTPH 181 (1114)
Q Consensus 118 ~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~----------------~~~~~ 181 (1114)
+-||+++|.+++.++.+++| ..||++++.+.+.+++ ++..+..++.+|..+.+++.+ .+...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 46899999999999999999 7899999999999987 577888999999999988753 12335
Q ss_pred HHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 001249 182 LKHLHAVFLNCLTNSNN---PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1114)
Q Consensus 182 ~~~l~~~l~~~l~~~~~---~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l 255 (1114)
.+.++..+.+.++...+ ..+...+++++.+++.+.+ .+.+.. ..+++.++..++ +++.+..|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~----~~~i~~--~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP----IELIIN--SNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-----HHHHHS--SSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC----HHHhcc--HHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 66777888777775422 7889999999999998763 222221 135666666664 445577777765
No 106
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.01 E-value=0.00074 Score=71.65 Aligned_cols=204 Identities=13% Similarity=0.187 Sum_probs=142.8
Q ss_pred HHHHHHHHhhCCCChhHHHHHHH-HHHHHHhhcHHHHHHhHHHHHHHHHhcCCC-CChhHHHHHHHHHHHhHhhhchhHH
Q 001249 377 VASEQLPAYLAAPEWQKHHAALI-ALAQIAEGCAKVMVKNLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQ 454 (1114)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~-~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1114)
.+...+.+.-.+..-..|..|+. ..+-+.++.-..-.+|+..|+..++..|.| .+...|..|+..|+.+++.-+..+
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l- 365 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL- 365 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh-
Confidence 34444455444555667777777 555566665556678999999999999999 888999999999999998766555
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHH-HHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001249 455 NQFHPQVLPALAGAMDDFQNPRVQAHAAS-AVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1114)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~-al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1114)
.++....+..+++.-.| .++.|-..|.. ++..+....+. ..+..+.+ ++...+...-..++..+..++..
T Consensus 366 ~DstE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~----~~I~~i~~----~Ilt~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPL----QCIVNISP----LILTADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred hchHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCch----hHHHHHhh----HHhcCcchHHHHHHHHHHHHHhh
Confidence 67777788888888888 55555444443 44444443331 12233333 33334555555677777888777
Q ss_pred hh-hhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHH
Q 001249 534 SQ-EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEV 594 (1114)
Q Consensus 534 ~~-~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~ 594 (1114)
.. +.+.+.++.++|.+++...+. ...+|..|+-|+-.+...+|.+.+.||+.++-..
T Consensus 437 l~~EeL~~ll~diaP~~iqay~S~----SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~s 494 (516)
T KOG2956|consen 437 LSAEELLNLLPDIAPCVIQAYDST----SSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSS 494 (516)
T ss_pred cCHHHHHHhhhhhhhHHHHHhcCc----hHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHH
Confidence 65 457788899999998876543 3468999999999999999988899998876443
No 107
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.051 Score=61.47 Aligned_cols=518 Identities=16% Similarity=0.165 Sum_probs=239.3
Q ss_pred HHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC--ChhhHHHHHHHH-HHhhhhhhh--
Q 001249 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIF-AQLSQYIGD-- 176 (1114)
Q Consensus 102 ~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~--~~~~r~~al~~l-~~l~~~~~~-- 176 (1114)
..+++.+.+.+. .++.+|..+-.-+-.+ ..-|.++-.+.+.+.+. +.++|..|..-+ ..+......
T Consensus 3 ~ellqcf~qTld--ada~~rt~AE~~Lk~l-------eKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~ 73 (970)
T COG5656 3 EELLQCFLQTLD--ADAGKRTIAEAMLKDL-------EKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKR 73 (970)
T ss_pred HHHHHHHHHHhc--cCcchhhHHHHHHHHh-------hcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcc
Confidence 445566666666 4788888765544433 23477888888776543 456665554433 344433211
Q ss_pred ------hhhh-hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHH
Q 001249 177 ------TLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQ 249 (1114)
Q Consensus 177 ------~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~ 249 (1114)
+-.+ .-..++.-++..+.. ++.+-..+..++...+-.-+. + .++++ +.......+.+++.....
T Consensus 74 d~~i~~Dek~e~K~~lienil~v~l~--sp~~tr~~l~ail~~I~seD~---p---s~~wg-l~p~~~nll~s~ea~~vy 144 (970)
T COG5656 74 DDGIKADEKSEAKKYLIENILDVFLY--SPEVTRTALNAILVNIFSEDK---P---SDLWG-LFPKAANLLRSSEANHVY 144 (970)
T ss_pred cCCCCCcccHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHhccccC---c---hhhcc-cchHHHHhhcccchhHHH
Confidence 0111 122334444443333 334444455555555433211 1 12333 334444455577888888
Q ss_pred HHHHHHHHHHccch-------HHHHHHHHHHHHHHHHHhccCCc--ch---hHHHHHHHHHHHHHHhhhccchhhhcchh
Q 001249 250 EALELLIELAGTEP-------RFLRRQLVDVVGSMLQIAEAESL--EE---GTRHLAIEFVITLAEARERAPGMMRKLPQ 317 (1114)
Q Consensus 250 ~~~~~l~~l~~~~~-------~~~~~~~~~l~~~ll~~~~~~~~--~~---~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 317 (1114)
.++.|+.++++.+. ..+.+....+++.+.++.++-.. +. ++-...+......|-+ .-|...... .
T Consensus 145 ~gLlcl~elfkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~--~LP~~lsa~-e 221 (970)
T COG5656 145 TGLLCLEELFKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY--SLPDFLSAI-E 221 (970)
T ss_pred HHHHHHHHHHHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh--hCCHHHccc-h
Confidence 99999999988663 22445555667777766543221 12 1222222322333321 122111111 1
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCch-h---hHHHHHHHHHHHcCCC--------------cchHHH-
Q 001249 318 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNY-S---VGQECLDRLAIALGGN--------------TIVPVA- 378 (1114)
Q Consensus 318 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~-~---~a~~~l~~l~~~~~~~--------------~~~~~l- 378 (1114)
.+...+...+..+..+-..+.... |.|+. ..+.| + =|.-.+.++.+.++.. .++|.+
T Consensus 222 ~f~sw~ql~l~i~qkplp~evlsl---dpevR-s~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il 297 (970)
T COG5656 222 TFSSWFQLSLRILQKPLPNEVLSL---DPEVR-SLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMIL 297 (970)
T ss_pred hhHHHHHHHHHHHcCCCCHHHhcc---Chhhc-cccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 112223333333333221110100 11111 11112 1 2444555555544421 122322
Q ss_pred ---HHHHHHhhCCCChhHHHHHHHHHHHHHhhcHH------HHHHhHHHHHH-HHHhcCCCCChhHHHHHHHHHHHhHhh
Q 001249 379 ---SEQLPAYLAAPEWQKHHAALIALAQIAEGCAK------VMVKNLEQVLS-MVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1114)
Q Consensus 379 ---~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~------~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1114)
+..+..+-+++-|-. ...+..++...+.|.+ .+.+|+.-++. .+++++.-..... .+
T Consensus 298 ~tffkqie~wgqgqLWls-d~~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~e---------El--- 364 (970)
T COG5656 298 ATFFKQIEEWGQGQLWLS-DIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEE---------EL--- 364 (970)
T ss_pred HHHHHHHHHhhcCCeecc-hHHHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhH---------HH---
Confidence 222333333444543 3456666666666542 44566666554 3444432211100 00
Q ss_pred hchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhh----c----CChhHH
Q 001249 449 LGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ----N----GKQMVQ 520 (1114)
Q Consensus 449 ~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~----~----~~~~v~ 520 (1114)
+..+- .+|....+. ...+...+.+ +|...+......-+.. .+..+++.+...+. + .+..-.
T Consensus 365 fEnDp-~eyirry~d----f~d~g~spdl--aal~fl~~~~sKrke~----TfqgiLsf~~sil~qsaa~psn~dnarq~ 433 (970)
T COG5656 365 FENDP-DEYIRRYYD----FFDNGLSPDL--AALFFLIISKSKRKEE----TFQGILSFLLSILGQSAATPSNIDNARQA 433 (970)
T ss_pred HhcCH-HHHHHHhcc----hhcCCCChhH--HHHHHHHHHhcccchh----hhhhHHHHHHHHHhcccCCCCccccHHHH
Confidence 11111 123322222 2222123443 2223332222222222 24555555555552 1 134555
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhh----hhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHH
Q 001249 521 EGALTALASVADSSQEHFQKYYDA----VMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 596 (1114)
Q Consensus 521 ~~al~~l~~l~~~~~~~~~~~~~~----i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~ 596 (1114)
+.++..++++..... ...|..+. +++.+...++ .....+|++|++.++.+..-.... ..+.++++...
T Consensus 434 egalr~lasi~s~it-k~sp~an~me~fiv~hv~P~f~----s~ygfL~Srace~is~~eeDfkd~---~ill~aye~t~ 505 (970)
T COG5656 434 EGALRLLASIKSFIT-KMSPAANVMEYFIVNHVIPAFR----SNYGFLKSRACEFISTIEEDFKDN---GILLEAYENTH 505 (970)
T ss_pred hhHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhhHhhc----CcccchHHHHHHHHHHHHHhcccc---hHHHHHHHHHH
Confidence 678888887776222 12222221 3344444333 345679999999998884332211 12334444444
Q ss_pred HHhcCCCCCCCchhhHHHHHHHHHHH--HhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcC
Q 001249 597 SLQGSQMETDDPTTSYMLQAWARLCK--CLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLG 674 (1114)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1114)
+...+ .+.|++-.+.-|+..+.. ...+.|..|+|.+|+.++...+. -+.
T Consensus 506 ncl~n---n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~--------------------fei------ 556 (970)
T COG5656 506 NCLKN---NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT--------------------FEI------ 556 (970)
T ss_pred HHHhc---CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc--------------------ccc------
Confidence 43221 345666655555554433 23455778888888888877632 000
Q ss_pred CceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhh
Q 001249 675 DKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP 719 (1114)
Q Consensus 675 ~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~ 719 (1114)
.+.+. ++..++...++.+.||.++++..+.+
T Consensus 557 ----D~LS~----------vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 557 ----DPLSM----------VMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred ----hHHHH----------HHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 01122 44567777777788888777766654
No 108
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.98 E-value=0.00089 Score=71.06 Aligned_cols=203 Identities=15% Similarity=0.210 Sum_probs=135.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHH-HHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccch
Q 001249 232 MMRTLTESLNNGNEATAQEALE-LLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG 310 (1114)
Q Consensus 232 ll~~l~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 310 (1114)
+.+.+.+.-.+...+.++.++. +..-+++........|+..|+..+++++++. .++..|..|+..+..+++. .|.
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~-~~~~~k~laLrvL~~ml~~---Q~~ 363 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDS-EDEIIKKLALRVLREMLTN---QPA 363 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccc-hhhHHHHHHHHHHHHHHHh---chH
Confidence 3344444333445567777776 4444555555667789999999999988753 4677889999999999984 342
Q ss_pred hhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCC
Q 001249 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPE 390 (1114)
Q Consensus 311 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~ 390 (1114)
++.+..+-.+-.++..-.+..+ .....++..|+..++.+.| -.-+..+.+.+ .+.+
T Consensus 364 ---~l~DstE~ai~K~Leaa~ds~~----------------~v~~~Aeed~~~~las~~P-~~~I~~i~~~I----lt~D 419 (516)
T KOG2956|consen 364 ---RLFDSTEIAICKVLEAAKDSQD----------------EVMRVAEEDCLTTLASHLP-LQCIVNISPLI----LTAD 419 (516)
T ss_pred ---hhhchHHHHHHHHHHHHhCCch----------------hHHHHHHHHHHHHHHhhCc-hhHHHHHhhHH----hcCc
Confidence 2333444444444443332211 1233455667777887776 33333333433 3355
Q ss_pred hhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhc-hhHHhhhhhhhHH
Q 001249 391 WQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG-PDLQNQFHPQVLP 463 (1114)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~il~ 463 (1114)
...-.+++..+..+.+..+ +.+...++++.|.++++..+.+..||.+|.+||-.+...++ ..+ .+|+.++-.
T Consensus 420 ~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~m-ePhL~~Lt~ 493 (516)
T KOG2956|consen 420 EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEM-EPHLEQLTS 493 (516)
T ss_pred chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhh-hhHhhhccH
Confidence 5555677778888888776 57788999999999999999999999999999999998888 555 666665433
No 109
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.0076 Score=68.68 Aligned_cols=430 Identities=16% Similarity=0.204 Sum_probs=238.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001249 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1114)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~ 99 (1114)
.+..++....+++...|.-|-..+-.+.- + .+..+++.-+. ++.++.+|..|++...++...+ . +-.
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l~v--~-~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~-~------~~~ 156 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCLRV--D-KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID-P------DLV 156 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeEee--h-HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC-h------hhc
Confidence 34455666778888889888776554432 1 23455554443 3778999999999999876553 0 111
Q ss_pred HHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCc----hhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhh
Q 001249 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW----PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG 175 (1114)
Q Consensus 100 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w----~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~ 175 (1114)
....+-..|-+.+.+ .++.|-..+..++..|....-. ..- +.++..++..+..-+. =+-+.++..+.++.+
T Consensus 157 ~~~gl~~~L~~ll~D-~~p~VVAnAlaaL~eI~e~~~~-~~~~~l~~~~~~~lL~al~ec~E---W~qi~IL~~l~~y~p 231 (734)
T KOG1061|consen 157 EDSGLVDALKDLLSD-SNPMVVANALAALSEIHESHPS-VNLLELNPQLINKLLEALNECTE---WGQIFILDCLAEYVP 231 (734)
T ss_pred cccchhHHHHHHhcC-CCchHHHHHHHHHHHHHHhCCC-CCcccccHHHHHHHHHHHHHhhh---hhHHHHHHHHHhcCC
Confidence 223344444455554 5778877777788888764321 222 3333444443332211 123556777777766
Q ss_pred hhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 001249 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1114)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l 255 (1114)
..- .....++..+...+.+. +..|-..+.+.+...+..+.. .....+..+-|. +...+. ..++...-++.-+
T Consensus 232 ~d~-~ea~~i~~r~~p~Lqh~-n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~p----l~tlls-~~~e~qyvaLrNi 303 (734)
T KOG1061|consen 232 KDS-REAEDICERLTPRLQHA-NSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPP----LVTLLS-SESEIQYVALRNI 303 (734)
T ss_pred CCc-hhHHHHHHHhhhhhccC-CcceEeehHHHHHHHHHHHHH-HHHHHHHHhccc----ceeeec-ccchhhHHHHhhH
Confidence 543 23667777888888886 888889999999888877632 011112222222 222222 2346666777777
Q ss_pred HHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCC
Q 001249 256 IELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIED 335 (1114)
Q Consensus 256 ~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 335 (1114)
..+....|..+......++ . .- ...--++..-++++..++.. .-+.+++..+..+-.+.+-
T Consensus 304 ~lil~~~p~~~~~~~~~Ff---~---ky-nDPiYvK~eKleil~~la~~------------~nl~qvl~El~eYatevD~ 364 (734)
T KOG1061|consen 304 NLILQKRPEILKVEIKVFF---C---KY-NDPIYVKLEKLEILIELAND------------ANLAQVLAELKEYATEVDV 364 (734)
T ss_pred HHHHHhChHHHHhHhHeee---e---ec-CCchhhHHHHHHHHHHHhhH------------hHHHHHHHHHHHhhhhhCH
Confidence 7777777776655443222 1 11 11234566666777666651 2334455555443322210
Q ss_pred CcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC-CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHH
Q 001249 336 DPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG-NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVK 414 (1114)
Q Consensus 336 ~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~ 414 (1114)
.--+.+..+++.++..+.. ...+..+++. +.-..-.+...++..+..+...++.
T Consensus 365 -----------------~fvrkaIraig~~aik~e~~~~cv~~lLel----l~~~~~yvvqE~~vvi~dilRkyP~---- 419 (734)
T KOG1061|consen 365 -----------------DFVRKAVRAIGRLAIKAEQSNDCVSILLEL----LETKVDYVVQEAIVVIRDILRKYPN---- 419 (734)
T ss_pred -----------------HHHHHHHHHhhhhhhhhhhhhhhHHHHHHH----HhhcccceeeehhHHHHhhhhcCCC----
Confidence 0112355666666655531 1233333333 3311111222333344444444432
Q ss_pred hHHHHHHHHHhcCCC-CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001249 415 NLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1114)
Q Consensus 415 ~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1114)
..+.+++.+...+.. .+|..|.+-.|.+|++++.+.+ ...++..+++.+.| ....||..-..+.-.+.-..+
T Consensus 420 ~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------a~elL~~f~en~~d-E~~~Vql~LLta~ik~Fl~~p 492 (734)
T KOG1061|consen 420 KYESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN------ALELLESFLENFKD-ETAEVQLELLTAAIKLFLKKP 492 (734)
T ss_pred chhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc------HHHHHHHHHhhccc-chHHHHHHHHHHHHHHHhcCC
Confidence 224455555555443 5788999999999999988754 45788888999999 778888777666555433322
Q ss_pred cccccCchHHHHHHHHH-Hhhc-CChhHHHHHHHHHHHHH
Q 001249 494 PEILTPYLDGIVSKLLV-LLQN-GKQMVQEGALTALASVA 531 (1114)
Q Consensus 494 ~~~l~~~l~~il~~L~~-~l~~-~~~~v~~~al~~l~~l~ 531 (1114)
++ -..++..++. +.++ .++.+|..++.-...+.
T Consensus 493 ~~-----tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 493 TE-----TQELLQGVLPLATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred cc-----HHHHHHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence 22 2334444443 3333 35688887765444433
No 110
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.97 E-value=1.2e-05 Score=60.74 Aligned_cols=55 Identities=40% Similarity=0.530 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHh
Q 001249 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (1114)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l 488 (1114)
|.||.+|+++||.+++..++.. .++.+.++|.+...|+| +++.||.+|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL-QPYLPELLPALIPLLQD-DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence 6799999999999988877777 68999999999999999 8889999999999764
No 111
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.024 Score=63.05 Aligned_cols=294 Identities=18% Similarity=0.182 Sum_probs=167.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchh-h
Q 001249 234 RTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGM-M 312 (1114)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~ 312 (1114)
+.+.....+.++.+|..|++.+..+.+. ..+. ..++....+.+ .|.+++||..|+..+...... .|.- .
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg--~kL~---~~~Y~~A~~~l--sD~~e~VR~aAvqlv~v~gn~---~p~~~e 270 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEG--FKLS---KACYSRAVKHL--SDDYEDVRKAAVQLVSVWGNR---CPAPLE 270 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhccc--cccc---HHHHHHHHHHh--cchHHHHHHHHHHHHHHHHhc---CCCccc
Confidence 3355556688999999999999888762 2221 12333334444 356789999998877766652 3210 0
Q ss_pred hc--chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC-
Q 001249 313 RK--LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP- 389 (1114)
Q Consensus 313 ~~--~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~- 389 (1114)
+. -.......+..+...+.+. ++..+..|++.++.+...- +.++ .+.+..-+-+.
T Consensus 271 ~e~~e~kl~D~aF~~vC~~v~D~-----------------sl~VRV~AaK~lG~~~~vS--ee~i---~QTLdKKlms~l 328 (823)
T KOG2259|consen 271 RESEEEKLKDAAFSSVCRAVRDR-----------------SLSVRVEAAKALGEFEQVS--EEII---QQTLDKKLMSRL 328 (823)
T ss_pred chhhhhhhHHHHHHHHHHHHhcC-----------------ceeeeehHHHHhchHHHhH--HHHH---HHHHHHHHhhhh
Confidence 11 1123333444444433322 2234444555555543221 1222 22222211111
Q ss_pred -ChhH---HHHHHHHHHHHHhh-------cHHHHHHhHHHHH-----HHHHhcCCCCChhHHHHHHHHHHHhHhhhchhH
Q 001249 390 -EWQK---HHAALIALAQIAEG-------CAKVMVKNLEQVL-----SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1114)
Q Consensus 390 -~~~~---r~aal~~l~~l~~~-------~~~~~~~~l~~i~-----~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1114)
-|+. |-..+..=|..+.| .++.....-..|+ ..++.+|.|+--.||.+|...++.++..- |
T Consensus 329 RRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P-- 405 (823)
T KOG2259|consen 329 RRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-P-- 405 (823)
T ss_pred hhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-C--
Confidence 1221 11222222211111 1111112222343 46778899999999999999999998643 2
Q ss_pred HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001249 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1114)
Q Consensus 454 ~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1114)
.+....+..|...++| ....||..|..+|..+..+.. .-+..++.++..+.+.+..+|+..-..++..--.
T Consensus 406 --~FA~~aldfLvDMfND-E~~~VRL~ai~aL~~Is~~l~------i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~ 476 (823)
T KOG2259|consen 406 --GFAVRALDFLVDMFND-EIEVVRLKAIFALTMISVHLA------IREEQLRQILESLEDRSVDVREALRELLKNARVS 476 (823)
T ss_pred --CcHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHhe------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 4567788889999999 888999999999999987743 2345567777888899999998877766543211
Q ss_pred hhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhc
Q 001249 534 SQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1114)
Q Consensus 534 ~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~ 580 (1114)
- ..-++.++..|...+.....+ |-..+.|++.|++.-+
T Consensus 477 d----~~~i~m~v~~lL~~L~kyPqD-----rd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 477 D----LECIDMCVAHLLKNLGKYPQD-----RDEILRCMGRIGQNHR 514 (823)
T ss_pred c----HHHHHHHHHHHHHHhhhCCCC-----cHHHHHHHHHHhccCh
Confidence 1 123444555555555542111 3346889999987655
No 112
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.092 Score=61.45 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=102.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001249 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1114)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~ 99 (1114)
.=+..++.++.+.|.+.++--.-+|..+.+.+|+..+...=.+..+ +.++.+|.+|...+..+=. .+
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~-----------~e 123 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV-----------KE 123 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh-----------HH
Confidence 3455677888888999999999999999988887643333333333 8899999999877765311 34
Q ss_pred HHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchh--hHHHHHHhhcCCChhhHHHHHHHHHHhhhh
Q 001249 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE--LLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (1114)
Q Consensus 100 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~--ll~~l~~~~~~~~~~~r~~al~~l~~l~~~ 173 (1114)
....+-..+.+.+.+ +++-||+.++.++..+.+.+ .+-.++ +...+..++.++++.+...|+..|..+...
T Consensus 124 l~~~~~~~ik~~l~d-~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 124 LLGNIIDPIKKLLTD-PHAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHccC-CcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 455666667777776 79999999999999998742 233343 456666777889999999999999988876
No 113
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0069 Score=65.07 Aligned_cols=263 Identities=18% Similarity=0.198 Sum_probs=154.4
Q ss_pred hhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchH
Q 001249 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1114)
Q Consensus 143 ~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1114)
+++..+.+-..+++...|..|+..|+......++....|...++..+..+|-|+.+.+|...+++++..+.+...+.
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~--- 334 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND--- 334 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc---
Confidence 34444444456788899999999999999998888888999999999999988778899999999999888875321
Q ss_pred hHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchH----HHHHHHH-HHHHHHHHHhccCCcchhHHHHHHHH
Q 001249 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR----FLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEF 297 (1114)
Q Consensus 223 ~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~ 297 (1114)
+ +...+-.+--.+.+...+.+++.|..++..++.++...+. +|...+. .+.++++.+ . +....+ ..|+..
T Consensus 335 ~-l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl-~--d~~p~v-a~ACr~ 409 (533)
T KOG2032|consen 335 D-LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL-Q--DPNPYV-ARACRS 409 (533)
T ss_pred c-hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee-C--CCChHH-HHHHHH
Confidence 1 1111112222345556678899999999999988765532 3333222 344444433 2 223332 234444
Q ss_pred HHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHH
Q 001249 298 VITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPV 377 (1114)
Q Consensus 298 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 377 (1114)
....+- |... .+.+..+++...+. + .. -........+..+ ..+.|.
T Consensus 410 ~~~~c~-----p~l~-------rke~~~~~q~~ld~-----------------~-~~--~~q~Fyn~~c~~L--~~i~~d 455 (533)
T KOG2032|consen 410 ELRTCY-----PNLV-------RKELYHLFQESLDT-----------------D-MA--RFQAFYNQWCIQL--NHIHPD 455 (533)
T ss_pred HHHhcC-----chhH-------HHHHHHHHhhhhHH-----------------h-HH--HHHHHHHHHHHHH--hhhCHH
Confidence 444332 2211 11122222111000 0 00 0111111211112 122333
Q ss_pred HHHHHHH---hhCCCCh-hHHHHHHHHHHHHHhhcHHHHHHh--HHHHHHHHHhcCCCCChhHHHHHHHHHHHhHh
Q 001249 378 ASEQLPA---YLAAPEW-QKHHAALIALAQIAEGCAKVMVKN--LEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1114)
Q Consensus 378 l~~~l~~---~l~~~~~-~~r~aal~~l~~l~~~~~~~~~~~--l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1114)
++-++.. .+-+..| .+|.++...-+.+........-.+ ...+...+-.+..|+-|.++..|..+++.+..
T Consensus 456 ~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 456 ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 3332222 2224567 788888887777766554433332 34566777788899999999999999988754
No 114
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.075 Score=60.26 Aligned_cols=432 Identities=17% Similarity=0.193 Sum_probs=207.5
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHH-HhhhcCchHHHHHHHHHHcc---CCCHHHHHHHHHHHHHhcccCCCCcccCC
Q 001249 21 SAPFETLISHLMSTSNEQRSEAELLFN-LCKQQDPDSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLWPRL 96 (1114)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~Ae~~L~-~~~~~~p~~~~~~L~~il~~---~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l 96 (1114)
..++.+-| -++|.+.+-.|.+.+- .+.+ -+.+...+..|+.- +.+-+++++--.++. ++.+...+ .++
T Consensus 22 ~~~ik~~L---ek~~~~~KIeamK~ii~~mln--Ge~~p~Llm~IiRfvlps~~~elKKLly~ywE-~vPKt~~d--gkl 93 (948)
T KOG1058|consen 22 EDEIKEKL---EKGDDEVKIEAMKKIIALMLN--GEDLPSLLMTIIRFVLPSRNHELKKLLYYYWE-LVPKTDSD--GKL 93 (948)
T ss_pred hHHHHHHH---hcCChHHHHHHHHHHHHHHHc--CCCchHHHHHHhheeeccCchHHHHHHHHHHH-HccccCCC--ccc
Confidence 34454444 4667777777766543 3443 33344445555542 555555543332222 12111000 001
Q ss_pred CHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhh
Q 001249 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1114)
Q Consensus 97 ~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~ 176 (1114)
-+|- -.+-+.+-+-|.. |+.-||-..-+.+.++= ...-...++|.+.+++.+..+-+|..|..++..|...+ +
T Consensus 94 ~~EM-ILvcna~RkDLQH-PNEyiRG~TLRFLckLk----E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~-~ 166 (948)
T KOG1058|consen 94 LHEM-ILVCNAYRKDLQH-PNEYIRGSTLRFLCKLK----EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF-E 166 (948)
T ss_pred HHHH-HHHHHHHhhhccC-chHhhcchhhhhhhhcC----cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh-h
Confidence 1110 0112222223333 56666665444443321 11234556777778888888888888887777777653 3
Q ss_pred hhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001249 177 TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (1114)
Q Consensus 177 ~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~ 256 (1114)
.+-+..++++..++. ++ .++..+..|+-.|..+-. +.- +..+...+.+ +.+-++......++.+.
T Consensus 167 ~L~pDapeLi~~fL~--~e-~DpsCkRNAFi~L~~~D~--------ErA---l~Yl~~~idq-i~~~~~~LqlViVE~Ir 231 (948)
T KOG1058|consen 167 HLIPDAPELIESFLL--TE-QDPSCKRNAFLMLFTTDP--------ERA---LNYLLSNIDQ-IPSFNDSLQLVIVELIR 231 (948)
T ss_pred hhcCChHHHHHHHHH--hc-cCchhHHHHHHHHHhcCH--------HHH---HHHHHhhHhh-ccCccHHHHHHHHHHHH
Confidence 344445555554442 22 244555554433321110 000 0011111100 11112222223333333
Q ss_pred HHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCC
Q 001249 257 ELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD 336 (1114)
Q Consensus 257 ~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 336 (1114)
..+...|..-..++.-++.++. ..++.++..|...+.++.. . +..+......++.++.+..|.
T Consensus 232 kv~~~~p~~~~~~i~~i~~lL~------stssaV~fEaa~tlv~lS~----~-------p~alk~Aa~~~i~l~~kesdn 294 (948)
T KOG1058|consen 232 KVCLANPAEKARYIRCIYNLLS------STSSAVIFEAAGTLVTLSN----D-------PTALKAAASTYIDLLVKESDN 294 (948)
T ss_pred HHHhcCHHHhhHHHHHHHHHHh------cCCchhhhhhcceEEEccC----C-------HHHHHHHHHHHHHHHHhccCc
Confidence 3333333333333333333222 1234444443333222222 1 223333333333333222111
Q ss_pred cccccCCCCCccccCCCchhhHHHHHHHHHHHc-CCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHh
Q 001249 337 PLWHSAETEDEDAGESSNYSVGQECLDRLAIAL-GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN 415 (1114)
Q Consensus 337 ~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~ 415 (1114)
. +-.-.++++...- +.+.++.-+.--+...+++++..+|.-++...-.+++. ..
T Consensus 295 ----------------n---vklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss------rN 349 (948)
T KOG1058|consen 295 ----------------N---VKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS------RN 349 (948)
T ss_pred ----------------c---hhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh------cc
Confidence 1 1122344444322 11344544444455678899999998888776666654 23
Q ss_pred HHHHHHHHHhcC-------CCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHh
Q 001249 416 LEQVLSMVLNSF-------RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (1114)
Q Consensus 416 l~~i~~~l~~~l-------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l 488 (1114)
+.+++.++-+.+ +|.+..-|..-..++...+-.++ .+...+++.+++.+.| .++........++...
T Consensus 350 vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-----~~aatvV~~ll~fisD-~N~~aas~vl~FvrE~ 423 (948)
T KOG1058|consen 350 VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-----EVAATVVSLLLDFISD-SNEAAASDVLMFVREA 423 (948)
T ss_pred HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh-----HHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHH
Confidence 444554444433 34556678888888888776654 5678999999999999 7776666666666666
Q ss_pred hhcCCcccccCchHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHhhh
Q 001249 489 SENCTPEILTPYLDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 489 ~~~~~~~~l~~~l~~il~~L~~~l~~-~~~~v~~~al~~l~~l~~~~~ 535 (1114)
++.++. .-..++..|+..+.. .+..+-+.+++.+|..+....
T Consensus 424 iek~p~-----Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 424 IEKFPN-----LRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHhCch-----HHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 665542 123445555554432 234556677777777665443
No 115
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.02 Score=64.62 Aligned_cols=348 Identities=13% Similarity=0.174 Sum_probs=187.9
Q ss_pred CCchhhHHHHHHhhc-CCChhhHHHHHHHHHHhh-hhhh-hhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001249 139 NGWPELLPFMFQCVS-SDSVKLQESAFLIFAQLS-QYIG-DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1114)
Q Consensus 139 ~~w~~ll~~l~~~~~-~~~~~~r~~al~~l~~l~-~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1114)
...|.++-.+++..- +.+...+. -++.+-.++ +..+ ..+.+.+--+...+.+-|+++ +.-+|-..++.+..+=
T Consensus 52 e~~p~Llm~IiRfvlps~~~elKK-Lly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHP-NEyiRG~TLRFLckLk-- 127 (948)
T KOG1058|consen 52 EDLPSLLMTIIRFVLPSRNHELKK-LLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHP-NEYIRGSTLRFLCKLK-- 127 (948)
T ss_pred CCchHHHHHHhheeeccCchHHHH-HHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCc-hHhhcchhhhhhhhcC--
Confidence 467777777776543 33444443 333333343 3332 223444555667777788997 8889988887765443
Q ss_pred cCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHH
Q 001249 216 LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAI 295 (1114)
Q Consensus 216 ~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~ 295 (1114)
++ +++..++..+.++++.+..-+|..|+-++..+-.. ..++-|-.++++.-++. .+.|...+..|+
T Consensus 128 -----E~----ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~----~e~DpsCkRNAF 193 (948)
T KOG1058|consen 128 -----EP----ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLL----TEQDPSCKRNAF 193 (948)
T ss_pred -----cH----HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHH----hccCchhHHHHH
Confidence 22 34445666777788899999999998888777554 34555666677665543 234677777776
Q ss_pred HHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcch
Q 001249 296 EFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIV 375 (1114)
Q Consensus 296 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~ 375 (1114)
-.+..+-.. ..+..+..+...+ +.|+. ....+-.+.+...+..-+ .--
T Consensus 194 i~L~~~D~E----------------rAl~Yl~~~idqi---~~~~~-----------~LqlViVE~Irkv~~~~p--~~~ 241 (948)
T KOG1058|consen 194 LMLFTTDPE----------------RALNYLLSNIDQI---PSFND-----------SLQLVIVELIRKVCLANP--AEK 241 (948)
T ss_pred HHHHhcCHH----------------HHHHHHHhhHhhc---cCccH-----------HHHHHHHHHHHHHHhcCH--HHh
Confidence 555443321 1111111111100 11110 001111122222221111 111
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHh
Q 001249 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1114)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1114)
...+..+..++++.+..+++-|...+-.++.. +..++.-...++..+.+. ++-+++-..+.-|..+.... .
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~Aa~~~i~l~~ke---sdnnvklIvldrl~~l~~~~-----~ 312 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKAAASTYIDLLVKE---SDNNVKLIVLDRLSELKALH-----E 312 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHHHHHHHHHHHHhc---cCcchhhhhHHHHHHHhhhh-----H
Confidence 22334444555666666666555444444322 222333333334433322 23334444444444443111 3
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhc-------CChhHHHHHHHHHH
Q 001249 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN-------GKQMVQEGALTALA 528 (1114)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~-------~~~~v~~~al~~l~ 528 (1114)
..+..++-.++..|.. ++-+||..+....-.++.... +.+++..|.+-+.. .+...|...+.++.
T Consensus 313 ~il~~l~mDvLrvLss-~dldvr~Ktldi~ldLvssrN-------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih 384 (948)
T KOG1058|consen 313 KILQGLIMDVLRVLSS-PDLDVRSKTLDIALDLVSSRN-------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIH 384 (948)
T ss_pred HHHHHHHHHHHHHcCc-ccccHHHHHHHHHHhhhhhcc-------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHH
Confidence 4566667777788888 899999999887766665543 34455555443322 24566777888887
Q ss_pred HHHHhhhhhhhhhHhhhhHHHHHHHhhcc
Q 001249 529 SVADSSQEHFQKYYDAVMPFLKAILVNAT 557 (1114)
Q Consensus 529 ~l~~~~~~~~~~~~~~i~~~L~~~l~~~~ 557 (1114)
+.+-. |..+...+++.+++.+.+.+
T Consensus 385 ~cav~----Fp~~aatvV~~ll~fisD~N 409 (948)
T KOG1058|consen 385 ACAVK----FPEVAATVVSLLLDFISDSN 409 (948)
T ss_pred HHhhc----ChHHHHHHHHHHHHHhccCC
Confidence 77654 44577889999999887643
No 116
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.86 E-value=0.048 Score=61.04 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=109.0
Q ss_pred CCChhHHHHHHHHHHHHHhhcHHHHHH-hHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHH
Q 001249 388 APEWQKHHAALIALAQIAEGCAKVMVK-NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 466 (1114)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~~~~~~-~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~ 466 (1114)
..+...+.||+.++..++......-.. .-..++..+++.+.||...|..++.-++..+.-.+++.-..-.-...+..+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 346778889999998887654421111 1235667777778999999999999999999888776442223457888889
Q ss_pred hhccCCCChhHHHHHHHHHHHhhhcCCccc-ccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001249 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEI-LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1114)
Q Consensus 467 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~ 536 (1114)
+.+.+ +.+.+|..+.++|..+.=++.... ..++-.--...+..+.+++++.|+++++..+..+.....+
T Consensus 468 s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 468 SMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence 99998 889999999999999876665432 2333334456666778899999999999999988755443
No 117
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.84 E-value=0.00041 Score=66.38 Aligned_cols=138 Identities=22% Similarity=0.289 Sum_probs=115.5
Q ss_pred HhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001249 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1114)
Q Consensus 414 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1114)
..+..++..+.+.++++++.-|+.++..++..++..+.+....+....+..+++.++....+.+...++.++..++....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 46677888889999999999999999999999999866665678889999999999884566788999999999987543
Q ss_pred ------cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHH
Q 001249 494 ------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 553 (1114)
Q Consensus 494 ------~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l 553 (1114)
.+...|.++.+++.+++.+++ ......++.++..+....+..|.||...+-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 255679999999999998886 5667889999999999999899999888777666543
No 118
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.81 E-value=0.15 Score=60.30 Aligned_cols=377 Identities=17% Similarity=0.237 Sum_probs=201.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHH
Q 001249 161 ESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL 240 (1114)
Q Consensus 161 ~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~ 240 (1114)
..++.+|..++++......-.-..+++.+.++|..+ +.++...++.++..+.-+-++ ...... ..++..+...+
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~EN---K~~m~~--~giV~kL~kLl 340 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKEN---KDEMAE--SGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHH---HHHHHH--cCCHHHHHHHh
Confidence 367788888888765544444567888899999886 889999898888887754322 111111 12344445555
Q ss_pred hCCCHHHHHHHHHHHHHHHccchHHHHHHHH--HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhh
Q 001249 241 NNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQF 318 (1114)
Q Consensus 241 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 318 (1114)
.+++.+.+..++.+|..+... ...++.+- .+++.+..++.+ +..+..++.++..++...+.. .++. +
T Consensus 341 ~s~~~~l~~~aLrlL~NLSfd--~~~R~~mV~~GlIPkLv~LL~d----~~~~~val~iLy~LS~dd~~r-~~f~----~ 409 (708)
T PF05804_consen 341 PSENEDLVNVALRLLFNLSFD--PELRSQMVSLGLIPKLVELLKD----PNFREVALKILYNLSMDDEAR-SMFA----Y 409 (708)
T ss_pred cCCCHHHHHHHHHHHHHhCcC--HHHHHHHHHCCCcHHHHHHhCC----CchHHHHHHHHHHhccCHhhH-HHHh----h
Confidence 677888999999999888643 33344433 366666666642 456677888888887642211 1111 1
Q ss_pred HHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHH------HcCCCcchHHHHHHHHHhhCCCChh
Q 001249 319 INRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI------ALGGNTIVPVASEQLPAYLAAPEWQ 392 (1114)
Q Consensus 319 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~------~~~~~~~~~~l~~~l~~~l~~~~~~ 392 (1114)
...+|.+++.+....+.. . ... ....+-.++. .+-....++.++.. .++..++
T Consensus 410 -TdcIp~L~~~Ll~~~~~~--------------v-~~e-liaL~iNLa~~~rnaqlm~~g~gL~~L~~r---a~~~~D~- 468 (708)
T PF05804_consen 410 -TDCIPQLMQMLLENSEEE--------------V-QLE-LIALLINLALNKRNAQLMCEGNGLQSLMKR---ALKTRDP- 468 (708)
T ss_pred -cchHHHHHHHHHhCCCcc--------------c-cHH-HHHHHHHHhcCHHHHHHHHhcCcHHHHHHH---HHhcccH-
Confidence 235666666654432110 0 000 1111111111 00001223444332 3333322
Q ss_pred HHHHHHHHHHHHHhhcHH---HHHHhHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHhHhhhch--hHHhhhh--hhhHHH
Q 001249 393 KHHAALIALAQIAEGCAK---VMVKNLEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGP--DLQNQFH--PQVLPA 464 (1114)
Q Consensus 393 ~r~aal~~l~~l~~~~~~---~~~~~l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~--~~~~~~~--~~il~~ 464 (1114)
..+..+..++..-+. .+.+++.+++.. +... +. ...+.|+|.++.-.-+ .+ ...+ ..++|.
T Consensus 469 ---lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~----v~~~~~e---e~~vE~LGiLaNL~~~~ld~-~~ll~~~~llp~ 537 (708)
T PF05804_consen 469 ---LLLKLIRNISQHDGPLKELFVDFIGDLAKI----VSSGDSE---EFVVECLGILANLTIPDLDW-AQLLQEYNLLPW 537 (708)
T ss_pred ---HHHHHHHHHHhcCchHHHHHHHHHHHHHHH----hhcCCcH---HHHHHHHHHHHhcccCCcCH-HHHHHhCCHHHH
Confidence 233466666665422 233444444443 3332 33 4455666666543322 22 2233 368888
Q ss_pred HHhhccCC-CChhHHHHHHHHHHHhhhcCCcccccCch--HHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHhhhh--h
Q 001249 465 LAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQE--H 537 (1114)
Q Consensus 465 l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~~~l~~~l--~~il~~L~~~l~~~--~~~v~~~al~~l~~l~~~~~~--~ 537 (1114)
+.+.|... ....+...++..++.++..-. ..+.+ ..+++.|..+++.. +.++--+.+.++..+...-.. .
T Consensus 538 L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~---~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ 614 (708)
T PF05804_consen 538 LKDLLKPGASEDDLLLEVVILLGTLASDPE---CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREV 614 (708)
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHHCCHH---HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHH
Confidence 88888652 234677788888887764321 12222 25677777777654 355556677777777655221 1
Q ss_pred hhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHH-------hchhhhhhhHHHHHHH
Q 001249 538 FQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA-------VGKDKFRDDAKQVMEV 594 (1114)
Q Consensus 538 ~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~-------~~~~~f~~~~~~i~~~ 594 (1114)
+.. -..+...+...+... ...+|..+=.|+..++.. +..++|.-|-.+.++.
T Consensus 615 ll~-~~~~~~ylidL~~d~----N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~ 673 (708)
T PF05804_consen 615 LLK-ETEIPAYLIDLMHDK----NAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEM 673 (708)
T ss_pred HHh-ccchHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHH
Confidence 111 134666777766442 345666666666666532 2234455554444443
No 119
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.80 E-value=0.14 Score=59.79 Aligned_cols=136 Identities=13% Similarity=0.181 Sum_probs=106.3
Q ss_pred hhHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcC-CCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHH
Q 001249 920 YYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGG-SVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKIC 998 (1114)
Q Consensus 920 ~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~-~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~ 998 (1114)
++..++|.+.+.+......+|.+-..+|..+..+.| +.+.|.++.++|.|.+.+.-++ ..+|-.+..++-.++
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D------~~v~vstl~~i~~~l 937 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPD------VIVRVSTLRTIPMLL 937 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCc------cchhhhHhhhhhHHH
Confidence 788899999999998888999999999999999887 5688999999999999998774 456666778887777
Q ss_pred hhcCCCC--CHhhHHHHHHhcCCCCCc---HHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhc
Q 001249 999 QFHRDSI--DAAQVVPAWLNCLPIKGD---LIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILC 1065 (1114)
Q Consensus 999 ~~~~~~~--~~~~~~~~~l~~Lp~~~d---~~e~~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~~~~l~ 1065 (1114)
...+... |++.++|.+|+. +...| ...+..+.++|..|.+.-+...+-+ +-|++++.+...|.
T Consensus 938 ~~~~tL~t~~~~Tlvp~lLsl-s~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~---fr~~Vl~al~k~Ld 1005 (1030)
T KOG1967|consen 938 TESETLQTEHLSTLVPYLLSL-SSDNDNNMMVVREDALQCLNALTRRLPTKSLLS---FRPLVLRALIKILD 1005 (1030)
T ss_pred HhccccchHHHhHHHHHHHhc-CCCCCcchhHHHHHHHHHHHHHhccCCCccccc---ccHHHHHHhhhccC
Confidence 7766655 789999998874 22223 3456778889888886444443333 68899999988885
No 120
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.79 E-value=0.00083 Score=65.61 Aligned_cols=111 Identities=22% Similarity=0.324 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhc
Q 001249 390 EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1114)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1114)
++.+|-.++.++|.++...+. .++..++.+...|+|++|.||..|+.++..+... ++ .+.-..++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~-ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DM-IKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---Cc-eeehhhhhHHHHHHH
Confidence 467899999999999877654 4556677888899999999999999999998743 22 245567778888899
Q ss_pred cCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHH
Q 001249 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLL 509 (1114)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~ 509 (1114)
.| +++.||..|..++..+.....++.+..+++.++..+-
T Consensus 73 ~D-~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 73 VD-ENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99 9999999999999999887555545444444444333
No 121
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.78 E-value=0.00011 Score=62.42 Aligned_cols=86 Identities=28% Similarity=0.403 Sum_probs=67.2
Q ss_pred HHHHHhh-CCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhh
Q 001249 380 EQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1114)
Q Consensus 380 ~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1114)
+.+.+.+ ++++|.+|..++.+++.+. -+..++.+...++|+++.||..|+++|+.+. .
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------~ 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG-----------D 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------C
Confidence 3444555 7899999999999999442 1366888888889999999999999999873 1
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHH
Q 001249 459 PQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1114)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1114)
+..++.+.+.+.+.++..||..|..+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4577888888877456678999988874
No 122
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00058 Score=68.60 Aligned_cols=147 Identities=18% Similarity=0.276 Sum_probs=122.5
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh
Q 001249 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1114)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1114)
......+.+.+|....-++..+..+++..++.+.+.+..++-.+.+.++++...|-.+|+.+++.+.+.+...+ ...++
T Consensus 91 ~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-~~~ld 169 (334)
T KOG2933|consen 91 KQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-DQELD 169 (334)
T ss_pred HHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 33344567899999999999999999999999999999999999999999999999999999999999998877 34677
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
.++..|+..-.. .+.-||+.|-.+|..++....+. .+++.|...+++.++.+|..+..++.......+
T Consensus 170 ~lv~~Ll~ka~~-dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 170 DLVTQLLHKASQ-DNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHhhhcc-cchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 777777665555 57889999999999999887653 356777777888999999888877777665554
No 123
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.74 E-value=0.016 Score=60.02 Aligned_cols=246 Identities=13% Similarity=0.189 Sum_probs=161.0
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhhhhhhh-hh-hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHH
Q 001249 148 MFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF 225 (1114)
Q Consensus 148 l~~~~~~~~~~~r~~al~~l~~l~~~~~~~-~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 225 (1114)
|-..+.++++..|..|+.+|..+.+.++.. +. ..+..++..+..-+.|. ..+ ..+++++..++.. .. ...+
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~--~~~-~~~l~gl~~L~~~-~~-~~~~-- 76 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH--ACV-QPALKGLLALVKM-KN-FSPE-- 76 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH--hhH-HHHHHHHHHHHhC-cC-CChh--
Confidence 455678899999999999999999998754 32 35677888888888553 333 4448888888743 21 1112
Q ss_pred HhhHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHH
Q 001249 226 QDLLPLMMRTLTESL--NNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1114)
Q Consensus 226 ~~l~p~ll~~l~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1114)
....+++.+++.. +..-...|..+++++..+.+.+...+...-..++..+++.+.. +-|+..-..+++++..+..
T Consensus 77 --~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g-EkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 77 --SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG-EKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred --hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Confidence 2334555555422 2334578999999999999988777766667778877777653 3466666778888888877
Q ss_pred hhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhh-HHHHHHHHHHHcC-CCcchHHHHHH
Q 001249 304 ARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV-GQECLDRLAIALG-GNTIVPVASEQ 381 (1114)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~-a~~~l~~l~~~~~-~~~~~~~l~~~ 381 (1114)
. .+ ..++.+.++..+..+.--.- .....| ++.+ ..+.-..|-..+. ...+.|..+|+
T Consensus 154 ~---~~-----~~~~~e~lFd~~~cYFPI~F-----~pp~~d--------p~~IT~edLk~~L~~cl~s~~~fa~~~~p~ 212 (262)
T PF14500_consen 154 E---FD-----ISEFAEDLFDVFSCYFPITF-----RPPPND--------PYGITREDLKRALRNCLSSTPLFAPFAFPL 212 (262)
T ss_pred h---cc-----cchhHHHHHHHhhheeeeee-----eCCCCC--------CCCCCHHHHHHHHHHHhcCcHhhHHHHHHH
Confidence 3 22 24667777777665532110 000000 1111 1222223333332 24677889999
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHH
Q 001249 382 LPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVL 424 (1114)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~ 424 (1114)
+.+-+.++...+|.-++..+...++..+ +.+.+|...++..+-
T Consensus 213 LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 213 LLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 9999999998999999999988877554 467778888777654
No 124
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.69 E-value=0.025 Score=66.48 Aligned_cols=376 Identities=15% Similarity=0.164 Sum_probs=202.0
Q ss_pred hhhhHHHHHHHHHHHHHhcccCCC--CchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhh
Q 001249 116 SAKSISKKLCDTVSELASNILPEN--GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL 193 (1114)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~--~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 193 (1114)
.+..+| .+..++..++....... .-.++++.|..++.+.+......++.+|..+.-.....-.-.-..+++.+.+.+
T Consensus 262 QeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 262 QEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 344444 44566777765321100 225788999999998888888888888887764322111111235677777888
Q ss_pred cCCCChHHHHHHHHHHHHHHHhcCCcchHhHH--HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch-HHHHHHH
Q 001249 194 TNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-RFLRRQL 270 (1114)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~ 270 (1114)
..+ +..++..++++|.++...-. ....+ .+++|.++..+ . ++..+..++.+|..++.... +.+-.+.
T Consensus 341 ~s~-~~~l~~~aLrlL~NLSfd~~---~R~~mV~~GlIPkLv~LL----~--d~~~~~val~iLy~LS~dd~~r~~f~~T 410 (708)
T PF05804_consen 341 PSE-NEDLVNVALRLLFNLSFDPE---LRSQMVSLGLIPKLVELL----K--DPNFREVALKILYNLSMDDEARSMFAYT 410 (708)
T ss_pred cCC-CHHHHHHHHHHHHHhCcCHH---HHHHHHHCCCcHHHHHHh----C--CCchHHHHHHHHHHhccCHhhHHHHhhc
Confidence 876 88899999999988764321 12222 24666666554 3 34455667777777665321 1111111
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcccc
Q 001249 271 VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAG 350 (1114)
Q Consensus 271 ~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~ 350 (1114)
+.++.+.+.+... .++.+...++.++..++....+...+++. + -++.++.......|
T Consensus 411 -dcIp~L~~~Ll~~-~~~~v~~eliaL~iNLa~~~rnaqlm~~g--~----gL~~L~~ra~~~~D--------------- 467 (708)
T PF05804_consen 411 -DCIPQLMQMLLEN-SEEEVQLELIALLINLALNKRNAQLMCEG--N----GLQSLMKRALKTRD--------------- 467 (708)
T ss_pred -chHHHHHHHHHhC-CCccccHHHHHHHHHHhcCHHHHHHHHhc--C----cHHHHHHHHHhccc---------------
Confidence 2344444433221 23444555566666666643322222211 1 22333322111110
Q ss_pred CCCchhhHHHHHHHHHHHcCC-C-cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhc-HH-HHHHhHH--HHHHHHH
Q 001249 351 ESSNYSVGQECLDRLAIALGG-N-TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC-AK-VMVKNLE--QVLSMVL 424 (1114)
Q Consensus 351 ~~~~~~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-~~-~~~~~l~--~i~~~l~ 424 (1114)
....+++..++.+-|+ + .+.+.+.+++.. +.+.+ .-+..+.++|.++.-. ++ .....+. .++|.+.
T Consensus 468 -----~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~-v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~ 539 (708)
T PF05804_consen 468 -----PLLLKLIRNISQHDGPLKELFVDFIGDLAKI-VSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLK 539 (708)
T ss_pred -----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-hhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHH
Confidence 1233455555555432 1 123333333332 33322 2356666777666532 11 2223333 4667777
Q ss_pred hcCCCC--ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC-CChhHHHHHHHHHHHhhhcCCc-ccccCc
Q 001249 425 NSFRDP--HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTP-EILTPY 500 (1114)
Q Consensus 425 ~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~-~~l~~~ 500 (1114)
..|... .+.+.-.+...+|.++..-.... .-.-..+++.++..+++. .+.+.-...+.++..|+.+-.. +.+..
T Consensus 540 ~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~-lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~- 617 (708)
T PF05804_consen 540 DLLKPGASEDDLLLEVVILLGTLASDPECAP-LLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLK- 617 (708)
T ss_pred HHhCCCCCChHHHHHHHHHHHHHHCCHHHHH-HHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHh-
Confidence 666532 34566667778887774321111 112346777777777652 2345556677777777765321 11111
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 501 l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
-..+...++.++++.+..+|+.+=.++..++..-+
T Consensus 618 ~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 618 ETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred ccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 13467888999999999999998888888887644
No 125
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.69 E-value=0.058 Score=59.00 Aligned_cols=238 Identities=18% Similarity=0.205 Sum_probs=132.9
Q ss_pred hHHHHHHHHHHHHHHHHHhccC-------Ccc-----hhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhh
Q 001249 263 PRFLRRQLVDVVGSMLQIAEAE-------SLE-----EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSML 330 (1114)
Q Consensus 263 ~~~~~~~~~~l~~~ll~~~~~~-------~~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 330 (1114)
|+.|.+++..+++.+...+..+ +.+ +.++..+++.+.-.++. +. ....+|++..+....+.+
T Consensus 73 Pe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~k--Y~----e~f~~~l~~fv~~vw~lL 146 (370)
T PF08506_consen 73 PEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEK--YE----EEFEPFLPTFVQAVWNLL 146 (370)
T ss_dssp -HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHH
Confidence 7788888888887766554211 111 12455566666655553 11 124467888888887777
Q ss_pred cCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC---------CcchHH-----HHHH---------------
Q 001249 331 LDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG---------NTIVPV-----ASEQ--------------- 381 (1114)
Q Consensus 331 ~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~---------~~~~~~-----l~~~--------------- 381 (1114)
........|+ .....++.-|+...+. +..+.. ++|.
T Consensus 147 ~~~~~~~~~D---------------~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP 211 (370)
T PF08506_consen 147 TKISQQPKYD---------------ILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDP 211 (370)
T ss_dssp TC--SSGGGH---------------HHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSH
T ss_pred HHhhhccccc---------------HHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCH
Confidence 6654332211 1233344333322211 111111 2221
Q ss_pred ---HHHhhC-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhc---CCCCChhHHHHHHHHHHHhHhhhch---
Q 001249 382 ---LPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS---FRDPHPRVRWAAINAIGQLSTDLGP--- 451 (1114)
Q Consensus 382 ---l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~--- 451 (1114)
+..-+. +..-..|.||...+..+++...+...+.+...+..++.. -...+++-+.+|+..++.++.....
T Consensus 212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~ 291 (370)
T PF08506_consen 212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS 291 (370)
T ss_dssp HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT
T ss_pred HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC
Confidence 111122 223457889999999998775554444443333333321 1245788899999999999875521
Q ss_pred ---------hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHH
Q 001249 452 ---------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEG 522 (1114)
Q Consensus 452 ---------~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~ 522 (1114)
++..-+...++|.|. .-.+ ..|-++..|+..+..|-..+++ ..+..+++.+...|++++.-|+..
T Consensus 292 Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~-~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~~~~vv~ty 365 (370)
T PF08506_consen 292 GVTQTNELVDVVDFFSQHVLPELQ-PDVN-SHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQSSSYVVHTY 365 (370)
T ss_dssp B-S-B-TTS-HHHHHHHHTCHHHH--SS--S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTSS-HHHHHH
T ss_pred CcccccccccHHHHHHHHhHHHhc-ccCC-CCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCCcchhhh
Confidence 121223455667666 2223 5788999999999999888764 357889999999999999888887
Q ss_pred HHHHH
Q 001249 523 ALTAL 527 (1114)
Q Consensus 523 al~~l 527 (1114)
|..++
T Consensus 366 AA~~i 370 (370)
T PF08506_consen 366 AAIAI 370 (370)
T ss_dssp HHHHH
T ss_pred hhhhC
Confidence 76654
No 126
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.18 Score=57.73 Aligned_cols=361 Identities=15% Similarity=0.147 Sum_probs=189.0
Q ss_pred CchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCc
Q 001249 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1114)
Q Consensus 140 ~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 219 (1114)
.-.+++=.+..++++.+.-.|.....+++.+..-..+.+ -+.+.+.+-++.. +...|..|+++|..++..-
T Consensus 61 eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvi-----ivtsslmkD~t~~-~d~yr~~AiR~L~~I~d~~--- 131 (865)
T KOG1078|consen 61 EATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVI-----IVTSSLMKDMTGK-EDLYRAAAIRALCSIIDGT--- 131 (865)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhh-----hhhHHHHhhccCC-CcchhHHHHHHHHhhcCcc---
Confidence 445677777788899999888777777766654332221 1222333333333 6678899999988777531
Q ss_pred chHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHH
Q 001249 220 ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1114)
Q Consensus 220 ~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~ 299 (1114)
.++.+-+.+.+++-+..+.+...++-.=..+..............+.+. . .+.+.-+..-|+.++.
T Consensus 132 --------m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea-----~-~s~~~m~QyHalglLy 197 (865)
T KOG1078|consen 132 --------MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEA-----V-NSDNIMVQYHALGLLY 197 (865)
T ss_pred --------hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhc-----c-CcHHHHHHHHHHHHHH
Confidence 1222333444444455555544443222223333333333333332221 1 1112223445666666
Q ss_pred HHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHc-C-CCcchHH
Q 001249 300 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIAL-G-GNTIVPV 377 (1114)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~-~-~~~~~~~ 377 (1114)
.+-++.+ -.+.+++..+.. ....+ ..|...+-+.+..+ . .......
T Consensus 198 qirk~dr----------la~sklv~~~~~---~~~~~-------------------~~A~~~lir~~~~~l~~~~~~~s~ 245 (865)
T KOG1078|consen 198 QIRKNDR----------LAVSKLVQKFTR---GSLKS-------------------PLAVCMLIRIASELLKENQQADSP 245 (865)
T ss_pred HHHhhhH----------HHHHHHHHHHcc---ccccc-------------------hhHHHHHHHHHHHHhhhcccchhh
Confidence 6544210 111222222211 00000 01111222221111 0 0233456
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh
Q 001249 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1114)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 457 (1114)
+++++..++.+..-.+-.-|..++-.+....+. .+.+-+..+...+..+.+.+|.+|..+|.+++...+...
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r----~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v---- 317 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR----ELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV---- 317 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh----hcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc----
Confidence 788888888887776666666666655544333 333466777778889999999999999999987654322
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001249 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1114)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~ 537 (1114)
...-..+-..+.| .+. .-+..|+..+......+ -.+.++..+.....+-+.+.+--+..++.+++...+..
T Consensus 318 -~~cN~elE~lItd-~Nr---sIat~AITtLLKTG~e~----sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k 388 (865)
T KOG1078|consen 318 -TVCNLDLESLITD-SNR---SIATLAITTLLKTGTES----SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK 388 (865)
T ss_pred -cccchhHHhhhcc-ccc---chhHHHHHHHHHhcchh----HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH
Confidence 1112223334445 444 34455666666654432 34555666655555555555556677777777655432
Q ss_pred hhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHh
Q 001249 538 FQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV 579 (1114)
Q Consensus 538 ~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~ 579 (1114)
...++++|...|.... ....+...++++..++...
T Consensus 389 ----~~~~m~FL~~~Lr~eG---g~e~K~aivd~Ii~iie~~ 423 (865)
T KOG1078|consen 389 ----HTVMMNFLSNMLREEG---GFEFKRAIVDAIIDIIEEN 423 (865)
T ss_pred ----HHHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHHhC
Confidence 2345666666665522 2345566777777776543
No 127
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.67 E-value=0.0018 Score=63.29 Aligned_cols=135 Identities=15% Similarity=0.241 Sum_probs=98.6
Q ss_pred ChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHH
Q 001249 156 SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRT 235 (1114)
Q Consensus 156 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~ 235 (1114)
++.+|..++.+++.++...+.. ++..++.+..+|.|+ ++.||..|+.++..++..-. ..+-+.++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----ve~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~--------ik~k~~l~~~ 67 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----VEPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDM--------IKVKGQLFSR 67 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----HHhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCc--------eeehhhhhHH
Confidence 4678999999999999887764 566677888899998 99999999999999986521 1111234334
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHHHHhccC---CcchhHHHHHHHHHHHHHH
Q 001249 236 LTESLNNGNEATAQEALELLIELAGT-EPRFLRRQLVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAE 303 (1114)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~l~~~ll~~~~~~---~~~~~vr~~a~~~l~~l~~ 303 (1114)
+..++.+++++++..|..+|.++... .+..+..++++++..+-...+.+ ..+.+-|...+.++.....
T Consensus 68 ~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 68 ILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 44556789999999999999999987 67788888777776554432222 2345567777777776665
No 128
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.014 Score=67.96 Aligned_cols=95 Identities=18% Similarity=0.122 Sum_probs=76.6
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhh---cHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhH
Q 001249 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEG---CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1114)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~---~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1114)
.++.....++++++-..|..++.++.....- -.+.+-+.+...+|.++..+.+.+|.+...|+.|+.+++++.++-+
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 3444555677889999999998888754332 2245556777889999999999999999999999999999999888
Q ss_pred HhhhhhhhHHHHHhhccC
Q 001249 454 QNQFHPQVLPALAGAMDD 471 (1114)
Q Consensus 454 ~~~~~~~il~~l~~~l~~ 471 (1114)
...+...++|.+-..+.+
T Consensus 883 ~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 883 ASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888999999998776655
No 129
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0062 Score=69.74 Aligned_cols=233 Identities=15% Similarity=0.188 Sum_probs=163.4
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhh
Q 001249 462 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKY 541 (1114)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~ 541 (1114)
+...+..+.| +.+.+|..+..-|..+++.-.+.. .-....++...+..+.+.++.|--.++..+.++++..++
T Consensus 729 ~qeai~sl~d-~qvpik~~gL~~l~~l~e~r~~~~-~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----- 801 (982)
T KOG4653|consen 729 LQEAISSLHD-DQVPIKGYGLQMLRHLIEKRKKAT-LIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----- 801 (982)
T ss_pred HHHHHHHhcC-CcccchHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----
Confidence 5556666777 778889999999999998654332 234567788888899999999988999999999987554
Q ss_pred HhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHH
Q 001249 542 YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLC 621 (1114)
Q Consensus 542 ~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 621 (1114)
.++|.+.+...+.........|-++=|++..++.+.| +.+..|...+++.++.... +++...|.+.+..+|.+|
T Consensus 802 --~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G-el~~~y~~~Li~tfl~gvr---epd~~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 802 --DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG-ELVFKYKAVLINTFLSGVR---EPDHEFRASSLANLGQLC 875 (982)
T ss_pred --hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhcC---CchHHHHHhHHHHHHHHH
Confidence 4566666643332222212234445589999999999 8888888888888776433 235568999999999999
Q ss_pred HHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHH
Q 001249 622 KCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADE 701 (1114)
Q Consensus 622 ~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~ 701 (1114)
....-....++..++..++.....+.. ...|.+|++.+..+..+
T Consensus 876 q~~a~~vsd~~~ev~~~Il~l~~~d~s------------------------------------~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 876 QLLAFQVSDFFHEVLQLILSLETTDGS------------------------------------VLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHccCCc------------------------------------hhhHHHHHHHHHHHHhc
Confidence 987655555777777777766643211 23578899999999999
Q ss_pred hhhhccccH----HHHHHHhhhcccccCCHHHHHHHHHhHHHHHHH
Q 001249 702 LKEGFFPWI----DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRS 743 (1114)
Q Consensus 702 ~~~~~~p~~----~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~ 743 (1114)
++..+.|++ -.....+.........+.+|.-|+.++-.+-..
T Consensus 920 tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 920 TGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 998888854 334444555544444667777777776665544
No 130
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.62 E-value=0.078 Score=68.99 Aligned_cols=310 Identities=15% Similarity=0.172 Sum_probs=185.9
Q ss_pred Cchh----hHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhh--hhhh--hHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 001249 140 GWPE----LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD--TLTP--HLKHLHAVFLNCLTNSNNPDVKIAALNAVIN 211 (1114)
Q Consensus 140 ~w~~----ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~--~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 211 (1114)
.|+. +-+++.....+.+..++..|+..|..++..+-+ ++.. +-+.++..|...+.+..+.++|...++|+..
T Consensus 1130 ~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~q 1209 (1780)
T PLN03076 1130 VWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQ 1209 (1780)
T ss_pred ehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 5665 445555544555667777788888887765432 1211 2345667777666655588999999999999
Q ss_pred HHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHH----HHHHHHHHHHHHHhccCCcc
Q 001249 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR----RQLVDVVGSMLQIAEAESLE 287 (1114)
Q Consensus 212 l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----~~~~~l~~~ll~~~~~~~~~ 287 (1114)
++.... ..+..=|+.++.++.....+.++.....+++.+..+...+-..+. ..+..++..+...+... .+
T Consensus 1210 mI~s~~-----~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~-~~ 1283 (1780)
T PLN03076 1210 MVLSRV-----NNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR-FN 1283 (1780)
T ss_pred HHHHHH-----hhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc-Cc
Confidence 987642 234444667788877777777888889999998877764433222 45667777777666433 34
Q ss_pred hhHHHHHHHHHHHHHHhhhccchhh---------------------------hcchhhHHHHHHHHHHhhcCCCCCcccc
Q 001249 288 EGTRHLAIEFVITLAEARERAPGMM---------------------------RKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1114)
Q Consensus 288 ~~vr~~a~~~l~~l~~~~~~~~~~~---------------------------~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1114)
.++-..|++++..++..--..+... .....+..-.+|.|... .+...|
T Consensus 1284 ~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~L-s~l~~D---- 1358 (1780)
T PLN03076 1284 KDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGL-SELSFD---- 1358 (1780)
T ss_pred ccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHH-HHHhcC----
Confidence 6667778887776544210000000 00000111123333222 111100
Q ss_pred cCCCCCccccCCCchhhHHHHHHHHHHHcCCCcch---------HHHHHHHHHhh---C--------------C------
Q 001249 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIV---------PVASEQLPAYL---A--------------A------ 388 (1114)
Q Consensus 341 ~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~---------~~l~~~l~~~l---~--------------~------ 388 (1114)
+....++.|.++|-.+-..+|. .+- ..++|.+...- . +
T Consensus 1359 ---------~RlEVR~~ALqtLF~iL~~yG~-~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076 1359 ---------PRPEIRKSALQVLFDTLRNHGH-LFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred ---------CcHHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence 0112455566665554455552 221 13445443321 0 0
Q ss_pred CChhHHHHHHHHHHHHHhhcHH---HHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHH
Q 001249 389 PEWQKHHAALIALAQIAEGCAK---VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPAL 465 (1114)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~---~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l 465 (1114)
..|. .+....+|..+++-... .+...++.++..+..++..+|..+-..+..||.++....+..+....+..++..+
T Consensus 1429 ~~Wl-~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~ 1507 (1780)
T PLN03076 1429 DAWL-YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSL 1507 (1780)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 1243 56666777766665443 4445677888888888899999999999999999999888888777788888877
Q ss_pred HhhccC
Q 001249 466 AGAMDD 471 (1114)
Q Consensus 466 ~~~l~~ 471 (1114)
.+.+..
T Consensus 1508 ~~lf~~ 1513 (1780)
T PLN03076 1508 KEAANA 1513 (1780)
T ss_pred HHHHHH
Confidence 777665
No 131
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.62 E-value=0.00098 Score=62.90 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=92.1
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHH---HHhh
Q 001249 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV---ADSS 534 (1114)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l---~~~~ 534 (1114)
++.++|.++..+.. ....-+--|...+..+++..+.+.+.|.++.++..+..++++.++.+...++.++..+ ...+
T Consensus 36 y~~~Lpif~dGL~E-t~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 36 YHHYLPIFFDGLRE-TEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hhhHHHHHHhhhhc-cCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 56899999999988 4444556777778888887444557899999999999999999999999999999999 7778
Q ss_pred hhhhhhhHhhhhHHHHHHHhhccC-------ccchhhhHHHHHHHHHHHHHhchh
Q 001249 535 QEHFQKYYDAVMPFLKAILVNATD-------KSNRMLRAKSMECISLVGMAVGKD 582 (1114)
Q Consensus 535 ~~~~~~~~~~i~~~L~~~l~~~~~-------~~~~~lr~~a~~~l~~i~~~~~~~ 582 (1114)
|+.+.||+.+++|.+.-..+...+ .....++.-.-+++..+-+.-|++
T Consensus 115 G~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 999999999999998755443210 111233444445555555555543
No 132
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.19 Score=56.13 Aligned_cols=147 Identities=22% Similarity=0.248 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHc-CCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001249 21 SAPFETLISHLM-STSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1114)
Q Consensus 21 ~~~l~~ll~~~~-s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~ 99 (1114)
..+++.+-+.++ |.|...|.+||+.|.++.+ +|+ ++...--++..+..+--..+|+..|-+.+..+ ..++-+
T Consensus 4 LaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~-spe-clskCqlll~~gs~pYs~mlAst~L~Klvs~~-----t~lpl~ 76 (1082)
T KOG1410|consen 4 LAQLESLCKDLYESTDPTARHRAEKALAELSE-SPE-CLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-----TPLPLE 76 (1082)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-----CCCcHH
Confidence 357777777775 6799999999999999998 787 45666666767777888899999999999885 368999
Q ss_pred HHHHHHHHHHHHHhhc-h--hhhHHHHHHHHHHHHHhcccCCC-----CchhhHHHHHHhhcCCChhhHHHHHHHHHHhh
Q 001249 100 TQSSLKSMLLQSIQLE-S--AKSISKKLCDTVSELASNILPEN-----GWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1114)
Q Consensus 100 ~~~~i~~~ll~~l~~e-~--~~~vr~~~~~~i~~ia~~~~~~~-----~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~ 171 (1114)
++-.|++-+++.+..- | .+-+-..+++.++.+.+..|-.. .+.+.+..+...++..+.++.-.++.+|..+.
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 9999999999999861 1 33467778888888877544321 23466666666666666666666777777766
Q ss_pred hhh
Q 001249 172 QYI 174 (1114)
Q Consensus 172 ~~~ 174 (1114)
.++
T Consensus 157 qem 159 (1082)
T KOG1410|consen 157 QEM 159 (1082)
T ss_pred HHh
Confidence 543
No 133
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.59 E-value=0.011 Score=63.00 Aligned_cols=197 Identities=18% Similarity=0.144 Sum_probs=133.4
Q ss_pred hcCCCCChhHHHHHHHHHHHhHh-hhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc-ccccCchH
Q 001249 425 NSFRDPHPRVRWAAINAIGQLST-DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-EILTPYLD 502 (1114)
Q Consensus 425 ~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~-~~l~~~l~ 502 (1114)
..+.+.+...|.+++..+..+.. ...+++.......++..+.+.++. +..+-+..|+.++.-++-.++. ......+.
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkk-g~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~ 128 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKK-GKSEEQALAARALALLALTLGAGEDSEEIFE 128 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Confidence 34567778899999988877653 334445467788899999999988 5556667777888777766541 22345677
Q ss_pred HHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhhhhhhhhhHh--hhhHHHHH--HHhhccC------ccchhhhHHHHH
Q 001249 503 GIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYD--AVMPFLKA--ILVNATD------KSNRMLRAKSME 570 (1114)
Q Consensus 503 ~il~~L~~~l~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~~--~i~~~L~~--~l~~~~~------~~~~~lr~~a~~ 570 (1114)
.+.|.|.+.+.+.. ..+|..++.+++.++...+.+...+.. ..|..+.. +...... .+...+...|+.
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 88888888888765 467778888999888766554333221 23332221 1111111 123458888999
Q ss_pred HHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhc
Q 001249 571 CISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG 625 (1114)
Q Consensus 571 ~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 625 (1114)
+++.+...++...+.......++.+..+..+ ++..+|..+-++++-+.+...
T Consensus 209 aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s---~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLLEEALPALSELLDS---DDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhh
Confidence 9999999988766777777788888776653 244588888888877766554
No 134
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.50 E-value=0.035 Score=57.44 Aligned_cols=243 Identities=16% Similarity=0.223 Sum_probs=136.7
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHH
Q 001249 189 FLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR 268 (1114)
Q Consensus 189 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 268 (1114)
+...|+++ ++.+|..|+.+|..++..++... .-..-+..+++.+...+. |......++..+..++... .+-..
T Consensus 4 Lg~~Ltse-d~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~-~~~~~ 76 (262)
T PF14500_consen 4 LGEYLTSE-DPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMK-NFSPE 76 (262)
T ss_pred hhhhhCCC-CHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCc-CCChh
Confidence 45678887 99999999999999999885311 011223345555555553 5555666677777777422 22223
Q ss_pred HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcc
Q 001249 269 QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDED 348 (1114)
Q Consensus 269 ~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed 348 (1114)
....++..+.+-...+......|..+++++..+.+.. .... + ..-...+..+++.+ +.+.|
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l-~---~~~~~fv~~~i~~~-~gEkD------------ 137 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REAL-Q---SMGDDFVYGFIQLI-DGEKD------------ 137 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHH-H---hchhHHHHHHHHHh-ccCCC------------
Confidence 3445555555444334445678999999999998841 1111 1 11123333333322 11111
Q ss_pred ccCCCchh--hHHHHHHHHHHHcCCCcchHHHHHHHHHhh--------CCCChhHHHHHHHHHHHHHhhcHHHHHHhHHH
Q 001249 349 AGESSNYS--VGQECLDRLAIALGGNTIVPVASEQLPAYL--------AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ 418 (1114)
Q Consensus 349 ~~~~~~~~--~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--------~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~ 418 (1114)
++. .+.+.+..+...+....+.+.++..+.-+. +++.--.|+.--.+|.......+ .+-+.
T Consensus 138 -----PRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~fa~~ 208 (262)
T PF14500_consen 138 -----PRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LFAPF 208 (262)
T ss_pred -----HHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hhHHH
Confidence 222 234444455544433333333333333222 12212233333333333222211 23456
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHH
Q 001249 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 466 (1114)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~ 466 (1114)
.+|.++.-|.++.+.++..++.+|...+..++.....+|+..++..+-
T Consensus 209 ~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 209 AFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999988877655677777777663
No 135
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.49 E-value=0.22 Score=57.12 Aligned_cols=317 Identities=13% Similarity=0.169 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC-ChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCC
Q 001249 120 ISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNN 198 (1114)
Q Consensus 120 vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 198 (1114)
-|-.++.-++..... ++-..-+++-.....++... ..+.|+.++..+..+++.-.......-..++..+...-.+ .+
T Consensus 6 ~R~~a~~~l~~~i~~-~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~-~d 83 (464)
T PF11864_consen 6 ERIKAAEELCESIQK-YPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND-DD 83 (464)
T ss_pred HHHHHHHHHHHHHHh-CCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc-hh
Confidence 344445555544442 23233334433344444433 4578999999999999875442211122222233222122 14
Q ss_pred hHHHHHHHHHHHHHHHhcCC--cchHhHHHhhHHHHHHHHHH---HHh-------------CCCHHHHHHHHHHHHHHHc
Q 001249 199 PDVKIAALNAVINFIQCLTS--SADRDRFQDLLPLMMRTLTE---SLN-------------NGNEATAQEALELLIELAG 260 (1114)
Q Consensus 199 ~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~l~p~ll~~l~~---~~~-------------~~~~~~~~~~~~~l~~l~~ 260 (1114)
-..|..|+.+|..=-..+.. ......+..+++...+.... ... +.+.......+..+..+++
T Consensus 84 ~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviK 163 (464)
T PF11864_consen 84 FDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIK 163 (464)
T ss_pred HHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 45677777666532222210 00111122223222211110 000 0123344556677777777
Q ss_pred cchHHHH-HHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCccc
Q 001249 261 TEPRFLR-RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 339 (1114)
Q Consensus 261 ~~~~~~~-~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 339 (1114)
.....+. ..+..++..++.++......+++ ..++.++.+++.+. .-| ...+..++..|.......+
T Consensus 164 fn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di-~~~L~vldaii~y~-~iP------~~sl~~~i~vLCsi~~~~~----- 230 (464)
T PF11864_consen 164 FNFNYLDEDEISSLVDQICTICKSTSSEDDI-EACLSVLDAIITYG-DIP------SESLSPCIEVLCSIVNSVS----- 230 (464)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHHHcC-cCC------hHHHHHHHHHHhhHhcccc-----
Confidence 6555444 45666777666666544334444 67888888888731 112 1244555555544322110
Q ss_pred ccCCCCCccccCCCchhhHHHHHHHHHH-HcCCCcchHHHHHHH--HHhhCCCChhHHHHHHHHHHHHHhhcHHHHHH--
Q 001249 340 HSAETEDEDAGESSNYSVGQECLDRLAI-ALGGNTIVPVASEQL--PAYLAAPEWQKHHAALIALAQIAEGCAKVMVK-- 414 (1114)
Q Consensus 340 ~~~~~~~ed~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~l~~~l--~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~-- 414 (1114)
..+.+-+++..|.. +.| ...+..+..++ ...-...+...-.+|+..++.+.-+.++.-.+
T Consensus 231 --------------l~~~~w~~m~nL~~S~~g-~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l 295 (464)
T PF11864_consen 231 --------------LCKPSWRTMRNLLKSHLG-HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSL 295 (464)
T ss_pred --------------cchhHHHHHHHHHcCccH-HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCccee
Confidence 11223335555542 222 33444444444 11112345777789999999887765321111
Q ss_pred hH--HHHHHHHHhcCCCCChhHHHHHHHHHHHhH-hhhchhHHhhhhhhhHHHHH
Q 001249 415 NL--EQVLSMVLNSFRDPHPRVRWAAINAIGQLS-TDLGPDLQNQFHPQVLPALA 466 (1114)
Q Consensus 415 ~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~~~~~~~~~~~~il~~l~ 466 (1114)
.+ ..+++.+...++..++.|-......+..+. ..++..+....++.++..+.
T Consensus 296 ~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~ 350 (464)
T PF11864_consen 296 PFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIE 350 (464)
T ss_pred cccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHH
Confidence 12 248899999999888888877777777776 55555443444555554443
No 136
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.49 E-value=0.0032 Score=60.29 Aligned_cols=139 Identities=17% Similarity=0.224 Sum_probs=111.7
Q ss_pred CchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhh-hhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCC
Q 001249 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI-GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1114)
Q Consensus 140 ~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1114)
.+..+...+.+.++++++..|-.|+..++.++++. .+.+..+....+..+.+.++.+.+..++..++.++..++....+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45566677778888999999999999999999997 56676788889999999998876778899999999999988654
Q ss_pred cc--hHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Q 001249 219 SA--DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQI 280 (1114)
Q Consensus 219 ~~--~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~ 280 (1114)
.. .++.....+|.+++.+.+..++ ......++.+|..+...+|..|+|+...+-..+...
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 22 3344566788888888887664 566778999999999999999999988777666554
No 137
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=1 Score=61.00 Aligned_cols=524 Identities=16% Similarity=0.131 Sum_probs=252.5
Q ss_pred hhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Q 001249 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-NEATAQEALELLI 256 (1114)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~-~~~~~~~~~~~l~ 256 (1114)
+.|+++.++..+..+|+. +++++..+++++.-++..+....-.+.+....+.+++.|...+... +...-..|+++++
T Consensus 715 Llpylp~LM~PLv~aLkg--s~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILG 792 (3550)
T KOG0889|consen 715 LLPYLPLLMKPLVFALKG--SPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILG 792 (3550)
T ss_pred hhhhhhhhhhHHHHHhcC--CHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 567888888888888886 6899999999999988876322222234455666777777766543 5667788999999
Q ss_pred HHHccchHHHHH-----------------------------HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhc
Q 001249 257 ELAGTEPRFLRR-----------------------------QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER 307 (1114)
Q Consensus 257 ~l~~~~~~~~~~-----------------------------~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 307 (1114)
.+....-.++.+ .+...+............+...|.+|...+.......-+
T Consensus 793 KlgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~~~~~~ 872 (3550)
T KOG0889|consen 793 KLGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDLLLMVN 872 (3550)
T ss_pred hhcCcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHHHHHHHHh
Confidence 888765433211 122334444444443444556677776666554332101
Q ss_pred cchhhhcchhhHHHHHHHHHHh---hcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 001249 308 APGMMRKLPQFINRLFAILMSM---LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPA 384 (1114)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~l~~~---l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 384 (1114)
.+ ..+......+.+..... ..+..+...|.... ......+.+..-..++..+.-....+++.+...+++..
T Consensus 873 ~~---~~~~~~~~~l~~~~~~~i~~~~e~~~~n~~~~~~---~~~~~~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~~ 946 (3550)
T KOG0889|consen 873 LS---ADFKSSIRQLLTLVVWSIDLRLECCEINLDLTER---YKSQDYSDRSIFVNALISLFYATSCKELRDEAQDFLEA 946 (3550)
T ss_pred hh---ccchhhHHHHHHhhcchHHHhhHhhhcccccccc---ccccchhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHH
Confidence 11 01111111122211110 00000000000000 00000000111111111111000001122222222221
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhcH----HH---H--HHh--HHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhch--
Q 001249 385 YLAAPEWQKHHAALIALAQIAEGCA----KV---M--VKN--LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-- 451 (1114)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~----~~---~--~~~--l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-- 451 (1114)
. .|+-++.+.-....+.. .. . ... -..+++.+...+...++.++.++..++..+......
T Consensus 947 i-------l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l 1019 (3550)
T KOG0889|consen 947 I-------LRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLIL 1019 (3550)
T ss_pred H-------HHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhh
Confidence 1 11222211111111000 00 0 011 224678899999999999999999888877654321
Q ss_pred -----hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHH----H
Q 001249 452 -----DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQE----G 522 (1114)
Q Consensus 452 -----~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~----~ 522 (1114)
....+....+++.+++.-.+ +.+.-+...+.+|..+++..+...+..+.-.++..++..+.+...++.. .
T Consensus 1020 ~~~~~~~~lpi~~~l~~k~~~lCy~-~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~ 1098 (3550)
T KOG0889|consen 1020 GSPERAFKLPMFEYLLEKLCHLCYD-STWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDE 1098 (3550)
T ss_pred cCcchhhccchHHHHHHHHHHHhcc-HhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHH
Confidence 11234566777778877777 7888888899999999988875555566667777777777654332222 2
Q ss_pred HHHHHHHHHHhhhh-----hhh-hhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHH-
Q 001249 523 ALTALASVADSSQE-----HFQ-KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVL- 595 (1114)
Q Consensus 523 al~~l~~l~~~~~~-----~~~-~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l- 595 (1114)
+...+-.+...... +-. .....++..+...+.+++ ..+|..+..++..++...|.+ ........-+.+
T Consensus 1099 ~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN----~~VR~~~~~~L~~i~~~s~~~-v~~L~~p~K~~ll 1173 (3550)
T KOG0889|consen 1099 AKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPN----SDVREFSQKLLRLISELSGKS-VVKLLEPFKDVLL 1173 (3550)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHh
Confidence 22222222221111 111 222334444444443332 368898999999888766632 222222222222
Q ss_pred HHHhcCCCCC-CCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhh-c
Q 001249 596 MSLQGSQMET-DDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETIT-L 673 (1114)
Q Consensus 596 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 673 (1114)
.......... ........+.+. ..|...++.+-.|-..+.-........ . +.++++.+. .
T Consensus 1174 ~p~f~k~lr~~p~~~qig~vd~~-~fC~~l~p~~f~~~~~l~~l~~~~~~L------a-----------~~~~~~~~~i~ 1235 (3550)
T KOG0889|consen 1174 SPIFKKPLRALPFTIQIGHLDAI-TFCLSLGPCLFDFTEELYRLKRFLIAL------A-----------DAEEDELATIQ 1235 (3550)
T ss_pred ccccccccccCCHHHHhhhHHHH-HHHHHcCCcccCchHHHHHHHHHHHHh------h-----------hhhhhhhhhhh
Confidence 1111100000 000111111111 244455665544444433321111100 0 111112111 1
Q ss_pred CCceeeecchhHHHHHHHHHHHHHHHHHhhh---hccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHH
Q 001249 674 GDKRIGIKTSVLEEKATACNMLCCYADELKE---GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 741 (1114)
Q Consensus 674 ~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~---~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~ 741 (1114)
....++..+.....|..++.+++......+- ...||.+.++..+.+.+... +.++...+..++....
T Consensus 1236 k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~-~~Ei~~~~~~~l~~v~ 1305 (3550)
T KOG0889|consen 1236 KTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR-SSELIEVALEGLRKVL 1305 (3550)
T ss_pred cccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC-hHHHHHHHHHHHHhhh
Confidence 1222233333334566777777766554432 34678888888888887754 6778777777765544
No 138
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.015 Score=66.70 Aligned_cols=225 Identities=15% Similarity=0.202 Sum_probs=155.7
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHH
Q 001249 385 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPA 464 (1114)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~ 464 (1114)
.+.++....|-+|+..+..+++.-...-.-.-..++...+..+.|.++-|--.|...+..+|+..+ +.++|.
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~il~d 806 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------EDILPD 806 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hhhHHH
Confidence 345677889999999999999854322223445788999999999999998888888877776543 456666
Q ss_pred HHh-hcc--CCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhh
Q 001249 465 LAG-AMD--DFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKY 541 (1114)
Q Consensus 465 l~~-~l~--~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~ 541 (1114)
+.. ..+ +...++-+.....++.+++...+ +.+..|...++..+++.+++++...|..++..+|.++.........+
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G-el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALG-ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 655 222 21223455666788999988887 56778999999999999999988999999999999998776544556
Q ss_pred HhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhH----HHHHHHHHHHhcCCCCCCCchhhHHHHHH
Q 001249 542 YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA----KQVMEVLMSLQGSQMETDDPTTSYMLQAW 617 (1114)
Q Consensus 542 ~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~----~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 617 (1114)
+..+...+....+. +....+|..|+..+..+....| +...|.. -+....+..... .+.++.++-.+..|+
T Consensus 886 ~~ev~~~Il~l~~~---d~s~~vRRaAv~li~~lL~~tg-~dlLpilr~~l~Dl~~tl~~~vr--~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 886 FHEVLQLILSLETT---DGSVLVRRAAVHLLAELLNGTG-EDLLPILRLLLIDLDETLLSYVR--QHDDDGLKLHAQLCL 959 (982)
T ss_pred HHHHHHHHHHHHcc---CCchhhHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHH
Confidence 66677666666543 3456788889999999888888 5565632 233333333222 234454555555555
Q ss_pred HHHHHHh
Q 001249 618 ARLCKCL 624 (1114)
Q Consensus 618 ~~l~~~~ 624 (1114)
..+-.++
T Consensus 960 eei~a~l 966 (982)
T KOG4653|consen 960 EEIQAAL 966 (982)
T ss_pred HHHHHHH
Confidence 5443333
No 139
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.016 Score=67.72 Aligned_cols=147 Identities=20% Similarity=0.230 Sum_probs=104.2
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCC-ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHh
Q 001249 390 EWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1114)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~ 467 (1114)
+.+.|-.|.+.|+.++.+.+-.-...+ ..++...+..|+|+ .|..|.=++.|||++-+.+...--...-......+..
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 368899999999999988664333333 36788889999994 8999999999999998876431101123345667778
Q ss_pred hccCCCChhHHHHHHHHHHHhhhcCCcc----------ccc-----CchHHHHH----HHHHHhhcCChhHHHHHHHHHH
Q 001249 468 AMDDFQNPRVQAHAASAVLNFSENCTPE----------ILT-----PYLDGIVS----KLLVLLQNGKQMVQEGALTALA 528 (1114)
Q Consensus 468 ~l~~~~~~~v~~~a~~al~~l~~~~~~~----------~l~-----~~l~~il~----~L~~~l~~~~~~v~~~al~~l~ 528 (1114)
.|.| +.++||.+|..||+.|+.+...+ .+. .-.+..+. .++..+++.++-+|.+...+++
T Consensus 650 ~LsD-~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 650 LLSD-PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HhcC-ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 8888 89999999999999999864211 000 11223333 5666778888999998888888
Q ss_pred HHHHhhhhh
Q 001249 529 SVADSSQEH 537 (1114)
Q Consensus 529 ~l~~~~~~~ 537 (1114)
.++.....+
T Consensus 729 ~~~~g~~~~ 737 (1387)
T KOG1517|consen 729 HFVVGYVSH 737 (1387)
T ss_pred HHHHhhHHH
Confidence 776554443
No 140
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.43 E-value=0.0097 Score=61.02 Aligned_cols=190 Identities=19% Similarity=0.223 Sum_probs=120.6
Q ss_pred HHHHHhhC-CCChhHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhH-Hh
Q 001249 380 EQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QN 455 (1114)
Q Consensus 380 ~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~ 455 (1114)
+.+...++ +.++..++.++.+++..+.... -.+.+. ..++.+.+.+.++++.+|..|++++..++....... .+
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~--nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik 92 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPF--NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK 92 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChh--HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH
Confidence 33344444 5689999999999998765322 122333 357888999999999999999999998876543221 13
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
.|.+.++..+.. ..-+..+|.++..+|.++.-.-. ....+...++.++.++..++..+|..++.++..++..-.
T Consensus 93 ~~i~~Vc~~~~s---~~lns~~Q~agLrlL~nLtv~~~---~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~ 166 (254)
T PF04826_consen 93 MYIPQVCEETVS---SPLNSEVQLAGLRLLTNLTVTND---YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD 166 (254)
T ss_pred HHHHHHHHHHhc---CCCCCHHHHHHHHHHHccCCCcc---hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHH
Confidence 344444444433 21357899999999998853321 123344556777888999999999999999999886422
Q ss_pred hhhhhhH-hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhch
Q 001249 536 EHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK 581 (1114)
Q Consensus 536 ~~~~~~~-~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~ 581 (1114)
- ....+ .+.+..+..++.... ...+-.+++..+..+...+++
T Consensus 167 ~-~~~Ll~~q~~~~~~~Lf~~~~---~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 167 M-TRELLSAQVLSSFLSLFNSSE---SKENLLRVLTFFENINENIKK 209 (254)
T ss_pred H-HHHHHhccchhHHHHHHccCC---ccHHHHHHHHHHHHHHHhhCc
Confidence 1 11111 245556666664432 233444456666666555543
No 141
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.43 E-value=0.0015 Score=62.53 Aligned_cols=143 Identities=21% Similarity=0.254 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHhh-cHHHHHHhHHHHHHH------------HHhcCCCCChhHHHHHHHHHHHhHhhhchhHHh---
Q 001249 392 QKHHAALIALAQIAEG-CAKVMVKNLEQVLSM------------VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN--- 455 (1114)
Q Consensus 392 ~~r~aal~~l~~l~~~-~~~~~~~~l~~i~~~------------l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--- 455 (1114)
++|.+|+.+|..+++. .+..+-.|...++|. +.-.+.|+++++|.+|+.++..+.+..++.+..
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4788899999888887 334455555555443 233568999999999999999998876543210
Q ss_pred ----------------hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc-CchHHHHHHHHHHhhcCChh
Q 001249 456 ----------------QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT-PYLDGIVSKLLVLLQNGKQM 518 (1114)
Q Consensus 456 ----------------~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~-~~l~~il~~L~~~l~~~~~~ 518 (1114)
..+.++=..|+..+..+.+..+....+.++..++.+.+-..+. .+++.++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1112233445556666567778888999999999887654343 46778888888899999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 001249 519 VQEGALTALASVADSS 534 (1114)
Q Consensus 519 v~~~al~~l~~l~~~~ 534 (1114)
++..++.+++.+....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999988653
No 142
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.41 E-value=0.00021 Score=45.95 Aligned_cols=30 Identities=50% Similarity=0.639 Sum_probs=27.3
Q ss_pred HHHHHHHhccCCChhHHhhhhHHHHHHHhh
Q 001249 924 YLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1114)
Q Consensus 924 i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1114)
++|.+++.++|+++.||.+|++++|.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999876
No 143
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.39 E-value=0.00073 Score=57.38 Aligned_cols=86 Identities=34% Similarity=0.552 Sum_probs=67.2
Q ss_pred HHHHHhcC-CCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc
Q 001249 420 LSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1114)
Q Consensus 420 ~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~ 498 (1114)
++.+++.+ +|+++.+|..++++|+++. .+.++|.+...++| +++.||..|+.+|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKD-EDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTS-SSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcC-CCHHHHHHHHHHHHHhC---------
Confidence 46677777 8999999999999998542 23678888888888 99999999999998762
Q ss_pred CchHHHHHHHHHHhhcC-ChhHHHHHHHHHH
Q 001249 499 PYLDGIVSKLLVLLQNG-KQMVQEGALTALA 528 (1114)
Q Consensus 499 ~~l~~il~~L~~~l~~~-~~~v~~~al~~l~ 528 (1114)
-+..++.|...++++ +..+|..+..+||
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 244567777777665 4667999988875
No 144
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.41 Score=54.20 Aligned_cols=324 Identities=14% Similarity=0.127 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC--ChhhHHHHHHHHHHhhhhhhhh
Q 001249 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQYIGDT 177 (1114)
Q Consensus 100 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~--~~~~r~~al~~l~~l~~~~~~~ 177 (1114)
....+.+.+.+-|.+ .++.-..-+-++|+.+...+......++ +-.++.++ ..-+|+.|..+|-.+.+..++.
T Consensus 108 l~klvin~iknDL~s-rn~~fv~LAL~~I~niG~re~~ea~~~D----I~KlLvS~~~~~~vkqkaALclL~L~r~spDl 182 (938)
T KOG1077|consen 108 LMKLVINSIKNDLSS-RNPTFVCLALHCIANIGSREMAEAFADD----IPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL 182 (938)
T ss_pred HHHHHHHHHHhhhhc-CCcHHHHHHHHHHHhhccHhHHHHhhhh----hHHHHhCCcchHHHHHHHHHHHHHHHhcCccc
Confidence 333444444555554 4555555566788887665443222233 33444433 4467888888888888887665
Q ss_pred hhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC-------------C
Q 001249 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-------------N 244 (1114)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~-------------~ 244 (1114)
+. .......+...|.|. +..|-.++...+..++... ++.+...+|.-+..+....... .
T Consensus 183 ~~--~~~W~~riv~LL~D~-~~gv~ta~~sLi~~lvk~~-----p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~ 254 (938)
T KOG1077|consen 183 VN--PGEWAQRIVHLLDDQ-HMGVVTAATSLIEALVKKN-----PESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPA 254 (938)
T ss_pred cC--hhhHHHHHHHHhCcc-ccceeeehHHHHHHHHHcC-----CHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCC
Confidence 43 234555677778886 6667677777776666653 3455666666665554433211 1
Q ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhc----------
Q 001249 245 EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRK---------- 314 (1114)
Q Consensus 245 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~---------- 314 (1114)
|-.....+++|.. .- ...|..+|..-.+++..+...-...| ..++
T Consensus 255 PWL~vKl~rlLq~-----------------------~p-~~~D~~~r~~l~evl~~iLnk~~~~~-~~k~vq~~na~naV 309 (938)
T KOG1077|consen 255 PWLQVKLLRLLQI-----------------------YP-TPEDPSTRARLNEVLERILNKAQEPP-KSKKVQHSNAKNAV 309 (938)
T ss_pred hHHHHHHHHHHHh-----------------------CC-CCCCchHHHHHHHHHHHHHhccccCc-cccchHhhhhHHHH
Confidence 1122222222221 11 11233445444455444443211011 0000
Q ss_pred -------------chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHH
Q 001249 315 -------------LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQ 381 (1114)
Q Consensus 315 -------------~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~ 381 (1114)
-++.+.+.+..|-+.+..- |...+-.|.+.+..|+..-...+.+..=...
T Consensus 310 LFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~r-----------------E~NiRYLaLEsm~~L~ss~~s~davK~h~d~ 372 (938)
T KOG1077|consen 310 LFEAISLAIHLDSEPELLSRAVNQLGQFLSHR-----------------ETNIRYLALESMCKLASSEFSIDAVKKHQDT 372 (938)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcc-----------------cccchhhhHHHHHHHHhccchHHHHHHHHHH
Confidence 0112222222222222211 2234445555555555431111111111223
Q ss_pred HHHhhC-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhh
Q 001249 382 LPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1114)
Q Consensus 382 l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 460 (1114)
+...++ ..|-..|+-|+..|..++.. .....|+.-++++|...++.+|.....-+.-+++.+..+. ..|.+.
T Consensus 373 Ii~sLkterDvSirrravDLLY~mcD~------~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy-~WyVdv 445 (938)
T KOG1077|consen 373 IINSLKTERDVSIRRRAVDLLYAMCDV------SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDY-SWYVDV 445 (938)
T ss_pred HHHHhccccchHHHHHHHHHHHHHhch------hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCc-chhHHH
Confidence 333344 67888999999999988864 4556788888888888999999988777778888887766 566665
Q ss_pred hHHHH---------------HhhccCCCChhHHHHHHHHHHH
Q 001249 461 VLPAL---------------AGAMDDFQNPRVQAHAASAVLN 487 (1114)
Q Consensus 461 il~~l---------------~~~l~~~~~~~v~~~a~~al~~ 487 (1114)
++..+ ++..- .+++++..|+.-+-.
T Consensus 446 iLqLiriagd~vsdeVW~RvvQiVv--Nnedlq~yaak~~fe 485 (938)
T KOG1077|consen 446 ILQLIRIAGDYVSDEVWYRVVQIVV--NNEDLQGYAAKRLFE 485 (938)
T ss_pred HHHHHHHhcccccHHHHHHhheeEe--cchhhhHHHHHHHHH
Confidence 55543 22222 356677766655443
No 145
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.35 E-value=0.0076 Score=71.46 Aligned_cols=163 Identities=17% Similarity=0.222 Sum_probs=136.0
Q ss_pred hHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHH
Q 001249 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1114)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1114)
...+...+.-...|.+..+-.-++.+|..++.+.+..+.++...+.|.++..+.+..+.+|.+...++-.++..
T Consensus 293 ~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------ 366 (815)
T KOG1820|consen 293 TGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------ 366 (815)
T ss_pred chHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------
Confidence 33444455556678899999999999999999999888899999999999999999999999999999888763
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc-cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001249 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1114)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~-~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1114)
..+..+.+.+...+.+ .+|.++..+...+...+...++. ....-...+++.+....++.+..||..++.+++.+...
T Consensus 367 -~~l~~~~~~I~e~lk~-knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 367 -TPLSKMSEAILEALKG-KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred -ccHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 3466788999999999 99999999999999998887742 23355788999999999999999999999999999999
Q ss_pred hhhh-hhhhHhhh
Q 001249 534 SQEH-FQKYYDAV 545 (1114)
Q Consensus 534 ~~~~-~~~~~~~i 545 (1114)
.|+. +..|+..+
T Consensus 445 ~Ge~~~~k~L~~~ 457 (815)
T KOG1820|consen 445 HGEEVFKKLLKDL 457 (815)
T ss_pred hhHHHHHHHHHhh
Confidence 9864 34444433
No 146
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.28 E-value=0.00033 Score=45.07 Aligned_cols=31 Identities=32% Similarity=0.626 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHhHhhh
Q 001249 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDL 449 (1114)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 449 (1114)
++|.+++.++|+++.||.+|+++++.+++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 5789999999999999999999999998753
No 147
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.27 E-value=1.4 Score=58.03 Aligned_cols=199 Identities=15% Similarity=0.154 Sum_probs=127.2
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCC-HHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccC--CCCchhh
Q 001249 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLS-LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP--ENGWPEL 144 (1114)
Q Consensus 68 ~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~-~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~--~~~w~~l 144 (1114)
+.+..++.+|.-.||++-.+.. .+..++ -..+..+.+.+...+.+..+..+|..+.+++..+...... +..|..+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfl--e~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktI 1225 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFL--EREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM 1225 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhc--chhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHH
Confidence 4467889999998888765420 011121 1223344455555566667889999999999877654332 2589999
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhh----hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCc-
Q 001249 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT----PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS- 219 (1114)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~- 219 (1114)
+..+.....+.++.....|+.++..|+.+.-..+. ..+..++..+.+..+...+.++-..|+..|..+...+...
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 99999888888888888999999988876433222 3455666666655544334566667777777554433100
Q ss_pred ------------------------c------hHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHH
Q 001249 220 ------------------------A------DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR 268 (1114)
Q Consensus 220 ------------------------~------~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 268 (1114)
. ..+....+|=.++..+.....+..+++|..|++.|-.+...++..|.+
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~ 1384 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSL 1384 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCH
Confidence 0 011111233335555666666889999999999998888877655543
No 148
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.62 Score=53.60 Aligned_cols=195 Identities=13% Similarity=0.082 Sum_probs=114.4
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHhcccCC--------C-----CcccCCCHHHHHHHHHHHHHHHhhchhhhH---
Q 001249 57 LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD--------S-----FLWPRLSLHTQSSLKSMLLQSIQLESAKSI--- 120 (1114)
Q Consensus 57 ~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~--------~-----~~w~~l~~~~~~~i~~~ll~~l~~e~~~~v--- 120 (1114)
.++.|+.-..++.-.+-|+-|+.-||..-++.. + -.-..++++....+...++..+.++..+.+
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dd 102 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDD 102 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhccc
Confidence 456677777666667777777777776554420 0 000123344444444444444443211111
Q ss_pred ---HHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhh---hHHHHHHHHHHhhc
Q 001249 121 ---SKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP---HLKHLHAVFLNCLT 194 (1114)
Q Consensus 121 ---r~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~---~~~~l~~~l~~~l~ 194 (1114)
....+.-++...- .-++.+..+++.+..-|-.+|..++..+..+...-|..+.. ..+.-+..+...|.
T Consensus 103 s~qsdd~g~~iae~fi------k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 103 STQSDDLGLWIAEQFI------KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred chhhhHHHHHHHHHHH------cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 1112222222111 12677888888888888899999999999999887776554 23455666777788
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHccc
Q 001249 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG----NEATAQEALELLIELAGTE 262 (1114)
Q Consensus 195 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~----~~~~~~~~~~~l~~l~~~~ 262 (1114)
|. ...+|..++-.+..+...-+.....-.|. .+...|+..+... ..-+...|+..+..+.+..
T Consensus 177 Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFE----NaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 177 DS-REPIRNEAILLLSELVKDNSSIQKLVAFE----NAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred hh-hhhhchhHHHHHHHHHccCchHHHHHHHH----HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 86 88999999999988887543211111222 3444455544321 2246778888888887754
No 149
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.24 E-value=0.043 Score=58.62 Aligned_cols=205 Identities=20% Similarity=0.266 Sum_probs=136.4
Q ss_pred CCCChhHHHHHHHHHHHHHh--hcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhc--hhHHhhhhhhhH
Q 001249 387 AAPEWQKHHAALIALAQIAE--GCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG--PDLQNQFHPQVL 462 (1114)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~~--~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~il 462 (1114)
.+..-+.|++++..+..+.. ...+.+......++..+.+.++-....-+..|+.+++-++-.++ ... ...+..+.
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~-~ei~~~~~ 131 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS-EEIFEELK 131 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH-HHHHHHHH
Confidence 44568899999999988764 35577778888999999999987777677788888998887765 433 56788899
Q ss_pred HHHHhhccCCC-ChhHHHHHHHHHHHhhh--cCCcccccCchHHHHHHHHHH--hh----------cCChhHHHHHHHHH
Q 001249 463 PALAGAMDDFQ-NPRVQAHAASAVLNFSE--NCTPEILTPYLDGIVSKLLVL--LQ----------NGKQMVQEGALTAL 527 (1114)
Q Consensus 463 ~~l~~~l~~~~-~~~v~~~a~~al~~l~~--~~~~~~l~~~l~~il~~L~~~--l~----------~~~~~v~~~al~~l 527 (1114)
|.|.+.+.|.. .+.+|.+++.+|+-.+- ....+.+.. .-..++.++.. .+ .+++.+...|+.++
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~-~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEE-LMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHH-HHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 99999888732 34566677666655433 222221110 01233322221 11 11356899999999
Q ss_pred HHHHHhhhh-hhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhch--hhh-hhhHHHHHHHHHH
Q 001249 528 ASVADSSQE-HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK--DKF-RDDAKQVMEVLMS 597 (1114)
Q Consensus 528 ~~l~~~~~~-~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~--~~f-~~~~~~i~~~l~~ 597 (1114)
+-++..++. .+..+....+|.|...|.. .+..+|..|-++|+.+...... +.| .++.+.+++.+..
T Consensus 211 ~lLlt~~~~~~~~~~~~~~~~~l~~lL~s----~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~ 280 (309)
T PF05004_consen 211 ALLLTTLPDSKLEDLLEEALPALSELLDS----DDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRE 280 (309)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHH
Confidence 999988775 4667778888988888754 2456899899999887654331 122 3344445544444
No 150
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.24 E-value=1.7 Score=58.35 Aligned_cols=266 Identities=14% Similarity=0.136 Sum_probs=154.0
Q ss_pred HHhcCCCCChhHHHHHHHHHHHhHhhhch------hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc
Q 001249 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGP------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1114)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 496 (1114)
+...+...++.+|..+..++..+..+... .. .++...++..++..-...+++.++.+....+. +...+.
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~-~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~- 560 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHA-LQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQ- 560 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchH-HHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhh-
Confidence 34455667888999998777776654422 11 13455566666554332267777776665544 211111
Q ss_pred ccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHH--HHHHHHH
Q 001249 497 LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAK--SMECISL 574 (1114)
Q Consensus 497 l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~--a~~~l~~ 574 (1114)
--.+..+..++..+.+..-.+++.+...+|.++...+..+.|++.........-+.-. ........ ...+.+.
T Consensus 561 --laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~s---g~~r~~~~~a~~~~~~i 635 (2341)
T KOG0891|consen 561 --LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFS---GMARTKEESAKLLCELI 635 (2341)
T ss_pred --hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhc---chHHhHHHHHHHhhHHH
Confidence 1234456667888888888889989888888777555333344433332222211110 00000000 0111111
Q ss_pred HHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCC
Q 001249 575 VGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSA 654 (1114)
Q Consensus 575 i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~ 654 (1114)
.+.. ....||...++..+...... ....+-..+..+.+.+|.+.|.++..+....++.+.+.+...
T Consensus 636 ~~~~---~~i~~~v~~~l~~~~~~~~~---~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~-------- 701 (2341)
T KOG0891|consen 636 ISSP---VLISPYVGPILLVLLPKLQD---PSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQ-------- 701 (2341)
T ss_pred HHHH---HHHHhhcCchHHHHHHHHhc---cchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHh--------
Confidence 2211 23456666666655553221 222455677788999999999888777777777766666321
Q ss_pred CCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccH--HHHHHHhhhcccccCCHHHHHH
Q 001249 655 DSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI--DQVAPTLVPLLKFYFHEEVRKA 732 (1114)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~--~~~~~~l~~~l~~~~~~~vr~~ 732 (1114)
+....+.+|+.+++.+....+-...||. |.++..+...+.......+|..
T Consensus 702 ----------------------------s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~ 753 (2341)
T KOG0891|consen 702 ----------------------------SSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRRE 753 (2341)
T ss_pred ----------------------------hhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHH
Confidence 1122456778888888887776777775 6677776666555557788888
Q ss_pred HHHhHHHH
Q 001249 733 AVSAMPEL 740 (1114)
Q Consensus 733 a~~al~~l 740 (1114)
+...++.+
T Consensus 754 ~v~~~g~~ 761 (2341)
T KOG0891|consen 754 AIRLLGLL 761 (2341)
T ss_pred HHHHhhhh
Confidence 88887754
No 151
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.20 E-value=0.0055 Score=58.66 Aligned_cols=141 Identities=19% Similarity=0.207 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHHhcccCC---CCchhhHHHH-----------H-HhhcCCChhhHHHHHHHHHHhhhhhhhh------
Q 001249 119 SISKKLCDTVSELASNILPE---NGWPELLPFM-----------F-QCVSSDSVKLQESAFLIFAQLSQYIGDT------ 177 (1114)
Q Consensus 119 ~vr~~~~~~i~~ia~~~~~~---~~w~~ll~~l-----------~-~~~~~~~~~~r~~al~~l~~l~~~~~~~------ 177 (1114)
.+|..+..++..+++...++ +.|+.++|.- + -.+.++++.+|.+|+.++..+.+.....
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 37888889999999874343 4898888765 2 2345788899999999999998764322
Q ss_pred -------h-------hhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC
Q 001249 178 -------L-------TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (1114)
Q Consensus 178 -------~-------~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~ 243 (1114)
| ...+.++...+...+..+.+..+....++|+..++...+- ...-.++++.++..+...+.+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY---~rL~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPY---HRLPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCCh---hhcCHhHHHHHHHHHHHHHhcC
Confidence 1 2234556667777787776778888999999999987531 1122467888888888888888
Q ss_pred CHHHHHHHHHHHHHHHccc
Q 001249 244 NEATAQEALELLIELAGTE 262 (1114)
Q Consensus 244 ~~~~~~~~~~~l~~l~~~~ 262 (1114)
|.+++..++.+++.+....
T Consensus 158 d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CCcHHHHHHHHHHHHHcCC
Confidence 9999999999998877643
No 152
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.17 E-value=0.12 Score=58.53 Aligned_cols=140 Identities=14% Similarity=0.145 Sum_probs=88.6
Q ss_pred hhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcch
Q 001249 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1114)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 221 (1114)
.+-...++...+. +...+..|...+.....++++ ..+..+..++....|+ +..||..|++.|..++..-
T Consensus 22 ~~~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~----l~~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~----- 90 (556)
T PF05918_consen 22 EEDYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPD----LQEEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDN----- 90 (556)
T ss_dssp HHHHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GG----GHHHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T------
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhH-----
Confidence 3445555665553 567888888888888777666 3556666777777887 9999999999998777642
Q ss_pred HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHH
Q 001249 222 RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF-LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (1114)
Q Consensus 222 ~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~ 300 (1114)
.++++.+..+|.++++.+++..+..+=.+|..+....+.. +...+.++. .....++.+|..++.|+..
T Consensus 91 ----~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~-------~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 91 ----PEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIE-------SSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp -----T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----------HS-HHHHHHHHHHHHH
T ss_pred ----HHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-------hcccCchHHHHHHHHHHHH
Confidence 3567788899999999888888888888888777655432 222222222 1123467799999999875
Q ss_pred HHH
Q 001249 301 LAE 303 (1114)
Q Consensus 301 l~~ 303 (1114)
-..
T Consensus 160 kl~ 162 (556)
T PF05918_consen 160 KLK 162 (556)
T ss_dssp HGG
T ss_pred HHh
Confidence 433
No 153
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.14 E-value=2.2 Score=58.00 Aligned_cols=94 Identities=17% Similarity=0.298 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHhhcCC--------CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 001249 181 HLKHLHAVFLNCLTNS--------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEAL 252 (1114)
Q Consensus 181 ~~~~l~~~l~~~l~~~--------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~ 252 (1114)
++..++|.|++.+.+. +..+.|..+++.+..+... +.+......++.++.+.+..++++...-|+
T Consensus 46 ~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~-------e~~~~~~~~~~~~~~~vl~~dNeen~~l~l 118 (3550)
T KOG0889|consen 46 FLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHN-------EVFKPFSQELLKVLMRVLTNDNEENAILCL 118 (3550)
T ss_pred HHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccH-------HHHHHHHHHHHHHHHHHHhcccchhhhhHH
Confidence 5788888888887754 1346788888877766543 456666667888888888888999999999
Q ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHh
Q 001249 253 ELLIELAGTEPRFLRRQLVDVVGSMLQIA 281 (1114)
Q Consensus 253 ~~l~~l~~~~~~~~~~~~~~l~~~ll~~~ 281 (1114)
+++..+.+.+...+..++..++.++.++.
T Consensus 119 kii~~l~r~f~~~~~~~v~~fl~~V~~ly 147 (3550)
T KOG0889|consen 119 KIITDLFRQFKSLVEQHVQPFLDIVIDLY 147 (3550)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888777654
No 154
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.14 E-value=0.63 Score=51.54 Aligned_cols=353 Identities=12% Similarity=0.107 Sum_probs=179.1
Q ss_pred CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH--HHHHHHHHHHHHHhhchhhhHHHHHHHHHHH
Q 001249 53 DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH--TQSSLKSMLLQSIQLESAKSISKKLCDTVSE 130 (1114)
Q Consensus 53 ~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~--~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ 130 (1114)
+.+.++..+++++.....+++.++..+++--++... ...+..+-+. .....-..++..|.. .+.-+...++.+++.
T Consensus 50 ~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~ 127 (429)
T cd00256 50 LSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAK 127 (429)
T ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHH
Confidence 445678889999988888999999999999988764 1111111110 001122345556665 588899999999999
Q ss_pred HHhcccCCCCc----hhhHHHHHHhhcCC-ChhhHHHHHHHHHHhhhhh--hhhhhhhHHHHHHHHHHhhcCCC-ChHHH
Q 001249 131 LASNILPENGW----PELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYI--GDTLTPHLKHLHAVFLNCLTNSN-NPDVK 202 (1114)
Q Consensus 131 ia~~~~~~~~w----~~ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~--~~~~~~~~~~l~~~l~~~l~~~~-~~~vr 202 (1114)
++..... ..- +.+++.+...++++ +...+..++.++..+...- ...+.. ...++.+...|+... +.+..
T Consensus 128 l~~~~~~-~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 128 LACFGLA-KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHhcCcc-ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHHHHHHHhhccccHHHH
Confidence 9874322 211 22444555555544 3566777888888876541 122211 113344444454431 44666
Q ss_pred HHHHHHHHHHHHhcCCcchHhHH--HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch-----HHHH-HHHH-HH
Q 001249 203 IAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-----RFLR-RQLV-DV 273 (1114)
Q Consensus 203 ~~a~~~l~~l~~~~~~~~~~~~~--~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~-----~~~~-~~~~-~l 273 (1114)
+.++-|+=-+ .+... ..+.. ..++|.+++.+... ..+.+..-++.+|..++.... ..+. ..+. .+
T Consensus 205 Y~~ll~lWlL--SF~~~-~~~~~~~~~~i~~l~~i~k~s---~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l 278 (429)
T cd00256 205 YQSIFCIWLL--TFNPH-AAEVLKRLSLIQDLSDILKES---TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV 278 (429)
T ss_pred HHHHHHHHHH--hccHH-HHHhhccccHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh
Confidence 6665555322 22211 11111 35667777766653 356777777888887776431 1111 1111 12
Q ss_pred HHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCC
Q 001249 274 VGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESS 353 (1114)
Q Consensus 274 ~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~ 353 (1114)
...+-.+...+-.|+++. ..++.+....+.. -.....+..|...+-...+. |...-. +| .
T Consensus 279 ~~~l~~L~~rk~~DedL~-edl~~L~e~L~~~---~k~ltsfD~Y~~El~sg~L~----------WSp~H~-se-----~ 338 (429)
T cd00256 279 LKTLQSLEQRKYDDEDLT-DDLKFLTEELKNS---VQDLSSFDEYKSELRSGRLH----------WSPVHK-SE-----K 338 (429)
T ss_pred HHHHHHHhcCCCCcHHHH-HHHHHHHHHHHHH---HHHcCCHHHHHHHHhcCCcc----------CCCCCC-Cc-----h
Confidence 221212222222344443 3445555444421 00001122233333222222 321100 00 0
Q ss_pred chhhHHHHHHHHHHHcCCCcchHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhcHH--HHHHhHHHHHHHHHhcCCCC
Q 001249 354 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAK--VMVKNLEQVLSMVLNSFRDP 430 (1114)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~d~ 430 (1114)
-|+- -..++-. +. + .++..+...+ .+.++..-..|+.=+|.++...|. .+...+. .-..++..+.++
T Consensus 339 FW~E---N~~kf~~----~~-~-~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~ 408 (429)
T cd00256 339 FWRE---NADRLNE----KN-Y-ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHE 408 (429)
T ss_pred HHHH---HHHHHHh----cc-h-HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCC
Confidence 1111 1111110 11 1 1222233333 355667777888888988887552 1211111 235678889999
Q ss_pred ChhHHHHHHHHHHHhH
Q 001249 431 HPRVRWAAINAIGQLS 446 (1114)
Q Consensus 431 ~~~vr~~a~~~l~~l~ 446 (1114)
++.||+.|+.|++.+.
T Consensus 409 d~~Vr~eAL~avQklm 424 (429)
T cd00256 409 DPNVRYEALLAVQKLM 424 (429)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998874
No 155
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.09 E-value=0.021 Score=58.59 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=122.1
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCch--hhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhh--hhhhh
Q 001249 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWP--ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD--TLTPH 181 (1114)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~--~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~ 181 (1114)
+.|+..|....++.++..+..+++..+......+.+. ..++.+...+.++++.+|+.|+.++..+...... .+..+
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 4677888876789999999999998876544333343 4588899999999999999999999988766433 23445
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001249 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1114)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 261 (1114)
+..++.... ..+-+..++.+++++|.++.-.-. ....+...+|. +..++..++...+..++++|..+++.
T Consensus 95 i~~Vc~~~~---s~~lns~~Q~agLrlL~nLtv~~~---~~~~l~~~i~~----ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 95 IPQVCEETV---SSPLNSEVQLAGLRLLTNLTVTND---YHHMLANYIPD----LLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHHh---cCCCCCHHHHHHHHHHHccCCCcc---hhhhHHhhHHH----HHHHHHcCChHHHHHHHHHHHHhccC
Confidence 555544433 332366888999999998853211 22333344444 44556678889999999999998874
Q ss_pred chHHHHHHHH-HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHh
Q 001249 262 EPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1114)
Q Consensus 262 ~~~~~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1114)
. ...+..+. +....++.+... +.+.++...++.++..+.+.
T Consensus 165 p-~~~~~Ll~~q~~~~~~~Lf~~-~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 P-DMTRELLSAQVLSSFLSLFNS-SESKENLLRVLTFFENINEN 206 (254)
T ss_pred H-HHHHHHHhccchhHHHHHHcc-CCccHHHHHHHHHHHHHHHh
Confidence 3 32222222 333334444432 33556666777777776653
No 156
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.04 Score=57.54 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=103.9
Q ss_pred CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHh
Q 001249 388 APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1114)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~ 467 (1114)
+.+...|+.|+.-|..+++.......-+--..+..++.++++.++.+|..|++.+|..+..-++.-..-.-...++.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 55788999999999998886543221111123445555999999999999999999998875442211123347788888
Q ss_pred hccCCCChhHHHHHHHHHHHhhhcCCcccccCchH-HHHHHHHHHhhc--CChhHHHHHHHHHHHHHHhhhhh
Q 001249 468 AMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQN--GKQMVQEGALTALASVADSSQEH 537 (1114)
Q Consensus 468 ~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~-~il~~L~~~l~~--~~~~v~~~al~~l~~l~~~~~~~ 537 (1114)
.+....+-.+|..|..|++.++.+..+.. ..++. .=+..|..++++ .+...+..++..++.+......+
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~-~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQ-DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHH-HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 88764566788999999999998876531 11111 115677778887 56778888999999988776543
No 157
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.99 E-value=0.01 Score=56.21 Aligned_cols=94 Identities=18% Similarity=0.126 Sum_probs=76.1
Q ss_pred HHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhH-hhhhhhhhhHhHHHHHHHhccCCChhHHhhhhHHHHHH---HhhcC
Q 001249 880 DELSSYLTPMWGKDKTAEERRIAICIFDDVAEQ-CREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVC---AEFGG 955 (1114)
Q Consensus 880 ~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~-~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l---~~~~~ 955 (1114)
..++|.+..-+.+. ...-|..|...+.++++. .+..+.|.++++++++-++++..+++|..++..+|..+ ....|
T Consensus 37 ~~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 37 HHYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 34556665555332 233577888999999999 77788999999999999999999999999999999999 55666
Q ss_pred CCchHHHHHHHHHHHHhhc
Q 001249 956 SVVKPLVGEALSRLNVVIR 974 (1114)
Q Consensus 956 ~~~~~~~~~~l~~L~~~l~ 974 (1114)
+.+.||+.++++.+.-...
T Consensus 116 ~aLvPyyrqLLp~ln~f~~ 134 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKN 134 (183)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8899999999999975444
No 158
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=1.1 Score=51.44 Aligned_cols=119 Identities=20% Similarity=0.218 Sum_probs=86.6
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcC-CCCChhHHHHHHHHHHHhHhhhchhHHhhhhhh
Q 001249 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1114)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 460 (1114)
+.-.++|.+-.+|++|..+||.+.-.-++ .++.++..| .+-||.||..++.+||-.|...+.. .
T Consensus 560 Lh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------e 624 (929)
T KOG2062|consen 560 LHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------E 624 (929)
T ss_pred hcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------H
Confidence 33456788999999999999988754443 222333333 3568999999999999988765532 2
Q ss_pred hHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCCh
Q 001249 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ 517 (1114)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~ 517 (1114)
.+..|-....| +..-||..|+-++.-+.-...+. +.|-...+-..+.+.+.+.+.
T Consensus 625 Ai~lLepl~~D-~~~fVRQgAlIa~amIm~Q~t~~-~~pkv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 625 AINLLEPLTSD-PVDFVRQGALIALAMIMIQQTEQ-LCPKVNGFRKQLEKVINDKHE 679 (929)
T ss_pred HHHHHhhhhcC-hHHHHHHHHHHHHHHHHHhcccc-cCchHHHHHHHHHHHhhhhhh
Confidence 33444445557 78899999999999887776643 678888888888888877654
No 159
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.96 E-value=0.33 Score=53.55 Aligned_cols=94 Identities=19% Similarity=0.285 Sum_probs=63.9
Q ss_pred hhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcch
Q 001249 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1114)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 221 (1114)
+...+.+.+.+.+.+..+|..+...++.+. ....++.+...+.+. ++.+|..|+.+++.+-.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~------- 103 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDE-DPRVRDAAADALGELGD------- 103 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC-------
Confidence 456777888888888888888887755432 335566777888887 88999999886654332
Q ss_pred HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001249 222 RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1114)
Q Consensus 222 ~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~ 260 (1114)
...+|.+++.+.. +.+..+|..+...|..+..
T Consensus 104 ----~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 104 ----PEAVPPLVELLEN---DENEGVRAAAARALGKLGD 135 (335)
T ss_pred ----hhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCc
Confidence 1223344444332 6788889888888887654
No 160
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.96 E-value=0.3 Score=53.94 Aligned_cols=262 Identities=23% Similarity=0.243 Sum_probs=149.5
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch
Q 001249 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1114)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 263 (1114)
.....+.+.+.+. +..+|..|...++.+-.. ..+..+...+.+.++.+|..+..+++.+-.
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~~~---------------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--- 103 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGELGSE---------------EAVPLLRELLSDEDPRVRDAAADALGELGD--- 103 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhhchH---------------HHHHHHHHHhcCCCHHHHHHHHHHHHccCC---
Confidence 4456677778887 899999998875433321 233444555667888999999887776542
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001249 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1114)
Q Consensus 264 ~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1114)
+..++.++..+.. +.+..+|..+...+..+-.. .. +..++..+.+......+...
T Consensus 104 -------~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~~------------~a----~~~l~~~l~~~~~~~a~~~~- 158 (335)
T COG1413 104 -------PEAVPPLVELLEN-DENEGVRAAAARALGKLGDE------------RA----LDPLLEALQDEDSGSAAAAL- 158 (335)
T ss_pred -------hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCch------------hh----hHHHHHHhccchhhhhhhhc-
Confidence 2233334444432 45788999988877765441 11 22233333221100000000
Q ss_pred CCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001249 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1114)
Q Consensus 344 ~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l 423 (1114)
+...+..-...+..++. +| .+...+.+.+.+.+.+..+|.++..+++.+.... ..+.+.+
T Consensus 159 -------~~~~~~~r~~a~~~l~~-~~----~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l 218 (335)
T COG1413 159 -------DAALLDVRAAAAEALGE-LG----DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLL 218 (335)
T ss_pred -------cchHHHHHHHHHHHHHH-cC----ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHH
Confidence 00111111222223332 12 2334455667777888899999999999887653 4566778
Q ss_pred HhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHH
Q 001249 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 503 (1114)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ 503 (1114)
...+.|+++.||..++.+++.+. .....+.+...+.+ .++.++..+..++. .. ....
T Consensus 219 ~~~~~~~~~~vr~~~~~~l~~~~-----------~~~~~~~l~~~l~~-~~~~~~~~~~~~~~----~~-------~~~~ 275 (335)
T COG1413 219 VKALSDESLEVRKAALLALGEIG-----------DEEAVDALAKALED-EDVILALLAAAALG----AL-------DLAE 275 (335)
T ss_pred HHHhcCCCHHHHHHHHHHhcccC-----------cchhHHHHHHHHhc-cchHHHHHHHHHhc----cc-------Cchh
Confidence 88899999999999999987753 23455556666666 56666555544443 11 1112
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001249 504 IVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1114)
Q Consensus 504 il~~L~~~l~~~~~~v~~~al~~l~~l~~ 532 (1114)
....+...+.+....++..+...++.+..
T Consensus 276 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 276 AALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred hHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 23334445556666666666555555443
No 161
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.95 E-value=1.3 Score=52.08 Aligned_cols=108 Identities=13% Similarity=0.202 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001249 183 KHLHAVFLNCLT-NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1114)
Q Consensus 183 ~~l~~~l~~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 261 (1114)
..++-.+...++ ++ ...||..|++.+.+...+.+ ....+|..+-.|.....++-..+|+.++..|.++...
T Consensus 575 ~~V~~mi~Rr~~~d~-k~~v~k~a~~~l~S~l~~cD-------~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~ 646 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTDD-KAPVKKAACSLLKSYLSYCD-------EASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLR 646 (1529)
T ss_pred HHHHHHHHHHhccCC-CcccchhhHHHHHHHHhccc-------hhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhh
Confidence 345556666676 54 67899999999998888753 1234444455555555677778999999999998877
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 001249 262 EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1114)
Q Consensus 262 ~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l 301 (1114)
.|..+. .-...+..+..++. +.+..+...|++++..+
T Consensus 647 ~pr~~~-~~~~wl~~li~~~~--d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 647 DPRLFS-LSSKWLHTLISMLN--DTESDVTEHARKLIMKV 683 (1529)
T ss_pred Cchhhh-hhHHHHHHHHHHHh--ccHHHHHHHHHHHHHHH
Confidence 766552 11122222222332 34556666777765544
No 162
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=1.2 Score=51.46 Aligned_cols=343 Identities=15% Similarity=0.197 Sum_probs=188.7
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcC--CChhhHHHHHHHHHHhhhhhh-----
Q 001249 103 SLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS--DSVKLQESAFLIFAQLSQYIG----- 175 (1114)
Q Consensus 103 ~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~--~~~~~r~~al~~l~~l~~~~~----- 175 (1114)
+-...|...+.+.+-..-|+.++..+..+++.+-.... ..-++.+++.++. .|++....++.++..+...-.
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~ 100 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVM 100 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhc
Confidence 34456667666656777789999999888886422110 1113334444432 366777788888877765421
Q ss_pred ------hh----hhh---hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhC
Q 001249 176 ------DT----LTP---HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN 242 (1114)
Q Consensus 176 ------~~----~~~---~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~ 242 (1114)
++ +.+ .-+..+..++..+... +-.||..+++.+.+++.+-+. .........|.-+..+...+.+
T Consensus 101 dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~--e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 101 DDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPT--ELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred ccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCH--HHHHHHHHCchhHHHHHHHHhh
Confidence 11 111 1134667778888876 899999999999999987531 1122223356666667777777
Q ss_pred CCHHHHHHHHHHHHHHHccchHHHHH--HHHHHHHHHHHHhccCC-cch-hHHHHHHHHHHHHHHhhhccchhhhcchhh
Q 001249 243 GNEATAQEALELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAES-LEE-GTRHLAIEFVITLAEARERAPGMMRKLPQF 318 (1114)
Q Consensus 243 ~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~l~~~ll~~~~~~~-~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 318 (1114)
..+-+|..++-.|.++++..+.. .+ -+..+++.++.++.... .+. -|..-|+-++..+.++.......++. ..
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~I-QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE-~~- 254 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSI-QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE-GS- 254 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchH-HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc-cc-
Confidence 77889999999999999876543 22 23466777777775443 233 25677888888888853222222222 12
Q ss_pred HHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhh--HHHHHHHHHHHcCCCc------------chHHHHHHHHH
Q 001249 319 INRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV--GQECLDRLAIALGGNT------------IVPVASEQLPA 384 (1114)
Q Consensus 319 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~--a~~~l~~l~~~~~~~~------------~~~~l~~~l~~ 384 (1114)
.+|.|.+.|....-. |++.-.|+..++ ...+|..+...++|.. .-..++..+..
T Consensus 255 ---~i~rL~klL~~f~~~---------d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~ 322 (970)
T KOG0946|consen 255 ---YIPRLLKLLSVFEFG---------DGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCT 322 (970)
T ss_pred ---cHHHHHhhcCccccc---------CcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHH
Confidence 344444443322110 000112222222 1112222222222211 01123334444
Q ss_pred hhCCC--ChhHHHHHHHHHHHHHhhcHH---HHH----HhH----HHHHHHHHhcCCCCC-hhHHHHHHHHHHHhHhhhc
Q 001249 385 YLAAP--EWQKHHAALIALAQIAEGCAK---VMV----KNL----EQVLSMVLNSFRDPH-PRVRWAAINAIGQLSTDLG 450 (1114)
Q Consensus 385 ~l~~~--~~~~r~aal~~l~~l~~~~~~---~~~----~~l----~~i~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~ 450 (1114)
.+-++ ...++..++...+.++.|+.. .+. ++. +.|+-.+........ +..|.++++|+..+...-.
T Consensus 323 il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~ 402 (970)
T KOG0946|consen 323 ILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND 402 (970)
T ss_pred HHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence 44443 456778888888888887653 222 112 223333444444443 4679999999877653321
Q ss_pred hhHHhhhhhhhHHHH
Q 001249 451 PDLQNQFHPQVLPAL 465 (1114)
Q Consensus 451 ~~~~~~~~~~il~~l 465 (1114)
..+..++..++|.-
T Consensus 403 -~gq~~~l~tllp~~ 416 (970)
T KOG0946|consen 403 -DGQRKFLKTLLPSS 416 (970)
T ss_pred -hhHHHHHHHHhhhh
Confidence 22244555555543
No 163
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.86 E-value=0.015 Score=50.66 Aligned_cols=98 Identities=17% Similarity=0.287 Sum_probs=79.8
Q ss_pred ccCchHHHHHHHHHHhhc----CChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHH
Q 001249 497 LTPYLDGIVSKLLVLLQN----GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (1114)
Q Consensus 497 l~~~l~~il~~L~~~l~~----~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l 572 (1114)
+.+++-.++..+-..+++ .+...|..++.+++.+....++.+..+.++++-.|...+.. ..+|..+++|+
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~------~~l~~~al~~W 78 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI------PELREEALSCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC------hhhHHHHHHHH
Confidence 456666777777777766 45778899999999999987888888888888888877643 26889999999
Q ss_pred HHHHHHhchhhhhhhHHHHHHHHHHHhc
Q 001249 573 SLVGMAVGKDKFRDDAKQVMEVLMSLQG 600 (1114)
Q Consensus 573 ~~i~~~~~~~~f~~~~~~i~~~l~~~~~ 600 (1114)
..+.+.++.+.+.|.+.+++..+++.++
T Consensus 79 ~~fi~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 79 NCFIKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999989999999998888877543
No 164
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.86 E-value=0.099 Score=59.24 Aligned_cols=274 Identities=12% Similarity=0.107 Sum_probs=135.4
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhH
Q 001249 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 434 (1114)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 434 (1114)
...|++.+.++...++ .+-...+..+..+..+.+..+|..|+..|..++...+ ++++.+..++.+.|...++..
T Consensus 39 K~Laaq~I~kffk~FP--~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~QlL~tdd~~E 112 (556)
T PF05918_consen 39 KRLAAQFIPKFFKHFP--DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQLLQTDDPVE 112 (556)
T ss_dssp HHHHHHHHHHHHCC-G--GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHH
T ss_pred HHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHHHhcccHHH
Confidence 3456677777776664 5566677777778889999999999999988887643 578889999999999999988
Q ss_pred HHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccC---chHHHHHHHHHH
Q 001249 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP---YLDGIVSKLLVL 511 (1114)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~---~l~~il~~L~~~ 511 (1114)
+.++-.+|..+...-+. ..+..++..+... .. .+..+|+.+...|..-+..++.+.+.| .-..++..+.++
T Consensus 113 ~~~v~~sL~~ll~~d~k----~tL~~lf~~i~~~-~~-~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkv 186 (556)
T PF05918_consen 113 LDAVKNSLMSLLKQDPK----GTLTGLFSQIESS-KS-GDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKV 186 (556)
T ss_dssp HHHHHHHHHHHHHH-HH----HHHHHHHHHHH----H-S-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcH----HHHHHHHHHHHhc-cc-CchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHH
Confidence 88888888777654322 2233333333321 12 457799999999877776666555442 122345555566
Q ss_pred hhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHh--hccCccchhhhHHHHHHHHHHHHHhchhhhhhhHH
Q 001249 512 LQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV--NATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK 589 (1114)
Q Consensus 512 l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~--~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~ 589 (1114)
|++-...--...+..+..+-...+..-.+-...+++.+.+-.. ...+..+...-.+.+.|+..-..-..+ .....
T Consensus 187 L~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~---~v~Ss 263 (556)
T PF05918_consen 187 LQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSR---GVSSS 263 (556)
T ss_dssp CTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BT---TB--H
T ss_pred HHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcC---CCChH
Confidence 6653322112222333222110000111233445555544321 111111122222334444332111110 01123
Q ss_pred HHHHHHHH-HhcCCCCCCCchhhHHHHHHHHHHHHhcc-CCccchhhhhHHHHHhc
Q 001249 590 QVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQ-DFLPYMSVVMPPLLQSA 643 (1114)
Q Consensus 590 ~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~l~~i~~~ll~~~ 643 (1114)
.+++++.. +.-.--+-.+..+-..++.++.++...|. +...+++.++..+++.+
T Consensus 264 kfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ym 319 (556)
T PF05918_consen 264 KFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYM 319 (556)
T ss_dssp HHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhC
Confidence 34444333 21110011234567788888888887763 34566666667666666
No 165
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.85 E-value=0.013 Score=55.55 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=94.6
Q ss_pred hHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC-----CCChhHHHHHHHHHHHhHhh
Q 001249 375 VPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLSTD 448 (1114)
Q Consensus 375 ~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~ 448 (1114)
.|.+++.+...+++ .+|..|..++..+|.+..--+...+ .+..... +.+........ +...
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k--------~~~~~~~~~~~~~~~~~~~~~~l-----~~~~ 74 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK--------SIQKSLDSKSSENSNDESTDISL-----PMMG 74 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh--------cccccCCccccccccccchhhHH-----hhcc
Confidence 56677777776664 4699999999999988653322111 1111111 11122222222 1112
Q ss_pred hchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 001249 449 LGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALA 528 (1114)
Q Consensus 449 ~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~ 528 (1114)
..+...+-|...++..++..|+|..-..-+..+..++..++...+... .||++.++|.++..++..+...++..+.-++
T Consensus 75 ~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 75 ISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred CCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 222221345566788889999983334455678888888888777665 7999999999999999888899998888888
Q ss_pred HHHHh
Q 001249 529 SVADS 533 (1114)
Q Consensus 529 ~l~~~ 533 (1114)
.++..
T Consensus 154 ~lv~i 158 (160)
T PF11865_consen 154 DLVSI 158 (160)
T ss_pred HHHHH
Confidence 87754
No 166
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.85 E-value=0.035 Score=58.75 Aligned_cols=167 Identities=16% Similarity=0.207 Sum_probs=116.0
Q ss_pred CChhHHHHHH-HHHHHHHh-hcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhH---Hh--hhhhh
Q 001249 389 PEWQKHHAAL-IALAQIAE-GCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL---QN--QFHPQ 460 (1114)
Q Consensus 389 ~~~~~r~aal-~~l~~l~~-~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~--~~~~~ 460 (1114)
+.|+...+.. ..+.+++. ... ..+..+.+-++|.++..+.|.++.+|..++.++..+.+.++... .. ...+.
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v 166 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSV 166 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHH
Confidence 3677665333 55666555 433 46778999999999999999999999999999999998776543 11 22445
Q ss_pred hHHHHHhhcc--------CCCChhHHHHHHHHHHHhhhcCCc---ccccCchHHHH-HHHHHHhhc----CChhHHHHHH
Q 001249 461 VLPALAGAMD--------DFQNPRVQAHAASAVLNFSENCTP---EILTPYLDGIV-SKLLVLLQN----GKQMVQEGAL 524 (1114)
Q Consensus 461 il~~l~~~l~--------~~~~~~v~~~a~~al~~l~~~~~~---~~l~~~l~~il-~~L~~~l~~----~~~~v~~~al 524 (1114)
+.+.+..++. + ....+-..+..++..++..... ..-...+..++ +.++..+.. +.+.++...+
T Consensus 167 ~~~al~~~L~~LP~~tp~~-~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll 245 (282)
T PF10521_consen 167 FEDALFPCLYYLPPITPED-ESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLL 245 (282)
T ss_pred HHHHHHHHhhcCCCCCCch-hhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHH
Confidence 5556666654 3 4566777888888887654211 11112233333 324443332 2478889999
Q ss_pred HHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhc
Q 001249 525 TALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (1114)
Q Consensus 525 ~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~ 556 (1114)
..+..++..+|.....|+.++++.+.+.+.+.
T Consensus 246 ~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 246 QQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999988664
No 167
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0095 Score=64.65 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=113.7
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhc-CCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh
Q 001249 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1114)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1114)
.+.+++.+.+.-.|.++.++++.---|.+. ..++..++.. .+|.|..||.+|..+||-+|- .+ .
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~--~D-------~ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCC--DD-------R 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEe--cC-------c
Confidence 566777788888888888877654333221 2344455554 789999999999999998763 22 2
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhh
Q 001249 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ 539 (1114)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~ 539 (1114)
..++..++.|.+..++.||.....+|+-.|...+.. ..+..|-.+..+++..||..|+.+++.+.-...+.+.
T Consensus 585 ~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Ln 657 (926)
T COG5116 585 DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELN 657 (926)
T ss_pred chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccC
Confidence 455666666666578999999999999999877643 2344455556788899999999999999888888888
Q ss_pred hhHhhhhHHHHHHHhh
Q 001249 540 KYYDAVMPFLKAILVN 555 (1114)
Q Consensus 540 ~~~~~i~~~L~~~l~~ 555 (1114)
|-+..+...+.+.+.+
T Consensus 658 p~v~~I~k~f~~vI~~ 673 (926)
T COG5116 658 PNVKRIIKKFNRVIVD 673 (926)
T ss_pred hhHHHHHHHHHHHHhh
Confidence 8888888888887754
No 168
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.80 E-value=0.45 Score=52.89 Aligned_cols=241 Identities=16% Similarity=0.110 Sum_probs=144.2
Q ss_pred HHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHH
Q 001249 104 LKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK 183 (1114)
Q Consensus 104 i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 183 (1114)
....|+..|..+.+..++..++..+. . ..-+..+..++..+.++++.+|..+...|+.+-. .
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~---~-----~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~----------~ 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL---A-----QEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGG----------R 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh---c-----cCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc----------h
Confidence 34567777754456677664333322 1 1113348889999999999999999999985532 2
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch
Q 001249 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1114)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 263 (1114)
...+.+...+.+. ++.||..++.++...-. +. .+.+...+++.++.++..++.+++.+....
T Consensus 117 ~a~~~L~~~L~~~-~p~vR~aal~al~~r~~--------~~--------~~~L~~~L~d~d~~Vra~A~raLG~l~~~~- 178 (410)
T TIGR02270 117 QAEPWLEPLLAAS-EPPGRAIGLAALGAHRH--------DP--------GPALEAALTHEDALVRAAALRALGELPRRL- 178 (410)
T ss_pred HHHHHHHHHhcCC-ChHHHHHHHHHHHhhcc--------Ch--------HHHHHHHhcCCCHHHHHHHHHHHHhhcccc-
Confidence 3445677777886 89999988877664111 11 123344456889999999999999876421
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001249 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1114)
Q Consensus 264 ~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1114)
.++.+.... .+.++.||..|+..+..+.. +..++.+.......
T Consensus 179 ---------a~~~L~~al--~d~~~~VR~aA~~al~~lG~----------------~~A~~~l~~~~~~~---------- 221 (410)
T TIGR02270 179 ---------SESTLRLYL--RDSDPEVRFAALEAGLLAGS----------------RLAWGVCRRFQVLE---------- 221 (410)
T ss_pred ---------chHHHHHHH--cCCCHHHHHHHHHHHHHcCC----------------HhHHHHHHHHHhcc----------
Confidence 111122223 35688999999887754422 11122222211110
Q ss_pred CCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001249 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1114)
Q Consensus 344 ~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l 423 (1114)
. ... .......++. .|.+ ..++.+...++++. +|.+++.++|.+... ..++.+
T Consensus 222 -------g-~~~--~~~l~~~lal-~~~~----~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----------~av~~L 274 (410)
T TIGR02270 222 -------G-GPH--RQRLLVLLAV-AGGP----DAQAWLRELLQAAA--TRREALRAVGLVGDV----------EAAPWC 274 (410)
T ss_pred -------C-ccH--HHHHHHHHHh-CCch----hHHHHHHHHhcChh--hHHHHHHHHHHcCCc----------chHHHH
Confidence 0 011 1111112221 1323 45555666666544 899999999987653 356667
Q ss_pred HhcCCCCChhHHHHHHHHHHHhH
Q 001249 424 LNSFRDPHPRVRWAAINAIGQLS 446 (1114)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~ 446 (1114)
+..+.|+. ++..|..+++.+.
T Consensus 275 ~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 275 LEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHhcCcH--HHHHHHHHHHHhh
Confidence 77777654 8999999988875
No 169
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=2.5 Score=53.01 Aligned_cols=217 Identities=14% Similarity=0.117 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhh-hchhhhHHHHHHhHhhhhcC--CCCHHHHHHH-HHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCC
Q 001249 860 VGEILGTLIKTFK-AAFLPFFDELSSYLTPMWGK--DKTAEERRIA-ICIFDDVAEQCREAALKYYETYLPFLLEACNDE 935 (1114)
Q Consensus 860 ~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~--~~~~~~r~~a-~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~ 935 (1114)
+-++.-++..... ..|.|+|..+..|-.+-+.. +....+|..+ ++....+.+.+...+.||+..++.+....+..-
T Consensus 1369 V~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~L~k~ 1448 (1621)
T KOG1837|consen 1369 VQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLERLISFYHFADYLQESLKSIVTPYFGYLLEPRVILLKKI 1448 (1621)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 3444444444444 45889888877775432211 1223445554 567777788888888999998887765555321
Q ss_pred Ch------------hHHhhhhHHHHHHHhhc--------C-CCch--HH----HHHHHHHHHHhhcCCCCCChhhhhhHH
Q 001249 936 NQ------------DVRQAAVYGLGVCAEFG--------G-SVVK--PL----VGEALSRLNVVIRHPNALQPENLMAYD 988 (1114)
Q Consensus 936 ~~------------~vr~~a~~~lg~l~~~~--------~-~~~~--~~----~~~~l~~L~~~l~~~~~~~~~~~~~~~ 988 (1114)
+. ..| -.+..|.++.++ . ..|. +. ...+...+.+..-.+ .....+-+
T Consensus 1449 n~s~~~~~~~~~~~~~r--~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~----~~~~~v~~ 1522 (1621)
T KOG1837|consen 1449 NASKHRWFWLLPVNQSR--KPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEF----YASDIVSK 1522 (1621)
T ss_pred hhhhhhhhhhhcccccc--hhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccc----hhhhHHHH
Confidence 11 222 222233333322 2 1111 11 112233333322111 11244666
Q ss_pred HHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCCC
Q 001249 989 NAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKD 1068 (1114)
Q Consensus 989 na~~al~~l~~~~~~~~~~~~~~~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~~~~l~~~~ 1068 (1114)
-++.|++++....++. +...+...+....- +....+-.++..+..++..-+..++. ++|++++++++.+.
T Consensus 1523 ~li~~i~~~~~a~~~d--~~pl~~k~l~~trs-s~~~~r~~ai~~~~~l~~~lge~~~~----lL~q~iPfLaEL~E--- 1592 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDD--LKPLNQKILKKTRS-SSRKARYLAIIQVKLLYTKLGENVIV----LLPQSIPFLAELME--- 1592 (1621)
T ss_pred HHHHHHHhhccCChhh--hHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHhcchhHH----hhhhhhHHHHHHHh---
Confidence 7788888776655543 44444444443311 11233334455555566666666665 69999999999994
Q ss_pred CCCHHHHHHHHHHHHHHHhhCChh
Q 001249 1069 LATEQTLSRIVNLLKQLQQTLPPA 1092 (1114)
Q Consensus 1069 ~~~~~~~~~~~~~l~~~~~~~~~~ 1092 (1114)
+++.++....+.+++++...+|+.
T Consensus 1593 D~~~~Ve~~~q~li~q~e~~lGE~ 1616 (1621)
T KOG1837|consen 1593 DEDDEVECLCQKLIRQLEEVLGEP 1616 (1621)
T ss_pred hhHHHHHHHHHHHHHHHHHHhchh
Confidence 345678888888888888888765
No 170
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.02 Score=64.50 Aligned_cols=155 Identities=21% Similarity=0.221 Sum_probs=110.0
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh-cCCCCChhHHHHHHHHHHHhHhhhchhHHhhh
Q 001249 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1114)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 457 (1114)
-+++.+++.+.++-.|.++.+.++.---|... ...+..++. ..+|.|..||.+|..+||-++-.-
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d-------- 586 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD-------- 586 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecC--------
Confidence 35677788888999999988877643333221 122333333 378999999999999999876321
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001249 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1114)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~ 537 (1114)
+..+|..++.|.+.-++.||..+..+|+-.|...+. ..-+..|-.+..++...||..|+-+++.+.-...+.
T Consensus 587 -p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 587 -PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred -hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccc
Confidence 234555666666656899999999999999987663 233445555666888999999999999887666666
Q ss_pred hhhhHhhhhHHHHHHHhh
Q 001249 538 FQKYYDAVMPFLKAILVN 555 (1114)
Q Consensus 538 ~~~~~~~i~~~L~~~l~~ 555 (1114)
..|-+..+-..+.+.+.+
T Consensus 659 ~~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 659 LCPKVNGFRKQLEKVIND 676 (929)
T ss_pred cCchHHHHHHHHHHHhhh
Confidence 677777777777777755
No 171
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.72 E-value=1.1 Score=47.92 Aligned_cols=353 Identities=14% Similarity=0.114 Sum_probs=179.4
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCC--CCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHh
Q 001249 56 SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD--SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (1114)
Q Consensus 56 ~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~--~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~ 133 (1114)
.++..++.+++....++.-++...++--++..+. ...+.......+...-...+..|.. .+.-+-+..+.+++.++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r-~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNR-QDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhc-CChHHHHHHHHHHHHHHH
Confidence 4567788888876667777888888888877641 0011111111222222345566665 577777778889998887
Q ss_pred cccC---CCCchhhHHHHHHhhcC-CChhhHHHHHHHHHHhhhhhh--hhh--hhhHHHHHHHHHHhhcCCCChHHHHHH
Q 001249 134 NILP---ENGWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIG--DTL--TPHLKHLHAVFLNCLTNSNNPDVKIAA 205 (1114)
Q Consensus 134 ~~~~---~~~w~~ll~~l~~~~~~-~~~~~r~~al~~l~~l~~~~~--~~~--~~~~~~l~~~l~~~l~~~~~~~vr~~a 205 (1114)
.-.- .+...=....+...+++ .+...+..+.++|..+...-. ..+ ..-...+++.+. +...+.+++...
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~---s~~~~~QlQYqs 220 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA---STKCGFQLQYQS 220 (442)
T ss_pred hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh---ccCcchhHHHHH
Confidence 4211 11233345666666665 456677788888888775311 111 112333444443 322366777777
Q ss_pred HHHHHHHHHhcCCcch-HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH------HHHHHHHHHHHHH
Q 001249 206 LNAVINFIQCLTSSAD-RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF------LRRQLVDVVGSML 278 (1114)
Q Consensus 206 ~~~l~~l~~~~~~~~~-~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~~~~l~~~ll 278 (1114)
+-|+-.+. +..... .-..-.+++.+.+.+.... .+.+...++.++..+++..+.. ..+.+..=++..+
T Consensus 221 ifciWlLt--Fn~~~ae~~~~~~li~~L~~Ivk~~~---KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l 295 (442)
T KOG2759|consen 221 IFCIWLLT--FNPHAAEKLKRFDLIQDLSDIVKEST---KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTL 295 (442)
T ss_pred HHHHHHhh--cCHHHHHHHhhccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHH
Confidence 76664332 110000 0011245566666665533 5677777888888888766421 1111111122233
Q ss_pred HHhccCC-cchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhh
Q 001249 279 QIAEAES-LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV 357 (1114)
Q Consensus 279 ~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~ 357 (1114)
+.+.... .|++++ ..++++..-.+..-+ ....+..|...+..-.+. |...-.+ + .-|+-
T Consensus 296 ~~L~~rkysDEDL~-~di~~L~e~L~~svq---~LsSFDeY~sEl~sG~L~----------WSP~Hk~-e-----~FW~e 355 (442)
T KOG2759|consen 296 QSLEERKYSDEDLV-DDIEFLTEKLKNSVQ---DLSSFDEYKSELRSGRLE----------WSPVHKS-E-----KFWRE 355 (442)
T ss_pred HHHHhcCCCcHHHH-HHHHHHHHHHHHHHH---hhccHHHHHHHHHhCCcC----------CCccccc-c-----chHHH
Confidence 3333222 344443 455666654442100 000111233333222222 2211000 0 01211
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHH--HHHHHHhcCCCCChhH
Q 001249 358 GQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQ--VLSMVLNSFRDPHPRV 434 (1114)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~d~~~~v 434 (1114)
-.+++- +.=. .++..+..+++ +.++..-..|++=+|..++..|+... .+.+ --..+++.+++++|+|
T Consensus 356 ---Na~rln-----enny-ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~Llnh~d~~V 425 (442)
T KOG2759|consen 356 ---NADRLN-----ENNY-ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMNLLNHEDPEV 425 (442)
T ss_pred ---hHHHHh-----hccH-HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHHHhcCCCchH
Confidence 111111 1111 12333333443 44577778888889988887664221 1111 2356788899999999
Q ss_pred HHHHHHHHHHhHh
Q 001249 435 RWAAINAIGQLST 447 (1114)
Q Consensus 435 r~~a~~~l~~l~~ 447 (1114)
|..|+.|+..+..
T Consensus 426 ry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 426 RYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877653
No 172
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.60 E-value=0.028 Score=48.47 Aligned_cols=98 Identities=15% Similarity=0.245 Sum_probs=77.9
Q ss_pred cccCchHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHH
Q 001249 496 ILTPYLDGIVSKLLVLLQNGK----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMEC 571 (1114)
Q Consensus 496 ~l~~~l~~il~~L~~~l~~~~----~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~ 571 (1114)
.+.+++-.++..+...+.+.. ..-|..++.+++.+.+.+++....+.++++-.|...+.. ..+|..+++|
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~------~eL~~~al~~ 77 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI------PELRSLALRC 77 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHH
Confidence 345666677777777776654 355899999999999998988888888888888887743 3489999999
Q ss_pred HHHHHHHhchhhhhhhHHHHHHHHHHHh
Q 001249 572 ISLVGMAVGKDKFRDDAKQVMEVLMSLQ 599 (1114)
Q Consensus 572 l~~i~~~~~~~~f~~~~~~i~~~l~~~~ 599 (1114)
+..+.+.+..+...|.+.+++..+.+.+
T Consensus 78 W~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 78 WHVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999998888888888877776543
No 173
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.57 E-value=1.6 Score=50.71 Aligned_cols=175 Identities=13% Similarity=0.168 Sum_probs=117.6
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHH--H-----hhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcC
Q 001249 355 YSVGQECLDRLAIALGGNTIVPVASEQLP--A-----YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF 427 (1114)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~--~-----~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 427 (1114)
...|...|.++...+....++..++.... . ...-.++..|.-.+..|..-... ....+.++..+..++
T Consensus 254 ~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-----a~~~~~~~~i~~~~l 328 (501)
T PF13001_consen 254 SDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-----ATSFPNILQIVFDGL 328 (501)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-----HhCCccHHHHHhccc
Confidence 34566677777655554455555555444 1 00113466665555444432211 235678888999999
Q ss_pred CCC--ChhHHHHHHHHH---HHhHhhhchhHHhhhhhhhHHHHHhhcc-------CCCChhHHHHHHHHHHHhhhcCCcc
Q 001249 428 RDP--HPRVRWAAINAI---GQLSTDLGPDLQNQFHPQVLPALAGAMD-------DFQNPRVQAHAASAVLNFSENCTPE 495 (1114)
Q Consensus 428 ~d~--~~~vr~~a~~~l---~~l~~~~~~~~~~~~~~~il~~l~~~l~-------~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1114)
.++ +.++|..++..+ ......+++......-+.++..+.+.++ +..+...|..+..+|+.++...+.-
T Consensus 329 ~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l 408 (501)
T PF13001_consen 329 YSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSL 408 (501)
T ss_pred cCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccc
Confidence 888 889999999999 8888877776645555555555555563 1135578899999999999887642
Q ss_pred cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001249 496 ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1114)
Q Consensus 496 ~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~ 536 (1114)
+..- -.++..|+..+.+..+++|..+-.|+++++.+...
T Consensus 409 -~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 409 -FSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred -cccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 2222 35678888888889999999999999999988764
No 174
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=2.4 Score=49.79 Aligned_cols=374 Identities=14% Similarity=0.135 Sum_probs=200.3
Q ss_pred hhHHHHHHHhhcc-CccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHH
Q 001249 545 VMPFLKAILVNAT-DKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKC 623 (1114)
Q Consensus 545 i~~~L~~~l~~~~-~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 623 (1114)
+...+-+.+...+ +++....-..++-++..++...| +...+.++..++......-+.+ +-.+...+...+|..+.-
T Consensus 463 L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~-~t~~~~i~rl~~~~asik~S~~--n~ql~~Tss~~igs~s~~ 539 (982)
T KOG2022|consen 463 LIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLG-ETESTWIPRLFETSASIKLSAP--NPQLLSTSSDLIGSLSNW 539 (982)
T ss_pred HHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcC-cchhHHHHHHHHhccccccccC--ChhHHHHHHHHHHHHHHH
Confidence 3334444444333 33333344445666777888888 5566666676666555433322 122455666778888888
Q ss_pred hccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhh
Q 001249 624 LGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK 703 (1114)
Q Consensus 624 ~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~ 703 (1114)
+++. .-|++..+|.+++.+... ++-+.|...+..+++.|+
T Consensus 540 l~e~-P~~ln~sl~~L~~~Lh~s---------------------------------------k~s~q~i~tl~tlC~~C~ 579 (982)
T KOG2022|consen 540 LGEH-PMYLNPSLPLLFQGLHNS---------------------------------------KESEQAISTLKTLCETCP 579 (982)
T ss_pred HhcC-CcccCchHHHHHHHhcCc---------------------------------------hHHHHHHHHHHHHHHhhh
Confidence 8765 346777778888887320 112345556889999999
Q ss_pred hhccccHHHHHHHhhhccccc-CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHcc----
Q 001249 704 EGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHK---- 778 (1114)
Q Consensus 704 ~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---- 778 (1114)
..+.||..+++..+-..+... .....|.....++|.++.+.. ++...++...++..++..++.
T Consensus 580 ~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~------------pEe~~kyl~~lin~il~qle~~l~~ 647 (982)
T KOG2022|consen 580 ESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK------------PEEIPKYLMKLINPILSQLEINLAP 647 (982)
T ss_pred hhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc------------HHhHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999988876665432 356789999999999988753 233344444444444444432
Q ss_pred C-CcHHHH---HHHHHHHHHHHHHhCC-C--------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCC
Q 001249 779 E-PDTEIC---ASMLDSLNECIQISGP-L--------------LDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFD 839 (1114)
Q Consensus 779 ~-~~~~~~---~~~l~~l~~~l~~~~~-~--------------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d 839 (1114)
+ ++.+.+ ...+.++..+...+.. . .....+..+..+++.++.+...-. .
T Consensus 648 ~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~------~------ 715 (982)
T KOG2022|consen 648 GIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMW------L------ 715 (982)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHH------h------
Confidence 1 122221 2234444455444321 0 000123345555555555543200 0
Q ss_pred hHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhch-hhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHH-HHhHhhhhh
Q 001249 840 AEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAF-LPFFDELSSYLTPMWGKDKTAEERRIAICIFDD-VAEQCREAA 917 (1114)
Q Consensus 840 ~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~-~~~~~~~~~ 917 (1114)
.+.++.++++...+.=.+..++.| .|++..+++++..+.....-...--.+.+++.. -.+.+++.+
T Consensus 716 ------------~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv 783 (982)
T KOG2022|consen 716 ------------GLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCKPLV 783 (982)
T ss_pred ------------cchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhccccccccH
Confidence 113345555555544455666668 788888999988754211111111111111111 112233322
Q ss_pred hhhhHhHHHHHHHhcc----CCChhHHhhhhHHHHHHHhhcCCCchH---HHHHHHH-HHHHhhcCCCCCChhhhhhHHH
Q 001249 918 LKYYETYLPFLLEACN----DENQDVRQAAVYGLGVCAEFGGSVVKP---LVGEALS-RLNVVIRHPNALQPENLMAYDN 989 (1114)
Q Consensus 918 ~~~~~~i~~~ll~~l~----~~~~~vr~~a~~~lg~l~~~~~~~~~~---~~~~~l~-~L~~~l~~~~~~~~~~~~~~~n 989 (1114)
...+...+...+..+. .++++.-..-.+.+..+.+..+..+.+ .+..++. .-.+.+..+. .....+
T Consensus 784 ~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE------~~~i~a 857 (982)
T KOG2022|consen 784 GQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPE------PTTIRA 857 (982)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCc------cHHHHH
Confidence 2222233333333333 356777777888888888888765443 3333333 5556666653 233344
Q ss_pred HHHHHHHHHhhcCC
Q 001249 990 AVSALGKICQFHRD 1003 (1114)
Q Consensus 990 a~~al~~l~~~~~~ 1003 (1114)
++.=+..++.....
T Consensus 858 a~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 858 ASQFLTALATYATS 871 (982)
T ss_pred HHHHHHHHHhhccc
Confidence 55555555555443
No 175
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=96.56 E-value=1.8 Score=48.13 Aligned_cols=295 Identities=13% Similarity=0.115 Sum_probs=156.9
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHccc--hHHHHH
Q 001249 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-------GNEATAQEALELLIELAGTE--PRFLRR 268 (1114)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~-------~~~~~~~~~~~~l~~l~~~~--~~~~~~ 268 (1114)
+..-|..|-..+...+....+..+...+.+.++.+++.+..-+.. .+.....+|+++++.+.... ...+..
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~ 85 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSD 85 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCCh
Confidence 455677777777777776554445566777788888877765554 25567788999998776432 111111
Q ss_pred H-HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCc
Q 001249 269 Q-LVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDE 347 (1114)
Q Consensus 269 ~-~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~e 347 (1114)
. ...++..++..+.++..+..+...++.++. .. ...+... ....+..++..+.
T Consensus 86 d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls---~Q-~f~~~~~--~~~~~~~l~~~l~-------------------- 139 (372)
T PF12231_consen 86 DFASFIIDHSIESLQNPNSPKSICTHYLWCLS---DQ-KFSPKIM--TSDRVERLLAALH-------------------- 139 (372)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---cC-CCCCccc--chhhHHHHHHHHH--------------------
Confidence 1 123555555555544444444444433332 10 0011000 0001111111111
Q ss_pred cccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcC
Q 001249 348 DAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF 427 (1114)
Q Consensus 348 d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 427 (1114)
.+-..++ .-..-...+.++..+....+..|..+...-++.++..+
T Consensus 140 ----------------~i~~~~~-------------------s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l 184 (372)
T PF12231_consen 140 ----------------NIKNRFP-------------------SKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDL 184 (372)
T ss_pred ----------------HhhccCC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11222334455666666777777778777888888888
Q ss_pred CCCChhHHHHHHHHHHHhHhhhchhHH---------------hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC
Q 001249 428 RDPHPRVRWAAINAIGQLSTDLGPDLQ---------------NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1114)
Q Consensus 428 ~d~~~~vr~~a~~~l~~l~~~~~~~~~---------------~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1114)
-+....+|..|..++..+...+++... ..+.+.+.+.+...+.+..+...-...-.++..++..-
T Consensus 185 ~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~ 264 (372)
T PF12231_consen 185 LSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSS 264 (372)
T ss_pred hhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCc
Confidence 888888998877766666655544210 01112222333333333111111122223333333221
Q ss_pred CcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh---hhhhHhhhhHHHHHHHh
Q 001249 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH---FQKYYDAVMPFLKAILV 554 (1114)
Q Consensus 493 ~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~---~~~~~~~i~~~L~~~l~ 554 (1114)
. -.--+++...+.....+++++++.+|..|+.+...++.....+ ..+.+.-++.++...+.
T Consensus 265 ~-~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~ 328 (372)
T PF12231_consen 265 R-LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLR 328 (372)
T ss_pred h-hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhC
Confidence 1 1123678888888888999999999999999999999865532 12344444444444443
No 176
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.49 E-value=1.9 Score=47.80 Aligned_cols=352 Identities=14% Similarity=0.076 Sum_probs=160.6
Q ss_pred hhhHHHHHHhhcC-CChhhHHHHHHHHHHhhhhhhhh---hhhhH---HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 001249 142 PELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDT---LTPHL---KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (1114)
Q Consensus 142 ~~ll~~l~~~~~~-~~~~~r~~al~~l~~l~~~~~~~---~~~~~---~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 214 (1114)
+.....++.+++. ...+..+..+..+..++...+.. |.+.. +.....|...|+.+ +.-+...|+..+..++.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~-d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQ-DQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCC-chhHHHHHHHHHHHHHh
Confidence 4444455555442 34566666666677666654432 11110 12334455567775 78899999999999987
Q ss_pred hcCCcchHhHHHhhHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHHHHhccCCcchhHH
Q 001249 215 CLTSSADRDRFQDLLPLMMRTLTESLNNG-NEATAQEALELLIELAGTEPRF--LRRQLVDVVGSMLQIAEAESLEEGTR 291 (1114)
Q Consensus 215 ~~~~~~~~~~~~~l~p~ll~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~l~~~ll~~~~~~~~~~~vr 291 (1114)
+-... .....++.+++.+...+.+. +.+....++.++..+....... |.. ...++.+..++.....+-.+.
T Consensus 131 ~~~~~----~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 131 FGLAK----MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred cCccc----cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHHHHHHHhhccccHHHH
Confidence 53211 11223344555555555433 3556667788888887654322 221 124455555543322233333
Q ss_pred HHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcC-
Q 001249 292 HLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG- 370 (1114)
Q Consensus 292 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~- 370 (1114)
..++-++- +... .+........ ..+++.+...+.....+ ..-+++..++..+...-.
T Consensus 205 Y~~ll~lW-lLSF---~~~~~~~~~~--~~~i~~l~~i~k~s~KE----------------KvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 205 YQSIFCIW-LLTF---NPHAAEVLKR--LSLIQDLSDILKESTKE----------------KVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HHHHHHHH-HHhc---cHHHHHhhcc--ccHHHHHHHHHHhhhhH----------------HHHHHHHHHHHHHhhcccc
Confidence 33332222 2221 1111111100 23455555444332100 011222223322222100
Q ss_pred ---CCcchHHHH----HHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHH--hHHHHHHHHHhcCCCCChhHHHHHHHH
Q 001249 371 ---GNTIVPVAS----EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVK--NLEQVLSMVLNSFRDPHPRVRWAAINA 441 (1114)
Q Consensus 371 ---~~~~~~~l~----~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~--~l~~i~~~l~~~l~d~~~~vr~~a~~~ 441 (1114)
.....+.++ +.+.+.++...|..-+ -..-+..+.+...+.+.. .++....-+..+.-+-+|.-+...+|.
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~Ded-L~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDED-LTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence 001111111 1112233333332211 111222222222211111 122222222222222244444444443
Q ss_pred HHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc-cccCchHHHHHHHHHHhhcCChhHH
Q 001249 442 IGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-ILTPYLDGIVSKLLVLLQNGKQMVQ 520 (1114)
Q Consensus 442 l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~-~l~~~l~~il~~L~~~l~~~~~~v~ 520 (1114)
=.. ..+ .+.--.++..|.+.|..+.++.+..-||.=++.|+...+.. .+..-+. .=..++.++++++++||
T Consensus 342 EN~------~kf-~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr 413 (429)
T cd00256 342 ENA------DRL-NEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVR 413 (429)
T ss_pred HHH------HHH-HhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHH
Confidence 211 111 11223566677777754356777888999999999887421 1111111 23457788899999999
Q ss_pred HHHHHHHHHHH
Q 001249 521 EGALTALASVA 531 (1114)
Q Consensus 521 ~~al~~l~~l~ 531 (1114)
..|+.|++.+.
T Consensus 414 ~eAL~avQklm 424 (429)
T cd00256 414 YEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 177
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.47 E-value=1.6 Score=47.08 Aligned_cols=188 Identities=12% Similarity=0.156 Sum_probs=114.5
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHhcccCC----------CCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhh--hh
Q 001249 108 LLQSIQLESAKSISKKLCDTVSELASNILPE----------NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY--IG 175 (1114)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~----------~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~--~~ 175 (1114)
|+..|.. -+-+.|+.++.+.+.+.+..... ..||+++..|.....+++...- +-.+|...+++ +.
T Consensus 81 Li~~L~~-L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~--~g~mlRec~k~e~l~ 157 (335)
T PF08569_consen 81 LIRNLPK-LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN--CGDMLRECIKHESLA 157 (335)
T ss_dssp HHHTGGG-S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH--HHHHHHHHTTSHHHH
T ss_pred HHHHhhh-CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch--HHHHHHHHHhhHHHH
Confidence 3444443 45566666666666666654332 3578999999998887765433 22334433332 11
Q ss_pred hhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 001249 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1114)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l 255 (1114)
..+-. ...+-.|.+....+ +-+|-..|+.++..++..-. ....+-+......+......++.+++--.+..++..|
T Consensus 158 ~~iL~--~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk-~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 158 KIILY--SECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHK-KLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHHHT--SGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHHhC--cHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 11100 11222244566675 88998899999988776421 1123344556667777777888888999999999999
Q ss_pred HHHHcc--chHHHHHHHH--HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHh
Q 001249 256 IELAGT--EPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1114)
Q Consensus 256 ~~l~~~--~~~~~~~~~~--~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1114)
+++... ....+..|+. .-+..++..+. +.+..++..|+.++.-++.+
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~--d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLLR--DKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHhc--CcchhhhHHHHHHHHHHHhC
Confidence 998853 3456667664 44556666665 34688999999999988874
No 178
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=96.42 E-value=1.7 Score=46.46 Aligned_cols=153 Identities=13% Similarity=0.115 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcH---HHHH-HhHHHHHHHHHh-cCCCCChhHHHHHHHHHHHhHhhhc
Q 001249 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA---KVMV-KNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLG 450 (1114)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~---~~~~-~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1114)
|.++.++..++.|.+....-++..++|.++..-. ..+. +.+..++..+.+ --.|.|.+++.+++.+|..+.--..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 4588888999999999999999999999997533 2222 345566666665 4557788889999999998874332
Q ss_pred hhHHhhh-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc--ccccCchHHHHHHHHHHhhcCChh-HHHHHHHH
Q 001249 451 PDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPYLDGIVSKLLVLLQNGKQM-VQEGALTA 526 (1114)
Q Consensus 451 ~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~l~~~l~~il~~L~~~l~~~~~~-v~~~al~~ 526 (1114)
.. ..+ -..+...++..++. ..|.|+-.-...++-+....+. ..+ ---+.+++.|..--++++.. +-..+...
T Consensus 394 nk--a~~~~aGvteaIL~~lk~-~~ppv~fkllgTlrM~~d~qe~~a~eL-~kn~~l~ekLv~Wsks~D~aGv~gESnRl 469 (604)
T KOG4500|consen 394 NK--AHFAPAGVTEAILLQLKL-ASPPVTFKLLGTLRMIRDSQEYIACEL-AKNPELFEKLVDWSKSPDFAGVAGESNRL 469 (604)
T ss_pred ch--hhccccchHHHHHHHHHh-cCCcchHHHHHHHHHHHhchHHHHHHH-hcCHHHHHHHHHhhhCCccchhhhhhhHH
Confidence 21 122 23466777777777 6677776666666555443220 000 01134455555544444432 43344444
Q ss_pred HHHHHH
Q 001249 527 LASVAD 532 (1114)
Q Consensus 527 l~~l~~ 532 (1114)
+..+++
T Consensus 470 l~~lIk 475 (604)
T KOG4500|consen 470 LLGLIK 475 (604)
T ss_pred HHHHHH
Confidence 444443
No 179
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.41 E-value=0.35 Score=51.94 Aligned_cols=167 Identities=19% Similarity=0.220 Sum_probs=103.9
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh--
Q 001249 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-- 457 (1114)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-- 457 (1114)
.++...+.+.+..+|+.|+.++|-.+--..+.-.++++-++. .+...++.||..|+.++..+....+.......
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~----~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQ----ALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 445577889999999999999998876544433444444444 44445889999999999998887765442222
Q ss_pred ------hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhc----CChhHHHHHHHHH
Q 001249 458 ------HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN----GKQMVQEGALTAL 527 (1114)
Q Consensus 458 ------~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~----~~~~v~~~al~~l 527 (1114)
...++..+.+.+.+ .++.+|..|+.++..+.-.-. +.+ -+.++..|+-..=+ .+..+|...-..+
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~~~---i~~-~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLSGR---ISD-PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred cCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCC---CCc-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 24688888899988 688999999999998765432 111 24455555443322 2344444433344
Q ss_pred HHHHHhhhhhhhhhHhhhhHHHHHHHhh
Q 001249 528 ASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1114)
Q Consensus 528 ~~l~~~~~~~~~~~~~~i~~~L~~~l~~ 555 (1114)
...+.....+-.-....++|.+...+..
T Consensus 181 p~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 181 PVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 4444333333233344455555554443
No 180
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.33 Score=54.82 Aligned_cols=219 Identities=12% Similarity=0.159 Sum_probs=129.2
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhh----chhhhHHHHHHHHHHHHHhcccCCCCchh
Q 001249 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL----ESAKSISKKLCDTVSELASNILPENGWPE 143 (1114)
Q Consensus 68 ~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~----e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ 143 (1114)
-++.....++.++++. |+..+-+.+++|-+-.++.+.. -+...+....-.+++.++..--....-.+
T Consensus 99 l~ks~~~~~geI~frA---------Wkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVee 169 (1005)
T KOG1949|consen 99 LQKSLMVYIGEIYFRA---------WKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEE 169 (1005)
T ss_pred ccHHHHHHHhHHHHHH---------HHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4566777888888886 8766656666666666665543 12334444444566666543211123334
Q ss_pred hH-----HHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhh-----hhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 001249 144 LL-----PFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL-----TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFI 213 (1114)
Q Consensus 144 ll-----~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~-----~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 213 (1114)
++ |-+.+.++.++.++|..|+.++-.+..-.+++. ...++.=...+...|.|+ -+.||..|+.-+..++
T Consensus 170 ml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~ 248 (1005)
T KOG1949|consen 170 MLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDP-YPMVRSTAILGVCKIT 248 (1005)
T ss_pred HHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence 33 666778888999999999988877765444332 122333334566778887 8999999988888777
Q ss_pred HhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHH
Q 001249 214 QCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHL 293 (1114)
Q Consensus 214 ~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~ 293 (1114)
..+-.-.....+.+++..+... ...+...++|...++++..++..... -+.+..+++.+-..+ .|..+.||.+
T Consensus 249 s~fWe~iP~~i~~~ll~kI~d~---~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l--~D~se~VRvA 321 (1005)
T KOG1949|consen 249 SKFWEMIPPTILIDLLKKITDE---LAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSL--HDNSEKVRVA 321 (1005)
T ss_pred HHHHHHcCHHHHHHHHHHHHHH---hhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhh--hccchhHHHH
Confidence 6531100112222222222222 22345568899999999888764321 122333333222223 2457889999
Q ss_pred HHHHHHHHHH
Q 001249 294 AIEFVITLAE 303 (1114)
Q Consensus 294 a~~~l~~l~~ 303 (1114)
+.+++..+-.
T Consensus 322 ~vd~ll~ik~ 331 (1005)
T KOG1949|consen 322 FVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHh
Confidence 9888876644
No 181
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.22 E-value=0.092 Score=59.67 Aligned_cols=254 Identities=13% Similarity=0.122 Sum_probs=159.4
Q ss_pred CCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHH
Q 001249 242 NGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINR 321 (1114)
Q Consensus 242 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 321 (1114)
-.+.+.+..-+..|.+.++..++.+.. ..+++.++..+.-.+...++ +..+..+.+. -.-.+|-..
T Consensus 265 lks~~eK~~Ff~~L~~~l~~~pe~i~~--~kvlp~Ll~~~~~g~a~~~~----ltpl~k~~k~--------ld~~eyq~~ 330 (690)
T KOG1243|consen 265 LKSVEEKQKFFSGLIDRLDNFPEEIIA--SKVLPILLAALEFGDAASDF----LTPLFKLGKD--------LDEEEYQVR 330 (690)
T ss_pred cCcHHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhhccccchhh----hhHHHHhhhh--------ccccccccc
Confidence 446667777777776655555554432 24445444433221111111 1222222221 011236667
Q ss_pred HHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHH
Q 001249 322 LFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIAL 401 (1114)
Q Consensus 322 l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l 401 (1114)
++|.+++++...+. ..+-.-.+-++.+..++.++.+...++|.+...+.+.+.-.|+-.+.++
T Consensus 331 i~p~l~kLF~~~Dr-----------------~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm 393 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDR-----------------QIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSM 393 (690)
T ss_pred hhhhHHHHhcCcch-----------------HHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHH
Confidence 78888877654321 1232333444555556655556677888888999999999999999999
Q ss_pred HHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHH
Q 001249 402 AQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (1114)
Q Consensus 402 ~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a 481 (1114)
..++....+. ..=..++..+-..-.|.++.+|.....|+|.++.++.+... -..+.......+.| +-..-|.++
T Consensus 394 ~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R---~~vL~~aftralkd-pf~paR~a~ 467 (690)
T KOG1243|consen 394 AVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVR---KRVLASAFTRALKD-PFVPARKAG 467 (690)
T ss_pred HHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhh---ccccchhhhhhhcC-CCCCchhhh
Confidence 9998766542 12235677777777799999999999999999988766442 22333344456888 777778888
Q ss_pred HHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 482 ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 482 ~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
..++....+..... ..-..|++.+....-+++..+|..+..++........
T Consensus 468 v~~l~at~~~~~~~---~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 468 VLALAATQEYFDQS---EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hHHHhhcccccchh---hhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 88877766655432 3345667777777778888899888887766554433
No 182
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.21 E-value=0.043 Score=47.38 Aligned_cols=99 Identities=23% Similarity=0.365 Sum_probs=77.9
Q ss_pred HHHHHhHHHHHHHHHhcCCCCC---h-hHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHH
Q 001249 410 KVMVKNLEQVLSMVLNSFRDPH---P-RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (1114)
Q Consensus 410 ~~~~~~l~~i~~~l~~~l~d~~---~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al 485 (1114)
+.+.+++=.++..+-..+.|.+ | .-|..+..+++.+.+..++.+ ..+.++++..|..+++. ++.|..|+.+.
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-~~a~pQI~acL~saL~~---~eL~~~al~~W 78 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-SSALPQIMACLQSALEI---PELRSLALRCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCc---hhHHHHHHHHH
Confidence 3556777777888888888776 2 238899999999999877777 67788888888888865 67999999999
Q ss_pred HHhhhcCCcccccCchHHHHHHHHHHh
Q 001249 486 LNFSENCTPEILTPYLDGIVSKLLVLL 512 (1114)
Q Consensus 486 ~~l~~~~~~~~l~~~l~~il~~L~~~l 512 (1114)
..|+..++.+.+.|.++.++..+.+..
T Consensus 79 ~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 79 HVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 999999987777777777766666543
No 183
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.1 Score=55.38 Aligned_cols=133 Identities=16% Similarity=0.228 Sum_probs=110.3
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccC
Q 001249 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (1114)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~ 499 (1114)
+.-++..+++.|..||..|...+..+....+... ..+...+++.+...+.| .+..||.....++..++....++.+.|
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D-~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILD-DDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcC-ccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 3445567899999999999999999887733333 45777888888888888 889999999999999887776666899
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHh
Q 001249 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1114)
Q Consensus 500 ~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~ 554 (1114)
+..-+++.+...+.+..+.+|..++..+..++..+++.+..+...+++.....+.
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988877766666666655544
No 184
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.19 E-value=5.8 Score=50.26 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=95.3
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHH
Q 001249 360 ECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (1114)
Q Consensus 360 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 439 (1114)
+.+-.+-...+ ..+-.++|.+...+.+.+-..|.-|...+|.+.......+.+..+.++...+..+.|.++.||..+.
T Consensus 244 e~i~~L~~~~p--~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v 321 (1266)
T KOG1525|consen 244 ELILELWRIAP--QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECV 321 (1266)
T ss_pred HHHHHHHHhhH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHH
Confidence 34444443332 4566688888888999999999999999999987666555577889999999999999999999988
Q ss_pred HHHHHhHhhhch----------------------------------hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHH
Q 001249 440 NAIGQLSTDLGP----------------------------------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (1114)
Q Consensus 440 ~~l~~l~~~~~~----------------------------------~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al 485 (1114)
.+..++.-..+. .+.-.+.+.++..+.+.+.| ..++||..|+..|
T Consensus 322 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rD-Kk~~VR~~Am~~L 400 (1266)
T KOG1525|consen 322 ESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRD-KKIKVRKQAMNGL 400 (1266)
T ss_pred HHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhh-hhHHHHHHHHHHH
Confidence 776654422110 01112334477777788889 8999999999999
Q ss_pred HHhhhc
Q 001249 486 LNFSEN 491 (1114)
Q Consensus 486 ~~l~~~ 491 (1114)
..+-.+
T Consensus 401 aqlYk~ 406 (1266)
T KOG1525|consen 401 AQLYKN 406 (1266)
T ss_pred HHHHHH
Confidence 888764
No 185
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.19 E-value=3.4 Score=47.52 Aligned_cols=365 Identities=14% Similarity=0.119 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Q 001249 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQL 764 (1114)
Q Consensus 685 ~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1114)
+.+|..|+.-++.....++- .-++++....-.+++.....+.|.++.+.|..+++.-.. .....-..+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~---~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~---------~~~~~R~~f 71 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL---SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDS---------SSGLMRAEF 71 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccc---------ccHHHHHHH
Confidence 44666777777776665432 456777777777777766778999999998877664211 011111222
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHH-HHHHhhcCCCCChHhh
Q 001249 765 SDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKR-ERAERAKAEDFDAEES 843 (1114)
Q Consensus 765 ~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~d~~~~ 843 (1114)
+. .+.....++.....++++..+.. -|..+.. ....+...+..-+....+..+ .+..............
T Consensus 72 F~--------~I~~~~~~~d~~~~l~aL~~LT~-~Grdi~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~ 141 (464)
T PF11864_consen 72 FR--------DISDPSNDDDFDLRLEALIALTD-NGRDIDF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGL 141 (464)
T ss_pred HH--------HHhcCCCchhHHHHHHHHHHHHc-CCcCchh-cccchHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 22 22222222222234444443332 2443211 122223333333322221000 0000000000000000
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchh-hhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhH
Q 001249 844 ELIKEENEQEEEVFDQVGEILGTLIKTFKAAFL-PFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYE 922 (1114)
Q Consensus 844 ~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~ 922 (1114)
.. .+.+.........++..++|.....+- ..+..++..+...........+-..++.+|+.++.+..-. ...++
T Consensus 142 ~~----~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP-~~sl~ 216 (464)
T PF11864_consen 142 SN----LDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP-SESLS 216 (464)
T ss_pred cc----ccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC-hHHHH
Confidence 00 001223334455666666665544432 3445566655555445556666788899999998764221 22445
Q ss_pred hHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcC
Q 001249 923 TYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHR 1002 (1114)
Q Consensus 923 ~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~ 1002 (1114)
.++..+-...... ..++.+-.++..++... +-...+..|..+|..++.....+..+...|+..+++++...+
T Consensus 217 ~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~------~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~ 288 (464)
T PF11864_consen 217 PCIEVLCSIVNSV--SLCKPSWRTMRNLLKSH------LGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSG 288 (464)
T ss_pred HHHHHHhhHhccc--ccchhHHHHHHHHHcCc------cHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccc
Confidence 5555554443322 56666777777777532 223466777777743333334466777789999999888774
Q ss_pred CC----CCHhh--HHHHHHhcCCCCCcHHHHHHHHHHHHHHH-hhcCCcccCcCcCchhHHHHHHHHHhcCC---CCC--
Q 001249 1003 DS----IDAAQ--VVPAWLNCLPIKGDLIEAKIVHEQLCSMV-ERSDSDLLGPNHQYLPKIVSVFAEILCGK---DLA-- 1070 (1114)
Q Consensus 1003 ~~----~~~~~--~~~~~l~~Lp~~~d~~e~~~~~~~l~~l~-~~~~~~~~~~~~~~l~~i~~~~~~~l~~~---~~~-- 1070 (1114)
+. ++... ++|.+...|.... ....-.+...+..++ ....+.+... .-+.++.++....... +..
T Consensus 289 ~~~~~~l~~~~~~vl~sl~~al~~~~-~~v~~eIl~~i~~ll~~~~~~~l~~~---~W~~~~~i~~~~~~~~~~~~~~~~ 364 (464)
T PF11864_consen 289 EQGYPSLPFSPSSVLPSLLNALKSNS-PRVDYEILLLINRLLDGKYGRELSEE---DWDIILDIIEEIFDKIQPFDSWYS 364 (464)
T ss_pred cCCcceecccHHHHHHHHHHHHhCCC-CeehHHHHHHHHHHHhHhhhhhhccc---CchHHHHHHHHHHhhccccccccc
Confidence 32 23444 9999999886433 233334556666666 5555443332 2334555555443311 110
Q ss_pred -C---HHHHHHHHHHHHHHHhh
Q 001249 1071 -T---EQTLSRIVNLLKQLQQT 1088 (1114)
Q Consensus 1071 -~---~~~~~~~~~~l~~~~~~ 1088 (1114)
+ ..+...+.+++..+++.
T Consensus 365 ~~~~~~~~~~~~~~l~~~ie~L 386 (464)
T PF11864_consen 365 NSSSLDQLSSNLHSLLSSIESL 386 (464)
T ss_pred cccchHHHHHHHHHHHHHHHHH
Confidence 1 45666666666655544
No 186
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.17 E-value=0.048 Score=47.57 Aligned_cols=99 Identities=23% Similarity=0.306 Sum_probs=76.4
Q ss_pred HHHHhHHHHHHHHHhcCCC----CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHH
Q 001249 411 VMVKNLEQVLSMVLNSFRD----PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1114)
Q Consensus 411 ~~~~~l~~i~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1114)
.+.+++=.++..+-..+.| ....-|..+..+++.+.+..++.+ ..+.++++..|-..+.. +.++..|+.+..
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i-~~~~pQI~a~L~sal~~---~~l~~~al~~W~ 79 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHI-SSARPQIMACLQSALEI---PELREEALSCWN 79 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhCC---hhhHHHHHHHHH
Confidence 4556666666666666666 344568899999999999666655 56777777777777765 589999999999
Q ss_pred HhhhcCCcccccCchHHHHHHHHHHhh
Q 001249 487 NFSENCTPEILTPYLDGIVSKLLVLLQ 513 (1114)
Q Consensus 487 ~l~~~~~~~~l~~~l~~il~~L~~~l~ 513 (1114)
.|+..++.+.+.|.++.++-.+++.++
T Consensus 80 ~fi~~L~~~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 80 CFIKTLDEEDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999988888888888887776553
No 187
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=3.2 Score=52.16 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCC
Q 001249 856 VFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDE 935 (1114)
Q Consensus 856 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~ 935 (1114)
+-..+.-+++......++++.|+...++-. . .+.+...|..|+..+..++...|+.....+++.+|.+-+.+.|.
T Consensus 1520 v~~~li~~i~~~~~a~~~d~~pl~~k~l~~----t-rss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~ 1594 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADKDDLKPLNQKILKK----T-RSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDE 1594 (1621)
T ss_pred HHHHHHHHHHhhccCChhhhHHHHHHHHHH----h-ccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhh
Confidence 334455566666666666666666654432 2 34567889999999999999999999999999999999999999
Q ss_pred ChhHHhhhhHHHHHHHhhcCCCchH
Q 001249 936 NQDVRQAAVYGLGVCAEFGGSVVKP 960 (1114)
Q Consensus 936 ~~~vr~~a~~~lg~l~~~~~~~~~~ 960 (1114)
+..|...+...+..+=...|+.+..
T Consensus 1595 ~~~Ve~~~q~li~q~e~~lGE~l~~ 1619 (1621)
T KOG1837|consen 1595 DDEVECLCQKLIRQLEEVLGEPLQS 1619 (1621)
T ss_pred HHHHHHHHHHHHHHHHHHhchhhhh
Confidence 9999888888777777776765443
No 188
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.07 E-value=6.7 Score=49.78 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=91.3
Q ss_pred hHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001249 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1114)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1114)
.+-.++|.+..-|...+..+|..|...+|++.......+ ...++.++...+..+.| .+..||..+.......+-+.+
T Consensus 256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l-~~~~~~~~~~fl~r~~D-~~~~vR~~~v~~~~~~l~~~~- 332 (1266)
T KOG1525|consen 256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQL-SETYDDLWSAFLGRFND-ISVEVRMECVESIKQCLLNNP- 332 (1266)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhh-cccchHHHHHHHHHhcc-CChhhhhhHHHHhHHHHhcCc-
Confidence 455778888888999999999999999999987655444 35578899999999999 899999999888777665532
Q ss_pred ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhh-hhHhhhhHHHHHHHhhccCccchhhhHHHHHHHH
Q 001249 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ-KYYDAVMPFLKAILVNATDKSNRMLRAKSMECIS 573 (1114)
Q Consensus 495 ~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~-~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~ 573 (1114)
. ........+.....+.++.+|....-++..+. .. .|. .|.+.++..+.+.+ .+....+|..|+..++
T Consensus 333 ~----~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~-v~--~~~l~~~~~ll~~~~eR~----rDKk~~VR~~Am~~La 401 (1266)
T KOG1525|consen 333 S----IAKASTILLALRERDLDEDVRVRTQVVIVACD-VM--KFKLVYIPLLLKLVAERL----RDKKIKVRKQAMNGLA 401 (1266)
T ss_pred h----hhhHHHHHHHHHhhcCChhhhheeeEEEEEee-hh--HhhhhhhHHHHHHHHHHH----hhhhHHHHHHHHHHHH
Confidence 1 12222222222223444444433222211111 00 111 12222333333332 2345678888888888
Q ss_pred HHHH
Q 001249 574 LVGM 577 (1114)
Q Consensus 574 ~i~~ 577 (1114)
.+-.
T Consensus 402 qlYk 405 (1266)
T KOG1525|consen 402 QLYK 405 (1266)
T ss_pred HHHH
Confidence 8776
No 189
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.03 E-value=4 Score=46.84 Aligned_cols=106 Identities=12% Similarity=-0.009 Sum_probs=63.6
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCc
Q 001249 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY 500 (1114)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~ 500 (1114)
..++++..+..|.+|.-++.|+|-.+-.-+. +..++. +.++.+.+. .+..++..|..+|....-.++.+...-+
T Consensus 542 sLi~pavrs~~l~iRelglKOGglccLln~d-lA~en~----~ill~c~~k-g~v~LK~~al~~l~D~fi~fg~e~fk~~ 615 (892)
T KOG2025|consen 542 SLIFPAVRSLVLSIRELGLLCLGLCCLLNGD-LAKEND----DILLPCSQK-GKVALKHRALDDLRDRFIAFGLERFKCT 615 (892)
T ss_pred HHHHHHHHhcCccHHhhhhhhhhhhhhcchh-hhhhcC----cEEEEeeec-CceEEEeehHHHHHHHHHHhccccceec
Confidence 3556677788999999999999876643222 212333 334444544 4556666777777766665554444455
Q ss_pred hHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHH
Q 001249 501 LDGIVSKLLVLLQNG-KQMVQEGALTALASVAD 532 (1114)
Q Consensus 501 l~~il~~L~~~l~~~-~~~v~~~al~~l~~l~~ 532 (1114)
-..++......+... .++-+.-+..++..+..
T Consensus 616 ~d~~lki~~~~L~~~~~~E~qtl~aea~cKlll 648 (892)
T KOG2025|consen 616 QDDHLKIYCSILFFELFSEDQTLLAEAFCKLLL 648 (892)
T ss_pred hHHHHHHHHHHHccccchHHHHHHHHHHHHHHh
Confidence 566666666666543 35555556666655443
No 190
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.03 E-value=1.9 Score=48.15 Aligned_cols=152 Identities=16% Similarity=0.086 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHc-CCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001249 21 SAPFETLISHLM-STSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1114)
Q Consensus 21 ~~~l~~ll~~~~-s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~ 99 (1114)
+..+..++..+. .++.+++..|-..+..... |.. +..|+..+. +.++.+|.-++.-|..+-. +
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~~~-~~~L~~~L~-d~~~~vr~aaa~ALg~i~~-----------~- 116 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQED--ALD-LRSVLAVLQ-AGPEGLCAGIQAALGWLGG-----------R- 116 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccCC--hHH-HHHHHHHhc-CCCHHHHHHHHHHHhcCCc-----------h-
Confidence 455666666663 4556676665555544432 332 577788775 4567788888887764211 1
Q ss_pred HHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhh
Q 001249 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1114)
Q Consensus 100 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 179 (1114)
.....|+..|.+ .++.+|..+..+++. +. .+-.+.+...++++++.+|..|+.+++.+...
T Consensus 117 ---~a~~~L~~~L~~-~~p~vR~aal~al~~---r~------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------ 177 (410)
T TIGR02270 117 ---QAEPWLEPLLAA-SEPPGRAIGLAALGA---HR------HDPGPALEAALTHEDALVRAAALRALGELPRR------ 177 (410)
T ss_pred ---HHHHHHHHHhcC-CChHHHHHHHHHHHh---hc------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc------
Confidence 233456666765 577888766555543 11 12356677777788888888888888877532
Q ss_pred hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001249 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (1114)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 212 (1114)
..++.+...+.+. ++.||..|+.++..+
T Consensus 178 ----~a~~~L~~al~d~-~~~VR~aA~~al~~l 205 (410)
T TIGR02270 178 ----LSESTLRLYLRDS-DPEVRFAALEAGLLA 205 (410)
T ss_pred ----cchHHHHHHHcCC-CHHHHHHHHHHHHHc
Confidence 1122344557776 888888888877544
No 191
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.02 E-value=4.8 Score=47.73 Aligned_cols=145 Identities=11% Similarity=0.260 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC-CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhc
Q 001249 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1114)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1114)
..+|--+...++.++-...+. ....+|.+.+.|. .....+|.....+++.+|..... ..+..+|.+...|
T Consensus 945 ~~vra~~vvTlakmcLah~~L----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa-----m~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRL----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA-----MTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH-----HHHHhhHHHHHHh
Confidence 456666677777666544332 3345666665554 34567888888888888866532 3466788889999
Q ss_pred cCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHH
Q 001249 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFL 549 (1114)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L 549 (1114)
.| +++-||..++..|.+++.. + +..+-..++=.++..+-+.++.+|..+=-+++.+...-.+.| ++..+++.+
T Consensus 1016 ~D-p~~iVRrqt~ilL~rLLq~---~-~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~--f~~~FVe~i 1088 (1529)
T KOG0413|consen 1016 CD-PSVIVRRQTIILLARLLQF---G-IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNF--FPLNFVEYI 1088 (1529)
T ss_pred cC-chHHHHHHHHHHHHHHHhh---h-hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccc--hHHHHHHHH
Confidence 99 9999999999999988754 2 224445555555555667889999999999999887665554 334444444
Q ss_pred HH
Q 001249 550 KA 551 (1114)
Q Consensus 550 ~~ 551 (1114)
..
T Consensus 1089 ~~ 1090 (1529)
T KOG0413|consen 1089 IA 1090 (1529)
T ss_pred HH
Confidence 43
No 192
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.01 E-value=0.76 Score=49.39 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhh--
Q 001249 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-- 179 (1114)
Q Consensus 102 ~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~-- 179 (1114)
..+...++.++.+ ++..+|..+..++|.++-.+. ..-.+.++.+.+.++..+..++..|+.++..+.-..|....
T Consensus 26 ~ll~~lI~P~v~~-~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 26 SLLDSLILPAVQS-SDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 4455556678887 688999999999999887532 34467788888888777889999999999888876553321
Q ss_pred -------hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001249 180 -------PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1114)
Q Consensus 180 -------~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1114)
.....++..+.+.+.+. ++++|..|++.+..++-.
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence 12457888999999997 899999999999998865
No 193
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.08 Score=53.80 Aligned_cols=127 Identities=20% Similarity=0.225 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHcCCCcchH---HHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhH
Q 001249 358 GQECLDRLAIALGGNTIVP---VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 434 (1114)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 434 (1114)
+...+.+|+..-+ +.+.+ .++-.+.+.+++..-.+-.+|+.+++.+.+...+.+...++.++..++..-.+.+..|
T Consensus 108 gLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 108 GLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 4556666665443 33322 2333445556677778889999999999998888777788888888888888899999
Q ss_pred HHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001249 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1114)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1114)
|..|-.+|..+..+..|. .+++.|...+.. .+++++..++..+......++
T Consensus 187 reda~kAL~aMV~~vtp~-------~~L~~L~~~~~~-~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 187 REDAEKALVAMVNHVTPQ-------KLLRKLIPILQH-SNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHHHHhccChH-------HHHHHHHHHHhh-hchhhhhhhhccccccceecc
Confidence 999999999998877663 366666666777 789999988888777666554
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.66 E-value=0.59 Score=55.52 Aligned_cols=183 Identities=16% Similarity=0.179 Sum_probs=119.5
Q ss_pred ChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchH--------HHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCC
Q 001249 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDS--------LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSF 91 (1114)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~--------~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~ 91 (1114)
.|+||--+|+-++|. -.|-+|-..|..|..--|=+ .-+|.+.+|++ ...+.|..-+-+=-+++.-
T Consensus 470 PPeQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS-~a~ELrpiLVFIWAKILAv---- 542 (1387)
T KOG1517|consen 470 PPEQLPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS-SARELRPILVFIWAKILAV---- 542 (1387)
T ss_pred ChHhcchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc-chHhhhhhHHHHHHHHHhc----
Confidence 478888888888876 56777888788776543311 23677788864 3456666554444444432
Q ss_pred cccCCCHH-HHHHHHHH----HHHHHhh--chhhhHHHHHHHHHHHHHhcccCCCC----chhhHHHHHHhhcCC-Chhh
Q 001249 92 LWPRLSLH-TQSSLKSM----LLQSIQL--ESAKSISKKLCDTVSELASNILPENG----WPELLPFMFQCVSSD-SVKL 159 (1114)
Q Consensus 92 ~w~~l~~~-~~~~i~~~----ll~~l~~--e~~~~vr~~~~~~i~~ia~~~~~~~~----w~~ll~~l~~~~~~~-~~~~ 159 (1114)
++. +.+.+|.. .++.|.. .-+++-|..++-+++.|++. ++.++ -.+++......+.++ .+-.
T Consensus 543 -----D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n-f~lGQ~acl~~~li~iCle~lnd~~~pLL 616 (1387)
T KOG1517|consen 543 -----DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN-FKLGQKACLNGNLIGICLEHLNDDPEPLL 616 (1387)
T ss_pred -----CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc-cchhHHHhccccHHHHHHHHhcCCccHHH
Confidence 222 23333331 1222221 12347788889999999886 55443 257888888888874 6889
Q ss_pred HHHHHHHHHHhhhhhhhh-hhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhc
Q 001249 160 QESAFLIFAQLSQYIGDT-LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1114)
Q Consensus 160 r~~al~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (1114)
|+....+|+.+-+++.+. ..-.-..-...+...|.|+ .++||.+|+-+|+.++...
T Consensus 617 rQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 617 RQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhccc
Confidence 999999999999876543 1111122334566677887 9999999999999999864
No 195
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.63 E-value=0.9 Score=51.32 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHH------Hh----hc
Q 001249 765 SDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERA------ER----AK 834 (1114)
Q Consensus 765 ~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~------~~----~~ 834 (1114)
++.++..|++.++.|.+..++...-.+++.++..+.. -.+.-.+++++.+...++.-........ +. ..
T Consensus 310 LnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~-rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k 388 (441)
T PF12054_consen 310 LNPIIRPLMDSIKREENELLQQRSAESLARLIQLCVD-RKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRK 388 (441)
T ss_pred ccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhC-CCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhh
Confidence 5567788889999999999999999999999988763 2223345667776666542111000000 00 00
Q ss_pred CCCC-ChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHH
Q 001249 835 AEDF-DAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELS 883 (1114)
Q Consensus 835 ~~~~-d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~ 883 (1114)
.++- |..+....+++.....--+.++..+|..+++.+|+....-+..++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~a~I~RrGA~~aL~~l~~~FG~~Lf~~lP~Lw 438 (441)
T PF12054_consen 389 EEDKADHADAASEEREQKEARIQRRGAELALEQLAKRFGSSLFEKLPKLW 438 (441)
T ss_pred hcccccccccccchhhhhhhHHHhcCHHHHHHHHHHHHhHHHHHhhhHHH
Confidence 0000 000001111122233456778889999999999988744444443
No 196
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=7.6 Score=46.51 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=55.4
Q ss_pred hhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhc
Q 001249 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1114)
Q Consensus 143 ~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (1114)
..++.+..+..++++.+|+.-+.....+...+...+......++..++..-+++ +++++....+.+..+.+.+
T Consensus 278 ~~~~~~~~~~~~~~~~v~~aL~d~~~~Ll~~C~~sL~~c~~~llesll~L~ndE-n~ki~~~~~~~l~~~~eq~ 350 (1014)
T KOG4524|consen 278 IALKAIIPLRKHNNESVREALADFVSILLTRCENSLNNCEKHLLESLVHLENDE-NPKLPSHCVKLLEVLNEQL 350 (1014)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHH
Confidence 344555555667788888888888777777777777766667777777777886 9999999999888887765
No 197
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.34 Score=50.88 Aligned_cols=146 Identities=14% Similarity=0.088 Sum_probs=93.4
Q ss_pred CCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHH
Q 001249 154 SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMM 233 (1114)
Q Consensus 154 ~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll 233 (1114)
+.+...++.|+.-|..+++.+.....-+-...+..++..+++. +..+|..|++.++.+++.-+. ..+.+.+. ..+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~--~Qe~v~E~--~~L 168 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPK--SQEQVIEL--GAL 168 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHH--HHHHHHHc--ccH
Confidence 4577889999999999999876532212222333444488987 999999999999999987421 12222111 134
Q ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHh
Q 001249 234 RTLTESLN-NGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1114)
Q Consensus 234 ~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1114)
+.|...+. +++..++..++-++..+++..+.-....+. .=+..+..++..++.+...+..++.++..+.+.
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 44444444 344566789999999998887655444332 113344455555545666777888888877773
No 198
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.36 E-value=1.5 Score=49.31 Aligned_cols=239 Identities=12% Similarity=0.135 Sum_probs=142.1
Q ss_pred ChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchH---HHHHHHHHHc----cCCCHHHHHHHHHHHHHhcccCCCCc
Q 001249 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDS---LTLKLAHLLQ----RSPHPEARAMAAVLLRKLLTRDDSFL 92 (1114)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~---~~~~L~~il~----~~~~~~~R~~A~~~Lk~~l~~~~~~~ 92 (1114)
|..-+.+++..+.|+|...|......|..+....++. ....+..++. ......-=.-...++...++..
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf---- 206 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGF---- 206 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT-----
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc----
Confidence 5567888999999999999999999888755433321 1122223332 1222111222344555555542
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 001249 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1114)
Q Consensus 93 w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~ 172 (1114)
=..+.++.+..+.+.++.......-......++.++..+...+- .--..++..++..---.+..-...-+.-+..+++
T Consensus 207 ~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp--~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~ 284 (409)
T PF01603_consen 207 AVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP--SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILE 284 (409)
T ss_dssp -SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G--GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH
Confidence 12466888888888888888765555567888888888877531 1223334444443333444444556777888887
Q ss_pred hhh-hhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH--HHhcCCcchHhHHHhhHHHHHHHHHHHHhCC-CHHHH
Q 001249 173 YIG-DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF--IQCLTSSADRDRFQDLLPLMMRTLTESLNNG-NEATA 248 (1114)
Q Consensus 173 ~~~-~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l--~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~-~~~~~ 248 (1114)
.++ +.+......++..+..+++++ +..|-..|+....+= +..+. +.-...+|.+...+.+..... +..++
T Consensus 285 ~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~li~-----~~~~~i~p~i~~~L~~~~~~HWn~~Vr 358 (409)
T PF01603_consen 285 VLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSLIS-----QNSRVILPIIFPALYRNSKNHWNQTVR 358 (409)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHHHH-----CTHHHHHHHHHHHHSSTTSS-SSTTHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHHHH-----hChHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 765 446667888999999999997 888887777655421 22221 111334555555554433322 56788
Q ss_pred HHHHHHHHHHHccchHHHHHHH
Q 001249 249 QEALELLIELAGTEPRFLRRQL 270 (1114)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~~~~~ 270 (1114)
..+..++..+.+..+..+....
T Consensus 359 ~~a~~vl~~l~~~d~~lf~~~~ 380 (409)
T PF01603_consen 359 NLAQNVLKILMEMDPKLFDKCA 380 (409)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHH
Confidence 8888888888888777776643
No 199
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.35 E-value=10 Score=46.62 Aligned_cols=133 Identities=16% Similarity=0.180 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcH-----HHHHHhHH-HHHHHHHhcCCC
Q 001249 356 SVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-----KVMVKNLE-QVLSMVLNSFRD 429 (1114)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-----~~~~~~l~-~i~~~l~~~l~d 429 (1114)
+.-...|..++..+| +-+.+.+- .+...+.+.+...|.+.+.+++.++...- +...+.+. .++..+...+.|
T Consensus 293 k~v~~fL~elS~~~P-~l~~~~l~-~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~D 370 (1251)
T KOG0414|consen 293 KIVGNFLVELSERVP-KLMLRQLT-LLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLD 370 (1251)
T ss_pred hhHHHHHHHHHHHhH-HHHHHHHH-HHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhc
Confidence 334456677776665 34444333 33346778889999999999998765322 12223333 488999999999
Q ss_pred CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001249 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1114)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1114)
-++.||..++.....++..-... ......++...+..+.| .+.-||..|+..+..+....+
T Consensus 371 vsa~vRskVLqv~~~l~~~~s~p--~~~~~eV~~la~grl~D-kSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 371 VSAYVRSKVLQVFRRLFQQHSIP--LGSRTEVLELAIGRLED-KSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHccCCC--ccHHHHHHHHHhccccc-ccHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999988754322 25678899999999999 899999999999999887654
No 200
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.32 E-value=0.096 Score=49.28 Aligned_cols=136 Identities=15% Similarity=0.172 Sum_probs=94.4
Q ss_pred chHHHHHHHHHHHHhhcCCC------------CCChhhhhhHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHH
Q 001249 958 VKPLVGEALSRLNVVIRHPN------------ALQPENLMAYDNAVSALGKICQFHRDSIDAAQVVPAWLNCLPIKGDLI 1025 (1114)
Q Consensus 958 ~~~~~~~~l~~L~~~l~~~~------------~~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~~~~~l~~Lp~~~d~~ 1025 (1114)
+.|+++.++|.+..-..... +..|+..++|..|-.|+..++..+...+++..++..+...|.. +.+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D--~~D 80 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD--EHD 80 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS---HH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC--cHH
Confidence 45778889999987765321 2346889999999999999999988888889999999998843 556
Q ss_pred HHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCC---CCC------CHHHHHHHHHHHHHHHhhCChh----
Q 001249 1026 EAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGK---DLA------TEQTLSRIVNLLKQLQQTLPPA---- 1092 (1114)
Q Consensus 1026 e~~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~~~~l~~~---~~~------~~~~~~~~~~~l~~~~~~~~~~---- 1092 (1114)
-..-++..+.+++...+..+.. +++.++..+...|..+ +.. ..|....+.+.+..+...+|+.
T Consensus 81 Ik~L~~~~l~kl~~~~p~~v~~----~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~ 156 (169)
T PF08623_consen 81 IKMLCHLMLSKLAQLAPEEVLQ----RLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSP 156 (169)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHH----CCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH
T ss_pred HHHHHHHHHHHHHHhCHHHHHH----HHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCH
Confidence 6778899999998655444444 5888888888888622 111 1356666677777786677632
Q ss_pred -hHHHHHh
Q 001249 1093 -TLASTWS 1099 (1114)
Q Consensus 1093 -~~~~~~~ 1099 (1114)
.|..+|.
T Consensus 157 ~~~~~f~~ 164 (169)
T PF08623_consen 157 NKWNEFVE 164 (169)
T ss_dssp -HHHHHHH
T ss_pred HHHHHHHH
Confidence 3666665
No 201
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.01 E-value=2.7 Score=47.63 Aligned_cols=242 Identities=12% Similarity=0.112 Sum_probs=124.0
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHH-HHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhh
Q 001249 390 EWQKHHAALIALAQIAEGCAKVMVKNLEQVLS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGA 468 (1114)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~ 468 (1114)
-++.|.+|..+||.+....+. ..+..+.. .+..+|++++..-|..++..+..++............+.+.+.|...
T Consensus 100 v~r~Ri~aA~ALG~l~~~~~~---~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 100 VIRARIAAAKALGLLLSYWPE---SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 378899999999999987643 34445554 68889999999999999999999998765432111125666677777
Q ss_pred ccCCCC-----------hhHHHHHHHHHHHhhhcCC--cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 469 MDDFQN-----------PRVQAHAASAVLNFSENCT--PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 469 l~~~~~-----------~~v~~~a~~al~~l~~~~~--~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
|.+ +. .++|..+-..+..|.+... .+. .|.++.+++.--. ..++...-+.|-...+.......
T Consensus 177 L~~-~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~k-lp~l~~~v~~~~~--~~p~~fsi~~A~~v~~~~~~~l~ 252 (441)
T PF12054_consen 177 LEN-PEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSK-LPSLPVVVQGEPE--AGPEAFSIEQAEKVVGEDFEKLK 252 (441)
T ss_pred HcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhh-ccccccccccccc--cCCccCCHHHHHHHHHHHHHHHH
Confidence 774 21 1345555555555554322 111 1222222110000 00111111223333332222222
Q ss_pred hhhhh------------hHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCC
Q 001249 536 EHFQK------------YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQM 603 (1114)
Q Consensus 536 ~~~~~------------~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~ 603 (1114)
..+.+ .-..+...+...- ........|..|.-+-+.++...=++++.|.+..+|+.+..
T Consensus 253 ~~l~~~~k~~a~~~Le~~r~~l~~ai~~~~---~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~------ 323 (441)
T PF12054_consen 253 KSLSPSQKLSALQALEDRRQRLQAAIEEAK---EVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKR------ 323 (441)
T ss_pred HhcCCcccchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhc------
Confidence 11111 0011111111110 01112223333333333333322246788887777776643
Q ss_pred CCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCC
Q 001249 604 ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKP 647 (1114)
Q Consensus 604 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~ 647 (1114)
+.+..+...+..++..+...+-..-..--++|+..|...+..|+
T Consensus 324 Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~ 367 (441)
T PF12054_consen 324 EENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDT 367 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCc
Confidence 33455677777777777766543333334778888888876553
No 202
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.95 E-value=3.5 Score=44.55 Aligned_cols=100 Identities=12% Similarity=0.200 Sum_probs=74.9
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHH----HhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhch-------hHHhhhh
Q 001249 390 EWQKHHAALIALAQIAEGCAKVMV----KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-------DLQNQFH 458 (1114)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~----~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~~ 458 (1114)
-|..|..-...+..+.+.|.+.+. ..+..++..+..++++++..|...++.++..+.+.+.. .+...|+
T Consensus 133 yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~ 212 (319)
T PF08767_consen 133 YPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYY 212 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 589999999999999998876443 45778899999999999999999999999999887754 3334566
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhh
Q 001249 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1114)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1114)
-.++..++..+.|..+...-..-+..|..++
T Consensus 213 ~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 213 LDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp HHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 6777777777877444444344445555555
No 203
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=94.94 E-value=7 Score=43.99 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHh-
Q 001249 203 IAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIA- 281 (1114)
Q Consensus 203 ~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~- 281 (1114)
..-+.-+..++..+ ....+....+.+.+.+..++++.+..++..|+..|..- .....+..+-..+++.++..+
T Consensus 273 v~FL~el~~il~~~----~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~--~~~~li~~~~~~i~p~i~~~L~ 346 (409)
T PF01603_consen 273 VLFLNELEEILEVL----PPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNE--YFLSLISQNSRVILPIIFPALY 346 (409)
T ss_dssp HHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH--HHHHHHHCTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH--HHHHHHHhChHHHHHHHHHHHH
Confidence 34455555555544 34567888888999999999999999999998776421 112334444455566555543
Q ss_pred --ccCCcchhHHHHHHHHHHHHHH
Q 001249 282 --EAESLEEGTRHLAIEFVITLAE 303 (1114)
Q Consensus 282 --~~~~~~~~vr~~a~~~l~~l~~ 303 (1114)
...+.+..+|..|..++..+.+
T Consensus 347 ~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 347 RNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp STTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2346788999999999888877
No 204
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.91 E-value=0.28 Score=59.22 Aligned_cols=170 Identities=19% Similarity=0.186 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHcCCC--cchHHHHHHHHHhhC----CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCC
Q 001249 357 VGQECLDRLAIALGGN--TIVPVASEQLPAYLA----APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDP 430 (1114)
Q Consensus 357 ~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~----~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~ 430 (1114)
-|..+|..++..+|+. ..+|++..++...++ +.+ .-...+..+..+.......+.+ +-+.+|.++..+...
T Consensus 752 gael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d--~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~ 828 (1549)
T KOG0392|consen 752 GAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND--EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSI 828 (1549)
T ss_pred hHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc--chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccc
Confidence 3566788888888742 234445444443333 222 1111222222222222333334 557788899999999
Q ss_pred ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhH-HHHHHHHHHHhhhcCCcccccCchHHHHHHHH
Q 001249 431 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV-QAHAASAVLNFSENCTPEILTPYLDGIVSKLL 509 (1114)
Q Consensus 431 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v-~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~ 509 (1114)
++.+|.+|+.|++.+...... ..+..++..++..+++ .+.-+ |..+...+..+..... ..+.||.+-+++.|+
T Consensus 829 ~~a~r~~~ar~i~~~~k~~~~----e~m~~v~~~~~~ll~~-~~~~~~r~~a~e~~~~l~~~l~-~~l~~~~~Llv~pll 902 (1549)
T KOG0392|consen 829 HIAVRYAAARCIGTMFKSATR----ETMATVINGFLPLLGD-LDKFVRRQGADELIELLDAVLM-VGLVPYNPLLVVPLL 902 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhccc-hhhHhhhhhHHHHHHHHHHhhc-ccccccceeehhhhh
Confidence 999999999999998876543 3344555666666666 33333 4555555555655554 347799999999999
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 510 VLLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 510 ~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
..+.+....+|..+-.+++.+....+
T Consensus 903 r~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 903 RRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred cccccchHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999887654
No 205
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=94.90 E-value=14 Score=46.53 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=52.7
Q ss_pred HhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCchHHH--HHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHh
Q 001249 922 ETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLV--GEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQ 999 (1114)
Q Consensus 922 ~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~--~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~ 999 (1114)
...+..+++.|++.+-.|..|++.+|..+.-.++.. +.++ ...++.|.+++... +......++.||-.++.
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSK------hkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSK------HKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhh------hhhhhhhHHHHHHHHhc
Confidence 466788999999999999999999999998877643 2222 12456677777554 34566667777777776
Q ss_pred hcC
Q 001249 1000 FHR 1002 (1114)
Q Consensus 1000 ~~~ 1002 (1114)
+.|
T Consensus 602 ~RP 604 (2195)
T KOG2122|consen 602 FRP 604 (2195)
T ss_pred CCc
Confidence 554
No 206
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.17 Score=55.40 Aligned_cols=116 Identities=22% Similarity=0.213 Sum_probs=85.3
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHH
Q 001249 385 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPA 464 (1114)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~ 464 (1114)
.+++.+-.+|+||+.+||.++-.-++ .++..+.....+.|+.||...+.+||-.|...+... .+..
T Consensus 560 avsD~nDDVrRAAViAlGfvc~~D~~-------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~di 625 (926)
T COG5116 560 AVSDGNDDVRRAAVIALGFVCCDDRD-------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDI 625 (926)
T ss_pred ecccCchHHHHHHHHheeeeEecCcc-------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHH
Confidence 46678899999999999987643221 222222223346789999999999999887665432 2333
Q ss_pred HHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCC
Q 001249 465 LAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 516 (1114)
Q Consensus 465 l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~ 516 (1114)
|-..+.| ++.-||..||-+++-+...+.++ +.|....|...+.+++.+..
T Consensus 626 L~~L~~D-~~dfVRQ~AmIa~~mIl~Q~n~~-Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 626 LEALMYD-TNDFVRQSAMIAVGMILMQCNPE-LNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred HHHHhhC-cHHHHHHHHHHHHHHHHhhcCcc-cChhHHHHHHHHHHHHhhhh
Confidence 3344556 78899999999999999998866 67899999999998887654
No 207
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.89 E-value=0.81 Score=48.55 Aligned_cols=147 Identities=14% Similarity=0.181 Sum_probs=101.1
Q ss_pred hhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc---ccC--chHHHHHHHHHHhh--------cCCh
Q 001249 451 PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI---LTP--YLDGIVSKLLVLLQ--------NGKQ 517 (1114)
Q Consensus 451 ~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~---l~~--~l~~il~~L~~~l~--------~~~~ 517 (1114)
+.+ ..+++-++|.++..++| ..+.+|..+|..|..+++.++... +.. ..+.+-+.+..++- +.+.
T Consensus 111 ~~i-~~~~~liiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 111 PWI-SQHWPLIIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred chH-HHhhhHHHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 444 68899999999999999 899999999999999999887654 332 24445556666665 4456
Q ss_pred hHHHHHHHHHHHHHHhhhh-hhhhhHhhhh----HHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHH
Q 001249 518 MVQEGALTALASVADSSQE-HFQKYYDAVM----PFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 592 (1114)
Q Consensus 518 ~v~~~al~~l~~l~~~~~~-~~~~~~~~i~----~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~ 592 (1114)
.+-..++.|+-.++..... .-.++...+. ..++..+....+-.+..++...++.+..+...+| .....|++.++
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG-i~~~~hL~rii 267 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG-ISSVKHLQRII 267 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHH
Confidence 7778899999998876421 1112222222 3344333322221245677778888888888888 56778888888
Q ss_pred HHHHHHhc
Q 001249 593 EVLMSLQG 600 (1114)
Q Consensus 593 ~~l~~~~~ 600 (1114)
..+.++..
T Consensus 268 ~~l~~~l~ 275 (282)
T PF10521_consen 268 PVLSQILE 275 (282)
T ss_pred HHHHHHhc
Confidence 88877544
No 208
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=94.86 E-value=10 Score=44.11 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=62.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhhhc---CchH--HHHHHHHHHccCC-CHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 25 ETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDS--LTLKLAHLLQRSP-HPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 25 ~~ll~~~~s~d~~~r~~Ae~~L~~~~~~---~p~~--~~~~L~~il~~~~-~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
..+|..+.|++..+|+..-+.|+.+.++ +|.. =+..|++...+.. ++-+|.++.++++.-+. +++.
T Consensus 26 ~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~--------Rl~~ 97 (501)
T PF13001_consen 26 PPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD--------RLDD 97 (501)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh--------cCCH
Confidence 3345566799999999999998876554 2321 1456777777644 78999999999988654 5889
Q ss_pred HHHHHHHHHHHHHHhh
Q 001249 99 HTQSSLKSMLLQSIQL 114 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~ 114 (1114)
+.+..+...+++++..
T Consensus 98 ~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 98 EERRELLPSLLKGISK 113 (501)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999999984
No 209
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=16 Score=46.33 Aligned_cols=176 Identities=9% Similarity=0.084 Sum_probs=107.2
Q ss_pred hhHHHHHHHHHHHcCCCcchHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhcCCCCChh
Q 001249 356 SVGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPR 433 (1114)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~ 433 (1114)
..+.-+.+.++....+....+.++..+.... .+..|++|.+.+..+..+.-...- ....+.++|...+.+.+.|....
T Consensus 1505 ~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~ 1584 (1710)
T KOG1851|consen 1505 NSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIE 1584 (1710)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHH
Confidence 4555666666666555677788888777433 456899999988888776543221 23456778999999999999999
Q ss_pred HHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChh-HHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh
Q 001249 434 VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (1114)
Q Consensus 434 vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~-v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l 512 (1114)
||..|..+|+-+...-.-.+ .+..-.............. ....|.-+|+.++-.++-. +..+++..+..+....
T Consensus 1585 vre~Aa~~Lsgl~~~s~~~~----~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~-vP~wip~~L~~Ls~fa 1659 (1710)
T KOG1851|consen 1585 VREEAAKCLSGLLQGSKFQF----VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYV-VPLWIPKPLMNLSSFA 1659 (1710)
T ss_pred HHHHHHHHHHHHHhcccccc----chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhcccc-chhhhHHHHHHHHhhc
Confidence 99999999988865432211 2211222222222211222 3356677888887776532 3334555554444443
Q ss_pred hcCChhHHHHHHHHHHHHHHhhhhh
Q 001249 513 QNGKQMVQEGALTALASVADSSQEH 537 (1114)
Q Consensus 513 ~~~~~~v~~~al~~l~~l~~~~~~~ 537 (1114)
.++ ..++..+-.+++.+-....+.
T Consensus 1660 ~e~-~~i~~tvkktvseFrrth~D~ 1683 (1710)
T KOG1851|consen 1660 RES-AAIKQTVKKTVSEFRRTHADT 1683 (1710)
T ss_pred CCc-hHHHHHHHHHHHHHHHHhhhh
Confidence 333 556666666666665554443
No 210
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.81 E-value=0.32 Score=46.21 Aligned_cols=145 Identities=15% Similarity=0.265 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCC-CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhH-HHHHHHHHHHhhhcCC
Q 001249 416 LEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV-QAHAASAVLNFSENCT 493 (1114)
Q Consensus 416 l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v-~~~a~~al~~l~~~~~ 493 (1114)
.+.+++.+++.++. .++.+|..+.+++|.+.. +.|.. -. .+.....+ ..... -..+... ..+.....
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~-----~k---~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~~ 76 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYK-----HK---SIQKSLDS-KSSENSNDESTDI-SLPMMGIS 76 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHH-----Hh---cccccCCc-cccccccccchhh-HHhhccCC
Confidence 46788888887764 468999999999999874 33322 11 01111111 00000 0001111 11112221
Q ss_pred cccccC-chHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHH
Q 001249 494 PEILTP-YLDGIVSKLLVLLQNGK-QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMEC 571 (1114)
Q Consensus 494 ~~~l~~-~l~~il~~L~~~l~~~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~ 571 (1114)
+. ... |....+..|+..+++++ ..-...++.++-.+....+....+|++.++|.+...+.++.+ .+|...+.-
T Consensus 77 ~~-~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~----~~~e~~~~q 151 (160)
T PF11865_consen 77 PS-SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD----SLREFYFQQ 151 (160)
T ss_pred Cc-hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH----HHHHHHHHH
Confidence 11 123 44456788888888876 344456888888888888877899999999999999886432 344444444
Q ss_pred HHHHH
Q 001249 572 ISLVG 576 (1114)
Q Consensus 572 l~~i~ 576 (1114)
++.+.
T Consensus 152 L~~lv 156 (160)
T PF11865_consen 152 LADLV 156 (160)
T ss_pred HHHHH
Confidence 44443
No 211
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.83 Score=48.84 Aligned_cols=133 Identities=14% Similarity=0.174 Sum_probs=104.3
Q ss_pred hHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHh
Q 001249 144 LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRD 223 (1114)
Q Consensus 144 ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 223 (1114)
-+..++..+.+-+..+|..|++-+..+....+..+..+...+++.+.....|. +..||....+.+-.++..... +
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~----e 133 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACK----E 133 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcch----h
Confidence 35566667788899999999999999998877778878888999999888997 899999999999988876532 2
Q ss_pred HHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHh
Q 001249 224 RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIA 281 (1114)
Q Consensus 224 ~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~ 281 (1114)
....+++.++.-+..++..-.++++..++..|.-+++.+++.+..+...+++.+....
T Consensus 134 ~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i 191 (393)
T KOG2149|consen 134 DQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVI 191 (393)
T ss_pred hhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 2445666666666666777789999999999999999998777665555655554443
No 212
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.70 E-value=2 Score=47.86 Aligned_cols=171 Identities=16% Similarity=0.198 Sum_probs=98.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccC--CcchhHHHHHHHHHHHHHHhhhccchhhhcc
Q 001249 238 ESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAE--SLEEGTRHLAIEFVITLAEARERAPGMMRKL 315 (1114)
Q Consensus 238 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 315 (1114)
+.+.+.++..|..|++.|..=.. +...++-++.++..-.... ..+-..-...+.+..++.++ |.. .+
T Consensus 214 ~a~~g~~~~~r~eAL~sL~TDsG-----L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N----p~i--~l 282 (576)
T KOG2549|consen 214 EACTGSDEPLRQEALQSLETDSG-----LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN----PNI--FL 282 (576)
T ss_pred HHHhcCCHHHHHHHHHhhccCcc-----HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC----Ccc--ch
Confidence 33345788889999888764221 2222222222222222111 12233445567777777763 433 35
Q ss_pred hhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC--CcchHHHHHHHHHhhCC--CCh
Q 001249 316 PQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG--NTIVPVASEQLPAYLAA--PEW 391 (1114)
Q Consensus 316 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~~--~~~ 391 (1114)
.+|+..++|.++.|+....-.. ..+.|..|..+..|+.++..+...++. +.+-+.++..+...+.| ..|
T Consensus 283 epYlh~L~PSvlTCvVsk~l~~-------~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 283 EPYLHQLVPSVLTCVVSKNLCL-------RPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred hhHHHHHhhHHHHhhhhhhccC-------CccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 6899999999999876432110 012233566677888888888877763 23556666666666655 479
Q ss_pred hHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhc
Q 001249 392 QKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNS 426 (1114)
Q Consensus 392 ~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~ 426 (1114)
...++++..|..+....-. .+.+.+......+.+.
T Consensus 356 st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~ 391 (576)
T KOG2549|consen 356 STHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSV 391 (576)
T ss_pred hhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhh
Confidence 9999999999888753322 2233444444444433
No 213
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.68 E-value=3.7 Score=44.33 Aligned_cols=190 Identities=11% Similarity=0.158 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHH-HHhhc--cCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHH
Q 001249 517 QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA-ILVNA--TDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVME 593 (1114)
Q Consensus 517 ~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~-~l~~~--~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~ 593 (1114)
..+|+..+..+.+.++...+. ..-...++|.+.+ ++.+. +.++. --..++.+++.+...+| +.+.++++.+++
T Consensus 41 r~iKkeIL~Li~t~i~~~~~~-~~v~~~~i~~l~~~vL~DY~~~~p~~--r~~evL~l~~~ii~kl~-~~~~~~v~~I~~ 116 (319)
T PF08767_consen 41 RTIKKEILKLIETFISKAEDP-EEVANNFIPPLLDAVLGDYQNSVPDA--REPEVLSLMATIINKLG-ELIQPQVPQILE 116 (319)
T ss_dssp HHHHHHHHHHHHHHHHT-S-H-HHHHHHTHHHHHHHHHHHHHHS-GGG--S-HHHHHHHHHHHHHHG-GGCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHhcCCccc--cChhHHHHHHHHHHHHH-HhhhhhHHHHHH
Confidence 346788888888888766531 1133344444444 22221 11111 23356889999999888 567778777776
Q ss_pred HHHH----HhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccc
Q 001249 594 VLMS----LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSME 669 (1114)
Q Consensus 594 ~l~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1114)
.+.. +....+++....|....+.+..+....-+.+...=+.....+++++.
T Consensus 117 ~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~------------------------- 171 (319)
T PF08767_consen 117 AVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIV------------------------- 171 (319)
T ss_dssp HHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH-------------------------
Confidence 5543 44444433334677777777777665433332222222233333321
Q ss_pred hhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhh-------h-ccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHH
Q 001249 670 TITLGDKRIGIKTSVLEEKATACNMLCCYADELKE-------G-FFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 741 (1114)
Q Consensus 670 ~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~-------~-~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~ 741 (1114)
|+++...-+--+.++.++..+..++.. . +..|.-.++..++..+.|..|...=+.-+..|..++
T Consensus 172 --------wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 172 --------WGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp --------HHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred --------HHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 111111112234567777777776544 1 344566677777777777666555455556666655
Q ss_pred HH
Q 001249 742 RS 743 (1114)
Q Consensus 742 ~~ 743 (1114)
..
T Consensus 244 ~~ 245 (319)
T PF08767_consen 244 RL 245 (319)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 214
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=11 Score=43.51 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=80.8
Q ss_pred cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchh
Q 001249 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (1114)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 452 (1114)
+++..++.++.....+++-++|.-.+..+..+.....+.-...+..+...+...+.|..|.||-.|..+|+++-..-.+
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d- 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD- 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-
Confidence 4555666777777888999999999999999887433322356678888999999999999999999999998642221
Q ss_pred HHhhhhhhhHHHHHhhccCCCChhHHHHHHHHH
Q 001249 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (1114)
Q Consensus 453 ~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al 485 (1114)
---.+...+...+++.|+++||.+|...+
T Consensus 160 ----ee~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 160 ----EECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred ----CcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 12245566666666559999999887665
No 215
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.60 E-value=0.99 Score=51.94 Aligned_cols=114 Identities=14% Similarity=0.206 Sum_probs=78.1
Q ss_pred hHHHHHHHHHhcCCC-CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001249 415 NLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1114)
Q Consensus 415 ~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1114)
+-..++|.+...++- .+..++---+.-+..+.+..++ +...+.|+|.|...+++ .+..+|..+...+..+.+.++
T Consensus 346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~---e~~~~~IlplL~~S~~~-~~~~iQ~~~L~~lptv~e~iD 421 (700)
T KOG2137|consen 346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPP---EEVKEKILPLLYRSLED-SDVQIQELALQILPTVAESID 421 (700)
T ss_pred hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCCh---HHHHHHHHHHHHHHhcC-cchhhHHHHHHhhhHHHHhcc
Confidence 334455555555552 2333333333344445555555 45688999999999999 889999999999999998876
Q ss_pred cccccCchHHHHHHHHH-HhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 494 PEILTPYLDGIVSKLLV-LLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 494 ~~~l~~~l~~il~~L~~-~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
... .-..|+|.+.. ++.+.+..++..++.|++.+++.+.
T Consensus 422 ~~~---vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 422 VPF---VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHH---HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence 332 34456666655 4556778899999999999996554
No 216
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.38 E-value=1.1 Score=51.42 Aligned_cols=187 Identities=17% Similarity=0.152 Sum_probs=106.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchh
Q 001249 232 MMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGM 311 (1114)
Q Consensus 232 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 311 (1114)
++..+.++....|..+|..-++-+..+++...+.. .-.++++.+..-+ .+.++.+|...+.++..++..-.
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~--~~d~I~phv~~G~--~DTn~~Lre~Tlksm~~La~kL~----- 401 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQI--LNDQIFPHVALGF--LDTNATLREQTLKSMAVLAPKLS----- 401 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHh--hcchhHHHHHhhc--ccCCHHHHHHHHHHHHHHHhhhc-----
Confidence 33344444556777777766655555444332211 1235666655533 46789999999999988887310
Q ss_pred hhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCh
Q 001249 312 MRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEW 391 (1114)
Q Consensus 312 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~ 391 (1114)
.+ .+=..++.+|.....|+ ....+.-...|+..++.++.+..--..+...+...+.|+-.
T Consensus 402 ----~~---~Ln~Ellr~~ar~q~d~-------------~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~ 461 (690)
T KOG1243|consen 402 ----KR---NLNGELLRYLARLQPDE-------------HGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFV 461 (690)
T ss_pred ----hh---hhcHHHHHHHHhhCccc-------------cCcccccceeeecccccccchhhhccccchhhhhhhcCCCC
Confidence 01 12222333333221110 11122222334444443332111111122223346677888
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhh
Q 001249 392 QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL 449 (1114)
Q Consensus 392 ~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 449 (1114)
..|.+++.++....+.... ...-.+|+|.+.....|+++.||..|..++..+-..+
T Consensus 462 paR~a~v~~l~at~~~~~~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 462 PARKAGVLALAATQEYFDQ--SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred CchhhhhHHHhhcccccch--hhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 8999999999887776542 2445678899999999999999999999987766544
No 217
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=94.37 E-value=7.5 Score=45.15 Aligned_cols=145 Identities=17% Similarity=0.235 Sum_probs=89.6
Q ss_pred HHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHH
Q 001249 127 TVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAAL 206 (1114)
Q Consensus 127 ~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~ 206 (1114)
-+..|....-+.+.-..++|.|...+.+.+..+++.++.++..+.+.++..+ .-+.++|.+.+......+..|+..++
T Consensus 373 ~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~--vk~~ilP~l~~l~~~tt~~~vkvn~L 450 (700)
T KOG2137|consen 373 NMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF--VKQAILPRLKNLAFKTTNLYVKVNVL 450 (700)
T ss_pred hHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH--HHHHHHHHhhcchhcccchHHHHHHH
Confidence 3333444333323446788888888888999999999999999998876432 34567777766543334888999999
Q ss_pred HHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHh
Q 001249 207 NAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIA 281 (1114)
Q Consensus 207 ~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~ 281 (1114)
-|+..++..++. . ..++.++ .+..+.+..++......+.+...+.-..+.-..-....+++.++.+.
T Consensus 451 ~c~~~l~q~lD~---~----~v~d~~l-pi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls 517 (700)
T KOG2137|consen 451 PCLAGLIQRLDK---A----AVLDELL-PILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS 517 (700)
T ss_pred HHHHHHHHHHHH---H----HhHHHHH-HHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh
Confidence 999999977631 1 1222222 33445666788888777777666554333211111234555555443
No 218
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.26 E-value=3.5 Score=44.72 Aligned_cols=201 Identities=19% Similarity=0.213 Sum_probs=108.1
Q ss_pred CchHHHHHHHHHHccC-CCHHHHHHHHHHHHHhcccCCCCcccCC---CHHHHHHHHHHHHHHHhhchhhhHHHHHHHHH
Q 001249 53 DPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDDSFLWPRL---SLHTQSSLKSMLLQSIQLESAKSISKKLCDTV 128 (1114)
Q Consensus 53 ~p~~~~~~L~~il~~~-~~~~~R~~A~~~Lk~~l~~~~~~~w~~l---~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i 128 (1114)
+.+.+...++.+|..- .++++.++...++-.++.... .....+ ........-..+++.+.. ++..++..++.++
T Consensus 52 ~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~~a~~iL 129 (312)
T PF03224_consen 52 DGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQLKAAFIL 129 (312)
T ss_dssp ----------HHHHHH---HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHHHHHHHH
Confidence 4445566677777764 889999999999999887751 111111 111111244667776665 6999999999999
Q ss_pred HHHHhcccCCCCch---hhHHHHHHhhcC----CChhhHHHHHHHHHHhhhh--hhhhhhhhHHHHHHHHHHhh------
Q 001249 129 SELASNILPENGWP---ELLPFMFQCVSS----DSVKLQESAFLIFAQLSQY--IGDTLTPHLKHLHAVFLNCL------ 193 (1114)
Q Consensus 129 ~~ia~~~~~~~~w~---~ll~~l~~~~~~----~~~~~r~~al~~l~~l~~~--~~~~~~~~~~~l~~~l~~~l------ 193 (1114)
+.++..... ..-. +.++.+++++.+ ++.+.+..++.+|..+... ....+.. ...++.+...+
T Consensus 130 t~Ll~~~~~-~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~ 206 (312)
T PF03224_consen 130 TSLLSQGPK-RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATN 206 (312)
T ss_dssp HHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH-----
T ss_pred HHHHHcCCc-cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhccc
Confidence 999986433 2233 678888887765 3445668889999988754 2222221 44455555555
Q ss_pred cCCCChHHHHHHHHHHHHHHHhcCCcchHhHH--HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchH
Q 001249 194 TNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1114)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 264 (1114)
....+.++.+.++-|+- .-.+... ..+.+ ..++|.+++.+.. ...+.+..-++.+|..+++..++
T Consensus 207 ~~~~~~Ql~Y~~ll~lW--lLSF~~~-~~~~~~~~~~i~~L~~i~~~---~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 207 SNSSGIQLQYQALLCLW--LLSFEPE-IAEELNKKYLIPLLADILKD---SIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp ----HHHHHHHHHHHHH--HHTTSHH-HHHHHHTTSHHHHHHHHHHH-----SHHHHHHHHHHHHHTTSSSST
T ss_pred CCCCchhHHHHHHHHHH--HHhcCHH-HHHHHhccchHHHHHHHHHh---cccchHHHHHHHHHHHHHhccHH
Confidence 22224455566655543 2223211 11111 2266777776665 34678888888899888886654
No 219
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.16 E-value=2.5 Score=42.78 Aligned_cols=149 Identities=13% Similarity=0.188 Sum_probs=85.8
Q ss_pred HhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC-----CChhHHHHHHHHHHHh
Q 001249 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----QNPRVQAHAASAVLNF 488 (1114)
Q Consensus 414 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-----~~~~v~~~a~~al~~l 488 (1114)
-+++.++..+ +...+...|.+|+.+|.. ..-+.+++|.++..+++. .+..+-.........+
T Consensus 197 ~YF~kvisal---~dEs~~~~r~aAl~sLr~----------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sL 263 (450)
T COG5095 197 MYFDKVISAL---LDESDEQTRDAALESLRN----------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSL 263 (450)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHhcc----------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3445555544 445677889999888743 122345555555555431 1122223333333444
Q ss_pred hhcCCcccccCchHHHHHHHHHHhhc------C----ChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccC
Q 001249 489 SENCTPEILTPYLDGIVSKLLVLLQN------G----KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATD 558 (1114)
Q Consensus 489 ~~~~~~~~l~~~l~~il~~L~~~l~~------~----~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~ 558 (1114)
..+-. -++.||+.++||.++.++-. + ...+|.-|...++-+++..+......-+++...+.+.+-..+.
T Consensus 264 L~N~~-iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k 342 (450)
T COG5095 264 LKNKY-IFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREK 342 (450)
T ss_pred hcCCc-eeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhccc
Confidence 44432 45789999999999887632 1 1347888888888888877766555556666666655544222
Q ss_pred ccchhhhHHHHHHHHHHHHH
Q 001249 559 KSNRMLRAKSMECISLVGMA 578 (1114)
Q Consensus 559 ~~~~~lr~~a~~~l~~i~~~ 578 (1114)
. ....-.|+.|++.+...
T Consensus 343 ~--~sT~YGalkgls~l~ke 360 (450)
T COG5095 343 T--ESTQYGALKGLSILSKE 360 (450)
T ss_pred c--cchhhhhhhhhhhhchh
Confidence 1 11233467777776653
No 220
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.08 E-value=1.4 Score=46.57 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHcCCCc-------chHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCC
Q 001249 357 VGQECLDRLAIALGGNT-------IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRD 429 (1114)
Q Consensus 357 ~a~~~l~~l~~~~~~~~-------~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d 429 (1114)
.|.++.+.+.+.+|++. ..+-++|+ +....-.+|-.-+..+....-..+..+.+.++.++..+++++.|
T Consensus 74 KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl----~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLed 149 (307)
T PF04118_consen 74 KALEVYEYIFERIGPDGLAQDLPIYSPGLFPL----FSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLED 149 (307)
T ss_pred HHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccccc
Confidence 34455555555555432 22334444 33445567777777776665566667788899999999999999
Q ss_pred CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC-----------ccccc
Q 001249 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT-----------PEILT 498 (1114)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~-----------~~~l~ 498 (1114)
++..+...+...+..+...+++. .++..++..+-. ++.+|..|...+..-..... ...+.
T Consensus 150 e~sE~~~~~~~ll~~l~~~v~~~-------~F~~~lwl~ii~--sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~ 220 (307)
T PF04118_consen 150 EGSEFFDRTLKLLDKLKEAVGDK-------YFWQCLWLCIIT--SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLG 220 (307)
T ss_pred CCchHHHHHHHHHHHHHHhcChh-------HHHHHHHHHHhc--CcchhHHHHHHHHHhCCcccccccccchHHHHHhcC
Confidence 99999999999999998877763 344455555544 78888888877766544332 11233
Q ss_pred CchHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 001249 499 PYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (1114)
Q Consensus 499 ~~l~~il~~L~~~l~~~~~~v~~~al~~l~~ 529 (1114)
+--.-++..+..++++.+.-|++.+++.+-.
T Consensus 221 ~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 221 PDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred CCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 4455678888889998888888887776544
No 221
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.04 E-value=6.7 Score=40.24 Aligned_cols=194 Identities=16% Similarity=0.147 Sum_probs=108.6
Q ss_pred CChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHH
Q 001249 34 TSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQ 110 (1114)
Q Consensus 34 ~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~ 110 (1114)
.+++.....-..|.++..++- ...+..++++. +......+..+..++-++.+.+ +..-..++..+..
T Consensus 13 ~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~---------~r~f~~L~~~L~~ 82 (234)
T PF12530_consen 13 SDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN---------DRHFPFLQPLLLL 82 (234)
T ss_pred CChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC---------chHHHHHHHHHHH
Confidence 455555666666666655330 12233444443 3444555667777776665443 1111333333333
Q ss_pred ----HHh--h--chhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhh-cCCChhhHHHHHHHHHHhhhhhhhhhhhh
Q 001249 111 ----SIQ--L--ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCV-SSDSVKLQESAFLIFAQLSQYIGDTLTPH 181 (1114)
Q Consensus 111 ----~l~--~--e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~-~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 181 (1114)
... . +......-..+..+..+... .| +.|+++++.+..++ .+.++..+..+++.+..+|+.---++...
T Consensus 83 ~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~-~p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~ 160 (234)
T PF12530_consen 83 LILRIPSSFSSKDEFWECLISIAASIRDICCS-RP-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSA 160 (234)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHHHHHHHh-Ch-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 111 1 12333444445677777764 45 49999999999999 78888889999999999996543333333
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCC-cchHhHHHhhHHHHHHHHHHHHhCCCHHH
Q 001249 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS-SADRDRFQDLLPLMMRTLTESLNNGNEAT 247 (1114)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~l~p~ll~~l~~~~~~~~~~~ 247 (1114)
+..+. +-+..+..+.+ ++.+.+++..++. ..+.+.+..+...++..+.+.....+.+.
T Consensus 161 w~vl~----~~l~~~~rp~v----~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~ 219 (234)
T PF12530_consen 161 WKVLQ----KKLSLDYRPLV----LKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNV 219 (234)
T ss_pred HHHHH----HhcCCccchHH----HHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccch
Confidence 43333 33343323333 3444444444332 22345566677788888888776655433
No 222
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.02 E-value=0.23 Score=46.81 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=82.9
Q ss_pred HHhHHHHHHHHHhcCC------------------CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCC
Q 001249 413 VKNLEQVLSMVLNSFR------------------DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQN 474 (1114)
Q Consensus 413 ~~~l~~i~~~l~~~l~------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~ 474 (1114)
.++++.++|.++.... |.--.+|.+|..|+-.+.+.+...+ ....++..+..++.| +
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~---~~~~~~~~v~~GL~D--~ 78 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI---DISEFLDRVEAGLKD--E 78 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS----HHHHHHHHHHTTSS---
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHhhcCC--c
Confidence 4677888888886543 2335799999999999988766544 356779999999998 7
Q ss_pred hhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC------------ChhHHHHHHHHHHHHHHhh
Q 001249 475 PRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG------------KQMVQEGALTALASVADSS 534 (1114)
Q Consensus 475 ~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~------------~~~v~~~al~~l~~l~~~~ 534 (1114)
..++.-++..+..++...+. .+.+.++.+++.+...++.. ..+....++.++..+...+
T Consensus 79 ~DIk~L~~~~l~kl~~~~p~-~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i 149 (169)
T PF08623_consen 79 HDIKMLCHLMLSKLAQLAPE-EVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKI 149 (169)
T ss_dssp HHHHHHHHHHHHHHHHS-HH-HHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999887754 45677888888888877532 2344555666666664444
No 223
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=8.9 Score=48.80 Aligned_cols=106 Identities=14% Similarity=0.156 Sum_probs=79.4
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHH
Q 001249 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1114)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 266 (1114)
..+.+-+... ++..+..|+..+..++... +.+.....+|.......+++.+++..+|......+..+.....+.+
T Consensus 44 ~~I~kkL~Kk-D~~TK~KaL~eL~eli~~~----~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 44 DIIVKKLLKR-DETTKIKALQELSELIDTS----DTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred HHHHHHHhcc-ChHHHHHHHHhHHHhcccc----cchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445554 8899999999999988765 3344555778888888888889999999999999999999889999
Q ss_pred HHHHHHHHHHHHHHhccCCcchhHHHHHHHHHH
Q 001249 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1114)
Q Consensus 267 ~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~ 299 (1114)
.||+..++++.+-.. .+.+-.+...|...+.
T Consensus 119 sp~LK~li~~wl~~~--~d~~~~vs~aa~~sf~ 149 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQ--FDLDYPVSEAAKASFK 149 (1312)
T ss_pred hHHHHhhhhhhhhee--cccchHHHHHHHHHHH
Confidence 999999999776533 3445555555554443
No 224
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=93.97 E-value=2.4 Score=39.92 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhh-hchhhhHHHHHHhHhhhhcC--CCCHHHHHHH-HHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCC
Q 001249 860 VGEILGTLIKTFK-AAFLPFFDELSSYLTPMWGK--DKTAEERRIA-ICIFDDVAEQCREAALKYYETYLPFLLEACNDE 935 (1114)
Q Consensus 860 ~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~--~~~~~~r~~a-~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~ 935 (1114)
+.+++-.++-.+. ..|.|.|.+++.|-..-+.+ ......|..+ +.++..+.+.+...+.+|+..+++...+.|+..
T Consensus 41 v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~ 120 (153)
T PF08146_consen 41 VISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQF 120 (153)
T ss_pred HHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555 56999999999998653332 2233445555 678899999999999999999999877766542
Q ss_pred C----------hhHHhhhhHHHHHHHhhcCC
Q 001249 936 N----------QDVRQAAVYGLGVCAEFGGS 956 (1114)
Q Consensus 936 ~----------~~vr~~a~~~lg~l~~~~~~ 956 (1114)
+ ...++..+.+|..+..+..+
T Consensus 121 ~~~~~~~~~~~~~L~~~vL~~L~~~F~~D~~ 151 (153)
T PF08146_consen 121 NSSKTESKSKSWELWRLVLSTLQKCFLHDQD 151 (153)
T ss_pred hhccccchhhHHHHHHHHHHHHHHHHhhccC
Confidence 2 45566666666666665443
No 225
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.91 E-value=4.7 Score=40.91 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhh-----hcCCCCH----HHHHHHHHHHHHHHhHhhhhhhhhhHhHH
Q 001249 855 EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPM-----WGKDKTA----EERRIAICIFDDVAEQCREAALKYYETYL 925 (1114)
Q Consensus 855 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-----l~~~~~~----~~r~~a~~~l~~~~~~~~~~~~~~~~~i~ 925 (1114)
.++.++..+..++.++-.--+-||+.+++|.++.. +..+++. ..|..|..+++-++..++.......|.+.
T Consensus 251 ~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvt 330 (450)
T COG5095 251 EKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVT 330 (450)
T ss_pred HHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHH
Confidence 34555666666666543333469999988877653 3222222 26888999999999998887777788888
Q ss_pred HHHHHhccCCC--hhHHhhhhHHHHHHHhhcC
Q 001249 926 PFLLEACNDEN--QDVRQAAVYGLGVCAEFGG 955 (1114)
Q Consensus 926 ~~ll~~l~~~~--~~vr~~a~~~lg~l~~~~~ 955 (1114)
..+++.+-|.. ......|++|+..+....-
T Consensus 331 rTllKafLD~~k~~sT~YGalkgls~l~ke~i 362 (450)
T COG5095 331 RTLLKAFLDREKTESTQYGALKGLSILSKEVI 362 (450)
T ss_pred HHHHHHHHhcccccchhhhhhhhhhhhchhhe
Confidence 88888876643 5677788888888866543
No 226
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=93.74 E-value=16 Score=41.94 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=78.5
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHH
Q 001249 385 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1114)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 463 (1114)
.+.+++-.+..+++-++..++-..++.-...+. ..+..+.+.+.++.+.+|..+.|+|..+.=.............+-.
T Consensus 427 ll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a 506 (678)
T KOG1293|consen 427 LLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPA 506 (678)
T ss_pred HhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhH
Confidence 446778888888887777776554443334443 4778889999999999999999999988755555443344444444
Q ss_pred H-HHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001249 464 A-LAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1114)
Q Consensus 464 ~-l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1114)
. +....+| +++.|++.+...|.++.-++.
T Consensus 507 ~~i~~l~nd-~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 507 NLILDLIND-PDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHhhcCcH
Confidence 4 4455567 999999999999999987654
No 227
>PF05536 Neurochondrin: Neurochondrin
Probab=93.71 E-value=18 Score=42.40 Aligned_cols=180 Identities=16% Similarity=0.215 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHHHhcccCC----CCchhhHHHHHHhhcCCCh-hhHHHHHHHHHHhhhhhhhhhhhhH-HHHHHHHHH
Q 001249 118 KSISKKLCDTVSELASNILPE----NGWPELLPFMFQCVSSDSV-KLQESAFLIFAQLSQYIGDTLTPHL-KHLHAVFLN 191 (1114)
Q Consensus 118 ~~vr~~~~~~i~~ia~~~~~~----~~w~~ll~~l~~~~~~~~~-~~r~~al~~l~~l~~~~~~~~~~~~-~~l~~~l~~ 191 (1114)
...+.-+..+++.+++- |+ .+.-+-+|.+.+.+.+.+. ....-++.+|..++. .++.....+ ...++.+.+
T Consensus 71 ~~~~~LavsvL~~f~~~--~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRD--PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHHcCC--hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHH
Confidence 33445555666666552 21 2345668999999877665 778889999999983 332211111 123334444
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH------
Q 001249 192 CLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF------ 265 (1114)
Q Consensus 192 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~------ 265 (1114)
.+.+ .+.....|++.+..++...... .+......+..++..+...........+...+..|..+....+..
T Consensus 148 i~~~--~~~~~E~Al~lL~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~ 224 (543)
T PF05536_consen 148 IIPN--QSFQMEIALNLLLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPP 224 (543)
T ss_pred HHHh--CcchHHHHHHHHHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCC
Confidence 4443 3466778888888887765321 222222333445555555454445556777888888887766311
Q ss_pred HHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHh
Q 001249 266 LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1114)
Q Consensus 266 ~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1114)
-......+...+..+++++ ....-|..++.+...+.+.
T Consensus 225 ~~~W~~~l~~gl~~iL~sr-~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 225 SPKWLSDLRKGLRDILQSR-LTPSQRDPALNLAASLLDL 262 (543)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 1234556666666777654 5677788888888888775
No 228
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=0.74 Score=52.17 Aligned_cols=150 Identities=15% Similarity=0.151 Sum_probs=102.6
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHh--h---cHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHH
Q 001249 380 EQLPAYLAAPEWQKHHAALIALAQIAE--G---CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1114)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~--~---~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1114)
|.+-..++-++..+|-.|...+-.+-- + ..+.+...++.-...+...|.|+-|.||..|..-+.++...+-.-+-
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 445566777888888877766654432 1 11334445555566788899999999999887665555443322221
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001249 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1114)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~ 532 (1114)
...+..++..++..+.......||-+....|..++.+-. -.+.+..++|.+-..+++.+..||..+...+..+-.
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~---sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL---SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc---chhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 233556666666665543667899998888888776532 247788999999999999999999998888776643
No 229
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.47 E-value=0.61 Score=39.18 Aligned_cols=82 Identities=22% Similarity=0.186 Sum_probs=64.5
Q ss_pred HHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCC
Q 001249 924 YLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRD 1003 (1114)
Q Consensus 924 i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~ 1003 (1114)
.+...+..++|+.+.+|..+...|+.+++... .....++.++..+...+.+++ .-+.-||+.+++.++...|.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~D------syVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDED------SYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCC------chHHHHHHHHHHHHHHHChH
Confidence 35567788899999999999999999999876 233457889999999988763 57888999999999988765
Q ss_pred CCCHhhHHHHHHhc
Q 001249 1004 SIDAAQVVPAWLNC 1017 (1114)
Q Consensus 1004 ~~~~~~~~~~~l~~ 1017 (1114)
.+++.++..
T Consensus 77 -----~vl~~L~~~ 85 (92)
T PF10363_consen 77 -----EVLPILLDE 85 (92)
T ss_pred -----HHHHHHHHH
Confidence 355555543
No 230
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.35 E-value=0.8 Score=38.51 Aligned_cols=84 Identities=23% Similarity=0.288 Sum_probs=66.9
Q ss_pred hHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhh
Q 001249 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540 (1114)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~ 540 (1114)
.+...+..+.| +.+-+|..+...|..+++.-. ......+.++..++..++++++.|--.|+.+++.++...+..
T Consensus 4 ~~~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~--- 77 (92)
T PF10363_consen 4 TLQEALSDLND-PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE--- 77 (92)
T ss_pred HHHHHHHHccC-CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH---
Confidence 45566777888 888999999999999998765 123467889999999999999999999999999999876643
Q ss_pred hHhhhhHHHHHHHh
Q 001249 541 YYDAVMPFLKAILV 554 (1114)
Q Consensus 541 ~~~~i~~~L~~~l~ 554 (1114)
+++.|.+...
T Consensus 78 ----vl~~L~~~y~ 87 (92)
T PF10363_consen 78 ----VLPILLDEYA 87 (92)
T ss_pred ----HHHHHHHHHh
Confidence 4555555443
No 231
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.30 E-value=16 Score=40.62 Aligned_cols=166 Identities=13% Similarity=0.182 Sum_probs=97.6
Q ss_pred HHHHhHHHHHHHHHhcCCC-------CChhHHHHHHHHHHHhHhhh--chhHHhhhhhhhHHHHHhhccCCC-ChhHHHH
Q 001249 411 VMVKNLEQVLSMVLNSFRD-------PHPRVRWAAINAIGQLSTDL--GPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAH 480 (1114)
Q Consensus 411 ~~~~~l~~i~~~l~~~l~d-------~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~ 480 (1114)
.+.++++.+++.+..-+.. .+.++-..|+.+++.+.... ...+..++...++...+..+.+.. ++.+...
T Consensus 32 ~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~ 111 (372)
T PF12231_consen 32 ALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTH 111 (372)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4456666666666655543 25677888999998876432 111112233346777777776622 2344444
Q ss_pred HHHHHHHhhhcCCcccccCchHHHHHHHHHHhhc--CChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccC
Q 001249 481 AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATD 558 (1114)
Q Consensus 481 a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~ 558 (1114)
..+.|.. ..+++..+.......+-..+..+.+ ++..+-.+.+.++..+....+..+....+.-+|.+...+-..
T Consensus 112 ~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~-- 187 (372)
T PF12231_consen 112 YLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSS-- 187 (372)
T ss_pred HHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 4444432 3455554444433333333333343 456677888999999998888877766666666666555432
Q ss_pred ccchhhhHHHHHHHHHHHHHhchh
Q 001249 559 KSNRMLRAKSMECISLVGMAVGKD 582 (1114)
Q Consensus 559 ~~~~~lr~~a~~~l~~i~~~~~~~ 582 (1114)
...+|.+|+.+...+...+|++
T Consensus 188 --~k~ir~~a~~l~~~~~~~l~~~ 209 (372)
T PF12231_consen 188 --AKDIRTKAISLLLEAKKCLGPN 209 (372)
T ss_pred --chHHHHHHHHHHHHHHHHhChh
Confidence 2356777777777777777744
No 232
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=92.70 E-value=0.92 Score=49.43 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhhC--CC-ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcC---------
Q 001249 360 ECLDRLAIALGGNTIVPVASEQLPAYLA--AP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF--------- 427 (1114)
Q Consensus 360 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~--~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l--------- 427 (1114)
.+|..|...-|-..++|.+..++.+.+. .. ++..-...+....++..+..-.+.+|+..++|.++.++
T Consensus 197 ~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~ 276 (343)
T cd08050 197 EALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRP 276 (343)
T ss_pred HHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCC
Confidence 3556665544444566666666655443 12 57666677777777777666567788888998888776
Q ss_pred -CCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChh-HHHHHHHHHHHh
Q 001249 428 -RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLNF 488 (1114)
Q Consensus 428 -~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~-v~~~a~~al~~l 488 (1114)
.+.++.+|.-|+..++.++..++... ....+.++..+.+.+.|...+. ..-.|..+|..|
T Consensus 277 ~~~~h~~LRd~AA~ll~~i~~~f~~~y-~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 277 PDDNHWALRDYAARLLAQICRKFSTSY-NTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 34567999999999999999887654 3445667777777777733332 244555555444
No 233
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=92.69 E-value=3.3 Score=46.14 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=93.2
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhhC-C---CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcC--------
Q 001249 360 ECLDRLAIALGGNTIVPVASEQLPAYLA-A---PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-------- 427 (1114)
Q Consensus 360 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~---~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-------- 427 (1114)
++|..|...-|-..++|.+..++.+.+. + .+...-...+.....+..+..-.+.+|+..++|.++.++
T Consensus 226 eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~ 305 (576)
T KOG2549|consen 226 EALQSLETDSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLR 305 (576)
T ss_pred HHHHhhccCccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCC
Confidence 3444454333323344444444444332 2 234444455555556665555567789999998888765
Q ss_pred --CCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC-CChhHHHHHHHHHHHhhhcCCcccccCchHHH
Q 001249 428 --RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGI 504 (1114)
Q Consensus 428 --~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i 504 (1114)
.|.++.+|.-|+..+..++..++... ......++..+.+.+.|. ......-.+...|..|....-...+.|.+...
T Consensus 306 p~~dnhwaLRDfAA~ll~~i~k~f~~~y-~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~ 384 (576)
T KOG2549|consen 306 PELDNHWALRDFAARLLAQICKNFSTLY-NNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEY 384 (576)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHH
Confidence 35678899999999999999887655 345667778888888873 23344455555555554433233455667666
Q ss_pred HHHHHHHhhc
Q 001249 505 VSKLLVLLQN 514 (1114)
Q Consensus 505 l~~L~~~l~~ 514 (1114)
...+.+.+..
T Consensus 385 ~~~l~~~l~~ 394 (576)
T KOG2549|consen 385 NERLQSVLDV 394 (576)
T ss_pred HHHhhhhccc
Confidence 6666555443
No 234
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=92.58 E-value=4.9 Score=40.43 Aligned_cols=198 Identities=18% Similarity=0.220 Sum_probs=101.0
Q ss_pred CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHh
Q 001249 388 APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1114)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~ 467 (1114)
++.+.+|+.|-.+||++.. +.+++.+-++.+|+...||..+..++.++- +... +.. .....|. .
T Consensus 80 sq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle-~~~~-~~~--~~~~~p~--~ 143 (289)
T KOG0567|consen 80 SQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLE-WKDI-IDK--IANSSPY--I 143 (289)
T ss_pred ccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHH-Hhhc-ccc--ccccCcc--c
Confidence 5679999999999998862 245566666778999999999888887753 2211 100 0001110 0
Q ss_pred hccCCCChhHHHHHHHHHHHhhhcCCcccccCc-----h-----HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001249 468 AMDDFQNPRVQAHAASAVLNFSENCTPEILTPY-----L-----DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1114)
Q Consensus 468 ~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~-----l-----~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~ 537 (1114)
. .| |.+..-.....-+...+-.-....+..| + +.-+..+...+...+.-.|..+..++|.+-..
T Consensus 144 S-vd-Pa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~---- 217 (289)
T KOG0567|consen 144 S-VD-PAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSP---- 217 (289)
T ss_pred c-CC-CCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccch----
Confidence 1 22 2222000001111111100000001111 1 12244555555566667777777776665432
Q ss_pred hhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHH
Q 001249 538 FQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAW 617 (1114)
Q Consensus 538 ~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 617 (1114)
.-+|.|.+.|... .+...+|..|.+++|.|+. + +.++.+....+ +..+.+++.+.-++
T Consensus 218 ------~ai~~L~k~L~d~--~E~pMVRhEaAeALGaIa~----e-------~~~~vL~e~~~---D~~~vv~esc~val 275 (289)
T KOG0567|consen 218 ------AAIPSLIKVLLDE--TEHPMVRHEAAEALGAIAD----E-------DCVEVLKEYLG---DEERVVRESCEVAL 275 (289)
T ss_pred ------hhhHHHHHHHHhh--hcchHHHHHHHHHHHhhcC----H-------HHHHHHHHHcC---CcHHHHHHHHHHHH
Confidence 2356666666543 3456789999999988874 2 22333333332 22334666666666
Q ss_pred HHHHHHhccCCc
Q 001249 618 ARLCKCLGQDFL 629 (1114)
Q Consensus 618 ~~l~~~~~~~~~ 629 (1114)
...-..-++.|.
T Consensus 276 dm~eyens~~~e 287 (289)
T KOG0567|consen 276 DMLEYENSKEFE 287 (289)
T ss_pred HHHHHhcccccc
Confidence 544333444443
No 235
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=92.50 E-value=1.2 Score=48.53 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=78.8
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC-----C-ChhHHHHHHHHHHHhhhcCCcc
Q 001249 422 MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----Q-NPRVQAHAASAVLNFSENCTPE 495 (1114)
Q Consensus 422 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-----~-~~~v~~~a~~al~~l~~~~~~~ 495 (1114)
.+...+.+.+...|..|+..|.. ..-+.+++|.++..+.+. . +..+-...+..+..++.+-.-
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~t----------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l- 250 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLRT----------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL- 250 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhcc----------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC-
Confidence 33333444677788887777643 233455666666555441 0 233334455555666665432
Q ss_pred cccCchHHHHHHHHHHhh----------cCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhh
Q 001249 496 ILTPYLDGIVSKLLVLLQ----------NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1114)
Q Consensus 496 ~l~~~l~~il~~L~~~l~----------~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~ 555 (1114)
.+.+|+-.+++.++.++- +....+|+.|...++.++...+.......++++..+.+.+.+
T Consensus 251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d 320 (343)
T cd08050 251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLD 320 (343)
T ss_pred chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC
Confidence 478999999999998872 234689999999999999887765444556666666666654
No 236
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=92.38 E-value=2.6 Score=39.12 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHH
Q 001249 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1114)
Q Consensus 500 ~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1114)
.-...+..|.+-+.++++.++..|+..+..++..+|..|...+ ..++..|..++..........+|.++++.+...+.
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3467788888899999999999999999999999998886544 35777777777654433323389999999999988
Q ss_pred HhchhhhhhhHHHHHHH
Q 001249 578 AVGKDKFRDDAKQVMEV 594 (1114)
Q Consensus 578 ~~~~~~f~~~~~~i~~~ 594 (1114)
.++...-.+++..+++.
T Consensus 119 ~f~~~~~~~~i~~~y~~ 135 (140)
T PF00790_consen 119 AFKSDPELSLIQDTYKR 135 (140)
T ss_dssp HTTTSTTGHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHH
Confidence 77543333444444443
No 237
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.28 E-value=4.1 Score=43.23 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=116.3
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHh--hcHHHHHHhHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHhHhhhchhHHhhhh
Q 001249 382 LPAYLAAPEWQKHHAALIALAQIAE--GCAKVMVKNLEQVLSMVLNSFRDPHP-RVRWAAINAIGQLSTDLGPDLQNQFH 458 (1114)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~--~~~~~~~~~l~~i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1114)
+..+-...+|..--+++.-+....+ .......++-..+...+-++|+-.-| .|-..|+.+...+.+.++++-....+
T Consensus 16 L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl 95 (307)
T PF04118_consen 16 LKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDL 95 (307)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhc
Confidence 3334446678877777666666655 11112223334566777777765443 57888999999999988876656777
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001249 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1114)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~ 537 (1114)
.-..+.++..+.. ....||-.-...+..+.-.+++ .+.|.++.++-.++..+++.+.++.+.++..+..+...++..
T Consensus 96 ~i~~~GLfpl~~~-asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 96 PIYSPGLFPLFSY-ASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh
Confidence 7788888888877 6778888888888888877876 688999999999999999989999999999999999888765
No 238
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.27 E-value=48 Score=43.44 Aligned_cols=203 Identities=16% Similarity=0.153 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhh-hhhHhHHHHHHHhcc
Q 001249 855 EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAAL-KYYETYLPFLLEACN 933 (1114)
Q Consensus 855 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~-~~~~~i~~~ll~~l~ 933 (1114)
.++-.+++.++.++...++. |++..+...+.+.++...++-.|..-...+|.+.++.|.... +++..-+..++...+
T Consensus 891 ~~rc~~~ea~arLaq~v~~~--~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~ 968 (2067)
T KOG1822|consen 891 KLRCAAAEALARLAQVVGSA--PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALAT 968 (2067)
T ss_pred HHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhh
Confidence 44555778888888877754 335556666666666666676777777888888888877554 366665667777788
Q ss_pred CCC-hhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcC-CCCCChh---------hhhhHHHHHHHHHHHHhhcC
Q 001249 934 DEN-QDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRH-PNALQPE---------NLMAYDNAVSALGKICQFHR 1002 (1114)
Q Consensus 934 ~~~-~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~~~~---------~~~~~~na~~al~~l~~~~~ 1002 (1114)
|+. |.|+..+.+++..++..+++.+.-++...+-.+..++-. +....+- ....-++.+.|+|.=+.-++
T Consensus 969 Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~ 1048 (2067)
T KOG1822|consen 969 DSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNG 1048 (2067)
T ss_pred cCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCC
Confidence 865 699999999999999999998888888888888777643 3221110 01122345556655554444
Q ss_pred CCCCHhhHHHHHH---hcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhc
Q 001249 1003 DSIDAAQVVPAWL---NCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILC 1065 (1114)
Q Consensus 1003 ~~~~~~~~~~~~l---~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~~~~l~ 1065 (1114)
.......+-...+ ..+-..+|......++.++..+.- +.+-..|+..++..++..+.
T Consensus 1049 ~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhl------Fapr~~n~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1049 DKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHL------FAPRHVNLDSLVLQLCSLLS 1108 (2067)
T ss_pred cccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHh------hcchhccHHHHHHHHHHHhc
Confidence 3211111111111 122223455555667777777642 23333467788888877665
No 239
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=92.11 E-value=30 Score=40.82 Aligned_cols=364 Identities=15% Similarity=0.165 Sum_probs=177.3
Q ss_pred chh-hHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHH--HHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcC
Q 001249 141 WPE-LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKH--LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1114)
Q Consensus 141 w~~-ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (1114)
|.+ =+|..++++.+.++..+..|..-+..+|....+ ....+.+ =++.++..|.+. +.+|+..|+.++.+++-.-.
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~-ik~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNK-IKSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHH-HHHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccC
Confidence 643 267788888888888888888778888754332 2222222 245677788886 99999999999999985432
Q ss_pred CcchHhHH--HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHHHH-H--hccCCc---
Q 001249 218 SSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP---RFLRRQLVDVVGSMLQ-I--AEAESL--- 286 (1114)
Q Consensus 218 ~~~~~~~~--~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~ll~-~--~~~~~~--- 286 (1114)
.....-.+ ..=+|.+++.+.+ ..|.++++.+-.+|..|.++.. ..+..-+..+..-++. . ..+.+.
T Consensus 308 ~~~NKlai~~~~Gv~~l~~~Lr~---t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~ 384 (717)
T KOG1048|consen 308 TDSNKLAIKELNGVPTLVRLLRH---TQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRK 384 (717)
T ss_pred CcccchhhhhcCChHHHHHHHHh---hcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccc
Confidence 21111111 1235667776664 3578888888888888766511 1111222222211111 0 011111
Q ss_pred --chhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHH
Q 001249 287 --EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDR 364 (1114)
Q Consensus 287 --~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~ 364 (1114)
+.++-..+..||..+.......-..+++....+..++-.+-.......-| +. .-..+...+..
T Consensus 385 ~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d--------------~K-~VENcvCilRN 449 (717)
T KOG1048|consen 385 AEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLD--------------SK-SVENCVCILRN 449 (717)
T ss_pred cccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhcccc--------------ch-hHHHHHHHHhh
Confidence 13344455666666544211111223444445555555444333221110 00 01111222222
Q ss_pred HHHHcCCCcchHHHHHHHHHhh---CCCChhHHHHHHHHHHHHHhh----c-----HH-HHHH------hHHHHHHHHHh
Q 001249 365 LAIALGGNTIVPVASEQLPAYL---AAPEWQKHHAALIALAQIAEG----C-----AK-VMVK------NLEQVLSMVLN 425 (1114)
Q Consensus 365 l~~~~~~~~~~~~l~~~l~~~l---~~~~~~~r~aal~~l~~l~~~----~-----~~-~~~~------~l~~i~~~l~~ 425 (1114)
++-.+. .++-+...+.+...- ....+. ...-+++.-.+. + ++ ...+ .-+.++..-+.
T Consensus 450 LSYrl~-~Evp~~~~~~~~~~~~~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~ 525 (717)
T KOG1048|consen 450 LSYRLE-AEVPPKYRQVLANIARLPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLL 525 (717)
T ss_pred cCchhh-hhcCHhhhhHhhcccccccCCCcc---cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHH
Confidence 222111 111111111111000 000000 000011111110 0 00 0000 11334443333
Q ss_pred cC-CCCChhHHHHHHHHHHHhHhhhchhH---Hhh--hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc-ccc
Q 001249 426 SF-RDPHPRVRWAAINAIGQLSTDLGPDL---QNQ--FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-ILT 498 (1114)
Q Consensus 426 ~l-~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~--~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~-~l~ 498 (1114)
++ ...++.+-++++-+|..++-...... ... --+..+|.++..+.. .+.+|..+++.+|.++..+.... .+.
T Consensus 526 Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~-~~~~vv~s~a~~LrNls~d~rnk~lig 604 (717)
T KOG1048|consen 526 LLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRN-DDSDVVRSAAGALRNLSRDIRNKELIG 604 (717)
T ss_pred HHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhc-CCchHHHHHHHHHhhhccCchhhhhhh
Confidence 33 34567788888888877765433211 001 124567889999988 88999999999999998765432 222
Q ss_pred CchHHHHHHHHHHhhcCC------hhHHHHHHHHHHHHHH
Q 001249 499 PYLDGIVSKLLVLLQNGK------QMVQEGALTALASVAD 532 (1114)
Q Consensus 499 ~~l~~il~~L~~~l~~~~------~~v~~~al~~l~~l~~ 532 (1114)
...++.|..+|.+.. .++-..++.++..+..
T Consensus 605 ---k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~ 641 (717)
T KOG1048|consen 605 ---KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVR 641 (717)
T ss_pred ---cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHH
Confidence 344677777776543 3444555555555553
No 240
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.82 E-value=10 Score=45.50 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHc--CCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh-hcHH-------HHHHhHHHHHHHHHhcC
Q 001249 358 GQECLDRLAIAL--GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE-GCAK-------VMVKNLEQVLSMVLNSF 427 (1114)
Q Consensus 358 a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~-~~~~-------~~~~~l~~i~~~l~~~l 427 (1114)
+.+.+..+.... +.+.++..+++++..-...++...|..++.+++.++. .|.+ ....+++.+...+-...
T Consensus 376 a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~ 455 (574)
T smart00638 376 AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 344444444433 3334444444444332223467899999999999987 3321 12234444444444555
Q ss_pred CCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHH
Q 001249 428 RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK 507 (1114)
Q Consensus 428 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~ 507 (1114)
...+...+..++.+||.+... .....+.|.+. .-.. ....+|..|+.||..+...++.. +-+.
T Consensus 456 ~~~~~~~~~~~LkaLGN~g~~-------~~i~~l~~~l~-~~~~-~~~~iR~~Av~Alr~~a~~~p~~--------v~~~ 518 (574)
T smart00638 456 SKGDEEEIQLYLKALGNAGHP-------SSIKVLEPYLE-GAEP-LSTFIRLAAILALRNLAKRDPRK--------VQEV 518 (574)
T ss_pred hcCCchheeeHHHhhhccCCh-------hHHHHHHHhcC-CCCC-CCHHHHHHHHHHHHHHHHhCchH--------HHHH
Confidence 555666678889999887531 11222333332 1122 45789999999999887765532 2333
Q ss_pred HHHHhhc--CChhHHHHHHHHH
Q 001249 508 LLVLLQN--GKQMVQEGALTAL 527 (1114)
Q Consensus 508 L~~~l~~--~~~~v~~~al~~l 527 (1114)
+++.+.+ .+.++|-.|+..+
T Consensus 519 l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 519 LLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHcCCCCChHHHHHHHHHH
Confidence 4444443 4577887766554
No 241
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=91.30 E-value=25 Score=38.22 Aligned_cols=347 Identities=15% Similarity=0.183 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhh
Q 001249 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1114)
Q Consensus 97 ~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~ 176 (1114)
.++...++...+-+.|... .-|.. +..-. .+...+..|..+++. +...++-..+.+..++..++.....
T Consensus 79 kdd~v~yvL~li~DmLs~d---~sr~~---lf~~~-a~~~k~~~~~~fl~l----l~r~d~~iv~~~~~Ils~la~~g~~ 147 (442)
T KOG2759|consen 79 KDDTVQYVLTLIDDMLSED---RSRVD---LFHDY-AHKLKRTEWLSFLNL----LNRQDTFIVEMSFRILSKLACFGNC 147 (442)
T ss_pred hHHHHHHHHHHHHHHHhhC---chHHH---HHHHH-HHhhhccchHHHHHH----HhcCChHHHHHHHHHHHHHHHhccc
Confidence 3566666655555555532 11221 11111 122233457766554 4445666666688888887765443
Q ss_pred hhhh-hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHh--hHHHHHHHHHHHHhCCCHHHHHHHHH
Q 001249 177 TLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQD--LLPLMMRTLTESLNNGNEATAQEALE 253 (1114)
Q Consensus 177 ~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--l~p~ll~~l~~~~~~~~~~~~~~~~~ 253 (1114)
.+.. ..+-....+...+++..+...+..+++||..++..-+ .+..|.. =+..++..+. ....+.......+-
T Consensus 148 ~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e---yR~~~v~adg~~~l~~~l~--s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 148 KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE---YRYAFVIADGVSLLIRILA--STKCGFQLQYQSIF 222 (442)
T ss_pred cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc---hhheeeecCcchhhHHHHh--ccCcchhHHHHHHH
Confidence 3322 3344445555566654477888899999998886421 1111100 0011222221 12234555556666
Q ss_pred HHHHHHccchHHHHHHHH--HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhh-hc--chhhHHHHHHHHHH
Q 001249 254 LLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM-RK--LPQFINRLFAILMS 328 (1114)
Q Consensus 254 ~l~~l~~~~~~~~~~~~~--~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~--~~~~~~~l~~~l~~ 328 (1114)
|+.-+. +.+.+..++. .+++.+..++.. ...+.|-..++..+..+++. .|... ++ ..+.+..=++..++
T Consensus 223 ciWlLt--Fn~~~ae~~~~~~li~~L~~Ivk~-~~KEKV~Rivlai~~Nll~k---~~~~~~~k~~~~~mv~~~v~k~l~ 296 (442)
T KOG2759|consen 223 CIWLLT--FNPHAAEKLKRFDLIQDLSDIVKE-STKEKVTRIVLAIFRNLLDK---GPDRETKKDIASQMVLCKVLKTLQ 296 (442)
T ss_pred HHHHhh--cCHHHHHHHhhccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc---CchhhHHHHHHHHHHhcCchHHHH
Confidence 665443 2333334433 456666666643 23445555566666666662 22100 00 00111111222233
Q ss_pred hhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCC-cchHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHh
Q 001249 329 MLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN-TIVPVASEQLPAYLAA-PEWQKHHAALIALAQIAE 406 (1114)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~ 406 (1114)
.|... .|. ||| -.+-++.+.+.+... .-+...=....+..+. =+|..-+-.-.... +
T Consensus 297 ~L~~r----kys-----DED---------L~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~---e 355 (442)
T KOG2759|consen 297 SLEER----KYS-----DED---------LVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWR---E 355 (442)
T ss_pred HHHhc----CCC-----cHH---------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHH---H
Confidence 33221 222 111 011222222222100 0011111122222221 12221111000000 0
Q ss_pred hcHHHHHHhHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHhHhhhchhHH--hhhhhhhHHHHHhhccCCCChhHHHHHHH
Q 001249 407 GCAKVMVKNLEQVLSMVLNSFRDPH-PRVRWAAINAIGQLSTDLGPDLQ--NQFHPQVLPALAGAMDDFQNPRVQAHAAS 483 (1114)
Q Consensus 407 ~~~~~~~~~l~~i~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~il~~l~~~l~~~~~~~v~~~a~~ 483 (1114)
+. +.+.+.=-.++..++..|...+ |.+-..||.=+|++.++.+.... .+| +.=..+++.++. ++++||-+|..
T Consensus 356 Na-~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~--ggKe~vM~Llnh-~d~~Vry~ALl 431 (442)
T KOG2759|consen 356 NA-DRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKY--GGKERVMNLLNH-EDPEVRYHALL 431 (442)
T ss_pred hH-HHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHh--chHHHHHHHhcC-CCchHHHHHHH
Confidence 00 1122223367788888887654 88999999999999998765321 111 222456777887 89999999999
Q ss_pred HHHHhhh
Q 001249 484 AVLNFSE 490 (1114)
Q Consensus 484 al~~l~~ 490 (1114)
|+..+..
T Consensus 432 avQ~lm~ 438 (442)
T KOG2759|consen 432 AVQKLMV 438 (442)
T ss_pred HHHHHHh
Confidence 9887754
No 242
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.23 E-value=30 Score=39.08 Aligned_cols=245 Identities=14% Similarity=0.139 Sum_probs=122.0
Q ss_pred HhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhH
Q 001249 150 QCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL 229 (1114)
Q Consensus 150 ~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~ 229 (1114)
+-.+.+...+|+....++.-..+ +.|...+..++..++.+-..+ .+-...++.+..++.+... .+++. ..++
T Consensus 18 ~k~Q~s~aGhrk~~a~l~~~~t~---~~f~~~flr~vn~IL~~Kk~~---si~dRil~fl~~f~~Y~~~-~dpeg-~~~V 89 (885)
T COG5218 18 NKIQQSSAGHRKSLAELMEMLTA---HEFSEEFLRVVNTILACKKNP---SIPDRILSFLKRFFEYDMP-DDPEG-EELV 89 (885)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHH---HhhHHHHHHHHHHhhccccCC---CcHHHHHHHHHHHHHhcCC-CChhh-hHHH
Confidence 33344445555544433332221 223334444555555444443 3333455666677765321 12221 3455
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccc
Q 001249 230 PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAP 309 (1114)
Q Consensus 230 p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 309 (1114)
..++.-+...+.+++-.+|..+++++..+.....+.=......++..+...+- +-+..||..|+.++..+-+-
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~--DRE~~VR~eAv~~L~~~Qe~----- 162 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF--DREKAVRREAVKVLCYYQEM----- 162 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHhc-----
Confidence 56666666667788999999999999888766544333333444444444332 34677999998877766542
Q ss_pred hhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC
Q 001249 310 GMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP 389 (1114)
Q Consensus 310 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~ 389 (1114)
...-.+++..++-.+++. || ....++. ++-.+. . .....|.+++ ...+-
T Consensus 163 --~~neen~~~n~l~~~vqn------DP-------------S~EVRr~---allni~--v-dnsT~p~IlE----RarDv 211 (885)
T COG5218 163 --ELNEENRIVNLLKDIVQN------DP-------------SDEVRRL---ALLNIS--V-DNSTYPCILE----RARDV 211 (885)
T ss_pred --cCChHHHHHHHHHHHHhc------Cc-------------HHHHHHH---HHHHee--e-CCCcchhHHH----Hhhhh
Confidence 111123333333333321 11 0001221 121111 1 1334444433 33343
Q ss_pred ChhHH-HHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHH
Q 001249 390 EWQKH-HAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQ 444 (1114)
Q Consensus 390 ~~~~r-~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 444 (1114)
+-..| ..--.+|-.+..-+...+.+++ -.+-.++.|..-.||.++..++..
T Consensus 212 ~~anRr~vY~r~Lp~iGd~~~lsi~kri----~l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 212 SGANRRMVYERCLPRIGDLKSLSIDKRI----LLMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred hHHHHHHHHHHHhhhhcchhhcccccee----hhhhhcchhhhhhHHHHHHHHHHH
Confidence 33333 3333444444443333233322 256678899999999998887743
No 243
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=90.49 E-value=29 Score=37.65 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=84.0
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhh-------chhhhHHHHHHHHHHHHH
Q 001249 60 KLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL-------ESAKSISKKLCDTVSELA 132 (1114)
Q Consensus 60 ~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~-------e~~~~vr~~~~~~i~~ia 132 (1114)
.+++++.+...+++|.+.--+|....... --++.- .++.+...+++.+.+ +.....-+.+|+.+..+.
T Consensus 227 ~l~~ll~~~v~~d~~eM~feila~~aend----~Vkl~l-a~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll 301 (604)
T KOG4500|consen 227 MLLQLLPSMVREDIDEMIFEILAKAAEND----LVKLSL-AQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL 301 (604)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHhcCc----ceeeeh-hhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh
Confidence 34455555555666666666555554432 111111 122233444444432 112233445555555444
Q ss_pred hcccC---CCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhh----hhHHHHHHHHHH-hhcCCCChHHHHH
Q 001249 133 SNILP---ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT----PHLKHLHAVFLN-CLTNSNNPDVKIA 204 (1114)
Q Consensus 133 ~~~~~---~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~----~~~~~l~~~l~~-~l~~~~~~~vr~~ 204 (1114)
..+-. -..-|.+++++..|+.|.+.+....+..+++.+++....-+. ..++.++..+.+ --.+ .+..++++
T Consensus 302 tGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vd-gnV~~qhA 380 (604)
T KOG4500|consen 302 TGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVD-GNVERQHA 380 (604)
T ss_pred cCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCC-ccchhHHH
Confidence 32111 012377999999999999999999999999999876433221 234444444433 1123 37778888
Q ss_pred HHHHHHHHHHhc
Q 001249 205 ALNAVINFIQCL 216 (1114)
Q Consensus 205 a~~~l~~l~~~~ 216 (1114)
++.++.+++--.
T Consensus 381 ~lsALRnl~IPv 392 (604)
T KOG4500|consen 381 CLSALRNLMIPV 392 (604)
T ss_pred HHHHHHhccccC
Confidence 999998887543
No 244
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=90.45 E-value=31 Score=37.91 Aligned_cols=222 Identities=13% Similarity=0.089 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhh----h-h
Q 001249 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ----Y-I 174 (1114)
Q Consensus 100 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~----~-~ 174 (1114)
.-..+-+.+...+..|.+.........+++.-.... ....=++++..+...+++..+.+|..-+..++.++. . .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 445666778888888888888777777777666544 212336788999999999888899999999998876 1 1
Q ss_pred hhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH--h--cCCcchHh-HHHhh----HHHHHHHHHHHHhC-CC
Q 001249 175 GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ--C--LTSSADRD-RFQDL----LPLMMRTLTESLNN-GN 244 (1114)
Q Consensus 175 ~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~--~--~~~~~~~~-~~~~l----~p~ll~~l~~~~~~-~~ 244 (1114)
.....+..+.++..+.+...++ .+......+.+...++. . .+...... .+..+ =|.++-. ....+. .+
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p-~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~-~kvyskl~~ 175 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANP-LQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLS-EKVYSKLAS 175 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcC-HHHHhccCC
Confidence 2223334555555665555665 22222111111111111 0 00000000 00000 0011100 011111 24
Q ss_pred HHHHHHHHHHHHHHHccchHHHHHHH-HHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHH
Q 001249 245 EATAQEALELLIELAGTEPRFLRRQL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLF 323 (1114)
Q Consensus 245 ~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 323 (1114)
++.....++++..+.........+.. ..+-..++.++........+|..|+..+..+.. ..|.. +-..++
T Consensus 176 ~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~---~~~~~------l~~~li 246 (339)
T PF12074_consen 176 EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYA---SNPEL------LSKSLI 246 (339)
T ss_pred HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH---hChHH------HHHHHH
Confidence 55566666677666655544433322 334444444444344478899999999998877 23421 445566
Q ss_pred HHHHHhhcCC
Q 001249 324 AILMSMLLDI 333 (1114)
Q Consensus 324 ~~l~~~l~~~ 333 (1114)
..+.+++...
T Consensus 247 ~~l~~~l~~~ 256 (339)
T PF12074_consen 247 SGLWKWLSSS 256 (339)
T ss_pred HHHHHHHHhc
Confidence 7777776544
No 245
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.42 E-value=1.1 Score=42.93 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=72.5
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh---h
Q 001249 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS---S 534 (1114)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~---~ 534 (1114)
+..++|.++..|.+ .+..-+--|-..+..++...+. .+.|.++.++..|...+...+.++...++.+|..+... +
T Consensus 112 y~~yLp~F~dGL~e-~~hpyrf~A~~Gi~DLLl~~g~-kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAE-TDHPYRFVARQGITDLLLAGGE-KILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhh-cCCCcchhhhhcHHHHHHhccc-ccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 44677888888776 3333445566667777776664 46799999999999999999999999999999887654 5
Q ss_pred hhhhhhhHhhhhHHHHHH
Q 001249 535 QEHFQKYYDAVMPFLKAI 552 (1114)
Q Consensus 535 ~~~~~~~~~~i~~~L~~~ 552 (1114)
|..+.|||-+++|.+...
T Consensus 190 G~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLNTF 207 (262)
T ss_pred chhhhhHHHHhhhhhhhh
Confidence 678999999999987654
No 246
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=90.06 E-value=5.3 Score=39.45 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=53.8
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhh
Q 001249 508 LLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFR 585 (1114)
Q Consensus 508 L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~ 585 (1114)
+...++-.....-..++.+++.+....+....|++..++..+-+.-.+ +....|..+=.|+|...+++|++.|.
T Consensus 5 ~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~----~~f~~~~~~e~~lgaAi~amGpe~vL 78 (198)
T PF08161_consen 5 LESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRES----EDFSFRKELEQVLGAAIRAMGPEQVL 78 (198)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcC----CCcchHHHHHHHHHHHHHHCCHHHHH
Confidence 334444444556678899999999999988777777777766665332 22567888889999999999987654
No 247
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.02 E-value=4.2 Score=37.33 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh-hhHHHHHhhccC--CCChhHHHHHHHHHHHhhhcCC
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGAMDD--FQNPRVQAHAASAVLNFSENCT 493 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~il~~l~~~l~~--~~~~~v~~~a~~al~~l~~~~~ 493 (1114)
...+..|.+.|++++|.++..|+..|..+.+.+++.+...+.. ..+..+.+.+.. ..++.|+..+...+..+...++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4567788888999999999999999999999998877544444 555566666654 2577899999999999888776
Q ss_pred c
Q 001249 494 P 494 (1114)
Q Consensus 494 ~ 494 (1114)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 4
No 248
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=89.90 E-value=39 Score=39.97 Aligned_cols=106 Identities=17% Similarity=0.193 Sum_probs=62.2
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHH--HHHHHhcCCCCChhHHHHHHHHHHHhHhhhch---hHHhhhh
Q 001249 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQV--LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP---DLQNQFH 458 (1114)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i--~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~ 458 (1114)
.++.+++..+.-.|..-+..++-+-.+ ++..+.++ ++.++..|.+++..|+..||++|..+.-.-.. .+...+.
T Consensus 240 ~mL~~q~~~~qsnaaaylQHlcfgd~~-ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~ 318 (717)
T KOG1048|consen 240 SMLMSQDPSVQSNAAAYLQHLCFGDNK-IKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKEL 318 (717)
T ss_pred HHHhccChhhhHHHHHHHHHHHhhhHH-HHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhc
Confidence 344555555554444445545444332 33344443 67888899999999999999999998733221 1111223
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001249 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1114)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1114)
+. +|.++..+....+.+|++.+...|-++.+.
T Consensus 319 ~G-v~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 319 NG-VPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred CC-hHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 33 345555555334567777777666666544
No 249
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=89.71 E-value=4.2 Score=37.76 Aligned_cols=78 Identities=13% Similarity=0.303 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1114)
...+..|.+.+.+.+|.|...|+..|..+++.++..+.... ...++..+.+.+.+..++.|+..+...+....+.+..
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 45677888889999999999999999999999998764222 3466677777776645789999999999999887763
No 250
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.58 E-value=29 Score=42.11 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001249 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1114)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~ 260 (1114)
+.+.+...+..+.... +...+..++++|+++-.. ..++.+...+..- ......+|..|+.+|..++.
T Consensus 487 ~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~-~~~~~~~R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGK-EEVPHFIRVAAIQALRRLAK 553 (618)
T ss_dssp GTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTS-S-S-HHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhc-cccchHHHHHHHHHHHHHhh
Confidence 4445555555556665 778899999999987531 1222233222210 02256788899999988877
Q ss_pred cchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHH
Q 001249 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1114)
Q Consensus 261 ~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~ 299 (1114)
..+....+. ++.+..+...+.++|.+|+..+.
T Consensus 554 ~~~~~v~~~-------l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 554 HCPEKVREI-------LLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp T-HHHHHHH-------HHHHHH-TTS-HHHHHHHHHHHH
T ss_pred cCcHHHHHH-------HHHHhcCCCCChhHHHHHHHHHH
Confidence 776555543 34444555667889999976554
No 251
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=89.35 E-value=0.61 Score=32.27 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=26.7
Q ss_pred hHHHHHHHhccCCChhHHhhhhHHHHHHH
Q 001249 923 TYLPFLLEACNDENQDVRQAAVYGLGVCA 951 (1114)
Q Consensus 923 ~i~~~ll~~l~~~~~~vr~~a~~~lg~l~ 951 (1114)
..+|.+++.+.++++.++..|+++|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999999999986
No 252
>PF05536 Neurochondrin: Neurochondrin
Probab=89.29 E-value=51 Score=38.69 Aligned_cols=237 Identities=14% Similarity=0.133 Sum_probs=125.9
Q ss_pred hhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhh---hhhhHHH----HHHHHHHhhcCC---CChHHHHHHHHHHHH
Q 001249 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT---LTPHLKH----LHAVFLNCLTNS---NNPDVKIAALNAVIN 211 (1114)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~---~~~~~~~----l~~~l~~~l~~~---~~~~vr~~a~~~l~~ 211 (1114)
++-+.....++++.+...|-.|+..+..+++..+.. -+..++. ++..++..-..+ +....+..|+..+..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 345677778888888888999999999998753321 0111222 223333222221 123455666666665
Q ss_pred HHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCCcchhH
Q 001249 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGT 290 (1114)
Q Consensus 212 l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~~~~~v 290 (1114)
+.. .++....+.+...+|.+++.+.. ..+......++++|..++. +++--...+. ..++.+.+++.+ ....
T Consensus 84 f~~-~~~~a~~~~~~~~IP~Lle~l~~---~s~~~~v~dalqcL~~Ias-~~~G~~aLl~~g~v~~L~ei~~~---~~~~ 155 (543)
T PF05536_consen 84 FCR-DPELASSPQMVSRIPLLLEILSS---SSDLETVDDALQCLLAIAS-SPEGAKALLESGAVPALCEIIPN---QSFQ 155 (543)
T ss_pred HcC-ChhhhcCHHHHHHHHHHHHHHHc---CCchhHHHHHHHHHHHHHc-CcHhHHHHHhcCCHHHHHHHHHh---Ccch
Confidence 554 22211234566778888887663 2234788899999999984 3332222211 344444555433 3445
Q ss_pred HHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcC
Q 001249 291 RHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG 370 (1114)
Q Consensus 291 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~ 370 (1114)
...|+..|..++.... .....+....+..+++.+-..+....+ ..+.+.+..++..+.
T Consensus 156 ~E~Al~lL~~Lls~~~--~~~~~~~~~~l~~il~~La~~fs~~~~--------------------~~kfell~~L~~~L~ 213 (543)
T PF05536_consen 156 MEIALNLLLNLLSRLG--QKSWAEDSQLLHSILPSLARDFSSFHG--------------------EDKFELLEFLSAFLP 213 (543)
T ss_pred HHHHHHHHHHHHHhcc--hhhhhhhHHHHHHHHHHHHHHHHhhcc--------------------chHHHHHHHHHHhcC
Confidence 6778888888776311 111122233444555554443332211 123344555554443
Q ss_pred CC-----------cchHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHhhc
Q 001249 371 GN-----------TIVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGC 408 (1114)
Q Consensus 371 ~~-----------~~~~~l~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~ 408 (1114)
.. ...+.+...+...+++ .....|..++...+.+.+..
T Consensus 214 ~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 214 RSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred cCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 22 2333455555555554 35677777777777776643
No 253
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.26 E-value=29 Score=42.08 Aligned_cols=128 Identities=16% Similarity=0.234 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHhcccCCC---------CcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC
Q 001249 69 PHPEARAMAAVLLRKLLTRDDS---------FLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN 139 (1114)
Q Consensus 69 ~~~~~R~~A~~~Lk~~l~~~~~---------~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~ 139 (1114)
..+.+|..|.+-+..++.+... .....+.......+...+-++... .+..-+..+..+||.+..
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~LkaLgN~g~------ 519 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSR-GDEEEKIVYLKALGNLGH------ 519 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHT-------
T ss_pred CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhc-cCHHHHHHHHHHhhccCC------
Confidence 4567788787777777665311 113344455555555554444443 456666777778877632
Q ss_pred CchhhHHHHHHhhcCC---ChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 001249 140 GWPELLPFMFQCVSSD---SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN 211 (1114)
Q Consensus 140 ~w~~ll~~l~~~~~~~---~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 211 (1114)
|..++.+...+.+. ...+|..|+.+|..+....++.. .+.+++++.+ ...+.++|.+|+..+..
T Consensus 520 --~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v---~~~l~~I~~n---~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 520 --PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV---REILLPIFMN---TTEDPEVRIAAYLILMR 586 (618)
T ss_dssp --GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH---HHHHHHHHH----TTS-HHHHHHHHHHHHH
T ss_pred --chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH---HHHHHHHhcC---CCCChhHHHHHHHHHHh
Confidence 57788888877665 56889999999998876665542 2334444432 22367899999866643
No 254
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.97 E-value=49 Score=41.83 Aligned_cols=232 Identities=16% Similarity=0.242 Sum_probs=123.1
Q ss_pred CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHccchHHH-HHHHHH
Q 001249 197 NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG---NEATAQEALELLIELAGTEPRFL-RRQLVD 272 (1114)
Q Consensus 197 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~ 272 (1114)
+..+||...++++.++++... ...+.. ++.+++.+......+ .-+....++.+|.-+....-..+ ...+..
T Consensus 854 ~~~evr~~sl~~l~silet~g----e~ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVG----EHLLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccc----hhhccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 378899999999999998742 223334 677777777655444 33556667777765544321111 233445
Q ss_pred HHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhc-cchhhh---------------cchhhH-HHHHHHHHHhhcCCCC
Q 001249 273 VVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER-APGMMR---------------KLPQFI-NRLFAILMSMLLDIED 335 (1114)
Q Consensus 273 l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~---------------~~~~~~-~~l~~~l~~~l~~~~~ 335 (1114)
+++.+......+ .|-.+-..|+..+-++...-.+ .-+... +....+ +.+.-.++.++.+..+
T Consensus 929 lidtl~~fs~Qk-tdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen 929 LIDTLLVFSRQK-TDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred HHHHHHHHHhhh-ccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence 555555544332 3555666666655554442100 000000 000011 2233344444444332
Q ss_pred CcccccCCCCCccccCCCchhhHHHHHHHHHHHcC----CCc----chHHHHHHHHHh-hC-CCChhHH-------HHHH
Q 001249 336 DPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG----GNT----IVPVASEQLPAY-LA-APEWQKH-------HAAL 398 (1114)
Q Consensus 336 ~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~----~~~----~~~~l~~~l~~~-l~-~~~~~~r-------~aal 398 (1114)
|+ -...++-|.+++-++...-| +.. +...++|.+... .+ -.+|..+ +..+
T Consensus 1008 ds-------------r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ 1074 (1610)
T KOG1848|consen 1008 DS-------------RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSC 1074 (1610)
T ss_pred cc-------------hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhh
Confidence 21 12345667777777655443 211 223344444311 11 1245443 3567
Q ss_pred HHHHHHHhhcHHHHH---------HhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHh
Q 001249 399 IALAQIAEGCAKVMV---------KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1114)
Q Consensus 399 ~~l~~l~~~~~~~~~---------~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1114)
..++.+++-.++.+. +....++.++.....+.++.+.-++..++..+..
T Consensus 1075 ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1075 LTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred hhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 778877776555433 2234567777778889999999999888876653
No 255
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=88.72 E-value=3.1 Score=35.97 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=55.3
Q ss_pred HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccC
Q 001249 410 KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1114)
Q Consensus 410 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~ 471 (1114)
+.+.++++.++.++..++.+-.+.||..++..|.-+.+.+++.....+...+++..+..+..
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 45778999999999999999999999999999999999999884468888999999888876
No 256
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.71 E-value=13 Score=40.21 Aligned_cols=107 Identities=12% Similarity=0.148 Sum_probs=62.7
Q ss_pred CCChhhHHHHHHHHHHhhhhhhhh---hhhhH----HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHH
Q 001249 154 SDSVKLQESAFLIFAQLSQYIGDT---LTPHL----KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQ 226 (1114)
Q Consensus 154 ~~~~~~r~~al~~l~~l~~~~~~~---~~~~~----~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 226 (1114)
+++.+..+..+..+..++...+.. +.... ......|.+.+..+ +..++..|+..+..++..-+.... ....
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~-~~~~ 145 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSE-KLVK 145 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--H-HHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCcccc-chHH
Confidence 566777788888888887765422 11111 11445566677776 999999999999999987543222 1124
Q ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc
Q 001249 227 DLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1114)
Q Consensus 227 ~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 262 (1114)
+.++.+++.+...+++.+.+....++.++..+....
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~ 181 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK 181 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc
Confidence 566777777776444444556688889999988644
No 257
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=88.63 E-value=0.79 Score=31.70 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhH
Q 001249 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1114)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1114)
..+|.++..|.++++.+|..|+|+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36889999999999999999999999886
No 258
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=88.59 E-value=68 Score=39.22 Aligned_cols=138 Identities=16% Similarity=0.152 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHhhhhhhhh---hhh--hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHH
Q 001249 158 KLQESAFLIFAQLSQYIGDT---LTP--HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLM 232 (1114)
Q Consensus 158 ~~r~~al~~l~~l~~~~~~~---~~~--~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~l 232 (1114)
...+.++.+|..+....++- |.. ..-..++.+...+....++++...+++.+..+..+-+. .+....- ..
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~C---v~~~a~~--~v 1814 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKEC---VTDLATC--NV 1814 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHH---HHHHHhh--hH
Confidence 35577888898888776532 211 12233455555565444778888888888766554321 1111110 23
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHH-HHHHHHHHhccCCcchhHHHHHHHHHHHHHH
Q 001249 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVD-VVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1114)
Q Consensus 233 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1114)
+..+.+.+. ..|..|..++..|..+..+ ++....-+.. -+..++.+.- ....+..|.++.+.+..+.-
T Consensus 1815 L~~LL~lLH-S~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c-~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1815 LTTLLTLLH-SQPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILC-LTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHHHHHHh-cChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHh-ccCcHHHHHHHHHHHHHhhh
Confidence 444444443 3688899999999888754 3333222211 0111111111 12356677777777776654
No 259
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=88.13 E-value=32 Score=34.92 Aligned_cols=112 Identities=22% Similarity=0.330 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhcc
Q 001249 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMD 470 (1114)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~ 470 (1114)
-..|+.|++.|..+.. ..-+..+..++.+++...|..+.+++|++-. +.-+|.+.+.|.
T Consensus 170 l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~ 228 (289)
T KOG0567|consen 170 LFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLL 228 (289)
T ss_pred HHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHH
Confidence 4456677766665422 2345566778888899999999999988743 233444555554
Q ss_pred CC-CChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhh
Q 001249 471 DF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1114)
Q Consensus 471 ~~-~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~ 534 (1114)
+. .++-||..|..||+.+.. +..++.|...+.++.+-|++.+..++...-..-
T Consensus 229 d~~E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~~D~~~vv~esc~valdm~eyen 282 (289)
T KOG0567|consen 229 DETEHPMVRHEAAEALGAIAD-----------EDCVEVLKEYLGDEERVVRESCEVALDMLEYEN 282 (289)
T ss_pred hhhcchHHHHHHHHHHHhhcC-----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 42 467889999999887643 234566777788888888888777776655433
No 260
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=87.90 E-value=5.1 Score=37.15 Aligned_cols=79 Identities=9% Similarity=0.188 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1114)
...+..+.+.|++.+|.+...|+..|..+.+.++..+...+ -..++..+.+.+.+..++.|+..+...+......+..+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 35667778888999999999999999999999987664322 34566666666654368899999999999998887643
No 261
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.18 E-value=6.5 Score=36.50 Aligned_cols=94 Identities=15% Similarity=0.172 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhcCCC-CC
Q 001249 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFRD-PH 431 (1114)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~d-~~ 431 (1114)
|....+..+.+... ..--...+..+...+.+.++++..-|+..+..++++|+..+...+. .++..+.+.+.+ .+
T Consensus 18 w~~il~icD~I~~~---~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~ 94 (144)
T cd03568 18 WGLILDVCDKVKSD---ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVH 94 (144)
T ss_pred HHHHHHHHHHHhcC---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCC
Confidence 44445555555432 1222345666777788899999999999999999999986665543 566777777776 78
Q ss_pred hhHHHHHHHHHHHhHhhhch
Q 001249 432 PRVRWAAINAIGQLSTDLGP 451 (1114)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~ 451 (1114)
+.|+..++..+...++.++.
T Consensus 95 ~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 95 PTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999888764
No 262
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=86.89 E-value=4.2 Score=38.22 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=63.8
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcH----------------HHHHHhHHHHHHHHHhcCCCCC----hhHH
Q 001249 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA----------------KVMVKNLEQVLSMVLNSFRDPH----PRVR 435 (1114)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~----------------~~~~~~l~~i~~~l~~~l~d~~----~~vr 435 (1114)
|.+++.+.+.+++ +...+..++..|..+.+... +.+....+.+++.+.+.+.... ..+.
T Consensus 25 p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~ 103 (148)
T PF08389_consen 25 PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELV 103 (148)
T ss_dssp TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHH
T ss_pred chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3344444444433 35555566666665554322 1233445566666666665433 7889
Q ss_pred HHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHH
Q 001249 436 WAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (1114)
Q Consensus 436 ~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al 485 (1114)
..++.+++.+..+.+.... .-..+++.+++.+.+ +..+..|+.+|
T Consensus 104 ~~~L~~l~s~i~~~~~~~i--~~~~~l~~~~~~l~~---~~~~~~A~~cl 148 (148)
T PF08389_consen 104 KAALKCLKSWISWIPIELI--INSNLLNLIFQLLQS---PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHTTTS-HHHH--HSSSHHHHHHHHTTS---CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHh--ccHHHHHHHHHHcCC---HHHHHHHHHhC
Confidence 9999999999998766542 234599999999966 45578887764
No 263
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.06 E-value=68 Score=36.49 Aligned_cols=151 Identities=11% Similarity=0.153 Sum_probs=84.6
Q ss_pred CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCC-ChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHH
Q 001249 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 508 (1114)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L 508 (1114)
+.++.-++++..+..++....+.- +.++|.+++.+-+-+ ...+|..++..++.+.+-.... ...+..++..+
T Consensus 401 ~~We~~EAaLF~l~~~~~~~~~~e-----~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~--p~~le~v~~~~ 473 (559)
T KOG2081|consen 401 ASWEEVEAALFILRAVAKNVSPEE-----NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQH--PELLEPVLRYI 473 (559)
T ss_pred CchHHHHHHHHHHHHHhccCCccc-----cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHH
Confidence 456677788888888877765543 455555555443311 1238888888888887755422 12344455555
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhH
Q 001249 509 LVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA 588 (1114)
Q Consensus 509 ~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~ 588 (1114)
...++... ....+..++..++..+...+.+.++.+...+........+.+... .+..++.+....+..+..+.+
T Consensus 474 ~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~e~a~----l~~~~s~i~~~lp~~k~~~~~ 547 (559)
T KOG2081|consen 474 RQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINEEAAC----LLQGISLIISNLPAHKAKIAL 547 (559)
T ss_pred HHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccHHHHH----HHHHHHHHHhcCCHhhhhHHH
Confidence 55555443 555666677777777776666555555554444333222221111 344455555555555555555
Q ss_pred HHHHH
Q 001249 589 KQVME 593 (1114)
Q Consensus 589 ~~i~~ 593 (1114)
+++..
T Consensus 548 ~el~~ 552 (559)
T KOG2081|consen 548 EELCE 552 (559)
T ss_pred HHHhh
Confidence 55544
No 264
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=85.95 E-value=61 Score=35.88 Aligned_cols=149 Identities=15% Similarity=0.171 Sum_probs=95.2
Q ss_pred CchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhh--hh-hhHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHh
Q 001249 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT--LT-PHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQC 215 (1114)
Q Consensus 140 ~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~--~~-~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~ 215 (1114)
.|..+.+.+...+-+++..+|.+|++++.+++.+...- +. -+++. ++..+|..+ ....-|..|++.+..+++.
T Consensus 22 ~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~---~ii~SL~~~~~~~~ER~QALkliR~~l~~ 98 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDI---FIIRSLDRDNKNDVEREQALKLIRAFLEI 98 (371)
T ss_pred hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCch---hhHhhhcccCCChHHHHHHHHHHHHHHHh
Confidence 68888888887666666999999999999988764321 11 12222 334445433 2445699999999999986
Q ss_pred cCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHH--HHHHHHHHHHHHhccCCcchhHHHH
Q 001249 216 LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAESLEEGTRHL 293 (1114)
Q Consensus 216 ~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~l~~~ll~~~~~~~~~~~vr~~ 293 (1114)
-.+ .+ .+=..+++.+....++.++..+..|++.+.+++-..|+.+.. -+..++..+.. . .-++...
T Consensus 99 ~~~---~~---~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d----~--~~~~~~~ 166 (371)
T PF14664_consen 99 KKG---PK---EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID----G--SFSISES 166 (371)
T ss_pred cCC---cc---cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh----c--cHhHHHH
Confidence 321 11 112257778888888888899999999999999888776532 23344443332 1 1124445
Q ss_pred HHHHHHHHHH
Q 001249 294 AIEFVITLAE 303 (1114)
Q Consensus 294 a~~~l~~l~~ 303 (1114)
.+..+..+..
T Consensus 167 l~~~lL~lLd 176 (371)
T PF14664_consen 167 LLDTLLYLLD 176 (371)
T ss_pred HHHHHHHHhC
Confidence 5555555555
No 265
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.89 E-value=41 Score=33.76 Aligned_cols=70 Identities=10% Similarity=0.080 Sum_probs=52.5
Q ss_pred HHHHHHhhc-CCChhhHHHHHHHHHHhhhhhhhhhhhh--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001249 145 LPFMFQCVS-SDSVKLQESAFLIFAQLSQYIGDTLTPH--LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1114)
Q Consensus 145 l~~l~~~~~-~~~~~~r~~al~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1114)
.|++..... .+.+-.|-.++-+++.+.+.....+..+ ..+++|.+++.+..+ +..-+..|...+..++..
T Consensus 126 YpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G-SelSKtvA~fIlqKIlld 198 (293)
T KOG3036|consen 126 YPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG-SELSKTVATFILQKILLD 198 (293)
T ss_pred HHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc-cHHHHHHHHHHHHHHhhc
Confidence 355544433 3567899999999999998866554333 356899999999987 888888888888888754
No 266
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=85.40 E-value=18 Score=33.21 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHH
Q 001249 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1114)
Q Consensus 501 l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1114)
-...+..|.+-++++++.++-.|+..+..++..+|..|...+ ..++..|..++....+ ...++.++++.+...+.+
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~--~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP--LPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHHHHHH
Confidence 456678888888899999999999999999999998876433 3467777776654322 223889999999888877
Q ss_pred hc
Q 001249 579 VG 580 (1114)
Q Consensus 579 ~~ 580 (1114)
+.
T Consensus 113 f~ 114 (133)
T smart00288 113 FK 114 (133)
T ss_pred Hc
Confidence 75
No 267
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.32 E-value=9.6 Score=35.38 Aligned_cols=79 Identities=13% Similarity=0.270 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccCCCChh---HHHHHHHHHHHhhhc
Q 001249 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPR---VQAHAASAVLNFSEN 491 (1114)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~---v~~~a~~al~~l~~~ 491 (1114)
-...+..|.+.|.+.+|.++..|+..|..+.+.+++.+.... -..++..+.+.+.+.+... |+..+...+..+...
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 356778888899999999999999999999999988774332 3346666666555423332 899999999998888
Q ss_pred CCc
Q 001249 492 CTP 494 (1114)
Q Consensus 492 ~~~ 494 (1114)
+..
T Consensus 120 f~~ 122 (140)
T PF00790_consen 120 FKS 122 (140)
T ss_dssp TTT
T ss_pred HCC
Confidence 753
No 268
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=85.27 E-value=51 Score=34.38 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=42.0
Q ss_pred HHHhhCCCChh-HHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhH
Q 001249 382 LPAYLAAPEWQ-KHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1114)
Q Consensus 382 l~~~l~~~~~~-~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1114)
+..++++.++. .-..|+.-++++++..|+...-... ..-..++..+++++++||..|+.++..+.
T Consensus 361 L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 361 LKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 33444443332 2346777788888877764332222 23456778899999999999998886654
No 269
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.98 E-value=95 Score=37.22 Aligned_cols=150 Identities=20% Similarity=0.179 Sum_probs=84.6
Q ss_pred hhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcch
Q 001249 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1114)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 221 (1114)
+.-+.++.+++.+...... .+..++..++.....--.+.++.+..++..--.. ....+|..|+-+++.++........
T Consensus 356 ~~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~-~~~~l~~sa~l~~~~lv~~~c~~~~ 433 (574)
T smart00638 356 PPALKFIKQWIKNKKITPL-EAAQLLAVLPHTARYPTEEILKALFELAESPEVQ-KQPYLRESALLAYGSLVRRYCVNTP 433 (574)
T ss_pred HHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCcccc-ccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5567777777776543221 2333333333332211112344444333322122 3678999999999999875432111
Q ss_pred ---HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHh-ccCCcchhHHHHHHHH
Q 001249 222 ---RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIA-EAESLEEGTRHLAIEF 297 (1114)
Q Consensus 222 ---~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~-~~~~~~~~vr~~a~~~ 297 (1114)
......++|.+.+.+..+.+..+.+.+..++.+|+.+... ..+..+...+ ++...+..+|..|+..
T Consensus 434 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~A 503 (574)
T smart00638 434 SCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILA 503 (574)
T ss_pred CCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 1223567777777777777666777777778888766431 1111111111 3445567899999999
Q ss_pred HHHHHH
Q 001249 298 VITLAE 303 (1114)
Q Consensus 298 l~~l~~ 303 (1114)
+..+++
T Consensus 504 lr~~a~ 509 (574)
T smart00638 504 LRNLAK 509 (574)
T ss_pred HHHHHH
Confidence 988876
No 270
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=84.93 E-value=15 Score=33.84 Aligned_cols=76 Identities=8% Similarity=0.196 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccC-----CCChhHHHHHHHHHHHhhhc
Q 001249 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDD-----FQNPRVQAHAASAVLNFSEN 491 (1114)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~-----~~~~~v~~~a~~al~~l~~~ 491 (1114)
..+..+.+.+++++|.+...|+..|..+.+.++..+.... ...++..+.+.+.. ..+..|+..+...+....+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4667788889999999999999999999999998774333 24556666666642 24678999999999998887
Q ss_pred CC
Q 001249 492 CT 493 (1114)
Q Consensus 492 ~~ 493 (1114)
++
T Consensus 118 f~ 119 (139)
T cd03567 118 LP 119 (139)
T ss_pred hc
Confidence 75
No 271
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.92 E-value=27 Score=34.36 Aligned_cols=65 Identities=25% Similarity=0.357 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhhhc---CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccC
Q 001249 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRD 88 (1114)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~---~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~ 88 (1114)
-+..+|+...+++..+|..|-+.+....++ +|-.++++|+.+.+ ++++.+|..|-.+++..-.++
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~t-s~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALET-SPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhC-CCChHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999998876655 89888898888664 689999999999999987775
No 272
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=84.30 E-value=1.2e+02 Score=37.65 Aligned_cols=150 Identities=13% Similarity=0.132 Sum_probs=83.3
Q ss_pred HHHHHHHHHcc----CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHH
Q 001249 57 LTLKLAHLLQR----SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELA 132 (1114)
Q Consensus 57 ~~~~L~~il~~----~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia 132 (1114)
....+.++|.+ ..++.+|..=-..++....+.. +. +. ..+...+...|.+ +++..|+-+...+..+.
T Consensus 78 ~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~---~~-~~----~~~lPG~~~~Lf~-~~~~~r~WA~~~~~~l~ 148 (727)
T PF12726_consen 78 LLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKP---LK-LP----KELLPGMTYFLFD-GNPERRRWAERWWQRLK 148 (727)
T ss_pred HHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCC---cc-cc----ccccchhhhhhhc-CCHHHHHHHHHHHHHcC
Confidence 45667788875 4456677765666776665431 11 11 2233445555665 58899999999999887
Q ss_pred hcc--cCCCCch-----hhHHHHHHhhcCC--ChhhHHHHHHHHHHhhhhhhhh-hhhhHHH-----HHHHHHHhhcCCC
Q 001249 133 SNI--LPENGWP-----ELLPFMFQCVSSD--SVKLQESAFLIFAQLSQYIGDT-LTPHLKH-----LHAVFLNCLTNSN 197 (1114)
Q Consensus 133 ~~~--~~~~~w~-----~ll~~l~~~~~~~--~~~~r~~al~~l~~l~~~~~~~-~~~~~~~-----l~~~l~~~l~~~~ 197 (1114)
+.. +....|. ++...+... +.+ ++.....-=..+..|.+.++.+ +..++.. ++.++.+.|.+.
T Consensus 149 ~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~- 226 (727)
T PF12726_consen 149 RPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSN- 226 (727)
T ss_pred CCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcc-
Confidence 642 3334443 233333333 221 2222222223344444443332 2222222 677788888875
Q ss_pred ChHHHHHHHHHHHHHHHhcC
Q 001249 198 NPDVKIAALNAVINFIQCLT 217 (1114)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~ 217 (1114)
........++++..+++..+
T Consensus 227 ~~~~l~~lL~~l~~lL~k~~ 246 (727)
T PF12726_consen 227 LSPPLPILLRCLSILLEKLG 246 (727)
T ss_pred cchhHHHHHHHHHHHHHhCH
Confidence 45666778888988888764
No 273
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.25 E-value=4.6 Score=35.59 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhhhH--hHHHHHHHhccCCChhHHhhhhHHHHHHHhh
Q 001249 896 AEERRIAICIFDDVAEQCREAALKYYE--TYLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1114)
Q Consensus 896 ~~~r~~a~~~l~~~~~~~~~~~~~~~~--~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1114)
+.....|+.=+|+++++.+.. ...+. ..-..+++.+.++|++||..|..|+..+..+
T Consensus 58 ~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 58 PTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred cceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 334455666788888887553 22222 2345678889999999999999999998754
No 274
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=84.09 E-value=9 Score=31.85 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001249 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (1114)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~ 256 (1114)
-..++..|...+.+..+.++|...++|+..++..- .+.+..=|+.++.++.....+++++....|++++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~-----~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSR-----GENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh-----HHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34566666666555458899999999999999864 23345557788899888888878888888887764
No 275
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.76 E-value=4.2 Score=35.79 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=48.8
Q ss_pred HHHHHHHhcC-CCCChhHHHHHHHHHHHhHhhhchhHHhhhh--hhhHHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001249 418 QVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1114)
Q Consensus 418 ~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1114)
.++..+...| .+.++.+...||.=||.+++..+... ..+ -..=..+++.+.+ ++++||..|..++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr--~ii~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR--NIIEKLGAKERVMELMNH-EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH--HHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH--HHHHhcChHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 3455555555 34477888889999999999875432 222 2345667788888 899999999999987753
No 276
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=83.73 E-value=1.1e+02 Score=36.98 Aligned_cols=97 Identities=16% Similarity=0.233 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 001249 690 TACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFII 769 (1114)
Q Consensus 690 ~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 769 (1114)
.|+.+...+..+|++.+..|+...+..+.++++.. +++++..++.++..++.... ..+.+... ++.++
T Consensus 75 Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~-~~~~~ilg~~sf~~F~~i~~----------d~~sy~~~-yd~Fi 142 (819)
T KOG1877|consen 75 IAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESN-NDEMQILGTNSFVKFANIEE----------DGPSYHRN-YDFFI 142 (819)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCceeeehhhHHHHHHhhcc----------cCchhhhh-hHHHH
Confidence 46678889999999999888999999999999987 88999999998877765431 12233333 56777
Q ss_pred HHHHHHHccCCcHH----HHHHHHHHHHHHHHH
Q 001249 770 PALVEALHKEPDTE----ICASMLDSLNECIQI 798 (1114)
Q Consensus 770 ~~l~~~~~~~~~~~----~~~~~l~~l~~~l~~ 798 (1114)
+++.+...+.++.+ ++.+.+.++..++..
T Consensus 143 ~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~ 175 (819)
T KOG1877|consen 143 SKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWL 175 (819)
T ss_pred HHHHHHhhcccchhhhhhccHhhhhhHHHHHHH
Confidence 77777776644433 344556666665544
No 277
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=83.68 E-value=12 Score=38.22 Aligned_cols=136 Identities=9% Similarity=0.088 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhhchhhhHHH-----HHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhh--HhHHHHHHHh
Q 001249 859 QVGEILGTLIKTFKAAFLPFFDE-----LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYY--ETYLPFLLEA 931 (1114)
Q Consensus 859 ~~~~~l~~l~~~~~~~~~~~~~~-----l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~--~~i~~~ll~~ 931 (1114)
.+..++..++. +++.=.+++.. +.|++....+..+-+..|-.+++++|.+++.-...+..|+ .+++|..++.
T Consensus 69 naLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 69 NALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 35556666665 44443444443 3444422211111245688999999999997766666653 5899999999
Q ss_pred ccCCChhHHhhhhHHHHHHHhhcCC-----CchHH---HHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhh
Q 001249 932 CNDENQDVRQAAVYGLGVCAEFGGS-----VVKPL---VGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQF 1000 (1114)
Q Consensus 932 l~~~~~~vr~~a~~~lg~l~~~~~~-----~~~~~---~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~ 1000 (1114)
++.++.-.|..|.+-+..+...... .-... +..++..+...+.... ....-..++.|--|+..+
T Consensus 148 me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~p-----S~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 148 MEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQP-----SPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS-------HHHHHHHHHHHHHHTTS
T ss_pred HHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCC-----ChhHHHHHHHHHHHHccC
Confidence 9999988999999988777654321 11112 2334444443332221 356777888888777543
No 278
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=83.63 E-value=11 Score=34.49 Aligned_cols=78 Identities=9% Similarity=0.195 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccCCCChh-HHHHHHHHHHHhhhcCCc
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPR-VQAHAASAVLNFSENCTP 494 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~-v~~~a~~al~~l~~~~~~ 494 (1114)
...+..+.+.|++++|.+...|+..|..+.+.++..+...+ ...++..+.+.+.+..... |+..+...+......+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 34567788889999999999999999999999988774333 3456777777766633333 999999999888887753
No 279
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=83.14 E-value=3.9 Score=35.35 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=55.6
Q ss_pred cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh-hhhhHhhhhHHHHHHHhhc
Q 001249 494 PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH-FQKYYDAVMPFLKAILVNA 556 (1114)
Q Consensus 494 ~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~-~~~~~~~i~~~L~~~l~~~ 556 (1114)
++.+.||++.++..+...+.+-.+.||..++..+..+.+.+++. +..+...+++.....+...
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 34578999999999999999999999999999999999999988 6678888888888887654
No 280
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=82.97 E-value=17 Score=32.67 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=54.2
Q ss_pred cchHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhh
Q 001249 373 TIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1114)
Q Consensus 373 ~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1114)
.+++.++|++...+. +.....|-++++.++.++...+ .-.+.+..++..+......... ...+..++..++..
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 567889999999998 7788999999999999998654 1124556667777666665555 46677788887744
No 281
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=82.63 E-value=82 Score=34.65 Aligned_cols=195 Identities=15% Similarity=0.127 Sum_probs=104.3
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCCChhHHhhhhHHHHHHHh----hcC-C
Q 001249 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAE----FGG-S 956 (1114)
Q Consensus 882 l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~----~~~-~ 956 (1114)
++..+.+++.+..++.....++.+|+.-+..++. ..-+.++..+.+++.+..+.+|+.-+.++|.+.. ... .
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~---~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFLSS---ELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc---CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 4444444455555666666667777666555522 2346788899999999999999999999999987 211 2
Q ss_pred CchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhc--CCCC-------------CHh--hHHHHHHhcCC
Q 001249 957 VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFH--RDSI-------------DAA--QVVPAWLNCLP 1019 (1114)
Q Consensus 957 ~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~--~~~~-------------~~~--~~~~~~l~~Lp 1019 (1114)
...++++.+++.+.+..+++-.... +.. +.++..-+.... ...+ +-+ -+-+.+++.+
T Consensus 100 ~~~~~~~~L~~~~~~~~~~p~~~~~-~~~----~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl- 173 (339)
T PF12074_consen 100 FAEPFLPKLLQSLKEASANPLQSAQ-NGE----LVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL- 173 (339)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccc-ccc----HHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc-
Confidence 3445666777777777666632210 011 112221111000 0000 000 1222344443
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCCh
Q 001249 1020 IKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPP 1091 (1114)
Q Consensus 1020 ~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1091 (1114)
.+.++..-..+++..+.........+. ....+-+.|.-.+.... .+.+++......++.+-...|+
T Consensus 174 --~~~~d~~w~~~al~~~~~~~~~~~~~~---~~~~~~~a~i~ll~s~~-~~~~vR~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 174 --ASEEDLCWLLRALEALLSDHPSELSSD---KSSAWAQAFIYLLCSSN-VSWKVRRAALSALKKLYASNPE 239 (339)
T ss_pred --CCHhHHHHHHHHHHHHHhcchhhhhhh---HHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhChH
Confidence 345566666777777664332222221 01234444444443332 1456777777777776666665
No 282
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.46 E-value=83 Score=40.82 Aligned_cols=229 Identities=16% Similarity=0.249 Sum_probs=125.8
Q ss_pred hhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhh-hhhh---hhHHHHHHHHHH
Q 001249 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-DTLT---PHLKHLHAVFLN 191 (1114)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~-~~~~---~~~~~l~~~l~~ 191 (1114)
.+..||..+.+|++.- -+..|..++..+-......+....+.++..+..+..... ..+. ..+...++.|..
T Consensus 1049 ~s~~Irelv~rC~~~n-----ikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~ 1123 (1514)
T KOG0929|consen 1049 SSAEIRELVVRCISSN-----IKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLEE 1123 (1514)
T ss_pred CcchhHHHHHhhhhhh-----hhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHHH
Confidence 5667888888888722 225899999988888888888888888888775555432 2222 234445555555
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhcCCc---ch--------Hh-HHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001249 192 CLTNSNNPDVKIAALNAVINFIQCLTSS---AD--------RD-RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1114)
Q Consensus 192 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~--------~~-~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~ 259 (1114)
...+...+..-..+++.+..++..+.+. .. .+ ....++|.+.+. .....+...++|..+++.+-.+.
T Consensus 1124 F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~l-s~i~~~~~~~vr~~al~vlF~il 1202 (1514)
T KOG0929|consen 1124 FTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQL-SKIINDYRLEVRKRALEVLFDIL 1202 (1514)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhh-hHHhhccHHHHHHHHHHHHHHHH
Confidence 5443323444455555555555443322 00 01 112345544443 33333567889999999999998
Q ss_pred ccchHHHHHHH-HHHHHHHHHHhccCCc-------chhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhc
Q 001249 260 GTEPRFLRRQL-VDVVGSMLQIAEAESL-------EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (1114)
Q Consensus 260 ~~~~~~~~~~~-~~l~~~ll~~~~~~~~-------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 331 (1114)
..++..|.+++ ..++..++.+...-.. ++.....+...+..++.. ....++.+...++.++..+..+..
T Consensus 1203 ~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~l---f~~~~~~l~~lL~~~~~ll~~ci~ 1279 (1514)
T KOG0929|consen 1203 KEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDL---FTQFFKQLNNLLPKVLGLLVGCIK 1279 (1514)
T ss_pred HhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88887776543 3455544444322111 122233333333333332 011222333455555555555544
Q ss_pred CCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcC
Q 001249 332 DIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG 370 (1114)
Q Consensus 332 ~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~ 370 (1114)
...+ ...+++..|+..+....|
T Consensus 1280 ~~n~-----------------~la~~g~~cl~~l~~~n~ 1301 (1514)
T KOG0929|consen 1280 QDNQ-----------------QLARIGTSCLLQLVSSNG 1301 (1514)
T ss_pred Ccch-----------------hhHHhHHHHHHHHHHhcc
Confidence 3321 234566777777776665
No 283
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=82.34 E-value=30 Score=34.65 Aligned_cols=72 Identities=10% Similarity=0.116 Sum_probs=55.4
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhh--hHhHHHHHHHhccCCChhHHhhhhHHHHHHHhh
Q 001249 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKY--YETYLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1114)
Q Consensus 882 l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~--~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1114)
+.|++....+..+.+-.|..+++++|.+++.....+..| ..+++|..++-+...+..-+..|.+.++.+...
T Consensus 125 lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlld 198 (293)
T KOG3036|consen 125 LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLD 198 (293)
T ss_pred hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhc
Confidence 344443333233345569999999999999988777774 468999999999999999999999999888654
No 284
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.26 E-value=19 Score=33.45 Aligned_cols=97 Identities=10% Similarity=0.156 Sum_probs=68.2
Q ss_pred hhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhh--HHHHHHHHHHhh
Q 001249 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPH--LKHLHAVFLNCL 193 (1114)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l 193 (1114)
++...--.+|+.|.. . + ..=.+.+..|..-++++++++...|+.+|..+++.+|..|... -..++..+.+.+
T Consensus 20 ~dw~~ileicD~In~--~---~-~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~ 93 (142)
T cd03569 20 PDLASILEICDMIRS--K---D-VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLI 93 (142)
T ss_pred cCHHHHHHHHHHHhC--C---C-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHH
Confidence 455554555665541 1 1 2335778888888889999999999999999999988765432 233555555555
Q ss_pred cCCCChHHHHHHHHHHHHHHHhcCC
Q 001249 194 TNSNNPDVKIAALNAVINFIQCLTS 218 (1114)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1114)
.+..++.|+..++..+..+...+.+
T Consensus 94 ~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 94 KTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhCC
Confidence 5334889999999999999988753
No 285
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=82.21 E-value=44 Score=40.30 Aligned_cols=95 Identities=20% Similarity=0.254 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHH-HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001249 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF-QDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1114)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l 258 (1114)
|+-..++..+-.++..+ ..|..++..|+.++..-+.. -.... ..+++.+++.|. .+.+..+...|+.+|..+
T Consensus 66 P~~K~~~~~l~~~~~~~---~~Rl~~L~Ll~~~v~~qp~~-l~~i~~t~Lf~~LLk~L~---~D~~~~~~~~al~~Liml 138 (668)
T PF04388_consen 66 PHDKHLFDKLNDYFVKP---SYRLQALTLLGHFVRSQPPW-LYKILQTPLFKSLLKCLQ---FDTSITVVSSALLVLIML 138 (668)
T ss_pred ccHHHHHHHHHHHHcCc---hhHHHHHHHHHHHHhcCCch-HHHHhcChhHHHHHHHHh---hcccHHHHHHHHHHHHHH
Confidence 34566677777777754 77999999999999864311 00111 134444444332 266777888999999999
Q ss_pred HccchHHHHHHHHHHHHHHHHHh
Q 001249 259 AGTEPRFLRRQLVDVVGSMLQIA 281 (1114)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~ll~~~ 281 (1114)
.-..+..+.+|++.++..+..++
T Consensus 139 LP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 139 LPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred hccccchhhHHHHHHHHHHHHHH
Confidence 98889999999999999888776
No 286
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.19 E-value=99 Score=35.31 Aligned_cols=165 Identities=13% Similarity=0.133 Sum_probs=102.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhhhc-Cc--hHHHHHHHHHHcc---CCCHHHHHHHHHHHHHhcccCCCCcccCC
Q 001249 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ-DP--DSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLWPRL 96 (1114)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~-~p--~~~~~~L~~il~~---~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l 96 (1114)
.+..+|+++-|+|..+|+..-+.|..+... .+ +.+...|.+-|.. +..+.+|.-|...|-+ +..+
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~---------~Qe~ 162 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCY---------YQEM 162 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH---------HHhc
Confidence 567788889999999999999887765432 12 3333444444433 6678899999999887 3445
Q ss_pred CHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhh-HHHHHHHHHHhhhhhh
Q 001249 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKL-QESAFLIFAQLSQYIG 175 (1114)
Q Consensus 97 ~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~-r~~al~~l~~l~~~~~ 175 (1114)
+.+..+.+++.+...++++|+.+||+.+---| ... +.-.|.+.+-..+-+... |.-.-++|..+.+...
T Consensus 163 ~~neen~~~n~l~~~vqnDPS~EVRr~allni------~vd----nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ 232 (885)
T COG5218 163 ELNEENRIVNLLKDIVQNDPSDEVRRLALLNI------SVD----NSTYPCILERARDVSGANRRMVYERCLPRIGDLKS 232 (885)
T ss_pred cCChHHHHHHHHHHHHhcCcHHHHHHHHHHHe------eeC----CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhh
Confidence 55566778888888888889999999643221 112 344566776666655433 3334455555543322
Q ss_pred hhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 001249 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN 211 (1114)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 211 (1114)
..+.+++- ++--++.+- +..|+.++.+++..
T Consensus 233 lsi~kri~----l~ewgl~dR-e~sv~~a~~d~ia~ 263 (885)
T COG5218 233 LSIDKRIL----LMEWGLLDR-EFSVKGALVDAIAS 263 (885)
T ss_pred ccccceeh----hhhhcchhh-hhhHHHHHHHHHHH
Confidence 22222211 445566664 66777777766653
No 287
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=82.15 E-value=1.9 Score=30.00 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHH
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINA 441 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~ 441 (1114)
+.+...+...+.|+++.||.+|...
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4788889999999999999999865
No 288
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.83 E-value=3.6 Score=39.65 Aligned_cols=74 Identities=19% Similarity=0.088 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcC---CCchHHHHHHHHHHHHh
Q 001249 899 RRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGG---SVVKPLVGEALSRLNVV 972 (1114)
Q Consensus 899 r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~---~~~~~~~~~~l~~L~~~ 972 (1114)
|..|-.-+.+++...|+.+.+.+++++..+-.++...|..|...+...|..+....+ .++-||+.++|+.+.-.
T Consensus 131 rf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 131 RFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVLNTF 207 (262)
T ss_pred chhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhhhhh
Confidence 666777788888899999999999999999999999999999999988888877665 67889999999988543
No 289
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=81.72 E-value=2.6 Score=35.14 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhH
Q 001249 392 QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1114)
Q Consensus 392 ~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1114)
..|++++..|++++...+..+-+.++.++..+....+| ...|+..+-.+++.+-+.-.+..
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccH
Confidence 46999999999999998877777999999999888887 55689999999999887666554
No 290
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=81.61 E-value=56 Score=32.11 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=58.6
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch
Q 001249 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1114)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 263 (1114)
..++-+++...++ +..+|..|++.+..++..= -..+ . ..+..+..+..++++.++..|...+..+.+.++
T Consensus 8 ryl~~Il~~~~~~-~~~vr~~Al~~l~~il~qG--LvnP---~----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 8 RYLKNILELCLSS-DDSVRLAALQVLELILRQG--LVNP---K----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcC--CCCh---H----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 3444455555665 8999999999999888741 0011 1 234455555668899999999999999999998
Q ss_pred HHHHHHHHHHHHHH
Q 001249 264 RFLRRQLVDVVGSM 277 (1114)
Q Consensus 264 ~~~~~~~~~l~~~l 277 (1114)
..+.....+-+...
T Consensus 78 s~v~~~~~~gi~~a 91 (187)
T PF12830_consen 78 SLVESRYSEGIRLA 91 (187)
T ss_pred HHHHHHHHHHHHHH
Confidence 88876555444433
No 291
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=80.88 E-value=71 Score=32.79 Aligned_cols=197 Identities=13% Similarity=0.107 Sum_probs=97.3
Q ss_pred HHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCc
Q 001249 62 AHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW 141 (1114)
Q Consensus 62 ~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w 141 (1114)
+.-+....++.........|......+ . .....+- ..+..+.+.+....+..+.+.+..+.+.. +..+
T Consensus 6 ~~~l~~~~~~~~~~~~L~~L~~l~~~~--------~-~~~~~v~-~~L~~L~~~~~~~~~~~~~rLl~~lw~~~--~r~f 73 (234)
T PF12530_consen 6 LYKLGKISDPELQLPLLEALPSLACHK--------N-VCVPPVL-QTLVSLVEQGSLELRYVALRLLTLLWKAN--DRHF 73 (234)
T ss_pred HHHhcCCCChHHHHHHHHHHHHHhccC--------c-cchhHHH-HHHHHHHcCCchhHHHHHHHHHHHHHHhC--chHH
Confidence 333444555555555555555554432 0 1122222 22333333334444444455555554431 1233
Q ss_pred hhhHHHHHHhh-------cC--CChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhh-cCCCChHHHHHHHHHHHH
Q 001249 142 PELLPFMFQCV-------SS--DSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL-TNSNNPDVKIAALNAVIN 211 (1114)
Q Consensus 142 ~~ll~~l~~~~-------~~--~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~vr~~a~~~l~~ 211 (1114)
|.+-+.+.... .+ ......-+....+..+|...++ +...+++.+..++ .+. ++.++..+++++..
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~-~~~~~alale~l~~ 148 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSC-DEVAQALALEALAP 148 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 44444444411 11 1223333334567777776666 6777888888888 565 78899999999998
Q ss_pred HHHhcCCcchHhHHHhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHHHhccC
Q 001249 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLN-NGNEATAQEALELLIELAG--TEPRFLRRQLVDVVGSMLQIAEAE 284 (1114)
Q Consensus 212 l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~~~~~l~~~ll~~~~~~ 284 (1114)
+.+.- .-.+.. .+.++..-+. +..+.+.+..+..+.-+.. ...+.......+++..+++.....
T Consensus 149 Lc~~~-----vvd~~s----~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 149 LCEAE-----VVDFYS----AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHh-----hccHHH----HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 88541 111222 2233333232 3344554444444433222 112334445567788888776544
No 292
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=80.33 E-value=14 Score=39.39 Aligned_cols=104 Identities=13% Similarity=0.231 Sum_probs=72.6
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhH
Q 001249 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVL 462 (1114)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il 462 (1114)
+...+.+|.....+|.-++.-.++. ...+..|.++|++.+|.|.-.|+..++.++..|+..+.... ...+.
T Consensus 19 e~nT~enW~~IlDvCD~v~~~~~~~--------kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~ 90 (462)
T KOG2199|consen 19 EKNTSENWSLILDVCDKVGSDPDGG--------KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFT 90 (462)
T ss_pred cccccccHHHHHHHHHhhcCCCccc--------HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHH
Confidence 3455678987766665555433322 35677888899999999999999999999999987663322 23344
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc
Q 001249 463 PALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1114)
Q Consensus 463 ~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1114)
..+...+.+..+++|+++....+..+.+.+..+
T Consensus 91 ~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 91 TELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 444444553368889888888888888877643
No 293
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=80.19 E-value=23 Score=32.52 Aligned_cols=80 Identities=23% Similarity=0.188 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhH-h-hhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHH
Q 001249 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY-D-AVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1114)
Q Consensus 501 l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~-~-~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1114)
-...+..|.+-++++++.++-.|+..+..++..+|..|...+ . .++..+..++... ......+|.++++.+...+..
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHHHHH
Confidence 456678888888999999999999999999999998775433 2 4555566666542 123456899999999998887
Q ss_pred hch
Q 001249 579 VGK 581 (1114)
Q Consensus 579 ~~~ 581 (1114)
++.
T Consensus 114 f~~ 116 (133)
T cd03561 114 FGG 116 (133)
T ss_pred hcC
Confidence 764
No 294
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=79.50 E-value=1.4e+02 Score=35.43 Aligned_cols=54 Identities=26% Similarity=0.157 Sum_probs=35.5
Q ss_pred hhHhHHHHHHHhccCC--ChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhh
Q 001249 920 YYETYLPFLLEACNDE--NQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVI 973 (1114)
Q Consensus 920 ~~~~i~~~ll~~l~~~--~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l 973 (1114)
+.+.++..+++.+.++ .+..|++|+.=||.++..++..-..++..++..|...+
T Consensus 343 ~~~~Fl~~L~~~~~~~~~~~~~R~~A~~YlaSflaRAk~v~~~~v~~~l~~L~~w~ 398 (563)
T PF05327_consen 343 LADAFLSFLWKIAFDPNQPPVTRQAAAAYLASFLARAKFVPLSTVRSVLSYLCDWL 398 (563)
T ss_dssp HHHHHHHHHHHHHH-SSS-HHHHHHHHHHHHHHHHHBTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4556666666666554 47889999888998888887655566666666666644
No 295
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=79.24 E-value=1.6 Score=36.33 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHH
Q 001249 1026 EAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQ 1105 (1114)
Q Consensus 1026 e~~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 1105 (1114)
+...+..+|+.++. ..|-.+++ ++|+++..++.... ++..++..+++.+..++..+.+. |..--..+++|+
T Consensus 5 ~rH~~VLGL~Alv~-a~Py~vP~---w~P~~l~~La~~~~----~~~~I~~tvk~tl~eFkrtH~D~-W~~~~~~Ft~~q 75 (90)
T PF11919_consen 5 RRHAAVLGLSALVL-AFPYDVPP---WMPEVLEELARHAN----DPQPIRTTVKKTLSEFKRTHQDT-WHEHKKKFTEDQ 75 (90)
T ss_dssp HHHHHHHHHHHHHT-T-S--SS----HHHHHHHHHHTTSS----S-SSHHHHTHHHHHHHHHHTSTT-HHHHGGG--SST
T ss_pred HHHHHHHHHHHHHH-HcCCCCcc---cHHHHHHHHHHHhC----CCchHHHHHHHHHHHHHHhCccc-HHHHHHhCCHHH
Confidence 45667889999995 45655565 89999988877664 24568889999999999999876 977777888887
Q ss_pred HHHHHhh
Q 001249 1106 QLALQSI 1112 (1114)
Q Consensus 1106 ~~~l~~~ 1112 (1114)
...|+.+
T Consensus 76 l~~l~~~ 82 (90)
T PF11919_consen 76 LEDLEDV 82 (90)
T ss_dssp TGGGSS-
T ss_pred HHHHHcC
Confidence 7766654
No 296
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.69 E-value=94 Score=32.88 Aligned_cols=112 Identities=17% Similarity=0.176 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCC-ChhHHHHHHHHHHHhhhcCCc
Q 001249 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTP 494 (1114)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~~ 494 (1114)
++.|+....... .+|.|...++.+++-++-..++.-..-+-...-...++.++..| ...||..+|+.+.+++.....
T Consensus 330 ~~~ii~l~~~h~--~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~ 407 (461)
T KOG4199|consen 330 LDKIITLALRHS--DDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE 407 (461)
T ss_pred hHHHHHHHHHcC--CChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 344455444444 45678888888888888665544322222334445566676523 346899999999999876542
Q ss_pred ccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001249 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1114)
Q Consensus 495 ~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l 530 (1114)
.-.+.+..=++.|+......++..+..+-.++..+
T Consensus 408 -~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 408 -NRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred -ccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 23466777678888777766666666555555444
No 297
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.20 E-value=1.2e+02 Score=33.73 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCC
Q 001249 395 HAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQN 474 (1114)
Q Consensus 395 ~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~ 474 (1114)
.+|+..|-.+++...-..+-.-..++..++++|.-.+..+-......|-.++-...... .---..++..+.+.+.. .+
T Consensus 281 rva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~-~M~~~~iveKL~klfp~-~h 358 (791)
T KOG1222|consen 281 RVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKI-VMEQNGIVEKLLKLFPI-QH 358 (791)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchH-HHHhccHHHHHHHhcCC-CC
Confidence 46667777777766544444445678888888877776665555555555543322211 11234566677777766 67
Q ss_pred hhHHHHHHHHHHHh
Q 001249 475 PRVQAHAASAVLNF 488 (1114)
Q Consensus 475 ~~v~~~a~~al~~l 488 (1114)
+.++......+-++
T Consensus 359 ~dL~~~tl~LlfNl 372 (791)
T KOG1222|consen 359 PDLRKATLMLLFNL 372 (791)
T ss_pred HHHHHHHHHHhhhc
Confidence 77777666665544
No 298
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=77.48 E-value=11 Score=31.82 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=47.9
Q ss_pred CCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHH
Q 001249 154 SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQ 214 (1114)
Q Consensus 154 ~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~ 214 (1114)
++++..|+.|..+++.++..++.........+...+.+.+.|+ .+...+..|+..|..+-.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3567899999999999999988765555667888888888876 356678889888877743
No 299
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=77.16 E-value=59 Score=33.88 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=58.9
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
++..+++..++..+.+ +.+.+|..+...|..++...+.+ .|+-.+++..+.++++++.. .+|+.++..+....|
T Consensus 184 ~~~~~~l~~Ll~lL~n-~~~w~~~~~L~iL~~ll~~~d~~--~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 184 DHEFQILTFLLGLLEN-GPPWLRRKTLQILKVLLPHVDMR--SPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSG 257 (262)
T ss_pred hhHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHhccccCC--CCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhcc
Confidence 4556788888888888 77889999999999999887654 46888999999999987654 567777777766555
Q ss_pred h
Q 001249 536 E 536 (1114)
Q Consensus 536 ~ 536 (1114)
.
T Consensus 258 s 258 (262)
T PF14225_consen 258 S 258 (262)
T ss_pred c
Confidence 4
No 300
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=76.70 E-value=1e+02 Score=35.83 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=46.5
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhh
Q 001249 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1114)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1114)
.+..+...+.=.++..|.+.=.+++-++-+.+. -.++..+-+...|.+..|-..+..++|-+...
T Consensus 641 ~lR~f~h~l~yge~~iRravPLal~llsvSNPq------~~vlDtLsk~shd~D~eva~naIfamGLiGAG 705 (878)
T KOG2005|consen 641 VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ------VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAG 705 (878)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc------chHHHHHHHhccCcchHHHHHHHHHhccccCC
Confidence 344444555557788888888888887765443 24677777888888888888888888876543
No 301
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=76.61 E-value=32 Score=31.87 Aligned_cols=92 Identities=5% Similarity=0.075 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCC-CCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHH-HHhhccCC--CChhHHHHHHHHHHHhhhc
Q 001249 417 EQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPA-LAGAMDDF--QNPRVQAHAASAVLNFSEN 491 (1114)
Q Consensus 417 ~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~-l~~~l~~~--~~~~v~~~a~~al~~l~~~ 491 (1114)
...+..+.+.+. ++++.|...|+..|..+++.++..+.... ...++.. +.+.+... .+..|+..+...+..+.+.
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 345666777776 57899999999999999999998774222 2355554 55555431 2458999999999999888
Q ss_pred CCcccccCchHHHHHHH
Q 001249 492 CTPEILTPYLDGIVSKL 508 (1114)
Q Consensus 492 ~~~~~l~~~l~~il~~L 508 (1114)
++.+.-.+++..+...|
T Consensus 117 f~~~~~l~~i~~~y~~L 133 (141)
T cd03565 117 FRGSPDLTGVVEVYEEL 133 (141)
T ss_pred hCCCccchHHHHHHHHH
Confidence 76432223444444433
No 302
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=76.28 E-value=19 Score=32.09 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhc-------cCccchhhhHHHHHHHH
Q 001249 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-------TDKSNRMLRAKSMECIS 573 (1114)
Q Consensus 501 l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~-------~~~~~~~lr~~a~~~l~ 573 (1114)
+..++..|.+-|++.++.|+..++.+|..++....+.|...+..=...+..+.+-. .+.....+|..|-++++
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 56889999999999999999999999999999988888776665555444432211 12234557777777665
Q ss_pred HH
Q 001249 574 LV 575 (1114)
Q Consensus 574 ~i 575 (1114)
.+
T Consensus 116 ~i 117 (122)
T cd03572 116 AI 117 (122)
T ss_pred HH
Confidence 54
No 303
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=76.00 E-value=28 Score=33.06 Aligned_cols=139 Identities=17% Similarity=0.120 Sum_probs=77.5
Q ss_pred HHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC
Q 001249 61 LAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN 139 (1114)
Q Consensus 61 L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~ 139 (1114)
++.-|.. ..++++|..|.+++-+++... ..+..+.+ ...++.+..+.+..-...+..+++.+......-+
T Consensus 8 lL~~L~~~~~~~~~r~~a~v~l~k~l~~~--------~~~~~~~~-~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 8 LLTSLDMLRQPEEVRSHALVILSKLLDAA--------REEFKEKI-SDFIESLLDEGEMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp HHHHHHCTTTSCCHHHHHHHHHHHHHHHH--------HHHHHHHH-HHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHhcccCCCHhHHHHHHHHHHHHHHHh--------HHHHHHHH-HHHHHHHHccccchhHHHHHHHHHHHhCCCHHHH
Confidence 3333433 667899999999999986332 12223333 2333333333444444444555555433210000
Q ss_pred ----CchhhHHHHHHhhc--CCChhhHHHHHHHHHHhhhhh--hhhhhhhHHHHHHHHHHhhcCCCChH-HHHHHHHHHH
Q 001249 140 ----GWPELLPFMFQCVS--SDSVKLQESAFLIFAQLSQYI--GDTLTPHLKHLHAVFLNCLTNSNNPD-VKIAALNAVI 210 (1114)
Q Consensus 140 ----~w~~ll~~l~~~~~--~~~~~~r~~al~~l~~l~~~~--~~~~~~~~~~l~~~l~~~l~~~~~~~-vr~~a~~~l~ 210 (1114)
.-+.+++.+...+. +.+......+++++..-|.+- ... .....++.+...+..+.+.. +|..|+-+|.
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~---I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTF---ISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHC---CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHH---HHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 12467777887777 677778888888888776442 122 24455567777775443555 7887776664
Q ss_pred H
Q 001249 211 N 211 (1114)
Q Consensus 211 ~ 211 (1114)
.
T Consensus 156 K 156 (157)
T PF11701_consen 156 K 156 (157)
T ss_dssp H
T ss_pred c
Confidence 3
No 304
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=75.90 E-value=30 Score=31.86 Aligned_cols=94 Identities=13% Similarity=0.175 Sum_probs=65.0
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhcCC----
Q 001249 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFR---- 428 (1114)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~---- 428 (1114)
|..-.+..+.+... ..--...+..+...++++++++..-|+..|..++++|+..+...+. .++..+.+.+.
T Consensus 19 w~~ileicD~In~~---~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~ 95 (139)
T cd03567 19 WEAIQAFCEQINKE---PEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYL 95 (139)
T ss_pred HHHHHHHHHHHHcC---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccC
Confidence 44445555555421 1122345666777888999999999999999999999976654432 34445555553
Q ss_pred --CCChhHHHHHHHHHHHhHhhhch
Q 001249 429 --DPHPRVRWAAINAIGQLSTDLGP 451 (1114)
Q Consensus 429 --d~~~~vr~~a~~~l~~l~~~~~~ 451 (1114)
..++.||...+..+...+..++.
T Consensus 96 ~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 96 GSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 36789999999999998887753
No 305
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=75.72 E-value=57 Score=31.41 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcch----HhHHHhhH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHH
Q 001249 198 NPDVKIAALNAVINFIQCLTSSAD----RDRFQDLL-PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVD 272 (1114)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~l~-p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 272 (1114)
+...|..+++.+..+++....... ...+..++ ..+...+.+...+.++.+...+++++..+...+...+...+..
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888877765421111 00122111 2333344444444568888899999999998888888888888
Q ss_pred HHHHHHH-HhccCCcchhHHHHHHHHHHHHHH
Q 001249 273 VVGSMLQ-IAEAESLEEGTRHLAIEFVITLAE 303 (1114)
Q Consensus 273 l~~~ll~-~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1114)
++..++. +++.+.....-|..+++++..+++
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 8877776 554332234578889999999998
No 306
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.34 E-value=1.2e+02 Score=32.23 Aligned_cols=306 Identities=15% Similarity=0.155 Sum_probs=157.2
Q ss_pred hCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHH-hhh-hhhhHH
Q 001249 386 LAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQF-HPQVLP 463 (1114)
Q Consensus 386 l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~-~~~il~ 463 (1114)
-.+++-..-.-++.++..+..+-++.+.-.-..++-.++. ++.++..+-...+.++..-|.. .++. ..+ --.+++
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~-~~~~~~dlt~~~~~~v~~Ac~~--hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLA-LKVESEEVTLLTLQWLQKACIM--HEVNRQLFMELKILE 192 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHh-cccchHHHHHHHHHHHHHHHHH--hHHHHHHHHHhhHHH
Confidence 4556666667777788888777776554433333322222 1223344444445444443321 1111 112 235777
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHhhhcCCc----ccccCchHH-----HHHHHHHHhhcC-ChhHHHHHHHHHHHHHHh
Q 001249 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTP----EILTPYLDG-----IVSKLLVLLQNG-KQMVQEGALTALASVADS 533 (1114)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~----~~l~~~l~~-----il~~L~~~l~~~-~~~v~~~al~~l~~l~~~ 533 (1114)
.+...++...+.++-..+++++..+...-.- .....|-.. ++..|...++.. ++.+...+..+++.++-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 7777776644556777888998877643110 001122222 234444444332 355666777777777632
Q ss_pred hhhhhhhhHh--hhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhh------HHHHHHHHHHHhcCCCCC
Q 001249 534 SQEHFQKYYD--AVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDD------AKQVMEVLMSLQGSQMET 605 (1114)
Q Consensus 534 ~~~~~~~~~~--~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~------~~~i~~~l~~~~~~~~~~ 605 (1114)
.+|-.-.. .=+..|+.++.++++.+. |.-+=+|++.+..-.|.+..... .+.++.++.... +
T Consensus 273 --~E~C~~I~e~GGl~tl~~~i~d~n~~~~---r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~-----~ 342 (461)
T KOG4199|consen 273 --DEICKSIAESGGLDTLLRCIDDSNEQGN---RTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS-----D 342 (461)
T ss_pred --HHHHHHHHHccCHHHHHHHHhhhchhhH---HHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC-----C
Confidence 22211111 123455666655444443 43344566665555565544333 344555554422 2
Q ss_pred CCchhhHHHHHHHHHHHHhccCCccchhh-hhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchh
Q 001249 606 DDPTTSYMLQAWARLCKCLGQDFLPYMSV-VMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSV 684 (1114)
Q Consensus 606 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1114)
+..+.+.++.++..+|-..++.-..++.. .-...++.+...|. .
T Consensus 343 ~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~-----------------------------------~ 387 (461)
T KOG4199|consen 343 DPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV-----------------------------------A 387 (461)
T ss_pred ChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH-----------------------------------H
Confidence 33467777777777776655554433332 22333444433221 0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHH
Q 001249 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPEL 740 (1114)
Q Consensus 685 ~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l 740 (1114)
-..+..||.++-.++......-.|++..=++.++..-.. -|+.++.+|-.+|-.|
T Consensus 388 a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~-~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 388 AQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKA-NHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHh-cCccHHHHHHHHHHhc
Confidence 122356788888888776655556665555555554443 3788887777776665
No 307
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.85 E-value=1.7e+02 Score=38.08 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=78.4
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHH
Q 001249 385 YLAAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1114)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 463 (1114)
-+.-.|...|.-|+..++.+.+.... .....++.......+...|.+..||.+....+..+...++..+ .+|+..++|
T Consensus 49 kL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l-sp~LK~li~ 127 (1312)
T KOG0803|consen 49 KLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL-SPFLKSLIP 127 (1312)
T ss_pred HHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhhh
Confidence 34456788888999999988876542 2233355555566677889999999999999999999999888 799999999
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHh
Q 001249 464 ALAGAMDDFQNPRVQAHAASAVLNF 488 (1114)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l 488 (1114)
..+-+..| ....|..+|...+...
T Consensus 128 ~wl~~~~d-~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 128 PWLGGQFD-LDYPVSEAAKASFKDG 151 (1312)
T ss_pred hhhheecc-cchHHHHHHHHHHHhh
Confidence 99988888 6777766666665443
No 308
>PLN03205 ATR interacting protein; Provisional
Probab=74.81 E-value=1.3e+02 Score=32.48 Aligned_cols=206 Identities=13% Similarity=0.178 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhh-hh--h----hhhHHHHHHHHHHhhc
Q 001249 122 KKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-DT--L----TPHLKHLHAVFLNCLT 194 (1114)
Q Consensus 122 ~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~-~~--~----~~~~~~l~~~l~~~l~ 194 (1114)
.++.++...+.+.....-....++..|..+..-.+..+...++++|..+.+++- +. | ...+..++....+...
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv 381 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIAS 381 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHh
Confidence 456666666666544434667889999999888888888889999998888742 21 1 1234455555544432
Q ss_pred CCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHccchHHH-------
Q 001249 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-GNEATAQEALELLIELAGTEPRFL------- 266 (1114)
Q Consensus 195 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~------- 266 (1114)
..+...||..|+..+..++..-......+.|... .+++.+.++++. ...-+++.++.+|--+..+ |..+
T Consensus 382 ~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~~--~VfESiaQLLkkEaGl~VqKealhLLfLLLNC-pklL~iFcSg~ 458 (652)
T PLN03205 382 IRTEEDVKLEALSIMNIIVMSTDAYTARESFVSK--EVFESISLLLRKEGGLHVRKEAIHLFYLLLNC-PKLYDRFDSLH 458 (652)
T ss_pred ccchhheeeehhhhhHHhhhccchhHHHHHhcch--HHHHHHHHHHHHhccchhhHHHHHHHHHHHcC-cHHHHHHhcCC
Confidence 2237789999999888877654322233444321 344444444432 2334666666655444322 1111
Q ss_pred ------------------HHHHHHHHHHHHHHh---ccCCcchhHHHHHHHHHHHHHHhhhccch-h----hhcchhhHH
Q 001249 267 ------------------RRQLVDVVGSMLQIA---EAESLEEGTRHLAIEFVITLAEARERAPG-M----MRKLPQFIN 320 (1114)
Q Consensus 267 ------------------~~~~~~l~~~ll~~~---~~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~----~~~~~~~~~ 320 (1114)
..-+..++..+..++ ++...+-+++..++-++..++...+..-. + ...-.+|+.
T Consensus 459 ~e~~~ad~eNd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLm 538 (652)
T PLN03205 459 EEKNSSDTENDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLM 538 (652)
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHH
Confidence 112333444444333 22234456777777777766663110000 0 011235666
Q ss_pred HHHHHHHHhh
Q 001249 321 RLFAILMSML 330 (1114)
Q Consensus 321 ~l~~~l~~~l 330 (1114)
-++..|..-|
T Consensus 539 LILqvLvSem 548 (652)
T PLN03205 539 LILHLLVAEI 548 (652)
T ss_pred HHHHHHHHHh
Confidence 6777666544
No 309
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=74.68 E-value=16 Score=30.40 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=54.8
Q ss_pred hhHHHHHHhh-cCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 001249 143 ELLPFMFQCV-SSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVI 210 (1114)
Q Consensus 143 ~ll~~l~~~~-~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~ 210 (1114)
+++..+...+ .+++.++|+..+.++..+....++.+..-++.++.++.....++ +..+-..|.+++.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~-~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDN-DESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCC-CccHHHHHHHHHh
Confidence 5666666664 45688999999999999999999988888999999999988886 7777777777654
No 310
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=74.45 E-value=5.8 Score=40.21 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhch
Q 001249 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1114)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1114)
+.+.+.+.++++|++.-.|.+|+.++...... ...+.++..+...+.|++..||.+..|+|..++...++
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 56778888899998877777776555444333 56678888999999999999999999999998876544
No 311
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=74.42 E-value=19 Score=32.15 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=52.6
Q ss_pred CCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH---HHhhc--C-----CCChHHHHHHHHH
Q 001249 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVF---LNCLT--N-----SNNPDVKIAALNA 208 (1114)
Q Consensus 139 ~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l---~~~l~--~-----~~~~~vr~~a~~~ 208 (1114)
+...+++..|..-+++.++.++.-+|.+|..++...++.|...+..-...+ .+.-. | .....||..|-.+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 456789999999999989999999999999999987776654333322233 22211 1 1245788888777
Q ss_pred HHHHHH
Q 001249 209 VINFIQ 214 (1114)
Q Consensus 209 l~~l~~ 214 (1114)
+..+..
T Consensus 114 ~~~if~ 119 (122)
T cd03572 114 IKAIFS 119 (122)
T ss_pred HHHHhc
Confidence 766553
No 312
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=74.01 E-value=69 Score=32.91 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=32.9
Q ss_pred HHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCC-CHhhHHHHHHhc
Q 001249 966 LSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI-DAAQVVPAWLNC 1017 (1114)
Q Consensus 966 l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~-~~~~~~~~~l~~ 1017 (1114)
++.|.+.+.+++ -+.-+|.+|++|++.+....+..= .+-+.+..++..
T Consensus 113 ~~~L~~li~~~~----~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~ 161 (249)
T PF06685_consen 113 IEPLKELIEDPD----ADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNY 161 (249)
T ss_pred HHHHHHHHhCCc----HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 455666676654 367899999999999988776532 344556666655
No 313
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=73.67 E-value=37 Score=32.13 Aligned_cols=128 Identities=8% Similarity=0.181 Sum_probs=64.9
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHH---hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc
Q 001249 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ---NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1114)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1114)
+-|.++.+|...+ ++......|+++.......+. ..-++.+...++..-.. .+ ..|...+..+......+
T Consensus 4 ikplLIsCL~~q~--~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~--e~---~kA~~IF~~L~~~l~~e 76 (174)
T PF04510_consen 4 IKPLLISCLTMQE--TKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSEN--EP---VKAFHIFICLPMPLYGE 76 (174)
T ss_pred hHHHHHHHHHhhc--ccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhcc--ch---HHHHHHHHhCCchhhhh
Confidence 3455555665443 334555566665555443331 12244444444442222 22 45555555555333456
Q ss_pred cccCchHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHh---hhhhh-hhhHhhhhHHHHHHH
Q 001249 496 ILTPYLDGIVSKLLVLLQNGK-QMVQEGALTALASVADS---SQEHF-QKYYDAVMPFLKAIL 553 (1114)
Q Consensus 496 ~l~~~l~~il~~L~~~l~~~~-~~v~~~al~~l~~l~~~---~~~~~-~~~~~~i~~~L~~~l 553 (1114)
.+.|+++.+++...+.|.++. ..+..-.+..-+.++-. ..... ..++..+++.+.+.+
T Consensus 77 fl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv 139 (174)
T PF04510_consen 77 FLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSV 139 (174)
T ss_pred HHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 788999999999999888774 34443344433333322 22111 234455555544443
No 314
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=73.20 E-value=62 Score=32.60 Aligned_cols=144 Identities=15% Similarity=0.159 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCC-CChhHHHHH-HHHHHHhHhhhchhH
Q 001249 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRD-PHPRVRWAA-INAIGQLSTDLGPDL 453 (1114)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a-~~~l~~l~~~~~~~~ 453 (1114)
.....++..+..+..-..|..|+..++........ ..++.+...+.+ .++.+.... ...++.+..
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~-------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~------ 116 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTE-------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLK------ 116 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H-------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHH------
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH-------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHH------
Confidence 44455666677777777888888777654432221 133444444432 455555443 333333321
Q ss_pred HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001249 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1114)
Q Consensus 454 ~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1114)
.+ +...+.+.+-+.+ +++-+|..++..+..+... .+++.++..+...+.++...||...-.+|..++..
T Consensus 117 --~~-~~~~~~~~~W~~s-~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 117 --KH-PEALELLEKWAKS-DNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp --HH-GGHHHHHHHHHHC-SSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred --hh-HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 12 5677777777887 7787777776665433332 56677788888888888889998888888777766
Q ss_pred hhhhhhhhHh
Q 001249 534 SQEHFQKYYD 543 (1114)
Q Consensus 534 ~~~~~~~~~~ 543 (1114)
.++...+|+.
T Consensus 186 ~~~~v~~~l~ 195 (213)
T PF08713_consen 186 DPDEVLEFLQ 195 (213)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5554444443
No 315
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=72.96 E-value=42 Score=29.81 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=52.8
Q ss_pred cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHH--HHHHHHh----cC--CCCChhHHHHHHHHHHH
Q 001249 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ--VLSMVLN----SF--RDPHPRVRWAAINAIGQ 444 (1114)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~--i~~~l~~----~l--~d~~~~vr~~a~~~l~~ 444 (1114)
.....++..+...+.+.+|++..-|+..+-.++..|++.+..++.. .+..++. .. .+.+..||..+...+..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 4456788888888999999999999999999999999766655432 2222221 11 24578899988877765
Q ss_pred h
Q 001249 445 L 445 (1114)
Q Consensus 445 l 445 (1114)
.
T Consensus 113 w 113 (115)
T cd00197 113 W 113 (115)
T ss_pred H
Confidence 4
No 316
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=72.69 E-value=11 Score=31.91 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=46.9
Q ss_pred CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHhH
Q 001249 388 APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPH--PRVRWAAINAIGQLS 446 (1114)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~--~~vr~~a~~~l~~l~ 446 (1114)
+.+|..|+-|...++.++....+.....-+.+...+.+.+.|++ ...+..|...|..+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 45899999999999999987765555556688888888888765 456788888888874
No 317
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=72.64 E-value=23 Score=33.62 Aligned_cols=131 Identities=17% Similarity=0.119 Sum_probs=81.8
Q ss_pred chhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhcCC--C
Q 001249 354 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFR--D 429 (1114)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~--d 429 (1114)
.+..+.-++.++-...+ +.+-..+..++...+...+......++.++..+-.+.++.....+ +.+++.+..... .
T Consensus 21 ~r~~a~v~l~k~l~~~~-~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~ 99 (157)
T PF11701_consen 21 VRSHALVILSKLLDAAR-EEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKS 99 (157)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhccc
Confidence 34444445544433333 455666777777777665555777788888888888777555432 345666666666 6
Q ss_pred CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChh-HHHHHHHHHHH
Q 001249 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLN 487 (1114)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~-v~~~a~~al~~ 487 (1114)
.+..+..+++.+++.-|.. ...........+++|-+..+..++.. +|..|.-+|..
T Consensus 100 ~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 100 KDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp S-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 7788888999998876632 22223346677888888885425555 77777666543
No 318
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=72.20 E-value=3.1e+02 Score=35.70 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC
Q 001249 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1114)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1114)
..+..++..|+..+--|...+|-+|-.+.-..+.+-+.-+-...++.+.+.+.+ ++..+...+..+|.+++..-
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhS-KhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHS-KHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhh-hhhhhhhhHHHHHHHHhcCC
Confidence 356778888888887788778877777765544332112234567777777777 78888889999999988654
No 319
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=71.82 E-value=1.6e+02 Score=32.28 Aligned_cols=172 Identities=15% Similarity=0.296 Sum_probs=96.7
Q ss_pred CchhhHHHHHHhhcC-CChhhHHHHHHHHHHhhhhhhhh---hhhhHHHHHHHHHHhhcCC-------------CChHHH
Q 001249 140 GWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDT---LTPHLKHLHAVFLNCLTNS-------------NNPDVK 202 (1114)
Q Consensus 140 ~w~~ll~~l~~~~~~-~~~~~r~~al~~l~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~-------------~~~~vr 202 (1114)
.|...+..++++++. .||++-.. +|..++..+... ....++.+...+.+.+.+. ...++.
T Consensus 138 ~is~~~~~il~~L~~e~dWeV~s~---VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~ 214 (356)
T PF03542_consen 138 PISEWFSVILQCLEHETDWEVYSY---VLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQ 214 (356)
T ss_pred eHHHHHHHHHHHHhcCCCcHHHHH---HHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHH
Confidence 456667777777764 46655333 233333222111 0112444444444433321 135677
Q ss_pred HHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhc
Q 001249 203 IAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE 282 (1114)
Q Consensus 203 ~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~ 282 (1114)
...+.+|..++.+-..- +... -..+++.+...+.+ .....|+.+|.-.+-..|..+.+.++.++..+-++..
T Consensus 215 ~~~~~~Ls~LisYh~~~-~k~~----qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~t 286 (356)
T PF03542_consen 215 VCVFPVLSALISYHSHF-SKQE----QDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKIST 286 (356)
T ss_pred HHHHHHHHHHHHHHHhc-CHhH----HHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 77888888888874311 1111 11455555544443 2445666677666666688888888888877766543
Q ss_pred cCCcchhHHHHHHHHHHHHHHhhhccc-hhhhcc-hhhHHHHHHHHHHhh
Q 001249 283 AESLEEGTRHLAIEFVITLAEARERAP-GMMRKL-PQFINRLFAILMSML 330 (1114)
Q Consensus 283 ~~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~-~~~~~~l~~~l~~~l 330 (1114)
...+..-.+||+..++. -| .+...+ ..-...++..+++++
T Consensus 287 ----t~~~Ai~ILEFLs~L~~----lP~~ly~nF~~~~y~~VF~I~l~Y~ 328 (356)
T PF03542_consen 287 ----TPNMAIHILEFLSSLSR----LPNHLYSNFTEDEYKRVFAIALPYT 328 (356)
T ss_pred ----chhhHHHHHHHHHHHhh----CcHHHhcCCCHHHHHHHHHHHhhcc
Confidence 34456678999999998 46 444432 234456777777664
No 320
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=71.41 E-value=51 Score=29.25 Aligned_cols=74 Identities=12% Similarity=0.182 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh-hhHHHHHhh-----ccCCCChhHHHHHHHHHHHh
Q 001249 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGA-----MDDFQNPRVQAHAASAVLNF 488 (1114)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~il~~l~~~-----l~~~~~~~v~~~a~~al~~l 488 (1114)
....++..+.+.+.+++|++..-|+..|..+++.+++.+...... .++..+++. .....+..||..+...+...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999998776432211 222223221 11114667888887776554
No 321
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.08 E-value=15 Score=37.94 Aligned_cols=106 Identities=19% Similarity=0.289 Sum_probs=67.7
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCc
Q 001249 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY 500 (1114)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~ 500 (1114)
-.++..+.+++|.||.+|..-+..+... +......|....++.+.+.+.+ ..+ ...|..++.++.....-. ...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~l~--~~l 79 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEELR--KKL 79 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHHHH--HHH
Confidence 3466778999999999999777666554 3333356778889999999988 544 456777888887654311 122
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001249 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1114)
Q Consensus 501 l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~ 532 (1114)
+..++..++..+.++....-...+..+..+++
T Consensus 80 l~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 80 LQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 34455555655666644444455555555443
No 322
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=70.90 E-value=2.2e+02 Score=33.46 Aligned_cols=129 Identities=15% Similarity=0.188 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHH--HHH----HhHHHHHHHHHhcCCCCCh
Q 001249 359 QECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VMV----KNLEQVLSMVLNSFRDPHP 432 (1114)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--~~~----~~l~~i~~~l~~~l~d~~~ 432 (1114)
.-.+.++++..| .-++. -+..+.+.+.+.+...|.+.+.+.+.+++.... .+. ..+..++..+...+.|.+|
T Consensus 283 slFl~kls~l~p-~i~lr-q~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~p 360 (1128)
T COG5098 283 SLFLNKLSELSP-GIMLR-QYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYP 360 (1128)
T ss_pred HHHHHHHhhcCc-hHHHH-HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccch
Confidence 345566665554 23333 245567788899999999999999999876442 233 4566788999999999999
Q ss_pred hHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC
Q 001249 433 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1114)
Q Consensus 433 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1114)
-+|..|+..+..++..-... ...-..+...+...++| .+..||..|+..+..+....
T Consensus 361 y~RtKalqv~~kifdl~sk~--~~~r~ev~~lv~r~lqD-rss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 361 YTRTKALQVLEKIFDLNSKT--VGRRHEVIRLVGRRLQD-RSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred HHHHHHHHHHHHHHhCcccc--cchHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhcC
Confidence 99999999998887543221 23355788888999999 89999999999988876543
No 323
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=70.40 E-value=22 Score=35.08 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHH
Q 001249 361 CLDRLAIALGGNTIVPVASEQLPAYLAAPE-WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (1114)
Q Consensus 361 ~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 439 (1114)
.+|.++..+..-...+.+++......++.+ |..|-+....+...-+. .....+++.+-..++|....|+.+.-
T Consensus 102 vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~------~~~~~if~i~E~~l~d~e~fV~KAig 175 (222)
T COG4912 102 VVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT------LDLLEIFEIIELLLGDKEFFVQKAIG 175 (222)
T ss_pred HHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHccChHHHHHHHHH
Confidence 556666555434566667776644444443 66666666666554443 23347889999999999999999999
Q ss_pred HHHHHhHhhh
Q 001249 440 NAIGQLSTDL 449 (1114)
Q Consensus 440 ~~l~~l~~~~ 449 (1114)
|+|.+++.+.
T Consensus 176 WaLrq~~k~~ 185 (222)
T COG4912 176 WALRQIGKHS 185 (222)
T ss_pred HHHHHHHhhc
Confidence 9999998743
No 324
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=69.90 E-value=1.1e+02 Score=29.49 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=66.0
Q ss_pred ChhhHHHHHHHHHHhhhhhhhhhh---h-------hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHH
Q 001249 156 SVKLQESAFLIFAQLSQYIGDTLT---P-------HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF 225 (1114)
Q Consensus 156 ~~~~r~~al~~l~~l~~~~~~~~~---~-------~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 225 (1114)
+...|..++.++..+.+..+..+. . .-..+++.+.+.+.++ +..+-..+++.+..++..+. ..+
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~-~~~i~~~slri~~~l~~~~~-----~~L 108 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS-DFPIFSRSLRIFLTLLSRFR-----SHL 108 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHH-----HHH
Confidence 446778899999999988776655 1 1256777777777776 68888889999999887752 222
Q ss_pred HhhHHHHHHHHHH-HHhCCC--HHHHHHHHHHHHHHHc
Q 001249 226 QDLLPLMMRTLTE-SLNNGN--EATAQEALELLIELAG 260 (1114)
Q Consensus 226 ~~l~p~ll~~l~~-~~~~~~--~~~~~~~~~~l~~l~~ 260 (1114)
..-+..++..+.. .+.+.. ...+..+++++..++.
T Consensus 109 k~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 109 KLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 2223334443333 333322 3577788999988886
No 325
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=68.85 E-value=1.5e+02 Score=30.61 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=46.9
Q ss_pred hHHHHHHhhcC-CChhhHHHHHHHHHHhhhhhhhhhhhhH--HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001249 144 LLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1114)
Q Consensus 144 ll~~l~~~~~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1114)
+.|++-...++ +-+..|-.++-+++.+.+....+...++ .+++|.+++.+..+ +.-.+..|.-.+..++..
T Consensus 96 LyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKIL~d 169 (262)
T PF04078_consen 96 LYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKILLD 169 (262)
T ss_dssp GHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHS
T ss_pred ehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHHHcc
Confidence 34666433333 2467899999999999986544433332 36889999999886 777788888888888764
No 326
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.61 E-value=37 Score=35.31 Aligned_cols=104 Identities=19% Similarity=0.183 Sum_probs=68.7
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhh
Q 001249 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 461 (1114)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~i 461 (1114)
+..++.+.++.+|.+|+..+..+.......+..+-...++.+.+.+.+..+ -.-|+.++..++.... ..+..+..+
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~--l~~~ll~~~ 83 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE--LRKKLLQDL 83 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH--HHHHHHHHH
Confidence 456778899999999987766665443344555666788888889998887 4445667777775432 212334446
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001249 462 LPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1114)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1114)
+..++..+.+ +.+......|..+.++..
T Consensus 84 ~k~l~~~~~~-p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 84 LKVLMDMLTD-PQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHhcC-cccchHHHHHHHHHHhcc
Confidence 6666777777 555556667777776654
No 327
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.39 E-value=3.2e+02 Score=34.41 Aligned_cols=126 Identities=14% Similarity=0.221 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhHHHHHH-HHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC
Q 001249 394 HHAALIALAQIAEGCAKVMVKNLEQVLS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (1114)
Q Consensus 394 r~aal~~l~~l~~~~~~~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~ 472 (1114)
|...+.......+...+.+...+..++. .++...+|-.|.+|..|...||..+...+..+. -...+..+-=.|.|
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl---~dsYLKYiGWtLsD- 337 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFL---SDSYLKYIGWTLSD- 337 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHh---cchHHHHhcceeec-
Confidence 5666666666665555555556666654 445677999999999999999998887776552 34556666667888
Q ss_pred CChhHHHHHHHHHHHhhhcCCcccccCchHHHHH----HHHHHh-hcCChhHHHHHHHH
Q 001249 473 QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS----KLLVLL-QNGKQMVQEGALTA 526 (1114)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~----~L~~~l-~~~~~~v~~~al~~ 526 (1114)
.+..||..+..+|..+.+.-. ..+.+..+.. +++... .+.+..||...+..
T Consensus 338 k~~~VRl~~lkaL~~L~e~~~---~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~ 393 (1048)
T KOG2011|consen 338 KNGTVRLRCLKALIKLYEKDE---DKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVL 393 (1048)
T ss_pred CccHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence 899999999999999988721 2333443333 333333 34455566544443
No 328
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.64 E-value=1.6e+02 Score=36.95 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=78.8
Q ss_pred cCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHH
Q 001249 153 SSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLM 232 (1114)
Q Consensus 153 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~l 232 (1114)
.+-++..|..++.-|+..+...|+.|.. ...+..+.=+|.|. +..||...+++|..+.+.-... ..+..+...+
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~--dsYLKYiGWtLsDk-~~~VRl~~lkaL~~L~e~~~~~---~~L~lFtsRF 370 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLS--DSYLKYIGWTLSDK-NGTVRLRCLKALIKLYEKDEDK---DKLELFTSRF 370 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhc--chHHHHhcceeecC-ccHHHHHHHHHHHHHHhccccc---hHHHHHHHHH
Confidence 3567889999999999999988887532 33445555667886 9999999999999998863211 2222223333
Q ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHHHHccchHHH-HHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 001249 233 MRTLTESL-NNGNEATAQEALELLIELAGTEPRFL-RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1114)
Q Consensus 233 l~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l 301 (1114)
=..+.+.. .+-+..++..++....... .+..+ .+-+..+...++ +.+..++..|.+++..-
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~~--~~g~L~d~di~~Vy~Li~------d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLLS--SSGLLSDKDILIVYSLIY------DSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHh--cccccChhHHHHHHHHHh------ccCcchHHHHHHHHHHH
Confidence 33333333 2345555555544433321 12222 122223333332 34567788888877653
No 329
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=67.61 E-value=6.8 Score=26.71 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHhH
Q 001249 419 VLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1114)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1114)
.++.+.+.+++.++.++..++++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5667777778889999999999999875
No 330
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=67.36 E-value=19 Score=40.16 Aligned_cols=137 Identities=13% Similarity=0.151 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccC
Q 001249 394 HHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDD 471 (1114)
Q Consensus 394 r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~ 471 (1114)
-.|++.+|..++.+..-.-.... ..+.+.++..|.+|+.+|...+.-.+..+.-.+.+-- ..+ -..++..+.+.+..
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~-~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLG-AGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchH-HHHHHhhHHHHHHHHhhc
Confidence 34666677666665432111222 2578889999999888888776666665554443321 222 34677777777776
Q ss_pred CCChhHHHHHHHHHHHhhhcCCcc-cccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001249 472 FQNPRVQAHAASAVLNFSENCTPE-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1114)
Q Consensus 472 ~~~~~v~~~a~~al~~l~~~~~~~-~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~ 532 (1114)
.+..+|....|.+..+.-++..+ .+.+.-..=++.++...+++...|+++.+..+..+.-
T Consensus 485 -KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 485 -KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred -chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 67788999999999888777643 2333333347888999999999999999999988754
No 331
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=66.00 E-value=7.9 Score=26.39 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.3
Q ss_pred HHHHHHHhccCCChhHHhhhhHHHHHHH
Q 001249 924 YLPFLLEACNDENQDVRQAAVYGLGVCA 951 (1114)
Q Consensus 924 i~~~ll~~l~~~~~~vr~~a~~~lg~l~ 951 (1114)
.+|.+++.+.++++.++..++++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677888888889999999999999885
No 332
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=65.96 E-value=76 Score=38.40 Aligned_cols=76 Identities=9% Similarity=-0.005 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHhhhchhhhHHH-HHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhc
Q 001249 857 FDQVGEILGTLIKTFKAAFLPFFDE-LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAC 932 (1114)
Q Consensus 857 ~~~~~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l 932 (1114)
+-.+..+++.+++..+...-...+. +++.+++.+..+.+...-..|+.+|--++-.++..+.+|++.++..+...+
T Consensus 85 Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 85 RLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 3347788899999888776555553 777777777778888888899999999999998888889999999887765
No 333
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=65.85 E-value=47 Score=31.88 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=60.9
Q ss_pred ChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
+|..+..++.++--.|.+..+++...|.++..-+|+. -+++|.. -.++.+|++|...|++ +++
T Consensus 37 ~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~----aLeLL~~~f~d~~VR~yAV~~L~~------------~sd 100 (171)
T cd00872 37 KPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQ----ALELLDCNFPDEHVREFAVRCLEK------------LSD 100 (171)
T ss_pred CcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHH----HHHHCCCcCCCHHHHHHHHHHHHh------------CCH
Confidence 5677888888877778888888888888886644443 4566654 4569999999999887 456
Q ss_pred HHHHHHHHHHHHHHhhch
Q 001249 99 HTQSSLKSMLLQSIQLES 116 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~ 116 (1114)
+.......+|.|+|+-|+
T Consensus 101 ~eL~~yL~QLVQaLKyE~ 118 (171)
T cd00872 101 DELLQYLLQLVQVLKYEP 118 (171)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 666777778888888764
No 334
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=64.91 E-value=23 Score=35.22 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=49.5
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhch
Q 001249 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1114)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1114)
+.+..+..|++.-.|.+|...+...... ....+.+++.+...+.|++..||.+..|+|..++...+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~ 174 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPE 174 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 5677788887755555555554433322 246788889999999999999999999999999876443
No 335
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=64.47 E-value=2.9e+02 Score=32.46 Aligned_cols=73 Identities=18% Similarity=0.298 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhh-hHHHHHHHHHHhhc
Q 001249 120 ISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLHAVFLNCLT 194 (1114)
Q Consensus 120 vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~ 194 (1114)
+-..++..+..++.. .+...|+++=..|.+.+-+++.-..+.++++..-++++...++-. |+..+.. +.+.+.
T Consensus 244 lY~~vl~~Lctfi~~-~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~-Lik~lp 317 (559)
T PF14868_consen 244 LYQHVLVHLCTFIAS-LSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAH-LIKSLP 317 (559)
T ss_pred HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH-HHHHcC
Confidence 334455556555544 455699999999999999999988999999988888776655433 4555554 444443
No 336
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=63.82 E-value=19 Score=28.75 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhcCC-CCChhHHHHHHHHHHHhHhhh
Q 001249 393 KHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDL 449 (1114)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~ 449 (1114)
.+.+++.++|.++..... ..+++ .+++.+++... .+...+|..|+++|+.++...
T Consensus 3 ~lKaaLWaighIgss~~G--~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG--IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHH--HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 467899999999875332 12222 46776666554 688899999999999998653
No 337
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=63.66 E-value=1.8e+02 Score=29.89 Aligned_cols=127 Identities=14% Similarity=0.272 Sum_probs=73.9
Q ss_pred hcCCCChHHHHHHHHHHHHHHHh----cCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc------
Q 001249 193 LTNSNNPDVKIAALNAVINFIQC----LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE------ 262 (1114)
Q Consensus 193 l~~~~~~~vr~~a~~~l~~l~~~----~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~------ 262 (1114)
++++ ++.|.+.++.|...+... +......+..-..+..+=..+...+.+.++.++..++..+..++-..
T Consensus 2 l~d~-d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 2 LNDE-DPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp CT-S-SHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCC-cHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4665 888888888888877654 31111111111112222333444456778889988888876654321
Q ss_pred ------------------------hHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhh
Q 001249 263 ------------------------PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQF 318 (1114)
Q Consensus 263 ------------------------~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 318 (1114)
+..+..--..+++.++..+.....+..+-..++..+..+++. . +.|
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~---R-------P~~ 150 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ---R-------PQF 150 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH---S-------GGG
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH---h-------hHH
Confidence 112333345677788887765544566667778888888872 2 457
Q ss_pred HHHHHHHHHHhh
Q 001249 319 INRLFAILMSML 330 (1114)
Q Consensus 319 ~~~l~~~l~~~l 330 (1114)
...+++.+..+-
T Consensus 151 ~~~Il~~ll~~~ 162 (239)
T PF11935_consen 151 MSRILPALLSFN 162 (239)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 788888887763
No 338
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=63.50 E-value=2.3e+02 Score=30.96 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHH----HHHHHHHhccC--Ccc---------hhHHHHHH
Q 001249 231 LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDV----VGSMLQIAEAE--SLE---------EGTRHLAI 295 (1114)
Q Consensus 231 ~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l----~~~ll~~~~~~--~~~---------~~vr~~a~ 295 (1114)
.-++.+...+++........++.++.+++...+......+-.- .+.+-+++... +.+ .++|...+
T Consensus 56 ~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI 135 (330)
T PF11707_consen 56 NHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI 135 (330)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence 3466677777777788888999999999984443322222111 11122222110 111 28999999
Q ss_pred HHHHHHHHh
Q 001249 296 EFVITLAEA 304 (1114)
Q Consensus 296 ~~l~~l~~~ 304 (1114)
.||.++.+.
T Consensus 136 ~F~Lsfl~~ 144 (330)
T PF11707_consen 136 RFWLSFLSS 144 (330)
T ss_pred HHHHHHHcc
Confidence 999999984
No 339
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=63.36 E-value=1.8e+02 Score=29.63 Aligned_cols=168 Identities=14% Similarity=0.107 Sum_probs=92.3
Q ss_pred hhHHHHHHHhhcCCCchHH-HHHHHHHHHHhhcCC--CCCChhhhhhHHHHHHHHHHHHhhcCCCC----C-HhhHHHHH
Q 001249 943 AVYGLGVCAEFGGSVVKPL-VGEALSRLNVVIRHP--NALQPENLMAYDNAVSALGKICQFHRDSI----D-AAQVVPAW 1014 (1114)
Q Consensus 943 a~~~lg~l~~~~~~~~~~~-~~~~l~~L~~~l~~~--~~~~~~~~~~~~na~~al~~l~~~~~~~~----~-~~~~~~~~ 1014 (1114)
++.++-.+....+-.+.++ ++.+++.+..+.... ....+....+-...+..++.++.+++..+ | +-.++..+
T Consensus 8 ~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~L 87 (223)
T PF10441_consen 8 ILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQRL 87 (223)
T ss_pred HHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHHH
Confidence 4445555555554444444 566777777666532 12223456777778888888888876654 2 23344444
Q ss_pred HhcCC------CCC---cHH---HHHHHHHHHHHHHhhcCCcccC-----------------cCcCchhHHHHHHHHHhc
Q 001249 1015 LNCLP------IKG---DLI---EAKIVHEQLCSMVERSDSDLLG-----------------PNHQYLPKIVSVFAEILC 1065 (1114)
Q Consensus 1015 l~~Lp------~~~---d~~---e~~~~~~~l~~l~~~~~~~~~~-----------------~~~~~l~~i~~~~~~~l~ 1065 (1114)
|..|- -.. ... ++....+.|..+++. ..+-. .-..|++-++--+.....
T Consensus 88 L~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep--~~~~~~~~~~~~l~~~~~~~k~~~~kh~~~lL~~Yi~~~~ 165 (223)
T PF10441_consen 88 LRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEP--SSVSRSSKKTSSLTSATSSAKKSLRKHAPYLLANYISLQL 165 (223)
T ss_pred HHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCc--ccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44432 001 111 133333444444432 00000 000134433332223322
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhh
Q 001249 1066 GKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSIL 1113 (1114)
Q Consensus 1066 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 1113 (1114)
+.. -+.+++..+...+..+-...++...+.+.+.|+...|..++.++
T Consensus 166 ~~~-l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~Ly 212 (223)
T PF10441_consen 166 KYT-LPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKSLY 212 (223)
T ss_pred cCC-CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHHHH
Confidence 233 35678888888888887777777799999999999999988876
No 340
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=62.95 E-value=1.2e+02 Score=28.22 Aligned_cols=93 Identities=15% Similarity=0.095 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHhhhhhhhhhH--hhhhHH-HHHHHhhccCccchhhhHHHHHHHHHHH
Q 001249 501 LDGIVSKLLVLLQ-NGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPF-LKAILVNATDKSNRMLRAKSMECISLVG 576 (1114)
Q Consensus 501 l~~il~~L~~~l~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~-L~~~l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1114)
-...+..|.+-++ +.++.+...|+..+.+++..+|..|...+ ..++.. |...+....+ ....++.++++.+...+
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~-~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNN-PPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCC-CcHHHHHHHHHHHHHHH
Confidence 3456777777776 46788888999999999999998776433 245654 6666543211 23468888888888888
Q ss_pred HHhchhhhhhhHHHHHHH
Q 001249 577 MAVGKDKFRDDAKQVMEV 594 (1114)
Q Consensus 577 ~~~~~~~f~~~~~~i~~~ 594 (1114)
.+++.+.=.+++..+++.
T Consensus 115 ~~f~~~~~l~~i~~~y~~ 132 (141)
T cd03565 115 DAFRGSPDLTGVVEVYEE 132 (141)
T ss_pred HHhCCCccchHHHHHHHH
Confidence 777533222333444443
No 341
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=62.84 E-value=1.7e+02 Score=29.11 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhH
Q 001249 397 ALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1114)
Q Consensus 397 al~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1114)
.+..++.+.+.++....+.+..++..+-..-.+++...|..+-.++|...+.+||+.
T Consensus 20 vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~ 76 (198)
T PF08161_consen 20 VLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQ 76 (198)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHH
Confidence 344445555554444446677777777777777778889999999999999999854
No 342
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=62.83 E-value=2.3e+02 Score=30.82 Aligned_cols=188 Identities=16% Similarity=0.149 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHH---HHHHHHHhh-chhhhHHHHHHHHHHHHHhcccCCC--Cc
Q 001249 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLK---SMLLQSIQL-ESAKSISKKLCDTVSELASNILPEN--GW 141 (1114)
Q Consensus 68 ~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~---~~ll~~l~~-e~~~~vr~~~~~~i~~ia~~~~~~~--~w 141 (1114)
.-+-+.|.-++.++.+.+...... +..+ ..+++- ..++..|.. =.++++--..+.++..+++++.-.. -+
T Consensus 87 ~L~fEsrKdv~~if~~llr~~~~~---~~~p-~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~~~iL~ 162 (335)
T PF08569_consen 87 KLDFESRKDVAQIFSNLLRRQIGS---RSPP-TVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLAKIILY 162 (335)
T ss_dssp GS-HHHHHHHHHHHHHHHT--BTT---B--H-HHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHT
T ss_pred hCCCcccccHHHHHHHHHhhccCC---CCCc-hHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHHHHHhC
Confidence 456788888888888888764111 1101 122221 223333332 1244455555666666655421000 11
Q ss_pred hhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhh----hhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcC
Q 001249 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI----GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1114)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~----~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (1114)
++.+-.+++.++.++=++-..|+..+..+.... .+.+..+++.++..+.+.+.++ +..+|..+++.|+.++..-.
T Consensus 163 ~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL~ellldr~ 241 (335)
T PF08569_consen 163 SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLLGELLLDRS 241 (335)
T ss_dssp SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHHHHHHHSGG
T ss_pred cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHHHHHHHchh
Confidence 334444777888888888788888888877653 3345567888999999999997 99999999999999986421
Q ss_pred CcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001249 218 SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1114)
Q Consensus 218 ~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 261 (1114)
.......+. -=|.-+..+..++.+....++..|+.+|--++..
T Consensus 242 n~~vm~~yi-~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 242 NFNVMTRYI-SSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp GHHHHHHHT-T-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHH-CCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 100000111 1124455666667788888888888887766643
No 343
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=61.94 E-value=68 Score=35.18 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=50.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHhHhhhhhhhh-hHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCch
Q 001249 891 GKDKTAEERRIAICIFDDVAEQCREAALKY-YETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVK 959 (1114)
Q Consensus 891 ~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~-~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~ 959 (1114)
+.....+.....+++++.++++..+..... ....+..++-.++..+|.+-+.++.+||.++.+++...+
T Consensus 231 K~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~q 300 (832)
T KOG3678|consen 231 KEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQ 300 (832)
T ss_pred hhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHH
Confidence 344556666677889999998876654432 234455566667788899999999999999999986543
No 344
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=61.92 E-value=1.2e+02 Score=34.20 Aligned_cols=155 Identities=12% Similarity=0.101 Sum_probs=89.8
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhh
Q 001249 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1114)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1114)
+.+.+.+.+++|+..+...+...+...+-.....-...+ ..++..+.+.+...+...|..+.|.+..+.-.++...+-+
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~ 511 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFK 511 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhh
Confidence 344455566666655544444333333222222112233 3577777777777777899999999988877776554223
Q ss_pred h-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc-----ccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHH
Q 001249 457 F-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-----EILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALA 528 (1114)
Q Consensus 457 ~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~-----~~l~~~l--~~il~~L~~~l~~~~~~v~~~al~~l~ 528 (1114)
. ...=+..++...+| +.+.|++.+...|.+|.-+... +.+-... .-+...|..-+...++-.-...+..+-
T Consensus 512 ~Lakig~~kvl~~~ND-pc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv 590 (743)
T COG5369 512 FLAKIGVEKVLSYTND-PCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILV 590 (743)
T ss_pred hHHhcCHHHHHHHhcC-cccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHH
Confidence 3 33446677888899 9999999999999998653322 1111111 124455555555555544444455554
Q ss_pred HHHHh
Q 001249 529 SVADS 533 (1114)
Q Consensus 529 ~l~~~ 533 (1114)
.++.+
T Consensus 591 ~~aa~ 595 (743)
T COG5369 591 RNAAC 595 (743)
T ss_pred HHHhc
Confidence 44443
No 345
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=61.69 E-value=16 Score=25.38 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001249 182 LKHLHAVFLNCLTNSNNPDVKIAALNAV 209 (1114)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l 209 (1114)
.+.+...+...+.|+ ++.||.+|++.+
T Consensus 16 ~~~v~~~i~~rl~D~-s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDS-SPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCC-ChHHHHHHHHHC
Confidence 347778889999997 999999998753
No 346
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=60.57 E-value=2.7e+02 Score=30.88 Aligned_cols=217 Identities=19% Similarity=0.204 Sum_probs=123.3
Q ss_pred HHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHH---------HHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001249 30 HLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAH---------LLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1114)
Q Consensus 30 ~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~---------il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~ 99 (1114)
.+++++.++|..|-..+..+-. +++. +..+.+ -|.. ..+..-|..|..+.|+.+..+.. -..++
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~-d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~--~~~~~-- 106 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLIS-DEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG--PKEIP-- 106 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHc-CHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC--cccCC--
Confidence 5677888999999988887766 5554 233332 1222 44567799999999999876310 11233
Q ss_pred HHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhh--hh
Q 001249 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG--DT 177 (1114)
Q Consensus 100 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~--~~ 177 (1114)
..+.+.+.....+ ++...|+..-.++.+++-..-.--.+-.-+..+.+.+.++....-+..+.++-.+.+.-. ..
T Consensus 107 --~~vvralvaiae~-~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~y 183 (371)
T PF14664_consen 107 --RGVVRALVAIAEH-EDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKY 183 (371)
T ss_pred --HHHHHHHHHHHhC-CchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhh
Confidence 3444555555555 677889988888888876421101233445666666655444455555555555554321 11
Q ss_pred hhh--hHHHHHHHHHHh----hcCCCCh--HHHHHHHHHHHHHHHhcCCcc--hHhHHHhhHHHHHHHHHHHHhCCCHHH
Q 001249 178 LTP--HLKHLHAVFLNC----LTNSNNP--DVKIAALNAVINFIQCLTSSA--DRDRFQDLLPLMMRTLTESLNNGNEAT 247 (1114)
Q Consensus 178 ~~~--~~~~l~~~l~~~----l~~~~~~--~vr~~a~~~l~~l~~~~~~~~--~~~~~~~l~p~ll~~l~~~~~~~~~~~ 247 (1114)
+.+ .++.++..|... ..+ +. +.-..+..++..++...++-. ..+.+ .-++.+...+.-+.++.
T Consensus 184 l~~~~dL~~l~apftd~~~~~~~~--~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~-----~~lksLv~~L~~p~~~i 256 (371)
T PF14664_consen 184 LRPGFDLESLLAPFTDFHYRKIKD--DRELERLQASAKAISTLLRSWPGLLYLSMNDF-----RGLKSLVDSLRLPNPEI 256 (371)
T ss_pred hcCCccHHHHHHhhhhhhcccccc--chHHHHHHHHHHHHHHHHhcCCceeeeecCCc-----hHHHHHHHHHcCCCHHH
Confidence 222 345555555544 122 22 233456677777776654211 00111 23444555566677888
Q ss_pred HHHHHHHHHHHHccc
Q 001249 248 AQEALELLIELAGTE 262 (1114)
Q Consensus 248 ~~~~~~~l~~l~~~~ 262 (1114)
|...+..|.++....
T Consensus 257 r~~Ildll~dllrik 271 (371)
T PF14664_consen 257 RKAILDLLFDLLRIK 271 (371)
T ss_pred HHHHHHHHHHHHCCC
Confidence 888888887776643
No 347
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=59.82 E-value=88 Score=33.74 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=64.9
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhcCC-CCC
Q 001249 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFR-DPH 431 (1114)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~-d~~ 431 (1114)
|..-.++.+.+.+.. ..-...+.++...+++.++++..-|+..+++++.+|++.+...+. .+...+...+. ..+
T Consensus 26 W~~IlDvCD~v~~~~---~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h 102 (462)
T KOG2199|consen 26 WSLILDVCDKVGSDP---DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAH 102 (462)
T ss_pred HHHHHHHHHhhcCCC---cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhccc
Confidence 544445555554332 233446677778888999999999999999999999986665432 34444555555 678
Q ss_pred hhHHHHHHHHHHHhHhhhch
Q 001249 432 PRVRWAAINAIGQLSTDLGP 451 (1114)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~ 451 (1114)
+.|+......+..+++.+..
T Consensus 103 ~kV~~k~~~lv~eWsee~K~ 122 (462)
T KOG2199|consen 103 PKVCEKMRDLVKEWSEEFKK 122 (462)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 88888877777777776653
No 348
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=58.84 E-value=72 Score=30.51 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001249 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1114)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~ 99 (1114)
+..+..+|.+.-=.|....+++.+.|.++..-+|+ .-+++|.. -.++.+|++|...|++ ++++
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~----~aLeLL~~~f~~~~VR~yAV~~L~~------------~sd~ 108 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIE----DALELLSPYFTNPVVRKYAVSRLKL------------ASDE 108 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHH----HHHHHcCccCCCHHHHHHHHHHHHh------------CCHH
Confidence 44555556555334556677777777777653333 34555554 4468889998888886 3466
Q ss_pred HHHHHHHHHHHHHhhch
Q 001249 100 TQSSLKSMLLQSIQLES 116 (1114)
Q Consensus 100 ~~~~i~~~ll~~l~~e~ 116 (1114)
.......+|.++|.-|.
T Consensus 109 eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 109 ELLLYLLQLVQALKYEN 125 (166)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 66666677888888764
No 349
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=58.57 E-value=96 Score=41.08 Aligned_cols=166 Identities=19% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHH
Q 001249 400 ALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQA 479 (1114)
Q Consensus 400 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~ 479 (1114)
.+.....+....+.+|++.++...-..+.++++.|+.-+......+...+. .-+-..++..|+..+.+ .+..-..
T Consensus 417 ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd----s~~qqeVv~~Lvthi~s-g~~~ev~ 491 (1426)
T PF14631_consen 417 LLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD----SYCQQEVVGALVTHIGS-GNSQEVD 491 (1426)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHcC-CcHHHHH
Q ss_pred HHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCc
Q 001249 480 HAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDK 559 (1114)
Q Consensus 480 ~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~ 559 (1114)
+|...|..++...+ +.+.|| ..++..++..+++-+..--...+..++.++......-....+.+.-.+.+-+.+...
T Consensus 492 ~aL~vL~~L~~~~~-~~l~~f-a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~- 568 (1426)
T PF14631_consen 492 AALDVLCELAEKNP-SELQPF-ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNP- 568 (1426)
T ss_dssp HHHHHHHHHHHH-H-HHHHHT-HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSH-
T ss_pred HHHHHHHHHHhccH-HHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcH-
Q ss_pred cchhhhHHHHHHHHHHHHH
Q 001249 560 SNRMLRAKSMECISLVGMA 578 (1114)
Q Consensus 560 ~~~~lr~~a~~~l~~i~~~ 578 (1114)
+.+-+..||.+...
T Consensus 569 -----~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 569 -----KYKRIGIIGAVMMI 582 (1426)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHhHHHHHHHH
No 350
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=57.20 E-value=49 Score=29.69 Aligned_cols=74 Identities=12% Similarity=0.240 Sum_probs=53.4
Q ss_pred HhHHHHHHHHHhcCC-CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC
Q 001249 414 KNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1114)
Q Consensus 414 ~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1114)
.+++.++|.+..++. ...+..|-++...++.++...+-. .+.++.++..+++.... ... ...+..++..++..-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~--~~~l~~l~~~i~~~~~~-~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS--DEVLNALMESILKNWTQ-ETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHHHhcccc-chh--HHHHHHHHHHHHHcc
Confidence 467889999999999 888999999999999999765422 34556666666666655 222 356667777777554
No 351
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=56.57 E-value=32 Score=27.44 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhHhhhchhHHhhhh--hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001249 435 RWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1114)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1114)
.++|+|++|.++..-. .+ .++ ..+++.+++.....+...+|..|..+|+-+...
T Consensus 4 lKaaLWaighIgss~~-G~--~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPL-GI--QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChH-HH--HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 5689999999986421 11 333 368999998887658889999999999887654
No 352
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=56.35 E-value=4e+02 Score=31.40 Aligned_cols=61 Identities=11% Similarity=0.212 Sum_probs=39.3
Q ss_pred hhhhhhhHHHHHHHHHHHhcC-CCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHh
Q 001249 581 KDKFRDDAKQVMEVLMSLQGS-QMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQS 642 (1114)
Q Consensus 581 ~~~f~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~ 642 (1114)
.....|.+.+++++.+.+..- .....-|+|-.++..+..++...| .|.|..|.+++.+-..
T Consensus 415 ~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg-~fIPi~~ll~Eml~~~ 476 (661)
T KOG2256|consen 415 ASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSG-TFIPLSPLLVEMLKSV 476 (661)
T ss_pred HhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcC-ceeecHHHHHHHHHHh
Confidence 345667777777776663321 122345789999999999988876 4677776665544333
No 353
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=55.29 E-value=3.1e+02 Score=29.91 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHH
Q 001249 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLR 742 (1114)
Q Consensus 685 ~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~ 742 (1114)
..+|..|-+++..+.+.++ ......+..=+.++++. .-.||..|++-|+.++.
T Consensus 38 ~k~k~lasq~ip~~fk~fp----~la~~a~da~~d~~ed~-d~~ir~qaik~lp~fc~ 90 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFP----SLADEAIDAQLDLCEDD-DVGIRRQAIKGLPLFCK 90 (460)
T ss_pred hHHHHHHHHHHHHHHhhCc----hhhhHHHHhhhcccccc-chhhHHHHHhccchhcc
Confidence 4578888888888877532 22344555556666664 77899999999998865
No 354
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=55.13 E-value=91 Score=29.35 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
++..+..+|+.+--.+.+.++++.+.|.....-+|.. -+++|.. -.++.+|++|...|++ +++
T Consensus 37 ~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~----aL~LL~~~~~~~~vr~yAv~~L~~------------~~~ 100 (152)
T cd00864 37 VPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPED----ALELLSPKYPDPVVRQYAVRVLES------------ASD 100 (152)
T ss_pred ChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHH----HHHHcCCcCCCHHHHHHHHHHHHh------------CCH
Confidence 4567777787777777788888888887765434433 3455554 4569999999988886 456
Q ss_pred HHHHHHHHHHHHHHhhch
Q 001249 99 HTQSSLKSMLLQSIQLES 116 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~ 116 (1114)
+.......+|.|+|.-|+
T Consensus 101 ~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 101 DELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 667777788888888764
No 355
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.04 E-value=6e+02 Score=33.65 Aligned_cols=78 Identities=13% Similarity=0.196 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhcH---HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhcc
Q 001249 394 HHAALIALAQIAEGCA---KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMD 470 (1114)
Q Consensus 394 r~aal~~l~~l~~~~~---~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~ 470 (1114)
......++..++.-.. +.+...++.++..+..+...++..+-.....|+.++....+..+....++.+...+.+..+
T Consensus 1242 ~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~ 1321 (1514)
T KOG0929|consen 1242 STTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFK 1321 (1514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHH
Confidence 3444555555554333 3444566777778888888899999899999999999888877766667777777766655
Q ss_pred C
Q 001249 471 D 471 (1114)
Q Consensus 471 ~ 471 (1114)
-
T Consensus 1322 ~ 1322 (1514)
T KOG0929|consen 1322 T 1322 (1514)
T ss_pred h
Confidence 4
No 356
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=54.61 E-value=43 Score=32.87 Aligned_cols=58 Identities=9% Similarity=0.102 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhhh--hHhHHHHHHHhccCCChhHHhhhhHHHHHHHhh
Q 001249 896 AEERRIAICIFDDVAEQCREAALKY--YETYLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1114)
Q Consensus 896 ~~~r~~a~~~l~~~~~~~~~~~~~~--~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1114)
.-.|..+++++|.++++-.+.+..+ -.+++|..++-+...+.--+..|++.+|.+...
T Consensus 160 EyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~d 219 (315)
T COG5209 160 EYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGD 219 (315)
T ss_pred ceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 4468899999999999988887764 468999999999988888888888888887543
No 357
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=54.45 E-value=2e+02 Score=31.53 Aligned_cols=249 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHH
Q 001249 27 LISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKS 106 (1114)
Q Consensus 27 ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~ 106 (1114)
+|+-+.|||-+..-+..= -+..|+..|+.++ ++.+|.-|.+--.+|.+...+ +...-+=.+..+-+
T Consensus 156 ~Lrf~~sp~~d~~vaK~y--------id~~FvlkLLdLF-dSEDpRERe~LKT~LhrIygK-----fl~~r~firk~iNN 221 (457)
T KOG2085|consen 156 LLRFLESPDFDPSVAKKY--------IDQKFVLKLLDLF-DSEDPREREFLKTILHRIYGK-----FLVHRPFIRKSINN 221 (457)
T ss_pred HHHHHhCcccCHHHHHHH--------hhHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHH-----HhhhHHHHHHhhcc
Q ss_pred HHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchh-------hHHHHHHhhcC-CChhhHHHHHHHHHHhhhhhhhhh
Q 001249 107 MLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE-------LLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTL 178 (1114)
Q Consensus 107 ~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~-------ll~~l~~~~~~-~~~~~r~~al~~l~~l~~~~~~~~ 178 (1114)
.+++.+.. +.+.. .+++.+..+.+...+ -..|. +...|+.+-+. .-.....--.+++..+.+..+.-
T Consensus 222 if~~FIyE-te~hn--GIaELLEIlgSiIng-fAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl- 296 (457)
T KOG2085|consen 222 IFLRFIYE-TERHN--GIAELLEILGSIING-FALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKL- 296 (457)
T ss_pred hhhhhccc-ccccC--CHHHHHHHHHHhcCc-ccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeeccCccc-
Q ss_pred hhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001249 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1114)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l 258 (1114)
.+.++..+++.---. +..-+..-+.-+..+++.+ .+..|+.++-.+.+.+..++.++...++..|+..|..=
T Consensus 297 ---~~~VIrglLK~WP~t-nS~KEVmFL~ElEEILe~i----ep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe 368 (457)
T KOG2085|consen 297 ---TETVIRGLLKYWPKT-NSSKEVMFLNELEEILEVI----EPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNE 368 (457)
T ss_pred ---cHHHHHHHHHhcCCC-CCcceeeeHhhHHHHHHhc----CHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhH
Q ss_pred --HccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHH
Q 001249 259 --AGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1114)
Q Consensus 259 --~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1114)
.......-...++.+++.+..... .+.+..+...++..+..+.+
T Consensus 369 ~i~~Li~~n~~~ilPiiFpaLyr~sk-~hWN~~i~~l~~nvlk~f~e 414 (457)
T KOG2085|consen 369 YIRSLISQNAEVILPIVFPALYRNSK-SHWNQAIHNLILNVLKTFME 414 (457)
T ss_pred HHHHHHHhccceeeehhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
No 358
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=53.88 E-value=5.2e+02 Score=31.99 Aligned_cols=77 Identities=14% Similarity=0.256 Sum_probs=45.2
Q ss_pred CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHH-hhc----cCCCChhHHHHHHHHHHHhhhcCCcccccCchHH
Q 001249 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA-GAM----DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 503 (1114)
Q Consensus 429 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~-~~l----~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~ 503 (1114)
+.+..||-.....+..+..... ..|-.+|+..+. ..+ -+ .+..||..+..+|.++++.|.... ---+-+
T Consensus 441 ~s~~~Vrik~~~~l~~~~l~nr----~~yeeEIL~~VvL~~lshi~L~-~~~qvr~l~~~~l~N~a~~C~t~~-~~~lld 514 (1697)
T KOG3687|consen 441 ESRGAVRIKVLDVLSFVLLINR----QFYEEEILNSVVLSQLSHIPLD-KDHQVRKLATQLLVNLAEGCHTHH-FNSLLD 514 (1697)
T ss_pred cccceEEEeeHHHHHHHHhhhh----hhhHHHhhhheeeEeecccccc-chhHHHHHHHHHHHHHHhhcchhc-chhHHH
Confidence 4555666666666666553332 234444444332 111 12 466899999999999999997542 123445
Q ss_pred HHHHHHHH
Q 001249 504 IVSKLLVL 511 (1114)
Q Consensus 504 il~~L~~~ 511 (1114)
+++.+++-
T Consensus 515 i~EA~~~r 522 (1697)
T KOG3687|consen 515 IIEAVMAR 522 (1697)
T ss_pred HHHHHHhc
Confidence 66666654
No 359
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=53.33 E-value=4.4e+02 Score=31.04 Aligned_cols=180 Identities=12% Similarity=0.111 Sum_probs=92.3
Q ss_pred HhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHH-hhhcC
Q 001249 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN-FSENC 492 (1114)
Q Consensus 414 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~-l~~~~ 492 (1114)
..+..++..++..=......+|..|+.++..++....+.+....+....-..+..-.- .+++. .--...+.+ +++-+
T Consensus 278 k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~-~~~~t-l~~i~Fl~~slvEL~ 355 (661)
T KOG2256|consen 278 KLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKF-VTVNT-LPLINFLQNSLVELL 355 (661)
T ss_pred HHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCC-CCCcc-cchhHHHHHHHHHHh
Confidence 3444555555554455677899999999999988776654333333322222222110 01100 001111211 11212
Q ss_pred Cccc------ccCchHHHHHHHHHHhhcCChhHHHH--------HHHHHHHHHH-hh--hhhhhhhHhhhhHHHHHHHhh
Q 001249 493 TPEI------LTPYLDGIVSKLLVLLQNGKQMVQEG--------ALTALASVAD-SS--QEHFQKYYDAVMPFLKAILVN 555 (1114)
Q Consensus 493 ~~~~------l~~~l~~il~~L~~~l~~~~~~v~~~--------al~~l~~l~~-~~--~~~~~~~~~~i~~~L~~~l~~ 555 (1114)
+-+. ---|+.++--+|-.++...+..-... .+.....+.. .. ...+.|..-.+++.+..++.-
T Consensus 356 ~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirL 435 (661)
T KOG2256|consen 356 GLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRL 435 (661)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhh
Confidence 1110 11345555556666665544322221 2222222222 22 123445444555555555555
Q ss_pred ccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHH
Q 001249 556 ATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1114)
Q Consensus 556 ~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~ 597 (1114)
..++....+|-+++..+-.++++.| .|.|..+-+++++-.
T Consensus 436 ipT~qy~PLRlhcir~Li~Ls~ssg--~fIPi~~ll~Eml~~ 475 (661)
T KOG2256|consen 436 IPTPQYYPLRLHCIRSLISLSRSSG--TFIPLSPLLVEMLKS 475 (661)
T ss_pred cCcccchhHHHHHHHHHHHHHhhcC--ceeecHHHHHHHHHH
Confidence 5667788899998988888888777 477777766666544
No 360
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=52.55 E-value=4.9e+02 Score=31.33 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHH-HHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcc
Q 001249 23 PFETLISHLMSTSNEQRSEAELL-FNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLT 86 (1114)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~-L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~ 86 (1114)
++..+-..+++.+. .|++-.-+ |.-+..++|.-+...+.++|+..++++-...+..++.....
T Consensus 182 ~~~~Lc~~lL~~n~-~r~~w~~rLL~lL~~~~Psi~~~~~~~lL~~A~~~~~l~lli~L~~~~~~ 245 (696)
T PF14838_consen 182 HITELCKELLSLNR-KRQQWAHRLLCLLSSQHPSIAIEAISYLLTKAQNPEHLALLIRLYAGLSV 245 (696)
T ss_pred HHHHHHHHHhccch-HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcCCHHHHHHHHHHHhcccC
Confidence 33444445555533 44333333 33333336766666677777766666666655555555444
No 361
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=51.98 E-value=78 Score=29.86 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHH-HhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHH
Q 001249 563 MLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQ 641 (1114)
Q Consensus 563 ~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~ 641 (1114)
.+-..+++|+-.++..+....|+|...++++.-.. +-.................+..+...++.-|.||...+++...+
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556788888888888888899999999887654 22211111112333445666788888888899999999999887
Q ss_pred hcc
Q 001249 642 SAQ 644 (1114)
Q Consensus 642 ~~~ 644 (1114)
.++
T Consensus 116 ~L~ 118 (153)
T PF08146_consen 116 LLK 118 (153)
T ss_pred HHH
Confidence 774
No 362
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.43 E-value=6.7e+02 Score=32.62 Aligned_cols=153 Identities=10% Similarity=0.158 Sum_probs=86.6
Q ss_pred hhhhHHHHHHHHHHHHHhcccCC--CCchhhHHHHHHhhcCC---ChhhHHHHHHHHHHhhhhhhhhhh-hhHHHHHHHH
Q 001249 116 SAKSISKKLCDTVSELASNILPE--NGWPELLPFMFQCVSSD---SVKLQESAFLIFAQLSQYIGDTLT-PHLKHLHAVF 189 (1114)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~--~~w~~ll~~l~~~~~~~---~~~~r~~al~~l~~l~~~~~~~~~-~~~~~l~~~l 189 (1114)
+..++|...-.++-.|....+.. ..|+.++..+-..+... .......++.+|+.++.++-..+. ..+..++..+
T Consensus 854 ~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl 933 (1610)
T KOG1848|consen 854 RGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTL 933 (1610)
T ss_pred ccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHH
Confidence 34445544434444443322211 24999888888666554 445666788888888877544432 2455555555
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhcCC----------------------cchHhHHHhhHHHHHHHHHHHHhCCCHHH
Q 001249 190 LNCLTNSNNPDVKIAALNAVINFIQCLTS----------------------SADRDRFQDLLPLMMRTLTESLNNGNEAT 247 (1114)
Q Consensus 190 ~~~l~~~~~~~vr~~a~~~l~~l~~~~~~----------------------~~~~~~~~~l~p~ll~~l~~~~~~~~~~~ 247 (1114)
...-....+..+-..|+..+-.+-.++.. +..+.....++=.++..+..+..+...++
T Consensus 934 ~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eV 1013 (1610)
T KOG1848|consen 934 LVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEV 1013 (1610)
T ss_pred HHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHH
Confidence 55444333556666665544433333211 00111122344445556666667777889
Q ss_pred HHHHHHHHHHHHccchHHHHH
Q 001249 248 AQEALELLIELAGTEPRFLRR 268 (1114)
Q Consensus 248 ~~~~~~~l~~l~~~~~~~~~~ 268 (1114)
|..|++.|-.+...++..+++
T Consensus 1014 RngAvqtlfri~~Shg~~l~~ 1034 (1610)
T KOG1848|consen 1014 RNGAVQTLFRIFNSHGSKLGT 1034 (1610)
T ss_pred hhhHHHHHHHHHhhhcccCCh
Confidence 999999988888777655554
No 363
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=51.20 E-value=5.1e+02 Score=31.15 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=68.3
Q ss_pred hhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001249 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE 257 (1114)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~ 257 (1114)
+...+..++..+.....++ -+.|+..+++.+..++..-+ +.-. .++..+...+.+++..+...+-..|..
T Consensus 298 LK~ly~rfievLe~lS~D~-L~~vk~raL~ti~~lL~~kP-----EqE~----~LL~~lVNKlGDpqnKiaskAsylL~~ 367 (988)
T KOG2038|consen 298 LKILYFRFIEVLEELSKDP-LEEVKKRALKTIYDLLTNKP-----EQEN----NLLVLLVNKLGDPQNKIASKASYLLEG 367 (988)
T ss_pred HHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHhCCc-----HHHH----HHHHHHHHhcCCcchhhhhhHHHHHHH
Confidence 3334555666666555665 78999999999999887542 1111 345555555666666677777777777
Q ss_pred HHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHH
Q 001249 258 LAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1114)
Q Consensus 258 l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1114)
+...+|..=.-.+..|-.+++. +..+......|+.|+..+.-
T Consensus 368 L~~~HPnMK~Vvi~EIer~~FR----pn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 368 LLAKHPNMKIVVIDEIERLAFR----PNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred HHhhCCcceeehHHHHHHHHcc----cCccccceeehhhhhhhhHh
Confidence 7766665433334445444443 34455556677777776543
No 364
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=50.38 E-value=3e+02 Score=28.66 Aligned_cols=158 Identities=16% Similarity=0.230 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHHHHHhhcH-------H-HHHHhHHHHHHHHHhcC-CCCChhHHHHHHHHHHHhHhhhc----hhHHhh
Q 001249 390 EWQKHHAALIALAQIAEGCA-------K-VMVKNLEQVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLG----PDLQNQ 456 (1114)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~-------~-~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~ 456 (1114)
.|+.-..+...++.+++.++ . .-.+.+..+-..++..| +-.+..+-..+..++..+|+.+. +.+ ..
T Consensus 60 ~Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l-~~ 138 (255)
T PF10350_consen 60 CWRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPEL-SE 138 (255)
T ss_pred HHHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchH-HH
Confidence 36666666666666664321 0 01123444444444333 23455566667777777777664 333 23
Q ss_pred hhhhhHHHHHhhccCCCCh---hHHHHHH--HHHHHhhhcCCcccccCchHHHHHHHHHHhhcCCh--------hHHHHH
Q 001249 457 FHPQVLPALAGAMDDFQNP---RVQAHAA--SAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ--------MVQEGA 523 (1114)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~---~v~~~a~--~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~--------~v~~~a 523 (1114)
.-...+..++..+...... ..|..|- .++..++..-+.. -.+.++..+..|+...+.+.. .-+..|
T Consensus 139 LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~-~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHA 217 (255)
T PF10350_consen 139 LPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSN-SRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHA 217 (255)
T ss_pred hHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCc-chhHHHHHHHHHHHHhcCCcccccccccchHHHHH
Confidence 3445555566666552011 2443332 3344444443322 126788888888888776533 467778
Q ss_pred HHHHHHHHHhh--hhhhhhhHhhhhHHH
Q 001249 524 LTALASVADSS--QEHFQKYYDAVMPFL 549 (1114)
Q Consensus 524 l~~l~~l~~~~--~~~~~~~~~~i~~~L 549 (1114)
+.++..+.... ++...+|+...+..-
T Consensus 218 lNiLr~if~ds~L~~~~~~yi~~~l~la 245 (255)
T PF10350_consen 218 LNILRAIFRDSKLSEDVSPYIEDALILA 245 (255)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 88888877543 455666766554433
No 365
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=49.80 E-value=4.5e+02 Score=30.12 Aligned_cols=73 Identities=7% Similarity=0.167 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHH
Q 001249 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1114)
Q Consensus 287 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~ 366 (1114)
|..|.+.+..=+.+.++. .. ....|...++..|-.+|...... . .+.+++....++|.+.+..+.
T Consensus 54 DQSVVEIcVtRit~aIRE---T~----siE~YaAaLVDlLd~cL~hnl~p-----~---g~kded~PHaKIAsDi~SSiF 118 (851)
T KOG3723|consen 54 DQSVVEICVTRITTAIRE---TE----SIEKYAAALVDLLDSCLEHNLRP-----F---GKKDEDTPHAKIASDIMSSIF 118 (851)
T ss_pred cchhhhhHHHHHHHHHHh---cc----hHHHHHHHHHHHHHHHHhccCcc-----C---CCCCCCCchhhHHHHHHHHHH
Confidence 455655555555555552 11 12345555666555555432110 0 001123445678999998888
Q ss_pred HHcCCCcc
Q 001249 367 IALGGNTI 374 (1114)
Q Consensus 367 ~~~~~~~~ 374 (1114)
..+....+
T Consensus 119 Lny~K~~~ 126 (851)
T KOG3723|consen 119 LNYNKPPV 126 (851)
T ss_pred HhcCCCCc
Confidence 77654433
No 366
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=49.17 E-value=6e+02 Score=31.34 Aligned_cols=156 Identities=18% Similarity=0.209 Sum_probs=84.4
Q ss_pred cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHhcccCCC----Cc
Q 001249 67 RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILPEN----GW 141 (1114)
Q Consensus 67 ~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e-~~~~vr~~~~~~i~~ia~~~~~~~----~w 141 (1114)
.+.++..+..|-.-||+ |++ +..+...|.+...+. .+-.+|-.+.--+.....+.|... .-
T Consensus 14 qs~~p~s~k~AE~~Lrq---------we~-----q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~ 79 (947)
T COG5657 14 QSPDPPSVKCAEERLRQ---------WEK-----QHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSIL 79 (947)
T ss_pred cCCCCchHhhHHHHHHh---------hhc-----cccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCC
Confidence 36788889999999998 753 223444555555442 244455554444433333322210 00
Q ss_pred h----hhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcC
Q 001249 142 P----ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1114)
Q Consensus 142 ~----~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (1114)
| -+-..++.++-+.+....-.-..+.+.++... +...++++++-+...|++. +..+-...+.++..++..+.
T Consensus 80 p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~D---fPdeWpTL~~DL~~~Ls~~-D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 80 PDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLD---FPDEWPTLVPDLLSLLSEK-DMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred CccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhcc---CcccchhHHHHHHhhhccc-chHHHHHHHHHHHHHHHHHh
Confidence 0 11234444443333333223344555555432 3336888999999989885 66666666666666666543
Q ss_pred Ccc-hHhHHHhhHHHHHHHHHHHH
Q 001249 218 SSA-DRDRFQDLLPLMMRTLTESL 240 (1114)
Q Consensus 218 ~~~-~~~~~~~l~p~ll~~l~~~~ 240 (1114)
.-. ....|....|.+...+.+.+
T Consensus 156 ~l~Rsd~lf~ei~p~L~~~l~pfl 179 (947)
T COG5657 156 RLFRSDALFLEIAPVLLSILCPFL 179 (947)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHH
Confidence 211 33456677777766665544
No 367
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=48.82 E-value=2e+02 Score=26.61 Aligned_cols=81 Identities=15% Similarity=0.301 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 496 (1114)
+.+-..+...|.++++.|+..|+.|+-.+-. +.+ .+|- ..+...++| ...|. .|..|.-.-+...
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~~l-~pY~----d~L~~Lldd---~~frd----eL~~f~~~~~~~~ 80 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD---PYL-TPYK----DNLENLLDD---KTFRD----ELTTFNLSDESSV 80 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHH-HhHH----HHHHHHcCc---chHHH----HHHhhcccCCcCC
Confidence 3455667788999999999999999977532 222 3343 334444544 23333 3344433222221
Q ss_pred c-cCchHHHHHHHHHHh
Q 001249 497 L-TPYLDGIVSKLLVLL 512 (1114)
Q Consensus 497 l-~~~l~~il~~L~~~l 512 (1114)
+ ..+-+.++|.++..+
T Consensus 81 I~~ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 81 IEEEHRPELMPVVLRIL 97 (141)
T ss_pred CCHHHHhHHHHHHHHHH
Confidence 2 235556666666654
No 368
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=48.50 E-value=2.4e+02 Score=26.65 Aligned_cols=100 Identities=9% Similarity=0.035 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhhhchhhhHHH-HHHhHhhhhcCCC-CHHHHHHHHHHHHHHHhHhhhhhhhhh-HhHHHHHHHhcc
Q 001249 857 FDQVGEILGTLIKTFKAAFLPFFDE-LSSYLTPMWGKDK-TAEERRIAICIFDDVAEQCREAALKYY-ETYLPFLLEACN 933 (1114)
Q Consensus 857 ~~~~~~~l~~l~~~~~~~~~~~~~~-l~~~l~~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~~~~-~~i~~~ll~~l~ 933 (1114)
+..+..++..|..+ |---+..+.. ++..+..+++... +.+.-+.|++++..++.+.+....... +-=++.++.+++
T Consensus 34 La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq 112 (160)
T PF11841_consen 34 LAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQ 112 (160)
T ss_pred HHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHH
Confidence 34445555555553 3222222221 3334444443333 466777899999999876544222211 223578889999
Q ss_pred CCChhHHhhhhHHHHHHHhhcCCC
Q 001249 934 DENQDVRQAAVYGLGVCAEFGGSV 957 (1114)
Q Consensus 934 ~~~~~vr~~a~~~lg~l~~~~~~~ 957 (1114)
..++.+..+|+.-+..+...+++.
T Consensus 113 ~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 113 VSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred cCCHHHHHHHHHHHHHHHhcCChH
Confidence 999999999999999998887753
No 369
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=47.62 E-value=25 Score=22.08 Aligned_cols=15 Identities=33% Similarity=0.299 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHH
Q 001249 391 WQKHHAALIALAQIA 405 (1114)
Q Consensus 391 ~~~r~aal~~l~~l~ 405 (1114)
|.+|+.+..+||.+.
T Consensus 1 ~~vR~~aa~aLg~~~ 15 (30)
T smart00567 1 PLVRHEAAFALGQLG 15 (30)
T ss_pred CHHHHHHHHHHHHcC
Confidence 778999999999873
No 370
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=47.48 E-value=1.4e+02 Score=29.20 Aligned_cols=79 Identities=20% Similarity=0.213 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001249 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1114)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~ 99 (1114)
+..+..+|.+..=.+....+.+.+.+..+..-+|.. -+++|.. -.++.+|++|...|++ ++++
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~----aL~LL~~~~~~~~Vr~yAV~~L~~------------~~d~ 106 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPED----ALELLSPKFPDPFVRAYAVERLES------------ASDE 106 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHH----HHHHhCccCCCHHHHHHHHHHHHh------------CCHH
Confidence 444555554433345555667777677665433332 3444543 3467888888877765 4566
Q ss_pred HHHHHHHHHHHHHhhc
Q 001249 100 TQSSLKSMLLQSIQLE 115 (1114)
Q Consensus 100 ~~~~i~~~ll~~l~~e 115 (1114)
.......+|.|+|.-|
T Consensus 107 ~l~~yLpQLVQaLr~E 122 (184)
T smart00145 107 ELLLYLLQLVQALKYE 122 (184)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 6666667777777765
No 371
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=47.41 E-value=5.8e+02 Score=30.71 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=48.5
Q ss_pred HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhh
Q 001249 226 QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEAR 305 (1114)
Q Consensus 226 ~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~ 305 (1114)
..++-.++++|.....++-+.++..++..+..+....|+.=...+ ..+++-+++ .+..+...|-..|..+..
T Consensus 299 K~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL----~~lVNKlGD--pqnKiaskAsylL~~L~~-- 370 (988)
T KOG2038|consen 299 KILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLL----VLLVNKLGD--PQNKIASKASYLLEGLLA-- 370 (988)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHH----HHHHHhcCC--cchhhhhhHHHHHHHHHh--
Confidence 345556777777766666778888888888888877776444333 333344443 345566666666666655
Q ss_pred hccchh
Q 001249 306 ERAPGM 311 (1114)
Q Consensus 306 ~~~~~~ 311 (1114)
..|.|
T Consensus 371 -~HPnM 375 (988)
T KOG2038|consen 371 -KHPNM 375 (988)
T ss_pred -hCCcc
Confidence 46655
No 372
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=47.38 E-value=3.4e+02 Score=27.97 Aligned_cols=123 Identities=18% Similarity=0.248 Sum_probs=71.6
Q ss_pred CCCCChhHHHHHHHHHHHhHhhhchhH-----Hhh---hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc---
Q 001249 427 FRDPHPRVRWAAINAIGQLSTDLGPDL-----QNQ---FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE--- 495 (1114)
Q Consensus 427 l~d~~~~vr~~a~~~l~~l~~~~~~~~-----~~~---~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~--- 495 (1114)
++|+++.|...+..|.+.+....-..+ ... .+..+=..+++.+.+ .++.||..|..++..++-...+.
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~-~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDS-ENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGS-SSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 678888888888777766544321111 011 123344456667777 78999999999998876432110
Q ss_pred --------------cc---cCc---------hHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhhhhhhhhhHhhhhH
Q 001249 496 --------------IL---TPY---------LDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYDAVMP 547 (1114)
Q Consensus 496 --------------~l---~~~---------l~~il~~L~~~l~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~ 547 (1114)
.+ .|+ -..++..|+..+.++. ..+-...+.+++.++..=+. |++.+++
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~----~~~~Il~ 156 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQ----FMSRILP 156 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGG----GHHHHHH
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhH----HHHHHHH
Confidence 01 122 2256778888877665 44445555566666554322 6777888
Q ss_pred HHHHHHh
Q 001249 548 FLKAILV 554 (1114)
Q Consensus 548 ~L~~~l~ 554 (1114)
.|...-.
T Consensus 157 ~ll~~~~ 163 (239)
T PF11935_consen 157 ALLSFNP 163 (239)
T ss_dssp HHHHHHH
T ss_pred HHHhcCc
Confidence 8777543
No 373
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=47.26 E-value=15 Score=22.50 Aligned_cols=14 Identities=50% Similarity=0.679 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhHh
Q 001249 434 VRWAAINAIGQLST 447 (1114)
Q Consensus 434 vr~~a~~~l~~l~~ 447 (1114)
||..|.++||++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999998764
No 374
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=46.28 E-value=95 Score=31.16 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=45.7
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhc
Q 001249 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 450 (1114)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1114)
+.+.+.++..|++.-.|.+|+.+.-...+. ...+.+...+...+.|++..|+.+..|+|..++..-+
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~ 182 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKEK------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNP 182 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCH
Confidence 356677778887744455554432222221 2345667778889999999999999999999987643
No 375
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=45.74 E-value=1.8e+02 Score=28.76 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChh--HHHHHHHHHHHhhhcCC
Q 001249 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR--VQAHAASAVLNFSENCT 493 (1114)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~--v~~~a~~al~~l~~~~~ 493 (1114)
+..++..+++...+.-.+||..|..++..+.....+.+ ++.+ -.+.+.+.+.. ++.. .-..+...+..++.-+.
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~--~~ip-~~~~L~~i~~~-~~~~~~~w~~~~~~F~~l~~LL~ 80 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTI--PHIP-HREELQDIFPS-ESEASLNWSSSSEYFPRLVKLLD 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--cCCC-cHHHHHHHccc-ccccccccCCHHHHHHHHHHHhc
Confidence 44555555555556667899999999999884332211 2222 22344444433 1110 01112223333333332
Q ss_pred cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001249 494 PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1114)
Q Consensus 494 ~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~ 532 (1114)
+..|...++..+.......+..+...+..++-..+.
T Consensus 81 ---~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 81 ---LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLR 116 (193)
T ss_pred ---cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHH
Confidence 235777777777777776666666666666666554
No 376
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.15 E-value=2.5e+02 Score=32.03 Aligned_cols=88 Identities=9% Similarity=0.159 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhh-hhhhhHHHHHhhccCC-CChhHHHHHHHHHHHhhhcCCc
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ-FHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTP 494 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~ 494 (1114)
+..+..|.+.+++.++.|..-|+..|..+++.|+..|... .-..+++..+...... ....||..++..|...-+.++.
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 3677888889999999999999999999999999877322 2456777788888774 4668999999999998887764
Q ss_pred ccccCchHHHHH
Q 001249 495 EILTPYLDGIVS 506 (1114)
Q Consensus 495 ~~l~~~l~~il~ 506 (1114)
. ..|++....
T Consensus 117 ~--~~~~~~~~~ 126 (470)
T KOG1087|consen 117 P--DGYLPDYYQ 126 (470)
T ss_pred C--CCcchhHHH
Confidence 1 355555443
No 377
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=44.88 E-value=3.9e+02 Score=27.96 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCCh
Q 001249 120 ISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNP 199 (1114)
Q Consensus 120 vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 199 (1114)
.....|..++.++.. ...+++-..+....+..-....+-.-.+...+.+.+. ..+-.+++..+...|.+. ..
T Consensus 131 ~~~~~A~~La~~a~~----~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~---P~~~~~~l~~Ll~lL~n~-~~ 202 (262)
T PF14225_consen 131 ECIEIAEALAQVAEA----QGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF---PDHEFQILTFLLGLLENG-PP 202 (262)
T ss_pred HHHHHHHHHHHHHHh----CCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhCC-cH
Confidence 344567888888753 3456655555555544332222223333444444332 235567777888888886 78
Q ss_pred HHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001249 200 DVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1114)
Q Consensus 200 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~ 260 (1114)
-+|...++.+..++...+-. ....+.++..+.+.++.+. ...|++++..+..
T Consensus 203 w~~~~~L~iL~~ll~~~d~~------~~~~~dlispllrlL~t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 203 WLRRKTLQILKVLLPHVDMR------SPHGADLISPLLRLLQTDL---WMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHHHHHhccccCC------CCcchHHHHHHHHHhCCcc---HHHHHHHHHHHHh
Confidence 99999999999999986422 1245567777777776543 3455555555444
No 378
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.75 E-value=2.2e+02 Score=32.43 Aligned_cols=94 Identities=21% Similarity=0.127 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHH
Q 001249 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1114)
Q Consensus 501 l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1114)
-...+..|.+-+++.++.++-.|+..|..++..+|..|.-.+ ..+++-+........ ....+|.+++..|-....+
T Consensus 36 ~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~--~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 36 PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKP--RDLKVREKILELIDTWQQA 113 (470)
T ss_pred cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCC--cchhHHHHHHHHHHHHHHH
Confidence 347788888889988889999999999999999998775322 345555555443321 4567899999999999988
Q ss_pred hch-hhhhhhHHHHHHHHH
Q 001249 579 VGK-DKFRDDAKQVMEVLM 596 (1114)
Q Consensus 579 ~~~-~~f~~~~~~i~~~l~ 596 (1114)
++. ....|....+...+.
T Consensus 114 f~~~~~~~~~~~~~y~~l~ 132 (470)
T KOG1087|consen 114 FCGPDGYLPDYYQIYDELR 132 (470)
T ss_pred ccCCCCcchhHHHHHHHHH
Confidence 874 444555555555443
No 379
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=43.56 E-value=1.7e+02 Score=25.85 Aligned_cols=84 Identities=8% Similarity=0.065 Sum_probs=49.4
Q ss_pred CChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHH
Q 001249 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLL 509 (1114)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~ 509 (1114)
..+.|...+.|++... .+...++..+.+.+.. ..+.-+..+...+..++.+++...-..+...+.+.+.
T Consensus 17 S~~~I~~lt~~a~~~~----------~~a~~iv~~i~~~i~~-~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 17 SQPSIQTLTKLAIENR----------KHAKEIVEIIEKHIKK-CPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred cHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 4455555555555332 4566788888888777 5667778899999999988764321112222244444
Q ss_pred HHhhcCChhHHHHHH
Q 001249 510 VLLQNGKQMVQEGAL 524 (1114)
Q Consensus 510 ~~l~~~~~~v~~~al 524 (1114)
......++.+|....
T Consensus 86 ~~~~~~~~~~r~kl~ 100 (114)
T cd03562 86 DAYEKVDEKTRKKLE 100 (114)
T ss_pred HHHHhCCHHHHHHHH
Confidence 444455555554433
No 380
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=42.94 E-value=1e+02 Score=28.39 Aligned_cols=75 Identities=12% Similarity=0.198 Sum_probs=50.6
Q ss_pred HHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc--ccCc
Q 001249 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI--LTPY 500 (1114)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~--l~~~ 500 (1114)
+++.|+-....++.+|..+|.. ....+.+++.+++.+++ ++-..|......+..+++.+.... -.+|
T Consensus 13 ~L~~L~aS~qSi~kaa~fAlk~----------~~~~edL~~cIle~le~-~~lN~R~nI~~fID~l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 13 LLRRLNASQQSIQKAAQFALKN----------RDMEEDLWSCILEQLEK-ENLNTRINIFYFIDSLCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHcchhHHHHHHHHHHHHHc----------cccHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHhcccccchh
Confidence 3445555566677787777743 13356788888889988 678889999999999988764332 3456
Q ss_pred hHHHHHHH
Q 001249 501 LDGIVSKL 508 (1114)
Q Consensus 501 l~~il~~L 508 (1114)
...+-..|
T Consensus 82 v~~l~~dL 89 (139)
T PF12243_consen 82 VSMLQRDL 89 (139)
T ss_pred HHHHHHHH
Confidence 55543333
No 381
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=41.79 E-value=2.1e+02 Score=27.50 Aligned_cols=81 Identities=20% Similarity=0.165 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
.+..+..+|...-+-+.+...++.+.|+.+..-+|.. -+++|.. -.++.+|++|...|++ +++
T Consensus 37 ~p~aLp~~L~s~~~w~~~~~~e~~~LL~~W~p~~p~~----ALeLL~~~f~d~~VR~yAV~~L~~------------~~d 100 (169)
T cd00869 37 EPNALPLVLASAPSWDWANLMDVYQLLHQWAPLRPLI----ALELLLPKFPDQEVRAHAVQWLAR------------LSN 100 (169)
T ss_pred CcHHHHHHHHhcccCcHHHHHHHHHHHhCCCCCCHHH----HHHHcCCcCCChHHHHHHHHHHHh------------CCH
Confidence 4556666666543334444555666666665434433 2344443 3456788888888876 345
Q ss_pred HHHHHHHHHHHHHHhhch
Q 001249 99 HTQSSLKSMLLQSIQLES 116 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~ 116 (1114)
+.......+|.|+|+-|+
T Consensus 101 deL~~yLpQLVQaLkyE~ 118 (169)
T cd00869 101 DELLDYLPQLVQALKFEL 118 (169)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 666666677777777653
No 382
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=41.01 E-value=2.7e+02 Score=25.07 Aligned_cols=89 Identities=19% Similarity=0.208 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHcCCCcchHHHHHHHHHhh---CCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhc--CC--C
Q 001249 357 VGQECLDRLAIALGGNTIVPVASEQLPAYL---AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS--FR--D 429 (1114)
Q Consensus 357 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~--l~--d 429 (1114)
.....+..++..--...-...++..+...+ ...+|++..-|+..|..+....++.+...+..-...|... ++ |
T Consensus 19 p~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d 98 (125)
T PF01417_consen 19 PPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVD 98 (125)
T ss_dssp --HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BB
T ss_pred cCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccC
Confidence 344566666655432355667788887777 5678999999999999999877765555544333322221 11 2
Q ss_pred C-----ChhHHHHHHHHHHHh
Q 001249 430 P-----HPRVRWAAINAIGQL 445 (1114)
Q Consensus 430 ~-----~~~vr~~a~~~l~~l 445 (1114)
+ ...||..|-..+.-+
T Consensus 99 ~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 99 PKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp TTSTBHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHh
Confidence 2 124777776665443
No 383
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=40.35 E-value=7e+02 Score=29.64 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=81.4
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhcCC-cchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH
Q 001249 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTS-SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1114)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 265 (1114)
..+...|.+. +...|-..+.++++++..+.. +...+.+.+-+..++..+.+-+.+..|-.|..++..+..+.......
T Consensus 302 ~~~~~LLdse-s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 302 EHFDELLDSE-SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHhccc-chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 3455667776 889999999999999987643 22445566677778888888888999999999999998888755433
Q ss_pred HHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHH
Q 001249 266 LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1114)
Q Consensus 266 ~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1114)
-+. -..+.......+. |-..-||..|+..+..+.-
T Consensus 381 ~~~-r~ev~~lv~r~lq--Drss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 381 VGR-RHEVIRLVGRRLQ--DRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cch-HHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHh
Confidence 322 2344444444443 3456799999999888766
No 384
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=39.50 E-value=3.2e+02 Score=25.93 Aligned_cols=117 Identities=19% Similarity=0.178 Sum_probs=58.9
Q ss_pred HHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCC---CCchhhHHHHHHhh
Q 001249 76 MAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE---NGWPELLPFMFQCV 152 (1114)
Q Consensus 76 ~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~---~~w~~ll~~l~~~~ 152 (1114)
++..+|.+.++.+ +..+.+|.+.+++.+....+..+ ....++++.+++.. |. +.|..+ ..++..+
T Consensus 37 LG~~IL~~~fk~h---------~~~r~~Ile~l~~rI~~~s~~~~-~~~idlL~~lv~~~-p~~vle~~~~l-~~~ld~l 104 (158)
T PF14676_consen 37 LGIQILLELFKVH---------EMIRSEILEQLLNRIVTKSSSPS-SQYIDLLSELVRKA-PLTVLECSSKL-KELLDYL 104 (158)
T ss_dssp HHHHHHHHHHHH----------GGGHHHHHHHHHHHHHH--SS---HHHHHHHHHHHHH--HHHHS-S-HHH-HGGGGGT
T ss_pred HHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHC-hHHHHHHHHHH-HHHHHHH
Confidence 8888888888765 55667777777777765333322 34567777777642 10 122221 1222222
Q ss_pred cCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001249 153 SSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAV 209 (1114)
Q Consensus 153 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 209 (1114)
..-..+. |...+..+..-+.-. ....+.++-.+-+.|-+. +...|..|+..+
T Consensus 105 ~~lp~~~---a~~ll~Al~PLi~~s-~~lrd~lilvLRKamf~r-~~~~R~~Av~Gf 156 (158)
T PF14676_consen 105 SFLPGDV---AIGLLRALLPLIKFS-PSLRDSLILVLRKAMFSR-ELDARQMAVNGF 156 (158)
T ss_dssp TTS-HHH---HHHHHHHHHHHHTT--HHHHHHHHHHHHHHTT-S-SHHHHHHHHHHH
T ss_pred HhCCHHH---HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHccc-cHHHHHHHHHHh
Confidence 2222222 333333333221111 113456677777888775 788888887665
No 385
>PF14961 BROMI: Broad-minded protein
Probab=38.43 E-value=2.2e+02 Score=36.13 Aligned_cols=73 Identities=7% Similarity=0.137 Sum_probs=56.7
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHhcccC-CCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhh
Q 001249 106 SMLLQSIQLESAKSISKKLCDTVSELASNILP-ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1114)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~-~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1114)
+.+++.+......+||..+.+.+..+--.+.. ...|+.+-..|...+.++|+...+.++......+...+-.+
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 56777777667888999988877655433332 35899999999999999999999999988888877665443
No 386
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=37.88 E-value=7.5e+02 Score=29.28 Aligned_cols=321 Identities=13% Similarity=0.170 Sum_probs=151.3
Q ss_pred HHHHHHHHHhhc-hhhhHHHHHHHHHHHHHhc-------ccCCCCchhhHHHHH----HhhcCCChhhHHHHHHHHHHhh
Q 001249 104 LKSMLLQSIQLE-SAKSISKKLCDTVSELASN-------ILPENGWPELLPFMF----QCVSSDSVKLQESAFLIFAQLS 171 (1114)
Q Consensus 104 i~~~ll~~l~~e-~~~~vr~~~~~~i~~ia~~-------~~~~~~w~~ll~~l~----~~~~~~~~~~r~~al~~l~~l~ 171 (1114)
+.+.+-+..... .+..++++.|+++..|..- +.....|.+.+..+. +++.. +.....++-....+.
T Consensus 130 Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K--~khw~~afPL~t~lL 207 (552)
T PF14222_consen 130 FMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSK--PKHWNVAFPLVTTLL 207 (552)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHHH
Confidence 334444455543 3555999999888877431 111137877665554 44333 334444666555544
Q ss_pred hhhh-hhhhhhHH-HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhc---CCcchHhHHHhhHHHHHHHHHHHHh----C
Q 001249 172 QYIG-DTLTPHLK-HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL---TSSADRDRFQDLLPLMMRTLTESLN----N 242 (1114)
Q Consensus 172 ~~~~-~~~~~~~~-~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~---~~~~~~~~~~~l~p~ll~~l~~~~~----~ 242 (1114)
-..+ +.|..++. .++..+..-+++. ..|..++.++..++=.+ ...+....-..-+..+++.++..-. .
T Consensus 208 CvS~~e~F~~~W~~~~i~~~~~klKdk---~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~ 284 (552)
T PF14222_consen 208 CVSPKEFFLSNWLPSLIESLISKLKDK---ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIP 284 (552)
T ss_pred hcCcHHHHHHHHHHHHHHHHHhhcCCh---hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccC
Confidence 3333 34555566 4666666656653 78999999998876432 1122223333445556665553211 1
Q ss_pred CCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhcc----CCcchhHHHHHHHHHHHHHHhh---hccchhh---
Q 001249 243 GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA----ESLEEGTRHLAIEFVITLAEAR---ERAPGMM--- 312 (1114)
Q Consensus 243 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~----~~~~~~vr~~a~~~l~~l~~~~---~~~~~~~--- 312 (1114)
.|.......++++.-++..++++- +.+++--+++.-.. ...+.+--..++..+..+.... +..|.+.
T Consensus 285 ~D~~~~~~lv~ii~~I~~~~~df~---~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~ 361 (552)
T PF14222_consen 285 RDPEPLNPLVQIIRFIGYKHLDFA---FRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTS 361 (552)
T ss_pred CChhhhhhHHHHHHhHhhhCcchH---HHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcC
Confidence 133444445555555555554443 12222222222111 1122332334555554444431 1110000
Q ss_pred -------------------------hcchhhHHHHHHHHHHhhc--C-----C-CCCcccccCC----------CCCcc-
Q 001249 313 -------------------------RKLPQFINRLFAILMSMLL--D-----I-EDDPLWHSAE----------TEDED- 348 (1114)
Q Consensus 313 -------------------------~~~~~~~~~l~~~l~~~l~--~-----~-~~~~~~~~~~----------~~~ed- 348 (1114)
.....+.+++-..+-+.+. + . -.++.|.... ...+|
T Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~ 441 (552)
T PF14222_consen 362 DPSGNTLRVKYTPSNEYLSNEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDM 441 (552)
T ss_pred CCCCcccccccCcccccccchhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCcccccccccccc
Confidence 0011233333222222111 0 0 0111122100 00011
Q ss_pred -ccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcC
Q 001249 349 -AGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF 427 (1114)
Q Consensus 349 -~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 427 (1114)
.++......-..++..+-..++..--...+++.+....-+.+..+|.+|..+|..++...+ .-...+..+..++++ +
T Consensus 442 ~~~~~~~~~Lf~t~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p-~~~~vi~~Fa~Fif~-~ 519 (552)
T PF14222_consen 442 VTDQKPQLDLFRTCIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP-NRQQVITGFARFIFR-F 519 (552)
T ss_pred cccccchhHHHHHHHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHee-C
Confidence 0011111222334444444444333456677888888889999999999999999998764 222344455555555 5
Q ss_pred CCCChhH
Q 001249 428 RDPHPRV 434 (1114)
Q Consensus 428 ~d~~~~v 434 (1114)
.|..+..
T Consensus 520 ~d~~~~~ 526 (552)
T PF14222_consen 520 DDKYPSM 526 (552)
T ss_pred cccCccc
Confidence 5554443
No 387
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.97 E-value=6.5e+02 Score=28.31 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=42.4
Q ss_pred CCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH---HHHHHHHHhcCCCCChhHHHHHHHHHHHhHh
Q 001249 371 GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL---EQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1114)
Q Consensus 371 ~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l---~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1114)
+..+++.+++++...-.+.+.-+ -.++.+.++... +.-..++ ...-..++..+.|.|..||..|-.+|--+++
T Consensus 588 ~a~~i~tlieLL~a~QeDDEfV~--QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae 663 (791)
T KOG1222|consen 588 PAKLIDTLIELLQACQEDDEFVV--QIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAE 663 (791)
T ss_pred ccccHHHHHHHHHhhcccchHHH--HHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 34567777776654433333322 223333343332 1111111 1233467788999999999999999888776
Q ss_pred hh
Q 001249 448 DL 449 (1114)
Q Consensus 448 ~~ 449 (1114)
+-
T Consensus 664 ~d 665 (791)
T KOG1222|consen 664 HD 665 (791)
T ss_pred hh
Confidence 53
No 388
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=36.34 E-value=6.2e+02 Score=27.83 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001249 477 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1114)
Q Consensus 477 v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1114)
-+.-|...+.++...++. .-+.-+..-+.+..+.+..+|.+|+.-+..+|..
T Consensus 40 ~k~lasq~ip~~fk~fp~-----la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKHFPS-----LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHhhCch-----hhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 344566667777666542 1233445555666777788888888777777653
No 389
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=35.92 E-value=5.3e+02 Score=26.89 Aligned_cols=78 Identities=13% Similarity=0.033 Sum_probs=43.8
Q ss_pred HHHHHHH-HHHHHHHhHhhhhhhhhhHhHHHHHHHhccCCCh--------hHHhhhhHHHHHHHhhcC--CCchHHHHHH
Q 001249 897 EERRIAI-CIFDDVAEQCREAALKYYETYLPFLLEACNDENQ--------DVRQAAVYGLGVCAEFGG--SVVKPLVGEA 965 (1114)
Q Consensus 897 ~~r~~a~-~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~--------~vr~~a~~~lg~l~~~~~--~~~~~~~~~~ 965 (1114)
..|+.++ .++..++..-+....+.++..+..+++..+.+.. .-+-+|..+|..+..... +...+|+.+.
T Consensus 162 TRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~ 241 (255)
T PF10350_consen 162 TRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDA 241 (255)
T ss_pred ccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3455444 3444444443332225566667777766655332 456677777777777654 4566777766
Q ss_pred HHHHHHhhc
Q 001249 966 LSRLNVVIR 974 (1114)
Q Consensus 966 l~~L~~~l~ 974 (1114)
+..-.+.+.
T Consensus 242 l~lai~~f~ 250 (255)
T PF10350_consen 242 LILAIKGFS 250 (255)
T ss_pred HHHHHHhCC
Confidence 655554444
No 390
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=35.87 E-value=85 Score=30.71 Aligned_cols=80 Identities=24% Similarity=0.216 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
+++.+..+|..+--.+.+..+++.+.|..+..-+|.. -+++|.. -.++.+|++|...|++ +++
T Consensus 43 ~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~----AL~LL~~~f~~~~VR~yAv~~L~~------------~~d 106 (184)
T PF00613_consen 43 NPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPED----ALELLSPNFPDPFVRQYAVRRLES------------LSD 106 (184)
T ss_dssp SGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHH----HHHCTSTT---HHHHHHHHHHHCT------------S-H
T ss_pred CchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHH----HHHHHHhhccHHHHHHHHHHHHHH------------cCc
Confidence 3455555566544455555666666666665533322 3444443 2347778777777754 345
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001249 99 HTQSSLKSMLLQSIQLE 115 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e 115 (1114)
+....+..+|.++|.-|
T Consensus 107 ~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 107 EELLFYLPQLVQALRYE 123 (184)
T ss_dssp HHHHHHHHHHHHHGGGS
T ss_pred hHHHHHHHHHHHHheec
Confidence 66666667777777765
No 391
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=35.75 E-value=4.4e+02 Score=25.99 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCC-CCchhhHHHHHHhhcCCC-----hhhHHHHHHHHHHhhh
Q 001249 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-NGWPELLPFMFQCVSSDS-----VKLQESAFLIFAQLSQ 172 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~-~~w~~ll~~l~~~~~~~~-----~~~r~~al~~l~~l~~ 172 (1114)
+....+-..+++... |.-..||..++.++..+.....+. ...| -.+.+...+..+. +..-...+..+..+..
T Consensus 3 ~~~~~~~~~llrqa~-EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~ 80 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAA-EKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD 80 (193)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc
Confidence 334444455555555 578889999999999998543331 1222 3455555544332 2211222222222221
Q ss_pred hhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 001249 173 YIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEAL 252 (1114)
Q Consensus 173 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~ 252 (1114)
+..+...++.-+....... +..+...+..+|..++...+. .......++..++..+.... .+..+....+
T Consensus 81 -----~~~y~~~ll~Glv~S~G~~-tesl~~~s~~AL~~~~~~~~~--~~~~~~~v~~~l~~il~~~~--~~dRv~vP~l 150 (193)
T PF12612_consen 81 -----LPEYRYSLLSGLVVSAGGL-TESLVRASSAALLSYLRELSD--SPEELEQVLSDLLSILKENL--RNDRVVVPLL 150 (193)
T ss_pred -----cHHHHHHHHhHHHhcCCCC-chhHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHhC--CCCCeeecHH
Confidence 1124444555555555554 667777777777777754311 22333444444444444322 2333334445
Q ss_pred HHHHHHHc
Q 001249 253 ELLIELAG 260 (1114)
Q Consensus 253 ~~l~~l~~ 260 (1114)
+.+..+.+
T Consensus 151 ~tl~~Ll~ 158 (193)
T PF12612_consen 151 KTLDFLLS 158 (193)
T ss_pred HHHHHHHh
Confidence 55544443
No 392
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=35.66 E-value=9.5e+02 Score=29.79 Aligned_cols=164 Identities=16% Similarity=0.089 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhhc----hhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhh----h
Q 001249 103 SLKSMLLQSIQLE----SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY----I 174 (1114)
Q Consensus 103 ~i~~~ll~~l~~e----~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~----~ 174 (1114)
.+.-.+.+.|.+. .++.+|...-.++..+...... ..+.+++|-+...+-++++..|.-|-..+..+... .
T Consensus 77 ~~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~-~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t 155 (727)
T PF12726_consen 77 ALLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPL-KLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSIT 155 (727)
T ss_pred hHHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCc-cccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCc
Confidence 4555667776652 2444666655666655442111 12378899999999999999999999999998653 2
Q ss_pred hhhhhh-hHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhcCCcchHhHHHh--hHHHHHHHHHHHHhCCCHHHHHH
Q 001249 175 GDTLTP-HLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQD--LLPLMMRTLTESLNNGNEATAQE 250 (1114)
Q Consensus 175 ~~~~~~-~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--l~p~ll~~l~~~~~~~~~~~~~~ 250 (1114)
.+.+.. ..+.+...+... +.. .++..-..-=..+..++..++...-...+.. +-| +...+...+..........
T Consensus 156 ~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~-i~~L~~~hL~~~~~~~l~~ 233 (727)
T PF12726_consen 156 DEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDP-IYRLLLNHLSSNLSPPLPI 233 (727)
T ss_pred hhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccch-HHHHHHHHhhcccchhHHH
Confidence 333432 233344444333 221 1222111122344444555432111122222 334 6666776676654566677
Q ss_pred HHHHHHHHHccchHHHHHH
Q 001249 251 ALELLIELAGTEPRFLRRQ 269 (1114)
Q Consensus 251 ~~~~l~~l~~~~~~~~~~~ 269 (1114)
.+++|..+.+..+..|..+
T Consensus 234 lL~~l~~lL~k~~~~FW~~ 252 (727)
T PF12726_consen 234 LLRCLSILLEKLGSDFWDA 252 (727)
T ss_pred HHHHHHHHHHhCHHHHhcc
Confidence 8889999999888877653
No 393
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=35.13 E-value=6.8e+02 Score=27.96 Aligned_cols=141 Identities=15% Similarity=0.109 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHcCCChHH--HHHHHHHHHHhhh-cCchHHH----HHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcc
Q 001249 21 SAPFETLISHLMSTSNEQ--RSEAELLFNLCKQ-QDPDSLT----LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLW 93 (1114)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~--r~~Ae~~L~~~~~-~~p~~~~----~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w 93 (1114)
...+..+|+-+++|+.+. |-+|-..|++... .|-+... ..++.+......++..+..+-+|.++++..
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS----- 253 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHS----- 253 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhh-----
Confidence 346777788889998765 8888888887543 1333321 122333333666777777777888877653
Q ss_pred cCCCHHHHH-HHH----HHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCc----hhhHHHHHHhhcCCChhhHHHHH
Q 001249 94 PRLSLHTQS-SLK----SMLLQSIQLESAKSISKKLCDTVSELASNILPENGW----PELLPFMFQCVSSDSVKLQESAF 164 (1114)
Q Consensus 94 ~~l~~~~~~-~i~----~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w----~~ll~~l~~~~~~~~~~~r~~al 164 (1114)
++.-. .+. ..++-.... .++.+-+..+-+++.++-+-....+- ...-..|+-+..+.+.-.|-.|.
T Consensus 254 ----eet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 254 ----EETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred ----HHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 22211 111 112222233 45666666777777777653221100 11122233333444555555555
Q ss_pred HHHHHhh
Q 001249 165 LIFAQLS 171 (1114)
Q Consensus 165 ~~l~~l~ 171 (1114)
.+...++
T Consensus 329 lAV~vla 335 (832)
T KOG3678|consen 329 LAVAVLA 335 (832)
T ss_pred HHHhhhh
Confidence 4444443
No 394
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=32.98 E-value=90 Score=22.27 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHh
Q 001249 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~ 133 (1114)
...+++|+.+++.|.. .++..|..+..+|+.+.+
T Consensus 3 ~~~eYLKNvl~~fl~~-~~~~~~~~llpvi~tlL~ 36 (46)
T PF01465_consen 3 INLEYLKNVLLQFLES-REPSEREQLLPVIATLLK 36 (46)
T ss_dssp HHHHHHHHHHHHHHTT-SS---HHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHC
Confidence 3568899999999997 457888888888888765
No 395
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=32.82 E-value=1.3e+02 Score=28.77 Aligned_cols=55 Identities=22% Similarity=0.418 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcccCCCCc-----hhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhh
Q 001249 124 LCDTVSELASNILPENGW-----PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1114)
Q Consensus 124 ~~~~i~~ia~~~~~~~~w-----~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 179 (1114)
+++++..+....-+ +.| .+++|.+..+++|..+.....|+..+..+...+++.+.
T Consensus 46 lvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~ 105 (164)
T PF13925_consen 46 LVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIR 105 (164)
T ss_pred HHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677766632222 456 68999999999999999999999999999988777644
No 396
>PF14961 BROMI: Broad-minded protein
Probab=32.24 E-value=4.6e+02 Score=33.56 Aligned_cols=131 Identities=11% Similarity=0.165 Sum_probs=78.1
Q ss_pred HHHHhcCCCCC-hhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccC
Q 001249 421 SMVLNSFRDPH-PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (1114)
Q Consensus 421 ~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~ 499 (1114)
..+...+.-.+ ..||.+|+..|..+. .++-...++++.+-..|...|.| +++.+...+.....++....+......
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p--~SDVls~E~W~~L~~~L~~~LsD-pD~~is~~~L~f~Ak~fssSpl~~trE 240 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAP--PSDVLSCESWSVLRENLTDALSD-PDPEISDASLRFHAKMFSSSPLNMTRE 240 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCC--hhhccccccHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCCchhhhHH
Confidence 44444555444 469999998886643 22223356788999999999999 999999999888888777655433222
Q ss_pred chHHHHHHHHHHhhcC--------------ChhHHHHHHHHHHHHHHh---hhh----hhhhhHhhhhHHHHHHHhh
Q 001249 500 YLDGIVSKLLVLLQNG--------------KQMVQEGALTALASVADS---SQE----HFQKYYDAVMPFLKAILVN 555 (1114)
Q Consensus 500 ~l~~il~~L~~~l~~~--------------~~~v~~~al~~l~~l~~~---~~~----~~~~~~~~i~~~L~~~l~~ 555 (1114)
.+..++..+...+.+. ++.+ ...+..+.-+.+. ++. .-.+|++.+++--+.++..
T Consensus 241 iYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~-~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs~ 316 (1296)
T PF14961_consen 241 IYTSLANHLESYFLSQKNSLPTLSSGIDITFPDI-ERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLST 316 (1296)
T ss_pred HHHHHHHHHHHHHHhccccCccccccccccCccH-HHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhcc
Confidence 3445555554433211 1111 2233333333332 222 2346777777777777654
No 397
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=31.47 E-value=3.1e+02 Score=25.47 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001249 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (1114)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 212 (1114)
.+.+...+...|.++ +++|+..|++|+..+
T Consensus 15 ~~~l~~~~~~LL~~~-d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 15 SDELYDALLRLLSSR-DPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 456667788888987 999999999999875
No 398
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=31.20 E-value=2e+02 Score=25.74 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=37.8
Q ss_pred HhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001249 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1114)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1114)
+..|......++..+.|++... .+...++..+.+.+.. ..+.-+......+..++.++.
T Consensus 6 L~~L~~s~~~I~~lt~~~~~~~----------~~a~~Iv~~i~~~~~~-~~~~~kL~~LYlindIl~n~~ 64 (121)
T smart00582 6 LESLNNSQESIQTLTKWAIEHA----------SHAKEIVELWEKYIKK-APPPRKLPLLYLLDSIVQNSK 64 (121)
T ss_pred HHhccccHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-CCccceehhHHhHHHHHHHHh
Confidence 3445566667777777777542 3345677777777666 444555677777777777664
No 399
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=30.65 E-value=9.7e+02 Score=28.39 Aligned_cols=314 Identities=12% Similarity=0.111 Sum_probs=145.5
Q ss_pred ChHHHHHHHHHHHHHHHhcCCcchH----hHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HccchHHHHHHHH-
Q 001249 198 NPDVKIAALNAVINFIQCLTSSADR----DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL-AGTEPRFLRRQLV- 271 (1114)
Q Consensus 198 ~~~vr~~a~~~l~~l~~~~~~~~~~----~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~~~~~- 271 (1114)
+.+++.+-++.+..++.-+...... ....+.+..+...+.+.... +.....++-+...+ +-..++.|..+..
T Consensus 144 ~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K--~khw~~afPL~t~lLCvS~~e~F~~~W~~ 221 (552)
T PF14222_consen 144 KSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSK--PKHWNVAFPLVTTLLCVSPKEFFLSNWLP 221 (552)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHHHhcCcHHHHHHHHHH
Confidence 5679999999998887554321111 12223333333333433332 34444455555543 3345677888777
Q ss_pred HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhh--ccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccc
Q 001249 272 DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE--RAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDA 349 (1114)
Q Consensus 272 ~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~ 349 (1114)
.+++.+..-+. +...|..+++++..++-.+- +.++-.......++.++..++.. ....|...|
T Consensus 222 ~~i~~~~~klK----dk~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~-----~kk~~i~~D------ 286 (552)
T PF14222_consen 222 SLIESLISKLK----DKETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPK-----GKKGWIPRD------ 286 (552)
T ss_pred HHHHHHHhhcC----ChhhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccC-----CCCcccCCC------
Confidence 68877765443 33678888888877765421 11110111122344555555421 111233221
Q ss_pred cCCCchhhHHHHHHHHHHHcCCCcc-hHHHHHHHHHhhC-----CCChhHHHHHHHHHHHHHhhcHHHHHH---------
Q 001249 350 GESSNYSVGQECLDRLAIALGGNTI-VPVASEQLPAYLA-----APEWQKHHAALIALAQIAEGCAKVMVK--------- 414 (1114)
Q Consensus 350 ~~~~~~~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~-----~~~~~~r~aal~~l~~l~~~~~~~~~~--------- 414 (1114)
......-.+.+..++.... +-. -..+++++..... +-+|..-..++.++-.+.......-.+
T Consensus 287 --~~~~~~lv~ii~~I~~~~~-df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~ 363 (552)
T PF14222_consen 287 --PEPLNPLVQIIRFIGYKHL-DFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSDP 363 (552)
T ss_pred --hhhhhhHHHHHHhHhhhCc-chHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCCC
Confidence 0112233344444554433 222 3445666554432 235777777888877776542210000
Q ss_pred ----------hHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh-hhH----------HHHHhhccCCC
Q 001249 415 ----------NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVL----------PALAGAMDDFQ 473 (1114)
Q Consensus 415 ----------~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~il----------~~l~~~l~~~~ 473 (1114)
.....++ .....++.....-...+.+++.+...+...+....+. .-. ...+..-.|..
T Consensus 364 ~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~~ 442 (552)
T PF14222_consen 364 SGNTLRVKYTPSNEYLS-NEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDMV 442 (552)
T ss_pred CCcccccccCccccccc-chhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCccccccccccccc
Confidence 0000011 0001111111112344555666655553322111000 000 00000001100
Q ss_pred ChhHHHHHHHHHHHhhhcCCcccccC--chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 474 NPRVQAHAASAVLNFSENCTPEILTP--YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 474 ~~~v~~~a~~al~~l~~~~~~~~l~~--~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
. -+......+...++..+ ..+.. -...+++.|....-+.++.+++.|..++..++...+
T Consensus 443 ~--~~~~~~~Lf~t~i~aiP-rcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 443 T--DQKPQLDLFRTCIQAIP-RCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred c--cccchhHHHHHHHHHcc-ccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC
Confidence 0 11222233344444332 22222 246778888888888899999999999999987653
No 400
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=30.40 E-value=4.4e+02 Score=24.35 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=54.5
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh---h
Q 001249 462 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH---F 538 (1114)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~---~ 538 (1114)
+..+++.|+. ....++.+|..||.. . ..-+.+++.++..+++++...|...+..+..++...... .
T Consensus 10 F~~~L~~L~a-S~qSi~kaa~fAlk~--~--------~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~ 78 (139)
T PF12243_consen 10 FTQLLRRLNA-SQQSIQKAAQFALKN--R--------DMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYN 78 (139)
T ss_pred HHHHHHHcch-hHHHHHHHHHHHHHc--c--------ccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhccccc
Confidence 4455667766 556777888888765 2 234566788888888888889999999999998876432 3
Q ss_pred hhhHhhhhHHHHHHH
Q 001249 539 QKYYDAVMPFLKAIL 553 (1114)
Q Consensus 539 ~~~~~~i~~~L~~~l 553 (1114)
.+|...+-..|..++
T Consensus 79 ~~Yv~~l~~dL~~Iv 93 (139)
T PF12243_consen 79 YPYVSMLQRDLPRIV 93 (139)
T ss_pred chhHHHHHHHHHHHH
Confidence 456554444444443
No 401
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=28.69 E-value=9.5e+02 Score=27.67 Aligned_cols=84 Identities=12% Similarity=0.100 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCC
Q 001249 899 RRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNA 978 (1114)
Q Consensus 899 r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~ 978 (1114)
....+++++...-.+|+.... +.++..+-..+.-.++.+|+..-.|+|-+.-..+.. .++..|.+.....
T Consensus 619 ~ie~~a~Lg~AliamGedig~--eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm------~vfDtL~r~shd~-- 688 (881)
T COG5110 619 LIESLALLGCALIAMGEDIGS--EMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM------NVFDTLERSSHDG-- 688 (881)
T ss_pred HHHHHHHhhhHHhhhcchhhH--HHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcch------HHHHHHHHhcccc--
Confidence 344567777777777776432 122233333344577888888888888886665542 2444454443332
Q ss_pred CChhhhhhHHHHHHHHHH
Q 001249 979 LQPENLMAYDNAVSALGK 996 (1114)
Q Consensus 979 ~~~~~~~~~~na~~al~~ 996 (1114)
+..+.-|++.++|-
T Consensus 689 ----dl~v~~ntIfamGL 702 (881)
T COG5110 689 ----DLNVIINTIFAMGL 702 (881)
T ss_pred ----chhHHHHHHHHhhc
Confidence 35566667777663
No 402
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=28.36 E-value=5.6e+02 Score=30.75 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhccCCccchhhhhHHHHHhcc
Q 001249 613 MLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ 644 (1114)
Q Consensus 613 ~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~ 644 (1114)
-...+-.+|+..++.+.|-+.+.+..+...++
T Consensus 374 y~slLiElCK~~P~~lpqV~aqa~r~lY~rld 405 (759)
T KOG1104|consen 374 YTSLLIELCKLQPKALPQVLAQAVRILYMRLD 405 (759)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHHHhc
Confidence 33456678888888888888888888877773
No 403
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=28.18 E-value=1.1e+03 Score=28.02 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=88.5
Q ss_pred chHHHHHHHHHhhC--CCChhHHHHHHHHHHHHHhhcH---HHHH----HhHHHHHHHHHhcCC----CCChhHHHHHHH
Q 001249 374 IVPVASEQLPAYLA--APEWQKHHAALIALAQIAEGCA---KVMV----KNLEQVLSMVLNSFR----DPHPRVRWAAIN 440 (1114)
Q Consensus 374 ~~~~l~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~---~~~~----~~l~~i~~~l~~~l~----d~~~~vr~~a~~ 440 (1114)
+......++..+.. +.+|..-.....+++.+...|. +.+. ..+-.++..+...++ ...+.++.....
T Consensus 381 i~~~~~~~~~~~~~~~~~s~g~l~~~~~~LsalL~~c~~~~~~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~~~ 460 (559)
T PF14868_consen 381 IFTLCFAFCQKWLSPSSCSLGELGQLNFALSALLQVCNSSGSTIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTLSL 460 (559)
T ss_pred HHHHHHHHHHHhcccCCcCcchHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHHHH
Confidence 34444445555544 2345555444455544433332 1111 122233344444442 223555555444
Q ss_pred HHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc-CchHHHHHHHHHHhhcCChhH
Q 001249 441 AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT-PYLDGIVSKLLVLLQNGKQMV 519 (1114)
Q Consensus 441 ~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~-~~l~~il~~L~~~l~~~~~~v 519 (1114)
.++-++.. ........+.+++..+-+.+...+...++-+++..++.+.+..-++... +..+.+..-...++.+.++-+
T Consensus 461 lL~l~~~~-~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll 539 (559)
T PF14868_consen 461 LLSLLSFF-IQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLL 539 (559)
T ss_pred HHHHHHHH-HHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHH
Confidence 44433322 2222234566777777777755355568888888888887654433233 445555555556788999999
Q ss_pred HHHHHHHHHHHHHhh
Q 001249 520 QEGALTALASVADSS 534 (1114)
Q Consensus 520 ~~~al~~l~~l~~~~ 534 (1114)
...|+.+++.+|...
T Consensus 540 ~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 540 HQHALEAFGQFAERT 554 (559)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999998754
No 404
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=27.58 E-value=4.8e+02 Score=23.87 Aligned_cols=99 Identities=10% Similarity=0.078 Sum_probs=55.0
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCch-----hhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhh
Q 001249 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWP-----ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (1114)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~-----~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 180 (1114)
+.|..-....++.+-+.++ ++.+|..-+..-.|. +.+..+...+..++....+-++-.+..+|-+-... .
T Consensus 19 q~LV~efq~tt~~eakeqv---~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~--~ 93 (173)
T KOG4646|consen 19 QHLVDEFQTTTNIEAKEQV---TANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA--K 93 (173)
T ss_pred HHHHHHHHHhccHHHHHHH---HHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH--H
Confidence 3344444433455555554 444444434435675 45667777777788888888877777776442111 1
Q ss_pred hHH--HHHHHHHHhhcCCCChHHHHHHHHHHH
Q 001249 181 HLK--HLHAVFLNCLTNSNNPDVKIAALNAVI 210 (1114)
Q Consensus 181 ~~~--~l~~~l~~~l~~~~~~~vr~~a~~~l~ 210 (1114)
++. .=+|.++.+++++ ...+-..|+-++.
T Consensus 94 ~I~ea~g~plii~~lssp-~e~tv~sa~~~l~ 124 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSP-PEITVHSAALFLQ 124 (173)
T ss_pred HHHHhcCCceEEeecCCC-hHHHHHHHHHHHH
Confidence 111 1245666777876 5555555555443
No 405
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=27.03 E-value=4.8e+02 Score=24.79 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=45.6
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC
Q 001249 164 FLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (1114)
Q Consensus 164 l~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~ 243 (1114)
.++|+.++...+-.+.++...+...+- .+..- +.++-..-++++.-++..- ..+-..++-++.+.+-+.
T Consensus 76 idlL~~lv~~~p~~vle~~~~l~~~ld-~l~~l-p~~~a~~ll~Al~PLi~~s---------~~lrd~lilvLRKamf~r 144 (158)
T PF14676_consen 76 IDLLSELVRKAPLTVLECSSKLKELLD-YLSFL-PGDVAIGLLRALLPLIKFS---------PSLRDSLILVLRKAMFSR 144 (158)
T ss_dssp HHHHHHHHHH-HHHHS-S-HHHHGGGG-GTTTS--HHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHH-HHHhC-CHHHHHHHHHHHHHHHhcC---------HHHHHHHHHHHHHHHccc
Confidence 577777777766655555555543332 23332 4555555555555555431 223346777788777777
Q ss_pred CHHHHHHHHHHHH
Q 001249 244 NEATAQEALELLI 256 (1114)
Q Consensus 244 ~~~~~~~~~~~l~ 256 (1114)
+.+.|..|+..|.
T Consensus 145 ~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 145 ELDARQMAVNGFL 157 (158)
T ss_dssp SHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhc
Confidence 8888888876653
No 406
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=26.51 E-value=8.1e+02 Score=26.13 Aligned_cols=72 Identities=13% Similarity=0.055 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCCCChh-HHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001249 418 QVLSMVLNSFRDPHPR-VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1114)
Q Consensus 418 ~i~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1114)
.++..+...++..+|. .-..||.-++++.+..+....--.--..=..++..++. ++++|+-.|..|+..++.
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh-~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINH-DDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcC-CCchhhHHHHHHHHHHHh
Confidence 5777778888777776 44567888888888765433100111333456677777 899999999999877654
No 407
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=26.03 E-value=1.4e+02 Score=25.70 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=26.8
Q ss_pred HHHHHHhcc--CCChhHHhhhhHHHHHHHhhcCC
Q 001249 925 LPFLLEACN--DENQDVRQAAVYGLGVCAEFGGS 956 (1114)
Q Consensus 925 ~~~ll~~l~--~~~~~vr~~a~~~lg~l~~~~~~ 956 (1114)
+|.+++++. +.+|.+|..|++|+..+++.+.+
T Consensus 30 i~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 30 IPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 677777764 46799999999999999998765
No 408
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=24.76 E-value=3.5e+02 Score=25.47 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhh
Q 001249 1056 IVSVFAEILCGKDLA-TEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSIL 1113 (1114)
Q Consensus 1056 i~~~~~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 1113 (1114)
....+..+|...+.. ..+++.+...++...-..+-..++.+++++|+.+++..|++|+
T Consensus 52 ~~~ALk~aL~npP~~~k~~~K~~~~~~Vl~vL~s~k~sdI~~~v~~L~~~~~D~LMKYi 110 (152)
T PF04699_consen 52 NEEALKAALENPPYGSKDAVKDRALQLVLEVLTSIKSSDIENAVKSLDSDQQDILMKYI 110 (152)
T ss_dssp HHHHHHHHTSS--TT-S-HHHHHHHHHHHHHHHCS-GGGHHHHHCCS-HHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcCCCcchHHHHHHHHHHHHHHccHHHHHHHHHhCCHHHHhHHHHHH
Confidence 445555566533321 1255555555544444455556699999999999999999875
No 409
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.58 E-value=3e+02 Score=22.81 Aligned_cols=36 Identities=8% Similarity=0.200 Sum_probs=21.8
Q ss_pred HhCCChHHHHHHHH---HHcCCC---hHHHHHHHHHHHHhhh
Q 001249 16 ILGPDSAPFETLIS---HLMSTS---NEQRSEAELLFNLCKQ 51 (1114)
Q Consensus 16 ~~~~~~~~l~~ll~---~~~s~d---~~~r~~Ae~~L~~~~~ 51 (1114)
.+.|+.+.|.+.++ .+.+.+ .++|+.|++....+.+
T Consensus 7 ~~~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~ 48 (93)
T COG1698 7 LMNDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN 48 (93)
T ss_pred chhhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhC
Confidence 34456665555544 433222 3689999988777765
No 410
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=24.58 E-value=1.7e+03 Score=29.13 Aligned_cols=54 Identities=15% Similarity=0.037 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCCChhHHhhhhHHHHHHHh
Q 001249 899 RRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAE 952 (1114)
Q Consensus 899 r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~ 952 (1114)
-+.|+-++.+++-.-......++|.++-..+-.+....+.|+..|-..|-.++.
T Consensus 933 ~qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~lDH~~~~V~e~a~~lL~~Li~ 986 (1120)
T PF14228_consen 933 GQLALIFLVDLAVEPDEDLREHLPLLLHVIFVLLDHYTPLVQEQARELLVNLIH 986 (1120)
T ss_pred HHHHHHHHHHHHcCCcchHhhhhHHHHHHHHHcccCCChHHHHHHHHHHHHHHH
Confidence 456777888877555555566788888777777776778888777666555544
No 411
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.25 E-value=1.1e+03 Score=27.09 Aligned_cols=34 Identities=21% Similarity=0.090 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001249 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1114)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1114)
..+..+.++.+.++++ +...+.+|+-.++.....
T Consensus 447 E~~palalLs~yl~s~-s~k~~~aaiLGlg~afsG 480 (881)
T COG5110 447 ERPPALALLSNYLQSS-SSKHVIAAILGLGAAFSG 480 (881)
T ss_pred ccchHHHHHHHhccCC-chHHHHHHHhhhHHhhcC
Confidence 3556777888899987 888888888777765543
No 412
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=23.97 E-value=1.3e+02 Score=24.04 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhhhhhh
Q 001249 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIG 175 (1114)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~ 175 (1114)
++.++.+..|..+..|..|+.+|+.|+....
T Consensus 41 i~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 41 IQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 7888889999999999999999999987643
No 413
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=22.68 E-value=1.3e+03 Score=29.04 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=25.8
Q ss_pred hhhhHHHHHHhHhhhhcCCCCHHHHHHHHH-HHHHHHhHhhhhhhhhhHhHHHHHHHhc
Q 001249 875 FLPFFDELSSYLTPMWGKDKTAEERRIAIC-IFDDVAEQCREAALKYYETYLPFLLEAC 932 (1114)
Q Consensus 875 ~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~-~l~~~~~~~~~~~~~~~~~i~~~ll~~l 932 (1114)
+.|++...+=++..+|....-.+.+..+.+ +|..++-.+-.....|+|.++..+.+.+
T Consensus 559 ~HpVVTPalllm~~~L~q~~v~s~~di~~GlfL~~l~l~y~~~SKR~vPEvinFL~~~L 617 (840)
T PF04147_consen 559 RHPVVTPALLLMSEYLSQCRVRSLRDIASGLFLCTLLLEYQSLSKRFVPEVINFLLGLL 617 (840)
T ss_pred cCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 445544433333344433332233333332 2333333332333458887777765554
No 414
>PRK04964 hypothetical protein; Provisional
Probab=22.36 E-value=2.4e+02 Score=21.33 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=32.6
Q ss_pred HHHHHHHhhhhccccHHHHHHHhhhcccc-----cCCHHHHHHHHHhHHHHHH
Q 001249 695 LCCYADELKEGFFPWIDQVAPTLVPLLKF-----YFHEEVRKAAVSAMPELLR 742 (1114)
Q Consensus 695 l~~~~~~~~~~~~p~~~~~~~~l~~~l~~-----~~~~~vr~~a~~al~~l~~ 742 (1114)
+-.+-...+..=.-|+|+.+...++.|++ ...+++|+.|+-+-.+|+.
T Consensus 8 vR~~ya~IgSGd~gYiP~Ai~ca~k~L~~IAad~~Lp~~vRe~AAfAAANLli 60 (66)
T PRK04964 8 VRKRYAEIGSGDLGYVPDALGCVLKALNEIAADEALPESVREKAAYAAANLLV 60 (66)
T ss_pred HHHHHHHhcCCccccCcHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHh
Confidence 33343444444556788888887777754 3467899999988888764
No 415
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=22.32 E-value=4.3e+02 Score=27.74 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=65.1
Q ss_pred CChhHHHHHHHHHHHHHhhc--HHHHHHhHH-HHHHHHHhcCCCC---ChhHHHHHHHHHHHhHhhhchhH-Hhhhhhhh
Q 001249 389 PEWQKHHAALIALAQIAEGC--AKVMVKNLE-QVLSMVLNSFRDP---HPRVRWAAINAIGQLSTDLGPDL-QNQFHPQV 461 (1114)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~--~~~~~~~l~-~i~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~i 461 (1114)
.....+..++.++..+.... ...+..+.. .++..+....... ++.+|.+++..+-.++-.....- ..+....+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 45566666777777665532 234555666 6777766666654 89999999988888876553321 12233346
Q ss_pred HHHHHhhccC-CCChhHHHHHHHHHHHhh
Q 001249 462 LPALAGAMDD-FQNPRVQAHAASAVLNFS 489 (1114)
Q Consensus 462 l~~l~~~l~~-~~~~~v~~~a~~al~~l~ 489 (1114)
+..+.+.+.. ..++++..+++.|+++++
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 6666664332 246888889999999998
No 416
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=22.24 E-value=4.9e+02 Score=25.32 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=41.4
Q ss_pred CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhh
Q 001249 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1114)
Q Consensus 429 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1114)
..+..+...++.|+..+...-...-.--..+..+..+..++.. +++++|..++..|..+|
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s-~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS-PNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 4566677888888888775432111012357788999999988 89999999998888775
No 417
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=22.04 E-value=1.3e+03 Score=27.06 Aligned_cols=168 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHh
Q 001249 148 MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (1114)
Q Consensus 148 l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (1114)
++.-..+-++..|..++..++.-+..+|+.+.... .+..+.-.|.|. +..||....+.+..+....+ ..+.+..
T Consensus 280 fvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn-~~~vRl~v~Kil~~L~s~~p---~~d~ir~ 353 (740)
T COG5537 280 FVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDN-HEGVRLLVSKILLFLCSRIP---HTDAIRR 353 (740)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccc-hHHHHHHHHHHHHHHHhcCC---cchHHHH
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhc
Q 001249 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER 307 (1114)
Q Consensus 228 l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 307 (1114)
.+..+...+.+...-+..-+|..+++.+..+-. .+..=..-+..+...++ +..++-|..--+.+.++|+. .
T Consensus 354 f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~-lg~L~~SeIlIvsscml------Di~pd~r~~~~E~v~~icK~--~ 424 (740)
T COG5537 354 FVERFKDRILEFLRTDSDCVRICSIKSLCYLRI-LGVLSSSEILIVSSCML------DIIPDSRENIVESVESICKI--D 424 (740)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH-hcccchhHHHHHHHHHh------cCCCcchHHHHHHHHHHHHH--H
Q ss_pred cchhhhcchhhH--HHHHHHHHHhh
Q 001249 308 APGMMRKLPQFI--NRLFAILMSML 330 (1114)
Q Consensus 308 ~~~~~~~~~~~~--~~l~~~l~~~l 330 (1114)
+.....+.+.++ ..+++.+.+..
T Consensus 425 aevikEKipl~~k~n~lL~a~~qgs 449 (740)
T COG5537 425 AEVIKEKIPLATKTNRLLEAMKQGS 449 (740)
T ss_pred HHHHHhhcchhhhhhhHHHHHHhhh
No 418
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=22.00 E-value=2.5e+02 Score=21.26 Aligned_cols=48 Identities=21% Similarity=0.164 Sum_probs=31.9
Q ss_pred HHHHHHHhhhhccccHHHHHHHhhhcccc-----cCCHHHHHHHHHhHHHHHH
Q 001249 695 LCCYADELKEGFFPWIDQVAPTLVPLLKF-----YFHEEVRKAAVSAMPELLR 742 (1114)
Q Consensus 695 l~~~~~~~~~~~~p~~~~~~~~l~~~l~~-----~~~~~vr~~a~~al~~l~~ 742 (1114)
+-.+-...+..=.-|+|+.+...++.|++ ...+++|+.|+-+-.+|+.
T Consensus 8 iR~~ya~IgSGd~gYiP~Ai~calk~Ln~iAad~~Lp~~vRE~AAfAAANLli 60 (66)
T PF06786_consen 8 IRELYAQIGSGDQGYIPDAIGCALKTLNDIAADEALPEDVREQAAFAAANLLI 60 (66)
T ss_pred HHHHHHHhcCCccccCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHHH
Confidence 33333334444456777777777777654 3468899999988888764
No 419
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=21.90 E-value=1.1e+03 Score=26.00 Aligned_cols=101 Identities=16% Similarity=0.222 Sum_probs=62.9
Q ss_pred CCCChhHHHHHHHHHHHH--HhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchh-HHhhhhhhhHH
Q 001249 387 AAPEWQKHHAALIALAQI--AEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD-LQNQFHPQVLP 463 (1114)
Q Consensus 387 ~~~~~~~r~aal~~l~~l--~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~il~ 463 (1114)
.+.+-+.|.+++..+... ++..++.+.+....+...+...++-+...-...+...+|..+-..++. ..........|
T Consensus 70 ~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~ 149 (427)
T KOG2842|consen 70 KDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGP 149 (427)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccch
Confidence 356788899998877654 356667777788888889999998877666666655566555544421 11344555556
Q ss_pred HHHhhccCC-CChhHHHHHHHHHHH
Q 001249 464 ALAGAMDDF-QNPRVQAHAASAVLN 487 (1114)
Q Consensus 464 ~l~~~l~~~-~~~~v~~~a~~al~~ 487 (1114)
.+...+.+. .....+..++.++..
T Consensus 150 ~~~li~~d~s~sv~~r~~ca~sl~v 174 (427)
T KOG2842|consen 150 FLALILDDESASIKARSICATSLGT 174 (427)
T ss_pred HHHHHhhccccchHHHHHHHHHHHH
Confidence 555555551 234445555555444
No 420
>PHA02836 putative transmembrane protein; Provisional
Probab=21.66 E-value=1.4e+02 Score=26.53 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhHhhhhhh-hhhHhHHHHHHHhccCC
Q 001249 899 RRIAICIFDDVAEQCREAAL-KYYETYLPFLLEACNDE 935 (1114)
Q Consensus 899 r~~a~~~l~~~~~~~~~~~~-~~~~~i~~~ll~~l~~~ 935 (1114)
-..-++++|-+.+.+|..-. +|++.++|.+.+.+.|.
T Consensus 104 ~LtLiG~~gyise~wGk~k~~kYI~~im~l~fnfl~dn 141 (153)
T PHA02836 104 ALTLIGIIGYISECCGKYGLEKYIQDLLLLLFNFLDDN 141 (153)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHcccc
Confidence 34467899999999997654 59999999999998774
No 421
>PF10978 DUF2785: Protein of unknown function (DUF2785); InterPro: IPR021247 Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function.
Probab=21.66 E-value=4.6e+02 Score=25.39 Aligned_cols=45 Identities=29% Similarity=0.399 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhch
Q 001249 70 HPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLES 116 (1114)
Q Consensus 70 ~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~ 116 (1114)
..-.|.+++.++-.++..+.. ..-|+++....+.+.++..+..|.
T Consensus 12 ~vf~RSFsaL~la~il~~d~~--~~fL~~~~~~~~~~~~~~Yl~~E~ 56 (175)
T PF10978_consen 12 AVFTRSFSALLLALILYADRN--YPFLSQEERQELIDQLIRYLLLEK 56 (175)
T ss_pred ceeeehHHHHHHHHHHhcCCc--ccCCCHHHHHHHHHHHHHHHHHcc
Confidence 345699999999999988633 445899999999999999998763
No 422
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=21.58 E-value=4.4e+02 Score=29.39 Aligned_cols=149 Identities=14% Similarity=0.149 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHH---HhhhchhhhHH-H-HHHhHhhhhcCCC--CHHHHHHHHHHHHHHHhHhhhhhhh-hhHhH
Q 001249 853 EEEVFDQVGEILGTLIK---TFKAAFLPFFD-E-LSSYLTPMWGKDK--TAEERRIAICIFDDVAEQCREAALK-YYETY 924 (1114)
Q Consensus 853 ~~~~~~~~~~~l~~l~~---~~~~~~~~~~~-~-l~~~l~~~l~~~~--~~~~r~~a~~~l~~~~~~~~~~~~~-~~~~i 924 (1114)
...++..+.+++..+.+ ..+......++ . +...+...++... .+..-..|+.++.+++.+=+..+.- .=..+
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 34556666777777776 22233444555 3 4444444443222 3445566778888887654332211 11245
Q ss_pred HHHHHHhcc-C---CChhHHhhhhHHHHHHHhhcC--CCchHHHHHHHHHHHHhhcCCCCCChh-hhhhHHHHHHHHHHH
Q 001249 925 LPFLLEACN-D---ENQDVRQAAVYGLGVCAEFGG--SVVKPLVGEALSRLNVVIRHPNALQPE-NLMAYDNAVSALGKI 997 (1114)
Q Consensus 925 ~~~ll~~l~-~---~~~~vr~~a~~~lg~l~~~~~--~~~~~~~~~~l~~L~~~l~~~~~~~~~-~~~~~~na~~al~~l 997 (1114)
.+.+++.+. . ++.++-...-.++|.+|.+.. +.+... ..++.+.+++..++..... ..+...+.-.++-.+
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~--~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL 230 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSS--NPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDEL 230 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhc--ChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHH
Confidence 556666655 2 566777777778888887654 223332 4566666776655311000 012333344555666
Q ss_pred HhhcCC
Q 001249 998 CQFHRD 1003 (1114)
Q Consensus 998 ~~~~~~ 1003 (1114)
++++|.
T Consensus 231 ~RH~p~ 236 (379)
T PF06025_consen 231 MRHHPS 236 (379)
T ss_pred HccCHH
Confidence 666665
No 423
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=21.33 E-value=5.4e+02 Score=27.76 Aligned_cols=144 Identities=13% Similarity=0.185 Sum_probs=60.2
Q ss_pred HHHHHHHHHcc-C--CCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHh
Q 001249 57 LTLKLAHLLQR-S--PHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (1114)
Q Consensus 57 ~~~~L~~il~~-~--~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~ 133 (1114)
.+..|+..+-. + +.-.+|-.|.-++|..+.++ ++.+..+.+.++..-.+......... +++.+..
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N---------~~~q~~~l~~~i~~~~~~~~~~~~~n---l~~~Ll~ 102 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNN---------EEGQTAFLSTLIPSYASGNSDDPIAN---LLTALLD 102 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT----------HHHHHHHHHTTSSTT--SS--SSSS----HHHHHT-
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcC---------HHHHHHHHHHHhccCCCCcccchhhH---HHHHHHH
Confidence 34556665544 3 57889999999999998775 45554444333332222111011111 3333332
Q ss_pred cccC--CC---CchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 001249 134 NILP--EN---GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNA 208 (1114)
Q Consensus 134 ~~~~--~~---~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~ 208 (1114)
.+.+ .+ .|- --.++..+-..++..|+.++.+- ...+..++.-...+..+...+...+....++.++..-+..
T Consensus 103 ~~~~~~~dpy~~wf--Aa~il~hll~dn~~~Ke~al~V~-~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~L 179 (312)
T PF04869_consen 103 YDSDLSLDPYRCWF--AAVILMHLLRDNPEAKEQALRVT-EGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLML 179 (312)
T ss_dssp -----SS-HHHHHH--HHHHHHHHHTT-HHHHHHHTT---EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHH
T ss_pred hhccccCCHHHHHH--HHHHHHHHHhcCHHHHHHHHccc-CCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence 1111 01 221 11111222234455566555551 1111222322234555555555555533377888888888
Q ss_pred HHHHHHh
Q 001249 209 VINFIQC 215 (1114)
Q Consensus 209 l~~l~~~ 215 (1114)
|..++-.
T Consensus 180 L~~WL~e 186 (312)
T PF04869_consen 180 LIVWLFE 186 (312)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 7777643
No 424
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=21.21 E-value=1.7e+02 Score=20.94 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHh
Q 001249 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (1114)
Q Consensus 100 ~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~ 133 (1114)
..+++|+.+++.|... +.. |..+..+|+.+..
T Consensus 3 n~eYLKNVll~fl~~~-e~~-r~~ll~vi~tlL~ 34 (46)
T smart00755 3 NFEYLKNVLLQFLTLR-ESE-RETLLKVISTVLQ 34 (46)
T ss_pred cHHHHHHHHHHHhccC-cch-HHHHHHHHHHHhC
Confidence 3578999999999873 444 8888888887765
No 425
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=20.82 E-value=7.5e+02 Score=23.96 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhh
Q 001249 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAK 118 (1114)
Q Consensus 68 ~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~ 118 (1114)
..++.+|++|.-.|++ .+++.......+|.|+|.-|...
T Consensus 82 ~~~~~Vr~yAvr~L~~------------~~~e~l~~YlpQLVQaLryd~~~ 120 (175)
T cd00871 82 PGHPLVLQYAVRVLES------------YPVETVFFYIPQIVQALRYDKMG 120 (175)
T ss_pred CCCHHHHHHHHHHHHh------------CCHHHHHHHHHHHHHHHhccccc
Confidence 3467888888888886 45666666667788888876533
No 426
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.61 E-value=1.4e+03 Score=26.60 Aligned_cols=111 Identities=13% Similarity=0.122 Sum_probs=59.3
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcc-------hH-hHHHhhHHHHHH
Q 001249 163 AFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA-------DR-DRFQDLLPLMMR 234 (1114)
Q Consensus 163 al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-------~~-~~~~~l~p~ll~ 234 (1114)
-.+++..+|+..++.+..+..++...+.+++.-+-..+.-...++.....+-.+..+. .. -.+..++|.++.
T Consensus 577 ~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~~~e~v~hfgspankgrcTqnlafL~~efL~tvf~ 656 (748)
T KOG4541|consen 577 DVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTGESHSAGLHTDPEGVFHFGSPANKGRCTQNLAFLSREFLRTVFH 656 (748)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCccccchHhhccChHhhhccccccccccccccHHHHHHHHHHHHHH
Confidence 4556666777777777776677777666554432001223333344433333322110 00 112233444444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Q 001249 235 TLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVG 275 (1114)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~ 275 (1114)
.+. .++-+.+....++.+|-.++-..+..+..+...++.
T Consensus 657 ~ll--~~~~~t~l~s~a~~Aly~LI~~e~~~y~elvneL~s 695 (748)
T KOG4541|consen 657 FLL--FEDYSTDLVSTAADALYPLILCEPNLYQELVNELIS 695 (748)
T ss_pred HHH--HhhcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 332 244466777888888888877777777766666554
No 427
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=20.50 E-value=7.4e+02 Score=23.54 Aligned_cols=100 Identities=12% Similarity=0.102 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHH-HHHHHH
Q 001249 159 LQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVINFIQCLTSSADRDRFQDLLP-LMMRTL 236 (1114)
Q Consensus 159 ~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p-~ll~~l 236 (1114)
.-..++.++..+.++.--.....-+.++..+....+... +..+...|+..+-+++..-+ ..+...-. --++.+
T Consensus 33 ~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~-----~ly~~V~~evt~~~L 107 (160)
T PF11841_consen 33 ILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSP-----KLYQLVEQEVTLESL 107 (160)
T ss_pred HHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCH-----HHHHHHhccCCHHHH
Confidence 334466667777664211111122333444444444332 56777788888888776421 11111100 113344
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHccch
Q 001249 237 TESLNNGNEATAQEALELLIELAGTEP 263 (1114)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~~l~~~~~ 263 (1114)
...++..+++....++..+..+....+
T Consensus 108 i~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 108 IRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 455566788888888888877665443
Done!