Query 001249
Match_columns 1114
No_of_seqs 396 out of 3136
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 18:32:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 100.0 7.1E-69 2.4E-73 673.6 79.1 826 17-1114 5-851 (852)
2 2bpt_A Importin beta-1 subunit 100.0 1.9E-56 6.5E-61 566.6 82.1 799 19-952 1-857 (861)
3 1qgr_A Protein (importin beta 100.0 4.4E-54 1.5E-58 546.0 75.5 800 23-954 2-873 (876)
4 1u6g_C TIP120 protein, CAND1; 100.0 8.8E-53 3E-57 549.2 68.1 948 18-1066 2-1155(1230)
5 1wa5_C Importin alpha RE-expor 100.0 1.5E-44 5.2E-49 456.4 72.7 688 20-784 3-778 (960)
6 2x19_B Importin-13; nuclear tr 100.0 5.5E-42 1.9E-46 437.0 64.2 711 19-800 21-849 (963)
7 2x1g_F Cadmus; transport prote 100.0 3.3E-42 1.1E-46 438.1 56.6 767 19-882 4-919 (971)
8 1qgr_A Protein (importin beta 100.0 1.7E-39 5.9E-44 411.9 71.1 759 68-1002 12-874 (876)
9 1u6g_C TIP120 protein, CAND1; 100.0 2.7E-39 9.1E-44 422.1 74.7 963 59-1110 9-1154(1230)
10 3m1i_C Exportin-1; heat repeat 100.0 7.7E-39 2.6E-43 407.6 73.7 694 19-801 13-837 (1049)
11 2bpt_A Importin beta-1 subunit 100.0 7.7E-35 2.6E-39 368.5 77.7 776 108-999 9-857 (861)
12 4hat_C Exportin-1; heat repeat 100.0 2.1E-35 7.1E-40 364.2 64.3 722 19-800 13-881 (1023)
13 3ibv_A Exportin-T; karyopherin 100.0 8E-36 2.7E-40 368.3 57.6 771 18-885 2-941 (980)
14 4fdd_A Transportin-1; heat rep 100.0 2.2E-34 7.5E-39 360.8 68.5 747 231-1113 14-819 (852)
15 1ibr_B P95, importin beta-1 su 100.0 3.8E-37 1.3E-41 359.5 33.0 430 23-470 2-461 (462)
16 3gjx_A Exportin-1; transport, 100.0 3.8E-30 1.3E-34 314.3 73.0 722 19-801 25-908 (1073)
17 1b3u_A Protein (protein phosph 100.0 8E-30 2.7E-34 307.6 47.1 572 106-795 13-585 (588)
18 1b3u_A Protein (protein phosph 100.0 8.5E-29 2.9E-33 298.6 47.1 554 19-643 7-567 (588)
19 3a6p_A Exportin-5; exportin-5, 100.0 8.6E-26 2.9E-30 287.4 52.4 514 22-555 11-682 (1204)
20 1wa5_C Importin alpha RE-expor 99.9 5.3E-21 1.8E-25 241.5 66.9 785 60-1113 6-957 (960)
21 2x1g_F Cadmus; transport prote 99.9 1.8E-18 6.1E-23 219.9 62.1 735 153-1001 17-860 (971)
22 2x19_B Importin-13; nuclear tr 99.9 9.7E-18 3.3E-22 213.4 66.8 716 108-1002 29-849 (963)
23 1ibr_B P95, importin beta-1 su 99.8 7.9E-18 2.7E-22 195.8 34.1 405 108-553 6-460 (462)
24 2qk1_A Protein STU2; STU2P, XM 99.8 7.6E-19 2.6E-23 181.1 17.4 213 373-591 12-234 (249)
25 2jdq_A Importin alpha-1 subuni 99.8 6.1E-17 2.1E-21 187.4 32.5 369 139-536 13-394 (450)
26 2jdq_A Importin alpha-1 subuni 99.8 4.5E-17 1.5E-21 188.5 29.8 402 58-531 22-442 (450)
27 3m1i_C Exportin-1; heat repeat 99.8 5.8E-13 2E-17 169.6 70.2 740 108-1000 21-879 (1049)
28 3now_A UNC-45 protein, SD10334 99.7 5E-12 1.7E-16 149.4 64.5 721 154-1001 19-784 (810)
29 3now_A UNC-45 protein, SD10334 99.7 6.3E-13 2.2E-17 156.9 55.9 674 22-798 9-783 (810)
30 2vgl_B AP-2 complex subunit be 99.7 8.6E-15 2.9E-19 173.5 39.5 477 18-575 44-530 (591)
31 2qk2_A LP04448P; mini spindles 99.7 7.1E-17 2.4E-21 167.9 16.4 207 372-591 10-219 (242)
32 3ibv_A Exportin-T; karyopherin 99.7 7.3E-12 2.5E-16 155.1 62.7 776 64-952 15-917 (980)
33 2vgl_B AP-2 complex subunit be 99.7 1.4E-14 4.8E-19 171.6 36.3 515 21-620 12-530 (591)
34 1wa5_B Importin alpha subunit; 99.7 2.1E-15 7.2E-20 177.6 29.0 403 58-533 89-511 (530)
35 1wa5_B Importin alpha subunit; 99.7 1.6E-14 5.4E-19 170.1 35.7 365 140-536 84-461 (530)
36 4b8j_A Importin subunit alpha- 99.7 2.8E-14 9.6E-19 168.1 34.5 359 186-580 76-446 (528)
37 4b8j_A Importin subunit alpha- 99.7 2.7E-14 9.1E-19 168.3 31.5 358 106-536 77-447 (528)
38 4hat_C Exportin-1; heat repeat 99.7 1.5E-11 5.2E-16 152.1 56.1 623 57-745 139-881 (1023)
39 1w63_A Adapter-related protein 99.6 7E-13 2.4E-17 157.4 41.0 475 68-621 81-576 (618)
40 2z6g_A B-catenin; FULL-length, 99.6 3.8E-13 1.3E-17 164.2 38.7 511 58-625 117-666 (780)
41 2z6g_A B-catenin; FULL-length, 99.6 2.1E-13 7.2E-18 166.5 35.9 414 106-555 118-541 (780)
42 3gjx_A Exportin-1; transport, 99.6 8.8E-10 3E-14 135.4 67.0 742 68-979 39-938 (1073)
43 1w63_A Adapter-related protein 99.6 5.5E-12 1.9E-16 149.7 37.3 449 22-532 70-577 (618)
44 3ul1_B Importin subunit alpha- 99.5 5.1E-12 1.7E-16 146.9 34.8 361 145-535 59-433 (510)
45 3tpo_A Importin subunit alpha- 99.5 5E-12 1.7E-16 147.9 35.0 364 142-535 75-452 (529)
46 2z6h_A Catenin beta-1, beta-ca 99.5 7.7E-12 2.6E-16 150.5 37.0 476 105-623 16-528 (644)
47 2z6h_A Catenin beta-1, beta-ca 99.5 5.9E-12 2E-16 151.5 35.5 468 22-535 14-530 (644)
48 1jdh_A Beta-catenin; beta-cate 99.5 3E-12 1E-16 151.3 29.7 461 22-530 17-528 (529)
49 1jdh_A Beta-catenin; beta-cate 99.5 2.5E-11 8.6E-16 143.4 35.1 472 103-620 17-528 (529)
50 2vgl_A Adaptor protein complex 99.5 4.1E-10 1.4E-14 132.9 42.1 441 67-576 84-588 (621)
51 3ul1_B Importin subunit alpha- 99.5 3E-11 1E-15 140.4 32.0 360 187-578 60-431 (510)
52 2qk2_A LP04448P; mini spindles 99.5 2.4E-12 8.2E-17 133.6 20.3 192 352-551 29-225 (242)
53 2vgl_A Adaptor protein complex 99.5 3.4E-10 1.1E-14 133.6 40.5 446 22-531 74-588 (621)
54 3tpo_A Importin subunit alpha- 99.5 4.2E-11 1.4E-15 140.1 32.7 361 186-578 78-450 (529)
55 2qk1_A Protein STU2; STU2P, XM 99.4 2.8E-12 9.4E-17 132.0 16.0 169 376-545 59-234 (249)
56 3a6p_A Exportin-5; exportin-5, 99.2 2E-06 6.9E-11 109.8 59.7 537 116-778 25-682 (1204)
57 3l6x_A Catenin delta-1; cateni 99.2 2.2E-08 7.5E-13 114.3 33.2 371 139-532 43-476 (584)
58 4hxt_A De novo protein OR329; 99.2 2.2E-09 7.4E-14 112.5 22.5 243 234-541 5-250 (252)
59 2iw3_A Elongation factor 3A; a 99.1 1.1E-08 3.8E-13 122.6 29.2 297 245-578 28-328 (986)
60 1xm9_A Plakophilin 1; armadill 99.1 2.3E-08 7.9E-13 114.0 30.6 356 145-531 4-448 (457)
61 4hxt_A De novo protein OR329; 99.1 3.7E-09 1.3E-13 110.7 20.9 243 379-631 4-250 (252)
62 1oyz_A Hypothetical protein YI 99.1 7.7E-09 2.6E-13 110.0 21.8 253 233-572 25-277 (280)
63 3nmz_A APC variant protein; pr 99.0 5.2E-08 1.8E-12 108.7 27.9 361 143-535 32-453 (458)
64 4db6_A Armadillo repeat protei 99.0 3.7E-09 1.3E-13 107.0 17.2 193 378-576 13-208 (210)
65 2iw3_A Elongation factor 3A; a 99.0 1.8E-07 6.3E-12 112.2 34.1 305 105-491 16-325 (986)
66 4db8_A Armadillo-repeat protei 99.0 5E-09 1.7E-13 109.7 18.3 232 236-532 17-251 (252)
67 3opb_A SWI5-dependent HO expre 99.0 1.4E-06 4.6E-11 101.0 39.2 424 96-556 285-759 (778)
68 1oyz_A Hypothetical protein YI 99.0 8.9E-08 3E-12 101.7 26.6 224 274-576 25-249 (280)
69 4db8_A Armadillo-repeat protei 99.0 5.9E-09 2E-13 109.1 16.3 233 380-621 15-250 (252)
70 3l6x_A Catenin delta-1; cateni 99.0 3.3E-07 1.1E-11 104.7 31.1 361 107-490 52-476 (584)
71 3nmz_A APC variant protein; pr 99.0 9.2E-07 3.1E-11 98.7 33.5 384 18-493 28-453 (458)
72 4ady_A RPN2, 26S proteasome re 99.0 0.00015 5.1E-09 86.1 53.0 125 855-997 593-717 (963)
73 1xm9_A Plakophilin 1; armadill 98.9 2.7E-07 9.3E-12 105.1 28.4 360 106-491 5-450 (457)
74 3opb_A SWI5-dependent HO expre 98.9 0.00029 9.8E-09 81.9 54.1 559 142-798 131-729 (778)
75 2db0_A 253AA long hypothetical 98.8 1.6E-06 5.5E-11 78.2 22.5 214 231-489 32-245 (253)
76 3ltj_A Alpharep-4; protein eng 98.8 1.9E-07 6.4E-12 93.5 17.8 188 372-620 9-196 (201)
77 3ltm_A Alpha-REP4; protein eng 98.8 1E-07 3.4E-12 96.4 15.6 185 378-623 20-204 (211)
78 1xqr_A HSPBP1 protein; armadil 98.8 2.8E-07 9.5E-12 96.8 19.2 152 380-535 84-241 (296)
79 3ltm_A Alpha-REP4; protein eng 98.7 4.2E-07 1.4E-11 91.7 19.6 191 18-262 15-205 (211)
80 1xqr_A HSPBP1 protein; armadil 98.7 3.3E-07 1.1E-11 96.2 18.9 179 392-578 55-239 (296)
81 4db6_A Armadillo repeat protei 98.7 9E-08 3.1E-12 96.7 13.4 154 378-532 55-209 (210)
82 3ltj_A Alpharep-4; protein eng 98.7 1.6E-06 5.6E-11 86.5 20.4 187 19-259 11-197 (201)
83 2of3_A ZYG-9; multifunctional 98.7 2.5E-06 8.7E-11 86.0 21.4 189 382-588 51-246 (266)
84 4ffb_C Protein STU2; tubulin f 98.6 8.2E-07 2.8E-11 93.6 17.4 189 382-581 14-216 (278)
85 4gmo_A Putative uncharacterize 98.5 0.0002 6.8E-09 85.7 37.7 156 418-577 35-214 (684)
86 2db0_A 253AA long hypothetical 98.5 6.4E-05 2.2E-09 68.0 24.5 215 272-532 32-246 (253)
87 4ady_A RPN2, 26S proteasome re 98.5 0.00016 5.6E-09 85.7 34.4 329 121-531 375-718 (963)
88 3nmw_A APC variant protein; AR 98.4 2.3E-05 7.7E-10 84.7 23.6 271 157-493 46-337 (354)
89 3nmw_A APC variant protein; AR 98.4 1.2E-05 4.1E-10 86.9 20.0 223 287-536 97-338 (354)
90 2of3_A ZYG-9; multifunctional 98.3 1.7E-05 6E-10 79.9 16.6 161 378-551 88-255 (266)
91 1vsy_5 Proteasome activator BL 98.3 0.00044 1.5E-08 84.7 31.7 465 22-534 133-666 (997)
92 3b2a_A TON_1937, putative unch 98.2 0.00019 6.5E-09 68.5 20.7 184 378-577 34-218 (265)
93 3tjz_B Coatomer subunit gamma; 98.2 1.9E-05 6.5E-10 83.9 15.8 301 120-484 44-347 (355)
94 3b2a_A TON_1937, putative unch 98.2 4.3E-05 1.5E-09 72.8 16.2 199 390-621 18-217 (265)
95 1te4_A Conserved protein MTH18 98.2 2.5E-07 8.7E-12 84.6 0.9 124 372-529 7-130 (131)
96 3oc3_A Helicase MOT1, MOT1; re 98.2 6.1E-06 2.1E-10 88.6 10.3 159 354-531 244-403 (800)
97 4ffb_C Protein STU2; tubulin f 98.1 3E-05 1E-09 81.6 15.7 154 378-538 56-218 (278)
98 3grl_A General vesicular trans 98.0 0.042 1.4E-06 62.2 41.5 215 22-263 21-244 (651)
99 3tjz_B Coatomer subunit gamma; 98.0 9.1E-05 3.1E-09 78.7 15.3 289 95-442 60-348 (355)
100 3oc3_A Helicase MOT1, MOT1; re 98.0 2E-05 6.8E-10 84.8 9.7 206 68-302 185-403 (800)
101 1vsy_5 Proteasome activator BL 97.8 0.00063 2.2E-08 83.3 21.3 172 358-535 782-969 (997)
102 4gmo_A Putative uncharacterize 97.7 0.044 1.5E-06 65.4 33.8 188 107-301 38-256 (684)
103 1te4_A Conserved protein MTH18 97.6 7.5E-05 2.6E-09 68.0 6.3 86 380-487 45-130 (131)
104 3tt9_A Plakophilin-2; cell adh 97.6 0.0022 7.6E-08 63.8 17.3 174 379-555 10-205 (233)
105 3grl_A General vesicular trans 97.4 0.15 5E-06 57.9 29.6 323 143-492 21-396 (651)
106 3tt9_A Plakophilin-2; cell adh 97.3 0.001 3.5E-08 66.3 10.8 200 420-622 10-229 (233)
107 3l9t_A Putative uncharacterize 97.3 0.018 6.1E-07 55.9 18.4 143 375-537 69-212 (240)
108 1vsy_4 Proteasome activator BL 97.1 0.22 7.6E-06 59.3 29.3 440 416-932 129-666 (799)
109 3l9t_A Putative uncharacterize 96.4 0.25 8.5E-06 48.0 18.6 167 24-215 39-208 (240)
110 1vsy_4 Proteasome activator BL 96.0 1.3 4.6E-05 52.7 25.9 302 412-744 333-689 (799)
111 3u0r_A Apoptosis inhibitor 5; 95.9 0.7 2.4E-05 49.9 20.7 124 355-495 45-168 (507)
112 3o2t_A Symplekin; heat repeat, 95.7 2.7 9.3E-05 44.8 24.9 176 139-329 59-272 (386)
113 4atg_A TAF6; transcription, TF 95.7 0.39 1.3E-05 45.5 15.7 128 411-556 8-143 (196)
114 3gs3_A Symplekin, LD45768P; he 95.5 2.3 7.7E-05 42.7 25.7 160 139-303 49-243 (257)
115 4atg_A TAF6; transcription, TF 95.1 0.47 1.6E-05 45.0 14.2 130 863-999 28-162 (196)
116 1upk_A MO25 protein; transfera 94.8 4.3 0.00015 41.8 25.6 181 116-304 90-284 (341)
117 1w9c_A CRM1 protein, exportin 94.0 2.4 8.1E-05 43.7 17.6 144 413-557 68-228 (321)
118 3gs3_A Symplekin, LD45768P; he 93.0 8.2 0.00028 38.6 25.1 155 22-215 15-174 (257)
119 1ho8_A Vacuolar ATP synthase s 92.9 13 0.00044 40.6 27.0 355 53-447 75-476 (480)
120 1w9c_A CRM1 protein, exportin 92.4 3.6 0.00012 42.3 16.0 191 517-742 43-245 (321)
121 2npp_B PP2A, B subunit, serine 90.6 22 0.00075 38.7 24.2 93 205-303 304-399 (449)
122 3u0r_A Apoptosis inhibitor 5; 90.5 22 0.00077 38.5 35.6 298 68-412 39-364 (507)
123 2jak_A Serine/threonine-protei 89.1 8.6 0.0003 40.8 15.6 239 388-640 140-387 (392)
124 1lrv_A LRV, leucine-rich repea 88.9 0.13 4.4E-06 51.5 1.5 92 382-528 151-242 (244)
125 3ldz_A STAM-1, signal transduc 88.7 3 0.0001 37.3 10.3 77 417-494 41-118 (140)
126 3o2t_A Symplekin; heat repeat, 88.3 29 0.001 36.9 24.6 171 373-552 59-272 (386)
127 1x5b_A Signal transducing adap 88.0 5.2 0.00018 36.8 11.7 78 417-494 51-129 (163)
128 1lsh_A Lipovitellin (LV-1N, LV 87.5 40 0.0014 42.1 23.0 245 13-304 317-577 (1056)
129 3fga_B Serine/threonine-protei 87.4 33 0.0011 36.6 23.8 93 206-304 272-367 (403)
130 2npp_B PP2A, B subunit, serine 86.8 39 0.0013 36.7 21.1 237 20-269 160-408 (449)
131 1lsh_A Lipovitellin (LV-1N, LV 86.4 25 0.00084 43.9 20.3 174 19-210 353-539 (1056)
132 1juq_A ADP-ribosylation factor 85.9 7.1 0.00024 36.3 11.4 78 417-494 49-132 (171)
133 3dad_A FH1/FH2 domain-containi 85.1 38 0.0013 35.0 17.1 149 150-303 125-286 (339)
134 3ldz_A STAM-1, signal transduc 82.5 7 0.00024 34.9 9.4 76 377-452 42-119 (140)
135 3fga_B Serine/threonine-protei 82.2 57 0.0019 34.8 24.6 229 232-491 130-367 (403)
136 3dad_A FH1/FH2 domain-containi 81.1 31 0.0011 35.6 14.6 146 387-535 128-289 (339)
137 3zyq_A Hepatocyte growth facto 79.4 9.8 0.00034 37.3 10.2 78 417-494 44-122 (226)
138 3g2s_A C-terminal fragment of 79.0 14 0.00048 33.3 10.1 77 418-494 48-130 (149)
139 1lrv_A LRV, leucine-rich repea 78.3 0.67 2.3E-05 46.3 1.4 68 381-485 174-241 (244)
140 1mhq_A ADP-ribosylation factor 77.5 30 0.001 31.1 11.9 78 417-494 37-120 (148)
141 2fv2_A RCD1 required for cell 77.4 16 0.00055 35.9 10.5 93 860-953 76-175 (268)
142 1x5b_A Signal transducing adap 76.8 24 0.00083 32.3 11.4 78 501-581 50-129 (163)
143 1dvp_A HRS, hepatocyte growth 74.8 20 0.00067 35.0 10.9 78 417-494 41-119 (220)
144 3g2s_A C-terminal fragment of 74.3 24 0.00083 31.7 10.4 75 377-451 48-130 (149)
145 1upk_A MO25 protein; transfera 73.6 87 0.003 32.3 21.5 188 68-260 89-283 (341)
146 1juq_A ADP-ribosylation factor 73.0 39 0.0013 31.2 11.8 92 502-596 49-144 (171)
147 1mhq_A ADP-ribosylation factor 72.3 22 0.00074 32.0 9.6 75 377-451 38-120 (148)
148 3s4w_B Protein FACD2, fanconi 71.8 78 0.0027 39.6 17.2 206 42-261 327-550 (1323)
149 1ho8_A Vacuolar ATP synthase s 71.8 1.2E+02 0.0041 33.1 25.0 58 430-490 417-476 (480)
150 2b6c_A Hypothetical protein EF 70.1 37 0.0013 33.1 11.6 139 380-541 58-197 (220)
151 1elk_A Target of MYB1; superhe 69.6 56 0.0019 29.7 11.9 78 417-494 52-134 (157)
152 1sz9_A PCF11 protein; RNA poly 69.0 11 0.00038 33.7 6.9 90 882-975 44-137 (144)
153 2fv2_A RCD1 required for cell 68.5 94 0.0032 30.6 19.2 167 21-215 2-175 (268)
154 3zyq_A Hepatocyte growth facto 68.3 54 0.0019 32.0 12.3 92 501-595 43-136 (226)
155 4flb_A Regulation of nuclear P 67.8 28 0.00096 30.6 9.3 67 417-494 7-73 (132)
156 1vdy_A Hypothetical protein (R 66.7 34 0.0011 30.3 9.2 74 373-446 45-129 (140)
157 3qml_C Protein SLS1, nucleotid 66.3 54 0.0018 33.2 11.7 140 156-303 41-189 (315)
158 1sz9_A PCF11 protein; RNA poly 63.5 63 0.0021 28.8 10.7 74 456-530 39-112 (144)
159 1vdy_A Hypothetical protein (R 63.2 32 0.0011 30.4 8.4 93 905-997 31-128 (140)
160 1elk_A Target of MYB1; superhe 63.1 61 0.0021 29.4 10.8 79 501-580 51-133 (157)
161 1dvp_A HRS, hepatocyte growth 62.7 60 0.002 31.5 11.4 77 501-580 40-118 (220)
162 3ebb_A Phospholipase A2-activa 62.1 89 0.003 32.1 13.1 101 390-490 161-263 (304)
163 2jak_A Serine/threonine-protei 59.1 1.9E+02 0.0064 30.8 17.8 35 222-256 329-363 (392)
164 2b6c_A Hypothetical protein EF 52.9 45 0.0015 32.4 8.7 95 854-962 104-198 (220)
165 1t06_A Hypothetical protein; s 50.6 28 0.00095 34.4 6.8 73 376-450 107-183 (235)
166 3rru_A TOM1L1 protein; structu 49.1 84 0.0029 28.3 9.0 92 417-508 52-148 (152)
167 4fu3_A Regulation of nuclear P 48.6 65 0.0022 28.3 8.3 85 457-552 4-91 (135)
168 3jxy_A Alkylpurine DNA glycosy 43.1 2.4E+02 0.0083 27.4 15.1 154 36-215 41-196 (232)
169 3d9j_A RNA-binding protein 16; 42.9 1.8E+02 0.0062 25.8 12.3 70 479-553 23-96 (145)
170 3ebb_A Phospholipase A2-activa 42.3 3E+02 0.01 28.1 14.2 115 142-261 146-264 (304)
171 4fu3_A Regulation of nuclear P 37.8 2E+02 0.007 25.0 10.0 63 420-493 9-71 (135)
172 2km4_A Regulator of TY1 transp 30.7 1.9E+02 0.0064 25.6 8.3 65 419-493 7-72 (142)
173 1k8k_G P16, ARP2/3 complex 16 29.0 2.4E+02 0.0081 25.1 8.2 58 1056-1113 51-110 (151)
174 3ut4_A CTHE_2751, putative unc 28.5 2.9E+02 0.01 24.0 9.2 96 375-488 29-128 (134)
175 2x6h_A GH13170P, VPS34, phosph 28.4 1.8E+02 0.0061 33.8 9.5 81 20-116 75-156 (696)
176 3rru_A TOM1L1 protein; structu 27.2 1.7E+02 0.0057 26.3 7.2 78 502-580 52-133 (152)
177 2km4_A Regulator of TY1 transp 24.7 3.6E+02 0.012 23.7 9.5 110 17-131 1-113 (142)
178 3tj1_A RNA polymerase I-specif 23.9 8.5E+02 0.029 27.8 24.4 54 920-973 417-472 (649)
179 3d9j_A RNA-binding protein 16; 23.5 3E+02 0.01 24.4 8.2 88 123-214 24-119 (145)
180 3eg5_B Protein diaphanous homo 20.7 7.6E+02 0.026 26.1 14.0 100 118-217 134-249 (383)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=7.1e-69 Score=673.59 Aligned_cols=826 Identities=19% Similarity=0.274 Sum_probs=674.3
Q ss_pred hCCCh---HHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc--cCCCHHHHHHHHHHHHHhcccCCCC
Q 001249 17 LGPDS---APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDDSF 91 (1114)
Q Consensus 17 ~~~~~---~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~--~~~~~~~R~~A~~~Lk~~l~~~~~~ 91 (1114)
|.|++ +++.++|++++|||+++|++||++|+++++ +|+ |..+|++++. ++.++.+|++|+++|||.+.++
T Consensus 5 w~~~~~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~p~-~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~--- 79 (852)
T 4fdd_A 5 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPD-FNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH--- 79 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-SHH-HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS---
T ss_pred CCCChhhHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHh-CCC-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHc---
Confidence 45544 467778888999999999999999999988 787 4688999998 4788999999999999999887
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhh
Q 001249 92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1114)
Q Consensus 92 ~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~ 171 (1114)
|..++++.+..||..+++.|.+ +++.+|+.++.+++.|++.+++ +.||++++.+.+.++++++.+|++++.+++.++
T Consensus 80 -w~~~~~~~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 80 -FQNFPNGVTDFIKSECLNNIGD-SSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKIC 156 (852)
T ss_dssp -GGGCCHHHHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred -cCCCCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 6889999999999999998855 799999999999999999999999999999999
Q ss_pred hhhhhhhh-----hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHH
Q 001249 172 QYIGDTLT-----PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1114)
Q Consensus 172 ~~~~~~~~-----~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~ 246 (1114)
+..++.+. ..++.+++.+.++++++ ++.||..|++++..++... ...+...++.+++.+...+++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~-----~~~~~~~~~~~l~~l~~~~~d~~~~ 230 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISR-----TQALMLHIDSFIENLFALAGDEEPE 230 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTT-----CHHHHTSHHHHHHHHHHHHTCCCHH
T ss_pred HHhHHHhchhhhcchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 98876543 24788999999999987 9999999999998776543 1335566777888888888899999
Q ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHH
Q 001249 247 TAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAIL 326 (1114)
Q Consensus 247 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l 326 (1114)
+|..++++|..+++.+++.+.+|+..+++.++..+.+ .++++|..|+++|..+++. +...+...+++..++|.+
T Consensus 231 vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~----~~~~~~~~~~~~~l~p~l 304 (852)
T 4fdd_A 231 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQ----PICKDVLVRHLPKLIPVL 304 (852)
T ss_dssp HHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTS----TTHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998764 4788999999999999873 111122467889999999
Q ss_pred HHhhcCCCCCcccccCC--CCCccc---cCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHH
Q 001249 327 MSMLLDIEDDPLWHSAE--TEDEDA---GESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIAL 401 (1114)
Q Consensus 327 ~~~l~~~~~~~~~~~~~--~~~ed~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l 401 (1114)
+..|.+.+++..|...+ +|++|| +++..++.+..+++.++...| +.+++.+++++.+.+++++|+.|++|+.++
T Consensus 305 l~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~al 383 (852)
T 4fdd_A 305 VNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVL 383 (852)
T ss_dssp HHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99998877666675333 111111 345667789999999999998 789999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHH
Q 001249 402 AQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (1114)
Q Consensus 402 ~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a 481 (1114)
|.+++++++.+.++++.+++.+++.++|+++.||.+++++++++++.+++.....|+..+++.+++.+.+ ++++||..|
T Consensus 384 g~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~a 462 (852)
T 4fdd_A 384 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAA 462 (852)
T ss_dssp HHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC-CCHHHHHHH
Confidence 9999999988889999999999999999999999999999999999886644467899999999999998 899999999
Q ss_pred HHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhh--hhHhhhhHHHHHHHhhccCc
Q 001249 482 ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATDK 559 (1114)
Q Consensus 482 ~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~--~~~~~i~~~L~~~l~~~~~~ 559 (1114)
+++|..+++.++.. +.||++.+++.|..+++.........++.+++.++...+..+. +|++.++|.+.+.+....+.
T Consensus 463 ~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~ 541 (852)
T 4fdd_A 463 CSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE 541 (852)
T ss_dssp HHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhhHh-hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccc
Confidence 99999999988765 7899999999999999988877778899999999999887764 59999999888776543221
Q ss_pred cchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHH
Q 001249 560 SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPL 639 (1114)
Q Consensus 560 ~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~l 639 (1114)
+ ..++ .+++|++.++. .+|..|.||++.+++.+
T Consensus 542 ~-~~~~-~~~~~l~~i~~---------------------------------------------~~g~~~~~~~~~i~~~~ 574 (852)
T 4fdd_A 542 D-KDLF-PLLECLSSVAT---------------------------------------------ALQSGFLPYCEPVYQRC 574 (852)
T ss_dssp C-TTHH-HHHHHHHHHHH---------------------------------------------HHGGGGHHHHHHHHHHH
T ss_pred c-HHHH-HHHHHHHHHHH---------------------------------------------HHhHhHHHHHHHHHHHH
Confidence 1 1222 23444444433 33333333333332221
Q ss_pred HHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhh
Q 001249 640 LQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP 719 (1114)
Q Consensus 640 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~ 719 (1114)
++.+
T Consensus 575 ~~~l---------------------------------------------------------------------------- 578 (852)
T 4fdd_A 575 VNLV---------------------------------------------------------------------------- 578 (852)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1111
Q ss_pred cccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHh
Q 001249 720 LLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQIS 799 (1114)
Q Consensus 720 ~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~ 799 (1114)
... +.... .. ..+
T Consensus 579 --~~~---------------l~~~~-----------------------------~~-~~~-------------------- 591 (852)
T 4fdd_A 579 --QKT---------------LAQAM-----------------------------LN-NAQ-------------------- 591 (852)
T ss_dssp --HHH---------------HHHHH-----------------------------HH-HHC--------------------
T ss_pred --HHH---------------HHHHH-----------------------------Hh-hcC--------------------
Confidence 000 00000 00 000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhH
Q 001249 800 GPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFF 879 (1114)
Q Consensus 800 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 879 (1114)
.+..++ .+.+++..+.++++.+++..|..+.+++
T Consensus 592 -----------------------------------~~~~~~-----------~d~~~~~~~l~~l~~l~~~l~~~~~~~~ 625 (852)
T 4fdd_A 592 -----------------------------------PDQYEA-----------PDKDFMIVALDLLSGLAEGLGGNIEQLV 625 (852)
T ss_dssp -----------------------------------TTTSCC-----------CCTHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred -----------------------------------CcccCC-----------CcchHHHHHHHHHHHHHHHHhHhHHHHh
Confidence 000000 0122444577888889999999999998
Q ss_pred --HHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCC
Q 001249 880 --DELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSV 957 (1114)
Q Consensus 880 --~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~ 957 (1114)
..+++.+...+ .+.....|..++.++++++..+|..+.+|++.++|.+.+.+.++++.+|++|++++|.++.+.++.
T Consensus 626 ~~~~~~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~ 704 (852)
T 4fdd_A 626 ARSNILTLMYQCM-QDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE 704 (852)
T ss_dssp HTCCHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGG
T ss_pred cCCcHHHHHHHHh-CCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHh
Confidence 56889888877 456788999999999999999999999999999999999998889999999999999999999988
Q ss_pred chHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 001249 958 VKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCLPIKGDLIEAKIVHEQLC 1035 (1114)
Q Consensus 958 ~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~~~~~l~~Lp~~~d~~e~~~~~~~l~ 1035 (1114)
+.||+..+++.|.+++..++. ...+++|++.++||++..+|+.+ +++++++.|+..||..+|.+|+..++.+||
T Consensus 705 ~~p~~~~il~~L~~~l~~~~~----~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~ 780 (852)
T 4fdd_A 705 MQPYIPMVLHQLVEIINRPNT----PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGIC 780 (852)
T ss_dssp GGGGTHHHHHHHHHHHTCSSC----CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCC----CchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 999999999999999986542 36899999999999999988765 589999999999999999999999999999
Q ss_pred HHHhhcCCcccCcCcCchhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhhC
Q 001249 1036 SMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSILS 1114 (1114)
Q Consensus 1036 ~l~~~~~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1114 (1114)
.++..+++.+++ .+. .|+++...+...+.+++..+.+++.++++.+|+.+|++++++||++.|++|++.|+
T Consensus 781 ~li~~~p~~~~~-------~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 851 (852)
T 4fdd_A 781 TMISVNPSGVIQ-------DFI-FFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYG 851 (852)
T ss_dssp HHHHHCGGGTGG-------GHH-HHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTSC
T ss_pred HHHHhChHhHHH-------HHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCchhHHHHHHhCCHHHHHHHHHHhC
Confidence 999876654433 333 44444544554578999999999999999999877999999999999999999885
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.9e-56 Score=566.55 Aligned_cols=799 Identities=17% Similarity=0.257 Sum_probs=652.6
Q ss_pred CChHHHHHHHHHH-cCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccC-CCHHHHHHHHHHHHHhcccCC-------
Q 001249 19 PDSAPFETLISHL-MSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD------- 89 (1114)
Q Consensus 19 ~~~~~l~~ll~~~-~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~-~~~~~R~~A~~~Lk~~l~~~~------- 89 (1114)
||++++.++|+++ +|||++.|++||++|+++++++++.|...|++++.++ .++++|++|+++||+.+.++|
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHH
Confidence 8899999999999 9999999999999999998754556788999999874 689999999999999998763
Q ss_pred CCcccC-CCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC-ChhhHHHHHHHH
Q 001249 90 SFLWPR-LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIF 167 (1114)
Q Consensus 90 ~~~w~~-l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~-~~~~r~~al~~l 167 (1114)
...|.. ++++.+..+|+.+++.+.+ +++.+|+.++.+++.|++.++|.+.||+++|.+.+.+.++ ++..|++++.++
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l 159 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred HHhHhhhCCHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 134676 9999999999999999997 5788999999999999999988669999999999999998 999999999999
Q ss_pred HHhhhhhhhh---hhhhHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC
Q 001249 168 AQLSQYIGDT---LTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (1114)
Q Consensus 168 ~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~ 243 (1114)
+.+++..+.. +.++.+.+++.+..++.++ .+..||..|++++..++.++....... ...+.+++.+...++++
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~---~~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE---GERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSH---HHHHHHHHHHHHHHTCS
T ss_pred HHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccCh---hHHHHHHHHHHHHhcCC
Confidence 9999987655 5678999999999999885 268999999999999887653111100 11345677777778888
Q ss_pred CHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhcc----------chhh
Q 001249 244 NEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA----------PGMM 312 (1114)
Q Consensus 244 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~----------~~~~ 312 (1114)
++.+|..++.+|..+++.++..+.+|+. .+++.++..+. +.++++|..++++|..+++..... |.+.
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 314 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK--SPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQS 314 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhh
Confidence 9999999999999999999988999999 99998888775 457899999999999998852100 0000
Q ss_pred h-cchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCCh
Q 001249 313 R-KLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEW 391 (1114)
Q Consensus 313 ~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~ 391 (1114)
. ...+++..++|.++..|.+.+++ ++++++..+..+..+++.++..+| +.+++.+++.+.+.+++++|
T Consensus 315 ~~~~~~~~~~il~~ll~~l~~~~~d----------~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~ 383 (861)
T 2bpt_A 315 YNFALSSIKDVVPNLLNLLTRQNED----------PEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNW 383 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc----------cccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCCh
Confidence 0 12346688899999888754321 122345667789999999999998 78899999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhH-HhhhhhhhHHHHHhhc
Q 001249 392 QKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAM 469 (1114)
Q Consensus 392 ~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l 469 (1114)
+.|++|+.+++.+++++. +.+.++++.+++.+++.+.|+++.||.++++++++++..+++.+ ...+++.++|.+++.+
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l 463 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL 463 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh
Confidence 999999999999999985 77888999999999999999999999999999999999887643 2468999999999999
Q ss_pred cCCCChhHHHHHHHHHHHhhhcCC---cccccCchHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhhhhhhhhhHhh
Q 001249 470 DDFQNPRVQAHAASAVLNFSENCT---PEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYDA 544 (1114)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~---~~~l~~~l~~il~~L~~~l~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~~~ 544 (1114)
.+ + +++|..||+++..+++.++ +..+.||++.+++.|...+++.+ ..+|..++.+++.++...+..+.+|++.
T Consensus 464 ~~-~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~ 541 (861)
T 2bpt_A 464 QD-H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS 541 (861)
T ss_dssp TS-C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred cc-C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHH
Confidence 88 5 9999999999999999865 35678999999999999998543 7899999999999999999889999999
Q ss_pred hhHHHHHHHhhcc-------C----ccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCC-chhhH
Q 001249 545 VMPFLKAILVNAT-------D----KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDD-PTTSY 612 (1114)
Q Consensus 545 i~~~L~~~l~~~~-------~----~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~-~~~~~ 612 (1114)
++|.+.+.+.... + +....+|..++++++.++..+| ..+.||.+.+++.+....... +. .++..
T Consensus 542 l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~---~~~~v~~~ 617 (861)
T 2bpt_A 542 ISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP-SSVEPVADMLMGLFFRLLEKK---DSAFIEDD 617 (861)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHHHHST---TGGGTHHH
T ss_pred HHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHccC---CCCcHHHH
Confidence 9999998887530 1 2244578889999999999999 578999999999988865532 12 68899
Q ss_pred HHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHH
Q 001249 613 MLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATAC 692 (1114)
Q Consensus 613 ~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~ 692 (1114)
++.+++.++...|.+|.||++.++|.+++.+..+ + ...+..|+
T Consensus 618 ~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~-~------------------------------------~~vr~~a~ 660 (861)
T 2bpt_A 618 VFYAISALAASLGKGFEKYLETFSPYLLKALNQV-D------------------------------------SPVSITAV 660 (861)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCT-T------------------------------------SHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc-c------------------------------------HHHHHHHH
Confidence 9999999999999999999999999999998321 0 02356788
Q ss_pred HHHHHHHHHhhhhccccHHHHHHHhhhccccc-CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHH
Q 001249 693 NMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPA 771 (1114)
Q Consensus 693 ~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 771 (1114)
.+++.++..++..+.||++.+++.+...+.+. .+.++|..++.+++.++..... .+.+++..++|.
T Consensus 661 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~-------------~~~~~l~~~l~~ 727 (861)
T 2bpt_A 661 GFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA-------------DFIPYLNDIMAL 727 (861)
T ss_dssp HHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHHH
T ss_pred HHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh-------------hHHHHHHHHHHH
Confidence 89999999999999999999999999988764 2478999999999999876521 245566666666
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhH
Q 001249 772 LVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENE 851 (1114)
Q Consensus 772 l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~ 851 (1114)
+++.+...++. + |+++ .+
T Consensus 728 l~~~~~~~~~~------------------------------------------------------~-d~d~-------~~ 745 (861)
T 2bpt_A 728 CVAAQNTKPEN------------------------------------------------------G-TLEA-------LD 745 (861)
T ss_dssp HHHHHTCCCSS------------------------------------------------------S-SHHH-------HH
T ss_pred HHHHHhcCCCC------------------------------------------------------C-ChHH-------HH
Confidence 66554321100 0 1110 01
Q ss_pred hHHHHHHHHHHHHHHHHHHhh---hchhhhHHHHHHhHhhhhcCC--C-CHHHHHHHHHHHHHHHhHh-hhhhhhhhH-h
Q 001249 852 QEEEVFDQVGEILGTLIKTFK---AAFLPFFDELSSYLTPMWGKD--K-TAEERRIAICIFDDVAEQC-REAALKYYE-T 923 (1114)
Q Consensus 852 ~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~l~~~--~-~~~~r~~a~~~l~~~~~~~-~~~~~~~~~-~ 923 (1114)
....++.++.++++.++...| ..+.||+..+++.+...+.+. . +...|..|+.+++.++..+ |+.+.+|++ .
T Consensus 746 ~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~ 825 (861)
T 2bpt_A 746 YQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQD 825 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcH
Confidence 123466677888888888777 568889888888887776431 1 6778999999999999999 888888999 9
Q ss_pred HHHHHHHhcc---CCChhHHhhhhHHHHHHHh
Q 001249 924 YLPFLLEACN---DENQDVRQAAVYGLGVCAE 952 (1114)
Q Consensus 924 i~~~ll~~l~---~~~~~vr~~a~~~lg~l~~ 952 (1114)
++|.+++.+. +.+..+|.+|.|++|.+.+
T Consensus 826 ~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 826 WVIDYIKRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 9999999887 4667899999999999976
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=4.4e-54 Score=545.95 Aligned_cols=800 Identities=17% Similarity=0.232 Sum_probs=637.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccC-CCHHHHHHHHHHHHHhcccCC-------CCccc
Q 001249 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (1114)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~-~~~~~R~~A~~~Lk~~l~~~~-------~~~w~ 94 (1114)
++.++|+.++|+|+++|++|+++|+++.+++++.+...|++++.++ .++.+|++|+++||+.+...+ ...|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhc
Confidence 6889999999999999999999999998744456779999999874 679999999999999886431 23599
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC--ChhhHHHHHHHHHHhhh
Q 001249 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQ 172 (1114)
Q Consensus 95 ~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~--~~~~r~~al~~l~~l~~ 172 (1114)
.++++.+..+|..+++.+.+ +++.+ +.++.+++.+++.+++.+.||+++|.+.+.+.++ ++.+|++++.+++.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~-~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGT-ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTT-CCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC-CcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 46667 9999999999999888789999999999999998 89999999999999998
Q ss_pred hh-hhhhhhhHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHH
Q 001249 173 YI-GDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250 (1114)
Q Consensus 173 ~~-~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~ 250 (1114)
.. ++.+.++.+.+++.+.+++.++. +..+|..|++++..++.++........ ..+.+++.+...+++.++++|..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~---~~~~il~~l~~~~~~~~~~vr~~ 236 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES---ERHFIMQVVCEATQCPDTRVRVA 236 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHH---HHHHHHHHHHHHTTCSSHHHHHH
T ss_pred hcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHcCCCCHHHHHH
Confidence 76 45567789999999999998852 689999999999998876531111111 11246667777777888999999
Q ss_pred HHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhc-------------cc--hhhhc
Q 001249 251 ALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER-------------AP--GMMRK 314 (1114)
Q Consensus 251 ~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~-------------~~--~~~~~ 314 (1114)
++++|..+++.+++.+.+|+. .+++.++.... +.++.+|..++++|..+++.... .| .....
T Consensus 237 a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (876)
T 1qgr_A 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMK--SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (876)
T ss_dssp HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHH
Confidence 999999999999999999999 99999988764 45788999999999999874200 00 00011
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHH
Q 001249 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1114)
Q Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 394 (1114)
..++++.++|.+++.|...++ |+|++++..+.++..++..++..+| +.+++.+++.+...+.+++|++|
T Consensus 315 ~~~~~~~ll~~ll~~l~~~~~----------d~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~~~~~~r 383 (876)
T 1qgr_A 315 AKGALQYLVPILTQTLTKQDE----------NDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYR 383 (876)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS----------SCCTTCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHhHHHHHHhhcccc----------cccccccHHHHHHHHHHHHHHHHCc-HhhHHHHHHHHHHHccCCChHHH
Confidence 223567888988888865432 1123356777889999999999998 78899999999999999999999
Q ss_pred HHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhH-HhhhhhhhHHHHHhhccCC
Q 001249 395 HAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDF 472 (1114)
Q Consensus 395 ~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~ 472 (1114)
++|+.+++.+++++. +.+.++++.+++.++..++|+++.||.+|+++++++++.+++.+ ..++++.+++.++..+.+
T Consensus 384 ~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~- 462 (876)
T 1qgr_A 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA- 462 (876)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-
Confidence 999999999999887 66778999999999999999999999999999999999887643 257899999999999998
Q ss_pred CChhHHHHHHHHHHHhhhcCC-------------cccccCchHHHHHHHHHHhhcC---ChhHHHHHHHHHHHHHHhhhh
Q 001249 473 QNPRVQAHAASAVLNFSENCT-------------PEILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQE 536 (1114)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~-------------~~~l~~~l~~il~~L~~~l~~~---~~~v~~~al~~l~~l~~~~~~ 536 (1114)
+ ++||..++++|..+++.++ .+.+.||++.+++.|...+.+. +..+|..++.+++.++...+.
T Consensus 463 ~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 463 E-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred C-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence 4 8999999999999998753 2457899999999999999875 467999999999999999998
Q ss_pred hhhhhHhhhhHHHHHHHhhc--------cCcc---chhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCC
Q 001249 537 HFQKYYDAVMPFLKAILVNA--------TDKS---NRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMET 605 (1114)
Q Consensus 537 ~~~~~~~~i~~~L~~~l~~~--------~~~~---~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~ 605 (1114)
.+.+|++.++|.+...+... .+.+ ...+|..++.+++.++..+|.+.+.||++.+++.++.+..... .
T Consensus 542 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~ 620 (876)
T 1qgr_A 542 DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA-G 620 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhcc-C
Confidence 88899999999999888752 1111 1456788899999999999856789999999999988665321 1
Q ss_pred CCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhH
Q 001249 606 DDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVL 685 (1114)
Q Consensus 606 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 685 (1114)
...++..++.+++.++...|..|.||++.++|.+...+.... ..
T Consensus 621 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~------------------------------------~~ 664 (876)
T 1qgr_A 621 SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYA------------------------------------EY 664 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCT------------------------------------TH
T ss_pred CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcc------------------------------------hH
Confidence 135788899999999999999999999999999999884210 01
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhccccc-CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Q 001249 686 EEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQL 764 (1114)
Q Consensus 686 ~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1114)
..|..|+.+++.++..++..+.||++.+++.+...+... .+.++|..++.+++.++..... .+..+
T Consensus 665 ~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~-------------~~~~~ 731 (876)
T 1qgr_A 665 QVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG-------------EFKKY 731 (876)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG-------------GGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhch-------------hHHHH
Confidence 246678899999999999999999999999999998752 3678999999999988765411 12223
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhh
Q 001249 765 SDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESE 844 (1114)
Q Consensus 765 ~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~ 844 (1114)
+..++|.+.+.+.... +.+ |++.
T Consensus 732 l~~~~~~l~~~~~~~~------------------------------------------------------~~~-d~~~-- 754 (876)
T 1qgr_A 732 LEVVLNTLQQASQAQV------------------------------------------------------DKS-DYDM-- 754 (876)
T ss_dssp HHHHHHHHHHHHTCCC------------------------------------------------------CTT-CHHH--
T ss_pred HHHHHHHHHHHHhccC------------------------------------------------------CCC-ChHH--
Confidence 3334443333221100 000 1111
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHhhh----------chhhhHHHHHHhHhhhhcCCC-CHHHHHHHHHHHHHHHhHh
Q 001249 845 LIKEENEQEEEVFDQVGEILGTLIKTFKA----------AFLPFFDELSSYLTPMWGKDK-TAEERRIAICIFDDVAEQC 913 (1114)
Q Consensus 845 ~~~e~~~~~~~~~~~~~~~l~~l~~~~~~----------~~~~~~~~l~~~l~~~l~~~~-~~~~r~~a~~~l~~~~~~~ 913 (1114)
.+....++..+.+++..+++..|. .+.||+..+++.+.....+.. +...|..|+.++++++++.
T Consensus 755 -----~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~ 829 (876)
T 1qgr_A 755 -----VDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAF 829 (876)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 112345677778888888877663 577898888887766653332 6789999999999999999
Q ss_pred hh-hhhhh-hHhHHHHHHH-hccCCChhHHhhhhHHHHHHHhhc
Q 001249 914 RE-AALKY-YETYLPFLLE-ACNDENQDVRQAAVYGLGVCAEFG 954 (1114)
Q Consensus 914 ~~-~~~~~-~~~i~~~ll~-~l~~~~~~vr~~a~~~lg~l~~~~ 954 (1114)
|. .+.+| .+.+++.++. ++.++++.+|++|+|++|.+++..
T Consensus 830 ~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 830 GKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp CTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHHhh
Confidence 88 77787 6789999998 899999999999999999998754
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=8.8e-53 Score=549.16 Aligned_cols=948 Identities=13% Similarity=0.158 Sum_probs=699.9
Q ss_pred CCChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcC--------chHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCC
Q 001249 18 GPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQD--------PDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD 89 (1114)
Q Consensus 18 ~~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~--------p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~ 89 (1114)
+.++.++.++|+.+.|+|++.|.+|+..|.+..+.. +..++..|++.+. +.++.+|+.|+..|.+++..
T Consensus 2 ~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~-- 78 (1230)
T 1u6g_C 2 ASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK-- 78 (1230)
T ss_dssp --CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT--
T ss_pred CchHhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh--
Confidence 456789999999999999999999999887754321 1245666777775 67899999999999997643
Q ss_pred CCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC--------CchhhHHHHHHhhc-CCChhhH
Q 001249 90 SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN--------GWPELLPFMFQCVS-SDSVKLQ 160 (1114)
Q Consensus 90 ~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~--------~w~~ll~~l~~~~~-~~~~~~r 160 (1114)
+++.....++..+++.+.+ ++..+|..++.+++.++....+.. .|++++|.+.+.+. ++++..|
T Consensus 79 ------~~~~~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~ 151 (1230)
T 1u6g_C 79 ------VKEYQVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQ 151 (1230)
T ss_dssp ------SCHHHHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred ------CCHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHH
Confidence 5667888999999999987 577899999999999998755421 59999999999998 5889999
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHH
Q 001249 161 ESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL 240 (1114)
Q Consensus 161 ~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~ 240 (1114)
+.++.++..+++..++.+.++.+.+++.+...+.++ +..||..|+.+++.++...+. ..+..++|.+++.+..
T Consensus 152 ~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~vR~~a~~al~~l~~~~~~----~~~~~~l~~l~~~L~~-- 224 (1230)
T 1u6g_C 152 LEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTIIALGHLVMSCGN----IVFVDLIEHLLSELSK-- 224 (1230)
T ss_dssp HHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHhcc--
Confidence 999999999999888888889999999999999997 899999999999999987632 2345567777776654
Q ss_pred hCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHH
Q 001249 241 NNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFIN 320 (1114)
Q Consensus 241 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 320 (1114)
..++..|..++++++.++...+..+.+|++.+++.++..+.+ .++++|..+++++..+++. .+ ..+.++++
T Consensus 225 -~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d--~~~~vR~~a~~~l~~l~~~---~~---~~~~~~l~ 295 (1230)
T 1u6g_C 225 -NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNV--DDDELREYCIQAFESFVRR---CP---KEVYPHVS 295 (1230)
T ss_dssp -TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSS--CCTTTHHHHHHHHHHHHHC---TT---CCCHHHHH
T ss_pred -CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHH---Ch---HHHHHhHH
Confidence 223467788999999999988888899999999999998864 4688999999999999983 22 24567999
Q ss_pred HHHHHHHHhhcCCCC-----Cccccc------CCCCCcc------ccC---CCchhhHHHHHHHHHHHcCC--CcchHHH
Q 001249 321 RLFAILMSMLLDIED-----DPLWHS------AETEDED------AGE---SSNYSVGQECLDRLAIALGG--NTIVPVA 378 (1114)
Q Consensus 321 ~l~~~l~~~l~~~~~-----~~~~~~------~~~~~ed------~~~---~~~~~~a~~~l~~l~~~~~~--~~~~~~l 378 (1114)
.++|.++..+.+..+ +.+|.. .++++++ +++ |..+..|..+++.++...|. ..+++.+
T Consensus 296 ~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l 375 (1230)
T 1u6g_C 296 TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTV 375 (1230)
T ss_dssp HHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTT
T ss_pred HHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 999999988864211 111210 0001000 011 22345688889988876652 2344455
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhh-------------------cHHHHHHhHHHHHHHHHhcCCCCChhHHHHHH
Q 001249 379 SEQLPAYLAAPEWQKHHAALIALAQIAEG-------------------CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (1114)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~-------------------~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 439 (1114)
++.+...+.+.++.+|.+++.+++.+... +...+..+++.+++.+.+.++|+++.+|.+++
T Consensus 376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~ 455 (1230)
T 1u6g_C 376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 455 (1230)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence 66676777888999999999999888763 33456778889999999999999999999999
Q ss_pred HHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCCh--hHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCCh
Q 001249 440 NAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP--RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ 517 (1114)
Q Consensus 440 ~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~--~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~ 517 (1114)
.+++.++..++..+ .+|++.+++.++..+.+ +++ .++..++.++..+++..+++.+.||++.+++.++..+++.+.
T Consensus 456 ~~L~~l~~~~~~~l-~~~l~~ll~~l~~~L~d-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~ 533 (1230)
T 1u6g_C 456 NMLTELVNVLPGAL-TQHIPVLVPGIIFSLND-KSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFY 533 (1230)
T ss_dssp HHHHHHHHHSTTTT-GGGHHHHHHHHHHHTTC-SSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSH
T ss_pred HHHHHHHHHchhhh-HHHHHHHHHHHHHHHcC-CCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccch
Confidence 99999999876666 57899999999999999 654 899999999999998888777889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhh-------hhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHH
Q 001249 518 MVQEGALTALASVADSSQE-------HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQ 590 (1114)
Q Consensus 518 ~v~~~al~~l~~l~~~~~~-------~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~ 590 (1114)
.++..++.+++.++..++. .+.||++.++|.+...+... +....+|..|+.|++.++...| +.+.++++.
T Consensus 534 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~--d~~~~vr~~a~~~lg~L~~~~g-~~~~~~~~~ 610 (1230)
T 1u6g_C 534 KITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA--DIDQEVKERAISCMGQIICNLG-DNLGSDLPN 610 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS--SSCHHHHHHHHHHHHHHHHHTG-GGCCTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhC-chhhhhHHH
Confidence 9999999999999988876 78899999999999988532 2345789999999999999999 557788888
Q ss_pred HHHHHHHHhcCCC-------------------------------------CCCCchhhHHHHHHHHHHHHhccC------
Q 001249 591 VMEVLMSLQGSQM-------------------------------------ETDDPTTSYMLQAWARLCKCLGQD------ 627 (1114)
Q Consensus 591 i~~~l~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~------ 627 (1114)
+++.+........ +.+..+|..++.+++.++...+..
T Consensus 611 ~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v 690 (1230)
T 1u6g_C 611 TLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMI 690 (1230)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHH
Confidence 8777665322110 123346667777777777665532
Q ss_pred ------------------------------------CccchhhhhHHHHHhccCCC--Ccc----------c-cCCCC--
Q 001249 628 ------------------------------------FLPYMSVVMPPLLQSAQLKP--DVT----------I-TSADS-- 656 (1114)
Q Consensus 628 ------------------------------------~~~~l~~i~~~ll~~~~~~~--~~~----------~-~~~~~-- 656 (1114)
+.++.+.+++.++..+.... +.. + ..+..
T Consensus 691 ~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 770 (1230)
T 1u6g_C 691 DAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNL 770 (1230)
T ss_dssp HHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCC
Confidence 22234444444444332110 000 0 00000
Q ss_pred c-cc--------ccCCCC--cccc---hh---------hcCC--------ceeeecc--hhHHHHHHHHHHHHHHHHHhh
Q 001249 657 D-NE--------IEDSDD--DSME---TI---------TLGD--------KRIGIKT--SVLEEKATACNMLCCYADELK 703 (1114)
Q Consensus 657 ~-~~--------~~~~~~--~~~~---~~---------~~~~--------~~~~v~~--~~~~~k~~A~~~l~~~~~~~~ 703 (1114)
. .+ ....++ ...+ .. ..++ ....+++ .....|..++.+++.+....
T Consensus 771 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~- 849 (1230)
T 1u6g_C 771 GYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHI- 849 (1230)
T ss_dssp SHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHS-
T ss_pred CHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccC-
Confidence 0 00 000000 0000 00 0000 0001111 11223455666777665432
Q ss_pred hhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHH
Q 001249 704 EGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTE 783 (1114)
Q Consensus 704 ~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 783 (1114)
.+.++ +++.+.+.+.+.+. +++||.+|+.++|.++... ...++|.+++.+.++ ++
T Consensus 850 -~~~~~-~~l~~~~~~~l~~~-~~~Vr~aAa~aLg~l~~~~--------------------~~~~lp~ll~~l~~~--~~ 904 (1230)
T 1u6g_C 850 -DLSGQ-LELKSVILEAFSSP-SEEVKSAASYALGSISVGN--------------------LPEYLPFVLQEITSQ--PK 904 (1230)
T ss_dssp -CCCSC-THHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHT--------------------HHHHHHHHHHHHHSC--GG
T ss_pred -CCccc-ccHHHHHHHHhCCC-CHHHHHHHHHHhHHHhccC--------------------HHHHHHHHHHHHhcc--ch
Confidence 23342 56778888888875 9999999999999886321 123467777777654 34
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHH
Q 001249 784 ICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEI 863 (1114)
Q Consensus 784 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~ 863 (1114)
.+...+.++.+++...+. +.+.++...+...|..... + .++.++..+++|
T Consensus 905 ~~~~~l~al~e~i~~~~~----~~~~~~~~~i~~~L~~~~~------------~--------------~~~~~r~~~a~~ 954 (1230)
T 1u6g_C 905 RQYLLLHSLKEIISSASV----VGLKPYVENIWALLLKHCE------------C--------------AEEGTRNVVAEC 954 (1230)
T ss_dssp GHHHHHHHHHHHHHSSCS----TTTHHHHHHHHHHHTTCCC------------C--------------SSTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCh----hhHHhhHHHHHHHHHHHhc------------C--------------cchhhHHHHHHH
Confidence 566789999999976443 3344455555554443211 1 112366779999
Q ss_pred HHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCCChhHHhhh
Q 001249 864 LGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAA 943 (1114)
Q Consensus 864 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a 943 (1114)
+|.+++..+..+ +|.+...++ +.++..|..++++++.++..++..+.+|++.+++.+++.++|+++.||++|
T Consensus 955 lg~l~~~~~~~l-------~p~l~~~l~-~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a 1026 (1230)
T 1u6g_C 955 LGKLTLIDPETL-------LPRLKGYLI-SGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVA 1026 (1230)
T ss_dssp HHHHHHSSGGGT-------HHHHTTTSS-SSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHH
T ss_pred HhhhhccChHHH-------HHHHHHHhc-CCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 999998876544 455555553 556778999999999998888877778999999999999999999999999
Q ss_pred hHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCC------------CChhhhhhHHHHHHHHHHHHhhcCCCCCHhhHH
Q 001249 944 VYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNA------------LQPENLMAYDNAVSALGKICQFHRDSIDAAQVV 1011 (1114)
Q Consensus 944 ~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~------------~~~~~~~~~~na~~al~~l~~~~~~~~~~~~~~ 1011 (1114)
+++++.++.+.+..+.+++..+++.|.+.+..+.. +.+++..+|+||..|+++++.++.+.+++.+++
T Consensus 1027 ~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~ 1106 (1230)
T 1u6g_C 1027 LVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFL 1106 (1230)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHH
T ss_pred HHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999988764432 336778999999999999999998888999999
Q ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcC
Q 001249 1012 PAWLNCLPIKGDLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCG 1066 (1114)
Q Consensus 1012 ~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~~~~l~~ 1066 (1114)
+.|+..||. |.+.+..++..+.+|+...++.+++ ++++++..+..+|..
T Consensus 1107 ~~~~~gl~d--~~di~~~~~~~l~~l~~~~~~~~~~----~~~~~~~~~~~~l~~ 1155 (1230)
T 1u6g_C 1107 NHVEDGLKD--HYDIKMLTFLMLVRLSTLCPSAVLQ----RLDRLVEPLRATCTT 1155 (1230)
T ss_dssp HHHHHTTSS--CHHHHHHHHHHHHHHHHSCCHHHHT----TTTTTHHHHHHHHHC
T ss_pred HHHHcccCc--hHHHHHHHHHHHHHHHhcCHHHHHH----HHHHHHHHHHHHHhh
Confidence 999999997 5778899999999999877776765 799999999999873
No 5
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=1.5e-44 Score=456.42 Aligned_cols=688 Identities=12% Similarity=0.152 Sum_probs=500.2
Q ss_pred ChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCccc----
Q 001249 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP---- 94 (1114)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~---- 94 (1114)
|.+++.++|++++|||++.| ||++|+++++ +|+ |...|++++.+ +.+.++|++|+++|||.+.++ |.
T Consensus 3 d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~-~p~-~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~----w~~~~~ 74 (960)
T 1wa5_C 3 DLETVAKFLAESVIASTAKT--SERNLRQLET-QDG-FGLTLLHVIASTNLPLSTRLAGALFFKNFIKRK----WVDENG 74 (960)
T ss_dssp HHHHHHHHHHHTTSGGGHHH--HHHHHHHHHT-STT-HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH----SBCSSS
T ss_pred cHHHHHHHHHHhcCCCHHHH--HHHHHHHhhc-CCC-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc----CCCccc
Confidence 56899999999999999999 9999999987 787 56899999976 567899999999999999987 86
Q ss_pred --CCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 001249 95 --RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1114)
Q Consensus 95 --~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~ 172 (1114)
.++++.+..||+.+++.+.++ ++.+|++++.+|+.|+++++| +.||++++.+.+.+++++...+++++.++..+++
T Consensus 75 ~~~l~~~~k~~ik~~ll~~l~~~-~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 75 NHLLPANNVELIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp CBSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 799999999999999999985 589999999999999999999 7999999999999999888999999999999998
Q ss_pred hhhh-----h--------hhhhHHHHHHHHHH---hhcCCCC--hHHH------HHHHHHHHHHHHhcCCcchHhHHHhh
Q 001249 173 YIGD-----T--------LTPHLKHLHAVFLN---CLTNSNN--PDVK------IAALNAVINFIQCLTSSADRDRFQDL 228 (1114)
Q Consensus 173 ~~~~-----~--------~~~~~~~l~~~l~~---~l~~~~~--~~vr------~~a~~~l~~l~~~~~~~~~~~~~~~l 228 (1114)
.... . +..+.+.+++.+.. +++++.+ ..+| ..+++++..+...--.....+.+..+
T Consensus 153 ~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~ 232 (960)
T 1wa5_C 153 RWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVG 232 (960)
T ss_dssp GGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHH
T ss_pred HHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 6532 1 12233333444432 3554311 1233 33455554433211011111223444
Q ss_pred HHHHHHHHHHHHh--CCC---------HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhc---cCCcchhHHHHH
Q 001249 229 LPLMMRTLTESLN--NGN---------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE---AESLEEGTRHLA 294 (1114)
Q Consensus 229 ~p~ll~~l~~~~~--~~~---------~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~---~~~~~~~vr~~a 294 (1114)
++.+++.+..... ..+ +.+++.+++++..+.+.+++.|.+|++.+++.+++.+. +...++.++..+
T Consensus 233 ~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 312 (960)
T 1wa5_C 233 MGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKS 312 (960)
T ss_dssp HHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHH
T ss_pred HHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHH
Confidence 4444444321000 001 24578899999999999999999999999999988774 234567899999
Q ss_pred HHHHHHHHHhhhccchhhhcchhhHHHHH-HHHHHhhcCCC-CCcccccCCCC-----CccccCCCchhhHHHHHHHHHH
Q 001249 295 IEFVITLAEARERAPGMMRKLPQFINRLF-AILMSMLLDIE-DDPLWHSAETE-----DEDAGESSNYSVGQECLDRLAI 367 (1114)
Q Consensus 295 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~-~~l~~~l~~~~-~~~~~~~~~~~-----~ed~~~~~~~~~a~~~l~~l~~ 367 (1114)
++||.++++..... ... +..+++..++ +.++..|...+ |.+.|..++++ .|+++.++.+.+|..+++.++.
T Consensus 313 l~fl~~~~~~~~~~-~~~-~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~ 390 (960)
T 1wa5_C 313 LSFLTAVTRIPKYF-EIF-NNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKE 390 (960)
T ss_dssp HHHHHHHHTSHHHH-GGG-CSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHhHH-HHH-cCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHH
Confidence 99999998742111 111 1237899999 78899887554 33457644321 1123345778899999999999
Q ss_pred HcCCCcchHHHHHHHHHhhC------CCChhHHHHHHHHHHHHHhh---cHHHHHH-----hHHHH-HHHHHhcCCCC--
Q 001249 368 ALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEG---CAKVMVK-----NLEQV-LSMVLNSFRDP-- 430 (1114)
Q Consensus 368 ~~~~~~~~~~l~~~l~~~l~------~~~~~~r~aal~~l~~l~~~---~~~~~~~-----~l~~i-~~~l~~~l~d~-- 430 (1114)
.+| +.+++.+++++.+.++ +++|+.|+||++++|.++++ +...... .+..+ ...+++.+.|+
T Consensus 391 ~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~ 469 (960)
T 1wa5_C 391 KNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNI 469 (960)
T ss_dssp HCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSC
T ss_pred Hcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCC
Confidence 998 7899999999988876 78999999999999999875 2211111 33333 34556666777
Q ss_pred -ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC----------CcccccC
Q 001249 431 -HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC----------TPEILTP 499 (1114)
Q Consensus 431 -~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~----------~~~~l~~ 499 (1114)
+|.||.+|+|++|++++++. ..++..+++.+++.+.+ +++.||.+||.||..|++.. ..+.+.|
T Consensus 470 ~~p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p 544 (960)
T 1wa5_C 470 PHIILRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQT-DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544 (960)
T ss_dssp SCHHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred CCceehHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHhcccccccccccccHHHhhh
Confidence 99999999999999999874 35789999999999998 78999999999999999852 2456889
Q ss_pred chHHHHHHHHHHhhcCC-----hhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhc-cCccchhhhHHHHHHHH
Q 001249 500 YLDGIVSKLLVLLQNGK-----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-TDKSNRMLRAKSMECIS 573 (1114)
Q Consensus 500 ~l~~il~~L~~~l~~~~-----~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~-~~~~~~~lr~~a~~~l~ 573 (1114)
|++.+++.|+.+++... ....+.++.+++.++...++.+.||++.+++.|...+... .+++...++..+++|++
T Consensus 545 ~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~ 624 (960)
T 1wa5_C 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIG 624 (960)
T ss_dssp THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 99999999999998751 1244689999999999999999999999999999988764 34455667888999999
Q ss_pred HHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHH--HhccCCCCccc
Q 001249 574 LVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL--QSAQLKPDVTI 651 (1114)
Q Consensus 574 ~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll--~~~~~~~~~~~ 651 (1114)
.++++.+++.+.++.+.+++.+..+..... ....++++..++.+.... +.|.+|+..++|.++ ..+...
T Consensus 625 ~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~---~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~----- 695 (960)
T 1wa5_C 625 AILNYTQRQNLPLLVDSMMPTFLTVFSEDI---QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELK----- 695 (960)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHHHHHHHTTC---TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCT-----
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHHhhh---HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCC-----
Confidence 999998888899999999998888554322 236778888888888776 789999999999887 444221
Q ss_pred cCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHH
Q 001249 652 TSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRK 731 (1114)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~ 731 (1114)
+.+ ...+.+|..+....+..|.+ ++.++..+.+++.+. . .+.
T Consensus 696 -------------------------------~~~---~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~-~--~~~ 737 (960)
T 1wa5_C 696 -------------------------------GNI---PAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASK-A--YEV 737 (960)
T ss_dssp -------------------------------TTH---HHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCT-T--THH
T ss_pred -------------------------------CCc---hhHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCC-c--ccc
Confidence 001 12344666666655555544 344444444444432 1 237
Q ss_pred HHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHH
Q 001249 732 AAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEI 784 (1114)
Q Consensus 732 ~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 784 (1114)
.++.+++.++..+. ...+.+++..+++.++..+......+.
T Consensus 738 ~a~~ll~~i~~~~~------------~~~~~~yl~~i~~~l~~~l~~~~~~~~ 778 (960)
T 1wa5_C 738 HGFDLLEHIMLLID------------MNRLRPYIKQIAVLLLQRLQNSKTERY 778 (960)
T ss_dssp HHHHHHHHHHHHSC------------HHHHGGGHHHHHHHHHHGGGSSCCHHH
T ss_pred hHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHHHHHhhCCcHhH
Confidence 78888887776542 112445666677777777765543443
No 6
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=5.5e-42 Score=436.99 Aligned_cols=711 Identities=17% Similarity=0.207 Sum_probs=523.7
Q ss_pred CChHHHHHHHHH-HcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCC
Q 001249 19 PDSAPFETLISH-LMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1114)
Q Consensus 19 ~~~~~l~~ll~~-~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~ 97 (1114)
++.+++.++|+. ..++|++.|++|+++|+++++ +|+.+ ..+.+++.++.++++|++|+++||+.+.++ |..++
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p~~~-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~----w~~l~ 94 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQV-SPQAW-HFSWQLLQPDKVPEIQYFGASALHIKISRY----WSDIP 94 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-STTHH-HHHHHHTSTTSCHHHHHHHHHHHHHHHHHC----GGGSC
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CHHHH-HHHHHHhcCCCchHHHHHHHHHHHHHHHhC----HHhCC
Confidence 468899999999 556899999999999999999 79864 788889988889999999999999999987 99999
Q ss_pred HHHHHHHHHHHHHHHhhch--hhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcC-----CChhhHHHHHHHHHHh
Q 001249 98 LHTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS-----DSVKLQESAFLIFAQL 170 (1114)
Q Consensus 98 ~~~~~~i~~~ll~~l~~e~--~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~-----~~~~~r~~al~~l~~l 170 (1114)
++.+..+|+.+++.+...+ ++.||++++.+++.|+++++| ..||++++.+.+.+++ +++..++.++.+|..+
T Consensus 95 ~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l 173 (963)
T 2x19_B 95 TDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVL 173 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-cccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhC
Confidence 9999999999999998742 588999999999999999998 6699999999999876 3667889999999999
Q ss_pred hhhhh-------------hhhhhhHHHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHH-----------------------
Q 001249 171 SQYIG-------------DTLTPHLKHLHAVFLNCLTNSNNP-DVKIAALNAVINFI----------------------- 213 (1114)
Q Consensus 171 ~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~~~-~vr~~a~~~l~~l~----------------------- 213 (1114)
++++. +.+..+++.+++.+.+.+.+..+. .++..+++|+..++
T Consensus 174 ~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~ 253 (963)
T 2x19_B 174 PEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDS 253 (963)
T ss_dssp HHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTST
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCc
Confidence 97541 223456777888887777654222 35555666664433
Q ss_pred --------------HhcCCcchHhHHHhhHHHHHHHH---HHHHhCCCHHHHHHHHHHHHHHHccchHHHH------HHH
Q 001249 214 --------------QCLTSSADRDRFQDLLPLMMRTL---TESLNNGNEATAQEALELLIELAGTEPRFLR------RQL 270 (1114)
Q Consensus 214 --------------~~~~~~~~~~~~~~l~p~ll~~l---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~------~~~ 270 (1114)
...........+..+++.++..+ ......++.+.....++++..+++.++..+. +++
T Consensus 254 ~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 333 (963)
T 2x19_B 254 ELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF 333 (963)
T ss_dssp TTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred hHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH
Confidence 21100101123334444444332 2223445677788889999999888777765 677
Q ss_pred HHHHHHHHHHhccC---CcchhHHHHHHHHHHHHHHhhhc-----cchhhhcchhhHHHHHHHHHHhhcCCCCCcccccC
Q 001249 271 VDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEARER-----APGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA 342 (1114)
Q Consensus 271 ~~l~~~ll~~~~~~---~~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 342 (1114)
..+++.++.+...+ ..+++++..++++|..+++.... .+.......+++.++++.++..|.+.+++ +|...
T Consensus 334 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~-~~~~~ 412 (963)
T 2x19_B 334 LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDE-EYGFW 412 (963)
T ss_dssp HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH-HHHTS
T ss_pred HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcc-cccCC
Confidence 78888888877642 24567888999999999883110 02222334578888999999988754432 23221
Q ss_pred CCCCccccCC-CchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhh----CCCChhHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001249 343 ETEDEDAGES-SNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL----AAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1114)
Q Consensus 343 ~~~~ed~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 417 (1114)
++ ||+++. ..++.+.++++.++...| +.+++.+++.+.+.+ ++.+|+.|+++++++|.+++++.+...++++
T Consensus 413 ~~--de~~~~~~~r~~~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~ 489 (963)
T 2x19_B 413 SS--DEKEQFRIYRVDISDTLMYVYEMLG-AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVP 489 (963)
T ss_dssp CH--HHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH
T ss_pred Ch--hHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 11 111122 224567889999998887 778899999998888 6789999999999999999998754446677
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc
Q 001249 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1114)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1114)
.+++.+. .+.++++.||.++++++|++++++.... ++++.+++.++..+.+ ++|+..||.++..+++.++. .+
T Consensus 490 ~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~-~l 562 (963)
T 2x19_B 490 GLIGLIP-RISISNVQLADTVMFTIGALSEWLADHP--VMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKY-DL 562 (963)
T ss_dssp HHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCH--HHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGG-GC
T ss_pred HHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHH-HH
Confidence 8888544 5566799999999999999999887643 7899999999999965 78999999999999998875 47
Q ss_pred cCchHHHHHHHHHHhhc--CChhHHHHHHHHHHHHHHhhh-hhhhhhHhhhhHHHHHHHhhc----cCccchhhhHHHHH
Q 001249 498 TPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVADSSQ-EHFQKYYDAVMPFLKAILVNA----TDKSNRMLRAKSME 570 (1114)
Q Consensus 498 ~~~l~~il~~L~~~l~~--~~~~v~~~al~~l~~l~~~~~-~~~~~~~~~i~~~L~~~l~~~----~~~~~~~lr~~a~~ 570 (1114)
.||++.+++.+..+++. .+...+..++.+++.++...+ +.+.+|++.+++.+...+... .+++....+...++
T Consensus 563 ~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~ 642 (963)
T 2x19_B 563 PPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILG 642 (963)
T ss_dssp TTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 89999999999999986 357889999999999998886 788999999999998887642 12333445567899
Q ss_pred HHHHHHHHhch---------------------hhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCc
Q 001249 571 CISLVGMAVGK---------------------DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFL 629 (1114)
Q Consensus 571 ~l~~i~~~~~~---------------------~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 629 (1114)
|++.++++++. +.+.++...+++.+..+..... .+..+.+.+..+++.++..+|+++.
T Consensus 643 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~~ 721 (963)
T 2x19_B 643 LLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDFA 721 (963)
T ss_dssp HHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTTG
T ss_pred HHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhccccc
Confidence 99999998862 2255677788887776443211 2335788888999999999999999
Q ss_pred cchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHh--hhhcc
Q 001249 630 PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADEL--KEGFF 707 (1114)
Q Consensus 630 ~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~--~~~~~ 707 (1114)
||+|.+++.++......+. ...+.+++.++..+ +..+.
T Consensus 722 ~~l~~~~~~l~~~~~~~~~----------------------------------------~~~l~l~~~li~~f~~~~~~~ 761 (963)
T 2x19_B 722 PMVPQLCEMLGRMYSTIPQ----------------------------------------ASALDLTRQLVHIFAHEPAHF 761 (963)
T ss_dssp GGHHHHHHHHHHHHHHSCC----------------------------------------HHHHHHHHHHHHHHTTCTTTC
T ss_pred ccHHHHHHHHHHHHHcCCc----------------------------------------cHHHHHHHHHHHHhCCCcchH
Confidence 9999999988876632100 11344566666633 33355
Q ss_pred ccHHHHHHH----hhhccccc--CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHHHHHHHHccCC
Q 001249 708 PWIDQVAPT----LVPLLKFY--FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQL-SDFIIPALVEALHKEP 780 (1114)
Q Consensus 708 p~~~~~~~~----l~~~l~~~--~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~~~~~~ 780 (1114)
|++.++++. +++.+... .++++|......+..++..+...+-. ... +..+++.++..++ .+
T Consensus 762 ~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~~l~-~~ 829 (963)
T 2x19_B 762 PPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-----------ERLDVKAVFQCAVLALK-FP 829 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-----------TTSCHHHHHHHHHHHTT-CS
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-----------CcccHHHHHHHHHHHcC-CC
Confidence 565554443 33333321 25899999999999988764322110 111 4455666666665 57
Q ss_pred cHHHHHHHHHHHHHHHHHhC
Q 001249 781 DTEICASMLDSLNECIQISG 800 (1114)
Q Consensus 781 ~~~~~~~~l~~l~~~l~~~~ 800 (1114)
++++...++..+.+++...+
T Consensus 830 ~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 830 EAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp CHHHHHHHHHHHHHHGGGTT
T ss_pred CHHHHHHHHHHHHHHHhcCC
Confidence 88888889999988887654
No 7
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-42 Score=438.08 Aligned_cols=767 Identities=13% Similarity=0.158 Sum_probs=511.6
Q ss_pred CChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
+|.+++.++++.+++||++.|++|+++|+++++ +|+.+ .++.++|..+.++++|++|+++||+.+.++ |..+++
T Consensus 4 ~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~-~p~~w-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~----w~~l~~ 77 (971)
T 2x1g_F 4 IDIARLEEAVVSFYRSNSQNQAITHEWLTDAEA-SPQAW-QFSWQLMQLGKSQEVQFFGAITLHSKLMKH----WHEVPP 77 (971)
T ss_dssp -------CTHHHHHTSTTTC----CHHHHHTTT-STHHH-HHHHHHTCTTSCHHHHHHHHHHHHHHHHHC----GGGCCG
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CHHHH-HHHHHHHhcCCcHHHHHHHHHHHHHHHHcc----HhhCCH
Confidence 678899999999999999999999999999999 79864 788999988889999999999999999987 999999
Q ss_pred HHHHHHHHHHHHHHhhch--hhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC------ChhhHHHHHHHHHHh
Q 001249 99 HTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD------SVKLQESAFLIFAQL 170 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~--~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~------~~~~r~~al~~l~~l 170 (1114)
+.+..+|+.+++.+.... .+.||++++.+++.|+++++| .||++++.+.+.++++ ++..++.++.+|..+
T Consensus 78 ~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l 155 (971)
T 2x1g_F 78 ENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAI 155 (971)
T ss_dssp GGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHh
Confidence 999999999999998742 578999999999999999998 8999999999998775 567899999999999
Q ss_pred hhhhh------------hhhhhhHHHHHHHHHHhhcCCCCh-------HHHHHHHHHHHHHHHh--cCCc----------
Q 001249 171 SQYIG------------DTLTPHLKHLHAVFLNCLTNSNNP-------DVKIAALNAVINFIQC--LTSS---------- 219 (1114)
Q Consensus 171 ~~~~~------------~~~~~~~~~l~~~l~~~l~~~~~~-------~vr~~a~~~l~~l~~~--~~~~---------- 219 (1114)
++++. +.+..+++.+++.+.+++++..+. .++..+++|+..++.. ++..
T Consensus 156 ~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~ 235 (971)
T 2x1g_F 156 PEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLL 235 (971)
T ss_dssp HHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHH
Confidence 97532 223445677777777777532122 6788888888776652 1100
Q ss_pred --------------------c-----------------------hHhHHHhhHHHHHHHHHHH---HhCCCH---HHHHH
Q 001249 220 --------------------A-----------------------DRDRFQDLLPLMMRTLTES---LNNGNE---ATAQE 250 (1114)
Q Consensus 220 --------------------~-----------------------~~~~~~~l~p~ll~~l~~~---~~~~~~---~~~~~ 250 (1114)
. ..+.+..++|.++...... ..+++. +....
T Consensus 236 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 315 (971)
T 2x1g_F 236 EVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVH 315 (971)
T ss_dssp HHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHH
T ss_pred hhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHH
Confidence 0 0112233444444433322 234453 77788
Q ss_pred HHHHHHHHHccchHHHH-----------HHHHHHHHHHHHHhccC---CcchhHHHHHHHHHHHHHHhh-h-----ccch
Q 001249 251 ALELLIELAGTEPRFLR-----------RQLVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEAR-E-----RAPG 310 (1114)
Q Consensus 251 ~~~~l~~l~~~~~~~~~-----------~~~~~l~~~ll~~~~~~---~~~~~vr~~a~~~l~~l~~~~-~-----~~~~ 310 (1114)
.++++..+++.+...+. +++..+++.++.+...+ ..+++++..+++||.++++.. . +.+.
T Consensus 316 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~ 395 (971)
T 2x1g_F 316 IYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHK 395 (971)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHH
Confidence 89999988887776654 57778888888876431 246789999999999998731 0 1111
Q ss_pred hhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccC-CCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCC-
Q 001249 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGE-SSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA- 388 (1114)
Q Consensus 311 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~- 388 (1114)
......+++..+++.++..+...+++ +|...+ ++|+++ .+.++.+.+++..++..+| +.+++.+++.+.+.+.+
T Consensus 396 ~~~~~~~~~~~ll~~l~~~~~~p~~~-~~~~~d--~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~ 471 (971)
T 2x1g_F 396 CWEYIKPLYAHLTRILVRKSEQPDEK-SLAKWS--SDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADL 471 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCTT-TTSCSC--HHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcc-cccccC--HhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhc
Confidence 22234567888889988888654432 232111 111112 2345677888988888887 78999999999888764
Q ss_pred ----CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC--CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhH
Q 001249 389 ----PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR--DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 462 (1114)
Q Consensus 389 ----~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il 462 (1114)
++|+.|++++++++.+++++.+...++++.+++.+ ..+. |++|.||..+++++|++++++.... +|++.++
T Consensus 472 ~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl 548 (971)
T 2x1g_F 472 QRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMENP--AYIPPAI 548 (971)
T ss_dssp HHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhcCH--HHHHHHH
Confidence 79999999999999999999876677888888844 4444 6799999999999999999987654 7899999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHhhh-hhhh
Q 001249 463 PALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQ-EHFQ 539 (1114)
Q Consensus 463 ~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~--~~~v~~~al~~l~~l~~~~~-~~~~ 539 (1114)
+.++..+ + ++|+..|+.++..+++.++.. +.||++.++..+..+++.+ +...+..++.+++.++...+ +.+.
T Consensus 549 ~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~-l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 549 NLLVRGL-N---SSMSAQATLGLKELCRDCQLQ-LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHH-H---SSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHh-C---hHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999 4 689999999999999998754 7899999999999999984 57899999999999998765 6677
Q ss_pred hhHhhhhHHHHHHHhhcc-----CccchhhhHHHHHHHHHHHHHhc------------hhhhhhhHHHHHHHHHHHhcCC
Q 001249 540 KYYDAVMPFLKAILVNAT-----DKSNRMLRAKSMECISLVGMAVG------------KDKFRDDAKQVMEVLMSLQGSQ 602 (1114)
Q Consensus 540 ~~~~~i~~~L~~~l~~~~-----~~~~~~lr~~a~~~l~~i~~~~~------------~~~f~~~~~~i~~~l~~~~~~~ 602 (1114)
+|+..+++.+...+.... +++...-...++++++.+..+++ .+.+.++...+++.+..+...
T Consensus 624 ~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~- 702 (971)
T 2x1g_F 624 KYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM- 702 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh-
Confidence 888888888877665421 11111222334555555555554 235778888899988875542
Q ss_pred CCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecc
Q 001249 603 METDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKT 682 (1114)
Q Consensus 603 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 682 (1114)
...+..+.+.++.+++.++..+|+++.||+|.+++.++..+...+.
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---------------------------------- 748 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---------------------------------- 748 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC----------------------------------
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc----------------------------------
Confidence 2234578899999999999999999999999999999988743210
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh------ccccHHHHHHHhhhccccc------CCHHHHHHHHHhHHHHHHHHHHHHHc
Q 001249 683 SVLEEKATACNMLCCYADELKEG------FFPWIDQVAPTLVPLLKFY------FHEEVRKAAVSAMPELLRSAKLAIEK 750 (1114)
Q Consensus 683 ~~~~~k~~A~~~l~~~~~~~~~~------~~p~~~~~~~~l~~~l~~~------~~~~vr~~a~~al~~l~~~~~~~~~~ 750 (1114)
..++..++.++..++.. +.+.+..++..++..+... .++++++.....+..++......+..
T Consensus 749 ------~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~ 822 (971)
T 2x1g_F 749 ------APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLED 822 (971)
T ss_dssp ------HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGC
T ss_pred ------hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcC
Confidence 12344566666655442 2233333334344333221 26788888888888777643221110
Q ss_pred CCCCCCCHHHHHHH-HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001249 751 GLAPGRNESYVKQL-SDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRER 829 (1114)
Q Consensus 751 ~~~~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 829 (1114)
... +..+++..+..+.. +++.....++..+..++...+. .+.+..++...-..+...+-.. .+
T Consensus 823 -----------s~~~l~~i~~~~~~~l~~-~~~~~~~s~~~fl~~~i~~~~~---~~~~~~~~~~~g~~l~~~l~~~-~~ 886 (971)
T 2x1g_F 823 -----------KTLAYDRLVFYAQRGMTL-PESGAIRNSIQFLTHFVMQSRN---HAHVTEVVLATGEQTLYTAMMC-VG 886 (971)
T ss_dssp -----------TTSCHHHHHHHHHHHHTS-SCSSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred -----------CcccHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHhHHHHHHHHHHH-hc
Confidence 022 34455555555542 3444555677777776665321 1223333332222221111000 00
Q ss_pred HHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHHH
Q 001249 830 AERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDEL 882 (1114)
Q Consensus 830 ~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l 882 (1114)
+.- .+..+..++++++.+...+|..+.+++...
T Consensus 887 ----~~~----------------~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~ 919 (971)
T 2x1g_F 887 ----YLT----------------PRSQVDKFADILLAMNRKYAAEMAVWMKSL 919 (971)
T ss_dssp ----TTS----------------CGGGGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ccC----------------ChhHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence 000 011223367788888888888777777653
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.7e-39 Score=411.92 Aligned_cols=759 Identities=17% Similarity=0.169 Sum_probs=560.9
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHhcccC------CCC
Q 001249 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILP------ENG 140 (1114)
Q Consensus 68 ~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e-~~~~vr~~~~~~i~~ia~~~~~------~~~ 140 (1114)
+++.++|+.|...|++.- .+....+...|++.+.++ .+..+|..++.++........+ ...
T Consensus 12 s~d~~~r~~A~~~L~~~~------------~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERAA------------VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CSCHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH------------hcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhh
Confidence 678999999999998832 234567888899999874 3678999999998886643211 135
Q ss_pred chhhHHH--------HHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHH
Q 001249 141 WPELLPF--------MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVIN 211 (1114)
Q Consensus 141 w~~ll~~--------l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~ 211 (1114)
|+.+.+. +++.+.++++.. ..+..+++.++..... ..+++.+++.+.+.+.++. ++.+|..+++++..
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~ 156 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc--ccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 7655544 778888877777 8899999999876422 2356778888888888743 68999999999999
Q ss_pred HHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHccchHHHHHH--HHHHHHHHHHHhccCCcc
Q 001249 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNG--NEATAQEALELLIELAGTEPRFLRRQ--LVDVVGSMLQIAEAESLE 287 (1114)
Q Consensus 212 l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~l~~~ll~~~~~~~~~ 287 (1114)
++..+. .+.+...++.++..+.+.+.++ ++.+|..+++++..++...+..+... ...+++.+...+. +.+
T Consensus 157 l~~~~~----~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~--~~~ 230 (876)
T 1qgr_A 157 ICQDID----PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ--CPD 230 (876)
T ss_dssp HHHHSC----HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT--CSS
T ss_pred HHHhcC----HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC--CCC
Confidence 998752 3346677888888888888766 68899999999999887544333211 1235665555553 446
Q ss_pred hhHHHHHHHHHHHHHHhhhccchhhhcchhhHH-HHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHH
Q 001249 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFIN-RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1114)
Q Consensus 288 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~ 366 (1114)
.++|..+++++..+++. .+. .+.+++. .+++.++..+.+.++ ..+..+.+.+..++
T Consensus 231 ~~vr~~a~~~l~~l~~~---~~~---~~~~~~~~~l~~~~~~~~~~~~~-----------------~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 231 TRVRVAALQNLVKIMSL---YYQ---YMETYMGPALFAITIEAMKSDID-----------------EVALQGIEFWSNVC 287 (876)
T ss_dssp HHHHHHHHHHHHHHHHH---SGG---GCHHHHTTTHHHHHHHHHTCSSH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hHH---HHHHHHHHHHHHHHHHHhcCCch-----------------HHHHHHHHHHHHHH
Confidence 78999999999999984 332 3456677 788887776543211 12223333333333
Q ss_pred HHc-------------------CCCc----chHHHHHHHHHhhC-------CCChhHHHHHHHHHHHHHhhcHHHHHHhH
Q 001249 367 IAL-------------------GGNT----IVPVASEQLPAYLA-------APEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1114)
Q Consensus 367 ~~~-------------------~~~~----~~~~l~~~l~~~l~-------~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1114)
... +... .++.+++.+.+.+. +.+|..|.+|..+++.++..+++ ..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~ 364 (876)
T 1qgr_A 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV 364 (876)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH
T ss_pred HHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH
Confidence 221 0001 12344444444443 45799999999999999988764 457
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 496 (1114)
+.+++.+...+.|+++++|.+|+++++.+++.+++.....+++.++|.++..++| +++.||..|+++++.+++.+++..
T Consensus 365 ~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~ 443 (876)
T 1qgr_A 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAA 443 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCchhc
Confidence 8899999999999999999999999999999887443357889999999999999 899999999999999999876543
Q ss_pred -ccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh--------------hhhhhhHhhhhHHHHHHHhhccCccc
Q 001249 497 -LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--------------EHFQKYYDAVMPFLKAILVNATDKSN 561 (1114)
Q Consensus 497 -l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~--------------~~~~~~~~~i~~~L~~~l~~~~~~~~ 561 (1114)
..+|++.+++.++..+++. +.+|..++.+++.++...+ ..+.||++.++|.|...+..... +.
T Consensus 444 ~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~-~~ 521 (876)
T 1qgr_A 444 INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG-HQ 521 (876)
T ss_dssp SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS-CS
T ss_pred ccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc-ch
Confidence 4689999999999999885 8899999999999998876 24789999999999998865322 34
Q ss_pred hhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcC------C-CCCCC-----chhhHHHHHHHHHHHHhc-cCC
Q 001249 562 RMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS------Q-METDD-----PTTSYMLQAWARLCKCLG-QDF 628 (1114)
Q Consensus 562 ~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~------~-~~~~~-----~~~~~~~~~~~~l~~~~~-~~~ 628 (1114)
..+|..++++++.++..+| ..+.+++..+++.++..... . ...++ .++..++.+++.++..+| ..+
T Consensus 522 ~~~r~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~ 600 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKNSA-KDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600 (876)
T ss_dssp TTHHHHHHHHHHHHHHTCC-STTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hhHHHHHHHHHHHHHHHCc-hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence 5688999999999999999 46888999998888764321 0 11122 246778899999999999 899
Q ss_pred ccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccc
Q 001249 629 LPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFP 708 (1114)
Q Consensus 629 ~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p 708 (1114)
.||++.++|.+++.+....+ . ...++.++.+++.++..++..|.|
T Consensus 601 ~~~~~~l~~~l~~~l~~~~~---------------------------~--------~~v~~~a~~~l~~l~~~~~~~~~~ 645 (876)
T 1qgr_A 601 LQISDVVMASLLRMFQSTAG---------------------------S--------GGVQEDALMAVSTLVEVLGGEFLK 645 (876)
T ss_dssp HTTHHHHHHHHHHHC--------------------------------C--------CHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred hHHHHHHHHHHHHHHHhccC---------------------------C--------CCccHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999853210 0 012567899999999999999999
Q ss_pred cHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHH
Q 001249 709 WIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASM 788 (1114)
Q Consensus 709 ~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 788 (1114)
|++++++.+.+.+.+..++.+|..|+.+++.++..... .+..++..+++.+++.+.+
T Consensus 646 ~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-------------~~~~~~~~i~~~l~~~l~~---------- 702 (876)
T 1qgr_A 646 YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS-------------NIIPFCDEVMQLLLENLGN---------- 702 (876)
T ss_dssp GHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH-------------hhhhhHHHHHHHHHHHhCC----------
Confidence 99999999999998755789999999999988765410 1222222333322222211
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHH
Q 001249 789 LDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLI 868 (1114)
Q Consensus 789 l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~ 868 (1114)
++. +..++..+..+++.++
T Consensus 703 -----------------------------------------------~~~--------------~~~~~~~~~~~l~~i~ 721 (876)
T 1qgr_A 703 -----------------------------------------------ENV--------------HRSVKPQILSVFGDIA 721 (876)
T ss_dssp -----------------------------------------------TTS--------------CGGGHHHHHHHHHHHH
T ss_pred -----------------------------------------------ccc--------------cHHhhHHHHHHHHHHH
Confidence 000 0124455788889999
Q ss_pred HHhhhchhhhHHHHHHhHhhhhcCCC---C-------HHHHHHHHHHHHHHHhHhhh----------hhhhhhHhHHHHH
Q 001249 869 KTFKAAFLPFFDELSSYLTPMWGKDK---T-------AEERRIAICIFDDVAEQCRE----------AALKYYETYLPFL 928 (1114)
Q Consensus 869 ~~~~~~~~~~~~~l~~~l~~~l~~~~---~-------~~~r~~a~~~l~~~~~~~~~----------~~~~~~~~i~~~l 928 (1114)
...|+.|.+|+..++|.+...+..+. + ...|..++.++..+++.+|. .+.+|++.+++.+
T Consensus 722 ~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 801 (876)
T 1qgr_A 722 LAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFI 801 (876)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHH
T ss_pred HHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHH
Confidence 98999999999999998877664322 1 15677788888888888764 4466888888877
Q ss_pred HHhccCC--ChhHHhhhhHHHHHHHhhcCC-CchHH-HHHHHHHHHH-hhcCCCCCChhhhhhHHHHHHHHHHHHhhcC
Q 001249 929 LEACNDE--NQDVRQAAVYGLGVCAEFGGS-VVKPL-VGEALSRLNV-VIRHPNALQPENLMAYDNAVSALGKICQFHR 1002 (1114)
Q Consensus 929 l~~l~~~--~~~vr~~a~~~lg~l~~~~~~-~~~~~-~~~~l~~L~~-~l~~~~~~~~~~~~~~~na~~al~~l~~~~~ 1002 (1114)
...+.++ +..+|++|+.++|.++.+.+. .+.+| ...+++.|.+ .+.++ +..+|.+|++|+|.+....+
T Consensus 802 ~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~------~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 802 DHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSK------TNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcC------CHhHHHHHHHHHHHHHHhhc
Confidence 7766776 789999999999999999988 88888 4677777777 77554 46899999999999887554
No 9
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=2.7e-39 Score=422.06 Aligned_cols=963 Identities=13% Similarity=0.134 Sum_probs=643.3
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCC
Q 001249 59 LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE 138 (1114)
Q Consensus 59 ~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~ 138 (1114)
..|++-+. +.++.+|.+|..-|.+.+... ...+++.....+...+++.+.+ +++.+|+.++.+++.++... +.
T Consensus 9 ~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~----~~~~~~~~~~~il~~Ll~~L~d-~~~~vR~~A~~~L~~l~~~~-~~ 81 (1230)
T 1u6g_C 9 SNLLEKMT-SSDKDFRFMATNDLMTELQKD----SIKLDDDSERKVVKMILKLLED-KNGEVQNLAVKCLGPLVSKV-KE 81 (1230)
T ss_dssp HHHHHHTT-CSSHHHHHHHHHHHHHHTSSS----CCSCCTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTS-CH
T ss_pred HHHHHhcC-CCCHhHHHHHHHHHHHHHccc----ccCCChhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhC-CH
Confidence 44444443 678999999999999988765 3345666777888889999986 79999999999999999754 33
Q ss_pred CCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhh------hhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001249 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT------LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (1114)
Q Consensus 139 ~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 212 (1114)
..++.+++.+...+.+++..+|.++..+++.++..++.. ...+.+.++|.+..++.+..++.+|..|+.++..+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 578899999999999988899999999999999887654 34578899999999998423889999999999999
Q ss_pred HHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHH
Q 001249 213 IQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRH 292 (1114)
Q Consensus 213 ~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~ 292 (1114)
+..... .+...++.++..+...+.++++.+|..++.++..++...+..+ ++.+++.++..+... .+..+|.
T Consensus 162 ~~~~~~-----~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~---~~~~l~~l~~~L~~~-~~~~~r~ 232 (1230)
T 1u6g_C 162 LSRQGG-----LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV---FVDLIEHLLSELSKN-DSMSTTR 232 (1230)
T ss_dssp HHHTCS-----SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHT-CSSCSCT
T ss_pred HHHhHh-----HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHhccC-CchhHHH
Confidence 976532 1223456777777777888889999999999999998766543 233444444444322 2246788
Q ss_pred HHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCC
Q 001249 293 LAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN 372 (1114)
Q Consensus 293 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~ 372 (1114)
.++++|..+++. .+. .+.++++.++|.++..+.+. +...+..+..++..++..+| +
T Consensus 233 ~a~~~l~~l~~~---~~~---~~~~~l~~l~~~ll~~l~d~-----------------~~~vR~~a~~~l~~l~~~~~-~ 288 (1230)
T 1u6g_C 233 TYIQCIAAISRQ---AGH---RIGEYLEKIIPLVVKFCNVD-----------------DDELREYCIQAFESFVRRCP-K 288 (1230)
T ss_dssp THHHHHHHHHHH---SSG---GGTTSCTTHHHHHHHHHSSC-----------------CTTTHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHHH---hHH---HHHHHHHHHHHHHHHHhcCC-----------------CHHHHHHHHHHHHHHHHHCh-H
Confidence 899999999984 332 34567888999998887532 11246678888888888877 3
Q ss_pred c---chHHHHHHHHHhhC-------------------------------------CCChhHHHHHHHHHHHHHhhcHHHH
Q 001249 373 T---IVPVASEQLPAYLA-------------------------------------APEWQKHHAALIALAQIAEGCAKVM 412 (1114)
Q Consensus 373 ~---~~~~l~~~l~~~l~-------------------------------------~~~~~~r~aal~~l~~l~~~~~~~~ 412 (1114)
. +++.+++.+...+. +..|++|.+|+.+++.++...++.+
T Consensus 289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~ 368 (1230)
T 1u6g_C 289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 368 (1230)
T ss_dssp CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence 4 44555555433321 2359999999999999998766667
Q ss_pred HHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhch------------------hHHhhhhhhhHHHHHhhccCCCC
Q 001249 413 VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP------------------DLQNQFHPQVLPALAGAMDDFQN 474 (1114)
Q Consensus 413 ~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------------------~~~~~~~~~il~~l~~~l~~~~~ 474 (1114)
.++++.+++.+...+.|+++.||.+++.+++.++...+. .....+++.+++.+.+.+++ ++
T Consensus 369 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~-~~ 447 (1230)
T 1u6g_C 369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE-KS 447 (1230)
T ss_dssp HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC-SC
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhcc-CC
Confidence 788899999999999999999999999999988875532 12246788899999999999 89
Q ss_pred hhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHHHhhhhh-hhhhHhhhhHHHHH
Q 001249 475 PRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ--MVQEGALTALASVADSSQEH-FQKYYDAVMPFLKA 551 (1114)
Q Consensus 475 ~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~--~v~~~al~~l~~l~~~~~~~-~~~~~~~i~~~L~~ 551 (1114)
+++|..++.+++.++..++ ..+.+|++.+++.+...+++... .++..++.+++.++...+.. |.||++.++|.+..
T Consensus 448 ~~vr~~~~~~L~~l~~~~~-~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~ 526 (1230)
T 1u6g_C 448 VKTRQCCFNMLTELVNVLP-GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA 526 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHch-hhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHH
Confidence 9999999999999999875 44679999999999999998764 89999999999998766654 89999999999998
Q ss_pred HHhhccCccchhhhHHHHHHHHHHHHHhch------hhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhc
Q 001249 552 ILVNATDKSNRMLRAKSMECISLVGMAVGK------DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG 625 (1114)
Q Consensus 552 ~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~------~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 625 (1114)
.+.. ....+|..++.+++.++..+|. ..+.||.+.+++.++..... .+.+..+|..++.+++.++...|
T Consensus 527 ~l~d----~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~-~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 527 CVGD----PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA-ADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp HHTC----SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC-SSSCHHHHHHHHHHHHHHHHHTG
T ss_pred HHcc----cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhC
Confidence 7743 2345677789999999988884 37899999999998885532 12344689999999999999999
Q ss_pred cCCccchhhhhHHHHHhccCCCCc--------cccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHH
Q 001249 626 QDFLPYMSVVMPPLLQSAQLKPDV--------TITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCC 697 (1114)
Q Consensus 626 ~~~~~~l~~i~~~ll~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~ 697 (1114)
+.+.+|++.+++.+.+.+..+... .+...- . ..+-+.|-...+..-.-.++......|..|+.+++.
T Consensus 602 ~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~----~-~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~ 676 (1230)
T 1u6g_C 602 DNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSP----L-KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDI 676 (1230)
T ss_dssp GGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCS----S-CCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCc----c-ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999998887532100 000000 0 000000000000000000011123467889999999
Q ss_pred HHHHhhhhcc-ccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHH------------HcCCCCCCCHHHHHHH
Q 001249 698 YADELKEGFF-PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAI------------EKGLAPGRNESYVKQL 764 (1114)
Q Consensus 698 ~~~~~~~~~~-p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~------------~~~~~~~~~~~~~~~~ 764 (1114)
++...+..+. +++..++..+.+++++. +..++..+..++..++....... ..-............+
T Consensus 677 l~~~~~~~~~~~~v~~~l~~ll~ll~~~-D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l 755 (1230)
T 1u6g_C 677 LIKNYSDSLTAAMIDAVLDELPPLISES-DMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAM 755 (1230)
T ss_dssp HHHHCCTTCCHHHHHHHHTTCGGGSCTT-CHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHH
T ss_pred HHhcccccCCHHHHHHHHHHHHhhcCcc-hHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHH
Confidence 9999876542 45666666666666543 66778888888887764211000 0000000000001111
Q ss_pred ---HHHH---------HHHHHHHHccC--------CcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH---------
Q 001249 765 ---SDFI---------IPALVEALHKE--------PDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEI--------- 815 (1114)
Q Consensus 765 ---~~~i---------~~~l~~~~~~~--------~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l--------- 815 (1114)
+..+ ++.++..+.+. .+......+-.++..++...|+... ..+..++..+
T Consensus 756 ~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 834 (1230)
T 1u6g_C 756 LDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFIQDVKNSRSTDSI 834 (1230)
T ss_dssp HHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTTTTTTTTTCCHHH
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH-HHHHHHHHHhCCCCccHHH
Confidence 1000 12222222110 1122333444555555554443111 0000000000
Q ss_pred --H--HHHHHHHhhHHHHHHhhcCCCCC--hHhhhhh-hhhhHhHHHHHHHHHHHHHHHHHHh-----------------
Q 001249 816 --K--QVITASSSRKRERAERAKAEDFD--AEESELI-KEENEQEEEVFDQVGEILGTLIKTF----------------- 871 (1114)
Q Consensus 816 --~--~~l~~~~~~~~~~~~~~~~~~~d--~~~~~~~-~e~~~~~~~~~~~~~~~l~~l~~~~----------------- 871 (1114)
. ..+.. ... . .+.. ++-.+.+ .--.+..+.++.+++.++|.++...
T Consensus 835 ~~~~l~~l~~-~g~-------~--~~~~~~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~ 904 (1230)
T 1u6g_C 835 RLLALLSLGE-VGH-------H--IDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPK 904 (1230)
T ss_dssp HHHHHHHHHH-HHH-------H--SCCCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHH-hcc-------c--CCCcccccHHHHHHHHhCCCCHHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccch
Confidence 0 00000 000 0 0000 0000000 0001123445555555555544322
Q ss_pred -----------------hhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccC
Q 001249 872 -----------------KAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACND 934 (1114)
Q Consensus 872 -----------------~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~ 934 (1114)
+..+.|+...+++.+...+. +.....|..+..++|.++...+ ..++|.+.+.+.+
T Consensus 905 ~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~-~~~~~~r~~~a~~lg~l~~~~~-------~~l~p~l~~~l~~ 976 (1230)
T 1u6g_C 905 RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCE-CAEEGTRNVVAECLGKLTLIDP-------ETLLPRLKGYLIS 976 (1230)
T ss_dssp GHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCC-CSSTTHHHHHHHHHHHHHHSSG-------GGTHHHHTTTSSS
T ss_pred hhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhc-CcchhhHHHHHHHHhhhhccCh-------HHHHHHHHHHhcC
Confidence 12334555556666655542 2334456667777777765533 3567777778888
Q ss_pred CChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcCCCC--CHhhHHH
Q 001249 935 ENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI--DAAQVVP 1012 (1114)
Q Consensus 935 ~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~~~ 1012 (1114)
+++.+|..++.+++.++...+..+.++++.+++.+...+.++ +..+|.+|+.+++.++.+.|..+ +++.++|
T Consensus 977 ~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~------~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp 1050 (1230)
T 1u6g_C 977 GSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDP------DLNVRRVALVTFNSAAHNKPSLIRDLLDTVLP 1050 (1230)
T ss_dssp SCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSS------STHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHhcChHhHHHHHHHHHH
Confidence 888888888888888877777777778888888777777655 36799999999999999988877 6889999
Q ss_pred HHHhcCCCCCcH-----------------HHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHHHHHhcCCCCCCHHHH
Q 001249 1013 AWLNCLPIKGDL-----------------IEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVFAEILCGKDLATEQTL 1075 (1114)
Q Consensus 1013 ~~l~~Lp~~~d~-----------------~e~~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~ 1075 (1114)
.++..++.+.+. +.++++++++..+++.... .+ ++.++++.|...|. + +.+++
T Consensus 1051 ~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~-~i-----~~~~~~~~~~~gl~---d-~~di~ 1120 (1230)
T 1u6g_C 1051 HLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLD-RL-----DIFEFLNHVEDGLK---D-HYDIK 1120 (1230)
T ss_dssp HHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCS-SS-----CHHHHHHHHHHTTS---S-CHHHH
T ss_pred HHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHH-hC-----CHHHHHHHHHcccC---c-hHHHH
Confidence 999888665442 6789999999999975433 23 25666666666663 3 37899
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHH
Q 001249 1076 SRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQ 1110 (1114)
Q Consensus 1076 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 1110 (1114)
...+..+..+.+..|+. ..+-+.++-...++.|+
T Consensus 1121 ~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~l~ 1154 (1230)
T 1u6g_C 1121 MLTFLMLVRLSTLCPSA-VLQRLDRLVEPLRATCT 1154 (1230)
T ss_dssp HHHHHHHHHHHHSCCHH-HHTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHh
Confidence 99999999999988876 44444444455444443
No 10
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=7.7e-39 Score=407.60 Aligned_cols=694 Identities=14% Similarity=0.195 Sum_probs=489.6
Q ss_pred CChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
|+.+++.++|+.+++|+++.|++|+++|+++++ +|+. ...+.+++.++.++.+|++|+++||+.+.++ |..+++
T Consensus 13 ~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p~~-~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~----W~~l~~ 86 (1049)
T 3m1i_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPDA-WQKADQILQFSTNPQSKFIALSILDKLITRK----WKLLPN 86 (1049)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-STTG-GGGHHHHHHHCSCHHHHHHHHHHHHHHHHHT----GGGSCH
T ss_pred ccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHh-CchH-HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhh----CccCCH
Confidence 678999999999999999999999999999998 7876 4788899988889999999999999999987 999999
Q ss_pred HHHHHHHHHHHHHHhhch--------hhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHh
Q 001249 99 HTQSSLKSMLLQSIQLES--------AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~--------~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l 170 (1114)
+.+..||+.+++.+.+++ ++.+|++++.+++.|+++++| +.||++++.+.+.++ ++...++.++.+|..+
T Consensus 87 ~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l 164 (1049)
T 3m1i_C 87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLL 164 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHH
Confidence 999999999999998753 378999999999999999999 899999999999996 5666789999999999
Q ss_pred hhhhh----------------hhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcch-------------
Q 001249 171 SQYIG----------------DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD------------- 221 (1114)
Q Consensus 171 ~~~~~----------------~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~------------- 221 (1114)
++.+. +.+..+++.+++.+.+++.+..+..++..+++++..++.+.+....
T Consensus 165 ~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~ 244 (1049)
T 3m1i_C 165 SEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKF 244 (1049)
T ss_dssp HHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHH
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHh
Confidence 98754 2244567777888888776544677888888888777665431100
Q ss_pred -----------------------------HhHHHhhHHHHHHHHHH-----------HH---hCCCHHHHHHHHHHHHHH
Q 001249 222 -----------------------------RDRFQDLLPLMMRTLTE-----------SL---NNGNEATAQEALELLIEL 258 (1114)
Q Consensus 222 -----------------------------~~~~~~l~p~ll~~l~~-----------~~---~~~~~~~~~~~~~~l~~l 258 (1114)
...+..+++.++..+.. .. .+.+.+.+...++.+..+
T Consensus 245 l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~ 324 (1049)
T 3m1i_C 245 MTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1049)
T ss_dssp HHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 00111222333332221 01 122334445666666666
Q ss_pred HccchHHH------HHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcC
Q 001249 259 AGTEPRFL------RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLD 332 (1114)
Q Consensus 259 ~~~~~~~~------~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 332 (1114)
++.+...+ .+++..++++++.+... .+++++..+++||.++++.....+.......+++.++++.++..|.+
T Consensus 325 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~--~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~ 402 (1049)
T 3m1i_C 325 LARNRALLESDESLRELLLNAHQYLIQLSKI--EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVR 402 (1049)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 65544443 56677888888887654 37889999999999999831001223344567899999999999987
Q ss_pred CCCCcccccCCCC------CccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhC--CCChhHHHHHHHHHHHH
Q 001249 333 IEDDPLWHSAETE------DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--APEWQKHHAALIALAQI 404 (1114)
Q Consensus 333 ~~~~~~~~~~~~~------~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--~~~~~~r~aal~~l~~l 404 (1114)
.+ +.+|..+++. .+|+|+++.++.+.++|+.++...| ..+++.+.+.+.+.++ +.+|+.|+++++++|.+
T Consensus 403 ~e-d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsi 480 (1049)
T 3m1i_C 403 PE-EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSI 480 (1049)
T ss_dssp CT-TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHT
T ss_pred Cc-ceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 64 4457532221 1122333456778899999987665 7888999999988886 46899999999999999
Q ss_pred HhhcHHHHH-HhHHHHHHHHHhcCC-----CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHH
Q 001249 405 AEGCAKVMV-KNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQ 478 (1114)
Q Consensus 405 ~~~~~~~~~-~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~ 478 (1114)
++++.+... .+++.+++.+..... |+++.+|..+++++|++++++... ..+++.+++.++..+.+ ++++|+
T Consensus 481 a~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~--~~~l~~vl~~ll~~l~~-~~~~V~ 557 (1049)
T 3m1i_C 481 SGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH--WNFLRTVILKLFEFMHE-THEGVQ 557 (1049)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHHHHHHHHHHTTS-SCHHHH
T ss_pred hcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhcC-CCHHHH
Confidence 988776533 457888887776432 467888888999999999988765 37899999999999998 899999
Q ss_pred HHHHHHHHHhhhcCCcccc-------cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh--hhhhhhHhhhhHHH
Q 001249 479 AHAASAVLNFSENCTPEIL-------TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--EHFQKYYDAVMPFL 549 (1114)
Q Consensus 479 ~~a~~al~~l~~~~~~~~l-------~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~--~~~~~~~~~i~~~L 549 (1114)
..||.++..+++.++...+ .||++.++..+..++...+..-....+.+++.++...+ +...+|+..+++.+
T Consensus 558 ~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~ 637 (1049)
T 3m1i_C 558 DMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLP 637 (1049)
T ss_dssp HHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 9999999999998875432 49999999999999988777777889999999998887 35778999999887
Q ss_pred HHHHhhcc-----C---c-cchhhh--HHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHH
Q 001249 550 KAILVNAT-----D---K-SNRMLR--AKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWA 618 (1114)
Q Consensus 550 ~~~l~~~~-----~---~-~~~~lr--~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 618 (1114)
...|.... + . +....+ ...++|++.++.++| ..|.|++..++.-++.+.. .....+.
T Consensus 638 ~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~-~~f~p~~~~i~~~~l~~~~-----------~~~~~~~ 705 (1049)
T 3m1i_C 638 NMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG-ADFYPQLGHIYYNMLQLYR-----------AVSSMIS 705 (1049)
T ss_dssp HHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHH-----------HHHHHHH
T ss_pred HHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Confidence 76654311 0 0 001111 345778888999999 6788988877765443221 0011111
Q ss_pred HHHHH-----hccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHH
Q 001249 619 RLCKC-----LGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACN 693 (1114)
Q Consensus 619 ~l~~~-----~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~ 693 (1114)
..... .+..+..++..+.|.+.+.+..
T Consensus 706 ~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~------------------------------------------------ 737 (1049)
T 3m1i_C 706 AQVAAEGLIATKTPKVRGLRTIKKEILKLVET------------------------------------------------ 737 (1049)
T ss_dssp HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHH------------------------------------------------
T ss_pred HHHHccCchhhhhHHHHHHHHHHHHHHHHHHH------------------------------------------------
Confidence 11111 1222344556666665555421
Q ss_pred HHHHHHHH---hhhhccccHHHHHHHhhhcccccCCHHHH-HHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 001249 694 MLCCYADE---LKEGFFPWIDQVAPTLVPLLKFYFHEEVR-KAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFII 769 (1114)
Q Consensus 694 ~l~~~~~~---~~~~~~p~~~~~~~~l~~~l~~~~~~~vr-~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 769 (1114)
+... ++..+.||++.+++.++..+... ....| ..++.+++.++..... ....++..++..++
T Consensus 738 ----~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~-~~~~~~~~~l~l~~~ii~~~~~---------~~~~~l~~i~~~l~ 803 (1049)
T 3m1i_C 738 ----YISKARNLDDVVKVLVEPLLNAVLEDYMNN-VPDARDAEVLNCMTTVVEKVGH---------MIPQGVILILQSVF 803 (1049)
T ss_dssp ----HHHHCSCHHHHHHHTHHHHHHHHHHHHHHS-CGGGCCTHHHHHHHHHHHHHGG---------GCHHHHHHHHHHHH
T ss_pred ----HHHhCCCHHHHHHHHHHHHHHHHHHHHHhC-CcccccHHHHHHHHHHHHHHHH---------hhhhhHHHHHHHHH
Confidence 1000 01124566666666655443211 11111 2345566666554421 12345666666666
Q ss_pred HHHHHHHcc--CCcHHHHHHHHHHHHHHHHHhCC
Q 001249 770 PALVEALHK--EPDTEICASMLDSLNECIQISGP 801 (1114)
Q Consensus 770 ~~l~~~~~~--~~~~~~~~~~l~~l~~~l~~~~~ 801 (1114)
...+..+.+ +..++++...+.-+..++..+..
T Consensus 804 ~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~ 837 (1049)
T 3m1i_C 804 ECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFA 837 (1049)
T ss_dssp HHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHH
Confidence 666666653 45788988888888888876553
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=7.7e-35 Score=368.52 Aligned_cols=776 Identities=14% Similarity=0.114 Sum_probs=577.6
Q ss_pred HHHHH-hhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcC--CChhhHHHHHHHHHHhhhhhh---------
Q 001249 108 LLQSI-QLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS--DSVKLQESAFLIFAQLSQYIG--------- 175 (1114)
Q Consensus 108 ll~~l-~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~--~~~~~r~~al~~l~~l~~~~~--------- 175 (1114)
+++.+ .+ ++..+|+.+...+..+... .-|++.+.+.+.+.+ .+..+|..|...|+.......
T Consensus 9 ~L~~~~~s-~d~~~r~~Ae~~L~~~~~~-----~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~ 82 (861)
T 2bpt_A 9 LLENSILS-PDQNIRLTSETQLKKLSND-----NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHHHC-SSHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHHcccC-cCHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHH
Confidence 44445 54 6899999999998886542 236777777777765 367899999999998864310
Q ss_pred --hh-hh-hhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC-CHHHHHH
Q 001249 176 --DT-LT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-NEATAQE 250 (1114)
Q Consensus 176 --~~-~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~-~~~~~~~ 250 (1114)
.. +. +....+.+.+++.+.++ +..+|..+..++..++.... + ...+|.++..+.+.+.++ ++..+..
T Consensus 83 ~~~~~l~~~~~~~ik~~ll~~l~~~-~~~vr~~~~~~l~~i~~~~~----p---~~~w~~ll~~L~~~l~~~~~~~~r~~ 154 (861)
T 2bpt_A 83 RWITQVSPEAKNQIKTNALTALVSI-EPRIANAAAQLIAAIADIEL----P---HGAWPELMKIMVDNTGAEQPENVKRA 154 (861)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHG----G---GTCCHHHHHHHHHHTSTTSCHHHHHH
T ss_pred hHhhhCCHHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHHHHhhC----c---ccccHHHHHHHHHHHhcCCCHHHHHH
Confidence 11 22 13456667788888887 89999999999999887631 0 113566777777777777 8899999
Q ss_pred HHHHHHHHHccchHH---HHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001249 251 ALELLIELAGTEPRF---LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1114)
Q Consensus 251 ~~~~l~~l~~~~~~~---~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1114)
++.++..+++..... +.++...+++.+...+.+.+.+.++|..+++++..++.. ...... .......+++.+.
T Consensus 155 al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~---~~~~~~-~~~~~~~ll~~l~ 230 (861)
T 2bpt_A 155 SLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF---IKNNME-REGERNYLMQVVC 230 (861)
T ss_dssp HHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG---CHHHHT-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH---HHHHcc-ChhHHHHHHHHHH
Confidence 999999998865433 567888899988888765434688999999999887652 110000 0011233455554
Q ss_pred HhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchH----HHHHHHHHhhCCCChhHHHHHHHHHHH
Q 001249 328 SMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP----VASEQLPAYLAAPEWQKHHAALIALAQ 403 (1114)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~~~~~~~r~aal~~l~~ 403 (1114)
..+... ++..+..+.+++..++...+ +.+.+ .+++.+...+.+.+..+|..++.+++.
T Consensus 231 ~~~~~~-----------------~~~~r~~a~~~l~~l~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~ 292 (861)
T 2bpt_A 231 EATQAE-----------------DIEVQAAAFGCLCKIMSKYY-TFMKPYMEQALYALTIATMKSPNDKVASMTVEFWST 292 (861)
T ss_dssp HHHTCS-----------------CHHHHHHHHHHHHHHHHHHG-GGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHhcCC-----------------CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 443211 12245667888888887775 44433 555666667788899999999999999
Q ss_pred HHhhcH-----------------HHHHHhHHHHHHHHHhcCCC-------CChhHHHHHHHHHHHhHhhhchhHHhhhhh
Q 001249 404 IAEGCA-----------------KVMVKNLEQVLSMVLNSFRD-------PHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1114)
Q Consensus 404 l~~~~~-----------------~~~~~~l~~i~~~l~~~l~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1114)
+++... ....+++..++|.++..+.+ .++.+|.++..+++.++..+++ ...+
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~----~~~~ 368 (861)
T 2bpt_A 293 ICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN----HILE 368 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG----GGHH
T ss_pred HHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH----hHHH
Confidence 887532 13456678899999888874 4578999999999999988774 3467
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhh-
Q 001249 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF- 538 (1114)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~- 538 (1114)
.+++.+.+.+.+ +++++|.+|+.+++.+++.++++.+.+|++.+++.+...+.++++.+|..++.+++.++...+..+
T Consensus 369 ~l~~~l~~~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 369 PVLEFVEQNITA-DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHcCC-CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 888999999988 889999999999999998876555778999999999999999999999999999999999887765
Q ss_pred -hhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhc---hhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHH
Q 001249 539 -QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG---KDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYML 614 (1114)
Q Consensus 539 -~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~---~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 614 (1114)
.+|++.++|.+...+.. + ..+|..+..+++.++...+ .+.+.||++.+++.+....... +.+..+|..++
T Consensus 448 ~~~~~~~~l~~l~~~l~~----~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~-d~~~~vr~~a~ 521 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQD----H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI-DNEFNARASAF 521 (861)
T ss_dssp TTTTHHHHHHHHHHHHTS----C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS-CCGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcc----C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc-CcchHHHHHHH
Confidence 56899999999988743 1 4678888999999988876 3668899999999988865521 22245888999
Q ss_pred HHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHH
Q 001249 615 QAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNM 694 (1114)
Q Consensus 615 ~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~ 694 (1114)
.+++.++...|..+.+|++.++|.+++.+........ ... .+++ +....+.+..++.+
T Consensus 522 ~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~-------~i~--~~~~-------------~~~~~~~~~~~~~~ 579 (861)
T 2bpt_A 522 SALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDE-------NQL--TLED-------------AQSLQELQSNILTV 579 (861)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCG-------GGC--CHHH-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhc-------ccC--Chhh-------------HHHHHHHHHHHHHH
Confidence 9999999999999999999999999888742100000 000 0000 01112345678999
Q ss_pred HHHHHHHhhhhccccHHHHHHHhhhcccccCCH-HHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH
Q 001249 695 LCCYADELKEGFFPWIDQVAPTLVPLLKFYFHE-EVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALV 773 (1114)
Q Consensus 695 l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~-~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 773 (1114)
|+.++..++..+.||++.+++.+...+... +. .+|..++.+++.++..... ....++..++|.++
T Consensus 580 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~-------------~~~~~l~~i~~~l~ 645 (861)
T 2bpt_A 580 LAAVIRKSPSSVEPVADMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGK-------------GFEKYLETFSPYLL 645 (861)
T ss_dssp HHHHHHHCGGGTGGGHHHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGG-------------GGHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHH
Confidence 999999999999999999999999988764 45 8999999999988765421 24466777888888
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhH
Q 001249 774 EALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQE 853 (1114)
Q Consensus 774 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~ 853 (1114)
+.+. +++.+++..++..+..+...+|. .+.+++..++..+...+. +++. +
T Consensus 646 ~~l~-~~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~~~l~~~l~~~l~----------~~~~--------------~ 695 (861)
T 2bpt_A 646 KALN-QVDSPVSITAVGFIADISNSLEE-----DFRRYSDAMMNVLAQMIS----------NPNA--------------R 695 (861)
T ss_dssp HHHH-CTTSHHHHHHHHHHHHHHHHTGG-----GGHHHHHHHHHHHHHHHH----------CTTC--------------C
T ss_pred HHhc-cccHHHHHHHHHHHHHHHHHhch-----hccchHHHHHHHHHHHhC----------Cccc--------------c
Confidence 8884 45667888888888888887773 344455555555443321 1110 1
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCC---C-------HHHHHHHHHHHHHHHhHhh---hhhhhh
Q 001249 854 EEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK---T-------AEERRIAICIFDDVAEQCR---EAALKY 920 (1114)
Q Consensus 854 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~---~-------~~~r~~a~~~l~~~~~~~~---~~~~~~ 920 (1114)
..++..+..+++.+++..|+.|.||+..++|.+...+.... + ...|..++.+++.++..+| ..+.+|
T Consensus 696 ~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~ 775 (861)
T 2bpt_A 696 RELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPY 775 (861)
T ss_dssp TTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGG
T ss_pred HhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 34677789999999999999999999999999988764321 1 2457888899999998887 556789
Q ss_pred hHhHHHHHHHhccCC----ChhHHhhhhHHHHHHHhhc-CCCchHHHH-HHHHHHHHhhcCCCCCChhhhhhHHHHHHHH
Q 001249 921 YETYLPFLLEACNDE----NQDVRQAAVYGLGVCAEFG-GSVVKPLVG-EALSRLNVVIRHPNALQPENLMAYDNAVSAL 994 (1114)
Q Consensus 921 ~~~i~~~ll~~l~~~----~~~vr~~a~~~lg~l~~~~-~~~~~~~~~-~~l~~L~~~l~~~~~~~~~~~~~~~na~~al 994 (1114)
++.+++.+.+.+.|. +..+|.+|+.++|.++... |..+.+|++ .+++.|.+.+.... +.+..++++|.+|+
T Consensus 776 ~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~---~~~~~~~~~~~wa~ 852 (861)
T 2bpt_A 776 VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQ---LFSQATKDTARWAR 852 (861)
T ss_dssp HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCS---SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhcc---CCCHHHHHHHHHHH
Confidence 999999999988874 8899999999999999988 788999998 88999888876311 12467899999999
Q ss_pred HHHHh
Q 001249 995 GKICQ 999 (1114)
Q Consensus 995 ~~l~~ 999 (1114)
+.+.+
T Consensus 853 ~~~~~ 857 (861)
T 2bpt_A 853 EQQKR 857 (861)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 12
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=2.1e-35 Score=364.18 Aligned_cols=722 Identities=14% Similarity=0.184 Sum_probs=488.7
Q ss_pred CChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
||.+++.++++.+++|+++.|++|+++|+++++ +|+++ ..+.+++.++.++.+|++|+++||+.+.++ |..+++
T Consensus 13 ~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp~aw-~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~----W~~L~~ 86 (1023)
T 4hat_C 13 LDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPDAW-QKADQILQFSTNPQSKFIALSILDKLITRK----WKLLPN 86 (1023)
T ss_dssp CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CTTGG-GGHHHHHHHCCCHHHHHHHHHHHHHHHHHH----GGGSCH
T ss_pred CCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHc-CccHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHhh----hhcCCH
Confidence 899999999999999999999999999999999 79874 677888877889999999999999999997 999999
Q ss_pred HHHHHHHHHHHHHHhhc---h-----hhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHh
Q 001249 99 HTQSSLKSMLLQSIQLE---S-----AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e---~-----~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l 170 (1114)
+.+..+|+.+++.+... + .+.++++++.+++.|+++++| ..||++++.+.+.++++ ...++.++.+|..+
T Consensus 87 e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L 164 (1023)
T 4hat_C 87 DHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSSS-VNVCENNMIVLKLL 164 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Confidence 99999999999998752 1 356889999999999999999 78999999999998654 45688899999999
Q ss_pred hhhhhh----------------hhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCc---------------
Q 001249 171 SQYIGD----------------TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS--------------- 219 (1114)
Q Consensus 171 ~~~~~~----------------~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--------------- 219 (1114)
.+++.+ .+...++.+++.+...+.+..++.+...+++++..++.+++-.
T Consensus 165 ~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~ 244 (1023)
T 4hat_C 165 SEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKF 244 (1023)
T ss_dssp HHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHH
Confidence 887532 1223445555555555543334445555555555554443210
Q ss_pred ---------------------------chHhHHHhhHHHHHHHH-H----------HHHh---CCCHHHHHHHHHHHHHH
Q 001249 220 ---------------------------ADRDRFQDLLPLMMRTL-T----------ESLN---NGNEATAQEALELLIEL 258 (1114)
Q Consensus 220 ---------------------------~~~~~~~~l~p~ll~~l-~----------~~~~---~~~~~~~~~~~~~l~~l 258 (1114)
...+.+..+++.+++.+ . .... +.|.+.....+.++..+
T Consensus 245 L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~ 324 (1023)
T 4hat_C 245 MTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTY 324 (1023)
T ss_dssp HHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHH
Confidence 00011222222222222 0 1111 11344445556666666
Q ss_pred HccchHHHH------HHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcC
Q 001249 259 AGTEPRFLR------RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLD 332 (1114)
Q Consensus 259 ~~~~~~~~~------~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 332 (1114)
.+.+...+. +.+...+..++.+... .+.++-..+++||..+++..-..|.......+++.++++.++..|.+
T Consensus 325 ~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~--~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~ 402 (1023)
T 4hat_C 325 LARNRALLESDESLRELLLNAHQYLIQLSKI--EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVR 402 (1023)
T ss_dssp HHHHGGGGTSCGGGHHHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 665544332 2222334456665433 36778889999999999842111111223567889999999999998
Q ss_pred CCCC-------cccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCC--CChhHHHHHHHHHHH
Q 001249 333 IEDD-------PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA--PEWQKHHAALIALAQ 403 (1114)
Q Consensus 333 ~~~~-------~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~aal~~l~~ 403 (1114)
+++. .+|...... |.|+...++...++|..++...+ ..+++.+++.+.+.+.+ .+|+.|+|+++++|+
T Consensus 403 P~e~~ive~d~~~~~~e~~~--d~d~~~~f~~~Rd~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~ga 479 (1023)
T 4hat_C 403 PEEVLVVENDEGEIVREFVK--ESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGS 479 (1023)
T ss_dssp CTTCCEEECTTSCEEECSSC--CGGGHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHH
T ss_pred CcccccCCCCCccHHHHhcc--chHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 7632 234221111 11222345556688888887766 68888899998887764 689999999999999
Q ss_pred HHhhcHH-HHHHhHHHHHHHHHhcCC-----CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhH
Q 001249 404 IAEGCAK-VMVKNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 477 (1114)
Q Consensus 404 l~~~~~~-~~~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v 477 (1114)
+++++.+ ...++++.+++.++..+. |+++.||..++|++|++++++... ..+++.++..+++.+.+ ++++|
T Consensus 480 Ia~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~--~~~L~~vl~~L~~~l~~-~~~~v 556 (1023)
T 4hat_C 480 ISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH--WNFLRTVILKLFEFMHE-THEGV 556 (1023)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC--HHHHHHHHHHHHHHTTC-SCHHH
T ss_pred HHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHhhc-CCHHH
Confidence 9998875 467889999999988775 577889999999999999998654 36899999999999988 78999
Q ss_pred HHHHHHHHHHhhhcCCccc-------ccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh--hhhhHhhhhHH
Q 001249 478 QAHAASAVLNFSENCTPEI-------LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH--FQKYYDAVMPF 548 (1114)
Q Consensus 478 ~~~a~~al~~l~~~~~~~~-------l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~--~~~~~~~i~~~ 548 (1114)
+..||+++..+++.|+... ..||++.++..+...+...+..-+..++.+++.++...+.. ...|++.+++.
T Consensus 557 ~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~ 636 (1023)
T 4hat_C 557 QDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1023)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHh
Confidence 9999999999999887542 25899999999999988888888899999999999998743 44588888888
Q ss_pred HHHHHhhcc-----Cc------cchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcC------------CC-C
Q 001249 549 LKAILVNAT-----DK------SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS------------QM-E 604 (1114)
Q Consensus 549 L~~~l~~~~-----~~------~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~------------~~-~ 604 (1114)
+...|+... ++ +....-...++|.+.++.++| ..|.|++..+++.++++... +. .
T Consensus 637 ~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg-~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~ 715 (1023)
T 4hat_C 637 PNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG-ADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIA 715 (1023)
T ss_dssp HHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 887776522 11 111122346889999999999 78999999888877764221 00 0
Q ss_pred CCCc-------hhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCce
Q 001249 605 TDDP-------TTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKR 677 (1114)
Q Consensus 605 ~~~~-------~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (1114)
...+ ++..+++.+....... ++.......++|.+++.+-.+-... .
T Consensus 716 ~~~~~~r~~r~ik~~il~l~~~~i~~~-~~~~~~~~~~~~~l~~~vl~dY~~~--------------------------~ 768 (1023)
T 4hat_C 716 TKTPKVRGLRTIKKEILKLVETYISKA-RNLDDVVKVLVEPLLNAVLEDYMNN--------------------------V 768 (1023)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHC-SCHHHHHHHTHHHHHHHHHHHHHHS--------------------------C
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHhHHHHHHHHHHHHHhC--------------------------C
Confidence 0000 1112222222211111 1111111223333333331100000 0
Q ss_pred eeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhh----hcccc--cCCHHHHHHHHHhHHHHHHHHHHHHHcC
Q 001249 678 IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLV----PLLKF--YFHEEVRKAAVSAMPELLRSAKLAIEKG 751 (1114)
Q Consensus 678 ~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~----~~l~~--~~~~~vr~~a~~al~~l~~~~~~~~~~~ 751 (1114)
-..|. ...+.+.+.++..++..+.|.++.+++.++ .++++ ..+++.|..-.+.+..+...+..++-..
T Consensus 769 ~~~r~------~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~ 842 (1023)
T 4hat_C 769 PDARD------AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLEL 842 (1023)
T ss_dssp GGGCC------HHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTS
T ss_pred hhhcc------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcC
Confidence 00000 123557778888888888888888877754 33322 3478999999999888877664433321
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhC
Q 001249 752 LAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISG 800 (1114)
Q Consensus 752 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 800 (1114)
.++..+ .++..++.+++. +.+++-...+..+.+++..+.
T Consensus 843 -----~~~~~~----~~~~~~~~a~~h-~~r~~~~~~l~~~~~ll~~~~ 881 (1023)
T 4hat_C 843 -----PPAAFK----LFVDAICWAFKH-NNRDVEVNGLQIALDLVKNIE 881 (1023)
T ss_dssp -----CHHHHH----HHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHH----HHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHHH
Confidence 222333 344455566653 567777778888888887655
No 13
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=8e-36 Score=368.35 Aligned_cols=771 Identities=12% Similarity=0.163 Sum_probs=497.2
Q ss_pred CCChHHHHHHHHHHcCC--ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCC--CHHHHHHHHHHHHHhcccCCCCcc
Q 001249 18 GPDSAPFETLISHLMST--SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSP--HPEARAMAAVLLRKLLTRDDSFLW 93 (1114)
Q Consensus 18 ~~~~~~l~~ll~~~~s~--d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~--~~~~R~~A~~~Lk~~l~~~~~~~w 93 (1114)
.|+.+++.++++.+++| |++.|++|++.|+++++ .|+++ .....++.++. ++.+|.+|+.+|++.++
T Consensus 2 ~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~-sp~aw-~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~------- 72 (980)
T 3ibv_A 2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRS-SSTGW-KICHEIFSEKTKYKPSTRLICLQTLSEKVR------- 72 (980)
T ss_dssp -CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH-STTHH-HHHHHHTTCTTTSCHHHHHHHHHHHHHHHH-------
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc-ChhHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-------
Confidence 47889999999888887 68999999999999999 79875 77888887743 89999999999999997
Q ss_pred cCCCHH----HHHHHHHHHHHHHhhc----hhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCCh-hhHHHHH
Q 001249 94 PRLSLH----TQSSLKSMLLQSIQLE----SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAF 164 (1114)
Q Consensus 94 ~~l~~~----~~~~i~~~ll~~l~~e----~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~-~~r~~al 164 (1114)
.++++ .+..+|+.+++.+... ..+.+|++++.+++.++.+++| ..||++++.+.+.+++++. ......+
T Consensus 73 -~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~~~~~~~~~~~L 150 (980)
T 3ibv_A 73 -EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAASSQSEFSNFYL 150 (980)
T ss_dssp -HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHCCHHHHHHHH
T ss_pred -hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcCCChhHHHHHHH
Confidence 36788 9999999999999852 3577999999999999999998 7999999999999876544 3445566
Q ss_pred HHHHHhhhhhhhh------------------hhhh-----HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcch
Q 001249 165 LIFAQLSQYIGDT------------------LTPH-----LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1114)
Q Consensus 165 ~~l~~l~~~~~~~------------------~~~~-----~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 221 (1114)
++|..+.+++.+. +... .+.++.++..+.... ++.++..+++|+..++.+++
T Consensus 151 riL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~-~~~l~~~~L~~l~s~i~wi~---- 225 (980)
T 3ibv_A 151 KVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAK-NYGTVGLCLQVYAQWVSWIN---- 225 (980)
T ss_dssp HHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTSC----
T ss_pred HHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHhhcC----
Confidence 6777666764321 1111 233333444444434 77889999999999998763
Q ss_pred HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc---------------------------------------
Q 001249 222 RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE--------------------------------------- 262 (1114)
Q Consensus 222 ~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~--------------------------------------- 262 (1114)
...+.. +.+++.++..+. +++.+..+++||.+++...
T Consensus 226 ~~~i~~--~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~ 301 (980)
T 3ibv_A 226 INLIVN--EPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLI 301 (980)
T ss_dssp HHHHHC--HHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHH
T ss_pred HHhhhc--chHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHH
Confidence 111111 234444444433 2344444444444332211
Q ss_pred -------hH--------------HHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccch---hhhcchhh
Q 001249 263 -------PR--------------FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG---MMRKLPQF 318 (1114)
Q Consensus 263 -------~~--------------~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~~~ 318 (1114)
.. ...+++..+++.++.+.+++ ++++...+++||..+++..++.+. ......++
T Consensus 302 ~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~--~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~ 379 (980)
T 3ibv_A 302 NAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDD--YDETSTAVFPFLSDLLVSLRKESSSKELSASLKEF 379 (980)
T ss_dssp HHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS--SHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHH
T ss_pred HHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence 00 11255667788888877654 578888899999998874222111 11224578
Q ss_pred HHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchh-hHHHHHHHHHHHcCCCcchH----HHHHHHHHhhC---CCC
Q 001249 319 INRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYS-VGQECLDRLAIALGGNTIVP----VASEQLPAYLA---APE 390 (1114)
Q Consensus 319 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~-~a~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---~~~ 390 (1114)
+.++++.++..|.+++++ +|..++ |+||+++...++ ... .+......+|++.+++ .+.+.+.+.+. +.+
T Consensus 380 l~~Ll~~li~k~~yp~d~-~~~~~~-d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~ 456 (980)
T 3ibv_A 380 LKSLLEAIIKKMKYDESQ-EWDDDP-DSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENS 456 (980)
T ss_dssp HHHHHHHHHHTTSCCTTC-CCCCCS-SSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHccCCCcc-cccccc-chhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 899999999999987654 475321 222222222232 223 3333344455567777 66666666653 457
Q ss_pred hhHHHHHHHHHHHHHhhcHHHH------HHhHHHHHHHHHhcCC-----CCChhHHHHHHHHHHHhHhhhchhHHhhhhh
Q 001249 391 WQKHHAALIALAQIAEGCAKVM------VKNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1114)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~------~~~l~~i~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1114)
|+.+++++++++.+++++.... .++++.+++.+...++ +++|.||..+++++|++++++... ..+++
T Consensus 457 W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~--~~~l~ 534 (980)
T 3ibv_A 457 WQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE--SAAIP 534 (980)
T ss_dssp HHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC--CTTHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC--chhHH
Confidence 9999999999999999986421 1345566666666543 899999999999999999999754 47899
Q ss_pred hhHHHHHh--hccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC----C-----------------
Q 001249 460 QVLPALAG--AMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG----K----------------- 516 (1114)
Q Consensus 460 ~il~~l~~--~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~----~----------------- 516 (1114)
.+++.++. ++.+ ++++||.+|+.++.+|++.+++. +.||++.++..+..++... +
T Consensus 535 ~~L~~ll~~~gl~~-~~~~V~~~a~~af~~f~~~~~~~-L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (980)
T 3ibv_A 535 ALIEYFVGPRGIHN-TNERVRPRAWYLFYRFVKSIKKQ-VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSD 612 (980)
T ss_dssp HHHHHHTSTTTTTC-CCTTTHHHHHHHHHHHHHHTTTT-CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTT
T ss_pred HHHHHHhccccccC-CChhHHHHHHHHHHHHHHHhhHH-hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCC
Confidence 99999999 8888 88999999999999999999865 6899999999998877631 0
Q ss_pred hhHHHHHHHHHHHHHHhhh---hhhhhhHhhhhHHHHHHHhhccC----c-cchhhhHHHHHHHHHHHHHhch--hh---
Q 001249 517 QMVQEGALTALASVADSSQ---EHFQKYYDAVMPFLKAILVNATD----K-SNRMLRAKSMECISLVGMAVGK--DK--- 583 (1114)
Q Consensus 517 ~~v~~~al~~l~~l~~~~~---~~~~~~~~~i~~~L~~~l~~~~~----~-~~~~lr~~a~~~l~~i~~~~~~--~~--- 583 (1114)
..-+-..+.++|.++...+ +.-..|+..+++++..-+..... . +....-...+.+++.+++.... ..
T Consensus 613 ~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p 692 (980)
T 3ibv_A 613 FNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVA 692 (980)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCS
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCc
Confidence 1235668999999998764 34556888998888776664221 1 1111112446667777765431 11
Q ss_pred hhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCC
Q 001249 584 FRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDS 663 (1114)
Q Consensus 584 f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 663 (1114)
....+.++++.++...+. ...+..+|+.+..+|.++..++|.++.|++|.+++.++...+..+
T Consensus 693 ~~~~f~~~~~~il~~l~~-~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e---------------- 755 (980)
T 3ibv_A 693 WLASFNKASDEIFLILDR-MGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNE---------------- 755 (980)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT----------------
T ss_pred HHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH----------------
Confidence 233455566666553331 234567999999999999999999999999999999996553210
Q ss_pred CCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhh----hcccccC--CHH------HHH
Q 001249 664 DDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLV----PLLKFYF--HEE------VRK 731 (1114)
Q Consensus 664 ~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~----~~l~~~~--~~~------vr~ 731 (1114)
-...+.+++.++..++..+.|.+.++++.++ ..+.... .+. +|+
T Consensus 756 ------------------------~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r 811 (980)
T 3ibv_A 756 ------------------------LVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRK 811 (980)
T ss_dssp ------------------------HHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 1224568899999988888888776665543 3333210 122 333
Q ss_pred HHHHhHHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCC-CHHHHH
Q 001249 732 AAVSAMPELLRSAKLAIEKGLAPGR-NESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLL-DEGQVR 809 (1114)
Q Consensus 732 ~a~~al~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~-~~~~~~ 809 (1114)
+-...+..++..- ..+. .++.-+..++.++..++....+-+|+.....++..+..++...|..- -++.-.
T Consensus 812 ~~~~fl~~i~~~~--------~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~ 883 (980)
T 3ibv_A 812 SYISFILQLLNKG--------FGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFEN 883 (980)
T ss_dssp HHHHHHHHHHHTT--------CTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHH
T ss_pred HHHHHHHHHHhCC--------chhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHH
Confidence 3333333333211 0000 01122344555666666554444666777788888888888875311 112222
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHH-HHHh
Q 001249 810 SIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDE-LSSY 885 (1114)
Q Consensus 810 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-l~~~ 885 (1114)
-+++ +.+..-.. .-++++|-.|. ....+..-++.++..+....|+.|..|+.. .+|.
T Consensus 884 f~~~-~~~~~f~~----------p~~~~f~~~Da--------q~~~~~~e~~~~~k~~~~~~g~~~~~~l~~~~lp~ 941 (980)
T 3ibv_A 884 FTLS-LTPLCFEM----------PVNPNFNTRDG--------QSLVVLGELAGLQKIILEKLGDIYKSYLVTVYFPT 941 (980)
T ss_dssp HHHH-HHHHHHHG----------GGC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHH-HHHHHHHh----------hcCCCCChhhH--------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCc
Confidence 2233 32221111 11222332211 223455567888888888889888777644 4553
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.2e-34 Score=360.84 Aligned_cols=747 Identities=16% Similarity=0.182 Sum_probs=546.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhcc-CCcchhHHHHHHHHHHHHHHhhhccc
Q 001249 231 LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA-ESLEEGTRHLAIEFVITLAEARERAP 309 (1114)
Q Consensus 231 ~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~ 309 (1114)
.+.+.+... .+++.+.|+.|-..|..+-. .| .+..++..++.. .+.+..+|..|.-.+...+.. +.
T Consensus 14 ~l~~~l~~~-~s~d~~~r~~Ae~~L~~~~~-~p--------~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~--~w- 80 (852)
T 4fdd_A 14 QILQLLKES-QSPDTTIQRTVQQKLEQLNQ-YP--------DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKA--HF- 80 (852)
T ss_dssp HHHHHHHHH-TCSCHHHHHHHHHHHHHHTT-SH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTT--SG-
T ss_pred HHHHHHHHH-hCcCHHHHHHHHHHHHHHHh-CC--------CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH--cc-
Confidence 455555543 46788999999888876532 22 222222333322 345788999998777766652 11
Q ss_pred hhhhcc-hhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCC
Q 001249 310 GMMRKL-PQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA 388 (1114)
Q Consensus 310 ~~~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~ 388 (1114)
..+ +.....+-+.+++.+.+. +...+..+..++..++...+ ....|.+++.+.+.+++
T Consensus 81 ---~~~~~~~~~~ik~~ll~~l~~~-----------------~~~vr~~~a~~i~~ia~~~~-~~~wp~ll~~L~~~l~~ 139 (852)
T 4fdd_A 81 ---QNFPNGVTDFIKSECLNNIGDS-----------------SPLIRATVGILITTIASKGE-LQNWPDLLPKLCSLLDS 139 (852)
T ss_dssp ---GGCCHHHHHHHHHHHHTTTTCS-----------------SHHHHHHHHHHHHHHHHHTT-TTTCTTHHHHHHHHHSC
T ss_pred ---CCCCHHHHHHHHHHHHHHHcCC-----------------CHHHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHcC
Confidence 112 223344555565554321 11346678888888888765 45678899999999999
Q ss_pred CChhHHHHHHHHHHHHHhhcHHHHHH-----hHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHH
Q 001249 389 PEWQKHHAALIALAQIAEGCAKVMVK-----NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1114)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~~~~~-----~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 463 (1114)
+++..|++++.+++.+++..+..+.. .+..+++.++.+++|+++.||.+|+++++.+....+..+ ..+++.+++
T Consensus 140 ~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~-~~~~~~~l~ 218 (852)
T 4fdd_A 140 EDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQAL-MLHIDSFIE 218 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHH-HTSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHH
Confidence 99999999999999999877654432 278899999999999999999999999999887655444 467788999
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh--hhhhhhhh
Q 001249 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS--SQEHFQKY 541 (1114)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~--~~~~~~~~ 541 (1114)
.++..+.+ +++.+|..++.+|..+++..+ +.+.+|++.+++.+...+++.+..+|..++.++..+++. ....+.||
T Consensus 219 ~l~~~~~d-~~~~vr~~a~~~L~~l~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~ 296 (852)
T 4fdd_A 219 NLFALAGD-EEPEVRKNVCRALVMLLEVRM-DRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRH 296 (852)
T ss_dssp HHHHHHTC-CCHHHHHHHHHHHHHHHHHCH-HHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTT
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 99999998 899999999999999998875 557899999999999999999999999999999998863 33446789
Q ss_pred HhhhhHHHHHHHh----------hc--cCc------cchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCC
Q 001249 542 YDAVMPFLKAILV----------NA--TDK------SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQM 603 (1114)
Q Consensus 542 ~~~i~~~L~~~l~----------~~--~~~------~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~ 603 (1114)
++.++|.+...+. .. .++ ....+|..+..+++.++...|. .. .+.+++.+.....+
T Consensus 297 ~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~---~~~l~~~l~~~l~~-- 370 (852)
T 4fdd_A 297 LPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-EL---LPHILPLLKELLFH-- 370 (852)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GG---HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HH---HHHHHHHHHHHhcC--
Confidence 9999999988762 11 010 2346788899999999998884 33 33466666654432
Q ss_pred CCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecch
Q 001249 604 ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTS 683 (1114)
Q Consensus 604 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 683 (1114)
.+..+|..++.+++.++...++.+.+|++.++|.++..+.. + .
T Consensus 371 -~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d-~-------------------~---------------- 413 (852)
T 4fdd_A 371 -HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD-K-------------------K---------------- 413 (852)
T ss_dssp -SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC-S-------------------S----------------
T ss_pred -CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC-C-------------------C----------------
Confidence 34568999999999999988888889999999999999842 1 0
Q ss_pred hHHHHHHHHHHHHHHHHHhhh-hccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHH
Q 001249 684 VLEEKATACNMLCCYADELKE-GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVK 762 (1114)
Q Consensus 684 ~~~~k~~A~~~l~~~~~~~~~-~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 762 (1114)
..-|..|+.+++.++..++. ...+|+..+++.++..+.+. +..+|..|+.+++.++..... ...
T Consensus 414 -~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~-------------~l~ 478 (852)
T 4fdd_A 414 -ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACT-------------ELV 478 (852)
T ss_dssp -HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGG-------------GGG
T ss_pred -HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhH-------------hhH
Confidence 23467788999999987754 46789999999999998765 889999999999999875421 133
Q ss_pred HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChH
Q 001249 763 QLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLL-DEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAE 841 (1114)
Q Consensus 763 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~ 841 (1114)
.++..+++.|+..+.... ......++.++..+...+|+.+ .++.++.++..+...+.. ..+++
T Consensus 479 ~~l~~ll~~L~~~l~~~~-~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~-----------l~d~~---- 542 (852)
T 4fdd_A 479 PYLAYILDTLVFAFSKYQ-HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM-----------LKDED---- 542 (852)
T ss_dssp GGHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHH-----------SCTTC----
T ss_pred hHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHh-----------ccccc----
Confidence 456677777777776543 3333346667777766666533 334444444443332211 01111
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcC----------------CCCHHHHHHHHHH
Q 001249 842 ESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGK----------------DKTAEERRIAICI 905 (1114)
Q Consensus 842 ~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~----------------~~~~~~r~~a~~~ 905 (1114)
..++ .+.++++.+++..|..|.||+..+++.++..++. ..+.+.+..++.+
T Consensus 543 ------------~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~ 609 (852)
T 4fdd_A 543 ------------KDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDL 609 (852)
T ss_dssp ------------TTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHH
T ss_pred ------------HHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHH
Confidence 1122 4789999999999999999999887765544321 1234467788999
Q ss_pred HHHHHhHhhhhhhhhh--HhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhh
Q 001249 906 FDDVAEQCREAALKYY--ETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPEN 983 (1114)
Q Consensus 906 l~~~~~~~~~~~~~~~--~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~ 983 (1114)
++.+++.+|..+.+|+ +.+++.++.++.++++.||+.|+.++|.++...+..+.+|++.+++.+.+.+... +
T Consensus 610 l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~------~ 683 (852)
T 4fdd_A 610 LSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE------F 683 (852)
T ss_dssp HHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTT------S
T ss_pred HHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcc------c
Confidence 9999999999888887 7999999999999999999999999999999999999999999999999998443 4
Q ss_pred hhhHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhcCCCCC-cHHHHHHHHHHHHHHHhhcCCcccCcCcCchhHHHHHH
Q 001249 984 LMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLNCLPIKG-DLIEAKIVHEQLCSMVERSDSDLLGPNHQYLPKIVSVF 1060 (1114)
Q Consensus 984 ~~~~~na~~al~~l~~~~~~~~--~~~~~~~~~l~~Lp~~~-d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~l~~i~~~~ 1060 (1114)
..+|.+|++++|.++...+..+ ++..+++.++..+...+ ......++..++.+|... +|+.+.+ |++++++.|
T Consensus 684 ~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~-~~~~~~~---~l~~~~~~~ 759 (852)
T 4fdd_A 684 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV-CPQEVAP---MLQQFIRPW 759 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH-CHHHHGG---GHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHh-CHHHhCc---cHHHHHHHH
Confidence 7899999999999998876655 46788888888764322 234567788888888854 6666665 899999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhhCChhhHH---------HHHhcCCHHHHHHHHhhh
Q 001249 1061 AEILCGKDLATEQTLSRIVNLLKQLQQTLPPATLA---------STWSSLQPQQQLALQSIL 1113 (1114)
Q Consensus 1061 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~~l~~~~~~~l~~~~ 1113 (1114)
+..|.... +.+.+....+.+-.+.+..|+.... +-|...++|.+..+++++
T Consensus 760 ~~~l~~~~--d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 819 (852)
T 4fdd_A 760 CTSLRNIR--DNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKIL 819 (852)
T ss_dssp HHHHHTSC--SSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHhcccc--ccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99997433 2233444555555555566653122 223456788888887765
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=100.00 E-value=3.8e-37 Score=359.46 Aligned_cols=430 Identities=18% Similarity=0.294 Sum_probs=355.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccC-CCHHHHHHHHHHHHHhcccCC-------CCccc
Q 001249 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (1114)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~-~~~~~R~~A~~~Lk~~l~~~~-------~~~w~ 94 (1114)
+|.++|.+++|||+++|++||++|+++++.+++.|...|++++.++ .++.+|++|+++||+.+.++| ...|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 5889999999999999999999999988743445678999999874 589999999999999998763 12378
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC--ChhhHHHHHHHHHHhhh
Q 001249 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQ 172 (1114)
Q Consensus 95 ~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~--~~~~r~~al~~l~~l~~ 172 (1114)
.++++.++.||..+++.+.++ ++.+ +.++.+++.|+++++|.+.||+++|.+.+.++++ ++..|++++.+|+.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~-~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGTE-TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTCC-CSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCC-Cchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999874 6677 8999999999999888679999999999999988 89999999999999999
Q ss_pred hh-hhhhhhhHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHH
Q 001249 173 YI-GDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250 (1114)
Q Consensus 173 ~~-~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~ 250 (1114)
.. ++.+.++.+.+++.+.+++.++. +..||..|++++..++.++.+...... ..+.+++.+...+.++++++|..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~vr~~ 236 (462)
T 1ibr_B 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES---ERHFIMQVVCEATQCPDTRVRVA 236 (462)
T ss_dssp HSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHH---HHHHHHHHHHHHTTCSSHHHHHH
T ss_pred hCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHhcCCCCHHHHHH
Confidence 76 56677889999999999999863 689999999999998765421111111 12345666777777889999999
Q ss_pred HHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhc------------cc---hhhhc
Q 001249 251 ALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER------------AP---GMMRK 314 (1114)
Q Consensus 251 ~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~------------~~---~~~~~ 314 (1114)
++++|..+++.++..+.+|+. .+++.++..+. +.++++|..++++|..+++.... .+ .....
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (462)
T 1ibr_B 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMK--SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (462)
T ss_dssp HHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH--CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHH
Confidence 999999999999998999999 99998887764 45788999999999999885200 00 01111
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHH
Q 001249 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1114)
Q Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 394 (1114)
..++++.++|.+++.|.+.++ |+++++++.+..|..+++.++..+| +.+++.+++.+.+.+++++|++|
T Consensus 315 ~~~~~~~l~p~l~~~l~~~d~----------d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r 383 (462)
T 1ibr_B 315 AKGALQYLVPILTQTLTKQDE----------NDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYR 383 (462)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS----------SCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHhhhccHHHHHHHHhccc----------ccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHH
Confidence 234668889999888765422 1223456778889999999999998 78999999999999999999999
Q ss_pred HHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhH-HhhhhhhhHHHHHhhcc
Q 001249 395 HAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMD 470 (1114)
Q Consensus 395 ~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l~ 470 (1114)
++|+.++|.+++++. +.+.++++.++|.+.+.++|+++.||.+|+++|+++++.+++.+ ...|++.+++.+++.|+
T Consensus 384 ~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 999999999999886 45667888999999999999999999999999999999998765 35789999999988775
No 16
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=3.8e-30 Score=314.32 Aligned_cols=722 Identities=15% Similarity=0.197 Sum_probs=477.6
Q ss_pred CChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
+|.+.+.+++..+++|+++.|++|+++|+++++ +|+.+ ..+.++|.++.++.+|++|+++|++.+.++ |..+++
T Consensus 25 ~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~aw-~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~----W~~L~~ 98 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDAW-TRVDTILEFSQNMNTKYYGLQILENVIKTR----WKILPR 98 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCHH-HHHTCC---CCSHHHHHHHHHHHHHHHHHT----GGGSCH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHhh----hhhCCH
Confidence 688999999999999999999999999999999 79875 667788877889999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHhh--------chhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHh
Q 001249 99 HTQSSLKSMLLQSIQL--------ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~--------e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l 170 (1114)
+.+..+|+.+++.+.. +.++.++++++.+++.++++++| ..||++++.+.+.+++ ++..++.++.+|..+
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L 176 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-KHWPTFISDIVGASRT-SESLCQNNMVILKLL 176 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhCh-hhccHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 9999999999999875 12467889999999999999999 6899999999998864 456788899999999
Q ss_pred hhhhhh----------------hhhhhHHHHHHHHHHhhcCCCCh-----------------------------------
Q 001249 171 SQYIGD----------------TLTPHLKHLHAVFLNCLTNSNNP----------------------------------- 199 (1114)
Q Consensus 171 ~~~~~~----------------~~~~~~~~l~~~l~~~l~~~~~~----------------------------------- 199 (1114)
.+++.+ .+...++.+++.+..+++...++
T Consensus 177 ~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~ 256 (1073)
T 3gjx_A 177 SEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKF 256 (1073)
T ss_dssp HHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHT
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHh
Confidence 987432 12223344444444444332233
Q ss_pred ----HHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHH-------------hCCCHHHHHHHHHHHHHHHccc
Q 001249 200 ----DVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL-------------NNGNEATAQEALELLIELAGTE 262 (1114)
Q Consensus 200 ----~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~-------------~~~~~~~~~~~~~~l~~l~~~~ 262 (1114)
.+|..|++|+..++..- .....+.+..++..++..+...+ .+.+++.....+.+|.++++.+
T Consensus 257 L~~~~~r~aA~dcL~eIv~k~-~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~ 335 (1073)
T 3gjx_A 257 LNVPMFRNVSLKCLTEIAGVS-VSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEH 335 (1073)
T ss_dssp SSSHHHHHHHHHHHHHHHHSC-SGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 44445555555544421 00011222233333333332211 1112344555666777776666
Q ss_pred hHHHH------HHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhh--hc------cc-----------hhhhcchh
Q 001249 263 PRFLR------RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEAR--ER------AP-----------GMMRKLPQ 317 (1114)
Q Consensus 263 ~~~~~------~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~--~~------~~-----------~~~~~~~~ 317 (1114)
...+. +.+...+..++.+... .+.++-..++++|..+.+.- +. .| .......+
T Consensus 336 ~~lIe~~p~~~~~l~~~l~~ll~~s~~--~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 413 (1073)
T 3gjx_A 336 GQLLEKRLNLREALMEALHYMLLVSEV--EETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLT 413 (1073)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHH
Confidence 55443 2333455556666544 47888899999999998741 11 00 00111456
Q ss_pred hHHHHHHHHHHhhcCCCCCcccccCCCCCc-------cccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCC--
Q 001249 318 FINRLFAILMSMLLDIEDDPLWHSAETEDE-------DAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA-- 388 (1114)
Q Consensus 318 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~e-------d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~-- 388 (1114)
++.++...+...|.+++|.- ..++|+.| |-++...++...+++..++. +++......+++.+.+.+++
T Consensus 414 i~~~L~~vlI~~m~~P~ev~--i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~-l~~~~~~~i~~~~l~~~~~~~~ 490 (1073)
T 3gjx_A 414 VLSKVRLLMVSRMAKPEEVL--VVENDQGEVVREFMKDTDSINLYKNMRETLVYLTH-LDYVDTEIIMTKKLQNQVNGTE 490 (1073)
T ss_dssp HHHHHHHHHHHTCCCSCCEE--EEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhcCCCcccc--ccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCCC
Confidence 77778888888888775421 11111111 11111234556677777664 33467888888888776654
Q ss_pred CChhHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhcCCCC-----ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhH
Q 001249 389 PEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDP-----HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 462 (1114)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il 462 (1114)
.+|..++++++++|+++....+ .-+++++.+++.++.....+ .+.++...++++|++.+++..+. ++++.++
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~--~~L~~vl 568 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHW--KFLKTVV 568 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCH--HHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCH--HHHHHHH
Confidence 4699999999999999865554 34578999999998876544 45677778899999999997664 7899999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc-------ccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 463 PALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI-------LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 463 ~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-------l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
..+++.+.+ +++.|+..||.++..+++.|+... ..||+..++..+......-.+.-....+.++|.++...+
T Consensus 569 ~~L~~~m~~-~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p 647 (1073)
T 3gjx_A 569 NKLFEFMHE-THDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQT 647 (1073)
T ss_dssp HHHHHHTTC-CSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC
Confidence 999999998 899999999999999999987543 357999999999998888788888889999999999988
Q ss_pred hhh--hhhHhhhhHHHHHHHhhcc-----------CccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcC-
Q 001249 536 EHF--QKYYDAVMPFLKAILVNAT-----------DKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS- 601 (1114)
Q Consensus 536 ~~~--~~~~~~i~~~L~~~l~~~~-----------~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~- 601 (1114)
... ..++..+|+.....|+... +++...--...++|...++.++| ..|.|++..+..-++++...
T Consensus 648 ~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g-~~f~~~~~~i~~~~l~~y~~~ 726 (1073)
T 3gjx_A 648 DQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVG-HPFVIQLGRIYLDMLNVYKCL 726 (1073)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcc-hhHHHHHHHHHHHHHHHHHHH
Confidence 643 5688888888887776522 11111122346888889999999 77999988877655543210
Q ss_pred -----------CCC-CCCc-------hhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccC
Q 001249 602 -----------QME-TDDP-------TTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIED 662 (1114)
Q Consensus 602 -----------~~~-~~~~-------~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~ 662 (1114)
+.. ...+ +|..+++.+...+.. .++.......++|.+++.+-.+-...+
T Consensus 727 s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~-~~~~~~v~~~~i~pl~~~vl~dY~~~~----------- 794 (1073)
T 3gjx_A 727 SENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSR-SNDPQMVAENFVPPLLDAVLIDYQRNV----------- 794 (1073)
T ss_dssp HHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTT-CSCHHHHHHHTSHHHHHHTHHHHHHSC-----------
T ss_pred HHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHhHHHHHHHHHHHHhcCC-----------
Confidence 100 0101 222333332222211 111122233344444444311000000
Q ss_pred CCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhh----hccc--ccCCHHHHHHHHHh
Q 001249 663 SDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLV----PLLK--FYFHEEVRKAAVSA 736 (1114)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~----~~l~--~~~~~~vr~~a~~a 736 (1114)
-..|.+ ..+.++..++..++..+.|+++.+++.++ .+++ +..+++.|..-.+.
T Consensus 795 ---------------p~~r~~------evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~l 853 (1073)
T 3gjx_A 795 ---------------PAAREP------EVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLL 853 (1073)
T ss_dssp ---------------GGGCCT------HHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHH
T ss_pred ---------------cccccH------HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHH
Confidence 000100 13557888899999999999988887753 2332 22378999998888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCC
Q 001249 737 MPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (1114)
Q Consensus 737 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~ 801 (1114)
+..+...+..++-. -.++..+ .++..++.+++. +.+++-...+..+.+++..+..
T Consensus 854 l~~~~~~~f~~l~~-----l~~~~~~----~~i~~i~wa~kh-~~r~i~~~~l~~~~~ll~~~~~ 908 (1073)
T 3gjx_A 854 LQAVNSHCFPAFLA-----IPPAQFK----LVLDSIIWAFKH-TMRNVADTGLQILFTLLQNVAQ 908 (1073)
T ss_dssp HHHHHHHCGGGTTT-----SCHHHHH----HHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHc-----CCHHHHH----HHHHHHHHHcCC-CChhHHHHHHHHHHHHHHHhhc
Confidence 88887765322211 1232333 344455566644 5677777788888888887663
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=8e-30 Score=307.55 Aligned_cols=572 Identities=13% Similarity=0.147 Sum_probs=437.5
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 001249 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHL 185 (1114)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l 185 (1114)
..+++.+.+ ++..+|..++..++.++....+...|++++|.+.+.. ++++.+|..+...|+.+.+.++.. .+...+
T Consensus 13 ~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~l 88 (588)
T 1b3u_A 13 AVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVHCL 88 (588)
T ss_dssp HHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGG
T ss_pred HHHHHHhhc-ccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HHHHHH
Confidence 467888887 6899999999999999886555457999999998877 677889999999999888765432 255677
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHH
Q 001249 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1114)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 265 (1114)
++.+...+.++ +..||..|+.++..++...+. +. ..+.+++.+....+++++..|..++.++..++...+..
T Consensus 89 l~~L~~l~~~~-~~~vR~~a~~~L~~l~~~~~~----~~---~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~ 160 (588)
T 1b3u_A 89 LPPLESLATVE-ETVVRDKAVESLRAISHEHSP----SD---LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA 160 (588)
T ss_dssp HHHHHHHTTSS-CHHHHHHHHHHHHHHHTTSCH----HH---HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH
T ss_pred HHHHHHHHhCc-hHHHHHHHHHHHHHHHHHCCH----HH---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH
Confidence 78888878886 899999999999999987631 11 22344555556666778899999999999988776643
Q ss_pred HHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCC
Q 001249 266 LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETE 345 (1114)
Q Consensus 266 ~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 345 (1114)
+.+.+++.+...+. +.+..+|..+++.+..+++. .+. ..+.+.++|.+...+.+.
T Consensus 161 ---~~~~l~~~l~~l~~--d~~~~VR~~a~~~l~~l~~~---~~~-----~~~~~~l~~~l~~~~~d~------------ 215 (588)
T 1b3u_A 161 ---VKAELRQYFRNLCS--DDTPMVRRAAASKLGEFAKV---LEL-----DNVKSEIIPMFSNLASDE------------ 215 (588)
T ss_dssp ---HHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHT---SCH-----HHHHHTHHHHHHHHHTCS------------
T ss_pred ---HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHH---hcH-----HhHHHHHHHHHHHHhcCC------------
Confidence 34567777777664 45789999999999999984 221 234566777777665321
Q ss_pred CccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh
Q 001249 346 DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN 425 (1114)
Q Consensus 346 ~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~ 425 (1114)
++..+..+..++..++...+++...+.++|.+...+++++|.+|.+++.+++.++...+.. .+.+.+++.+..
T Consensus 216 -----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~ 288 (588)
T 1b3u_A 216 -----QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQN 288 (588)
T ss_dssp -----CHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHH
Confidence 1235667888999999888755667778888989999999999999999999999865431 245678899999
Q ss_pred cCCCCChhHHHHHHHHHHHhHhhhchhHH-hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHH
Q 001249 426 SFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI 504 (1114)
Q Consensus 426 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~i 504 (1114)
.++|+++.||.+|+++++.++..+++... ..+.+.++|.+...++| +++.||..++.+|..++..++.+. ..+.+
T Consensus 289 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l 364 (588)
T 1b3u_A 289 LMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD-ANQHVKSALASVIMGLSPILGKDN---TIEHL 364 (588)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC-SCHHHHHHHHTTGGGGHHHHCHHH---HHHHT
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhHhH---HHHHH
Confidence 99999999999999999999998876531 15788999999999999 899999999999999988777542 35677
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhh
Q 001249 505 VSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKF 584 (1114)
Q Consensus 505 l~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f 584 (1114)
++.+...+++.++.+|..++.+++.++...+.. .+.+.++|.+...+.. ....+|..++++++.++..+|.+.+
T Consensus 365 ~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~~~~ 438 (588)
T 1b3u_A 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAED----AKWRVRLAIIEYMPLLAGQLGVEFF 438 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHHHcCHHHH
Confidence 888889999999999999999999999877643 2456677877776532 3467899999999999999996644
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCC
Q 001249 585 RDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSD 664 (1114)
Q Consensus 585 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1114)
.+ .+++.+.....+ .+..+|..+..+++.++..+|..+ +++.++|.+.+....
T Consensus 439 ~~---~l~~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~------------------- 491 (588)
T 1b3u_A 439 DE---KLNSLCMAWLVD---HVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGD------------------- 491 (588)
T ss_dssp CH---HHHHHHHHGGGC---SSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTC-------------------
T ss_pred HH---HHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhC-------------------
Confidence 43 466666664432 234589999999999999988753 577888887765421
Q ss_pred CcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHH
Q 001249 665 DDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 744 (1114)
Q Consensus 665 ~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~ 744 (1114)
.+ ...|..++.+++.++..++.. .|.+.+++.+.+.+.+. +++||..++.+++.+....
T Consensus 492 -~~-----------------~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 492 -PN-----------------YLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp -SC-----------------HHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGS
T ss_pred -CC-----------------HHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHh
Confidence 11 235778889999999887764 37888999999998875 7899999999999987643
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 001249 745 KLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNEC 795 (1114)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~ 795 (1114)
..... .+.++|.+.+ +.++++.+++..+..++..+
T Consensus 551 ------------~~~~~---~~~~~p~l~~-l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 551 ------------DNSTL---QSEVKPILEK-LTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp ------------CHHHH---HHHHHHHHHH-HTTCSSHHHHHHHHHHHHHT
T ss_pred ------------chhhh---HHHHHHHHHH-HcCCCchhHHHHHHHHHHHh
Confidence 11111 1345555444 56788999988888877643
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.97 E-value=8.5e-29 Score=298.57 Aligned_cols=554 Identities=16% Similarity=0.184 Sum_probs=417.2
Q ss_pred CChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhc-CchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccC
Q 001249 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQ-DPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPR 95 (1114)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~-~p~~~~~~L~~il~~--~~~~~~R~~A~~~Lk~~l~~~~~~~w~~ 95 (1114)
-+...+..++..+.|+|.++|..|...|..+... .|+.....++..|.. +.++++|+.++..|.++...-.
T Consensus 7 ~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~------ 80 (588)
T 1b3u_A 7 DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVG------ 80 (588)
T ss_dssp TSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGT------
T ss_pred CCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC------
Confidence 3456799999999999999999999998875432 233322333333332 5678999999999986554310
Q ss_pred CCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhh
Q 001249 96 LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG 175 (1114)
Q Consensus 96 l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~ 175 (1114)
.++....+...|...+.+ ++..+|..++.+++.++....+...|+.++|.+.++..++++..|..+..+++.+....+
T Consensus 81 -~~~~~~~ll~~L~~l~~~-~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 81 -GPEYVHCLLPPLESLATV-EETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp -SGGGGGGGHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred -cHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 112223343444443444 689999999999999988643333567788999888888889999999999999988776
Q ss_pred hhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 001249 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1114)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l 255 (1114)
+. ..+.+++.+...++|+ ++.||..|+++++.++..... .. ..+.++..+...++++++.+|..++.++
T Consensus 159 ~~---~~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~---~~----~~~~l~~~l~~~~~d~~~~vr~~a~~~l 227 (588)
T 1b3u_A 159 SA---VKAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL---DN----VKSEIIPMFSNLASDEQDSVRLLAVEAC 227 (588)
T ss_dssp HH---HHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH---HH----HHHTHHHHHHHHHTCSCHHHHTTHHHHH
T ss_pred HH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcH---Hh----HHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 54 4678889999999997 999999999999999987631 11 2334455555667788999999999999
Q ss_pred HHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCC
Q 001249 256 IELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIED 335 (1114)
Q Consensus 256 ~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 335 (1114)
..+++..+.. .+.+.+++.+..... +.+..+|..+++.+..++..- .+ ..+.+.++|.+...+.+.
T Consensus 228 ~~l~~~~~~~--~~~~~~~~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~--~~------~~~~~~l~~~l~~~l~d~-- 293 (588)
T 1b3u_A 228 VNIAQLLPQE--DLEALVMPTLRQAAE--DKSWRVRYMVADKFTELQKAV--GP------EITKTDLVPAFQNLMKDC-- 293 (588)
T ss_dssp HHHHHHSCHH--HHHHHTHHHHHHHHT--CSSHHHHHHHHHTHHHHHHHH--CH------HHHHHTHHHHHHHHHTCS--
T ss_pred HHHHHhCCHH--HHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHh--Cc------ccchhHHHHHHHHHhCCC--
Confidence 9988765542 233455666666654 346789999999999998731 11 124456778777776421
Q ss_pred CcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCC----cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHH
Q 001249 336 DPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN----TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKV 411 (1114)
Q Consensus 336 ~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~ 411 (1114)
++..+..+..++..++..+|++ ...+.++|.+...+++++|.+|.+++.+++.++..+++.
T Consensus 294 ---------------~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 294 ---------------EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp ---------------SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred ---------------cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 1224667888999999988754 467889999999999999999999999999998876542
Q ss_pred HHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001249 412 MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1114)
Q Consensus 412 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1114)
...+.++|.+...++|+++.||.+++.+++.++..++.. .+.+.++|.+.+.+.+ +++++|..++.++..++..
T Consensus 359 --~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d-~~~~vr~~~~~~l~~l~~~ 432 (588)
T 1b3u_A 359 --NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAED-AKWRVRLAIIEYMPLLAGQ 432 (588)
T ss_dssp --HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHH
Confidence 235678888999999999999999999999999877653 3567899999999988 8999999999999999988
Q ss_pred CCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHH
Q 001249 492 CTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMEC 571 (1114)
Q Consensus 492 ~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~ 571 (1114)
++.+. +.+.+++.+...+++++..+|+.++.+++.++...+..+ +.+.++|.+...+. +....+|..++.+
T Consensus 433 ~~~~~---~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~----~~~~~~R~~a~~~ 503 (588)
T 1b3u_A 433 LGVEF---FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSG----DPNYLHRMTTLFC 503 (588)
T ss_dssp HCGGG---CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTT----CSCHHHHHHHHHH
T ss_pred cCHHH---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhh----CCCHHHHHHHHHH
Confidence 77653 346789999999999999999999999999999887653 56788888776532 2345789999999
Q ss_pred HHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhc
Q 001249 572 ISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSA 643 (1114)
Q Consensus 572 l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~ 643 (1114)
++.++..+|.+. +...+++.+.....+ .+..+|..+..+++.++..+|.++. .+.++|.+.+.+
T Consensus 504 l~~l~~~~~~~~---~~~~~~~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~~~p~l~~l~ 567 (588)
T 1b3u_A 504 INVLSEVCGQDI---TTKHMLPTVLRMAGD---PVANVRFNVAKSLQKIGPILDNSTL--QSEVKPILEKLT 567 (588)
T ss_dssp HHHHHHHHHHHH---HHHHTHHHHHHGGGC---SCHHHHHHHHHHHHHHGGGSCHHHH--HHHHHHHHHHHT
T ss_pred HHHHHHhcCHHH---HHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhchhhh--HHHHHHHHHHHc
Confidence 999999888543 566778877775442 3345899999999999988887542 256666665543
No 19
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.96 E-value=8.6e-26 Score=287.37 Aligned_cols=514 Identities=16% Similarity=0.184 Sum_probs=350.3
Q ss_pred HHHHHHHHHHcCC--ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc-cCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 22 APFETLISHLMST--SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ-RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 22 ~~l~~ll~~~~s~--d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~-~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
+++.++|+.+++| |++.|++|+++|+++++ +|+.+ ..+..+|. .+.++.+|++|+++||+.+.++ |..+++
T Consensus 11 ~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p~~~-~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~----W~~l~~ 84 (1204)
T 3a6p_A 11 EQLVKAVTVMMDPNSTQRYRLEALKFCEEFKE-KCPIC-VPCGLRLAEKTQVAIVRHFGLQILEHVVKFR----WNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-HCTTH-HHHHHHHTSTTSCHHHHHHHHHHHHHHHHHS----GGGSCH
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHh-CchHH-HHHHHHHHccCCCHHHHHHHHHHHHHHHHHh----cccCCH
Confidence 5688999999998 77889999999999998 68765 55666665 5778999999999999999987 999999
Q ss_pred HHHHHHHHHHHHHHhhc------hhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhh
Q 001249 99 HTQSSLKSMLLQSIQLE------SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e------~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~ 172 (1114)
+.+..||+.+++.+..+ ..+.+|++++.+++.|+++++| +.||++++.+.+.+++ +...++.++.+|..+++
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999864 4688999999999999999999 7899999999999876 55678999999999987
Q ss_pred hhhh--------------hhhhhHHHHHHHHHHhhcC-------------------C-----------------------
Q 001249 173 YIGD--------------TLTPHLKHLHAVFLNCLTN-------------------S----------------------- 196 (1114)
Q Consensus 173 ~~~~--------------~~~~~~~~l~~~l~~~l~~-------------------~----------------------- 196 (1114)
++.. .+...++.+++.+...+++ +
T Consensus 163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~ 242 (1204)
T 3a6p_A 163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSH 242 (1204)
T ss_dssp HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHH
Confidence 6321 0111222333222222211 0
Q ss_pred ----------------CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhH----HHHHHHHHHHHh--------CCCHHHH
Q 001249 197 ----------------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLL----PLMMRTLTESLN--------NGNEATA 248 (1114)
Q Consensus 197 ----------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~----p~ll~~l~~~~~--------~~~~~~~ 248 (1114)
.++.+|..|++||..++..-.. .+.+..++ +..++.+..... +.+.+.+
T Consensus 243 i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~---~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~ 319 (1204)
T 3a6p_A 243 ITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGK---LEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFL 319 (1204)
T ss_dssp HHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSC---HHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHH
T ss_pred HHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCC---hhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHH
Confidence 0235566777777777653221 11111222 222323333321 1134556
Q ss_pred HHHHHHHHHHHccchHHH--------HHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHH
Q 001249 249 QEALELLIELAGTEPRFL--------RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFIN 320 (1114)
Q Consensus 249 ~~~~~~l~~l~~~~~~~~--------~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 320 (1114)
+..++++..+++.....+ .+++..+++.++.+..+ .+..+...++++|..+.+... ........+++.
T Consensus 320 k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~--~~~~vs~~~l~fW~~ll~~~~--~~~~~~~~~~l~ 395 (1204)
T 3a6p_A 320 KRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTH--PSQFLRSSTQMTWGALFRHEI--LSRDPLLLAIIP 395 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHSCTT--TTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhC--ccHHhHHHHHHHHHHHHhccc--ccccHHHHHHHH
Confidence 677777777765433322 23567889999988865 377888999999999987421 000112346788
Q ss_pred HHHHHH---HHhhcCCCCCc----ccccCCCCCccc--cCC-CchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhC---
Q 001249 321 RLFAIL---MSMLLDIEDDP----LWHSAETEDEDA--GES-SNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--- 387 (1114)
Q Consensus 321 ~l~~~l---~~~l~~~~~~~----~~~~~~~~~ed~--~~~-~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--- 387 (1114)
++++.+ +..+.+++++. .|..+|.|+++| +.. .-++...+.++.++...+ ...++.+.+++.+.+.
T Consensus 396 ~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p-~~~l~~v~~~l~~~l~~~l 474 (1204)
T 3a6p_A 396 KYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP-KTSFQMAGEWLKYQLSTFL 474 (1204)
T ss_dssp HHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhhhh
Confidence 888888 44555554332 254222221111 111 123445667777776664 5566656666544332
Q ss_pred ----------------------CCChhHHHHHHHHHHHHHhhcHHHH-HH-----hHHHHHHHHHhcCCCCChhHHHHHH
Q 001249 388 ----------------------APEWQKHHAALIALAQIAEGCAKVM-VK-----NLEQVLSMVLNSFRDPHPRVRWAAI 439 (1114)
Q Consensus 388 ----------------------~~~~~~r~aal~~l~~l~~~~~~~~-~~-----~l~~i~~~l~~~l~d~~~~vr~~a~ 439 (1114)
++.|..+++....+.++.+++.... .+ .++.+++.++.. +..+|.+|..++
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~-~~~~p~l~~~~i 553 (1204)
T 3a6p_A 475 DAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNF-DTKDPLILSCVL 553 (1204)
T ss_dssp ----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHC-CCSCHHHHHHHH
T ss_pred cccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhC-CCCChHHHHHHH
Confidence 2357888999999999998875432 12 234455554332 446889999999
Q ss_pred HHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC-----------CChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHH
Q 001249 440 NAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----------QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 508 (1114)
Q Consensus 440 ~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-----------~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L 508 (1114)
.+++.+++++... ..+++.++..++..+.+. .+.++|.+||.++..+++.++. .+.||++.|...+
T Consensus 554 ~~l~~l~~~~~~~--p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~-~L~p~~~~i~~~~ 630 (1204)
T 3a6p_A 554 TNVSALFPFVTYR--PEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQ-LVLPNFDMLYNHV 630 (1204)
T ss_dssp HHHHHHGGGGGTC--GGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHH-HHGGGHHHHHHHH
T ss_pred HHHHHHHHHHhcC--chHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHH
Confidence 9999999987643 367888888888777551 1347999999999999999974 4789999999999
Q ss_pred HHHhhcCC---hhHHHHHHHHHHHHHHhhhh--hhhhhHhhhhHHHHHHHhh
Q 001249 509 LVLLQNGK---QMVQEGALTALASVADSSQE--HFQKYYDAVMPFLKAILVN 555 (1114)
Q Consensus 509 ~~~l~~~~---~~v~~~al~~l~~l~~~~~~--~~~~~~~~i~~~L~~~l~~ 555 (1114)
..++.... ..-+.....+++.++...++ ....|+..+++++.+.|.+
T Consensus 631 ~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 631 KQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 88887544 55566677788777655432 3345788999998888764
No 20
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.94 E-value=5.3e-21 Score=241.52 Aligned_cols=785 Identities=11% Similarity=0.092 Sum_probs=457.6
Q ss_pred HHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHhccc
Q 001249 60 KLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNIL 136 (1114)
Q Consensus 60 ~L~~il~~--~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e-~~~~vr~~~~~~i~~ia~~~~ 136 (1114)
.+.++|.. +++...| |-..|++. ... ++ .-..|++.+.+. .+..+|..++..+....+..+
T Consensus 6 ~l~~~L~~~~spd~~~r--Ae~~L~~~---------~~~-p~----~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w 69 (960)
T 1wa5_C 6 TVAKFLAESVIASTAKT--SERNLRQL---------ETQ-DG----FGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKW 69 (960)
T ss_dssp HHHHHHHHTTSGGGHHH--HHHHHHHH---------HTS-TT----HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHHh---------hcC-CC----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Confidence 34455543 5566677 88888874 211 22 333566666543 357899999999998887655
Q ss_pred CCC----Cch-----hhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHH
Q 001249 137 PEN----GWP-----ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALN 207 (1114)
Q Consensus 137 ~~~----~w~-----~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~ 207 (1114)
... ..+ .+-..+++.+.+++..+|.....++..|+....+ ..++.+++.+.+.++++ +...+..++.
T Consensus 70 ~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p---~~Wp~ll~~L~~~l~s~-~~~~~~~aL~ 145 (960)
T 1wa5_C 70 VDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP---DRWPTLLSDLASRLSND-DMVTNKGVLT 145 (960)
T ss_dssp BCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHTTCCSS-CTTHHHHHHH
T ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc---cchhHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 411 121 2334555555555678888888888888875322 25778899999999886 7788999999
Q ss_pred HHHHHHHhcCC----cchH----hHHHhhHHHHHHHHHHH---HhCCCHH---HH------HHHHHHHHHHH-ccchHHH
Q 001249 208 AVINFIQCLTS----SADR----DRFQDLLPLMMRTLTES---LNNGNEA---TA------QEALELLIELA-GTEPRFL 266 (1114)
Q Consensus 208 ~l~~l~~~~~~----~~~~----~~~~~l~p~ll~~l~~~---~~~~~~~---~~------~~~~~~l~~l~-~~~~~~~ 266 (1114)
++..+++.... .... ..+...+|.+++.+... +++.... .+ ..+++++..+. ...+..+
T Consensus 146 ~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~ 225 (960)
T 1wa5_C 146 VAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFF 225 (960)
T ss_dssp HHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 99999886532 1111 12344566555554332 4433221 22 22444444433 2336667
Q ss_pred HHHHHHHHHHHHHHhccC------C--cc-----hhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCC
Q 001249 267 RRQLVDVVGSMLQIAEAE------S--LE-----EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDI 333 (1114)
Q Consensus 267 ~~~~~~l~~~ll~~~~~~------~--~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 333 (1114)
..++..+++.+.+++... + .+ +.+|..+++++..+++. .+. .+.++++.+++.+++.+...
T Consensus 226 ~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~---~~~---~f~~~~~~~~~~~~~~l~~~ 299 (960)
T 1wa5_C 226 EDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTR---YED---VFGPMINEFIQITWNLLTSI 299 (960)
T ss_dssp HHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHH---CHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHhc
Confidence 778888888777765321 0 01 24678889999888873 333 23467778888777766532
Q ss_pred CCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC---------CcchHHHH-HHHHHhh-----------------
Q 001249 334 EDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG---------NTIVPVAS-EQLPAYL----------------- 386 (1114)
Q Consensus 334 ~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~---------~~~~~~l~-~~l~~~l----------------- 386 (1114)
.+. + . ....+..++..+...... ..+++.++ +.+...+
T Consensus 300 ~~~--~------~-------~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~ 364 (960)
T 1wa5_C 300 SNQ--P------K-------YDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEY 364 (960)
T ss_dssp CSC--T------T-------SHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHH
T ss_pred CCC--c------C-------cHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHH
Confidence 110 0 0 011223333333222110 12223233 2222211
Q ss_pred ------CCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC------CCChhHHHHHHHHHHHhHhhhc--h-
Q 001249 387 ------AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR------DPHPRVRWAAINAIGQLSTDLG--P- 451 (1114)
Q Consensus 387 ------~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~--~- 451 (1114)
.+..|..|.+|..++..++...++. .++.+++.+...+. +++++.|++|+.++|.+++... .
T Consensus 365 i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~---v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~ 441 (960)
T 1wa5_C 365 IRRDLEGSDTDTRRRACTDFLKELKEKNEVL---VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNA 441 (960)
T ss_dssp HHHHHHC----CHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTT
T ss_pred HHhccCcccccCcHHHHHHHHHHHHHHcchh---HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccC
Confidence 1234678999999999999887753 34455555554444 6788999999999999986531 1
Q ss_pred hHHhh-----hhhhh-HHHHHhhccCCC---ChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHH
Q 001249 452 DLQNQ-----FHPQV-LPALAGAMDDFQ---NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEG 522 (1114)
Q Consensus 452 ~~~~~-----~~~~i-l~~l~~~l~~~~---~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~ 522 (1114)
.. .. .+..+ ...++..+.+ + ++.+|..||++++.+.+.+.+ .++..+++.++..+.+++..||..
T Consensus 442 ~~-~~~~~~~~l~~~l~~~v~p~l~~-~~~~~p~vr~~a~~~lg~~~~~~~~----~~l~~~l~~l~~~L~d~~~~V~~~ 515 (960)
T 1wa5_C 442 GV-SSTNNLLNVVDFFTKEIAPDLTS-NNIPHIILRVDAIKYIYTFRNQLTK----AQLIELMPILATFLQTDEYVVYTY 515 (960)
T ss_dssp BC-CCBCTTCCHHHHHHHHTHHHHHC-SSCSCHHHHHHHHHHHHHTGGGSCH----HHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred Cc-ccccccccHHHHHHHHhHHHhcC-CCCCCceehHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCChhHHHH
Confidence 11 00 12222 2334455566 5 899999999999999987642 478899999999999988999999
Q ss_pred HHHHHHHHHHhh-----------hhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHH
Q 001249 523 ALTALASVADSS-----------QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (1114)
Q Consensus 523 al~~l~~l~~~~-----------~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i 591 (1114)
|+.++..++... +..+.||++.+++.|...+....+.. .
T Consensus 516 A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~---------------------~--------- 565 (960)
T 1wa5_C 516 AAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSP---------------------E--------- 565 (960)
T ss_dssp HHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCH---------------------H---------
T ss_pred HHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCC---------------------C---------
Confidence 999999988742 34567777777777777664321000 0
Q ss_pred HHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchh
Q 001249 592 MEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETI 671 (1114)
Q Consensus 592 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1114)
+ ....+.++.+++.++..+++++.||.+.+++.+...+...
T Consensus 566 -----~---------~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~------------------------- 606 (960)
T 1wa5_C 566 -----K---------LAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIM------------------------- 606 (960)
T ss_dssp -----H---------HTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHH-------------------------
T ss_pred -----c---------ccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-------------------------
Confidence 0 0012355666777777777778888777777666554210
Q ss_pred hcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcC
Q 001249 672 TLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKG 751 (1114)
Q Consensus 672 ~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~ 751 (1114)
.++..+...+...+++++.++...
T Consensus 607 -------------------------------------------------~~~~~~~~~~~~~~e~l~~l~~~~------- 630 (960)
T 1wa5_C 607 -------------------------------------------------AKNPSNPRFTHYTFESIGAILNYT------- 630 (960)
T ss_dssp -------------------------------------------------TTSCCCHHHHHHHHHHHHHHHHTS-------
T ss_pred -------------------------------------------------HhCCCCcHHHHHHHHHHHHHHhcC-------
Confidence 000112233333445544444320
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001249 752 LAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAE 831 (1114)
Q Consensus 752 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 831 (1114)
.++....+.+.++|.+...+..+.
T Consensus 631 -----~~~~~~~~~~~~~p~~~~iL~~~~--------------------------------------------------- 654 (960)
T 1wa5_C 631 -----QRQNLPLLVDSMMPTFLTVFSEDI--------------------------------------------------- 654 (960)
T ss_dssp -----CGGGHHHHHHHHHHHHHHHHHTTC---------------------------------------------------
T ss_pred -----CcchHHHHHHHHHHHHHHHHHhhh---------------------------------------------------
Confidence 111223333444443333322110
Q ss_pred hhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHh--hhhcCCCCHHHHHHHHHHHHHH
Q 001249 832 RAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLT--PMWGKDKTAEERRIAICIFDDV 909 (1114)
Q Consensus 832 ~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~--~~l~~~~~~~~r~~a~~~l~~~ 909 (1114)
. +....+.++++.+.+.. ..+.+++..++|.+. ..++... .......++..+
T Consensus 655 ----~------------------~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~~ 708 (960)
T 1wa5_C 655 ----Q------------------EFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKG---NIPAVTRLLKSF 708 (960)
T ss_dssp ----T------------------TTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT---THHHHHHHHHHH
T ss_pred ----H------------------hhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC---CchhHHHHHHHH
Confidence 0 01111344444444444 446666666667666 4443221 112233444444
Q ss_pred HhHhhhhhhhhhHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCC-chHHHHHHHHHHHHhhcCCCCCChhhhhhHH
Q 001249 910 AEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSV-VKPLVGEALSRLNVVIRHPNALQPENLMAYD 988 (1114)
Q Consensus 910 ~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~-~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~ 988 (1114)
+...+..+.. ++.++..+.+.+.+... +..|+..+|.++.+.+.. +.||++.+++.+...++.... ...+.
T Consensus 709 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~-----~~~~~ 780 (960)
T 1wa5_C 709 IKTDSSIFPD-LVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKT-----ERYVK 780 (960)
T ss_dssp HHHHGGGCSC-SHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCC-----HHHHH
T ss_pred HHhChHHHHH-HHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCc-----HhHHH
Confidence 4443332221 24455555555555443 488999999999999977 999999999999999876521 22232
Q ss_pred HHHHHHHHHHhh-cCC-------CCC----HhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcC--CcccCcCcCchh
Q 001249 989 NAVSALGKICQF-HRD-------SID----AAQVVPAWLNCLPIKGDLIEAKIVHEQLCSMVERSD--SDLLGPNHQYLP 1054 (1114)
Q Consensus 989 na~~al~~l~~~-~~~-------~~~----~~~~~~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~--~~~~~~~~~~l~ 1054 (1114)
..+..++.++.. +++ .+. ..-+...|+..+....+..+++.++.+++.++.... |.... .+.+
T Consensus 781 ~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~~~~~~~~~---~~~~ 857 (960)
T 1wa5_C 781 KLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYP---TLIS 857 (960)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSCHHHHHHCG---GGHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHHHHHHHHHHHHhcccccchhHH---HHHH
Confidence 333333333322 221 111 112333788887765667899999999999996540 21111 2466
Q ss_pred HHHHHHHHHhcCC-------------------------------------CCCC----HHHHHHHHHHHHHHHhhCChhh
Q 001249 1055 KIVSVFAEILCGK-------------------------------------DLAT----EQTLSRIVNLLKQLQQTLPPAT 1093 (1114)
Q Consensus 1055 ~i~~~~~~~l~~~-------------------------------------~~~~----~~~~~~~~~~l~~~~~~~~~~~ 1093 (1114)
.++..+...+.+. +... .+.+.-+.+.++.+.+.+|+.
T Consensus 858 ~~~~~i~~l~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~L~~~~~~~~dp~~~i~~~~d~~~~~~~~l~~~~~~~~~~- 936 (960)
T 1wa5_C 858 STMNSIIETASSQSIANLKNDYVDLDNLEEISTFGSHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNT- 936 (960)
T ss_dssp HHHHHHHHHHHSCSTTCSCCSCC-----CCCCCTTCCCCCCGGGCCCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTTSC-
T ss_pred HHHHHHHHHHhCCcccccCCccccccccccccccchHHHHHHhCCCCCCCChhhhcCcCCHHHHHHHHHHHHhccCCch-
Confidence 6777665544210 0101 277888899999999999988
Q ss_pred HHHH-HhcCCHHHHHHHHhhh
Q 001249 1094 LAST-WSSLQPQQQLALQSIL 1113 (1114)
Q Consensus 1094 ~~~~-~~~l~~~~~~~l~~~~ 1113 (1114)
++++ .++|++++|+.|++++
T Consensus 937 ~~~l~~~~l~~~~~~~l~~~~ 957 (960)
T 1wa5_C 937 FLNTILPQLTQENQVKLNQLL 957 (960)
T ss_dssp HHHHHGGGSCHHHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHHHH
Confidence 9998 7799999999999987
No 21
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.89 E-value=1.8e-18 Score=219.86 Aligned_cols=735 Identities=9% Similarity=0.055 Sum_probs=428.9
Q ss_pred cCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHH
Q 001249 153 SSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLM 232 (1114)
Q Consensus 153 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~l 232 (1114)
.+++...|..|-..|..+-+. ++ ..+.+...|..+.+..+|..|+.+|.+.+...-.....+....+-..+
T Consensus 17 ~~~d~~~r~~A~~~L~~~~~~-p~--------~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~l 87 (971)
T 2x1g_F 17 YRSNSQNQAITHEWLTDAEAS-PQ--------AWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKI 87 (971)
T ss_dssp HTSTTTC----CHHHHHTTTS-TH--------HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcC-HH--------HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHH
Confidence 345666676676666654322 11 112233334333488999999999999887522111111122233356
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCC----cchhHHHHHHHHHHHHHHh-hhc
Q 001249 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES----LEEGTRHLAIEFVITLAEA-RER 307 (1114)
Q Consensus 233 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~----~~~~vr~~a~~~l~~l~~~-~~~ 307 (1114)
++.+.... .+...+|...+.++..++..... .-+++++.+...+...+ .+...+..++++|..+++. ..+
T Consensus 88 l~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~ 162 (971)
T 2x1g_F 88 LESIVRFA-GGPKIVLNRLCISLGAYIVHMLG----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVI 162 (971)
T ss_dssp HHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTC----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHHHccc----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhcc
Confidence 66665543 23577889999999998876542 22334444444432210 1345788899999999863 111
Q ss_pred cchh-----hhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHH--HcCCCcchHHHHH
Q 001249 308 APGM-----MRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI--ALGGNTIVPVASE 380 (1114)
Q Consensus 308 ~~~~-----~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~--~~~~~~~~~~l~~ 380 (1114)
.+.. ...+...++.+++.+.+.+....... .+++.+.....+.+|+..+.. ..+. .....+++
T Consensus 163 ~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~---------~~~~~~~~~~~al~~l~~~~~~~~ip~-~~~~~ll~ 232 (971)
T 2x1g_F 163 HTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRV---------WDAEAYSNMNRAVKCVGTWIKNIGYTI-EGCVTITA 232 (971)
T ss_dssp CCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSC---------CCHHHHHHHHHHHHHHHHHHHHSCCCG-GGHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC---------CCccchhHHHHHHHHHHHHHhhCCcCc-cccccHHH
Confidence 1100 01122344556666655554321100 000011234456666666655 3442 25556666
Q ss_pred HHHHhh----------------CCCChhHHHHHHHHHHHHHhhcH-----HHHHHhHHHHHH---HHHhcCCCCC---hh
Q 001249 381 QLPAYL----------------AAPEWQKHHAALIALAQIAEGCA-----KVMVKNLEQVLS---MVLNSFRDPH---PR 433 (1114)
Q Consensus 381 ~l~~~l----------------~~~~~~~r~aal~~l~~l~~~~~-----~~~~~~l~~i~~---~l~~~l~d~~---~~ 433 (1114)
.+.. + .+++...|.+|+.++..+.+... ..+...++.++. .+...+.+.+ ..
T Consensus 233 ~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~ 311 (971)
T 2x1g_F 233 VLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNED 311 (971)
T ss_dssp HHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSH
T ss_pred HHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchH
Confidence 6554 3 11457889999999999987432 222233333332 2222334444 25
Q ss_pred HHHHHHHHHHHhHhhhchhHH----------hhhhhhhHHHHHhhccC----CCChhHHHHHHHHHHHhhhcC-------
Q 001249 434 VRWAAINAIGQLSTDLGPDLQ----------NQFHPQVLPALAGAMDD----FQNPRVQAHAASAVLNFSENC------- 492 (1114)
Q Consensus 434 vr~~a~~~l~~l~~~~~~~~~----------~~~~~~il~~l~~~l~~----~~~~~v~~~a~~al~~l~~~~------- 492 (1114)
.....+..+..+++.....+. ..++..+++.++..... ..+.++...++.++..+++..
T Consensus 312 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~ 391 (971)
T 2x1g_F 312 IIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDE 391 (971)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhccccc
Confidence 666667777777654332221 24566778887776532 136788899999988887622
Q ss_pred C----cccccCchHHHHHHHHHHhhcCC---------------hhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHH
Q 001249 493 T----PEILTPYLDGIVSKLLVLLQNGK---------------QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 553 (1114)
Q Consensus 493 ~----~~~l~~~l~~il~~L~~~l~~~~---------------~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l 553 (1114)
. ...+.|++..+++.++..+.-++ ...|..+..++..++...++ ..++.+++.+.+.+
T Consensus 392 ~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~---~~l~~~~~~l~~~l 468 (971)
T 2x1g_F 392 QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND---YILEILAAMLDEAI 468 (971)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT---HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHH
Confidence 1 12345777888888777663221 13566677777777766553 34555666666655
Q ss_pred hhcc-CccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccch
Q 001249 554 VNAT-DKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM 632 (1114)
Q Consensus 554 ~~~~-~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 632 (1114)
.... ++....-+..++-+++.++..+.. ...++++.+++.+..+... +.+..+|..++.++++++..++.+. .|+
T Consensus 469 ~~~~~~~~~w~~~eaal~~l~~iae~~~~-~~~~~l~~l~~~l~~l~~~--d~~~~vr~~a~~~l~~~~~~l~~~~-~~l 544 (971)
T 2x1g_F 469 ADLQRHPTHWTKLEACIYSFQSVAEHFGG-EEKRQIPRLMRVLAEIPYE--KLNVKLLGTALETMGSYCNWLMENP-AYI 544 (971)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTT--TSCHHHHHHHHHHHHHTHHHHC-----CH
T ss_pred HhccCCCCcHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHhcCcc--ccCHHHHHHHHHHHHHHHHHHhcCH-HHH
Confidence 4311 123455677788889988876653 3357778888855444321 1233488899999999999887665 799
Q ss_pred hhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHH
Q 001249 633 SVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQ 712 (1114)
Q Consensus 633 ~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~ 712 (1114)
+.+++.+++.+. +. .+..|+.++..+++.++..+.||+++
T Consensus 545 ~~vl~~l~~~l~--~~--------------------------------------v~~~A~~al~~l~~~~~~~l~p~~~~ 584 (971)
T 2x1g_F 545 PPAINLLVRGLN--SS--------------------------------------MSAQATLGLKELCRDCQLQLKPYADP 584 (971)
T ss_dssp HHHHHHHHHHHH--SS--------------------------------------CHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--hH--------------------------------------HHHHHHHHHHHHHHHHHHhccccHHH
Confidence 999999998882 21 13568889999999999999999999
Q ss_pred HHHHhhhccccc-CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCC-cH---HHHHH
Q 001249 713 VAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEP-DT---EICAS 787 (1114)
Q Consensus 713 ~~~~l~~~l~~~-~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~---~~~~~ 787 (1114)
++..+...+... .....+..+.++++.++.... ......++..++..++..+.+...... +. .....
T Consensus 585 ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~--------~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~ 656 (971)
T 2x1g_F 585 LLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR--------PEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIF 656 (971)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC--------TTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 999998888753 357888999999998876420 000122333444444443333333321 22 23445
Q ss_pred HHHHHHHHHHHhCCCCC--------HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHH
Q 001249 788 MLDSLNECIQISGPLLD--------EGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQ 859 (1114)
Q Consensus 788 ~l~~l~~~l~~~~~~~~--------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~ 859 (1114)
.+..+..++..+++... ++.+.++++.+++++...+... . .+..+.+.
T Consensus 657 ~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~---------~---------------~~~~v~e~ 712 (971)
T 2x1g_F 657 RLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMW---------V---------------EEIDVLEA 712 (971)
T ss_dssp HHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHT---------T---------------TCHHHHHH
T ss_pred HHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhc---------c---------------ccHHHHHH
Confidence 66677777777665322 2234455566666555443210 0 12356777
Q ss_pred HHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhh------hhhhhHhHHHHHHHhcc
Q 001249 860 VGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA------ALKYYETYLPFLLEACN 933 (1114)
Q Consensus 860 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~------~~~~~~~i~~~ll~~l~ 933 (1114)
++.+++.++..+|..+.||+..+++.+...++... ...++.+++.++..+|.. +.+.+..+...++..+.
T Consensus 713 ~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~----~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 788 (971)
T 2x1g_F 713 ACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRC----CAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFE 788 (971)
T ss_dssp HHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--C----CHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999887664322 245788999998877653 22344444444444443
Q ss_pred C-------CChhHHhhhhHHHHHHHhhcCCCch--HH-HHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhc
Q 001249 934 D-------ENQDVRQAAVYGLGVCAEFGGSVVK--PL-VGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFH 1001 (1114)
Q Consensus 934 ~-------~~~~vr~~a~~~lg~l~~~~~~~~~--~~-~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~ 1001 (1114)
. .+|++++..+..++.+..+++..+. |. ++.+++.....+..++ ..+...++..+.+++...
T Consensus 789 ~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~------~~~~~s~~~fl~~~i~~~ 860 (971)
T 2x1g_F 789 STPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPE------SGAIRNSIQFLTHFVMQS 860 (971)
T ss_dssp SCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSC------SSHHHHHHHHHHHHHHHH
T ss_pred cccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHHhcC
Confidence 3 3789999999999999999987665 67 8888888888886432 334455667777766654
No 22
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.89 E-value=9.7e-18 Score=213.44 Aligned_cols=716 Identities=12% Similarity=0.099 Sum_probs=422.9
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhc-CCChhhHHHHHHHHHHhhhhhhhhhhh-----h
Q 001249 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVS-SDSVKLQESAFLIFAQLSQYIGDTLTP-----H 181 (1114)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~-~~~~~~r~~al~~l~~l~~~~~~~~~~-----~ 181 (1114)
+++.+...+++..|+.+-..+..+-+. | +.|+- +...+. +.+..+|..|+.+|...+......+.+ .
T Consensus 29 ~l~~l~~~~~~~~r~~A~~~L~~~~~~--p-~~~~~----~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 101 (963)
T 2x19_B 29 ALHQLYYDPNIENKNLAQKWLMQAQVS--P-QAWHF----SWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESL 101 (963)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHS--T-THHHH----HHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcC--H-HHHHH----HHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHH
Confidence 344433346888899888888876552 3 45654 333443 567889999999999888764333321 2
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhC-----CCHHHHHHHHHHHH
Q 001249 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-----GNEATAQEALELLI 256 (1114)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~-----~~~~~~~~~~~~l~ 256 (1114)
-+.+++.+.+. .+. +..+|.....++..++...- ..-||.++..+.+.+++ +++..+..++.+|.
T Consensus 102 r~~ll~~l~~~-~~~-~~~ir~kl~~~la~i~~~~~--------p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 102 KAQLFTQITRF-ASG-SKIVLTRLCVALASLALSMM--------PDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLT 171 (963)
T ss_dssp HHHHHHHHHHT-TTS-CHHHHHHHHHHHHHHHHHHT--------TTTSTTHHHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCC-CHHHHHHHHHHHHHHHHHhC--------ccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 23344444442 223 57899999999999987631 11234455555555543 25556677777777
Q ss_pred HHHccch-------------HHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHH
Q 001249 257 ELAGTEP-------------RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLF 323 (1114)
Q Consensus 257 ~l~~~~~-------------~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 323 (1114)
.+.+... ..+..+++.+++.+..++.....+..++..+++++..
T Consensus 172 ~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~----------------------- 228 (963)
T 2x19_B 172 VLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSS----------------------- 228 (963)
T ss_dssp HHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHH-----------------------
T ss_pred hCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH-----------------------
Confidence 6664210 0111233333333333332221111233333333322
Q ss_pred HHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcch--HHHHHHHHHhhCCCChhHHHHHHHHH
Q 001249 324 AILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIV--PVASEQLPAYLAAPEWQKHHAALIAL 401 (1114)
Q Consensus 324 ~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~~~~~~~r~aal~~l 401 (1114)
... .+ .... +.+++.+.+.+. +|..|.+|+.++
T Consensus 229 -----------------------------------------wi~-~~-~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l 263 (963)
T 2x19_B 229 -----------------------------------------WVQ-LE-VPLQDCEALIQAAFAALQ--DSELFDSSVEAI 263 (963)
T ss_dssp -----------------------------------------HHT-SS-CCGGGTHHHHHHHHHHTT--STTTHHHHHHHH
T ss_pred -----------------------------------------HHc-CC-CCcccchHHHHHHHHHhC--CchHHHHHHHHH
Confidence 221 11 1111 333343333332 455666666666
Q ss_pred HHHHhhcH-HHHHHhHHHHHHHHHh-------cCCCCChhHHHHHHHHHHHhHhhhchhHH-----hhhhhhhHHHHHhh
Q 001249 402 AQIAEGCA-KVMVKNLEQVLSMVLN-------SFRDPHPRVRWAAINAIGQLSTDLGPDLQ-----NQFHPQVLPALAGA 468 (1114)
Q Consensus 402 ~~l~~~~~-~~~~~~l~~i~~~l~~-------~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~~~il~~l~~~ 468 (1114)
..+..... ....+++..+++.++. .+.+.+.......+..+..+++.....+. ..++..+++.++..
T Consensus 264 ~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~ 343 (963)
T 2x19_B 264 VNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFC 343 (963)
T ss_dssp HHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHH
Confidence 66655321 1111222233332222 12223334444555666666654333331 24556777777766
Q ss_pred ccC----CCChhHHHHHHHHHHHhhhcCC----------cccccCchHHHHHHHHHHhhcCCh---------------hH
Q 001249 469 MDD----FQNPRVQAHAASAVLNFSENCT----------PEILTPYLDGIVSKLLVLLQNGKQ---------------MV 519 (1114)
Q Consensus 469 l~~----~~~~~v~~~a~~al~~l~~~~~----------~~~l~~~l~~il~~L~~~l~~~~~---------------~v 519 (1114)
... ..+..+...++..+..+++... ...+.|++..+++.++..+..+.. ..
T Consensus 344 ~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~ 423 (963)
T 2x19_B 344 TGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIY 423 (963)
T ss_dssp HTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHH
T ss_pred HcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHH
Confidence 653 1245667777777777776321 123457777788877776643211 23
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHh
Q 001249 520 QEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQ 599 (1114)
Q Consensus 520 ~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~ 599 (1114)
|..+..++..++...+.. .++.+++.+...++...+......+..++-+++.++..+. +...+++..+++.+..+.
T Consensus 424 r~~~~~~L~~~~~~~~~~---~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~-~~~~~~l~~l~~~l~~l~ 499 (963)
T 2x19_B 424 RVDISDTLMYVYEMLGAE---LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETID-VNYSDVVPGLIGLIPRIS 499 (963)
T ss_dssp HHHHHHHHHHHHHHHTHH---HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCC-SSCCSHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHccHH---HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcC-chhhHHHHHHHHHHHhCC
Confidence 455556666666555533 4455566666665432223345667778889999887765 334567777777554432
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceee
Q 001249 600 GSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIG 679 (1114)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1114)
. .+..++..++.++++++..++.+. +|++.+++.+++.+.. +
T Consensus 500 ~----~~~~vr~~~~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l~~-~-------------------------------- 541 (963)
T 2x19_B 500 I----SNVQLADTVMFTIGALSEWLADHP-VMINSVLPLVLHALGN-P-------------------------------- 541 (963)
T ss_dssp C----CSHHHHHHHHHHHHHTHHHHHHCH-HHHTTTHHHHHHHTTC-G--------------------------------
T ss_pred C----CcHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHhCC-c--------------------------------
Confidence 2 223478888899999988876543 7899999999988831 1
Q ss_pred ecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhccccc-CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCH
Q 001249 680 IKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNE 758 (1114)
Q Consensus 680 v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~ 758 (1114)
..+..|+.++..++..++..+.||++++++.+...+... .....|..+.++++.++... ..
T Consensus 542 ------~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~------------~~ 603 (963)
T 2x19_B 542 ------ELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL------------QV 603 (963)
T ss_dssp ------GGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS------------CH
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC------------CH
Confidence 013578889999999999999999999999988887642 35688899999999887532 12
Q ss_pred HHHHHHHHHHHHHHHHHHcc----CCcHH---HHHHHHHHHHHHHHHhCCCCC-----------------HHHHHHHHHH
Q 001249 759 SYVKQLSDFIIPALVEALHK----EPDTE---ICASMLDSLNECIQISGPLLD-----------------EGQVRSIVDE 814 (1114)
Q Consensus 759 ~~~~~~~~~i~~~l~~~~~~----~~~~~---~~~~~l~~l~~~l~~~~~~~~-----------------~~~~~~~~~~ 814 (1114)
+...++++.+++.+...+.. ..+.+ .+...++++..+.+.++...+ +..+..+++.
T Consensus 604 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (963)
T 2x19_B 604 EEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQ 683 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHH
Confidence 34456666666666665542 22333 233567777777777764321 1224456666
Q ss_pred HHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCC
Q 001249 815 IKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK 894 (1114)
Q Consensus 815 l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 894 (1114)
+++.+...+.... .+..+.+.++.+++.++..+|+.+.|++..+++.++......+
T Consensus 684 ~~~~~~~~l~~~~------------------------~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 739 (963)
T 2x19_B 684 VFQLIQKVLSKWL------------------------NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP 739 (963)
T ss_dssp HHHHHHHHHHHHT------------------------TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcc------------------------CchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCC
Confidence 6666555433110 0124666788999999999999999999988887765443222
Q ss_pred CHHHHHHHHHHHHHHHhHhh--hhhhhhhHhHHHHHHHh----cc-C--CChhHHhhhhHHHHHHHhhcCCCch--HH-H
Q 001249 895 TAEERRIAICIFDDVAEQCR--EAALKYYETYLPFLLEA----CN-D--ENQDVRQAAVYGLGVCAEFGGSVVK--PL-V 962 (1114)
Q Consensus 895 ~~~~r~~a~~~l~~~~~~~~--~~~~~~~~~i~~~ll~~----l~-~--~~~~vr~~a~~~lg~l~~~~~~~~~--~~-~ 962 (1114)
....+.+++.++...| +...++++.++..++.. +. + ++|++|...+..++.++.+.+..+. |. +
T Consensus 740 ----~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~ 815 (963)
T 2x19_B 740 ----QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDV 815 (963)
T ss_dssp ----CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCH
T ss_pred ----ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccH
Confidence 1235566777766332 22233444444444333 33 3 4699999999999999999886553 44 7
Q ss_pred HHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhhcC
Q 001249 963 GEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHR 1002 (1114)
Q Consensus 963 ~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~ 1002 (1114)
..+++.+...+..+ +..+...++..+..++...+
T Consensus 816 ~~i~~~~~~~l~~~------~~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 816 KAVFQCAVLALKFP------EAPTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHTTCS------CHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHcCCC------CHHHHHHHHHHHHHHHhcCC
Confidence 88888888888654 46788889999999887654
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.82 E-value=7.9e-18 Score=195.79 Aligned_cols=405 Identities=12% Similarity=0.072 Sum_probs=295.9
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCC--ChhhHHHHHHHHHHhhhhh-----------
Q 001249 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQYI----------- 174 (1114)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~--~~~~r~~al~~l~~l~~~~----------- 174 (1114)
+++.+.+ ++..+|+.+...+..+... .-|+++..+.+.+.++ +..+|..|...|+.+....
T Consensus 6 ~L~~~~s-~d~~~r~~Ae~~L~~~~~~-----~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 6 ILEKTVS-PDRLELEAAQKFLERAAVE-----NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHHTTC-SCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhh-----ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 4455554 7889999999888876542 1356666676666554 6789999999999887432
Q ss_pred hhhhhh-hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC--CHHHHHHH
Q 001249 175 GDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG--NEATAQEA 251 (1114)
Q Consensus 175 ~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~--~~~~~~~~ 251 (1114)
...+.+ ....+...++..+.++ +..+ ..+..+++.++.... + ...+|.++..+.+.++++ ++..+..+
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~-~~~v-~~~~~~i~~ia~~~~----~---~~~w~~ll~~L~~~l~~~~~~~~~r~~a 150 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTE-TYRP-SSASQCVAGIACAEI----P---VNQWPELIPQLVANVTNPNSTEHMKEST 150 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCC-CSSS-CSHHHHHHHHHHHHG----G---GTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCC-Cchh-hHHHHHHHHHHHHhc----c---ccccHHHHHHHHHHhccCCCCHHHHHHH
Confidence 111221 3445666777888886 6777 888899998887631 1 012345555666666677 88999999
Q ss_pred HHHHHHHHccc-hHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhh
Q 001249 252 LELLIELAGTE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSML 330 (1114)
Q Consensus 252 ~~~l~~l~~~~-~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 330 (1114)
+.+|..+++.. +..+.++++.+++.+...+.+.+.+..+|..|+.++..++.. ...... ...+...+++.+...+
T Consensus 151 l~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~---~~~~~~-~~~~~~~l~~~l~~~~ 226 (462)
T 1ibr_B 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF---TKANFD-KESERHFIMQVVCEAT 226 (462)
T ss_dssp HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT---THHHHT-SHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH---HHHhhh-hhHHHHHHHHHHHHhc
Confidence 99999999865 666788888999999998865433678999999999887652 110000 0011122344444332
Q ss_pred cCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC--CcchH-HHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 001249 331 LDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG--NTIVP-VASEQLPAYLAAPEWQKHHAALIALAQIAEG 407 (1114)
Q Consensus 331 ~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~--~~~~~-~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 407 (1114)
.+. +...+..+.+++..++...+. ...++ .+++.+...+.+.+..+|..++..++.+++.
T Consensus 227 ~~~-----------------~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 227 QCP-----------------DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp TCS-----------------SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred CCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 110 112455677888888877652 13455 6777777777888999999999999988764
Q ss_pred c---------------------HHHHHHhHHHHHHHHHhcCCC-------CChhHHHHHHHHHHHhHhhhchhHHhhhhh
Q 001249 408 C---------------------AKVMVKNLEQVLSMVLNSFRD-------PHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1114)
Q Consensus 408 ~---------------------~~~~~~~l~~i~~~l~~~l~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1114)
. ...+.++++.++|.++..+.+ .++.+|.+|+.+|+.++..++. ...+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~~~ 365 (462)
T 1ibr_B 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVP 365 (462)
T ss_dssp HHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----THHH
T ss_pred HHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HHHH
Confidence 2 123455678889988887743 4578999999999999998874 4567
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhh-
Q 001249 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF- 538 (1114)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~- 538 (1114)
.++|.+...+.+ +++++|.+|+.+++.+++.+.++.+.++++.+++.+...++++++.||..|+.+++.++...+..+
T Consensus 366 ~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~ 444 (462)
T 1ibr_B 366 HVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI 444 (462)
T ss_dssp HHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCC
T ss_pred HHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccc
Confidence 899999999998 899999999999999999877566788999999999999999999999999999999999988765
Q ss_pred -hhhHhhhhHHHHHHH
Q 001249 539 -QKYYDAVMPFLKAIL 553 (1114)
Q Consensus 539 -~~~~~~i~~~L~~~l 553 (1114)
.+|++.+++.|...+
T Consensus 445 ~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 445 NDVYLAPLLQCLIEGL 460 (462)
T ss_dssp STTTHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHh
Confidence 478888888877644
No 24
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.80 E-value=7.6e-19 Score=181.10 Aligned_cols=213 Identities=14% Similarity=0.282 Sum_probs=186.0
Q ss_pred cchHHHHHHHHHhhCCCChhHHHHHHHHHHH-HHhhcHHHH--HHhHHHHHHHHHhcC-CCCChhHHHHHHHHHHHhHhh
Q 001249 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQ-IAEGCAKVM--VKNLEQVLSMVLNSF-RDPHPRVRWAAINAIGQLSTD 448 (1114)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~-l~~~~~~~~--~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~ 448 (1114)
.+++.+-+-+.+.++|++|+.|.+|+..|+. +++++++.. ...+..++..+.+.+ +|.|+.||..|+.+++.+++.
T Consensus 12 ~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~ 91 (249)
T 2qk1_A 12 TILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK 91 (249)
T ss_dssp CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 3444444456677889999999999999999 998877544 345568899999999 899999999999999999999
Q ss_pred hc-hhHHh-hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHH
Q 001249 449 LG-PDLQN-QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTA 526 (1114)
Q Consensus 449 ~~-~~~~~-~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~ 526 (1114)
++ +.+ . +|...++|.++..+.| ..+.|+.++..++..+++.+++....+|++.+++.|+..+++.++.+|..++.+
T Consensus 92 l~~~~f-~~~y~~~llp~ll~~l~d-kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~ 169 (249)
T 2qk1_A 92 LKTPGF-SKDYVSLVFTPLLDRTKE-KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQL 169 (249)
T ss_dssp HCTTTS-CHHHHHHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred cccccc-cHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 98 888 6 8999999999999999 889999999999999999987654335599999999999999999999999999
Q ss_pred HHHHHHhhh---hhhhhhH-hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHH
Q 001249 527 LASVADSSQ---EHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (1114)
Q Consensus 527 l~~l~~~~~---~~~~~~~-~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i 591 (1114)
|+.++...+ ..|.+|+ +.++|.+...+.. ....+|..|++|++.+.+.+|++.|.||++.+
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D----~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND----TQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999887 5688999 9999999999843 35679999999999999999988899998775
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.78 E-value=6.1e-17 Score=187.39 Aligned_cols=369 Identities=16% Similarity=0.136 Sum_probs=254.8
Q ss_pred CCchhh---HHHHHHhhcCCChhhHHHHHHHHHHhhhh-hhhhhhhhHH--HHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001249 139 NGWPEL---LPFMFQCVSSDSVKLQESAFLIFAQLSQY-IGDTLTPHLK--HLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (1114)
Q Consensus 139 ~~w~~l---l~~l~~~~~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~~--~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 212 (1114)
..|++. ++.+++.++++++..|..|+..|..++.. ..+.....+. .+++.+.+.+.++.++.+|..|+.++..+
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l 92 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNI 92 (450)
T ss_dssp ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 589888 99999999999999999999999988652 2222222232 57888888888754789999999999998
Q ss_pred HHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHH-HHHHHHHHHHhccCCcchhHH
Q 001249 213 IQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL-VDVVGSMLQIAEAESLEEGTR 291 (1114)
Q Consensus 213 ~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~ll~~~~~~~~~~~vr 291 (1114)
...-. .....+. -...++.+.+.+.++++.++..++.+|..++...+..-...+ ..+++.++..+.. +.+..+|
T Consensus 93 ~~~~~--~~~~~~~--~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~v~ 167 (450)
T 2jdq_A 93 ASGNS--LQTRIVI--QAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK-QNRLTMT 167 (450)
T ss_dssp HSSCH--HHHHHHH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS-CCCHHHH
T ss_pred hcCCH--HHHHHHH--hCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-CCCHHHH
Confidence 86321 0111111 123555666667788999999999999999986544322222 2467777777753 3468899
Q ss_pred HHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC
Q 001249 292 HLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG 371 (1114)
Q Consensus 292 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~ 371 (1114)
..++.++..++... .|.. ....+..++|.++..+...+ ......+..++..++...+.
T Consensus 168 ~~a~~~L~~l~~~~--~~~~---~~~~~~~~l~~L~~~l~~~~-----------------~~v~~~a~~~L~~l~~~~~~ 225 (450)
T 2jdq_A 168 RNAVWALSNLCRGK--SPPP---EFAKVSPCLNVLSWLLFVSD-----------------TDVLADACWALSYLSDGPND 225 (450)
T ss_dssp HHHHHHHHHHHCCS--SSCC---CGGGTGGGHHHHHHHTTCCC-----------------HHHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHhCCC--CCCC---CHHHHHHHHHHHHHHHccCC-----------------HHHHHHHHHHHHHHHCCCcH
Confidence 99999999999742 1211 11233567777777764211 11233455566665532110
Q ss_pred --Cc-chHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHh
Q 001249 372 --NT-IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1114)
Q Consensus 372 --~~-~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1114)
.. ....+++.+...+.+++|.+|..++.+|+.++.+........+. .+++.+...+.++++.+|..|+++|+.++.
T Consensus 226 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305 (450)
T ss_dssp HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 00 01124555666778899999999999999999887654333332 588999999999999999999999999987
Q ss_pred hhchhHHhhhh-hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCch-HHHHHHHHHHhhcCChhHHHHHHH
Q 001249 448 DLGPDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALT 525 (1114)
Q Consensus 448 ~~~~~~~~~~~-~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l-~~il~~L~~~l~~~~~~v~~~al~ 525 (1114)
...... .... ..++|.++..+.+ +++.+|..|+++|.+++....++.....+ ..+++.|+.++++.+..++..++.
T Consensus 306 ~~~~~~-~~~~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 383 (450)
T 2jdq_A 306 GNRAQI-QTVIDANIFPALISILQT-AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383 (450)
T ss_dssp SCHHHH-HHHHHTTHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHH
T ss_pred CCHHHH-HHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 544333 2222 5789999999998 88999999999999999765433332222 247899999999999999999999
Q ss_pred HHHHHHHhhhh
Q 001249 526 ALASVADSSQE 536 (1114)
Q Consensus 526 ~l~~l~~~~~~ 536 (1114)
+++.++...+.
T Consensus 384 aL~~l~~~~~~ 394 (450)
T 2jdq_A 384 GLENILRLGEQ 394 (450)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhchh
Confidence 99999986543
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.78 E-value=4.5e-17 Score=188.54 Aligned_cols=402 Identities=14% Similarity=0.135 Sum_probs=282.5
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHH-HHHHHHHHHHhhchhhhHHHHHHHHHHHHHhccc
Q 001249 58 TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQS-SLKSMLLQSIQLESAKSISKKLCDTVSELASNIL 136 (1114)
Q Consensus 58 ~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~-~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~ 136 (1114)
++.|++.+. +.++.+|..|+..|++++.... +..+..-... .+...|++.|.++.++.+|..++.+++.++....
T Consensus 22 l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~---~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~ 97 (450)
T 2jdq_A 22 TSDMIEMIF-SKSPEQQLSATQKFRKLLSKEP---NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS 97 (450)
T ss_dssp CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSS---SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCC---CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH
Confidence 456777775 5688999999999999876431 1111121222 5677788888874488999999999999987321
Q ss_pred CC-C--CchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001249 137 PE-N--GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHL-KHLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (1114)
Q Consensus 137 ~~-~--~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l 212 (1114)
.. . .....+|.+.+.++++++.+|+.|+.+|+.++...++.-.... ..+++.+...+.++.+..+|..|+.++.++
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 10 0 1257899999999999999999999999999876433211111 246778888888533899999999999999
Q ss_pred HHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCCcchhHH
Q 001249 213 IQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTR 291 (1114)
Q Consensus 213 ~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~~~~~vr 291 (1114)
................+|.++ ..+.++++.++..+++++..++...+........ .+++.++..+. +.+..+|
T Consensus 178 ~~~~~~~~~~~~~~~~l~~L~----~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~ 251 (450)
T 2jdq_A 178 CRGKSPPPEFAKVSPCLNVLS----WLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM--HNDYKVV 251 (450)
T ss_dssp HCCSSSCCCGGGTGGGHHHHH----HHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT--CSCHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHH----HHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC--CCchhHH
Confidence 865311111222344455444 4556788999999999999998765443332222 46666777664 3467888
Q ss_pred HHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC
Q 001249 292 HLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG 371 (1114)
Q Consensus 292 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~ 371 (1114)
..|+..+..++.. .+. .... + +.
T Consensus 252 ~~a~~~L~~l~~~---~~~-------~~~~-------------------------------------------~---~~- 274 (450)
T 2jdq_A 252 SPALRAVGNIVTG---DDI-------QTQV-------------------------------------------I---LN- 274 (450)
T ss_dssp HHHHHHHHHHTTS---CHH-------HHHH-------------------------------------------H---HT-
T ss_pred HHHHHHHHHHhhC---ChH-------HHHH-------------------------------------------H---HH-
Confidence 8888888877652 110 0000 0 00
Q ss_pred CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhc
Q 001249 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 450 (1114)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1114)
.. +++.+...+.+++|.+|..|+.+|+.++.+..+.....+. .+++.++..+.++++.||..|+++|+.++....
T Consensus 275 ~~----~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 350 (450)
T 2jdq_A 275 CS----ALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS 350 (450)
T ss_dssp TT----HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCC
T ss_pred Cc----cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC
Confidence 11 3445556677889999999999999999887765554443 688889999999999999999999999987643
Q ss_pred hhHHhhh-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc------cccCchHHH-----HHHHHHHhhcCChh
Q 001249 451 PDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE------ILTPYLDGI-----VSKLLVLLQNGKQM 518 (1114)
Q Consensus 451 ~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~------~l~~~l~~i-----l~~L~~~l~~~~~~ 518 (1114)
+...... ...++|.++..+.+ ++++++..++.+|.+++...+.. .+.+|...+ ++.|..+.++++..
T Consensus 351 ~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~ 429 (450)
T 2jdq_A 351 AEQIKYLVELGCIKPLCDLLTV-MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQE 429 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHH
Confidence 3221222 34799999999998 88999999999999998754321 234666666 57777777788888
Q ss_pred HHHHHHHHHHHHH
Q 001249 519 VQEGALTALASVA 531 (1114)
Q Consensus 519 v~~~al~~l~~l~ 531 (1114)
+++.++.++..+.
T Consensus 430 v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 430 IYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
Confidence 8888888877665
No 27
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.78 E-value=5.8e-13 Score=169.60 Aligned_cols=740 Identities=10% Similarity=0.057 Sum_probs=405.3
Q ss_pred HHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhh-hHHHHH
Q 001249 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLH 186 (1114)
Q Consensus 108 ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~ 186 (1114)
+++.+.+ ++...|+.+-..+..+-+. | +.|.-+...+.. +.+..+|..|..+|...+......+.+ ....+-
T Consensus 21 ~l~~~~~-p~~~~r~~Ae~~L~~~~~~--p-~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir 93 (1049)
T 3m1i_C 21 VVSTFYQ-GSGVQQKQAQEILTKFQDN--P-DAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHRIGIR 93 (1049)
T ss_dssp HHHHHHH-CCHHHHHHHHHHHHHHHHS--T-TGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH
T ss_pred HHHHHhC-CChHHHHHHHHHHHHHHhC--c-hHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHH
Confidence 3344444 4566788888888877553 3 678766655533 568889999999999888764333322 222233
Q ss_pred HHHHHhhcCCC--------ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001249 187 AVFLNCLTNSN--------NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1114)
Q Consensus 187 ~~l~~~l~~~~--------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l 258 (1114)
..++..+.+.. +..+|.....++..++...- ..-||.++..+.+.++ .++..+..++.+|..+
T Consensus 94 ~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~--------p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l 164 (1049)
T 3m1i_C 94 NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEW--------PQNWPEFIPELIGSSS-SSVNVCENNMIVLKLL 164 (1049)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHT--------TTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhC--------cccchHHHHHHHHHHc-cChHHHHHHHHHHHHH
Confidence 33333333210 36788888888988887631 1233455555555554 4555566666666666
Q ss_pred Hccch----------------HHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchh-hHHH
Q 001249 259 AGTEP----------------RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQ-FINR 321 (1114)
Q Consensus 259 ~~~~~----------------~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-~~~~ 321 (1114)
.+... ..+..+++.++..+.+++... .+.+++..+++++..+... .|. .. +-..
T Consensus 165 ~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~-~~~~~~~~aL~~l~~~l~w---i~~-----~~~~~~~ 235 (1049)
T 3m1i_C 165 SEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-SSSSLIVATLESLLRYLHW---IPY-----RYIYETN 235 (1049)
T ss_dssp HHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTT---SCT-----HHHHSSS
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhh---CCH-----HHHhhhh
Confidence 54221 345666777777777766543 2456777777777665542 110 00 0011
Q ss_pred HHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHH
Q 001249 322 LFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIAL 401 (1114)
Q Consensus 322 l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l 401 (1114)
+++.++..+. .+...|.+|+.++
T Consensus 236 ll~~l~~~~l---------------------------------------------------------~~~~~~~~a~~~L 258 (1049)
T 3m1i_C 236 ILELLSTKFM---------------------------------------------------------TSPDTRAITLKCL 258 (1049)
T ss_dssp HHHHHHTHHH---------------------------------------------------------HSHHHHHHHHHHH
T ss_pred HHHHHHHHhC---------------------------------------------------------CCHhHHHHHHHHH
Confidence 2222221110 0223333333333
Q ss_pred HHHHhhc-HH-------HHHHhHHHHHHHHHh--------------cCCCCChhHHHHHHHHHHHhHhhhchhH-----H
Q 001249 402 AQIAEGC-AK-------VMVKNLEQVLSMVLN--------------SFRDPHPRVRWAAINAIGQLSTDLGPDL-----Q 454 (1114)
Q Consensus 402 ~~l~~~~-~~-------~~~~~l~~i~~~l~~--------------~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----~ 454 (1114)
..++... +. .+...++.++..+.. .-.+.+..+....+..+..+++.....+ .
T Consensus 259 ~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 338 (1049)
T 3m1i_C 259 TEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESL 338 (1049)
T ss_dssp HHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhh
Confidence 3333210 00 000111111111111 1123344444445555544443322111 1
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC-----CcccccCchHHHHHHHHHHhhcC--------------
Q 001249 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC-----TPEILTPYLDGIVSKLLVLLQNG-------------- 515 (1114)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~-----~~~~l~~~l~~il~~L~~~l~~~-------------- 515 (1114)
..++..+++.++..... ++..+...++..+..+++.. ....+.+++..+++.++..+.-+
T Consensus 339 ~~~l~~~l~~ll~~~~~-~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~ 417 (1049)
T 3m1i_C 339 RELLLNAHQYLIQLSKI-EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIV 417 (1049)
T ss_dssp HHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEE
T ss_pred HHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcch
Confidence 34566788888887776 67788888988888888721 22345577888888777755321
Q ss_pred -----C---hhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhh
Q 001249 516 -----K---QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDD 587 (1114)
Q Consensus 516 -----~---~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~ 587 (1114)
+ ...+..+-.++..++...+.. .++.+++.+.+.+.. ....+.-+..++-++|.++..++...-.++
T Consensus 418 r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~---~l~~v~~~l~~~l~~--~~~~W~~~eaal~algsia~~~~~~~e~~~ 492 (1049)
T 3m1i_C 418 REFVKESDTIQLYKSEREVLVYLTHLNVID---TEEIMISKLARQIDG--SEWSWHNINTLSWAIGSISGTMSEDTEKRF 492 (1049)
T ss_dssp ECSSCCHHHHHHHHHHHHHHHHHHHHCHHH---HHHHHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTTSSCHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHHccCHHH---HHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHHhcccCchhhHHH
Confidence 0 023445566666666544433 333444555554432 123455677888899988766653323456
Q ss_pred HHHHHHHHHHHhcCCCC-CCCch-hhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCC
Q 001249 588 AKQVMEVLMSLQGSQME-TDDPT-TSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDD 665 (1114)
Q Consensus 588 ~~~i~~~l~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (1114)
+..+++.+..+...... ...++ +..++.++++++..+..+ ..|++.+++.+++.+... .
T Consensus 493 l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~-~----------------- 553 (1049)
T 3m1i_C 493 VVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHET-H----------------- 553 (1049)
T ss_dssp HHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSS-C-----------------
T ss_pred HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCC-C-----------------
Confidence 77888887765331110 11233 324566777777665543 468999999999887321 0
Q ss_pred cccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhcc--------ccHHHHHHHhhhcccccCCHHHHHHHHHhH
Q 001249 666 DSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF--------PWIDQVAPTLVPLLKFYFHEEVRKAAVSAM 737 (1114)
Q Consensus 666 ~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~--------p~~~~~~~~l~~~l~~~~~~~vr~~a~~al 737 (1114)
..-+..|+.++..++..++..+. ||+++++..+...+... ..+-+....+++
T Consensus 554 -------------------~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~-~~~~~~~~~eai 613 (1049)
T 3m1i_C 554 -------------------EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL-QPQQVHTFYKAC 613 (1049)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS-CHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Confidence 22467889999999999988775 99999999988887753 444456777887
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHcc-------C----CcHH---HHHHHHHHHHHHHHHhCCCC
Q 001249 738 PELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHK-------E----PDTE---ICASMLDSLNECIQISGPLL 803 (1114)
Q Consensus 738 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------~----~~~~---~~~~~l~~l~~~l~~~~~~~ 803 (1114)
+.++... + +.+....++..+++.+++.+.. . .+.+ .....+.++..+...+|..+
T Consensus 614 ~~ii~~~----------~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f 682 (1049)
T 3m1i_C 614 GIIISEE----------R-SVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADF 682 (1049)
T ss_dssp HHHHHTC----------C-SHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHcC----------C-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 7776532 1 2334556666666666554431 0 0222 12344566666677777544
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHh---hhchhhhHH
Q 001249 804 DEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTF---KAAFLPFFD 880 (1114)
Q Consensus 804 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~~~~ 880 (1114)
.+ .+..++..+..++..............+......... ..-+.+...+..++....... +..+.|++.
T Consensus 683 ~p-~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~-------~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~ 754 (1049)
T 3m1i_C 683 YP-QLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKV-------RGLRTIKKEILKLVETYISKARNLDDVVKVLVE 754 (1049)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHH-------HHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHH-------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33 2333444443333322111100000011000000000 000111222222233222221 112345555
Q ss_pred HHHHhHhhhhcCCCCHHHH-HHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhc-----c--CCChhHHhhhhHHHHHHHh
Q 001249 881 ELSSYLTPMWGKDKTAEER-RIAICIFDDVAEQCREAALKYYETYLPFLLEAC-----N--DENQDVRQAAVYGLGVCAE 952 (1114)
Q Consensus 881 ~l~~~l~~~l~~~~~~~~r-~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l-----~--~~~~~vr~~a~~~lg~l~~ 952 (1114)
.++..++....+. ....| ..++.+++.++..+|..+.+|++.+++.+..+. . +++|++|+..+..++.++.
T Consensus 755 ~~l~~ll~~~~~~-~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~ 833 (1049)
T 3m1i_C 755 PLLNAVLEDYMNN-VPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINE 833 (1049)
T ss_dssp HHHHHHHHHHHHS-CGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHH
Confidence 5554444432211 11111 457889999999999887889999988887774 3 3679999999999999999
Q ss_pred hcCCCchH----HHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHhh
Q 001249 953 FGGSVVKP----LVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQF 1000 (1114)
Q Consensus 953 ~~~~~~~~----~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~ 1000 (1114)
+++..+.+ .+..+++.....+..+ ++.+...++..+..++..
T Consensus 834 ~~~~~l~~~~~~~~~~v~~~~~~al~~~------~~~~~~~~l~~l~~l~~~ 879 (1049)
T 3m1i_C 834 KSFAAFLELPPAAFKLFVDAICWAFKHN------NRDVEVNGLQIALDLVKN 879 (1049)
T ss_dssp HCTHHHHHSCHHHHHHHHHHHHHHHTCC------SHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHcCCHHHHHHHHHHHHHHhCCC------CchHHHHHHHHHHHHHHH
Confidence 99876543 2455666666666554 366777788787777765
No 28
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.74 E-value=5e-12 Score=149.35 Aligned_cols=721 Identities=13% Similarity=0.101 Sum_probs=418.1
Q ss_pred CCChhhHHHHHHHHHHhhhhhh-hhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHH-
Q 001249 154 SDSVKLQESAFLIFAQLSQYIG-DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPL- 231 (1114)
Q Consensus 154 ~~~~~~r~~al~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~- 231 (1114)
+.+.+.|+.|+.=|-.++++-. ... -+-+.-+..+.+.+.+..++++..+|++++..++..-. .+ ....+..
T Consensus 19 ~~~~~~~~~a~~nl~vl~re~aga~~-i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~---~r--~~~~~~~~ 92 (810)
T 3now_A 19 ATPIDKRRAAANNLVVLAKEQTGAEL-LYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSV---ER--TKGVLTEL 92 (810)
T ss_dssp CCSSHHHHHHHHHHHHHSSCHHHHHH-HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH---HH--HHHHHHHS
T ss_pred ccCHHHHHHHHhhceeeeccccchHH-HHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccH---HH--HHHHHHHc
Confidence 3456777778777776765521 111 01222344566666663389999999999999987531 11 1111111
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccch------------HHH---HHHHHHHHHHHHHHhccCCcchhHHHHHHH
Q 001249 232 MMRTLTESLNNGNEATAQEALELLIELAGTEP------------RFL---RRQLVDVVGSMLQIAEAESLEEGTRHLAIE 296 (1114)
Q Consensus 232 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~------------~~~---~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~ 296 (1114)
=++.+...+.+++++....++.++..+..... ... ...+..++..++..+.+.......|..+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~ 172 (810)
T 3now_A 93 GVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIE 172 (810)
T ss_dssp CHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHH
Confidence 02234444556777777777777766654331 112 234567777778888777778889999999
Q ss_pred HHHHHHHhhhccchhhhcchhhHHH-HHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC----
Q 001249 297 FVITLAEARERAPGMMRKLPQFINR-LFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG---- 371 (1114)
Q Consensus 297 ~l~~l~~~~~~~~~~~~~~~~~~~~-l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~---- 371 (1114)
.+..-+..+. .... ..++.. =+..++..-....+- .+.... .-....+..+.-++.++-..++.
T Consensus 173 ~~~~~~~~~~--~~~~---~~~~~~~g~~~~l~v~~~~~~~-~~~~~~-----~~~~~~r~~~~~~l~~~~~~~~~~~~~ 241 (810)
T 3now_A 173 LITRNVHYTA--LEWA---ERLVEIRGLCRLLDVCSELEDY-KYESAM-----DITGSSSTIASVCLARIYENMYYDEAK 241 (810)
T ss_dssp HHHHHTTCTT--TTHH---HHHHHTTHHHHHHHHHTCCSSS-CCSSCC-----CCCTTHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHHhCCccc--cccc---cchhhHhhHHHHHHHHhcCccc-cccccC-----CCChhHHHHHHHHHHHHHHHhccchhH
Confidence 9877664211 0000 011111 112222222222110 000000 00112455566778888777653
Q ss_pred CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhh
Q 001249 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL 449 (1114)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 449 (1114)
+.+-..+-.++...+..++...+.-|+.++..+..+.++.-...+ ...++.++..+.++++.++..|.++++..+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~- 320 (810)
T 3now_A 242 ARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK- 320 (810)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-
Confidence 234455666777777788888888999999999999887544443 35788889999999999999999999998765
Q ss_pred chhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC--c--cccc-CchHHHHHHHHHHhhcC--ChhHHHH
Q 001249 450 GPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT--P--EILT-PYLDGIVSKLLVLLQNG--KQMVQEG 522 (1114)
Q Consensus 450 ~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~--~--~~l~-~~l~~il~~L~~~l~~~--~~~v~~~ 522 (1114)
+.........-+|.|...+.+ ++..+|..|..+|.++....+ + ..+. .-+..+++.+.+++.++ +..+++.
T Consensus 321 -~~~R~~I~~~gv~~L~~Ll~s-~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~ 398 (810)
T 3now_A 321 -KDKAKALCEQGVDILKRLYHS-KNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRW 398 (810)
T ss_dssp -HHHHHTTHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHH
T ss_pred -cHHHHHHHHcCcHHHHHHHcC-CCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 222112222234888888887 778899999999999875322 1 1121 22578899999999988 7899999
Q ss_pred HHHHHHHHHHhhhhhhhhhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhc
Q 001249 523 ALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQG 600 (1114)
Q Consensus 523 al~~l~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~ 600 (1114)
++.+|+.++...... .... ..++|.|..++... +..+...|..+++.++.....+.-.|. +.. +.+...
T Consensus 399 AveaLayLS~~~~vk-~~lv~d~g~Ip~LV~LL~s~----d~~i~~~al~~L~NLt~~~d~q~~~~~---l~~-la~~s~ 469 (810)
T 3now_A 399 AADGLAYLTLDAECK-EKLIEDKASIHALMDLARGG----NQSCLYGVVTTFVNLCNAYEKQEMLPE---MIE-LAKFAK 469 (810)
T ss_dssp HHHHHHHHTTSHHHH-HHHHHCHHHHHHHHHHHHTT----CGGGHHHHHHHHHHHTTCSCCCCCCCS---CGG-GTTTTC
T ss_pred HHHHHHHHhCCcHHH-HHHHHccchHHHHHHHhCCC----ChHHHHHHHHHHHHHcCCchhhhhhHH---HHH-HHHHhh
Confidence 999999997543321 1111 35788888888642 234566677777777653221110110 000 000000
Q ss_pred CCCCCCCchhhHHHHHHHHHHH-HhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceee
Q 001249 601 SQMETDDPTTSYMLQAWARLCK-CLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIG 679 (1114)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1114)
......++.-.. .....-++ .... ..+|.+.+.+...
T Consensus 470 ~~v~~~~~ld~~--~~v~~r~~~Vvea-------GaVp~LV~LL~s~--------------------------------- 507 (810)
T 3now_A 470 QHIPEEHELDDV--DFINKRITVLANE-------GITTALCALAKTE--------------------------------- 507 (810)
T ss_dssp CSCCCSSCHHHH--HHHHHHHHHHHHT-------THHHHHHHHHTCC---------------------------------
T ss_pred ccCccccccccH--HHHHHHHHHHHHC-------cCHHHHHHHHcCC---------------------------------
Confidence 000011111000 00000000 0111 1456666666321
Q ss_pred ecchhHHHHHHHHHHHHHHHHHhhhhccccH--HHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCC
Q 001249 680 IKTSVLEEKATACNMLCCYADELKEGFFPWI--DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRN 757 (1114)
Q Consensus 680 v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~--~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~ 757 (1114)
...-|+.|+.+|+.++.. ......+ ...++.++.++... +...|+.|+.+|+++.... +
T Consensus 508 ----s~~vqe~Aa~aL~NLA~d--~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~------------~ 568 (810)
T 3now_A 508 ----SHNSQELIARVLNAVCGL--KELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITI------------N 568 (810)
T ss_dssp ----CHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHS------------C
T ss_pred ----CHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCC------------C
Confidence 023467888899999743 2233333 22567777777654 6788999999999987542 1
Q ss_pred HHHH--HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHHHHHHHHhhHHHHHHhhc
Q 001249 758 ESYV--KQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDE-IKQVITASSSRKRERAERAK 834 (1114)
Q Consensus 758 ~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~ 834 (1114)
+... .......+|+|++.+..+.+......++.+|..+.. .+++....+++. .++.|...+.
T Consensus 569 p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~-----~~d~~~~~Ii~aG~l~~Lv~LL~---------- 633 (810)
T 3now_A 569 PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS-----MNESVRQRIIKEQGVSKIEYYLM---------- 633 (810)
T ss_dssp HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHHH----------
T ss_pred hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc-----CCHHHHHHHHHcCCHHHHHHHHc----------
Confidence 1111 011234778888888755443333445555554421 122222222211 1111111110
Q ss_pred CCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHH--HHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhH
Q 001249 835 AEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFD--ELSSYLTPMWGKDKTAEERRIAICIFDDVAEQ 912 (1114)
Q Consensus 835 ~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~ 912 (1114)
. ....++..+..+++.++..- +....+.. ..++.++.++. ..+...|..|..+|+.+...
T Consensus 634 s----------------~~~~Vq~~A~~~L~NLa~~~-~~~~~~v~~~g~l~~Lv~LL~-s~d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 634 E----------------DHLYLTRAAAQCLCNLVMSE-DVIKMFEGNNDRVKFLALLCE-DEDEETATACAGALAIITSV 695 (810)
T ss_dssp S----------------CCTTHHHHHHHHHHHHTTSH-HHHHHHHSSSSHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHH
T ss_pred C----------------CCHHHHHHHHHHHHHHhCCh-HHHHHHHhccCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCC
Confidence 0 11246667888888877532 22222332 36777777774 45677888889999998765
Q ss_pred hhhhhhhhh--HhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCchHHH--HHHHHHHHHhhcCCCCCChhhhhhHH
Q 001249 913 CREAALKYY--ETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLV--GEALSRLNVVIRHPNALQPENLMAYD 988 (1114)
Q Consensus 913 ~~~~~~~~~--~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~--~~~l~~L~~~l~~~~~~~~~~~~~~~ 988 (1114)
........+ ...+|.++..+.+++..++..|+++++.++.++++. ..++ ...++.|.++++..+. .+..+++
T Consensus 696 s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~-~~~l~e~G~i~~L~~LL~~~d~---~~~~i~e 771 (810)
T 3now_A 696 SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI-AKKLFETDIMELLSGLGQLPDD---TRAKARE 771 (810)
T ss_dssp CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHH-HHHHHTSTHHHHHTTSCCCTTS---TTHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHH-HHHHHHCCCHHHHHHHHhCccc---CcHHHHH
Confidence 443333333 368899999999999999999999999999854322 2222 2367888888765422 2467888
Q ss_pred HHHHHHHHHHhhc
Q 001249 989 NAVSALGKICQFH 1001 (1114)
Q Consensus 989 na~~al~~l~~~~ 1001 (1114)
.|..|+..++.+.
T Consensus 772 ~Al~aL~~ll~~g 784 (810)
T 3now_A 772 VATQCLAAAERYR 784 (810)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC
Confidence 8999998887653
No 29
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.74 E-value=6.3e-13 Score=156.92 Aligned_cols=674 Identities=12% Similarity=0.066 Sum_probs=412.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchH-------HHHHHHHHHccCCCHHHHHHHHHHHHHhcccCC---CC
Q 001249 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDS-------LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD---SF 91 (1114)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~-------~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~---~~ 91 (1114)
+++.+++-. .+.+.+.|.+|-..|--+...+... -+..|..++.+..++++.-.|...|-.+...+. ..
T Consensus 9 ~~m~~i~~~-~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~ 87 (810)
T 3now_A 9 KQMMDLTFD-LATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKG 87 (810)
T ss_dssp HHHHHHHHS-SCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcc-cccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHH
Confidence 344444444 4667888888887766544322211 145677777766889998888888888776640 01
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccC----C--C-----------CchhhHHHHHHhhcC
Q 001249 92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP----E--N-----------GWPELLPFMFQCVSS 154 (1114)
Q Consensus 92 ~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~----~--~-----------~w~~ll~~l~~~~~~ 154 (1114)
.|..++ ...+.+.+.+ .+..+-..++.++..+...... . + ....++..|...+.+
T Consensus 88 ~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (810)
T 3now_A 88 VLTELG-------VPWFMRVLDQ-KHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITD 159 (810)
T ss_dssp HHHHSC-------HHHHHHHHHC-CSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred HHHHcC-------HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhc
Confidence 121222 1246667776 5777777788887777654321 1 0 123566777777776
Q ss_pred C--ChhhHHHHHHHHHHhhhhh----hhhhhhhHHHHHHHHHHhhcCC---------CChHHHHHHHHHHHHHHHhcCCc
Q 001249 155 D--SVKLQESAFLIFAQLSQYI----GDTLTPHLKHLHAVFLNCLTNS---------NNPDVKIAALNAVINFIQCLTSS 219 (1114)
Q Consensus 155 ~--~~~~r~~al~~l~~l~~~~----~~~~~~~~~~l~~~l~~~l~~~---------~~~~vr~~a~~~l~~l~~~~~~~ 219 (1114)
. +...|..++.++-.-+.+- +..+.. ...+..++.-+-+-+ -...+|..+.-++..+.+.+...
T Consensus 160 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~ 238 (810)
T 3now_A 160 RTISGAARDGVIELITRNVHYTALEWAERLVE-IRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYD 238 (810)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHH-TTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSH
T ss_pred cccChhhHHHHHHHHHHhCCccccccccchhh-HhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccc
Confidence 5 5678999998877665332 111111 112222222221111 14679999999999999987644
Q ss_pred chHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHH--HHHHHHHHHHhccCCcchhHHHHHHHH
Q 001249 220 ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL--VDVVGSMLQIAEAESLEEGTRHLAIEF 297 (1114)
Q Consensus 220 ~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~ll~~~~~~~~~~~vr~~a~~~ 297 (1114)
...+.|...+..+++. .+..++.+....+++.+..+....++.-...+ ...++.++..+.. .++.++..|++.
T Consensus 239 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s--~~~~~q~~A~~a 313 (810)
T 3now_A 239 EAKARFTDQIDEYIKD---KLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATT--DDELQQRVACEC 313 (810)
T ss_dssp HHHHHHHHHHHHHHHH---HHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHS--SCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH---HhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCC--CCHHHHHHHHHH
Confidence 4456677766655554 34566777788889999888876655433333 2567777777754 367889999999
Q ss_pred HHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcC---C-C-
Q 001249 298 VITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG---G-N- 372 (1114)
Q Consensus 298 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~---~-~- 372 (1114)
+..++.. +. .+. ..++.-+|.|...+...+ ...+.-|..+|..++...+ + +
T Consensus 314 l~~aa~~----~~-~R~--~I~~~gv~~L~~Ll~s~~-----------------~~vr~~Al~~L~kl~s~~~~d~~~~~ 369 (810)
T 3now_A 314 LIAASSK----KD-KAK--ALCEQGVDILKRLYHSKN-----------------DGIRVRALVGLCKLGSYGGQDAAIRP 369 (810)
T ss_dssp HHHHTTS----HH-HHH--TTHHHHHHHHHHHTTCSC-----------------HHHHHHHHHHHHHHHTTTTTTTSCCS
T ss_pred HHHHcCC----cH-HHH--HHHHcCcHHHHHHHcCCC-----------------HHHHHHHHHHHHHhccccccCccccc
Confidence 9988763 21 121 122222377776654211 0123345567777764322 1 1
Q ss_pred ---cchHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhH
Q 001249 373 ---TIVPVASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1114)
Q Consensus 373 ---~~~~~l~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1114)
.-+..+.+.+..++.++ +...|..|+.+|+.++.+......-.. ...+|.++..++++++.+++.|+++|+.++
T Consensus 370 ~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt 449 (810)
T 3now_A 370 FGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLC 449 (810)
T ss_dssp STTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 12456778888888887 899999999999999876543211111 357888888888899999999999999999
Q ss_pred hhhch----------------------------hH----HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001249 447 TDLGP----------------------------DL----QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1114)
Q Consensus 447 ~~~~~----------------------------~~----~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1114)
..... .. ..-.-...+|.+...+.+ +++.+|..|+++|.+++...
T Consensus 450 ~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s-~s~~vqe~Aa~aL~NLA~d~-- 526 (810)
T 3now_A 450 NAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT-ESHNSQELIARVLNAVCGLK-- 526 (810)
T ss_dssp TCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC-CCHHHHHHHHHHHHHHHTSH--
T ss_pred CCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCH--
Confidence 74310 00 000123688999999998 89999999999999998531
Q ss_pred ccccCc--hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh--hhh-hHhhhhHHHHHHHhhccCccchhhhHHHH
Q 001249 495 EILTPY--LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH--FQK-YYDAVMPFLKAILVNATDKSNRMLRAKSM 569 (1114)
Q Consensus 495 ~~l~~~--l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~--~~~-~~~~i~~~L~~~l~~~~~~~~~~lr~~a~ 569 (1114)
+ .... -...++.|+.++.+++...|+.|..+|+.++....+. |.. .....+|.|..++... .....+..|+
T Consensus 527 ~-~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~---~~~l~~~eAl 602 (810)
T 3now_A 527 E-LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD---CTALENFESL 602 (810)
T ss_dssp H-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT---SCHHHHHHHH
T ss_pred H-HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC---CcHHHHHHHH
Confidence 1 1111 1235788999999999999999999999998754332 211 1234788888887532 1222334577
Q ss_pred HHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccch--hhhhHHHHHhccC
Q 001249 570 ECISLVGMAVGKDKFRDDA--KQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM--SVVMPPLLQSAQL 645 (1114)
Q Consensus 570 ~~l~~i~~~~~~~~f~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l--~~i~~~ll~~~~~ 645 (1114)
.+++.++..- +.....+ ...++.+..++.+ .+..++..+..++++++..-. ....+. ...++.++..+..
T Consensus 603 ~AL~NLa~~~--d~~~~~Ii~aG~l~~Lv~LL~s---~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s 676 (810)
T 3now_A 603 MALTNLASMN--ESVRQRIIKEQGVSKIEYYLME---DHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCED 676 (810)
T ss_dssp HHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHHS---CCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGC
T ss_pred HHHHHHhcCC--HHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcC
Confidence 7777776532 1111110 1123334443332 235588889999888875321 112222 2356777776632
Q ss_pred CCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccH--HHHHHHhhhcccc
Q 001249 646 KPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI--DQVAPTLVPLLKF 723 (1114)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~--~~~~~~l~~~l~~ 723 (1114)
+ ....|..|+.+|+.++...+......+ ...++.++.++.+
T Consensus 677 ~-------------------------------------d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s 719 (810)
T 3now_A 677 E-------------------------------------DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN 719 (810)
T ss_dssp S-------------------------------------SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTC
T ss_pred C-------------------------------------CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCC
Confidence 1 023567888899999875433332223 2466777777776
Q ss_pred cCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHHHHHHHHccC--CcHHHHHHHHHHHHHHHHH
Q 001249 724 YFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLS-DFIIPALVEALHKE--PDTEICASMLDSLNECIQI 798 (1114)
Q Consensus 724 ~~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~~~~~--~~~~~~~~~l~~l~~~l~~ 798 (1114)
. +.++|..|+.++.++.... .+....+. ...++.|...+... .+.+++..++++|..+++.
T Consensus 720 ~-d~~vq~~A~~aL~NL~~~s-------------~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 720 P-SPAVQHRGIVIILNMINAG-------------EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp S-SHHHHHHHHHHHHHHHTTC-------------HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHhCC-------------HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 4 8999999999999987521 11222222 23556666555432 3566666667776666543
No 30
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.73 E-value=8.6e-15 Score=173.47 Aligned_cols=477 Identities=16% Similarity=0.179 Sum_probs=328.4
Q ss_pred CCC-hHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcccCCCCcc
Q 001249 18 GPD-SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLW 93 (1114)
Q Consensus 18 ~~~-~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~R~~A~~~Lk~~l~~~~~~~w 93 (1114)
|.| ..-+..+++.+.|+|...|+.+...+..+.+.+|+. .....+.+. ++.++.+|..|...|.+..
T Consensus 44 G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~-~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------- 114 (591)
T 2vgl_B 44 GKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM-AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------- 114 (591)
T ss_dssp TCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH-HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--------
T ss_pred CCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--------
Confidence 444 346677788778889999999999888877656765 333445444 2778999999977776643
Q ss_pred cCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCch--hhHHHHHHhhcCCChhhHHHHHHHHHHhh
Q 001249 94 PRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWP--ELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1114)
Q Consensus 94 ~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~--~ll~~l~~~~~~~~~~~r~~al~~l~~l~ 171 (1114)
+++..+.+...+.+.+.+ +++.||+.++.++..+++. .| +.++ ++++.+.+++.++++.++..|+.+|+.++
T Consensus 115 ---~~~~~~~l~~~l~~~L~d-~~~~VRk~A~~al~~i~~~-~p-~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 115 ---VDKITEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLHDI-NA-QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 188 (591)
T ss_dssp ---SGGGHHHHHHHHHHHSSC-SCHHHHHHHHHHHHHHHHS-SC-CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred ---hHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhh-Ch-hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 345566666777777775 7999999999999999984 34 5666 58999999999999999999999999999
Q ss_pred hhhhhh-hhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHH
Q 001249 172 QYIGDT-LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250 (1114)
Q Consensus 172 ~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~ 250 (1114)
...++. ........+..+++.+.+. ++-.+...++++..+.. . +... ...+++.+...+++.++.++..
T Consensus 189 ~~~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~----~-~~~~----~~~~l~~l~~~l~~~~~~V~~e 258 (591)
T 2vgl_B 189 ESHPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNP----K-DDRE----AQSICERVTPRLSHANSAVVLS 258 (591)
T ss_dssp TSCCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCC----C-SHHH----HHHHHHHHTTCSCSSTTHHHHH
T ss_pred hhCCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCC----C-ChHH----HHHHHHHHHHHHcCCChHHHHH
Confidence 876543 2233445555666666665 77777777776643331 1 1111 2345556666677889999999
Q ss_pred HHHHHHHHHcc---chHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001249 251 ALELLIELAGT---EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1114)
Q Consensus 251 ~~~~l~~l~~~---~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1114)
++.++..+... .+..+......+.+.++.+.. .+.++|..|+..+..++.. .|.... +++..+
T Consensus 259 a~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~---~d~~vr~~aL~~l~~i~~~---~p~~~~---~~~~~~----- 324 (591)
T 2vgl_B 259 AVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS---GEPEVQYVALRNINLIVQK---RPEILK---QEIKVF----- 324 (591)
T ss_dssp HHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT---SCHHHHHHHHHHHHHHHHH---CCSTTT---TCTTTT-----
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHh---ChHHHH---HHHHhh-----
Confidence 99999998642 334455555566666665542 4688999999999998873 343221 111100
Q ss_pred HhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 001249 328 SMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEG 407 (1114)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 407 (1114)
+... + ++ ..+....++.+..... +.-+..+++.+..++.+.++..|..++.+++.++..
T Consensus 325 --~~~~-~--------------d~---~~Ir~~al~~L~~l~~-~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~ 383 (591)
T 2vgl_B 325 --FVKY-N--------------DP---IYVKLEKLDIMIRLAS-QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK 383 (591)
T ss_dssp --SCCT-T--------------SC---HHHHHHHHHHHHHTCC-SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred --eecc-C--------------Ch---HHHHHHHHHHHHHHCC-hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 0000 0 01 2233445555555433 455677888888899999999999999999999987
Q ss_pred cHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHH
Q 001249 408 CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1114)
Q Consensus 408 ~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~ 487 (1114)
.+. ....+++.++..+.+....|+..+..++..+....+. ....+++.++..+.+...+.++..++|.|+.
T Consensus 384 ~~~----~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~-----~~~~~v~~L~~~l~~~~~~~~~~~~~wilGe 454 (591)
T 2vgl_B 384 VEQ----SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN-----KYESIIATLCENLDSLDEPDARAAMIWIVGE 454 (591)
T ss_dssp CHH----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS-----SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHT
T ss_pred Chh----HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc-----hHHHHHHHHHHHHHhccCHHHHHHHHHHHHc
Confidence 653 3456677777888888999999998888888765432 2356778888888764678999999999998
Q ss_pred hhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHH
Q 001249 488 FSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAK 567 (1114)
Q Consensus 488 l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~ 567 (1114)
+...... .+.+++.+...+.+.+..+|..++.++..+....++... ..+..+++... .+..+..+|.+
T Consensus 455 y~~~~~~------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~----~~i~~ll~~~~--~d~~d~evrdR 522 (591)
T 2vgl_B 455 YAERIDN------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQ----ELVQQVLSLAT--QDSDNPDLRDR 522 (591)
T ss_dssp TCTTCTT------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTH----HHHHHHHHHHH--TTCCCHHHHHH
T ss_pred ccccccC------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHH----HHHHHHHHHhh--hcCCChHHHHH
Confidence 8765532 346666666666667889999999999988865543221 22232333221 22244578999
Q ss_pred HHHHHHHH
Q 001249 568 SMECISLV 575 (1114)
Q Consensus 568 a~~~l~~i 575 (1114)
|.+.++.+
T Consensus 523 A~~y~~ll 530 (591)
T 2vgl_B 523 GYIYWRLL 530 (591)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHHH
Confidence 98887555
No 31
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=7.1e-17 Score=167.95 Aligned_cols=207 Identities=14% Similarity=0.185 Sum_probs=177.6
Q ss_pred CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC-CCChhHHHHHHHHHHHhHhhhc
Q 001249 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLG 450 (1114)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 450 (1114)
.++++.+.+.+.+.++|.+|+.|.+|+..|..+++++++.....+..+++.+...+. |+++.||..|+.+++.++..++
T Consensus 10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 455555556677788899999999999999999998654333456788999999995 9999999999999999999999
Q ss_pred hhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001249 451 PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1114)
Q Consensus 451 ~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l 530 (1114)
+.+ ..|...++|.++..+.| +++.||.+++.+|..+++..+ ++.+++.+...+++.++.+|..++..++.+
T Consensus 90 ~~~-~~~~~~ilp~ll~~l~d-~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 90 KRF-SNYASACVPSLLEKFKE-KKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp GGG-HHHHHHHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 888 78999999999999999 899999999999999987643 578899999999999999999999999998
Q ss_pred HHhhhh--hhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHH
Q 001249 531 ADSSQE--HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (1114)
Q Consensus 531 ~~~~~~--~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i 591 (1114)
+...+. .+.+|++.++|.+...+.+ ....+|..|++|++.++..+|.+.|.+|++.+
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D----~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNE----PDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTS----SCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 877643 3678999999999999843 34579999999999999999977788876543
No 32
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.71 E-value=7.3e-12 Score=155.06 Aligned_cols=776 Identities=12% Similarity=0.111 Sum_probs=424.6
Q ss_pred HHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhch--hhhHHHHHHHHHHHHHhcccCCC--
Q 001249 64 LLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPEN-- 139 (1114)
Q Consensus 64 il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~--~~~vr~~~~~~i~~ia~~~~~~~-- 139 (1114)
.+..+.+++.|+.|-..|.+.=.. .+.| ..++..|.+.+ +..+|.-++.++....+ .++..
T Consensus 15 ~~~p~sd~~~r~~A~~~L~~~q~s--p~aw------------~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~-~l~~e~~ 79 (980)
T 3ibv_A 15 ALDPSVGPIIKQQATDFIGSLRSS--STGW------------KICHEIFSEKTKYKPSTRLICLQTLSEKVR-EWNNESN 79 (980)
T ss_dssp HHCTTSCHHHHHHHHHHHHHHHHS--TTHH------------HHHHHHTTCTTTSCHHHHHHHHHHHHHHHH-HCCTTTS
T ss_pred HhCCCCCHHHHHHHHHHHHHHHcC--hhHH------------HHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-hCChhhh
Confidence 343455889999999888875332 1224 23344444432 67889988888888877 56655
Q ss_pred --CchhhHHHHHHhhcC-----CChhhHHHHHHHHHHhhhhh-hhhhhhhHHHHHHHHHHhhcCCCCh-HHHHHHHHHHH
Q 001249 140 --GWPELLPFMFQCVSS-----DSVKLQESAFLIFAQLSQYI-GDTLTPHLKHLHAVFLNCLTNSNNP-DVKIAALNAVI 210 (1114)
Q Consensus 140 --~w~~ll~~l~~~~~~-----~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~-~vr~~a~~~l~ 210 (1114)
....+-..++.++.+ ....+|.....++..++... +..-...++.++.. ++.+ +. ......++.+.
T Consensus 80 ~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~----~~~~-~~~~~~~~~LriL~ 154 (980)
T 3ibv_A 80 LLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGV----IAAS-SQSEFSNFYLKVLL 154 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHH----HHHH-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHH----hcCC-ChhHHHHHHHHHHH
Confidence 556666666666542 24467777777777777664 33222334444443 3332 22 23344555555
Q ss_pred HHHHhcCCcc---------h----HhH-----HHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHH
Q 001249 211 NFIQCLTSSA---------D----RDR-----FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVD 272 (1114)
Q Consensus 211 ~l~~~~~~~~---------~----~~~-----~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 272 (1114)
.+-+.+.+.. . .+. +..+.+.+++.+..+.++.++..+..+++++...+.-.+...--. ..
T Consensus 155 ~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~-~~ 233 (980)
T 3ibv_A 155 SIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN-EP 233 (980)
T ss_dssp HHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC-HH
T ss_pred HhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc-ch
Confidence 4444432100 0 111 222355556666655555678888999999998887433222111 46
Q ss_pred HHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCC
Q 001249 273 VVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGES 352 (1114)
Q Consensus 273 l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~ 352 (1114)
+++.+++.+. ++++|..|++++..++.... .|. .+ .+.+..+ .+...+.....+ ++|.| -.
T Consensus 234 ll~~l~~~L~----~~~~r~~A~ecL~ei~~k~~-~~~--~k-~~li~~l--~L~~~~~~l~~~-------~~D~d--~~ 294 (980)
T 3ibv_A 234 CMNLLYSFLQ----IEELRCAACETMTEIVNKKM-KPL--EK-LNLLNIL--NLNLFFSKSQEQ-------STDPN--FD 294 (980)
T ss_dssp HHHHHHHHTT----SHHHHHHHHHHHHHHHHSCC-CHH--HH-HHHHHHH--HHHHHHCC------------CCHH--HH
T ss_pred HHHHHHHHcC----ChHHHHHHHHHHHHHHHcCC-Chh--hH-HHHHHHH--hHHHHHHHHhcc-------cccHH--HH
Confidence 7777777764 37899999999999988421 111 00 1122221 111222211100 01111 00
Q ss_pred -Cchh---hHHHHHHHHHHHcCC--C--------cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh---------cH
Q 001249 353 -SNYS---VGQECLDRLAIALGG--N--------TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEG---------CA 409 (1114)
Q Consensus 353 -~~~~---~a~~~l~~l~~~~~~--~--------~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~---------~~ 409 (1114)
...+ ..+..+-.+ ...++ . ..+..+++.+.....++++.+-..++-.+....+. ..
T Consensus 295 ~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~ 373 (980)
T 3ibv_A 295 EHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELS 373 (980)
T ss_dssp HHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcccccccc
Confidence 0000 111111122 11110 0 23344666666777788877766666666655532 23
Q ss_pred HHHHHhHHHHHHHHHhcCCCCC----------------hhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhcc--
Q 001249 410 KVMVKNLEQVLSMVLNSFRDPH----------------PRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMD-- 470 (1114)
Q Consensus 410 ~~~~~~l~~i~~~l~~~l~d~~----------------~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~-- 470 (1114)
....+++..+++.++..+.-+. ...|.... .+-..+..+++...-.+ +..+.+.+-+.+.
T Consensus 374 ~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~ 452 (980)
T 3ibv_A 374 ASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLS 452 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc
Confidence 4566788889998888764211 13455555 44444444555332221 1245555555553
Q ss_pred -CCCChhHHHHHHHHHHHhhhcCCccc-----ccCchHHHHHHHHHHhh-----cCChhHHHHHHHHHHHHHHhhhhhhh
Q 001249 471 -DFQNPRVQAHAASAVLNFSENCTPEI-----LTPYLDGIVSKLLVLLQ-----NGKQMVQEGALTALASVADSSQEHFQ 539 (1114)
Q Consensus 471 -~~~~~~v~~~a~~al~~l~~~~~~~~-----l~~~l~~il~~L~~~l~-----~~~~~v~~~al~~l~~l~~~~~~~~~ 539 (1114)
+ .+|+.++++..+|..+.|.+.... ..++++.+++.+..+++ .+++.||..++.+++..+.....+ .
T Consensus 453 ~~-~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~ 530 (980)
T 3ibv_A 453 PE-NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-S 530 (980)
T ss_dssp HH-HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-C
T ss_pred CC-CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-c
Confidence 2 468899999999999999876421 23677888888888776 678999999999999988776532 2
Q ss_pred hhHhhhhHHHHH--HHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCC-C--C-------
Q 001249 540 KYYDAVMPFLKA--ILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMET-D--D------- 607 (1114)
Q Consensus 540 ~~~~~i~~~L~~--~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~-~--~------- 607 (1114)
.|++.+++.+.. .+. .....+|.+|..++..+.+..+ ..+.||++.+++.+..+....... . +
T Consensus 531 ~~l~~~L~~ll~~~gl~----~~~~~V~~~a~~af~~f~~~~~-~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~ 605 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIH----NTNERVRPRAWYLFYRFVKSIK-KQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLN 605 (980)
T ss_dssp TTHHHHHHHHTSTTTTT----CCCTTTHHHHHHHHHHHHHHTT-TTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHH
T ss_pred hhHHHHHHHHhcccccc----CCChhHHHHHHHHHHHHHHHhh-HHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchh
Confidence 466666665555 332 2335689999999999999888 567899999998876644321111 1 0
Q ss_pred --------chhhHHHHHHHHHHHHhcc---CCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCc
Q 001249 608 --------PTTSYMLQAWARLCKCLGQ---DFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDK 676 (1114)
Q Consensus 608 --------~~~~~~~~~~~~l~~~~~~---~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1114)
.-+-++++++|.++...+. .-..|+..+++.+++.+..--. ... ..+++
T Consensus 606 ~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~----~~~-------~~~~~--------- 665 (980)
T 3ibv_A 606 SSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALS----SDL-------SALEN--------- 665 (980)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHT----TSC-------C--CH---------
T ss_pred hhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHh----hcc-------cCccH---------
Confidence 0245688888888887653 3556788888877776632000 000 00000
Q ss_pred eeeecchhHHHHHHHHHHHHHHHHHhhhh------ccccHHHHHHHhhhcccc-cCCHHHHHHHHHhHHHHHHHHHHHHH
Q 001249 677 RIGIKTSVLEEKATACNMLCCYADELKEG------FFPWIDQVAPTLVPLLKF-YFHEEVRKAAVSAMPELLRSAKLAIE 749 (1114)
Q Consensus 677 ~~~v~~~~~~~k~~A~~~l~~~~~~~~~~------~~p~~~~~~~~l~~~l~~-~~~~~vr~~a~~al~~l~~~~~~~~~ 749 (1114)
.. .-...+.+++.++++++.. ..+.+.++++.+...+.. ..+..||++++.++.+++.+....
T Consensus 666 -------~~-~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~-- 735 (980)
T 3ibv_A 666 -------II-SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD-- 735 (980)
T ss_dssp -------HH-HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH--
T ss_pred -------HH-HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHh--
Confidence 00 1123466778888876432 223445666666555542 136889999999999998765322
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhHHHH
Q 001249 750 KGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRER 829 (1114)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 829 (1114)
+.+++..++..++..+. ..-....+.-+..++..+|..+ .+.+..++..+..-+...+..
T Consensus 736 -----------~~p~lp~~i~~ll~~~~----~~e~~~fL~l~~qli~~f~~~~-~~~l~~ll~~l~~~if~~l~~---- 795 (980)
T 3ibv_A 736 -----------MLPKVPQLISILLNSID----MNELVDVLSFISQLIHIYKDNM-MEITNRMLPTLLMRIFSSLSA---- 795 (980)
T ss_dssp -----------HTTTHHHHHHHHHHHCC----TTTHHHHHHHHHHHHHHTTTTS-HHHHHHHHHHHHHHHHHHTTC----
T ss_pred -----------HHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcC----
Confidence 33334444444443322 2224568888888988888642 112222222222111111110
Q ss_pred HHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHh-hhch-----hhhHHHHHHhHhhhhcCCCCHHHHHHHH
Q 001249 830 AERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTF-KAAF-----LPFFDELSSYLTPMWGKDKTAEERRIAI 903 (1114)
Q Consensus 830 ~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~-~~~~-----~~~~~~l~~~l~~~l~~~~~~~~r~~a~ 903 (1114)
.+..+| +....+.++.+...++..+.++. ++-+ .++++.++..+..+...-.++..+..|+
T Consensus 796 -----~~~~td--------~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~ 862 (980)
T 3ibv_A 796 -----APQGTD--------DAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSI 862 (980)
T ss_dssp ---------CC--------HHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHH
T ss_pred -----CCCCcH--------HHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHH
Confidence 001110 11123446777777888777744 3333 2456666666655433334556788899
Q ss_pred HHHHHHHhHhhh-h----hhhh-hHhHHHHHHHhccCCChhHHhhhh-HHHHHHHh
Q 001249 904 CIFDDVAEQCRE-A----ALKY-YETYLPFLLEACNDENQDVRQAAV-YGLGVCAE 952 (1114)
Q Consensus 904 ~~l~~~~~~~~~-~----~~~~-~~~i~~~ll~~l~~~~~~vr~~a~-~~lg~l~~ 952 (1114)
.++..+++..|. . +..| ++ ++|.......+++.+.+.+-. ..+|+++.
T Consensus 863 ~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~ 917 (980)
T 3ibv_A 863 ALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAG 917 (980)
T ss_dssp HHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHH
Confidence 999999988653 2 2333 45 778777777666655554432 24555543
No 33
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.70 E-value=1.4e-14 Score=171.62 Aligned_cols=515 Identities=13% Similarity=0.122 Sum_probs=331.7
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHhhh-c-CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQ-Q-DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~-~-~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
..++.++-+.+.|+|...|+.+-..+-.+.. . +...+...++.++ ++.+..+|+++...+.+..... +
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~-~s~~~~~Krl~yl~l~~~~~~~---------~ 81 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCM-QTDNLELKKLVYLYLMNYAKSQ---------P 81 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTT-SSSCHHHHHHHHHHHHHHHHHS---------H
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcccC---------c
Confidence 4567777778888998888887766554321 1 2233335555644 4778999999999999876532 4
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhh
Q 001249 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1114)
+....+.+.+.+.|.+ +++.+|..+..+++.+. ...-++.++|.+.+++.++++.+|..|..++..++...++.+
T Consensus 82 e~~~l~~n~l~kdL~~-~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 82 DMAIMAVNSFVKDCED-PNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp HHHHTTHHHHGGGSSS-SSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred hHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 4444455666666665 78999988776666553 224678889999999999999999999999999998655533
Q ss_pred hhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001249 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1114)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l 258 (1114)
. -..+++.+...|.|+ ++.||..|+.++..+...-++.. +..+.+..+..+...+.+.++..+...++++..+
T Consensus 157 ~--~~~~~~~l~~lL~d~-d~~V~~~A~~aL~~i~~~~~~~~----~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l 229 (591)
T 2vgl_B 157 E--DQGFLDSLRDLIADS-NPMVVANAVAALSEISESHPNSN----LLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229 (591)
T ss_dssp H--HHHHHHHHHHTTSCS-CHHHHHHHHHHHHHHTTSCCSCC----SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred c--cccHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhhCCCcc----chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence 2 146889999999987 99999999999999876532110 1122333333344444456777777777777665
Q ss_pred HccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcc
Q 001249 259 AGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL 338 (1114)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 338 (1114)
....+. ....+++.+...+. +.+..++..|+.++..+.......+. ........+.+.++..+. .
T Consensus 230 ~~~~~~----~~~~~l~~l~~~l~--~~~~~V~~ea~~~i~~l~~~~~~~~~---~~~~~~~~~~~~L~~L~~-~----- 294 (591)
T 2vgl_B 230 NPKDDR----EAQSICERVTPRLS--HANSAVVLSAVKVLMKFLELLPKDSD---YYNMLLKKLAPPLVTLLS-G----- 294 (591)
T ss_dssp CCCSHH----HHHHHHHHHTTCSC--SSTTHHHHHHHHHHHHSCCSCCBTTB---SHHHHHHHTHHHHHHHTT-S-----
T ss_pred CCCChH----HHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHhhccCCCHH---HHHHHHHHHHHHHHHHhc-C-----
Confidence 533322 23456666665554 35678999999988877541000111 112234455566554332 1
Q ss_pred cccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHH
Q 001249 339 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ 418 (1114)
Q Consensus 339 ~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~ 418 (1114)
+...+.++...+..+....+ +.+.+.+-.++ ...+.++.+|..++..+..++.. ..+..
T Consensus 295 ------------d~~vr~~aL~~l~~i~~~~p-~~~~~~~~~~~--~~~~d~~~Ir~~al~~L~~l~~~------~nv~~ 353 (591)
T 2vgl_B 295 ------------EPEVQYVALRNINLIVQKRP-EILKQEIKVFF--VKYNDPIYVKLEKLDIMIRLASQ------ANIAQ 353 (591)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHCC-STTTTCTTTTS--CCTTSCHHHHHHHHHHHHHTCCS------STHHH
T ss_pred ------------CccHHHHHHHHHHHHHHhCh-HHHHHHHHhhe--eccCChHHHHHHHHHHHHHHCCh------hhHHH
Confidence 12245677788888887654 43333222211 11244599999999999888754 24567
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc
Q 001249 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1114)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~ 498 (1114)
+++.+..++.+.++.+|..++++++.++..+++ ....+++.++..+.+ ....++..+..++..++...+..
T Consensus 354 iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~-----~~~~~v~~Ll~ll~~-~~~~v~~e~i~~l~~ii~~~p~~--- 424 (591)
T 2vgl_B 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ-----SAERCVSTLLDLIQT-KVNYVVQEAIVVIRDIFRKYPNK--- 424 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHHHHHHHHT-CCHHHHHHHHHHHHHHHHHSCSS---
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh-----HHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHCcch---
Confidence 888888999999999999999999999988753 345677888888888 77888888888999888765431
Q ss_pred CchHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHH
Q 001249 499 PYLDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1114)
Q Consensus 499 ~~l~~il~~L~~~l~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1114)
...+++.|...+++ ..+.++..+++++|..+..... .+.++..+.+ . -..+...+|..++.++..+..
T Consensus 425 --~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~---~-~~~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 425 --YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-----ADELLESFLE---G-FHDESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp --CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHST---T-CSSSCHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC-----HHHHHHHHHH---h-hccCCHHHHHHHHHHHHHHHh
Confidence 13345666666764 4578899999998887655432 1122222222 2 222345688888888888876
Q ss_pred HhchhhhhhhHHHHHHHHHHHhcCCCCCCC-chhhHHHHHHHHH
Q 001249 578 AVGKDKFRDDAKQVMEVLMSLQGSQMETDD-PTTSYMLQAWARL 620 (1114)
Q Consensus 578 ~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~~~l 620 (1114)
..+ +...+ .+..++.... .++++ .+|..+...++-+
T Consensus 494 ~~p-~~~~~----~i~~ll~~~~--~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 494 KKP-SETQE----LVQQVLSLAT--QDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp TCC-STTHH----HHHHHHHHHH--TTCCCHHHHHHHHHHHTTT
T ss_pred cCc-hHHHH----HHHHHHHHhh--hcCCChHHHHHHHHHHHHH
Confidence 544 21222 3333333211 12223 5777776655433
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.70 E-value=2.1e-15 Score=177.59 Aligned_cols=403 Identities=13% Similarity=0.132 Sum_probs=282.5
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccC
Q 001249 58 TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP 137 (1114)
Q Consensus 58 ~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~ 137 (1114)
++.|++.|.+ .++.+|..|+..|++++.......+ ..-....+...|++.|.++.++.+|..++.+++.++.....
T Consensus 89 i~~lv~~L~s-~~~~~~~~A~~~L~~ll~~~~~~~~---~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 89 LPQMTQQLNS-DDMQEQLSATVKFRQILSREHRPPI---DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp HHHHHHHHSC-SSHHHHHHHHHHHHHHTCCSSSCSH---HHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhCCCCCccH---HHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 5778888864 4789999999999999875311111 11122345566777777633789999999999999874211
Q ss_pred C-CC--chhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhh-hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 001249 138 E-NG--WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFI 213 (1114)
Q Consensus 138 ~-~~--w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 213 (1114)
. .. ....+|.|.+++.++++.+|+.|+.+|+.++...++.-.. ....+++.+...+.+. +..+|..|+.++..+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHHHh
Confidence 0 11 1467899999999999999999999999998753321111 1124677888888886 8999999999999998
Q ss_pred HhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCCcchhHHH
Q 001249 214 QCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRH 292 (1114)
Q Consensus 214 ~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~~~~~vr~ 292 (1114)
..-............+| .+...+.++++.++..++.+|..++...+......+. .+++.++..+.+ .+..+|.
T Consensus 244 ~~~~~~~~~~~~~~~l~----~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~--~~~~v~~ 317 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALP----TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH--ESTLVQT 317 (530)
T ss_dssp CCSSSCCCHHHHGGGHH----HHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC--SCHHHHH
T ss_pred CCCCCCCcHHHHHhHHH----HHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC--CChhhHH
Confidence 65311112222334444 4445566788999999999999999876655544443 567777777753 4678898
Q ss_pred HHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCC
Q 001249 293 LAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN 372 (1114)
Q Consensus 293 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~ 372 (1114)
.|+.++..++.. .+. ... ..+ . .
T Consensus 318 ~a~~~L~~l~~~---~~~-------~~~---------------------------------------~~~-----~---~ 340 (530)
T 1wa5_B 318 PALRAVGNIVTG---NDL-------QTQ---------------------------------------VVI-----N---A 340 (530)
T ss_dssp HHHHHHHHHTTS---CHH-------HHH---------------------------------------HHH-----H---T
T ss_pred HHHHHHHHHHcC---CHH-------HHH---------------------------------------HHH-----H---c
Confidence 898888877652 110 000 000 0 1
Q ss_pred cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhch
Q 001249 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1114)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1114)
. +++.+...+.+++|.+|..|+.+|+.++.+..+.+...+. .+++.++..|.++++.+|..|+++|+.++....+
T Consensus 341 ~----~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~ 416 (530)
T 1wa5_B 341 G----VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ 416 (530)
T ss_dssp T----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT
T ss_pred c----hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 1 3445556677889999999999999999877765544442 5778888888889999999999999999986543
Q ss_pred --hHHhh-hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc------cccCchHHH-----HHHHHHHhhcCCh
Q 001249 452 --DLQNQ-FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE------ILTPYLDGI-----VSKLLVLLQNGKQ 517 (1114)
Q Consensus 452 --~~~~~-~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~------~l~~~l~~i-----l~~L~~~l~~~~~ 517 (1114)
..... .-..+++.++..+.+ +++.++..++.+|.+++...... ...+|...+ ++.|..+..+++.
T Consensus 417 ~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~ 495 (530)
T 1wa5_B 417 RPDIIRYLVSQGCIKPLCDLLEI-ADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEND 495 (530)
T ss_dssp CTHHHHHHHHTTCHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCH
T ss_pred cHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCH
Confidence 22111 234699999999998 89999999999999998764321 123444443 6678888888899
Q ss_pred hHHHHHHHHHHHHHHh
Q 001249 518 MVQEGALTALASVADS 533 (1114)
Q Consensus 518 ~v~~~al~~l~~l~~~ 533 (1114)
.+++.+..++..+...
T Consensus 496 ~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 496 KIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHCCc
Confidence 9999988888766543
No 35
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.70 E-value=1.6e-14 Score=170.12 Aligned_cols=365 Identities=17% Similarity=0.198 Sum_probs=254.1
Q ss_pred CchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhh-hhhhhh-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcC
Q 001249 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-DTLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1114)
Q Consensus 140 ~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (1114)
.+...++.+++.+.++++..|..|+..|..++.... +..... -..+++.+...|.++.++.+|..|+.+|..+....+
T Consensus 84 ~~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp ---CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 366779999999999999999999999998875421 111111 235788889999884478999999999999886421
Q ss_pred CcchHhHH--HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHH-HHHHHHHHHHhccCCcchhHHHHH
Q 001249 218 SSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL-VDVVGSMLQIAEAESLEEGTRHLA 294 (1114)
Q Consensus 218 ~~~~~~~~--~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~ll~~~~~~~~~~~vr~~a 294 (1114)
.....+ ...+|.+++. +.++++.++..++.+|..++...+..-...+ ..+++.++.++.. .+..++..|
T Consensus 164 --~~~~~~~~~g~i~~Lv~l----L~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a 235 (530)
T 1wa5_B 164 --AQTKVVVDADAVPLFIQL----LYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS--NKPSLIRTA 235 (530)
T ss_dssp --HHHHHHHHTTCHHHHHHH----HHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS--CCHHHHHHH
T ss_pred --HHHHHHHHCCCHHHHHHH----HcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc--CCHHHHHHH
Confidence 111111 2345555544 4567899999999999999875443222111 2567777777754 467899999
Q ss_pred HHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC--C
Q 001249 295 IEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG--N 372 (1114)
Q Consensus 295 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~--~ 372 (1114)
+.++..++.... |. ........++|.++..+...+ ......+..+|..++...+. .
T Consensus 236 ~~~L~~L~~~~~--~~---~~~~~~~~~l~~L~~lL~~~d-----------------~~v~~~a~~~L~~L~~~~~~~~~ 293 (530)
T 1wa5_B 236 TWTLSNLCRGKK--PQ---PDWSVVSQALPTLAKLIYSMD-----------------TETLVDACWAISYLSDGPQEAIQ 293 (530)
T ss_dssp HHHHHHHHCCSS--SC---CCHHHHGGGHHHHHHHTTCCC-----------------HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhCCCC--CC---CcHHHHHhHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999997421 21 112344567788877764321 11344566677666632110 0
Q ss_pred cch-HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhc
Q 001249 373 TIV-PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 450 (1114)
Q Consensus 373 ~~~-~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1114)
.+. ..+++.+...+.+++|.+|..|+.+|+.++.+........+. .+++.+...|.++++.+|..|+++|+.++....
T Consensus 294 ~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~ 373 (530)
T 1wa5_B 294 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 373 (530)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 111 134556666778899999999999999999876654333332 588999999999999999999999999987544
Q ss_pred hhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc--ccccCchH--HHHHHHHHHhhcCChhHHHHHHHH
Q 001249 451 PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPYLD--GIVSKLLVLLQNGKQMVQEGALTA 526 (1114)
Q Consensus 451 ~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~l~~~l~--~il~~L~~~l~~~~~~v~~~al~~ 526 (1114)
.....-.-..++|.|+..+.+ +++.+|..|+++|.+++....+ +.. .++- .+++.|..++.+.++.++..++.+
T Consensus 374 ~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~al~a 451 (530)
T 1wa5_B 374 EQIQAVIDANLIPPLVKLLEV-AEYKTKKEACWAISNASSGGLQRPDII-RYLVSQGCIKPLCDLLEIADNRIIEVTLDA 451 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTTTCTHHH-HHHHHTTCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCCCcHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 433211235789999999988 8899999999999999987543 221 2222 378899999999999999999999
Q ss_pred HHHHHHhhhh
Q 001249 527 LASVADSSQE 536 (1114)
Q Consensus 527 l~~l~~~~~~ 536 (1114)
+..++.....
T Consensus 452 L~~l~~~~~~ 461 (530)
T 1wa5_B 452 LENILKMGEA 461 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 9999876553
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.68 E-value=2.8e-14 Score=168.14 Aligned_cols=359 Identities=14% Similarity=0.174 Sum_probs=252.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHH-HhhHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHccch
Q 001249 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF-QDLLPLMMRTLTESLNNGN-EATAQEALELLIELAGTEP 263 (1114)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~p~ll~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~ 263 (1114)
++.+...|.++ ++.+|..|+.++..++............ ...+|.+++ ++.+++ +.++..++++|..++...+
T Consensus 76 l~~lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~----lL~~~~~~~v~~~A~~~L~~l~~~~~ 150 (528)
T 4b8j_A 76 LPAMIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQ----FLTREDFPQLQFEAAWALTNIASGTS 150 (528)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHH----HHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHH----HhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 56667777886 8999999999999998754211111111 234555544 455655 8999999999999998655
Q ss_pred HHHHHHHH-HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCcccc
Q 001249 264 RFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWH 340 (1114)
Q Consensus 264 ~~~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~ 340 (1114)
......+. ..++.++..+.. .+..+|..|+.++..++.. .+.. ...+ ...++.++..+....
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~aL~~l~~~---~~~~----~~~i~~~g~l~~Ll~lL~~~~------ 215 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGS--SSDDVREQAVWALGNVAGD---SPKC----RDLVLANGALLPLLAQLNEHT------ 215 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHT---CHHH----HHHHHHTTCHHHHHHTCCTTC------
T ss_pred HHHHHHHhCCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhCC---Chhh----HHHHHHCCcHHHHHHHHhcCC------
Confidence 44333333 577888887754 4789999999999999873 2211 1112 135777777664221
Q ss_pred cCCCCCccccCCCchhhHHHHHHHHHHHcCCC--cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-
Q 001249 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGN--TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE- 417 (1114)
Q Consensus 341 ~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~- 417 (1114)
+......+..+|..++...+.. .....+++.+...+.++++.++..++.+|+.++.+........+.
T Consensus 216 ----------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~ 285 (528)
T 4b8j_A 216 ----------KLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285 (528)
T ss_dssp ----------CHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHT
T ss_pred ----------CHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 1123445667777777543211 233457777888889999999999999999999876654333333
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCC-ChhHHHHHHHHHHHhhhcCCccc
Q 001249 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEI 496 (1114)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~ 496 (1114)
.+++.++..|.++++.+|..|+++|+.++.........-.-..++|.+...+.+ + ++.++..|+++|.+++.... +.
T Consensus 286 g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~~v~~~A~~~L~nl~~~~~-~~ 363 (528)
T 4b8j_A 286 GVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ-NLKKSIKKEACWTISNITAGNK-DQ 363 (528)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTSCH-HH
T ss_pred CHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC-CCcHHHHHHHHHHHHHHHCCCH-HH
Confidence 578899999999999999999999999997544333222235789999999998 6 89999999999999987432 21
Q ss_pred ccCc-hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHH
Q 001249 497 LTPY-LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECIS 573 (1114)
Q Consensus 497 l~~~-l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~ 573 (1114)
.... -..+++.|+.++.+.+..++..++.+++.++.........|+ ..+++.|...+... ...++..++.+++
T Consensus 364 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~----d~~v~~~al~~L~ 439 (528)
T 4b8j_A 364 IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICP----DIRIVTVCLEGLE 439 (528)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS----CHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCC----CHHHHHHHHHHHH
Confidence 1111 125678888999999999999999999999987544455555 46788888887542 3457888899998
Q ss_pred HHHHHhc
Q 001249 574 LVGMAVG 580 (1114)
Q Consensus 574 ~i~~~~~ 580 (1114)
.+.....
T Consensus 440 ~l~~~~~ 446 (528)
T 4b8j_A 440 NILKVGE 446 (528)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 37
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.66 E-value=2.7e-14 Score=168.33 Aligned_cols=358 Identities=15% Similarity=0.135 Sum_probs=255.6
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC----CchhhHHHHHHhhcCCC-hhhHHHHHHHHHHhhhhhhhhhhh
Q 001249 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPEN----GWPELLPFMFQCVSSDS-VKLQESAFLIFAQLSQYIGDTLTP 180 (1114)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~----~w~~ll~~l~~~~~~~~-~~~r~~al~~l~~l~~~~~~~~~~ 180 (1114)
..+++.|.+ .++.+|..++..+..++....... .-..++|.|++++.+++ +.+|..|+.+|+.++...++....
T Consensus 77 ~~lv~~L~s-~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 77 PAMIGGVYS-DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 456777776 588899999999999987543111 11367899999998876 899999999999999754332222
Q ss_pred hH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHH--hhHHHHHHHHHHHH-hCCCHHHHHHHHHHHH
Q 001249 181 HL-KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQ--DLLPLMMRTLTESL-NNGNEATAQEALELLI 256 (1114)
Q Consensus 181 ~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~l~p~ll~~l~~~~-~~~~~~~~~~~~~~l~ 256 (1114)
.. ...++.+...|.++ ++.+|..|+.+|+++...-+ .....+. ..+|.++ ..+ .+.++.++..++.+|.
T Consensus 156 ~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~--~~~~~i~~~g~l~~Ll----~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSP--KCRDLVLANGALLPLL----AQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp HHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCH--HHHHHHHHTTCHHHHH----HTCCTTCCHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCh--hhHHHHHHCCcHHHHH----HHHhcCCCHHHHHHHHHHHH
Confidence 12 24788899999997 99999999999999986421 1111111 2344444 444 4568899999999999
Q ss_pred HHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCC
Q 001249 257 ELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD 336 (1114)
Q Consensus 257 ~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 336 (1114)
.++...+..-......+++.++..+.. .+..++..++.++..++.. .+ .....
T Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~---~~-------~~~~~--------------- 281 (528)
T 4b8j_A 229 NFCRGKPQPSFEQTRPALPALARLIHS--NDEEVLTDACWALSYLSDG---TN-------DKIQA--------------- 281 (528)
T ss_dssp HHHCSSSCCCHHHHTTHHHHHHHHTTC--CCHHHHHHHHHHHHHHTSS---CH-------HHHHH---------------
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHcC---CH-------HHHHH---------------
Confidence 998764322223345667777777643 4678888888888877652 10 00000
Q ss_pred cccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH
Q 001249 337 PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1114)
Q Consensus 337 ~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1114)
+.. ... ++.+...+.++++.+|..|+.+|+.++.+........+
T Consensus 282 ----------------------------~~~----~g~----v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 325 (528)
T 4b8j_A 282 ----------------------------VIE----AGV----CPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCII 325 (528)
T ss_dssp ----------------------------HHH----TTC----HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ----------------------------HHH----cCH----HHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 000 122 33344556778899999999999999987765443333
Q ss_pred -HHHHHHHHhcCCCC-ChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001249 417 -EQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1114)
Q Consensus 417 -~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1114)
..+++.+...|.++ ++.+|..|+|+|+.++.........-....++|.|+..+.+ +++.++..|+++|.+++....+
T Consensus 326 ~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~aL~nl~~~~~~ 404 (528)
T 4b8j_A 326 DHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT-AEFDIKKEAAWAISNATSGGSH 404 (528)
T ss_dssp TTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHSCH
T ss_pred HhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHcCCCH
Confidence 35788888888888 99999999999999987544333222345889999999998 7899999999999999987544
Q ss_pred ccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001249 495 EILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1114)
Q Consensus 495 ~~l~~~l--~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~ 536 (1114)
+. ..++ ..+++.|..++.+.+..++..++.+++.++.....
T Consensus 405 ~~-~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 405 DQ-IKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HH-HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 32 2333 35688999999999999999999999999876544
No 38
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.66 E-value=1.5e-11 Score=152.09 Aligned_cols=623 Identities=9% Similarity=0.075 Sum_probs=358.7
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHH-----------HHHHHHhhchhhhHHHHHH
Q 001249 57 LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKS-----------MLLQSIQLESAKSISKKLC 125 (1114)
Q Consensus 57 ~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~-----------~ll~~l~~e~~~~vr~~~~ 125 (1114)
++..+++.+.+ ++..+.....+|+.+...-..-....++..-+..+|+ .+.+.|.+..+..+...+-
T Consensus 139 ~l~dL~~~l~~--~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L 216 (1023)
T 4hat_C 139 FIPELIGSSSS--SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATL 216 (1023)
T ss_dssp HHHHHHHHTTT--CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34556665542 3455666666676643320000012244433333333 2333344334556666666
Q ss_pred HHHHHHHhcccCCC--CchhhHHHHH-HhhcCCChhhHHHHHHHHHHhhh-hh-hh--hhh----hhHHHHHHHH-HH--
Q 001249 126 DTVSELASNILPEN--GWPELLPFMF-QCVSSDSVKLQESAFLIFAQLSQ-YI-GD--TLT----PHLKHLHAVF-LN-- 191 (1114)
Q Consensus 126 ~~i~~ia~~~~~~~--~w~~ll~~l~-~~~~~~~~~~r~~al~~l~~l~~-~~-~~--~~~----~~~~~l~~~l-~~-- 191 (1114)
++++...+. .|-+ .-+++++.++ ..+. ++..|..|+.+|..++. .. ++ .+. ..+..++..+ ..
T Consensus 217 ~~l~s~l~W-I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~ 293 (1023)
T 4hat_C 217 ESLLRYLHW-IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM 293 (1023)
T ss_dssp HHHHHHTTT-SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHh-CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 777766553 2211 1146788888 7764 56789999999999986 22 12 122 2222333222 11
Q ss_pred --------hh--cCCCChHHHHHHHHHHHHHHHhcCCcch-HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001249 192 --------CL--TNSNNPDVKIAALNAVINFIQCLTSSAD-RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1114)
Q Consensus 192 --------~l--~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~ 260 (1114)
.+ .+..+.+....-.+.+..+.+....... .+.+.+++...++.+..+...++.++...+++.|..+.+
T Consensus 294 p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~ 373 (1023)
T 4hat_C 294 PVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVA 373 (1023)
T ss_dssp CTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Confidence 11 1111344444455566555554221100 012334444455666666667788888999999988876
Q ss_pred cc------hHHHHHHHHHHHHHHHHHhccCC------c-----------c-hhH-HHHHH-HHHHHHHHhhhccchhhhc
Q 001249 261 TE------PRFLRRQLVDVVGSMLQIAEAES------L-----------E-EGT-RHLAI-EFVITLAEARERAPGMMRK 314 (1114)
Q Consensus 261 ~~------~~~~~~~~~~l~~~ll~~~~~~~------~-----------~-~~v-r~~a~-~~l~~l~~~~~~~~~~~~~ 314 (1114)
.. ...+.+++..++..++.-+..++ . + ++. .-..+ +++..++.. .+
T Consensus 374 ~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l-------~~- 445 (1023)
T 4hat_C 374 DLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL-------NV- 445 (1023)
T ss_dssp HHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHH-------CH-
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhcc-------CH-
Confidence 32 23467888889988887665432 0 0 111 11011 344333331 01
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC---CcchHHHHHHHHHhhCC---
Q 001249 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG---NTIVPVASEQLPAYLAA--- 388 (1114)
Q Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~~--- 388 (1114)
...++.+++.+.+.+... ...| ....++.-+++.++....+ +.++|.+++.+.....+
T Consensus 446 -~~~~~~~~~~l~~~l~~~--~~~W-------------~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~ 509 (1023)
T 4hat_C 446 -IDTEEIMISKLARQIDGS--EWSW-------------HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG 509 (1023)
T ss_dssp -HHHHHHHHHHHHHHHSST--TCCH-------------HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred -HHHHHHHHHHHHHHhcCC--CCCH-------------HHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence 123344444444333221 1223 3345667777777655432 24677777777766642
Q ss_pred --CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHH-------hhhhh
Q 001249 389 --PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-------NQFHP 459 (1114)
Q Consensus 389 --~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~~~ 459 (1114)
+...+|..+++.+|..++-... -..+++.++..++.++.+++|+|..+|++++..+++.++..+. .+|++
T Consensus 510 ~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~ 588 (1023)
T 4hat_C 510 KDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ 588 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHH
Confidence 3345667788899887764321 1246889999999999999999999999999999999887663 25788
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc-ccCchHHHHHHHHHHhhc--------CC-------hhHHHHH
Q 001249 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI-LTPYLDGIVSKLLVLLQN--------GK-------QMVQEGA 523 (1114)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-l~~~l~~il~~L~~~l~~--------~~-------~~v~~~a 523 (1114)
.++..+...... -.+.-+..+..+++.++...+... ...++..+++.+...++. ++ ...--..
T Consensus 589 ~il~~l~~~~~~-l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~i 667 (1023)
T 4hat_C 589 TIIRDIQKTTAD-LQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANI 667 (1023)
T ss_dssp HHHHTHHHHHTT-SCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHH
Confidence 888888877766 566777899999999999887532 334565555544443321 11 1223456
Q ss_pred HHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCc--------cchh---hhHHHHHHH-----HHHHHHhc----hhh
Q 001249 524 LTALASVADSSQEHFQKYYDAVMPFLKAILVNATDK--------SNRM---LRAKSMECI-----SLVGMAVG----KDK 583 (1114)
Q Consensus 524 l~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~--------~~~~---lr~~a~~~l-----~~i~~~~~----~~~ 583 (1114)
+.++++++...|..|.||+..+++.+.++.+..... .... -..+.+.++ ..+.+.++ .+.
T Consensus 668 l~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~ 747 (1023)
T 4hat_C 668 IKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDD 747 (1023)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 778888999999999999999999888765442110 0000 011122222 22222222 111
Q ss_pred -hhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhcc-C-CCCccccCCCCcccc
Q 001249 584 -FRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ-L-KPDVTITSADSDNEI 660 (1114)
Q Consensus 584 -f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~-~-~~~~~~~~~~~~~~~ 660 (1114)
-...++++++.++....... .+.--..++.+++.++..+|..+.+.++.++..++..-- . +.+
T Consensus 748 ~~~~~~~~l~~~vl~dY~~~~--~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~------------ 813 (1023)
T 4hat_C 748 VVKVLVEPLLNAVLEDYMNNV--PDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKD------------ 813 (1023)
T ss_dssp HHHHTHHHHHHHHHHHHHHSC--GGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSC------------
T ss_pred HHHHhHHHHHHHHHHHHHhCC--hhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcc------------
Confidence 22345566665555222111 111234677888899999999999999998888765431 0 000
Q ss_pred cCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccc----cHHHHHHHhhhcccccCCHHHHHHHHHh
Q 001249 661 EDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFP----WIDQVAPTLVPLLKFYFHEEVRKAAVSA 736 (1114)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p----~~~~~~~~l~~~l~~~~~~~vr~~a~~a 736 (1114)
-+ .+-+.|..=.+.+..+..++...|.. .+..+++.++-.+++. +.++-..+.+.
T Consensus 814 ----~~----------------~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~-~r~~~~~~l~~ 872 (1023)
T 4hat_C 814 ----FT----------------EYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHN-NRDVEVNGLQI 872 (1023)
T ss_dssp ----SS----------------SSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCC-CHHHHHHHHHH
T ss_pred ----cc----------------cChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCC-chHHHHHHHHH
Confidence 00 11234455566888888888776643 4566777777777764 78888888888
Q ss_pred HHHHHHHHH
Q 001249 737 MPELLRSAK 745 (1114)
Q Consensus 737 l~~l~~~~~ 745 (1114)
+-.++..+.
T Consensus 873 ~~~ll~~~~ 881 (1023)
T 4hat_C 873 ALDLVKNIE 881 (1023)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 39
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.64 E-value=7e-13 Score=157.43 Aligned_cols=475 Identities=13% Similarity=0.105 Sum_probs=304.8
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHH
Q 001249 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPF 147 (1114)
Q Consensus 68 ~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~ 147 (1114)
+.+...|+++-..+..+...+ ++..-.+.+.+.+.|.+ +++.+|..+..+++.+... .-.+.+++.
T Consensus 81 s~~~~~Krl~Yl~~~~~~~~~---------~e~~~l~in~l~kDL~~-~n~~vr~lAL~~L~~i~~~----~~~~~l~~~ 146 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLDER---------QDVHLLMTNCIKNDLNH-STQFVQGLALCTLGCMGSS----EMCRDLAGE 146 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHHHSC-SSSHHHHHHHHHHHHHCCH----HHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHhcCC-CCHhHHHHHHHHHHhcCCH----HHHHHHHHH
Confidence 678889999999998887643 56556677788888886 7999999999999988642 223677999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHh
Q 001249 148 MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (1114)
Q Consensus 148 l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (1114)
+..++.++++.+|..|+.++..+....++.+ +.+++.+...+.|. ++.|+..|+.++..+...- +.....+..
T Consensus 147 l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v----~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~--~~~~~~~~~ 219 (618)
T 1w63_A 147 VEKLLKTSNSYLRKKAALCAVHVIRKVPELM----EMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERS--PDMLAHFRK 219 (618)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG----GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSH--HHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHChHHH----HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhC--hHHHHHHHH
Confidence 9999999999999999999999998766543 34566777788886 9999999999999876532 111235677
Q ss_pred hHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhc-cCCcchhHHHHHH
Q 001249 228 LLPLMMRTLTESLN-----------NGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE-AESLEEGTRHLAI 295 (1114)
Q Consensus 228 l~p~ll~~l~~~~~-----------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~-~~~~~~~vr~~a~ 295 (1114)
++|.+++.+.+... ..++-.+...+++|..++...+.. .+.+..++..++.-.. ..+.+..+...|.
T Consensus 220 ~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~ 298 (618)
T 1w63_A 220 LVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-SEAMNDILAQVATNTETSKNVGNAILYETV 298 (618)
T ss_dssp THHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH-HHTTHHHHHHHHHTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 88888888877643 236777778888888887655432 2222223322222111 1122345555565
Q ss_pred HHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcch
Q 001249 296 EFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIV 375 (1114)
Q Consensus 296 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~ 375 (1114)
.++..+.. .+......++.+...+... +...+.+|..++..++...+ ..+
T Consensus 299 ~~i~~l~~-----------~~~l~~~a~~~L~~~L~~~-----------------d~~vr~~aL~~L~~i~~~~p--~~~ 348 (618)
T 1w63_A 299 LTIMDIKS-----------ESGLRVLAINILGRFLLNN-----------------DKNIRYVALTSLLKTVQTDH--NAV 348 (618)
T ss_dssp HHHHHSCC-----------CHHHHHHHHHHHHHHHTCS-----------------STTTHHHHHHHHHHHHHHHH--HHH
T ss_pred HHHHhcCC-----------CHHHHHHHHHHHHHHHhCC-----------------CCchHHHHHHHHHHHHhhCH--HHH
Confidence 55543311 1122334455555554322 12345677788888876643 233
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHh
Q 001249 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1114)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1114)
....+.+...+.+++..+|..++.++..++... .+..+++.+..++.+.++.+|..+..+++.++..+.+.. .
T Consensus 349 ~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~------nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~-~ 421 (618)
T 1w63_A 349 QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN------NIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK-R 421 (618)
T ss_dssp GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS------STHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH-H
T ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHcccc------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH-H
Confidence 333445566778899999999999999998753 345566777777777899999999999999998876554 3
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHh
Q 001249 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGALTALASVADS 533 (1114)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~--~~~v~~~al~~l~~l~~~ 533 (1114)
.+ ++.+++.+.+ ....++..+...+..++...+ + ....++..|...+.+. ...+...+++++|..+..
T Consensus 422 ~~----v~~ll~lL~~-~~~~v~~~~~~~l~~ii~~~p-~----l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~ 491 (618)
T 1w63_A 422 WH----IDTIMRVLTT-AGSYVRDDAVPNLIQLITNSV-E----MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL 491 (618)
T ss_dssp HH----HHHHHHHHHH-TGGGSCSSHHHHHHHHHHHSC-S----THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHh-ccchhHHHHHHHHHHHHhcCh-h----HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHH
Confidence 44 5555555655 444566667777777776543 2 2244566777776642 334445689999998865
Q ss_pred hhhh----hhh---hHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCC
Q 001249 534 SQEH----FQK---YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETD 606 (1114)
Q Consensus 534 ~~~~----~~~---~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~ 606 (1114)
.... ..| .-..+++.+...+... .+...+|..++.++..++...+ + ..+.+. .++..... +.+
T Consensus 492 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~vr~~~lta~~Kl~~~~~-~-~~~~l~---~~L~~~~~---~~d 561 (618)
T 1w63_A 492 LVSGQCEEEEPIQVTEDEVLDILESVLISN--MSTSVTRGYALTAIMKLSTRFT-C-TVNRIK---KVVSIYGS---SID 561 (618)
T ss_dssp HTTCCCSSSCCCCCCHHHHHHHHHHHHHST--TCCHHHHHHHHHHHHHHHTTCS-S-CHHHHH---HHHHHHTT---CSC
T ss_pred hcccccccccccCCCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhCc-c-hHHHHH---HHHHHhcC---CCC
Confidence 4320 000 1122444555544332 2345678888888887776543 1 122222 22222221 234
Q ss_pred CchhhHHHHHHHHHH
Q 001249 607 DPTTSYMLQAWARLC 621 (1114)
Q Consensus 607 ~~~~~~~~~~~~~l~ 621 (1114)
..+|..+...+.-+.
T Consensus 562 ~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 562 VELQQRAVEYNALFK 576 (618)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 468888877766553
No 40
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.64 E-value=3.8e-13 Score=164.16 Aligned_cols=511 Identities=12% Similarity=0.053 Sum_probs=309.6
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccC
Q 001249 58 TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP 137 (1114)
Q Consensus 58 ~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~ 137 (1114)
++.+++.|.+ .+..+|..++.+++.. .. ..........|.+.|.+ .+..+|..++.+++.++.....
T Consensus 117 i~~lv~~L~~-~~~~~r~~a~~~l~~~-~~----------~~i~~g~ip~Lv~lL~~-~d~~vr~~A~~~L~~L~~~~~~ 183 (780)
T 2z6g_A 117 HPTNVQRLAE-PSQMLKHAVVNLINYQ-DD----------AELATRAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEAS 183 (780)
T ss_dssp ---------C-CSCHHHHHHHHHHHHH-HH----------HHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHhcC-ccHHHHHHHHHHHHhh-hH----------HHHHhCCHHHHHHHHCC-CCHHHHHHHHHHHHHHhCCChh
Confidence 3556666654 4567888777777643 11 12234455667777775 5889999999999999874311
Q ss_pred CC---CchhhHHHHHHhhcCC-ChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 001249 138 EN---GWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFI 213 (1114)
Q Consensus 138 ~~---~w~~ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 213 (1114)
.. .-++.++.|++.+.++ +...|..|+.+|..+.......-.-.-...++.+...|.++ ++.+|..|+.+|.++.
T Consensus 184 ~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa 262 (780)
T 2z6g_A 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSP-VDSVLFHAITTLHNLL 262 (780)
T ss_dssp HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHh
Confidence 10 1357899999988754 88999999999999876422110001125788899999997 8999999999999999
Q ss_pred HhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHH-HHHHHHHHHHhccCCcchhHHH
Q 001249 214 QCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQL-VDVVGSMLQIAEAESLEEGTRH 292 (1114)
Q Consensus 214 ~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~ll~~~~~~~~~~~vr~ 292 (1114)
...+. ....+.. ...+..+...+.+++..++..++.++..++......-.... ...++.++.++... ..+..+.
T Consensus 263 ~~~~~--~~~~v~~--~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~-~~~~~~~ 337 (780)
T 2z6g_A 263 LHQEG--AKMAVRL--AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-TYEKLLW 337 (780)
T ss_dssp HHSTT--HHHHHHH--TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTC-CCHHHHH
T ss_pred CCChh--hHHHHHH--cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-CHHHHHH
Confidence 76432 1111210 12344455556677888888888888877653322211111 13455566666543 3455666
Q ss_pred HHHHHHHHHHHhhhccchhhhcchhhH-HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC
Q 001249 293 LAIEFVITLAEARERAPGMMRKLPQFI-NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG 371 (1114)
Q Consensus 293 ~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~ 371 (1114)
.+..++..++...... ...+ ...++.++..+...+ ......+..+|..++...+.
T Consensus 338 ~a~~aL~~Ls~~~~~~-------~~i~~~g~l~~Ll~lL~~~~-----------------~~~~~~a~~~L~~L~~~~~~ 393 (780)
T 2z6g_A 338 TTSRVLKVLSVCSSNK-------PAIVEAGGMQALGLHLTDPS-----------------QRLVQNCLWTLRNLSDAATK 393 (780)
T ss_dssp HHHHHHHHHHTSTTHH-------HHHHHTTHHHHHGGGTTCSC-----------------HHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHhhcChHHH-------HHHHHhchHHHHHHHHcCCc-----------------hHHHHHHHHHHHHHhccchh
Confidence 7778888777631111 1111 235666666654321 11233456677777655443
Q ss_pred CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCC-C-hhHHHHHHHHHHHhHhh
Q 001249 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDP-H-PRVRWAAINAIGQLSTD 448 (1114)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~-~-~~vr~~a~~~l~~l~~~ 448 (1114)
......+++.+...+.+.+|.+|..|+.+|+.++.+..+...... ...++.++..+.+. + ..||..|+++|+.++..
T Consensus 394 ~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 394 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 334567888888889999999999999999999887654222221 23566666666652 3 48999999999999754
Q ss_pred hchh--HH-hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCch-HHHHHHHHHHhhcCC--------
Q 001249 449 LGPD--LQ-NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQNGK-------- 516 (1114)
Q Consensus 449 ~~~~--~~-~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l-~~il~~L~~~l~~~~-------- 516 (1114)
.... .+ .-.....+|.|++.+.+...+.++..|+++|.+++..- ..-.... ..+++.|+.++.+.+
T Consensus 474 ~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa 551 (780)
T 2z6g_A 474 HQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 551 (780)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH--HHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH--HHHHHHHHCCCHHHHHHHHHhcchhHHHHHh
Confidence 3221 00 01134678999999988333599999999999998531 1111111 134566666665433
Q ss_pred --------------hhHHHHHHHHHHHHHHhhhhhhhhhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhc
Q 001249 517 --------------QMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1114)
Q Consensus 517 --------------~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~ 580 (1114)
..++..++.+|+.++.... ....+ ...++.|..++... ...++..+..+++.++..
T Consensus 552 ~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~--~~~~l~~~~~i~~Lv~lL~~~----~~~v~~~a~~aL~~L~~~-- 623 (780)
T 2z6g_A 552 MGGTQQQFVEGVRMEEIVEACTGALHILARDIH--NRIVIRGLNTIPLFVQLLYSP----IENIQRVAAGVLCELAQD-- 623 (780)
T ss_dssp ------CCSTTCCHHHHHHHHHHHHHHHTTSHH--HHHHHHHTCCHHHHHHGGGCS----CHHHHHHHHHHHHHHHTS--
T ss_pred hccccchhhcccChHHHHHHHHHHHHHHhcChh--hHHHHHHCCcHHHHHHHHcCC----CHHHHHHHHHHHHHHhcC--
Confidence 3466677777777763211 11111 34677888777542 345677777777777521
Q ss_pred hhhhhhhHHH--HHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhc
Q 001249 581 KDKFRDDAKQ--VMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG 625 (1114)
Q Consensus 581 ~~~f~~~~~~--i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 625 (1114)
......+.+ .++.+..+.++ .+..++..+..++.+++..-+
T Consensus 624 -~~~~~~i~~~g~i~~L~~Ll~~---~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 624 -KEAAEAIEAEGATAPLTELLHS---RNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp -HHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHTTSC
T ss_pred -HHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCh
Confidence 112222222 34555565542 345689999999888876544
No 41
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.63 E-value=2.1e-13 Score=166.46 Aligned_cols=414 Identities=11% Similarity=0.085 Sum_probs=260.0
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhh-hhHHH
Q 001249 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-PHLKH 184 (1114)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~ 184 (1114)
..+++.|.+ ++..+|..++..+..+.+..+. ...+|.|..++.++++.+|+.|+.+|..++........ ...+.
T Consensus 118 ~~lv~~L~~-~~~~~r~~a~~~l~~~~~~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 118 PTNVQRLAE-PSQMLKHAVVNLINYQDDAELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp --------C-CSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred HHHHHHhcC-ccHHHHHHHHHHHHhhhHHHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 457777776 5778888888888765443332 45667777777788999999999999999876432211 11246
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchH
Q 001249 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1114)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 264 (1114)
+++.+...|.+..++.+|..|+.+|..+...-. ....+.. ...++.|..+++++++.++..++.+|..++...+.
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~---~~~~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE---GLLAIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHH---HHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch---hHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 777777777643488999999999999664311 1111111 13555666677788899999999999999876544
Q ss_pred HHHHHH-HHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCC
Q 001249 265 FLRRQL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1114)
Q Consensus 265 ~~~~~~-~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1114)
.-.... ...++.++..+.. .+..++..++.++..++.. .+.....+ .-...++.++..+.....
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~--~~~~v~~~a~~aL~~La~~---~~e~~~~i--~~~~~i~~Lv~lL~~~~~-------- 332 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYG---NQESKLII--LASGGPQALVNIMRTYTY-------- 332 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTT---CHHHHHHH--HTTTHHHHHHHHHTTCCC--------
T ss_pred hHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhcC---ChHHHHHH--HHcCCHHHHHHHHhcCCH--------
Confidence 333332 3577777887754 3567888888888777642 11100000 001345666665543211
Q ss_pred CCCccccCCCchhhHHHHHHHHHHHcCC-Ccc-hHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHH
Q 001249 344 TEDEDAGESSNYSVGQECLDRLAIALGG-NTI-VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLS 421 (1114)
Q Consensus 344 ~~~ed~~~~~~~~~a~~~l~~l~~~~~~-~~~-~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 421 (1114)
......+..++..++..-.. ..+ -..+++.+...+.+.+...+..++.+|..++...... .....+++
T Consensus 333 --------~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~ 402 (780)
T 2z6g_A 333 --------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLG 402 (780)
T ss_dssp --------HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHH
T ss_pred --------HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHH
Confidence 01122345566666532100 001 1124566777778888899999999999998765431 12457889
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCC-hhHHHHHHHHHHHhhhcCCccc-ccC
Q 001249 422 MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQN-PRVQAHAASAVLNFSENCTPEI-LTP 499 (1114)
Q Consensus 422 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~-~~v~~~a~~al~~l~~~~~~~~-l~~ 499 (1114)
.++..+.+.++.+|..|+++|+.++.........-.-...++.+++.+.+..+ ..++..|+.+|.+++....... ...
T Consensus 403 ~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~ 482 (780)
T 2z6g_A 403 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQN 482 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999986532222111234678888888865223 3899999999999976433210 000
Q ss_pred --chHHHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHhhhhhhhhhH-hhhhHHHHHHHhh
Q 001249 500 --YLDGIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQKYY-DAVMPFLKAILVN 555 (1114)
Q Consensus 500 --~l~~il~~L~~~l~~~~~-~v~~~al~~l~~l~~~~~~~~~~~~-~~i~~~L~~~l~~ 555 (1114)
.-...++.|..++.+++. .++..++.+|+.++...... .... ..++|.|...+..
T Consensus 483 ~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~ 541 (780)
T 2z6g_A 483 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVR 541 (780)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHh
Confidence 012347788888887774 99999999999998532221 2222 3467777777754
No 42
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.63 E-value=8.8e-10 Score=135.41 Aligned_cols=742 Identities=12% Similarity=0.137 Sum_probs=381.9
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccC---CCCchhh
Q 001249 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP---ENGWPEL 144 (1114)
Q Consensus 68 ~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~---~~~w~~l 144 (1114)
+++++.|+.|-..|.+.-.. .+.|. .+.+.|....+..+|.-++.++....++.+. ...-..+
T Consensus 39 ~p~~~~r~qA~~~L~q~q~s--p~aw~------------~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~L 104 (1073)
T 3gjx_A 39 HGEGAQQRMAQEVLTHLKEH--PDAWT------------RVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGI 104 (1073)
T ss_dssp CSSHHHHHHHHHHHHTSSCC--SCHHH------------HHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcC--chHHH------------HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHH
Confidence 44677899999999774332 22342 2223333445788999888888888775332 1112233
Q ss_pred HHHHHHhhc----C-----CChhhHHHHHHHHHHhhhhh-hhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 001249 145 LPFMFQCVS----S-----DSVKLQESAFLIFAQLSQYI-GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (1114)
Q Consensus 145 l~~l~~~~~----~-----~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 214 (1114)
-..+++++. + .++..+..-..++..++... ++. ++.+++-+.+.++. ++..+...+..+..+.+
T Consensus 105 R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~----Wp~fi~dLv~~~~~--~~~~~~~~L~IL~~L~E 178 (1073)
T 3gjx_A 105 KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH----WPTFISDIVGASRT--SESLCQNNMVILKLLSE 178 (1073)
T ss_dssp HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT----CTTHHHHHHHHHHH--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh----ccHHHHHHHHHhCC--CHHHHHHHHHHHHHHHH
Confidence 344444432 2 13445555556666666553 333 33344444444433 45566777888887776
Q ss_pred hcCCc-------c----hHhHHHhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHccch-HHHHHHHHHHHHHH-HHH
Q 001249 215 CLTSS-------A----DRDRFQDLLPLMMRTLTESLN-NGNEATAQEALELLIELAGTEP-RFLRRQLVDVVGSM-LQI 280 (1114)
Q Consensus 215 ~~~~~-------~----~~~~~~~l~p~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~l~~~l-l~~ 280 (1114)
.+.+. . -.+.+...+|.+++.+..+++ ..+++....+++++..+++-.+ ..+.. ..+++.+ ...
T Consensus 179 EV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~--~~ll~~L~~~~ 256 (1073)
T 3gjx_A 179 EVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFE--TKLISTLIYKF 256 (1073)
T ss_dssp HHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHS--SSHHHHHHHHT
T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhcc--chHHHHHHHHh
Confidence 63221 0 122344556777777777664 3467777778888887765332 21111 2455555 344
Q ss_pred hccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHH----hhcCCCC-CcccccCCCCCccccC----
Q 001249 281 AEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMS----MLLDIED-DPLWHSAETEDEDAGE---- 351 (1114)
Q Consensus 281 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~----~l~~~~~-~~~~~~~~~~~ed~~~---- 351 (1114)
+ .++++|..|++++..++..+ .+ .....+..++..++. .+....+ .+.|...+++|++--.
T Consensus 257 L----~~~~~r~aA~dcL~eIv~k~--~~----~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~ 326 (1073)
T 3gjx_A 257 L----NVPMFRNVSLKCLTEIAGVS--VS----QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSL 326 (1073)
T ss_dssp S----SSHHHHHHHHHHHHHHHHSC--SG----GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHH
T ss_pred c----CChHHHHHHHHHHHHHHhcc--cc----chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHH
Confidence 4 25679999999999998731 11 112223333333332 2211101 0112222111111000
Q ss_pred ----------------CCchhhHHHHHHHHHHH--cCCCcchHHHHHH---HHHhhC--C-----CC----------hhH
Q 001249 352 ----------------SSNYSVGQECLDRLAIA--LGGNTIVPVASEQ---LPAYLA--A-----PE----------WQK 393 (1114)
Q Consensus 352 ----------------~~~~~~a~~~l~~l~~~--~~~~~~~~~l~~~---l~~~l~--~-----~~----------~~~ 393 (1114)
.........++..+... .+..+++...+++ +.+.+- . .+ ...
T Consensus 327 ~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~ 406 (1073)
T 3gjx_A 327 FLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPP 406 (1073)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCH
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchh
Confidence 00000001111111111 1112223332222 111110 0 01 011
Q ss_pred HHHH-HHHH----HHHHhhc------------------------H-----HHHHHh------------HHHHHHHHHhcC
Q 001249 394 HHAA-LIAL----AQIAEGC------------------------A-----KVMVKN------------LEQVLSMVLNSF 427 (1114)
Q Consensus 394 r~aa-l~~l----~~l~~~~------------------------~-----~~~~~~------------l~~i~~~l~~~l 427 (1114)
|... .-.+ ..+.... . +.+++. +..+++.+.+.+
T Consensus 407 ~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~ 486 (1073)
T 3gjx_A 407 RRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQV 486 (1073)
T ss_dssp HHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 1111 1111 1111100 0 011111 111223333222
Q ss_pred C--CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCC-----ChhHHHHHHHHHHHhhhcCCcccccCc
Q 001249 428 R--DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-----NPRVQAHAASAVLNFSENCTPEILTPY 500 (1114)
Q Consensus 428 ~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-----~~~v~~~a~~al~~l~~~~~~~~l~~~ 500 (1114)
. ..++..+.+++|++|.++..+.+.....+++.+++.|+..... + .+.++...|+.++.+.+-.... ..|
T Consensus 487 ~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~-~~~kd~k~~vas~i~~vlgrY~~wl~~h--~~~ 563 (1073)
T 3gjx_A 487 NGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQ-KRGKDNKAIIASNIMYIVGQYPRFLRAH--WKF 563 (1073)
T ss_dssp TSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH-SCSHHHHHHHHHHHHHHHHHCHHHHHHC--HHH
T ss_pred cCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccc-ccccchhHHHHHHHHHHHhhhHHHHHhC--HHH
Confidence 3 3568999999999999987777655457899999999877654 2 3456677778888877655422 358
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhh--------hhhHhhhhHHHHHHHhhccCccchhhhHHHHHHH
Q 001249 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF--------QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (1114)
Q Consensus 501 l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~--------~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l 572 (1114)
++.++..++..+.+.++.|++.|+.++..++..++..+ .||++.++..+..+...-.. .-....++++
T Consensus 564 L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~----~~~~~lyeav 639 (1073)
T 3gjx_A 564 LKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQP----QQVHTFYEAV 639 (1073)
T ss_dssp HHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCH----HHHHHHHHHH
Confidence 99999999999999999999999999999999999876 35777777777776544322 1233458899
Q ss_pred HHHHHHhchhh-hhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccc
Q 001249 573 SLVGMAVGKDK-FRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTI 651 (1114)
Q Consensus 573 ~~i~~~~~~~~-f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~ 651 (1114)
|.++.++|.+. -..++..+|+.... .|..+....+.+.. .+
T Consensus 640 ~~vi~~~p~~~~~~~~i~~Lm~~~~~------------------~w~~l~~~~~~~~~------------~~-------- 681 (1073)
T 3gjx_A 640 GYMIGAQTDQTVQEHLIEKYMLLPNQ------------------VWDSIIQQATKNVD------------IL-------- 681 (1073)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTHHHHH------------------HHHHHHHHHHHCGG------------GG--------
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHHH------------------HHHHHHHHhhcCch------------hc--------
Confidence 99998888543 23334444443322 23333322111100 00
Q ss_pred cCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHH
Q 001249 652 TSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRK 731 (1114)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~ 731 (1114)
.+.+ .+..=..-+++...++.++|..|.|++..+.+.++...+.+ +..+..
T Consensus 682 ------------~d~~----------------~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~-s~~i~~ 732 (1073)
T 3gjx_A 682 ------------KDPE----------------TVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKCL-SENISA 732 (1073)
T ss_dssp ------------GCHH----------------HHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred ------------cChH----------------HHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 0000 00111122456667778888888888887777655443221 112211
Q ss_pred HHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCH-----H
Q 001249 732 AAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDE-----G 806 (1114)
Q Consensus 732 ~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~-----~ 806 (1114)
+. .. .|......+ ..+. ++. ++.++++-+...+ +..-+. .
T Consensus 733 ~v--------~~------~g~~~~~~~-~~~~---------~r~--------ik~eil~l~~~~i---~~~~~~~~v~~~ 777 (1073)
T 3gjx_A 733 AI--------QA------NGEMVTKQP-LIRS---------MRT--------VKRETLKLISGWV---SRSNDPQMVAEN 777 (1073)
T ss_dssp HH--------HH------HCGGGGSSH-HHHH---------HHH--------HHHHHHHHHHHHH---TTCSCHHHHHHH
T ss_pred HH--------Hh------CCchhhccH-HHHH---------HHH--------HHHHHHHHHHHHH---hcCCCHHHHHHH
Confidence 10 00 000000000 0000 000 1111222222221 111111 1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHHHHHHHHHhhhchhhhHHH----H
Q 001249 807 QVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDE----L 882 (1114)
Q Consensus 807 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~----l 882 (1114)
.++++++.+. ..+.. ..++ . .+.. +..+...++..+|..+.|.+.. +
T Consensus 778 ~i~pl~~~vl---~dY~~---------~~p~--~-----------r~~e----vL~l~s~iv~k~~~~~~~~~~~il~~v 828 (1073)
T 3gjx_A 778 FVPPLLDAVL---IDYQR---------NVPA--A-----------REPE----VLSTMAIIVNKLGGHITAEIPQIFDAV 828 (1073)
T ss_dssp TSHHHHHHTH---HHHHH---------SCGG--G-----------CCTH----HHHHHHHHHHHHGGGTGGGHHHHHHHH
T ss_pred hHHHHHHHHH---HHHhc---------CCcc--c-----------ccHH----HHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 1223333322 11111 0000 0 0112 4556666666666665555444 4
Q ss_pred HHhHhhhhcCC--CCHHHHHHHHHHHHHHHhHhhhhhhh----hhHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCC
Q 001249 883 SSYLTPMWGKD--KTAEERRIAICIFDDVAEQCREAALK----YYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGS 956 (1114)
Q Consensus 883 ~~~l~~~l~~~--~~~~~r~~a~~~l~~~~~~~~~~~~~----~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~ 956 (1114)
+..-+.+++++ ..++.|..-+..+..+..+|...+.. .+..++..++=+++....++-..+...+-.+..+...
T Consensus 829 f~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~ 908 (1073)
T 3gjx_A 829 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ 908 (1073)
T ss_dssp HHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhc
Confidence 44445666544 35888999999999999998776544 4566777778888999999999888888777765432
Q ss_pred -------CchHHHHHHHHHHHHhhcCCCCC
Q 001249 957 -------VVKPLVGEALSRLNVVIRHPNAL 979 (1114)
Q Consensus 957 -------~~~~~~~~~l~~L~~~l~~~~~~ 979 (1114)
-+..|+..+++-+..++++..++
T Consensus 909 ~~~~~~~F~~~~~~~~~~~i~~v~td~~h~ 938 (1073)
T 3gjx_A 909 EEAAAQSFYQTYFCDILQHIFSVVTDTSHT 938 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCTTCG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCchHh
Confidence 24457778888888888877543
No 43
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.56 E-value=5.5e-12 Score=149.74 Aligned_cols=449 Identities=13% Similarity=0.109 Sum_probs=276.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~---~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
..+..+++.+.|+|.+.|+-+.-.+..+.+.+|+.. ....+.+. ++.++.+|.+|...|.++.. +
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~-~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-----------~ 137 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH-LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-----------S 137 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-----------H
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-----------H
Confidence 456677888889999999999999988877677742 33334443 27889999999999998642 4
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhh--
Q 001249 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD-- 176 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~-- 176 (1114)
+..+.+...+.+.+.+ +++.||++++.+++.+.+.. | +.-+.+++.+..++.+.++.++..|+.+|..+++..++
T Consensus 138 ~~~~~l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~-p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~ 214 (618)
T 1w63_A 138 EMCRDLAGEVEKLLKT-SNSYLRKKAALCAVHVIRKV-P-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML 214 (618)
T ss_dssp HHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHC-G-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHC-h-HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH
Confidence 5556777778888887 79999999999999998853 3 33456777788888899999999999999999876543
Q ss_pred -hhhhhHHHHHHHHHHhhcC----------CCChHHHHHHHHHHHHHHHhcCCcchHhHH--------------------
Q 001249 177 -TLTPHLKHLHAVFLNCLTN----------SNNPDVKIAALNAVINFIQCLTSSADRDRF-------------------- 225 (1114)
Q Consensus 177 -~~~~~~~~l~~~l~~~l~~----------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-------------------- 225 (1114)
.+...++.++..+.+.... ..++-.+...++++..+...-+ ...+.+
T Consensus 215 ~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~--~~~~~~~~~L~~l~~~~~~~~~~~~a 292 (618)
T 1w63_A 215 AHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD--DSSEAMNDILAQVATNTETSKNVGNA 292 (618)
T ss_dssp HHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH--HHHHTTHHHHHHHHHTSCCSSTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHhccccccchHHH
Confidence 2333344444444332210 0145555666666655443210 000000
Q ss_pred ---------------HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhH
Q 001249 226 ---------------QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGT 290 (1114)
Q Consensus 226 ---------------~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~v 290 (1114)
..+.....+.+...+.+.++.++..++..+..++...|..+.+|...++. ++. +.+..+
T Consensus 293 V~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~----~l~--d~d~~I 366 (618)
T 1w63_A 293 ILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVD----CLK--DLDVSI 366 (618)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHH----GGG--SSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHH----Hcc--CCChhH
Confidence 01111244555566677788888888888888888888777777665554 333 356789
Q ss_pred HHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcC
Q 001249 291 RHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG 370 (1114)
Q Consensus 291 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~ 370 (1114)
|..|++++..++.. .. +..+++.+...+.+.+ ......+...+..++..++
T Consensus 367 r~~alelL~~l~~~--------~n----v~~iv~eL~~~l~~~d-----------------~e~r~~~v~~I~~la~k~~ 417 (618)
T 1w63_A 367 KRRAMELSFALVNG--------NN----IRGMMKELLYFLDSCE-----------------PEFKADCASGIFLAAEKYA 417 (618)
T ss_dssp HHHHHHHHHHHCCS--------SS----THHHHHHHHHHHHHCC-----------------HHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHccc--------cc----HHHHHHHHHHHHHhCC-----------------HHHHHHHHHHHHHHHHHhC
Confidence 99999988888762 01 2344455555543211 1134456777888887765
Q ss_pred CCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhc
Q 001249 371 GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 450 (1114)
Q Consensus 371 ~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1114)
+. ....++.+.+.+.+..-.++..++..+..+....++.-...+..++..+.... .+..+..+++|++|+++..+.
T Consensus 418 ~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~--~~~~~~~~~~wilGEy~~~i~ 493 (618)
T 1w63_A 418 PS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDY--SQQPLVQVAAWCIGEYGDLLV 493 (618)
T ss_dssp CC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCC--SCSHHHHHHHHHHHHHHHHHT
T ss_pred cc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHhhhHHHhc
Confidence 22 33344444444443333344445555556555443222222333344333221 223344579999999997653
Q ss_pred hhHHh------hhhhhhHHHHHhhcc--CCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHH
Q 001249 451 PDLQN------QFHPQVLPALAGAMD--DFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEG 522 (1114)
Q Consensus 451 ~~~~~------~~~~~il~~l~~~l~--~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~ 522 (1114)
..... ..-..+++.+...++ . .++.+|..+..++..+....+. ..+.+...|-.+.++.+.++|..
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~vr~~~lta~~Kl~~~~~~-----~~~~l~~~L~~~~~~~d~evrdR 567 (618)
T 1w63_A 494 SGQCEEEEPIQVTEDEVLDILESVLISNM-STSVTRGYALTAIMKLSTRFTC-----TVNRIKKVVSIYGSSIDVELQQR 567 (618)
T ss_dssp TCCCSSSCCCCCCHHHHHHHHHHHHHSTT-CCHHHHHHHHHHHHHHHTTCSS-----CHHHHHHHHHHHTTCSCHHHHHH
T ss_pred ccccccccccCCCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHhCcc-----hHHHHHHHHHHhcCCCCHHHHHH
Confidence 21000 001123333333332 3 5789999999999998876542 13334444444567788999999
Q ss_pred HHHHHHHHHH
Q 001249 523 ALTALASVAD 532 (1114)
Q Consensus 523 al~~l~~l~~ 532 (1114)
|...+..+..
T Consensus 568 A~~y~~ll~~ 577 (618)
T 1w63_A 568 AVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcC
Confidence 9988777653
No 44
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.55 E-value=5.1e-12 Score=146.86 Aligned_cols=361 Identities=16% Similarity=0.194 Sum_probs=243.3
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhhhhhh-hhhhhhH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchH
Q 001249 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-DTLTPHL-KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1114)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 222 (1114)
++.+++.+.+++...+..|...++.+...-. +.+...+ ..++|.|+++|....++.++..|+.+|.+++..-+ ...
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~--e~~ 136 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS--EQT 136 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH--HHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH--HHH
Confidence 7888999999999999889988887764321 1122222 24789999999765478999999999999986421 111
Q ss_pred hHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCCcc---hhHHHHHHHHH
Q 001249 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLE---EGTRHLAIEFV 298 (1114)
Q Consensus 223 ~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~~~---~~vr~~a~~~l 298 (1114)
..+.. ...+..|..++.+++++++..++++|..++...+..-..... ..++.++.++...+.+ ..+...+...+
T Consensus 137 ~~vv~--~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 137 KAVVD--GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 11111 023444555567889999999999999998755432211111 3456666666543322 23455677777
Q ss_pred HHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcc----
Q 001249 299 ITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTI---- 374 (1114)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~---- 374 (1114)
..++..+... .....+..++|.+...+...++ .....+..+|..++..- +..
T Consensus 215 ~nl~~~~~~~-----~~~~~~~~~lp~L~~LL~~~~~-----------------~v~~~A~~aL~~L~~~~--~~~~~~i 270 (510)
T 3ul1_B 215 SNLCRNKNPA-----PPLDAVEQILPTLVRLLHHNDP-----------------EVLADSCWAISYLTDGP--NERIEMV 270 (510)
T ss_dssp HHHHCCCSSC-----CCHHHHHHHHHHHHHHTTCSCH-----------------HHHHHHHHHHHHHTSSC--HHHHHHH
T ss_pred HHHhhcccch-----hHHHHHHhHHHHHHHHHhcCCH-----------------HHHHHHHHHHHHHhhch--hhhHHHH
Confidence 7777642111 1123456788888887643211 12334555666555321 111
Q ss_pred -hHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchh
Q 001249 375 -VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (1114)
Q Consensus 375 -~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 452 (1114)
-..+++.+.+++.++++.++..++.+++.++.+........+. ..++.+...+.++++.+|..|+|+|+.++......
T Consensus 271 ~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~ 350 (510)
T 3ul1_B 271 VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQ 350 (510)
T ss_dssp HTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred HhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHH
Confidence 1124556667788999999999999999998876543322222 46778888999999999999999999998755443
Q ss_pred HHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001249 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1114)
Q Consensus 453 ~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l--~~il~~L~~~l~~~~~~v~~~al~~l~~l 530 (1114)
...-.-..++|.++..+.+ .+..+|..|+++|.+++.....+.. .++ ...++.|..++..++..++..++.+|..+
T Consensus 351 ~~~v~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~~~~~~~~-~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 351 IQQVVNHGLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGGTVEQI-VYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCCHHHH-HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHccCCHHHH-HHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3222345789999999998 8999999999999999987654322 122 24578889999999999999999999998
Q ss_pred HHhhh
Q 001249 531 ADSSQ 535 (1114)
Q Consensus 531 ~~~~~ 535 (1114)
.....
T Consensus 429 l~~~~ 433 (510)
T 3ul1_B 429 FQAAE 433 (510)
T ss_dssp HHHHH
T ss_pred HHHhH
Confidence 87644
No 45
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.55 E-value=5e-12 Score=147.94 Aligned_cols=364 Identities=16% Similarity=0.181 Sum_probs=245.6
Q ss_pred hhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhh-hhhhhh-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCc
Q 001249 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-DTLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1114)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 219 (1114)
...++.+++.+.+++...+..|+..+..+...-. +.+... -..++|.|++.|....++.++..|+.+|.+++..-+.
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~- 153 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE- 153 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH-
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH-
Confidence 4568888999999999998888888887653321 112111 2357889999997554789999999999999864311
Q ss_pred chHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCCc---chhHHHHHH
Q 001249 220 ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESL---EEGTRHLAI 295 (1114)
Q Consensus 220 ~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~~---~~~vr~~a~ 295 (1114)
....+.. ...+..|..++.+++++++..++++|..++...+..-...+. ..++.++.++...+. ...+...+.
T Consensus 154 -~~~~vv~--~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 154 -QTKAVVD--GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp -HHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred -HHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 1111111 023444555677889999999999999998755432221111 356666776654332 223455677
Q ss_pred HHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcc-
Q 001249 296 EFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTI- 374 (1114)
Q Consensus 296 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~- 374 (1114)
..+..++...... .....+..++|.|...+...++ .....+..+|..++..- +..
T Consensus 231 ~~L~nl~~~~~~~-----~~~~~~~~~lp~L~~LL~~~~~-----------------~v~~~a~~aL~~l~~~~--~~~~ 286 (529)
T 3tpo_A 231 WTLSNLCRNKNPA-----PPLDAVEQILPTLVRLLHHNDP-----------------EVLADSCWAISYLTDGP--NERI 286 (529)
T ss_dssp HHHHHHHCCCTTC-----CCHHHHHHHHHHHHHHTTSSCH-----------------HHHHHHHHHHHHHHSSC--HHHH
T ss_pred HHHHHHHhcccch-----hhHHHHhhHHHHHHHHhcCCcH-----------------HHHHHHHHHHHHhhhhh--hhhH
Confidence 7777777642111 1123456788888887653211 12334555665555321 111
Q ss_pred ----hHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhh
Q 001249 375 ----VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDL 449 (1114)
Q Consensus 375 ----~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 449 (1114)
-..+++.+..++.++++.++..++.+++.++.+........+. ..++.+...+.++++.+|..|+|+|+.++..-
T Consensus 287 ~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~ 366 (529)
T 3tpo_A 287 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 366 (529)
T ss_dssp HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhccc
Confidence 1124455667788999999999999999999876543322222 46788888999999999999999999998764
Q ss_pred chhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCch--HHHHHHHHHHhhcCChhHHHHHHHHH
Q 001249 450 GPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTAL 527 (1114)
Q Consensus 450 ~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l--~~il~~L~~~l~~~~~~v~~~al~~l 527 (1114)
......-.-..++|.++..+.+ ++..+|..|+++|.+++.....+.. .++ ..+++.|+.++..++..++..++.+|
T Consensus 367 ~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nl~~~~~~~~~-~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL 444 (529)
T 3tpo_A 367 QDQIQQVVNHGLVPFLVGVLSK-ADFKTQKAAAWAITNYTSGGTVEQI-VYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 444 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCHHHH-HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCHHHH-HHHHHCcCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4433222345789999999998 8999999999999999887654322 122 13578899999999999999999999
Q ss_pred HHHHHhhh
Q 001249 528 ASVADSSQ 535 (1114)
Q Consensus 528 ~~l~~~~~ 535 (1114)
..+.....
T Consensus 445 ~nil~~~~ 452 (529)
T 3tpo_A 445 SNIFQAAE 452 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 99886543
No 46
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.54 E-value=7.7e-12 Score=150.55 Aligned_cols=476 Identities=13% Similarity=0.064 Sum_probs=295.8
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC---CchhhHHHHHHhhcCC-ChhhHHHHHHHHHHhhhhhhhhhhh
Q 001249 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTP 180 (1114)
Q Consensus 105 ~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~---~w~~ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~ 180 (1114)
...|...|.+ .++.+|..++.+++.++...-... .-+..++.+++.+.++ +...|..+..+|..++........-
T Consensus 16 i~~Lv~lL~~-~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 16 IPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp HHHHHHHHTC-SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 3456666776 588999999999999987531110 1246789999988764 7889999999999887653211110
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001249 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1114)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~ 260 (1114)
.-...++.+...+.++ ++.+|..|+.+|.++....+. ....+.. ...+..+...+.++++..+..++.+|..++.
T Consensus 95 ~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~--~~~~v~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEG--AKMAVRL--AGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTT--HHHHHHH--TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcch--hHHHHHH--CCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 1124788888999987 899999999999999876421 1111110 1344455555667788888888888888885
Q ss_pred cchHHHHHHH-HHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhH-HHHHHHHHHhhcCCCCCcc
Q 001249 261 TEPRFLRRQL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI-NRLFAILMSMLLDIEDDPL 338 (1114)
Q Consensus 261 ~~~~~~~~~~-~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~ 338 (1114)
..++.-.... ...++.++.++... ..+.++..++.++..++.. +.. + ..++ ...++.++..+...+
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~~a~~~L~nLs~~----~~~-~--~~l~~~g~l~~L~~ll~~~~---- 237 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVC----SSN-K--PAIVEAGGMQALGLHLTDPS---- 237 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHTTC----TTH-H--HHHHHTTHHHHHHTTTTCSC----
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcC-ChHHHHHHHHHHHHHHhcC----ccc-H--HHHHHCCCHHHHHHHHhcCC----
Confidence 4332211111 14566666666543 3466777888888888753 211 1 1111 235666666554321
Q ss_pred cccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH-H
Q 001249 339 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-E 417 (1114)
Q Consensus 339 ~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~ 417 (1114)
......+..+|..++...+.......+++.+...+.+.++.+|..++.+|+.++.+..+...... .
T Consensus 238 -------------~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~ 304 (644)
T 2z6h_A 238 -------------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 304 (644)
T ss_dssp -------------HHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred -------------HHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 11344566677777765443344556788888889999999999999999999886543222222 1
Q ss_pred HHHHHHHhcCCCC--ChhHHHHHHHHHHHhHhhhchh--HHh-hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcC
Q 001249 418 QVLSMVLNSFRDP--HPRVRWAAINAIGQLSTDLGPD--LQN-QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1114)
Q Consensus 418 ~i~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~-~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1114)
..++.++..+.+. .+.+|..|+++|+.++...+.. .+. -.....++.+.+.|.+..++.++..|+++|.++...-
T Consensus 305 g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 305 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384 (644)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH
Confidence 3567777777653 3799999999999997543221 111 1234678999999998334789999999999997642
Q ss_pred CcccccCc-hHHHHHHHHHHhhcCC----------------------hhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHH
Q 001249 493 TPEILTPY-LDGIVSKLLVLLQNGK----------------------QMVQEGALTALASVADSSQEHFQKYYDAVMPFL 549 (1114)
Q Consensus 493 ~~~~l~~~-l~~il~~L~~~l~~~~----------------------~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L 549 (1114)
.. .... -..+++.|..++.+.+ ..++..++.++..++........-.-...++.|
T Consensus 385 ~~--~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~L 462 (644)
T 2z6h_A 385 AN--HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 462 (644)
T ss_dssp GG--HHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHH
T ss_pred HH--HHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHH
Confidence 11 1111 1235666666665532 456667777777776433211111123577888
Q ss_pred HHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHH--HHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHH
Q 001249 550 KAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK--QVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKC 623 (1114)
Q Consensus 550 ~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~--~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 623 (1114)
...+... ...++..+..+++.++.. ......+. ..++.+..+..+ .+..++..+..+++.++..
T Consensus 463 v~lL~~~----~~~v~~~a~~aL~~l~~~---~~~~~~i~~~g~l~~L~~ll~~---~~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 463 VQLLYSP----IENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHS---RNEGVATYAAAVLFRMSED 528 (644)
T ss_dssp HHHTTCS----CHHHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHHTTC---SCHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCC----CHHHHHHHHHHHHHHHcC---HHHHHHHHHcCChhHHHHHHcC---CCHHHHHHHHHHHHHHhcc
Confidence 8877542 234677777777776532 11111111 123445554442 3456888888888877544
No 47
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.54 E-value=5.9e-12 Score=151.54 Aligned_cols=468 Identities=12% Similarity=0.086 Sum_probs=300.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCc--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcc
Q 001249 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDP--------DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLW 93 (1114)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p--------~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w 93 (1114)
..+..++..+.++|..+|..|...|..+....+ ...+..|+..|.++.++++|..|+..|+++...
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~------ 87 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH------ 87 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS------
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC------
Confidence 356666666778899999999999988765322 134678888888777899999999999975432
Q ss_pred cCCCHHHHH-----HHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC-C--chhhHHHHHHhhcCCChhhHHHHHH
Q 001249 94 PRLSLHTQS-----SLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN-G--WPELLPFMFQCVSSDSVKLQESAFL 165 (1114)
Q Consensus 94 ~~l~~~~~~-----~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~-~--w~~ll~~l~~~~~~~~~~~r~~al~ 165 (1114)
++.+. .....|++.|.+ ++..+|..++.++..++...-... . -...+|.|.+.++++++..+..++.
T Consensus 88 ----~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~ 162 (644)
T 2z6h_A 88 ----REGLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 162 (644)
T ss_dssp ----HHHHHHHHTTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred ----hhhHHHHHHcCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHH
Confidence 12222 234566777776 688999999999999987531111 1 1467899999999998888888888
Q ss_pred HHHHhhhhhhhhhhh-hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCC
Q 001249 166 IFAQLSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGN 244 (1114)
Q Consensus 166 ~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~ 244 (1114)
+|..++...++.-.. .-...++.+...+.+.....++..++.++..+...- .....+.. ...+..+...+.+++
T Consensus 163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~---~~~~~l~~--~g~l~~L~~ll~~~~ 237 (644)
T 2z6h_A 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVE--AGGMQALGLHLTDPS 237 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT---THHHHHHH--TTHHHHHHTTTTCSC
T ss_pred HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc---ccHHHHHH--CCCHHHHHHHHhcCC
Confidence 998888532221110 112356777777877645677888888888876421 11222211 023445555566778
Q ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH
Q 001249 245 EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA 324 (1114)
Q Consensus 245 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 324 (1114)
..++..++.+|..++...+.. .....+++.++..+.. .+.++|..|+.++..++.. .+.....+ .-...++
T Consensus 238 ~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~--~d~~v~~~a~~aL~~L~~~---~~~~~~~v--~~~g~v~ 308 (644)
T 2z6h_A 238 QRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGS--DDINVVTCAAGILSNLTCN---NYKNKMMV--CQVGGIE 308 (644)
T ss_dssp HHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTT---CHHHHHHH--HHTTHHH
T ss_pred HHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcC--CCHHHHHHHHHHHHHHHcC---CHHHHHHH--HHcCCHH
Confidence 899999999999998754331 1233567777777753 4688999999999999873 11110000 0122566
Q ss_pred HHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCc-----c-hHHHHHHHHHhhCCC-ChhHHHHH
Q 001249 325 ILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNT-----I-VPVASEQLPAYLAAP-EWQKHHAA 397 (1114)
Q Consensus 325 ~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~-----~-~~~l~~~l~~~l~~~-~~~~r~aa 397 (1114)
.++..+....+. ......+..+|..++...+... + ....++.+.+.+.++ +|..|..+
T Consensus 309 ~Lv~lL~~~~~~---------------~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 309 ALVRTVLRAGDR---------------EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp HHHHHHHHHTTC---------------HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHHccCCc---------------HHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 666665432110 1133445566666653222100 1 123566677777776 48999999
Q ss_pred HHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCC----------------------hhHHHHHHHHHHHhHhhhchhHH
Q 001249 398 LIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPH----------------------PRVRWAAINAIGQLSTDLGPDLQ 454 (1114)
Q Consensus 398 l~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~----------------------~~vr~~a~~~l~~l~~~~~~~~~ 454 (1114)
+.+++.++.+.... .... ..+++.++..+.+.+ ..++..++.+|..++..-....
T Consensus 374 ~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~- 451 (644)
T 2z6h_A 374 VGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI- 451 (644)
T ss_dssp HHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHH-
T ss_pred HHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHH-
Confidence 99999998754321 1111 134555555555433 3455666666666664321110
Q ss_pred hhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchH--HHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001249 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD--GIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1114)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~--~il~~L~~~l~~~~~~v~~~al~~l~~l~~ 532 (1114)
.-.-...++.++..+.+ +++.++..++.+|.++... ++ ....+. ..++.|..++.++++.+|..|..+++.++.
T Consensus 452 ~l~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~--~~-~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 452 VIRGLNTIPLFVQLLYS-PIENIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHHTS--HH-HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcC--HH-HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 11134688999999998 8899999999999998753 11 111111 236778888999999999999999999876
Q ss_pred hhh
Q 001249 533 SSQ 535 (1114)
Q Consensus 533 ~~~ 535 (1114)
..+
T Consensus 528 ~~~ 530 (644)
T 2z6h_A 528 DKP 530 (644)
T ss_dssp TSC
T ss_pred cCc
Confidence 554
No 48
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.51 E-value=3e-12 Score=151.35 Aligned_cols=461 Identities=13% Similarity=0.074 Sum_probs=287.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCc--------hHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcc
Q 001249 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDP--------DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLW 93 (1114)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p--------~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w 93 (1114)
..+..++.-+.++|..+|..|-..|..+....+ ...++.|+..|.++.++.+|..|+..|+++...
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~------ 90 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH------ 90 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS------
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC------
Confidence 356666666778899999999999887754211 134678888887777899999999999996432
Q ss_pred cCCCHHHHHH-----HHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC-C--chhhHHHHHHhhcCCChhhHHHHHH
Q 001249 94 PRLSLHTQSS-----LKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN-G--WPELLPFMFQCVSSDSVKLQESAFL 165 (1114)
Q Consensus 94 ~~l~~~~~~~-----i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~-~--w~~ll~~l~~~~~~~~~~~r~~al~ 165 (1114)
++.+.. ....|++.|.+ +++.++..++.++..++...-... . -...+|.+.+.+.++++..+..+..
T Consensus 91 ----~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~ 165 (529)
T 1jdh_A 91 ----REGLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 165 (529)
T ss_dssp ----HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred ----chhHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHH
Confidence 222322 33467777776 678999999999999987521111 1 2567899999999999999999988
Q ss_pred HHHHhhhhhhhhhhhh-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCC
Q 001249 166 IFAQLSQYIGDTLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGN 244 (1114)
Q Consensus 166 ~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~ 244 (1114)
+|..++...++.-... -...++.+...+.+......+..+..++..+...- .....+.. ...++.+...+.+++
T Consensus 166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~--~g~~~~L~~ll~~~~ 240 (529)
T 1jdh_A 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVE--AGGMQALGLHLTDPS 240 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST---THHHHHHH--TTHHHHHHTTTTSSC
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc---ccHHHHHH--CCCHHHHHHHHhCCC
Confidence 9988875322211100 11345666666666535566777788877776421 11221211 134455555566778
Q ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhH-HHHH
Q 001249 245 EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI-NRLF 323 (1114)
Q Consensus 245 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~ 323 (1114)
+.++..++.++..++...+.. .....+++.+++.+. +.+.++|..|+..+..++.. .+.... .+. ...+
T Consensus 241 ~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~---~~~~~~---~~~~~~~v 310 (529)
T 1jdh_A 241 QRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCN---NYKNKM---MVCQVGGI 310 (529)
T ss_dssp HHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTT---CHHHHH---HHHHTTHH
T ss_pred hHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhcC---CHHHHH---HHHHcCCh
Confidence 899999999999998754321 123456677777764 35788999999999998773 111111 111 1245
Q ss_pred HHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCC-----cch-HHHHHHHHHhhCCCC-hhHHHH
Q 001249 324 AILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN-----TIV-PVASEQLPAYLAAPE-WQKHHA 396 (1114)
Q Consensus 324 ~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~-----~~~-~~l~~~l~~~l~~~~-~~~r~a 396 (1114)
+.++..+....+. ......+..+|..++...+.. .+. ...++.+...+.+++ |..|..
T Consensus 311 ~~L~~ll~~~~~~---------------~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~ 375 (529)
T 1jdh_A 311 EALVRTVLRAGDR---------------EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375 (529)
T ss_dssp HHHHHHHHHHTTC---------------HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred HHHHHHHHccCCH---------------HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHH
Confidence 6666665432110 112334555555554321110 010 123455666777665 899999
Q ss_pred HHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHH----------------------hHhhhchhH
Q 001249 397 ALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQ----------------------LSTDLGPDL 453 (1114)
Q Consensus 397 al~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~----------------------l~~~~~~~~ 453 (1114)
++.+++.++.+.... .... ..+++.++..+.+.++.+|..|+|+++. ++.. +..
T Consensus 376 a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~--~~~ 452 (529)
T 1jdh_A 376 TVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD--VHN 452 (529)
T ss_dssp HHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTS--HHH
T ss_pred HHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC--chH
Confidence 999999998754321 1222 2467888888888888888877776665 2221 110
Q ss_pred Hh-hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001249 454 QN-QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1114)
Q Consensus 454 ~~-~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l--~~il~~L~~~l~~~~~~v~~~al~~l~~l 530 (1114)
.. -.-...++.++..+.+ +++.++..++.+|.++... ++ ....+ ...++.|..+++++++.++..+..++..+
T Consensus 453 ~~~l~~~~~v~~l~~ll~~-~~~~v~~~a~~~l~~l~~~--~~-~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 453 RIVIRGLNTIPLFVQLLYS-PIENIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTS--HH-HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHhccCCccHHHHHHcC-CchHHHHHHHHHHHHHhcC--HH-HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 00 0123577899999999 8899999999999998743 11 11111 13367888889999999999999998765
No 49
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.49 E-value=2.5e-11 Score=143.35 Aligned_cols=472 Identities=13% Similarity=0.067 Sum_probs=284.0
Q ss_pred HHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC---CchhhHHHHHHhhcC-CChhhHHHHHHHHHHhhhhhhhhh
Q 001249 103 SLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTL 178 (1114)
Q Consensus 103 ~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~---~w~~ll~~l~~~~~~-~~~~~r~~al~~l~~l~~~~~~~~ 178 (1114)
.....|.+.|.+ .++.+|..++.+++.++....... .-+..++.+.+.+.+ +++..|..+..+|..+........
T Consensus 17 ~~i~~Lv~lL~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~ 95 (529)
T 1jdh_A 17 RAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 95 (529)
T ss_dssp CHHHHHHHHHTC-SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hhHHHHHHHhCC-CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence 345567777776 589999999999999986432110 124678888888864 488899999999999876522110
Q ss_pred hhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001249 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1114)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l 258 (1114)
.-.-...++.+...+.++ ++.++..|+.++.++....+. ....+. -...++.+...+.++++.++..++.++..+
T Consensus 96 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~--~~~~i~--~~g~i~~L~~ll~~~~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEG--AKMAVR--LAGGLQKMVALLNKTNVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTT--HHHHHH--HHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcc--hHHHHH--HcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 001125788889999997 899999999999999876422 112121 013444555556677888888888888888
Q ss_pred HccchHHHHHHHH-HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhH-HHHHHHHHHhhcCCCCC
Q 001249 259 AGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI-NRLFAILMSMLLDIEDD 336 (1114)
Q Consensus 259 ~~~~~~~~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~ 336 (1114)
+...+..-..... ..++.++.++... ..+..+..+..++..++.. +... ...+ ...++.++..+...+
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~----~~~~---~~~~~~g~~~~L~~ll~~~~-- 240 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVC----SSNK---PAIVEAGGMQALGLHLTDPS-- 240 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTS----TTHH---HHHHHTTHHHHHHTTTTSSC--
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhC-ChHHHHHHHHHHHHHHhcC----cccH---HHHHHCCCHHHHHHHHhCCC--
Confidence 7643322111111 3455555555433 3455666777777777652 2111 1111 235666666554321
Q ss_pred cccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH
Q 001249 337 PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1114)
Q Consensus 337 ~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1114)
......+..++..++...+.......+++.+.+.+.++++.+|..++.+|+.++.+..+......
T Consensus 241 ---------------~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 305 (529)
T 1jdh_A 241 ---------------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305 (529)
T ss_dssp ---------------HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 11234466677777765443344556778888888999999999999999999886543222222
Q ss_pred H-HHHHHHHhcCCC--CChhHHHHHHHHHHHhHhhhchh--HHhh-hhhhhHHHHHhhccCCCC-hhHHHHHHHHHHHhh
Q 001249 417 E-QVLSMVLNSFRD--PHPRVRWAAINAIGQLSTDLGPD--LQNQ-FHPQVLPALAGAMDDFQN-PRVQAHAASAVLNFS 489 (1114)
Q Consensus 417 ~-~i~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~~~~il~~l~~~l~~~~~-~~v~~~a~~al~~l~ 489 (1114)
. ..++.++..+.+ .++.+|..|+++|+.++...+.. .+.. .....+|.+.+.+.+ ++ +.++..++++|.+++
T Consensus 306 ~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~v~~~a~~~l~nl~ 384 (529)
T 1jdh_A 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP-PSHWPLIKATVGLIRNLA 384 (529)
T ss_dssp HTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTST-TCCHHHHHHHHHHHHHHT
T ss_pred HcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcc-ccchHHHHHHHHHHHHHh
Confidence 1 356666666654 44799999999999997643221 1111 133578999999998 54 689999999999998
Q ss_pred hcCCcccccCch-HHHHHHHHHHhhcCChhHHHHHHHHHHH----------------------HHHhhhh--hhhhhHhh
Q 001249 490 ENCTPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALAS----------------------VADSSQE--HFQKYYDA 544 (1114)
Q Consensus 490 ~~~~~~~l~~~l-~~il~~L~~~l~~~~~~v~~~al~~l~~----------------------l~~~~~~--~~~~~~~~ 544 (1114)
..-. ...... ..+++.|...+.+.+..+|..+.++++. ++..... .+.. ..
T Consensus 385 ~~~~--~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~--~~ 460 (529)
T 1jdh_A 385 LCPA--NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRG--LN 460 (529)
T ss_dssp TSGG--GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHH--TT
T ss_pred cChh--hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhc--cC
Confidence 6422 111111 2467888888887777777665554443 3221110 0111 23
Q ss_pred hhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcCCCCCCCchhhHHHHHHHHH
Q 001249 545 VMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA--KQVMEVLMSLQGSQMETDDPTTSYMLQAWARL 620 (1114)
Q Consensus 545 i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 620 (1114)
.++.|...+... ...++..+..+++.++.. ......+ ...++.+..+.++ .+..++..+..++.++
T Consensus 461 ~v~~l~~ll~~~----~~~v~~~a~~~l~~l~~~---~~~~~~i~~~~~~~~L~~l~~~---~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 461 TIPLFVQLLYSP----IENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHS---RNEGVATYAAAVLFRM 528 (529)
T ss_dssp CHHHHHHGGGCS----CHHHHHHHHHHHHHHTTS---HHHHHHHHHTTCHHHHHHGGGC---SSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHcCC----chHHHHHHHHHHHHHhcC---HHHHHHHHHcCChHHHHHHhcC---CCHHHHHHHHHHHHhc
Confidence 566777766432 245677777777766521 1111111 1123445554442 3455777777777655
No 50
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.46 E-value=4.1e-10 Score=132.93 Aligned_cols=441 Identities=13% Similarity=0.127 Sum_probs=276.8
Q ss_pred cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHH
Q 001249 67 RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLP 146 (1114)
Q Consensus 67 ~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~ 146 (1114)
++.+...|+++-..+......+ ++....+.+.+.+.+.+ +++.+|-.+..+++.+... .-.+.++|
T Consensus 84 ~s~~~~~Krl~YL~l~~~~~~~---------~e~~~L~iN~l~kDl~~-~n~~ir~lALr~L~~i~~~----e~~~~l~~ 149 (621)
T 2vgl_A 84 SSNRYTEKQIGYLFISVLVNSN---------SELIRLINNAIKNDLAS-RNPTFMGLALHCIANVGSR----EMAEAFAG 149 (621)
T ss_dssp GCSCHHHHHHHHHHHHHSCCCC---------HHHHHHHHHHHHHHHHS-CCHHHHHHHHHHHHHHCCH----HHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHccCC---------cHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhhccCCH----HHHHHHHH
Confidence 3678899999999999877553 56566667777888886 7999999988888887442 24477889
Q ss_pred HHHHhh--cCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhH
Q 001249 147 FMFQCV--SSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDR 224 (1114)
Q Consensus 147 ~l~~~~--~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 224 (1114)
.+.+++ .+.++.+|..|+.++..+.+..++.+.. +.+++.+.+.|.|. ++.|+.+|+.++..+...- ++.
T Consensus 150 ~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~-----~~~ 221 (621)
T 2vgl_A 150 EIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQ-HLGVVTAATSLITTLAQKN-----PEE 221 (621)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHC-----HHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhC-----hHH
Confidence 999999 8899999999999999999876665431 35566777788886 9999999999999988752 345
Q ss_pred HHhhHHHHHHHHHHHHhCC-------------CHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCC------
Q 001249 225 FQDLLPLMMRTLTESLNNG-------------NEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES------ 285 (1114)
Q Consensus 225 ~~~l~p~ll~~l~~~~~~~-------------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~------ 285 (1114)
+..++|.+++.+.+.+..+ ++-.+...++++..++..........+.+++..++..+.+..
T Consensus 222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccccc
Confidence 6778888888887766432 456667777777766643323444444445554443322110
Q ss_pred -c--chhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHH
Q 001249 286 -L--EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECL 362 (1114)
Q Consensus 286 -~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l 362 (1114)
. ...+...|..++..+. ..+.++...+..+...+... +...+.++...+
T Consensus 302 ~~n~~~aVl~ea~~~i~~l~-----------~~~~~~~~~~~~L~~~L~~~-----------------~~niry~aL~~l 353 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHHD-----------SEPNLLVRACNQLGQFLQHR-----------------ETNLRYLALESM 353 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHSSCS-----------------CHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHhcCC-----------------CcchHHHHHHHH
Confidence 0 1133333443333321 12345566666666655321 112344555666
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHH
Q 001249 363 DRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINA 441 (1114)
Q Consensus 363 ~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~ 441 (1114)
..++...+....+......+...+. +++..+|..++..+..++.. ..+..++..+..++.+.+...|..+..+
T Consensus 354 ~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~------~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~ 427 (621)
T 2vgl_A 354 CTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR------SNAQQIVAEMLSYLETADYSIREEIVLK 427 (621)
T ss_dssp HHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh------hhHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6665433211222333344445566 88899999999998888754 3566777777777777888889888888
Q ss_pred HHHhHhhhchhHHhhhhhhhH---------------------------------HHHHhhccCCCC--hhHHHHHHHHHH
Q 001249 442 IGQLSTDLGPDLQNQFHPQVL---------------------------------PALAGAMDDFQN--PRVQAHAASAVL 486 (1114)
Q Consensus 442 l~~l~~~~~~~~~~~~~~~il---------------------------------~~l~~~l~~~~~--~~v~~~a~~al~ 486 (1114)
++.++..+.+.. ..+++.++ ..++..+.+ +. ..+-..++|.++
T Consensus 428 I~~la~k~~~~~-~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~-~~~~~~li~~~~wilG 505 (621)
T 2vgl_A 428 VAILAEKYAVDY-TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQA-PACHENLVKVGGYILG 505 (621)
T ss_dssp HHHHHHHHCSST-HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcH-HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcC-ccchHHHHHHHHHHhc
Confidence 988887665433 22222222 222333333 21 122234446666
Q ss_pred HhhhcCCcccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccC--ccch
Q 001249 487 NFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATD--KSNR 562 (1114)
Q Consensus 487 ~l~~~~~~~~l~~~l--~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~--~~~~ 562 (1114)
.+.+..... ++. ..++..+...+...+..+|..++.++..+....++ +.+.+..++..... +.+.
T Consensus 506 Ey~~~~~~~---~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--------~~~~i~~~l~~~~~~~~~d~ 574 (621)
T 2vgl_A 506 EFGNLIAGD---PRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--------VKATIQDVLRSDSQLKNADV 574 (621)
T ss_dssp HHTHHHHSS---TTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHSSHHHHSCSSH
T ss_pred chHHHhccc---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--------HHHHHHHHHHHHhcCCCCCH
Confidence 665433211 111 24556666666777899999999998887654432 23344444443332 4456
Q ss_pred hhhHHHHHHHHHHH
Q 001249 563 MLRAKSMECISLVG 576 (1114)
Q Consensus 563 ~lr~~a~~~l~~i~ 576 (1114)
++|.||.+.+..+.
T Consensus 575 evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 575 ELQQRAVEYLRLST 588 (621)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 78999888776653
No 51
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.46 E-value=3e-11 Score=140.39 Aligned_cols=360 Identities=13% Similarity=0.125 Sum_probs=238.6
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHH--HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchH
Q 001249 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1114)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 264 (1114)
+-+++.++++ +.+.+..|+..+..+++.-.++ ..+.+ .+.+|.+++.|. .++++.++..|.++|..++...++
T Consensus 60 ~~~v~~l~s~-d~~~q~~a~~~~rklls~e~~p-pi~~ii~~G~ip~LV~lL~---~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 60 EDIVKGINSN-NLESQLQATQAARKLLSREKQP-PIDNIIRAGLIPKFVSFLG---KTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHTSS-CHHHHHHHHHHHHHHHTCSSCC-CHHHHHHTTHHHHHHHHTT---CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCc-hHHHHHHCCCHHHHHHHHC---CCCCHHHHHHHHHHHHHHhcCCHH
Confidence 4456677886 9999999999999988643222 11222 134555555432 244678899999999999876655
Q ss_pred HHHHHHH-HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCccccc
Q 001249 265 FLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHS 341 (1114)
Q Consensus 265 ~~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~ 341 (1114)
.-...+. ..++.++..+.. .+.++|..|+.++..++.. .+.. + ..+ ...++.++..+...+...
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s--~~~~v~e~A~~aL~nLa~d---~~~~-r---~~v~~~G~i~~Ll~lL~~~~~~~---- 201 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLAS--PHAHISEQAVWALGNIAGD---GSAF-R---DLVIKHGAIDPLLALLAVPDLST---- 201 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTT---CHHH-H---HHHHHTTCHHHHHHHTCSSCGGG----
T ss_pred HHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHhC---CHHH-H---HHHHHcCChHHHHHHHHhccchh----
Confidence 4443333 467778887754 4789999999999999873 2211 1 111 234666666665432100
Q ss_pred CCCCCccccCCCchhhHHHHHHHHHHHcCCC---cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH-H
Q 001249 342 AETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-E 417 (1114)
Q Consensus 342 ~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~ 417 (1114)
........+..++..++..-.+. .....++|.+...+.+++..++..++.+|+.++.+..+...... .
T Consensus 202 --------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~ 273 (510)
T 3ul1_B 202 --------LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK 273 (510)
T ss_dssp --------SCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred --------hhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhc
Confidence 00011223444555555432211 12345778888899999999999999999999987665332222 2
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc
Q 001249 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1114)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1114)
.+++.++..+.++++.++..++++++.++.........-.-...++.+...+.+ +++.+|..|+++|.+++...... .
T Consensus 274 g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~-~ 351 (510)
T 3ul1_B 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQ-I 351 (510)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHH-H
T ss_pred ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHH-H
Confidence 467888889999999999999999999986433222111234567777888888 88999999999999998654321 1
Q ss_pred cC-chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHHH
Q 001249 498 TP-YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISL 574 (1114)
Q Consensus 498 ~~-~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~ 574 (1114)
.. .-..+++.|+..+.+.+..+|..|..+|+.++.........|+ ..+++.|..++... +..++..+++++..
T Consensus 352 ~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~----d~~i~~~~L~aL~n 427 (510)
T 3ul1_B 352 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK----DTKIIQVILDAISN 427 (510)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS----CHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC----CHHHHHHHHHHHHH
Confidence 11 1125788999999999999999999999999876544333333 35778888877542 23467778888887
Q ss_pred HHHH
Q 001249 575 VGMA 578 (1114)
Q Consensus 575 i~~~ 578 (1114)
+...
T Consensus 428 il~~ 431 (510)
T 3ul1_B 428 IFQA 431 (510)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 52
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=2.4e-12 Score=133.60 Aligned_cols=192 Identities=17% Similarity=0.178 Sum_probs=161.5
Q ss_pred CCchhhHHHHHHHHHHHcCC--CcchHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC
Q 001249 352 SSNYSVGQECLDRLAIALGG--NTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR 428 (1114)
Q Consensus 352 ~~~~~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~ 428 (1114)
|..+..|...|..+....+. ...+..+++.+...+. +++..+|.+|+.+++.++.+.+..+.++...++|.++..+.
T Consensus 29 w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~ 108 (242)
T 2qk2_A 29 WTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFK 108 (242)
T ss_dssp HHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc
Confidence 34456677788887766331 1234567888888885 99999999999999999998887788999999999999999
Q ss_pred CCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc-cccCchHHHHHH
Q 001249 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-ILTPYLDGIVSK 507 (1114)
Q Consensus 429 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~-~l~~~l~~il~~ 507 (1114)
|+++.||.++..++..++...+ ++.++|.+...+++ +++.+|..++..|..++...+++ ...+|++.+++.
T Consensus 109 d~~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~ 180 (242)
T 2qk2_A 109 EKKPNVVTALREAIDAIYASTS-------LEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTS 180 (242)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Confidence 9999999999999999987542 46789999999998 89999999999999988877544 456899999999
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhhhhh-hhhhHhhhhHHHHH
Q 001249 508 LLVLLQNGKQMVQEGALTALASVADSSQEH-FQKYYDAVMPFLKA 551 (1114)
Q Consensus 508 L~~~l~~~~~~v~~~al~~l~~l~~~~~~~-~~~~~~~i~~~L~~ 551 (1114)
+..+++++++.+|..|..+++.++..+|.. +.+|++.+-+.-..
T Consensus 181 l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~ 225 (242)
T 2qk2_A 181 LVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMA 225 (242)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHH
Confidence 999999999999999999999999999875 77888766444333
No 53
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.45 E-value=3.4e-10 Score=133.64 Aligned_cols=446 Identities=12% Similarity=0.092 Sum_probs=273.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc---CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~---~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
..+..+++.+.|+|...|+-+.-.+..+.+.+|+.. ...++.+.. ++++.+|-+|...|.++.. +
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~-~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-----------~ 141 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI-RLINNAIKNDLASRNPTFMGLALHCIANVGS-----------R 141 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-----------H
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-----------H
Confidence 356777888889999999999999999887678753 444555543 7899999999999998642 5
Q ss_pred HHHHHHHHHHHHHH--hhchhhhHHHHHHHHHHHHHhcccCCCCch--hhHHHHHHhhcCCChhhHHHHHHHHHHhhhhh
Q 001249 99 HTQSSLKSMLLQSI--QLESAKSISKKLCDTVSELASNILPENGWP--ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI 174 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l--~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~--~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~ 174 (1114)
+..+.+...+.+.+ .+ +++.||++++.++..+.+.. | +.-+ ++++.+.+++.++++.++..|+.++..++...
T Consensus 142 e~~~~l~~~v~~~l~~~d-~~~~VRK~A~~al~kl~~~~-p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 142 EMAEAFAGEIPKILVAGD-TMDSVKQSAALCLLRLYRTS-P-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp HHHHHHTTHHHHHHHCSS-SCHHHHHHHHHHHHHHHHHC-G-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhC-h-hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 66677777888888 54 79999999999999999853 3 2223 67888888888999999999999999998876
Q ss_pred hhhhhhhHHHHHHHHHHhhcC-------------------------------CCChHHHHHHHHHHHHHHHhcCC-c---
Q 001249 175 GDTLTPHLKHLHAVFLNCLTN-------------------------------SNNPDVKIAALNAVINFIQCLTS-S--- 219 (1114)
Q Consensus 175 ~~~~~~~~~~l~~~l~~~l~~-------------------------------~~~~~vr~~a~~~l~~l~~~~~~-~--- 219 (1114)
+..+.+.++.++..+.+.+.. ..++..+..-...+..++....+ +
T Consensus 219 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~ 298 (621)
T 2vgl_A 219 PEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSK 298 (621)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCS
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccc
Confidence 554444444444433333211 01233333333333333321100 0
Q ss_pred --chH-----------------hHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHH
Q 001249 220 --ADR-----------------DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP--RFLRRQLVDVVGSML 278 (1114)
Q Consensus 220 --~~~-----------------~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l~~~ll 278 (1114)
... .....++....+.+...+.+.+++++..++..+..++...+ ..+.+|...++.
T Consensus 299 ~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~--- 375 (621)
T 2vgl_A 299 KVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVIN--- 375 (621)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHH---
T ss_pred cccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHH---
Confidence 000 00112333455556666666788888888888888887765 556666555544
Q ss_pred HHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhH
Q 001249 279 QIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVG 358 (1114)
Q Consensus 279 ~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a 358 (1114)
.+. .+.+..+|..+++.+..++.. .-+..++..+...+.+.+. .....+
T Consensus 376 -~L~-~d~d~~Ir~~aL~lL~~l~~~------------~Nv~~Iv~eL~~yl~~~d~-----------------~~~~~~ 424 (621)
T 2vgl_A 376 -ALK-TERDVSVRQRAVDLLYAMCDR------------SNAQQIVAEMLSYLETADY-----------------SIREEI 424 (621)
T ss_dssp -HHT-TCCCHHHHHHHHHHHHHHCCH------------HHHHHHHHHHHHHHHHCCH-----------------HHHHHH
T ss_pred -Hhc-cCCCHhHHHHHHHHHHHHcCh------------hhHHHHHHHHHHHHHhcCH-----------------HHHHHH
Confidence 332 134678999999998888752 2345666666666654311 122334
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCC--hhHHH
Q 001249 359 QECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPH--PRVRW 436 (1114)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~--~~vr~ 436 (1114)
...+..++..++++ ....+..+.+.+....-.+...+...+..++...++ .-...+..++..+.++. ..+-.
T Consensus 425 v~~I~~la~k~~~~--~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~----~~~~~~~~l~~~l~~~~~~~~li~ 498 (621)
T 2vgl_A 425 VLKVAILAEKYAVD--YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD----VQGYAAKTVFEALQAPACHENLVK 498 (621)
T ss_dssp HHHHHHHHHHHCSS--THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS----CHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred HHHHHHHHHhcCCc--HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChh----HHHHHHHHHHHHHcCccchHHHHH
Confidence 55666777666532 233333333333321111222333344444433221 11123444555566654 34566
Q ss_pred HHHHHHHHhHhhhchhHHhhhh--hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhh-
Q 001249 437 AAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ- 513 (1114)
Q Consensus 437 ~a~~~l~~l~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~- 513 (1114)
.++|.+|.++..+... ++. ..++..+.+.+.. .++.||..+..++..+....+ + + .+.+...|..+..
T Consensus 499 ~~~wilGEy~~~~~~~---~~~~p~~~l~~l~~~~~~-~~~~v~~~~Lta~~Kl~~~~p-~-~---~~~i~~~l~~~~~~ 569 (621)
T 2vgl_A 499 VGGYILGEFGNLIAGD---PRSSPLIQFNLLHSKFHL-CSVPTRALLLSTYIKFVNLFP-E-V---KATIQDVLRSDSQL 569 (621)
T ss_dssp HHHHHHHHHTHHHHSS---TTSCHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCG-G-G---HHHHHHHHSSHHHH
T ss_pred HHHHHhcchHHHhccc---CCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHCh-H-H---HHHHHHHHHHHhcC
Confidence 7889999998766431 111 2456667777776 788999999999999876543 2 1 2222233323444
Q ss_pred -cCChhHHHHHHHHHHHHH
Q 001249 514 -NGKQMVQEGALTALASVA 531 (1114)
Q Consensus 514 -~~~~~v~~~al~~l~~l~ 531 (1114)
+.+.++|..|...+.-+.
T Consensus 570 ~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 570 KNADVELQQRAVEYLRLST 588 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 788999999988776653
No 54
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.45 E-value=4.2e-11 Score=140.06 Aligned_cols=361 Identities=13% Similarity=0.122 Sum_probs=240.4
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHH--HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch
Q 001249 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1114)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 263 (1114)
++-+.+.+.++ ++..+..|+..+..++..-..+ ..+.+ .+.+|.+++.+. .+.++..+..++++|..++...+
T Consensus 78 l~~lv~~l~s~-d~~~q~~a~~~~rklLs~~~~~-~i~~ii~~G~ip~Lv~lL~---~~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 78 VEDIVKGINSN-NLESQLQATQAARKLLSREKQP-PIDNIIRAGLIPKFVSFLG---KTDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHHHHHTSSSCC-CHHHHHHTTHHHHHHHHHT---CTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCCc-hHHHHHHCCCHHHHHHHHc---CCCCHHHHHHHHHHHHHHHcCCH
Confidence 34556677886 8999999999999887643222 11212 245565555443 24568899999999999987665
Q ss_pred HHHHHHHH-HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhcCCCCCcccc
Q 001249 264 RFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWH 340 (1114)
Q Consensus 264 ~~~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~ 340 (1114)
......+. ..++.++..+.. .+.+++..|+.+|..++.. .+. ....+ ...++.++..+.......
T Consensus 153 ~~~~~vv~~Gaip~Lv~LL~s--~~~~v~e~A~~aL~nLa~~---~~~----~r~~i~~~g~i~~Ll~lL~~~~~~~--- 220 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFISLLAS--PHAHISEQAVWALGNIAGA---GSA----FRDLVIKHGAIDPLLALLAVPDLST--- 220 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTT---CHH----HHHHHHHTTCHHHHHHTTCSSCGGG---
T ss_pred HHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcc---CHH----HHHHHHHcCCcHHHHHHHhccchhH---
Confidence 54433333 567777777754 4788999999999999863 221 11111 225666777665432110
Q ss_pred cCCCCCccccCCCchhhHHHHHHHHHHHcCCC---cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH-
Q 001249 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL- 416 (1114)
Q Consensus 341 ~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l- 416 (1114)
........+..++..++..-.+. .....++|.+...+.+++..++..++.+|+.++.+..+......
T Consensus 221 ---------~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~ 291 (529)
T 3tpo_A 221 ---------LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK 291 (529)
T ss_dssp ---------SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT
T ss_pred ---------hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Confidence 00011123444555555332211 12355778888899999999999999999999987765333222
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCccc
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 496 (1114)
..+++.++..+.++++.++..++.+|+.++.........-.-...++.+...+.+ +++.+|..|+++|.+++......
T Consensus 292 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~- 369 (529)
T 3tpo_A 292 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQ- 369 (529)
T ss_dssp TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHH-
T ss_pred ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHH-
Confidence 2467888889999999999999999999986433222112235678888888988 89999999999999998754321
Q ss_pred ccCc-hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHH
Q 001249 497 LTPY-LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECIS 573 (1114)
Q Consensus 497 l~~~-l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~ 573 (1114)
.... -..+++.|+.++.+.+..+|..|+.+|+.++.........++ ..+++.|..++... +..++..+++++.
T Consensus 370 ~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~----d~~i~~~~L~aL~ 445 (529)
T 3tpo_A 370 IQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK----DTKIIQVILDAIS 445 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS----CHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC----CHHHHHHHHHHHH
Confidence 1111 124788899999999999999999999999876443333333 34788888887542 2346667788887
Q ss_pred HHHHH
Q 001249 574 LVGMA 578 (1114)
Q Consensus 574 ~i~~~ 578 (1114)
.+...
T Consensus 446 nil~~ 450 (529)
T 3tpo_A 446 NIFQA 450 (529)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 55
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.8e-12 Score=132.03 Aligned_cols=169 Identities=12% Similarity=0.146 Sum_probs=149.4
Q ss_pred HHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhcH-HHHH-HhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchh
Q 001249 376 PVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCA-KVMV-KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (1114)
Q Consensus 376 ~~l~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~-~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 452 (1114)
..++..+...+ ++.+..+|.+|+.+++.++++.. ..+. +|...++|.++..++|..+.||.++..++..+++.+.+.
T Consensus 59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~ 138 (249)
T 2qk1_A 59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL 138 (249)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccc
Confidence 45677888888 79999999999999999999887 6777 899999999999999999999999999999999988664
Q ss_pred HHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc--ccccCch-HHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 001249 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALAS 529 (1114)
Q Consensus 453 ~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~l~~~l-~~il~~L~~~l~~~~~~v~~~al~~l~~ 529 (1114)
....|++.+++.++..+++ +++.+|..++.+|..++...+. ..+.+|+ +.+++.+.+++.+++..||..|..+++.
T Consensus 139 ~~~~~l~~ll~~l~~~l~~-k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~ 217 (249)
T 2qk1_A 139 ASSGRNEDMLKDILEHMKH-KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAI 217 (249)
T ss_dssp CTTCTTHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3113488999999999998 8999999999999999988764 4567899 9999999999999999999999999999
Q ss_pred HHHhhhhh-hhhhHhhh
Q 001249 530 VADSSQEH-FQKYYDAV 545 (1114)
Q Consensus 530 l~~~~~~~-~~~~~~~i 545 (1114)
++..+|+. +.||++.+
T Consensus 218 i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 218 LIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHHCSGGGHHHHHHS
T ss_pred HHHHhCHHHHHHHHHHH
Confidence 99999874 77877664
No 56
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.25 E-value=2e-06 Score=109.77 Aligned_cols=537 Identities=11% Similarity=0.069 Sum_probs=267.5
Q ss_pred hhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhh----hh-HHHHHHHHH
Q 001249 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT----PH-LKHLHAVFL 190 (1114)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~----~~-~~~l~~~l~ 190 (1114)
.+...|+.+-..+..+-.. | +.|..+...|. -.+.+..+|..|+.+|...+......+. .. -+.++..+.
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~--p-~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~ 99 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEK--C-PICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIA 99 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHH--C-TTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC--c-hHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3667888888888877543 3 46766555553 2456788999999999988865333332 22 223444433
Q ss_pred HhhcCC--CChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch-----
Q 001249 191 NCLTNS--NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP----- 263 (1114)
Q Consensus 191 ~~l~~~--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~----- 263 (1114)
+..... .+..+|.....++..++...- ..-||.++..+.+.+++ ++..+..++.+|..+++...
T Consensus 100 ~~~~~~~~~~~~vr~kla~~la~Ia~~d~--------p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~ 170 (1204)
T 3a6p_A 100 NGTLNILEEENHIKDALSRIVVEMIKREW--------PQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTL 170 (1204)
T ss_dssp HSSCCTTSSCHHHHHHHHHHHHHHHHHHS--------TTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred hhccccccccHHHHHHHHHHHHHHHHHhC--------cccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccch
Confidence 321110 267899999999999887631 12234445555554544 55667778888877765311
Q ss_pred ---------HHHHHHHHHHHHHHHHHhccC-----------------CcchhHHHHHHHHHHHHHHhhhccchhhhcchh
Q 001249 264 ---------RFLRRQLVDVVGSMLQIAEAE-----------------SLEEGTRHLAIEFVITLAEARERAPGMMRKLPQ 317 (1114)
Q Consensus 264 ---------~~~~~~~~~l~~~ll~~~~~~-----------------~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 317 (1114)
..+..+++.+++.+..++... ..+..++..+++++.++... .| .+
T Consensus 171 ~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W---i~------~~ 241 (1204)
T 3a6p_A 171 PPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW---VS------MS 241 (1204)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT---SC------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc---cC------HH
Confidence 123344445555555444210 00112233333333222221 00 00
Q ss_pred hH----HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhH
Q 001249 318 FI----NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQK 393 (1114)
Q Consensus 318 ~~----~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 393 (1114)
++ ..+++.++.. +. +...
T Consensus 242 ~i~~~~~~ll~~l~~~--------------------------------------------------------l~--~~~l 263 (1204)
T 3a6p_A 242 HITAENCKLLEILCLL--------------------------------------------------------LN--EQEL 263 (1204)
T ss_dssp HHHTTTSHHHHHHHHG--------------------------------------------------------GG--CTTT
T ss_pred HHHhccchHHHHHHHH--------------------------------------------------------cC--CHHH
Confidence 00 0122222222 22 1234
Q ss_pred HHHHHHHHHHHHhhc--HHHHH---Hh-----HHHHHHHHH----hcCCCCChhHHHHHHHHHHHhHhhhchhH------
Q 001249 394 HHAALIALAQIAEGC--AKVMV---KN-----LEQVLSMVL----NSFRDPHPRVRWAAINAIGQLSTDLGPDL------ 453 (1114)
Q Consensus 394 r~aal~~l~~l~~~~--~~~~~---~~-----l~~i~~~l~----~~l~d~~~~vr~~a~~~l~~l~~~~~~~~------ 453 (1114)
|.+|+.+|..++... ++... .. +..++.... ..+.+.+..++...+..+..+++.+..-+
T Consensus 264 r~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~ 343 (1204)
T 3a6p_A 264 QLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDV 343 (1204)
T ss_dssp HHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 444444444444321 11000 01 112222211 01122334445555555544443322111
Q ss_pred -HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC---cccccCchHHHHHHHHHHhhc---CC----------
Q 001249 454 -QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT---PEILTPYLDGIVSKLLVLLQN---GK---------- 516 (1114)
Q Consensus 454 -~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~---~~~l~~~l~~il~~L~~~l~~---~~---------- 516 (1114)
....+..+++.++....+ ++..+...++.....+++... ...+.++++.+++.+...+.. +.
T Consensus 344 ~~~~~l~~~l~~lL~~t~~-~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~ 422 (1204)
T 3a6p_A 344 ETPSNFGKYLESFLAFTTH-PSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYS 422 (1204)
T ss_dssp CCCTTHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHH
T ss_pred cChhHHHHHHHHHHHHHhC-ccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhh
Confidence 124567899999999988 777888888888777776532 223456677777766332211 00
Q ss_pred --------------hhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCc---------------------cc
Q 001249 517 --------------QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDK---------------------SN 561 (1114)
Q Consensus 517 --------------~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~---------------------~~ 561 (1114)
...|......+..++...+... ++.+.+.+...+....+. ..
T Consensus 423 ~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~---l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 499 (1204)
T 3a6p_A 423 RFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTS---FQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPS 499 (1204)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHTCC-----------------CCSCSSSHH
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHH---HHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHH
Confidence 1345555556666665554432 233344444443321000 00
Q ss_pred hhhhHHHHHHHHHHHHHh---c-hhhhh-hhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhh
Q 001249 562 RMLRAKSMECISLVGMAV---G-KDKFR-DDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVM 636 (1114)
Q Consensus 562 ~~lr~~a~~~l~~i~~~~---~-~~~f~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~ 636 (1114)
.......+..+..++..+ . .+... ...+.+++.++.+.. .+..++...+.+++++...+.. -..|++.++
T Consensus 500 ~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~----~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL 574 (1204)
T 3a6p_A 500 FVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDT----KDPLILSCVLTNVSALFPFVTY-RPEFLPQVF 574 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCC----SCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCC----CChHHHHHHHHHHHHHHHHHhc-CchHHHHHH
Confidence 111111122222232222 1 01110 123445554443211 1223677788888888777653 357899999
Q ss_pred HHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Q 001249 637 PPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPT 716 (1114)
Q Consensus 637 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~ 716 (1114)
+.++..+...+..... +. . ..+.-+-+..|+.++..++..++..|.||++++...
T Consensus 575 ~~ll~~l~~~~~~~~~------------~~-----------~--~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~ 629 (1204)
T 3a6p_A 575 SKLFSSVTFETVEESK------------AP-----------R--TRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNH 629 (1204)
T ss_dssp HHHHHHHHCCTTCSTT------------SC-----------C--CHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHH
T ss_pred HHHHHhhccCCccccc------------cc-----------c--cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999887532110000 00 0 012334567899999999999999999999999998
Q ss_pred hhhccccc--CCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHcc
Q 001249 717 LVPLLKFY--FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHK 778 (1114)
Q Consensus 717 l~~~l~~~--~~~~vr~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 778 (1114)
+...+..+ ....=+..-..+++.+.... + +.+....++..+++++++.+.+
T Consensus 630 ~~~~l~~~~~l~~~e~~~L~eal~~ia~~~----------~-~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 630 VKQLLSNELLLTQMEKCALMEALVLISNQF----------K-NYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHSTTTSCHHHHHHHHHHHHHHHGGG----------C-CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCcccccHHHHHHHHHHHHHHhccC----------C-CHHHHHHHHHHHHHHHHHHHcc
Confidence 87766532 12222333334443331100 0 2233455567777777777653
No 57
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.18 E-value=2.2e-08 Score=114.33 Aligned_cols=371 Identities=14% Similarity=0.131 Sum_probs=225.5
Q ss_pred CCch-hhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhh-hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhc
Q 001249 139 NGWP-ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1114)
Q Consensus 139 ~~w~-~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (1114)
..|. .-+|.+++.+.+++...+..|...|..++....+.-.. .-...+|.|+..|.++ +..++..|+.+|.++...-
T Consensus 43 ~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 43 PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSS
T ss_pred CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccC
Confidence 4664 46899999999999999999999999888543322111 1224678999999997 9999999999999998531
Q ss_pred CCcchHhHH--HhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHHHH-Hhcc-------
Q 001249 217 TSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP---RFLRRQLVDVVGSMLQ-IAEA------- 283 (1114)
Q Consensus 217 ~~~~~~~~~--~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~ll~-~~~~------- 283 (1114)
+......+ ..-+|.+++.|.. ..+.+++..+..+|..++.... .....-++.++..++. ..+.
T Consensus 122 -~~~nk~~I~~~GaIp~LV~LL~s---~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 122 -DQDNKIAIKNCDGVPALVRLLRK---ARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHH---CCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC------
T ss_pred -CHHHHHHHHHcCCHHHHHHHHcC---CCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccc
Confidence 11122222 2346666665542 2567788888888888876432 1222233344433221 0010
Q ss_pred ----CCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHH
Q 001249 284 ----ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQ 359 (1114)
Q Consensus 284 ----~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~ 359 (1114)
...+.+++..|..+|..++...+..-..++.....++.++..+-..+.....+. ....-+.
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~---------------~~~enav 262 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDS---------------KLVENCV 262 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSC---------------HHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccH---------------HHHHHHH
Confidence 112568999999999999864211111111222223333333322221111100 0011122
Q ss_pred HHHHHHHHHc------------------------CCC--c--chHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHhhcH-
Q 001249 360 ECLDRLAIAL------------------------GGN--T--IVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCA- 409 (1114)
Q Consensus 360 ~~l~~l~~~~------------------------~~~--~--~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~- 409 (1114)
.+|..|+... .++ . +-+.+++.+...+. +.++..+++|..+|..++.+..
T Consensus 263 ~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~ 342 (584)
T 3l6x_A 263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT 342 (584)
T ss_dssp HHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc
Confidence 2222222110 000 1 11233444445553 5689999999999999987532
Q ss_pred --HHHHHhH--HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCC-------ChhHH
Q 001249 410 --KVMVKNL--EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-------NPRVQ 478 (1114)
Q Consensus 410 --~~~~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-------~~~v~ 478 (1114)
..+...+ ...+|.++..|.++++.++..|+++|+.++..... ....-...+|.|++.|.+.. +..++
T Consensus 343 ~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~ 420 (584)
T 3l6x_A 343 YGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN--KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTV 420 (584)
T ss_dssp HHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHH
T ss_pred ccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHhcCCcccccccchHHHH
Confidence 2222233 35689999999999999999999999999975432 23345678999999998721 34678
Q ss_pred HHHHHHHHHhhhcCCcccccC-chHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHH
Q 001249 479 AHAASAVLNFSENCTPEILTP-YLDGIVSKLLVLLQNG--KQMVQEGALTALASVAD 532 (1114)
Q Consensus 479 ~~a~~al~~l~~~~~~~~l~~-~l~~il~~L~~~l~~~--~~~v~~~al~~l~~l~~ 532 (1114)
..||.+|.+++..-... ... .-...++.|..++.+. ...+++.|..++..++.
T Consensus 421 ~~a~~tL~NL~a~~~~~-~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 421 ISILNTINEVIAENLEA-AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 89999999987543211 111 1124678888988875 78899999999998875
No 58
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.17 E-value=2.2e-09 Score=112.53 Aligned_cols=243 Identities=17% Similarity=0.185 Sum_probs=171.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhh
Q 001249 234 RTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM 312 (1114)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 312 (1114)
+.+.+.+.+++++++..++.++..++...+........ ..++.++..+.. .+.++|..++.++..++.. .+..
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~---~~~~- 78 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASG---PDEA- 78 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTS---CHHH-
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcC---ChHH-
Confidence 34445566778999999999999998876644333333 577777887754 3588899999888887762 1100
Q ss_pred hcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChh
Q 001249 313 RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQ 392 (1114)
Q Consensus 313 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~ 392 (1114)
+ ..+ . . .. .++.+...+.++++.
T Consensus 79 ~------~~~-------------------------------------------~-~---~~----~i~~l~~ll~~~~~~ 101 (252)
T 4hxt_A 79 I------KAI-------------------------------------------V-D---AG----GVEVLVKLLTSTDSE 101 (252)
T ss_dssp H------HHH-------------------------------------------H-H---TT----HHHHHHHHTTCSSHH
T ss_pred H------HHH-------------------------------------------H-H---CC----CHHHHHHHHcCCCHH
Confidence 0 000 0 0 11 233344556678899
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccC
Q 001249 393 KHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1114)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~ 471 (1114)
.|..++.+|+.++...++...... ...++.++..+.++++.+|..++++|+.++.........-....+++.+++.+.+
T Consensus 102 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~ 181 (252)
T 4hxt_A 102 VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS 181 (252)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC
Confidence 999999999999976554332222 2478899999999999999999999999987543322122346799999999998
Q ss_pred CCChhHHHHHHHHHHHhhhcCCcccccCc-hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhh
Q 001249 472 FQNPRVQAHAASAVLNFSENCTPEILTPY-LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKY 541 (1114)
Q Consensus 472 ~~~~~v~~~a~~al~~l~~~~~~~~l~~~-l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~ 541 (1114)
+++.++..|+.+|.+++...+ +..... -..+++.|..+++++++.+|+.++.+++.++...+....+|
T Consensus 182 -~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 182 -TDSEVQKEAARALANIASGPT-SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEHHHH 250 (252)
T ss_dssp -SCHHHHHHHHHHHHHHTTSBH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC---
T ss_pred -CCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcccccc
Confidence 889999999999999986432 111111 13468899999999999999999999999998776554444
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.14 E-value=1.1e-08 Score=122.58 Aligned_cols=297 Identities=13% Similarity=0.196 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHH
Q 001249 245 EATAQEALELLIELAGTE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLF 323 (1114)
Q Consensus 245 ~~~~~~~~~~l~~l~~~~-~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 323 (1114)
...+..+...+..+.... .....+ ..++..+.+.+.++. +. +.|+..+..+++.....+ ...+|+-.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~--~~--~~a~~~~~~~~~~~~~~~----~~e~~~~~~~ 97 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKK--TA--ANAMQAVAHIANQSNLSP----SVEPYIVQLV 97 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHH--HH--HHHHHHHHHHTCTTTCCT----TTHHHHHTTH
T ss_pred hhHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccC--CH--HHHHHHHHHHHHhcCCCC----CcccchHHHH
Confidence 444455555555554321 110111 145555555554331 22 788999999987422222 2356776778
Q ss_pred HHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC-ChhHHHHHHHHHH
Q 001249 324 AILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALA 402 (1114)
Q Consensus 324 ~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~~r~aal~~l~ 402 (1114)
|.++....+- ....+.+|..+++.+...+++.. .+.++|.+...+.+. .|..+.+|+.+++
T Consensus 98 ~~~~~~~~dk-----------------~~~v~~aa~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~kw~~k~~~l~~~~ 159 (986)
T 2iw3_A 98 PAICTNAGNK-----------------DKEIQSVASETLISIVNAVNPVA-IKALLPHLTNAIVETNKWQEKIAILAAFS 159 (986)
T ss_dssp HHHHHHTTCS-----------------SHHHHHHHHHHHHHHHHHSCGGG-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-----------------chHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 8887765432 12356788889999999998544 488888888777644 7999999999999
Q ss_pred HHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHH
Q 001249 403 QIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAA 482 (1114)
Q Consensus 403 ~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~ 482 (1114)
.+++..++.+...++.++|.+..++.|..+.|..+|..++..+|..+.+ .-+...+|.|++++.+ |+ .| ..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n----~d~~~~~~~~~~~~~~-p~-~~-~~~~ 232 (986)
T 2iw3_A 160 AMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN----KDIERFIPSLIQCIAD-PT-EV-PETV 232 (986)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC----TTTGGGHHHHHHHHHC-TT-HH-HHHH
T ss_pred HHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC----cchhhhHHHHHHHhcC-hh-hh-HHHH
Confidence 9999999999999999999999999999999999999999999987764 4467889999999998 53 33 2333
Q ss_pred HHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh--hhhhhhHhhhhHHHHHHHhhccCcc
Q 001249 483 SAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--EHFQKYYDAVMPFLKAILVNATDKS 560 (1114)
Q Consensus 483 ~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~--~~~~~~~~~i~~~L~~~l~~~~~~~ 560 (1114)
..|..- .+-.+.-.|-+.-++|.|...|+.....+++.+.-.+..++.-+. ....||++.++|.+........+++
T Consensus 233 ~~l~~~--tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 233 HLLGAT--TFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPE 310 (986)
T ss_dssp HHHTTC--CCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHH
T ss_pred HHhhcC--eeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHH
Confidence 333221 111233357788899999999999999999999999999998775 3677999999999999888777777
Q ss_pred chhhhHHHHHHHHHHHHH
Q 001249 561 NRMLRAKSMECISLVGMA 578 (1114)
Q Consensus 561 ~~~lr~~a~~~l~~i~~~ 578 (1114)
.+.+-.+|++.+-.++..
T Consensus 311 ~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 311 AREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 666666666666655544
No 60
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.13 E-value=2.3e-08 Score=113.96 Aligned_cols=356 Identities=16% Similarity=0.115 Sum_probs=218.8
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhh-hhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHh
Q 001249 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL-TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRD 223 (1114)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 223 (1114)
+|.+.+.+.++++..+..|..+|..++....+.- .-.-...+|.+...|.++ ++.++..|+.+|.++...- .....
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~--~~~k~ 80 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-NQNVQQAAAGALRNLVFRS--TTNKL 80 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSC--HHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCC--HHHHH
Confidence 6788888889999999999999999985432211 111234688899999987 9999999999999998631 11222
Q ss_pred HH--HhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhc--------cCC------c
Q 001249 224 RF--QDLLPLMMRTLTESLN-NGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE--------AES------L 286 (1114)
Q Consensus 224 ~~--~~l~p~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~--------~~~------~ 286 (1114)
.+ .+-+|.+++. +. +++++++..++.+|..++...... ...+...++.++.++. ... .
T Consensus 81 ~i~~~G~i~~Lv~l----L~~~~~~~~~~~a~~aL~nLa~~~~~~-~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 81 ETRRQNGIREAVSL----LRRTGNAEIQKQLTGLLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHTTCHHHHHHH----HTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHcCCHHHHHHH----HhhCCCHHHHHHHHHHHHHHhcCHHhH-HHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 22 2345555554 45 678899999999999998752111 1112255666666652 110 2
Q ss_pred chhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcC----CCCCcccccCCCCCccccCCCchhhHHHHH
Q 001249 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLD----IEDDPLWHSAETEDEDAGESSNYSVGQECL 362 (1114)
Q Consensus 287 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l 362 (1114)
+.++...|..++..++...+.. ..+.... ..+|.|+..+.. ...+.. ....+..++
T Consensus 156 ~~~v~~~a~~aL~nLs~~~~~~-~~i~~~~----g~i~~Lv~lL~~~~~~~~~~~~---------------~~e~a~~~L 215 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSADAGR-QTMRNYS----GLIDSLMAYVQNCVAASRCDDK---------------SVENCMCVL 215 (457)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHH-HHHTTST----THHHHHHHHHHHHHHHTCTTCT---------------THHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHH-HHHHHcC----CCHHHHHHHHHhhccccCCchH---------------HHHHHHHHH
Confidence 4566778999999998731111 0111111 344444444432 100000 000011111
Q ss_pred HHHH-----------------------------------H---------Hc--------CCCc-chHHHHHHHHHhhC-C
Q 001249 363 DRLA-----------------------------------I---------AL--------GGNT-IVPVASEQLPAYLA-A 388 (1114)
Q Consensus 363 ~~l~-----------------------------------~---------~~--------~~~~-~~~~l~~~l~~~l~-~ 388 (1114)
..++ . .. |.+. +-+..++.+...+. +
T Consensus 216 ~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~ 295 (457)
T 1xm9_A 216 HNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS 295 (457)
T ss_dssp HHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHC
T ss_pred HhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhc
Confidence 1110 0 00 0000 11223344444443 4
Q ss_pred CChhHHHHHHHHHHHHHhhcHH---HH-HHhH--HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhH
Q 001249 389 PEWQKHHAALIALAQIAEGCAK---VM-VKNL--EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL 462 (1114)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~---~~-~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il 462 (1114)
.+...+++|+.+|+.++.+... .+ ...+ ...+|.++..|.+++..+|..|+|+|+.++..- ..........+
T Consensus 296 ~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i 373 (457)
T 1xm9_A 296 KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVF 373 (457)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhh
Confidence 5789999999999999876432 22 2223 246799999999999999999999999998743 33223345789
Q ss_pred HHHHhhccCCCC------hhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHH
Q 001249 463 PALAGAMDDFQN------PRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG-KQMVQEGALTALASVA 531 (1114)
Q Consensus 463 ~~l~~~l~~~~~------~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~-~~~v~~~al~~l~~l~ 531 (1114)
|.|++.|.. ++ .++...++.+|.+++...+.....-.-...++.|..++.+. +..+++.|...|..+.
T Consensus 374 ~~Lv~lL~~-~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 374 PEVTRLLTS-HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHTTTS-CCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHhccC-CCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 999999987 43 35778999999998865432110001125688899999988 8999999998887654
No 61
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.11 E-value=3.7e-09 Score=110.70 Aligned_cols=243 Identities=18% Similarity=0.176 Sum_probs=171.3
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh
Q 001249 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1114)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 457 (1114)
++.+.+.+.++++..|..|+.+|+.++...++....... ..++.++..+.++++.+|..++++|+.++.........-.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 455667778888999999999999999877643333333 5789999999999999999999999999865322221122
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001249 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1114)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~ 537 (1114)
-...++.++..+.+ +++.++..|+++|.+++...+...-.-.-...++.|..++.++++.++..++.+++.++...+..
T Consensus 84 ~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 84 DAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 34689999999998 89999999999999998643211000011246889999999999999999999999998754433
Q ss_pred hhhh-HhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhH--HHHHHHHHHHhcCCCCCCCchhhHHH
Q 001249 538 FQKY-YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA--KQVMEVLMSLQGSQMETDDPTTSYML 614 (1114)
Q Consensus 538 ~~~~-~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~ 614 (1114)
.... -...++.|...+.. ....+|..++.+++.++..- ......+ ...++.+..+..+ .+..++..+.
T Consensus 163 ~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~ 233 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANIASGP--TSAIKAIVDAGGVEVLQKLLTS---TDSEVQKEAQ 233 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTSB--HHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHCC---CcHHHHHHHH
Confidence 2222 24578888888753 23468888899998887521 1111111 2355666665542 3446889999
Q ss_pred HHHHHHHHHhccCCccc
Q 001249 615 QAWARLCKCLGQDFLPY 631 (1114)
Q Consensus 615 ~~~~~l~~~~~~~~~~~ 631 (1114)
.++++++...+....+|
T Consensus 234 ~~L~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 234 RALENIKSGGWLEHHHH 250 (252)
T ss_dssp HHHHHHHHTCBCCC---
T ss_pred HHHHHHHcCCCcccccc
Confidence 99999988766655444
No 62
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.07 E-value=7.7e-09 Score=110.03 Aligned_cols=253 Identities=17% Similarity=0.181 Sum_probs=170.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhh
Q 001249 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM 312 (1114)
Q Consensus 233 l~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 312 (1114)
++.+...+.++++.+|..++..|..+.. +..++.+...+. +.+..+|..|+..+..+...
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~--d~~~~vR~~A~~aL~~l~~~-------- 84 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCS--DKNYIRRDIGAFILGQIKIC-------- 84 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHT--CSSHHHHHHHHHHHHHSCCC--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHc--CCCHHHHHHHHHHHHHhccc--------
Confidence 3445556678899999999999988753 234555556664 34678999998887655321
Q ss_pred hcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChh
Q 001249 313 RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQ 392 (1114)
Q Consensus 313 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~ 392 (1114)
...+..+++.+...+.... +...+..+..+|..+....+ ...+.+++.+...+++++|.
T Consensus 85 ---~~~~~~l~~~L~~~~~~d~----------------~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~ 143 (280)
T 1oyz_A 85 ---KKCEDNVFNILNNMALNDK----------------SACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTN 143 (280)
T ss_dssp ---TTTHHHHHHHHHHHHHHCS----------------CHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHH
T ss_pred ---cccchHHHHHHHHHHhcCC----------------CHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHH
Confidence 1123445555543222111 11244566777777764432 34566778888889999999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCC
Q 001249 393 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (1114)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~ 472 (1114)
+|.+++.+++.+.. +..++.+...+.|+++.||..++++|+.+.. ..+.+++.+...+.|
T Consensus 144 vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~~~L~~~l~d- 203 (280)
T 1oyz_A 144 VRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKY---------DNSDIRDCFVEMLQD- 203 (280)
T ss_dssp HHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc---------CcHHHHHHHHHHhcC-
Confidence 99999999997654 2356777788899999999999999988742 124577888889998
Q ss_pred CChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHH
Q 001249 473 QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 552 (1114)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~ 552 (1114)
+++.||..|+.+|+.+. . +..++.|...+++++ +|..++.+++.+.. +..+|.|...
T Consensus 204 ~~~~vR~~A~~aL~~~~---~--------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~ 260 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRK---D--------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTM 260 (280)
T ss_dssp SCHHHHHHHHHHHHHTT---C--------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC---C--------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHH
Confidence 89999999999998874 1 123566666777654 88888888887643 2567778887
Q ss_pred HhhccCccchhhhHHHHHHH
Q 001249 553 LVNATDKSNRMLRAKSMECI 572 (1114)
Q Consensus 553 l~~~~~~~~~~lr~~a~~~l 572 (1114)
+....+ ..++..+++.+
T Consensus 261 l~~~~~---~~~~~~~~~~l 277 (280)
T 1oyz_A 261 LYKFDD---NEIITSAIDKL 277 (280)
T ss_dssp HTTSSC---CHHHHHHHHHH
T ss_pred HhcCCC---cHHHHHHHHHh
Confidence 765332 23444444443
No 63
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.05 E-value=5.2e-08 Score=108.71 Aligned_cols=361 Identities=14% Similarity=0.110 Sum_probs=206.0
Q ss_pred hhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCC-----------ChHHHHHHHHHHHH
Q 001249 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN-----------NPDVKIAALNAVIN 211 (1114)
Q Consensus 143 ~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~-----------~~~vr~~a~~~l~~ 211 (1114)
+.++.+.+.+.+.+... .++.|..+....+--..-.-...+|.|.+.|.... ++++|..|.+++.+
T Consensus 32 ~~~~~l~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~n 108 (458)
T 3nmz_A 32 EMVYSLLSMLGTHDKDD---MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHN 108 (458)
T ss_dssp -------------CCHH---HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHH---HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHH
Confidence 44566666666555542 33444444433221011122446777777777531 37999999999999
Q ss_pred HHHhcCCcchHhHH---HhhH---HHHHHHHHHHHhCCC--HH-----HH-------HHHHHHHHHHHccchHHHHHHHH
Q 001249 212 FIQCLTSSADRDRF---QDLL---PLMMRTLTESLNNGN--EA-----TA-------QEALELLIELAGTEPRFLRRQLV 271 (1114)
Q Consensus 212 l~~~~~~~~~~~~~---~~l~---p~ll~~l~~~~~~~~--~~-----~~-------~~~~~~l~~l~~~~~~~~~~~~~ 271 (1114)
++..-++......- ..++ +.....+.+.+.+.. .+ ++ ..++++|..++.. +..+..+-
T Consensus 109 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~--~e~R~~i~ 186 (458)
T 3nmz_A 109 IIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD--EEHRHAMN 186 (458)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS--HHHHHHHH
T ss_pred HHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC--HHHHHHHH
Confidence 99876543222111 1112 222223334444321 11 22 2778888887543 33333332
Q ss_pred --HHHHHHHHHhc---------cCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhH---HHHHHHHHHhhcCCCCCc
Q 001249 272 --DVVGSMLQIAE---------AESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI---NRLFAILMSMLLDIEDDP 337 (1114)
Q Consensus 272 --~l~~~ll~~~~---------~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~---~~l~~~l~~~l~~~~~~~ 337 (1114)
..++.++.++. ....+..++..|...+..++..+.. ....+ ...+|.|+..|...++
T Consensus 187 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~-------~k~~i~~~~GaIp~LV~LL~s~~~-- 257 (458)
T 3nmz_A 187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA-------NKATLCSMKGCMRALVAQLKSESE-- 257 (458)
T ss_dssp HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH-------HHHHHHHCHHHHHHHHHGGGCSCH--
T ss_pred HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc-------cHHHHHHcCCcHHHHHHHHhCCCH--
Confidence 34455555442 1112456788999999999874211 11122 4568888888763211
Q ss_pred ccccCCCCCccccCCCchhhHHHHHHHHHHHcCC---Ccch-HHHHHHHHHh-hCCCChhHHHHHHHHHHHHHhhcHHHH
Q 001249 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGG---NTIV-PVASEQLPAY-LAAPEWQKHHAALIALAQIAEGCAKVM 412 (1114)
Q Consensus 338 ~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~---~~~~-~~l~~~l~~~-l~~~~~~~r~aal~~l~~l~~~~~~~~ 412 (1114)
.....+..+|..++..-.. ..+. .-.++.+.+. ..+.+...++.++.+|..++.++.+.-
T Consensus 258 ---------------~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk 322 (458)
T 3nmz_A 258 ---------------DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322 (458)
T ss_dssp ---------------HHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ---------------HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 1233455566665431000 0111 1234445554 456788999999999999998664322
Q ss_pred HHhH--HHHHHHHHhcCCCCCh----hHHHHHHHHHHHhHhh--hchhHHhh-hhhhhHHHHHhhccCCCChhHHHHHHH
Q 001249 413 VKNL--EQVLSMVLNSFRDPHP----RVRWAAINAIGQLSTD--LGPDLQNQ-FHPQVLPALAGAMDDFQNPRVQAHAAS 483 (1114)
Q Consensus 413 ~~~l--~~i~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~--~~~~~~~~-~~~~il~~l~~~l~~~~~~~v~~~a~~ 483 (1114)
.... ...++.+...|.+.++ .++..|+++|..++.+ ..+..... .-...+|.|+..|.+ ++..++..|++
T Consensus 323 ~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~-~~~~v~~~A~~ 401 (458)
T 3nmz_A 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACG 401 (458)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC-SCHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC-CChHHHHHHHH
Confidence 2221 3578888888887655 4899999999999863 12221111 234678999999998 88899999999
Q ss_pred HHHHhhhcCCcccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 484 AVLNFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 484 al~~l~~~~~~~~l~~~l--~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
+|.+++.... +. ..++ ...++.|..++++.+..+++.|..+|..++..-+
T Consensus 402 aL~nLa~~~~-~~-~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 402 TLWNLSARNP-KD-QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHSSCH-HH-HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHcCCH-HH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999985322 21 1222 2458899999999999999999999999987543
No 64
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.05 E-value=3.7e-09 Score=107.00 Aligned_cols=193 Identities=20% Similarity=0.284 Sum_probs=144.0
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhh
Q 001249 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1114)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1114)
..+.+..+++++++..|..|+.+|+.++.+..+.....+. ..++.++..|.++++.+|..|+++|+.++.........-
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 4456667788999999999999999999776654333332 578999999999999999999999999985433322112
Q ss_pred hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccC-chHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP-YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~-~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
.-...+|.++..+.+ +++.++..|+++|.+++...... ... .-...++.|+.++++++..++..++.+++.++....
T Consensus 93 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 93 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHCCCHHHHHHHHcC-CcHHHHHHHHHHHHHHHcCCHHH-HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 235689999999999 89999999999999998653321 111 123478999999999999999999999999997644
Q ss_pred hhhhhh-HhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHH
Q 001249 536 EHFQKY-YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1114)
Q Consensus 536 ~~~~~~-~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1114)
...... -...++.|...+.. ....+|..|..+++.++
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSH----ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHHh
Confidence 332222 23567777777653 23467888888887764
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.05 E-value=1.8e-07 Score=112.21 Aligned_cols=305 Identities=11% Similarity=0.189 Sum_probs=216.7
Q ss_pred HHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCC--CCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhh--hhhh
Q 001249 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPE--NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD--TLTP 180 (1114)
Q Consensus 105 ~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~--~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~ 180 (1114)
...+++.+... +..-++.++..++.+....... -.| .++..+...+.+.... ++|+.++..+++..+. .+.+
T Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~ 91 (986)
T 2iw3_A 16 LEELFQKLSVA-TADNRHEIASEVASFLNGNIIEHDVPE-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP 91 (986)
T ss_dssp HHHHHHHHTTC-CTTTHHHHHHHHHHHHTSSCSSSSCCH-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH
T ss_pred HHHHHhhcccc-chhHHHHHHHHHHHHHhccccccccch-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc
Confidence 33466666652 3444555666666665543221 245 6788888887765444 9999999999987643 4667
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001249 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1114)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~ 260 (1114)
++-.+++.++..+.|. ...||.+|-.+...++..++ ......++|.++..+.. ...+..+..++.++..+++
T Consensus 92 ~~~~~~~~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~----~~a~~~~~~~~~~~~~~---~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 92 YIVQLVPAICTNAGNK-DKEIQSVASETLISIVNAVN----PVAIKALLPHLTNAIVE---TNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp HHHTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSC----GGGHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHHH
Confidence 7778899999999997 88999999999999999873 34456667777666632 4479999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccc
Q 001249 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1114)
Q Consensus 261 ~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1114)
..+..+...+++++|.+...+. |...+++.+|...+..+|..-.+ +.+.++ +|.|+.+|..+++
T Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~--d~k~~v~~~~~~~~~~~~~~~~n-----~d~~~~----~~~~~~~~~~p~~----- 227 (986)
T 2iw3_A 164 AAKDQVALRMPELIPVLSETMW--DTKKEVKAAATAAMTKATETVDN-----KDIERF----IPSLIQCIADPTE----- 227 (986)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHGGGCCC-----TTTGGG----HHHHHHHHHCTTH-----
T ss_pred HhHHHHHHhccchhcchHhhcc--cCcHHHHHHHHHHHHHHHhcCCC-----cchhhh----HHHHHHHhcChhh-----
Confidence 8899999999999999998774 56789999999999888874111 233344 4555555544321
Q ss_pred cCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHH
Q 001249 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420 (1114)
Q Consensus 341 ~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 420 (1114)
.-+|+..|+. -.|+. .- -.+.+.-++
T Consensus 228 -----------------~~~~~~~l~~----~tfv~-----------~v----------------------~~~~l~~~~ 253 (986)
T 2iw3_A 228 -----------------VPETVHLLGA----TTFVA-----------EV----------------------TPATLSIMV 253 (986)
T ss_dssp -----------------HHHHHHHHTT----CCCCS-----------CC----------------------CHHHHHHHH
T ss_pred -----------------hHHHHHHhhc----CeeEe-----------ee----------------------cchhHHHHH
Confidence 1234444431 11111 00 014555677
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHhHhhhch-hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhc
Q 001249 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1114)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1114)
|.+.++|++....++..++..+..+|+...+ ....+|++.++|.+-+..+...+|++|+.|-.|+..+...
T Consensus 254 p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 254 PLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888876532 2236899999999998887767899999999888888653
No 66
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.04 E-value=5e-09 Score=109.66 Aligned_cols=232 Identities=19% Similarity=0.219 Sum_probs=162.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH-HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhc
Q 001249 236 LTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRK 314 (1114)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 314 (1114)
+...+++++++++..++.++..+...........+. ..++.++..+... +.++|..|+.++..++.. .+.
T Consensus 17 ~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~---~~~---- 87 (252)
T 4db8_A 17 MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG---GNE---- 87 (252)
T ss_dssp HHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTS---CHH----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhcC---CHH----
Confidence 334455788999999999997665543333222222 5677888887643 578899999888887762 110
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHH
Q 001249 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1114)
Q Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r 394 (1114)
... .+.. .. .++.+...++++++..|
T Consensus 88 ---~~~-------------------------------------------~i~~----~g----~i~~L~~lL~~~~~~v~ 113 (252)
T 4db8_A 88 ---QIQ-------------------------------------------AVID----AG----ALPALVQLLSSPNEQIL 113 (252)
T ss_dssp ---HHH-------------------------------------------HHHH----TT----HHHHHHHGGGCSCHHHH
T ss_pred ---HHH-------------------------------------------HHHH----cC----CHHHHHHHHcCCCHHHH
Confidence 000 0000 11 33445566677889999
Q ss_pred HHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCC
Q 001249 395 HAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ 473 (1114)
Q Consensus 395 ~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~ 473 (1114)
..++.+|+.++.+......... ...++.++..+.++++.+|..|+++|+.++.........-.-..+++.+++.+.+ +
T Consensus 114 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~ 192 (252)
T 4db8_A 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-P 192 (252)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC-S
T ss_pred HHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC-C
Confidence 9999999999887654322222 2488999999999999999999999999997543322112236789999999998 8
Q ss_pred ChhHHHHHHHHHHHhhhcCCcccccCch-HHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001249 474 NPRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1114)
Q Consensus 474 ~~~v~~~a~~al~~l~~~~~~~~l~~~l-~~il~~L~~~l~~~~~~v~~~al~~l~~l~~ 532 (1114)
++.++..|+.+|.+++...+ +...... ...++.|..++++.++.+|+.|+.+++.++.
T Consensus 193 ~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 193 NEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp SHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999985432 1111112 2468889999999999999999999987753
No 67
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.4e-06 Score=101.02 Aligned_cols=424 Identities=12% Similarity=0.129 Sum_probs=248.4
Q ss_pred CCHHHHHHHHHHHHHHHhhc-hhhhHHHHHHHHHHHHHhcccC-CCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhh
Q 001249 96 LSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILP-ENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (1114)
Q Consensus 96 l~~~~~~~i~~~ll~~l~~e-~~~~vr~~~~~~i~~ia~~~~~-~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~ 173 (1114)
++...++.|....+..|..- .+..+|..++-++.++.....+ ...-.++.+.+..++.+++...|+.|+..|.++.-.
T Consensus 285 i~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~ 364 (778)
T 3opb_A 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK 364 (778)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS
T ss_pred CCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 34556666666666655531 2357888888888888764322 234568899999999887777799999999998753
Q ss_pred --hhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcch-HhHHHhhHHHHHHH-HHHHHhCCCHHHHH
Q 001249 174 --IGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD-RDRFQDLLPLMMRT-LTESLNNGNEATAQ 249 (1114)
Q Consensus 174 --~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~l~p~ll~~-l~~~~~~~~~~~~~ 249 (1114)
+.+.+... ..++..+...+.+..+..+-..++.++.++..+.+.... ......+-+ +.+. ....-...++....
T Consensus 365 ~~VKe~L~~d-~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~-~A~~~~p~~~~~d~~~~~~ 442 (778)
T 3opb_A 365 ASVKIMIRSN-ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXX-XXXXXXPAADKVGAEKAAK 442 (778)
T ss_dssp SHHHHHHHHC-HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------------------CCTHHHHH
T ss_pred HHHHHHHHhC-HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhh-hccccCcccCcccccccch
Confidence 23334432 455667777777533678889999999999887543111 111111111 1110 00000000100000
Q ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhH-HHHHHHHHH
Q 001249 250 EALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI-NRLFAILMS 328 (1114)
Q Consensus 250 ~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~ 328 (1114)
..+.-+. ...+.. ..+++.+...+.. .++.+|..+...+..++...+... ..+ ...++.|+.
T Consensus 443 ~~v~~~~------~~~l~e--aGvIp~Lv~Ll~S--~s~~~re~A~~aL~nLS~d~~~R~-------~lvqqGal~~LL~ 505 (778)
T 3opb_A 443 EDILLFN------EKYILR--TELISFLKREMHN--LSPNCKQQVVRIIYNITRSKNFIP-------QLAQQGAVKIILE 505 (778)
T ss_dssp HHHHHHH------HHHTTT--TTHHHHHHHHGGG--SCHHHHHHHHHHHHHHHTSGGGHH-------HHHHTTHHHHHHH
T ss_pred HHHHHHH------HHHHHH--CcCHHHHHHHHcC--CCHHHHHHHHHHHHHHcCCHHHHH-------HHHHCCCHHHHHH
Confidence 0000000 000000 1356666666643 478899999999999987422111 112 235677777
Q ss_pred hhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHc------CCCcchHHHHHHHHHhhC-CCC-----------
Q 001249 329 MLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIAL------GGNTIVPVASEQLPAYLA-APE----------- 390 (1114)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~------~~~~~~~~l~~~l~~~l~-~~~----------- 390 (1114)
.+....+. ....+..|..+|.++.... ++.... ..++.+.+++. ++.
T Consensus 506 lL~s~~~~--------------~~~~k~~AA~ALArLlis~np~~~f~~~~~~-~aI~pLv~LL~~~~~~~~~~l~~~~~ 570 (778)
T 3opb_A 506 YLANKQDI--------------GEPIRILGCRALTRMLIFTNPGLIFKKYSAL-NAIPFLFELLPRSTPVDDNPLHNDEQ 570 (778)
T ss_dssp HTTCC-----------------CCHHHHHHHHHHHHHHHTSCHHHHSSSSCST-THHHHHHHTSCCSSSCSSCC---CCC
T ss_pred HHhcCCCc--------------chHHHHHHHHHHHHHHhcCCHHHHcCCCccc-cchHHHHHHcCCCCCccccccccccc
Confidence 76543211 0113456777888776432 211112 34444445554 121
Q ss_pred --hhHHHHHHHHHHHHHhhcH---HHH-HHhHH--HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh---
Q 001249 391 --WQKHHAALIALAQIAEGCA---KVM-VKNLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP--- 459 (1114)
Q Consensus 391 --~~~r~aal~~l~~l~~~~~---~~~-~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--- 459 (1114)
-..+..|+.+|..++.... +.. ...+. ..++.+...+.+.++.||.+|+++++.++..-. .+...++.
T Consensus 571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~ 649 (778)
T 3opb_A 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL-TIAAKFFNLEN 649 (778)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSS
T ss_pred ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcC
Confidence 1348899999999998752 222 22343 478999999999999999999999999996322 11012321
Q ss_pred -h---hHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc--ccccCchHHHHHHHHHHhhc--CChhHHHHHHHHHHHHH
Q 001249 460 -Q---VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPYLDGIVSKLLVLLQN--GKQMVQEGALTALASVA 531 (1114)
Q Consensus 460 -~---il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~l~~~l~~il~~L~~~l~~--~~~~v~~~al~~l~~l~ 531 (1114)
. =++.++..+.. .+..+|.+|+++|.++....+. ..+. -....++.++..+++ .+..+|..++.++..++
T Consensus 650 ~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~~~~ia~~ll-~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 650 PQSLRNFNILVKLLQL-SDVESQRAVAAIFANIATTIPLIAKELL-TKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCHHHHHHHT-TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred chhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCChHHHHHHH-HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 1 27788888877 8999999999999998654321 1111 113567788888888 88999999999999999
Q ss_pred Hhhh-----hhhhhhH--hhhhHHHHHHHhhc
Q 001249 532 DSSQ-----EHFQKYY--DAVMPFLKAILVNA 556 (1114)
Q Consensus 532 ~~~~-----~~~~~~~--~~i~~~L~~~l~~~ 556 (1114)
.... +.+..+. ..+...|..++...
T Consensus 728 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 728 EVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp TTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred HhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 6332 2233332 23445555555543
No 68
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.01 E-value=8.9e-08 Score=101.75 Aligned_cols=224 Identities=16% Similarity=0.099 Sum_probs=156.8
Q ss_pred HHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCC
Q 001249 274 VGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESS 353 (1114)
Q Consensus 274 ~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~ 353 (1114)
++.++..+. +.+..+|..|+..+..+.. +..++.+...+.+. +..
T Consensus 25 i~~L~~~L~--~~~~~vr~~A~~~L~~~~~----------------~~~~~~L~~~l~d~-----------------~~~ 69 (280)
T 1oyz_A 25 DDELFRLLD--DHNSLKRISSARVLQLRGG----------------QDAVRLAIEFCSDK-----------------NYI 69 (280)
T ss_dssp HHHHHHHTT--CSSHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHTCS-----------------SHH
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHccCC----------------chHHHHHHHHHcCC-----------------CHH
Confidence 344455554 3467899998887775532 23455555555321 111
Q ss_pred chhhHHHHHHHHHHHcCCCcchHHHHHHHH-HhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCCh
Q 001249 354 NYSVGQECLDRLAIALGGNTIVPVASEQLP-AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHP 432 (1114)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~-~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~ 432 (1114)
.+..+..+|..+. ......+.+++.+. ..++++++.+|..++.+|+.+..+.+ .+.+.+++.+...++|+++
T Consensus 70 vR~~A~~aL~~l~---~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~ 142 (280)
T 1oyz_A 70 RRDIGAFILGQIK---ICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKST 142 (280)
T ss_dssp HHHHHHHHHHHSC---CCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHhc---cccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCH
Confidence 2334445554432 22345666777776 35678999999999999999876442 2345678888999999999
Q ss_pred hHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh
Q 001249 433 RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (1114)
Q Consensus 433 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l 512 (1114)
.||..|+++|+.+.. +..++.+...+.+ +++.||..|+.+|..+.. .-+..++.|...+
T Consensus 143 ~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~---------~~~~~~~~L~~~l 201 (280)
T 1oyz_A 143 NVRRATAFAISVIND-----------KATIPLLINLLKD-PNGDVRNWAAFAININKY---------DNSDIRDCFVEML 201 (280)
T ss_dssp HHHHHHHHHHHTC--------------CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCC-----------HHHHHHHHHHHcC-CCHHHHHHHHHHHHhhcc---------CcHHHHHHHHHHh
Confidence 999999999988642 2477888888998 899999999999988631 1245678888999
Q ss_pred hcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHH
Q 001249 513 QNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1114)
Q Consensus 513 ~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1114)
+++++.+|..++.+++.+.. +..++.|...+.+ + .+|..++++++.++
T Consensus 202 ~d~~~~vR~~A~~aL~~~~~----------~~~~~~L~~~l~d---~---~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 202 QDKNEEVRIEAIIGLSYRKD----------KRVLSVLCDELKK---N---TVYDDIIEAAGELG 249 (280)
T ss_dssp TCSCHHHHHHHHHHHHHTTC----------GGGHHHHHHHHTS---S---SCCHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHhCC----------HhhHHHHHHHhcC---c---cHHHHHHHHHHhcC
Confidence 99999999999999988751 2456677777643 1 27888888887764
No 69
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.99 E-value=5.9e-09 Score=109.05 Aligned_cols=233 Identities=18% Similarity=0.241 Sum_probs=159.5
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhh
Q 001249 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1114)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1114)
+.+...++++++..|..|+.+|..+.....+.....+ ...++.++..|.++++.+|..|+++|+.++.........-.-
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4455567788999999999999776655333222222 257899999999999999999999999998643332211123
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhh
Q 001249 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF 538 (1114)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~ 538 (1114)
...+|.++..+.+ +++.++..|+++|.+++.......-.-.-...++.|..++++++..++..++.+++.++.......
T Consensus 95 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 95 AGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp TTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 4689999999999 899999999999999987543210001122478999999999999999999999999987544332
Q ss_pred hhhH-hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhH-HHHHHHHHHHhcCCCCCCCchhhHHHHH
Q 001249 539 QKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA-KQVMEVLMSLQGSQMETDDPTTSYMLQA 616 (1114)
Q Consensus 539 ~~~~-~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 616 (1114)
.... ...+|.|...+... ...++..|+.+++.++..-. +...... ...++.+..+..+ .+..++..+..+
T Consensus 174 ~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~A~~~ 245 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSP----NEQILQEALWALSNIASGGN-EQKQAVKEAGALEKLEQLQSH---ENEKIQKEAQEA 245 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCS----SHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHTTTTC---SSSHHHHTHHHH
T ss_pred HHHHHCCCHHHHHHHHCCC----CHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhCC---CCHHHHHHHHHH
Confidence 2222 46788888877542 34678888889988874211 1111111 1245555554432 344577777777
Q ss_pred HHHHH
Q 001249 617 WARLC 621 (1114)
Q Consensus 617 ~~~l~ 621 (1114)
+++++
T Consensus 246 L~~l~ 250 (252)
T 4db8_A 246 LEKLQ 250 (252)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 76654
No 70
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.98 E-value=3.3e-07 Score=104.65 Aligned_cols=361 Identities=10% Similarity=0.048 Sum_probs=225.7
Q ss_pred HHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCC---chhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhh--
Q 001249 107 MLLQSIQLESAKSISKKLCDTVSELASNILPENG---WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPH-- 181 (1114)
Q Consensus 107 ~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~---w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-- 181 (1114)
.|++.|.+ .+..++..++.++..++....+... -...+|.|++++.+++..+++.|..+|..++....+.-...
T Consensus 52 ~LV~~L~s-~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~ 130 (584)
T 3l6x_A 52 EVIAMLGF-RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIK 130 (584)
T ss_dssp HHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 45666776 5888998899999888863211110 13568999999999999999999999999986311111111
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHH--------------HhCCCHHH
Q 001249 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTES--------------LNNGNEAT 247 (1114)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~--------------~~~~~~~~ 247 (1114)
-...++.++..|.+..+..++..|..+|.++...- .........-+|.+++.+... ....++++
T Consensus 131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~--~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V 208 (584)
T 3l6x_A 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD--SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208 (584)
T ss_dssp HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG--GGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHH
T ss_pred HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHH
Confidence 12467778888876337789999999998887632 112222344566666654211 01235789
Q ss_pred HHHHHHHHHHHHccchH---HHHHHHHHHHHHHHHHh----ccCCcchhHHHHHHHHHHHHHHhhh-ccchhh-------
Q 001249 248 AQEALELLIELAGTEPR---FLRRQLVDVVGSMLQIA----EAESLEEGTRHLAIEFVITLAEARE-RAPGMM------- 312 (1114)
Q Consensus 248 ~~~~~~~l~~l~~~~~~---~~~~~~~~l~~~ll~~~----~~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~------- 312 (1114)
+..+..+|..++...+. .+... ..+++.++.++ ...+.+......|+..+..++...+ ..|...
T Consensus 209 ~~nAa~~L~NLs~~~~~~R~~i~~~-~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~ 287 (584)
T 3l6x_A 209 LTNTAGCLRNVSSERSEARRKLREC-DGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287 (584)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHS-TTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHc-CCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcc
Confidence 99999999999875432 22221 22333333333 2233456777888888877764210 011000
Q ss_pred -----------hcchh-hHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCC-----Ccch
Q 001249 313 -----------RKLPQ-FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG-----NTIV 375 (1114)
Q Consensus 313 -----------~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~-----~~~~ 375 (1114)
+.... +-...++.++..|..... ......|..+|..|+..-+. ...+
T Consensus 288 ~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~----------------~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v 351 (584)
T 3l6x_A 288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKT----------------PAILEASAGAIQNLCAGRWTYGRYIRSAL 351 (584)
T ss_dssp --------CCCCGGGGGGSHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred cccccccccCchhHHHHhcccHHHHHHHHHccCCC----------------HHHHHHHHHHHHHHHcCCccccHHHHHHH
Confidence 00000 113445666666543211 11234566667666531110 0011
Q ss_pred --HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcH--HHHHHhHHHHHHHHHhcCCCC--------ChhHHHHHHHHHH
Q 001249 376 --PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA--KVMVKNLEQVLSMVLNSFRDP--------HPRVRWAAINAIG 443 (1114)
Q Consensus 376 --~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~d~--------~~~vr~~a~~~l~ 443 (1114)
...+|.+..++.+++..++..|+.+|+.++.+.. ..+ -...+|.++..|.+. +..++..|+++|+
T Consensus 352 ~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~ 428 (584)
T 3l6x_A 352 RQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTIN 428 (584)
T ss_dssp TSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHH
Confidence 3457788889999999999999999999998654 222 246788899888876 3577889999999
Q ss_pred HhHhhhchhHHhhhhhhhHHHHHhhccCC-CChhHHHHHHHHHHHhhh
Q 001249 444 QLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSE 490 (1114)
Q Consensus 444 ~l~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~ 490 (1114)
.++..-......-.-...+|.|...+.+. ..+.++..|+.+|.++..
T Consensus 429 NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 429 EVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 98754333322223457889999998872 278899999999999875
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.96 E-value=9.2e-07 Score=98.69 Aligned_cols=384 Identities=15% Similarity=0.098 Sum_probs=197.8
Q ss_pred CCChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchH--------HHHHHHHHHccC-----------CCHHHHHHHH
Q 001249 18 GPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDS--------LTLKLAHLLQRS-----------PHPEARAMAA 78 (1114)
Q Consensus 18 ~~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~--------~~~~L~~il~~~-----------~~~~~R~~A~ 78 (1114)
++..+.+..++..+.+.|.+. .-..|..+.. +|+. .++.|+++|..+ .+++.|.-|+
T Consensus 28 ~~~~~~~~~l~~~~~~~~~~~---~~~~ll~~~~-~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~ 103 (458)
T 3nmz_A 28 GTKVEMVYSLLSMLGTHDKDD---MSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARAS 103 (458)
T ss_dssp -----------------CCHH---HHHHHHHHHS-STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHH
T ss_pred CchHHHHHHHHHHhcCCCHHH---HHHHHHHHHc-CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHH
Confidence 455667778888887777663 3334555655 4543 367888999863 2379999999
Q ss_pred HHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC--CchhhHHHHHHhhcCCC
Q 001249 79 VLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN--GWPELLPFMFQCVSSDS 156 (1114)
Q Consensus 79 ~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~--~w~~ll~~l~~~~~~~~ 156 (1114)
-.|.|++... +++........++..|.. +|...-..+.-+.......+ .-| .+ .+-
T Consensus 104 ~al~ni~~~~--------~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~ 161 (458)
T 3nmz_A 104 AALHNIIHSQ--------PDDKRGRREIRVLHLLEQ-----IRAYCETCWEWQEAHEPGMDQDKNP--MP-------APV 161 (458)
T ss_dssp HHHHHHHHHS--------CSCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTTTSSSSCCCSCC-----------CCC
T ss_pred HHHHHHHccC--------cchhHHHHHHHHHHHHHH-----hhhhhHHHHHHHHhhccccccccCC--cc-------chh
Confidence 9999998764 122222222233333332 11110011111111100000 000 00 000
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhH--HHHHHHHHHhhc----------CCCChHHHHHHHHHHHHHHHhcCCcchHhH
Q 001249 157 VKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLT----------NSNNPDVKIAALNAVINFIQCLTSSADRDR 224 (1114)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~----------~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 224 (1114)
......|+.+|+.+..+ +..+..+ ...++.+...+. +..++.++..|+.+|.++...- ......
T Consensus 162 ~~~~~qAv~aL~nls~~--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~--~~~k~~ 237 (458)
T 3nmz_A 162 EHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD--VANKAT 237 (458)
T ss_dssp TTTTHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC--HHHHHH
T ss_pred hHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC--cccHHH
Confidence 11222566677766543 2112111 123333433332 1124678999999999998542 111111
Q ss_pred HHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH--HHHHHHHHHhccCCcchhHHHHHHHHHHHHH
Q 001249 225 FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLA 302 (1114)
Q Consensus 225 ~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~ 302 (1114)
+.. ....+..|...+.+++++++..++.+|..++.......+..+. ..++.++.++.. ..+..++..|+..+..++
T Consensus 238 i~~-~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~-s~~~~v~~~A~~aL~nLs 315 (458)
T 3nmz_A 238 LCS-MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE-VKKESTLKSVLSALWNLS 315 (458)
T ss_dssp HHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT-CCSHHHHHHHHHHHHHHH
T ss_pred HHH-cCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc-CCCHHHHHHHHHHHHHHc
Confidence 210 1233455555566889999999999999987642122222221 456666665322 235678888888888887
Q ss_pred Hh-hhccchhhhcchhhH--HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHH
Q 001249 303 EA-RERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVAS 379 (1114)
Q Consensus 303 ~~-~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~ 379 (1114)
.. .+..+ .+. ...+|.|...|....+
T Consensus 316 ~~~~~nk~-------~I~~~~Gal~~Lv~LL~~~~~-------------------------------------------- 344 (458)
T 3nmz_A 316 AHCTENKA-------DICAVDGALAFLVGTLTYRSQ-------------------------------------------- 344 (458)
T ss_dssp HHCHHHHH-------HHHHSTTHHHHHHHHTTCCCS--------------------------------------------
T ss_pred cCCHHHHH-------HHHHhcCcHHHHHHHhcCCCC--------------------------------------------
Confidence 62 11111 111 1234444443322110
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHh---hcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHh
Q 001249 380 EQLPAYLAAPEWQKHHAALIALAQIAE---GCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1114)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~---~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1114)
++.+..++.|+.+|..++. +..+...... ...++.++..|.+.+..++..|+++|+.++.........
T Consensus 345 --------~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 416 (458)
T 3nmz_A 345 --------TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 416 (458)
T ss_dssp --------SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred --------cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHH
Confidence 0112355556666666664 3333222222 246888999999999999999999999998533222211
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001249 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1114)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1114)
-.-...+|.|+..+.. ++++++..|+++|.+++.+-+
T Consensus 417 i~~~G~I~~Lv~LL~s-~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 417 LWDMGAVSMLKNLIHS-KHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHTHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCCH
Confidence 1235789999999988 899999999999999998753
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.96 E-value=0.00015 Score=86.11 Aligned_cols=125 Identities=18% Similarity=0.088 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccC
Q 001249 855 EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACND 934 (1114)
Q Consensus 855 ~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~ 934 (1114)
.++.++...+|-+.-..++ ..+.++..+.++.++..|..+.-.+|.+....|. +.++..+.....|
T Consensus 593 ~VRraAViaLGlI~~g~~e--------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D 658 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYT--------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKD 658 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCS--------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhccCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccC
Confidence 3566666666654322221 1233333333566788899888888887533322 3566777777899
Q ss_pred CChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHH
Q 001249 935 ENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKI 997 (1114)
Q Consensus 935 ~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l 997 (1114)
++..||++|+.+||.+.....+...|.+.+++..|...+.++. ++..++-.++-|.|-+
T Consensus 659 ~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~----~d~~~~fga~iAqGll 717 (963)
T 4ady_A 659 PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH----QEGLAKFGACVAQGIM 717 (963)
T ss_dssp SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSS----SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhccc----ccHHHHHHHHHHHHHH
Confidence 9999999999999999988877777888889998888887532 1356777788888855
No 73
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.93 E-value=2.7e-07 Score=105.07 Aligned_cols=360 Identities=9% Similarity=0.041 Sum_probs=218.2
Q ss_pred HHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCc-----hhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhh
Q 001249 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGW-----PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (1114)
Q Consensus 106 ~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w-----~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 180 (1114)
..+.+.|.+ +++.++..++.++..++... + ..+ ...+|.|.+++.++++..+..|..+|..++...++. ..
T Consensus 5 ~~lv~~L~s-~~~~~q~~A~~~L~~l~~~~-~-~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~-k~ 80 (457)
T 1xm9_A 5 PKAVQYLSS-QDEKYQAIGAYYIQHTCFQD-E-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN-KL 80 (457)
T ss_dssp HHHHHHHHS-SCTHHHHHHHHHHHHHTSSC-S-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH-HH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHHHcCC-h-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH-HH
Confidence 346677776 58889999999999987532 1 223 456899999999999999999999999998642221 11
Q ss_pred h--HHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHH----hC--------CCH
Q 001249 181 H--LKHLHAVFLNCLT-NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL----NN--------GNE 245 (1114)
Q Consensus 181 ~--~~~l~~~l~~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~----~~--------~~~ 245 (1114)
. -...+|.+.+.|. ++ +..++..|+.+|.++... +.. ........+|.+++.+.... .+ .++
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~-~~~-~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~ 157 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSST-DEL-KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTS-SST-HHHHHHHHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred HHHHcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcC-HHh-HHHHHhccHHHHHHHHhccccccccCccchhcccccH
Confidence 1 1245788888888 65 899999999999999976 221 11122356666666652100 11 356
Q ss_pred HHHHHHHHHHHHHHccchHHHHHHHH--HHHHHHHHHhcc----CCcchhHHHHHHHHHHHHHHhhh-ccchhhh-----
Q 001249 246 ATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEA----ESLEEGTRHLAIEFVITLAEARE-RAPGMMR----- 313 (1114)
Q Consensus 246 ~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~ll~~~~~----~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~----- 313 (1114)
++...++.+|..++.. ++....... ..++.++..+.. .+.++.++..++.++..++...+ ..+....
T Consensus 158 ~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~ 236 (457)
T 1xm9_A 158 EVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence 6777999999999876 433222221 455555554432 22345566667666665541000 0000000
Q ss_pred --------------------------------------cchh-hHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCc
Q 001249 314 --------------------------------------KLPQ-FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSN 354 (1114)
Q Consensus 314 --------------------------------------~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~ 354 (1114)
.... +-...++.++..|....+ ...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~----------------~~~ 300 (457)
T 1xm9_A 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK----------------DAT 300 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC----------------HHH
T ss_pred cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCC----------------HHH
Confidence 0000 002233333333322110 012
Q ss_pred hhhHHHHHHHHHHHcCCC--c----ch--HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhc
Q 001249 355 YSVGQECLDRLAIALGGN--T----IV--PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS 426 (1114)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~--~----~~--~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 426 (1114)
...+..+|..++..-+.. . ++ ...+|.+.+++.+++.++|..|+.+|+.++.+... ....-...++.++..
T Consensus 301 ~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~-~~~i~~~~i~~Lv~l 379 (457)
T 1xm9_A 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-HRVMGNQVFPEVTRL 379 (457)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG-HHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHH-HHHHHHhhhHHHHHh
Confidence 223445555554221100 0 11 12456677788899999999999999999875331 111113578888888
Q ss_pred CCCCCh------hHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCC-ChhHHHHHHHHHHHhhhc
Q 001249 427 FRDPHP------RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSEN 491 (1114)
Q Consensus 427 l~d~~~------~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~ 491 (1114)
|...++ .+..+++++|+.+...-......-.-...++.+.+.+.+ + +.+++..|++.|.+++.+
T Consensus 380 L~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~-~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 380 LTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRS-SASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp TTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTSSS
T ss_pred ccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcC-CCcHHHHHHHHHHHHHHHcc
Confidence 887643 578899999999876543322111234688889888888 6 889999999999988754
No 74
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.92 E-value=0.00029 Score=81.87 Aligned_cols=559 Identities=13% Similarity=0.100 Sum_probs=301.6
Q ss_pred hhhHHHHHHhhc-CCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcc
Q 001249 142 PELLPFMFQCVS-SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA 220 (1114)
Q Consensus 142 ~~ll~~l~~~~~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 220 (1114)
..++..+...+. ..+. ....-+.++..+...+.-.+.. +.-++..+.. ... ..+||..++-++..+.+..
T Consensus 131 ~~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~~~--~~~-~~~~~~~~l~i~~~~~~~~---- 201 (778)
T 3opb_A 131 IALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKE-VRFLVKELIL--RIS-EDEVKSMMLIIFAELQSSF---- 201 (778)
T ss_dssp HHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTT-TTHHHHHHHT--TTT-CHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccc-hhhHHHHhcc--ccC-hhhhHHHHHHHHHHHHHhC----
Confidence 344555544444 3343 4556677777777776654443 3333333322 343 7899999999998888765
Q ss_pred hHhHHHhhHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH--HHHHHHHHHhccCCcchhHHHHHHHH
Q 001249 221 DRDRFQDLLPLMMRTLT-ESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEF 297 (1114)
Q Consensus 221 ~~~~~~~l~p~ll~~l~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~ll~~~~~~~~~~~vr~~a~~~ 297 (1114)
.+.+.+.+..+++.+. +.=.+...+....++..+..+.-..|......+- .+.+.+...... ..+..+...++++
T Consensus 202 -~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~-~~~~~~~~a~L~l 279 (778)
T 3opb_A 202 -QKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFE-EQDLQFTKELLRL 279 (778)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhc-ccchHHHHHHHHH
Confidence 3456666666666333 2212222334455666666555444444333221 233444443322 2345667778888
Q ss_pred HHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcC-CCcchH
Q 001249 298 VITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG-GNTIVP 376 (1114)
Q Consensus 298 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~-~~~~~~ 376 (1114)
+...|..+ .+|. ...+..+++|...+.. + ..+..|.-+|-.+...-+ .+.-..
T Consensus 280 LsaACi~~-----~cR~--~I~~~~~~~L~~~l~~---~----------------~ir~lAavvL~KL~~~~~~~~~si~ 333 (778)
T 3opb_A 280 LSSACIDE-----TMRT--YITENYLQLLERSLNV---E----------------DVQIYSALVLVKTWSFTKLTCINLK 333 (778)
T ss_dssp HHHHCCSH-----HHHH--HHHHHHHHHHHHHTTS---G----------------GGHHHHHHHHHHHTGGGTCTTCCHH
T ss_pred HHHHhCCc-----HHHH--HHHHhHHHHHHHHhcc---H----------------HHHHHHHHHHHHHhcCCCCCcCcHH
Confidence 88877631 1222 1235566666665531 0 123344445555543322 123345
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcH--HHHHHhHHHHHHHHHhcCCC-CChhHHHHHHHHHHHhHhhhchhH
Q 001249 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCA--KVMVKNLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDL 453 (1114)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1114)
.+.+.+..++.+++-..|.-|+..|+.++.... +.+... +..++.++..+++ .+..+.+.++..++.++...+...
T Consensus 334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d-~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 334 QLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSN-ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHC-HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhC-HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence 577888888888776679999999999986543 222222 3557777777774 667789999999999987654311
Q ss_pred H-hhhhhhhHHHHHhh-ccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001249 454 Q-NQFHPQVLPALAGA-MDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1114)
Q Consensus 454 ~-~~~~~~il~~l~~~-l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~ 531 (1114)
. .+-+..+-+..-.. -...++......... +..+.. ..+.. ..+++.|..++.+.++.+|+.+..++..++
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~-v~~~~~----~~l~e--aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS 485 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKED-ILLFNE----KYILR--TELISFLKREMHNLSPNCKQQVVRIIYNIT 485 (778)
T ss_dssp CCCC------------------CCTHHHHHHH-HHHHHH----HHTTT--TTHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHH-HHHHHH----HHHHH--CcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 0 00111111111000 000000010011101 111100 00111 136788888899999999999999999997
Q ss_pred HhhhhhhhhhH-hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhh-hhhh-HHHHHHHHHHHhcC--CCC--
Q 001249 532 DSSQEHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDK-FRDD-AKQVMEVLMSLQGS--QME-- 604 (1114)
Q Consensus 532 ~~~~~~~~~~~-~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~-f~~~-~~~i~~~l~~~~~~--~~~-- 604 (1114)
..-. .-.... ...++.|..++.+....+ ...|..|..+++.+.....+.. |..| ....++.++.+... ...
T Consensus 486 ~d~~-~R~~lvqqGal~~LL~lL~s~~~~~-~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~ 563 (778)
T 3opb_A 486 RSKN-FIPQLAQQGAVKIILEYLANKQDIG-EPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDN 563 (778)
T ss_dssp TSGG-GHHHHHHTTHHHHHHHHTTCC---C-CHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSC
T ss_pred CCHH-HHHHHHHCCCHHHHHHHHhcCCCcc-hHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccc
Confidence 5422 111111 356778888776543221 2367788888888886554322 2222 12567777776552 111
Q ss_pred ---CCCc----hhhHHHHHHHHHHHHhc---cCCcc-chh--hhhHHHHHhccCCCCccccCCCCcccccCCCCcccchh
Q 001249 605 ---TDDP----TTSYMLQAWARLCKCLG---QDFLP-YMS--VVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETI 671 (1114)
Q Consensus 605 ---~~~~----~~~~~~~~~~~l~~~~~---~~~~~-~l~--~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1114)
.+++ .+-.++.++.+++..-+ ++... .+. ..+|.+...+..+
T Consensus 564 ~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~------------------------- 618 (778)
T 3opb_A 564 PLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE------------------------- 618 (778)
T ss_dssp C---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-------------------------
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-------------------------
Confidence 0111 14467778888887542 22222 232 3566666666321
Q ss_pred hcCCceeeecchhHHHHHHHHHHHHHHHHHhhh---hccccH-HH---HHHHhhhcccccCCHHHHHHHHHhHHHHHHHH
Q 001249 672 TLGDKRIGIKTSVLEEKATACNMLCCYADELKE---GFFPWI-DQ---VAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 744 (1114)
Q Consensus 672 ~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~---~~~p~~-~~---~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~ 744 (1114)
...-|.+|+.+++.++..-.. .|...- +. -++.++.+++. .+.++|.+|+.+++.+....
T Consensus 619 ------------n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 619 ------------NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp ------------SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHC
T ss_pred ------------CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCC
Confidence 013467899999999874332 233221 22 36677777765 48999999999999885422
Q ss_pred HHHHHcCCCCCCCHHHHHHHHH--HHHHHHHHHHccC-CcHHHHHHHHHHHHHHHHH
Q 001249 745 KLAIEKGLAPGRNESYVKQLSD--FIIPALVEALHKE-PDTEICASMLDSLNECIQI 798 (1114)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~--~i~~~l~~~~~~~-~~~~~~~~~l~~l~~~l~~ 798 (1114)
+...+.++. ..++.++..+.+- ++.+++...+.++..+...
T Consensus 686 -------------~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 686 -------------PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp -------------HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred -------------hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 111122221 2344455555542 5677877788777777653
No 75
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.81 E-value=1.6e-06 Score=78.21 Aligned_cols=214 Identities=14% Similarity=0.162 Sum_probs=159.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccch
Q 001249 231 LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG 310 (1114)
Q Consensus 231 ~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 310 (1114)
.+++.+...+.+.-+.+++.++.++..+.+.+++...|.+..++-.+-+ +..-..-...-..++.+++.
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k-----sEaIpltqeIa~a~G~la~i------ 100 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK-----SEAIPLTQEIAKAFGQMAKE------ 100 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH-----CCSHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh-----cccCchHHHHHHHHhHHHHh------
Confidence 4666677777777788999999999999999999999988877764432 11122222333556666662
Q ss_pred hhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCC
Q 001249 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPE 390 (1114)
Q Consensus 311 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~ 390 (1114)
.+..+.+++|.++....-.+ ....---.-+|+.++...| ...+.+..-+..++.|++
T Consensus 101 ----~Pe~v~~vVp~lfanyrigd-----------------~kikIn~~yaLeeIaranP--~l~~~v~rdi~smltskd 157 (253)
T 2db0_A 101 ----KPELVKSMIPVLFANYRIGD-----------------EKTKINVSYALEEIAKANP--MLMASIVRDFMSMLSSKN 157 (253)
T ss_dssp ----CHHHHHHHHHHHHHHSCCCS-----------------HHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHTSCSS
T ss_pred ----CHHHHHhhHHHHHHHHhcCC-----------------ccceecHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCC
Confidence 24677889999987544321 0112123457788887764 667777777888889999
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhcc
Q 001249 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMD 470 (1114)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~ 470 (1114)
-..|.+|+..++.+.+.... ++.+.+|.++..|.|.+..||..|..+|+.+++.-+ -+..++...++.++
T Consensus 158 ~~Dkl~aLnFi~alGen~~~----yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np------klRkii~~kl~e~~ 227 (253)
T 2db0_A 158 REDKLTALNFIEAMGENSFK----YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND------KLRKVVIKRLEELN 227 (253)
T ss_dssp HHHHHHHHHHHHTCCTTTHH----HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH------HHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHhccCcc----ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH------HHHHHHHHHHHHhc
Confidence 99999999999999988764 555667778889999999999999999999997532 25677777888999
Q ss_pred CCCChhHHHHHHHHHHHhh
Q 001249 471 DFQNPRVQAHAASAVLNFS 489 (1114)
Q Consensus 471 ~~~~~~v~~~a~~al~~l~ 489 (1114)
| ++..|+...-.+|+.+.
T Consensus 228 D-~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 228 D-TSSLVNKTVKEGISRLL 245 (253)
T ss_dssp C-SCHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHHHH
Confidence 9 88889888888888765
No 76
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.77 E-value=1.9e-07 Score=93.49 Aligned_cols=188 Identities=20% Similarity=0.280 Sum_probs=135.5
Q ss_pred CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhch
Q 001249 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1114)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1114)
....+...+.+.+.+++++|.+|..|+.+|+.+... ..++.+...+.|+++.+|..++++|+.+..
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---- 74 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE----------RAVEPLIKALKDEDAWVRRAAADALGQIGD---- 74 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG----------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh----------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence 345566777788889999999999999999987641 345677788899999999999999988642
Q ss_pred hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001249 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1114)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~ 531 (1114)
+..++.+...+.+ +++.+|..|+.+|..+.. +..++.|...++++++.+|..++.+++.+.
T Consensus 75 -------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 75 -------ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp -------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 2467778888888 899999999999988632 124566777888999999999999998874
Q ss_pred HhhhhhhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhh
Q 001249 532 DSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTS 611 (1114)
Q Consensus 532 ~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~ 611 (1114)
. +..++.|...+.+ +...+|..|+.+++.++ ... .++.+..+..+ .+..+|.
T Consensus 136 ~----------~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~----~~~-------~~~~L~~~l~d---~~~~vr~ 187 (201)
T 3ltj_A 136 D----------ERAVEPLIKALKD----EDGWVRQSAADALGEIG----GER-------VRAAMEKLAET---GTGFARK 187 (201)
T ss_dssp C----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC----SHH-------HHHHHHHHHHH---CCHHHHH
T ss_pred C----------HHHHHHHHHHHcC----CCHHHHHHHHHHHHHhC----chh-------HHHHHHHHHhC---CCHHHHH
Confidence 2 2355666666533 24568888888888773 222 23333332221 2345777
Q ss_pred HHHHHHHHH
Q 001249 612 YMLQAWARL 620 (1114)
Q Consensus 612 ~~~~~~~~l 620 (1114)
.+..+++.+
T Consensus 188 ~A~~aL~~l 196 (201)
T 3ltj_A 188 VAVNYLETH 196 (201)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 777777654
No 77
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.76 E-value=1e-07 Score=96.36 Aligned_cols=185 Identities=20% Similarity=0.271 Sum_probs=131.7
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh
Q 001249 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1114)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 457 (1114)
.++.+.+.+.+++|.+|..++.+|+.+.. +..++.+...+.|+++.||..++++|+.+..
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------- 79 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 79 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 44555566789999999999999998754 2456777888899999999999999988642
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001249 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1114)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~ 537 (1114)
+..++.+...+.+ +++.||..|+.+|..+.. +..++.|...++++++.+|..++.+++.+..
T Consensus 80 -~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 80 -ERAVEPLIKALKD-EDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp -GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred -HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 3466778888888 899999999999988742 1235677778899999999999999988742
Q ss_pred hhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHH
Q 001249 538 FQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAW 617 (1114)
Q Consensus 538 ~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 617 (1114)
+..++.|...+.+ ....+|..++.+++.+.. +..++.+..+.++ .+..+|..+..++
T Consensus 142 -----~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d---~~~~vr~~A~~aL 198 (211)
T 3ltm_A 142 -----ERAVEPLIKALKD----EDGWVRQSAADALGEIGG-----------ERVRAAMEKLAET---GTGFARKVAVNYL 198 (211)
T ss_dssp -----GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHH---CCHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 2355666666532 235688888888877732 2233333333221 2345888888887
Q ss_pred HHHHHH
Q 001249 618 ARLCKC 623 (1114)
Q Consensus 618 ~~l~~~ 623 (1114)
+.+...
T Consensus 199 ~~~~~~ 204 (211)
T 3ltm_A 199 ETHKSF 204 (211)
T ss_dssp HC----
T ss_pred HhcCCC
Confidence 766443
No 78
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.76 E-value=2.8e-07 Score=96.76 Aligned_cols=152 Identities=24% Similarity=0.253 Sum_probs=117.1
Q ss_pred HHHHH-hhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCC-CCChhHHHHHHHHHHHhHhhhchhHHhh
Q 001249 380 EQLPA-YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1114)
Q Consensus 380 ~~l~~-~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1114)
+.+.. .+.+++..+|..|+.+|+.++.+.+..-...+. ..++.++..|. ++++.+|..|+|+|+.++...++.. ..
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~-~~ 162 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGL-LQ 162 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHH-HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHH-HH
Confidence 33444 778999999999999999999876542222222 46777777777 5689999999999999997765533 22
Q ss_pred h-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCch--HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001249 457 F-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1114)
Q Consensus 457 ~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l--~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1114)
+ -...+|.|...+.+ +++.++..|+++|.+++... ++. ..++ ..+++.|+.++.+++..+++.++.+++.++..
T Consensus 163 ~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~~-~~~-~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVGH-PEH-KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHC-GGG-HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCC-hHH-HHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 2 24789999999998 89999999999999998763 222 1222 24788999999999999999999999999976
Q ss_pred hh
Q 001249 534 SQ 535 (1114)
Q Consensus 534 ~~ 535 (1114)
..
T Consensus 240 ~~ 241 (296)
T 1xqr_A 240 FP 241 (296)
T ss_dssp CH
T ss_pred Ch
Confidence 43
No 79
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.75 E-value=4.2e-07 Score=91.69 Aligned_cols=191 Identities=12% Similarity=0.105 Sum_probs=144.9
Q ss_pred CCChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCC
Q 001249 18 GPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1114)
Q Consensus 18 ~~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~ 97 (1114)
.-+++.+..+++.+.++|..+|..|-..|..+.. ++. ++.|...+. +.++.+|..|+..|.+.-.
T Consensus 15 ~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~~~-~~~L~~~l~-~~~~~vr~~a~~aL~~~~~----------- 79 (211)
T 3ltm_A 15 RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--ERA-VEPLIKALK-DEDAWVRRAAADALGQIGD----------- 79 (211)
T ss_dssp -CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--GGG-HHHHHHHTT-CSCHHHHHHHHHHHHHHCC-----------
T ss_pred hcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--ccH-HHHHHHHHc-CCCHHHHHHHHHHHHhhCC-----------
Confidence 3478899999999999999999999999988765 444 588888886 4689999999999988532
Q ss_pred HHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhh
Q 001249 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (1114)
Q Consensus 98 ~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~ 177 (1114)
++. ...|++.|.+ +++.+|..++.+++.+.. ++.++.|...+.++++.+|..++.+|+.+...
T Consensus 80 ~~~----~~~L~~~l~~-~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---- 142 (211)
T 3ltm_A 80 ERA----VEPLIKALKD-EDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE---- 142 (211)
T ss_dssp GGG----HHHHHHHTTC-SSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----
T ss_pred HHH----HHHHHHHHcC-CCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH----
Confidence 222 2345566665 789999999999987632 57889999999999999999999999987431
Q ss_pred hhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001249 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE 257 (1114)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~ 257 (1114)
..++.+...+.++ ++.||..|+.+|+.+-. +..+..+...++++++.+|..+...|..
T Consensus 143 ------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~---------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 143 ------RAVEPLIKALKDE-DGWVRQSAADALGEIGG---------------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp ------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2345677778887 99999999999987631 1334445555667899999999999987
Q ss_pred HHccc
Q 001249 258 LAGTE 262 (1114)
Q Consensus 258 l~~~~ 262 (1114)
+....
T Consensus 201 ~~~~~ 205 (211)
T 3ltm_A 201 HKSFN 205 (211)
T ss_dssp -----
T ss_pred cCCCC
Confidence 76543
No 80
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.74 E-value=3.3e-07 Score=96.19 Aligned_cols=179 Identities=17% Similarity=0.168 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHh-cCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhh
Q 001249 392 QKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGA 468 (1114)
Q Consensus 392 ~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~ 468 (1114)
..|..|+..|..+++..... .... ...++.++. .|.++++.||..|+|+|+.++..-+ ..+... -...+|.|+..
T Consensus 55 e~k~~Al~~L~~lv~~~dna-~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~-~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNA-ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHH-HHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhH-HHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHH
Confidence 57888888888888754321 1111 235678888 9999999999999999999986532 221112 23688999999
Q ss_pred ccCCCChhHHHHHHHHHHHhhhcCCcccccCch-HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhH--hhh
Q 001249 469 MDDFQNPRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAV 545 (1114)
Q Consensus 469 l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l-~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i 545 (1114)
|.+.++..++..|+++|++++.+.++. ...+. ...++.|..++++++..++..++.+|+.++....+ ...++ ..+
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~-~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~ 210 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAG-LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGM 210 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHH-HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChH-HHHHHHHcCC
Confidence 985257899999999999999765431 11222 25688999999999999999999999999976333 22222 357
Q ss_pred hHHHHHHHhhccCccchhhhHHHHHHHHHHHHH
Q 001249 546 MPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1114)
Q Consensus 546 ~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1114)
+|.|...+... +..++..++.+++.++..
T Consensus 211 i~~Lv~LL~~~----d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 211 VQQLVALVRTE----HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHTSC----CSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC----ChhHHHHHHHHHHHHHhC
Confidence 88888888653 345788899999888764
No 81
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.72 E-value=9e-08 Score=96.69 Aligned_cols=154 Identities=21% Similarity=0.258 Sum_probs=118.5
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhh
Q 001249 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1114)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1114)
.++.+.+.+.++++..|..|+.+|+.++.+..+.....+ ...++.++..|.++++.+|..|+++|+.++.........-
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445566677888999999999999999976654333222 2478899999999999999999999999987544332122
Q ss_pred hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001249 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1114)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~ 532 (1114)
.....++.+++.+.+ +++.++..|+++|.+++...+.....-.-...++.|..++.+.+..+|+.|+.+++.++.
T Consensus 135 ~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 135 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 345789999999998 889999999999999987533211111122468899999999999999999999998863
No 82
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.65 E-value=1.6e-06 Score=86.52 Aligned_cols=187 Identities=12% Similarity=0.119 Sum_probs=143.6
Q ss_pred CChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
-++.....+++.+.++|..+|..|-..|..+.. ++. +..|.+.+. +.++.+|..|+..|.+.-. +
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--~~~-~~~L~~~l~-~~~~~vr~~a~~~L~~~~~-----------~ 75 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--ERA-VEPLIKALK-DEDAWVRRAAADALGQIGD-----------E 75 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--GGG-HHHHHHHTT-CSSHHHHHHHHHHHHHHCC-----------G
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--hhH-HHHHHHHHc-CCCHHHHHHHHHHHHhhCC-----------H
Confidence 456788899999999999999999999988765 343 578888885 6689999999999987532 2
Q ss_pred HHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhh
Q 001249 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1114)
+. ...|.+.|.+ +++.+|..++.+++.+.. ++.++.+...+.++++.+|..++.+|+.+..
T Consensus 76 ~~----~~~L~~~l~d-~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 136 (201)
T 3ltj_A 76 RA----VEPLIKALKD-EDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 136 (201)
T ss_dssp GG----HHHHHHHTTC-SSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC------
T ss_pred HH----HHHHHHHHcC-CCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------
Confidence 22 2445566665 689999999999987632 5688889999999999999999999998753
Q ss_pred hhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 001249 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1114)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l 258 (1114)
...++.+...+.++ ++.||..|+.+++.+-. . ..+..+...++++++.+|..+.+.|..+
T Consensus 137 ----~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~-------~--------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ----ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-------E--------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp ----GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-------H--------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-------h--------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 12345677778887 99999999999987721 1 2333444455678999999999888765
Q ss_pred H
Q 001249 259 A 259 (1114)
Q Consensus 259 ~ 259 (1114)
-
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 3
No 83
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.65 E-value=2.5e-06 Score=85.96 Aligned_cols=189 Identities=14% Similarity=0.157 Sum_probs=147.8
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchh---HHhhh-
Q 001249 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD---LQNQF- 457 (1114)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~- 457 (1114)
+...+-+.+|+.|.+|+..|....+..++.+...++-+++.+.-.+.|.|+.|-..++..|..+...+... + ..|
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~-~~~e 129 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM-SQEE 129 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc-hHHH
Confidence 34455678999999999999998887777777777778887777788999999999999999887766542 3 233
Q ss_pred hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhh
Q 001249 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1114)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~ 537 (1114)
...++|.++..+.| +...+|..+-..+..+...+++. .+++.+...+.+.+..+|+..+..++.+....|..
T Consensus 130 a~~~lP~LveKlGd-~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 130 VSAFVPYLLLKTGE-AKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 57899999999999 88999999999998887655432 35677777889999999999999999999988765
Q ss_pred hhhhHhhhh---HHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhH
Q 001249 538 FQKYYDAVM---PFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA 588 (1114)
Q Consensus 538 ~~~~~~~i~---~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~ 588 (1114)
.. ..+ |.+...+.+ .+..+|..|+.|+..+-..+| +.+..++
T Consensus 202 ~~----~~l~~~~~ia~ll~D----~d~~VR~aAl~~lve~y~~~G-d~v~k~l 246 (266)
T 2of3_A 202 PL----KSLSVEKTVAPFVGD----KDVNVRNAAINVLVACFKFEG-DQMWKAA 246 (266)
T ss_dssp GG----GGGCHHHHHGGGGGC----SSHHHHHHHHHHHHHHHHHHT-THHHHHH
T ss_pred cc----ccccchHHHHHHHcC----CCHHHHHHHHHHHHHHHHHhh-HHHHHHH
Confidence 32 234 555555432 345799999999999999999 5555543
No 84
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.61 E-value=8.2e-07 Score=93.65 Aligned_cols=189 Identities=13% Similarity=0.158 Sum_probs=141.5
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHhhcHHHH-----HHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhH---
Q 001249 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVM-----VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL--- 453 (1114)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~-----~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--- 453 (1114)
+.+.+.|.+|+.|..|+..+..+....+... ...+..+.+.+.+.+.|.|..|...++.++..++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4567889999999999999998877654321 11234456677788999999999999999999988664321
Q ss_pred --HhhhhhhhHHHHHhh-ccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001249 454 --QNQFHPQVLPALAGA-MDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1114)
Q Consensus 454 --~~~~~~~il~~l~~~-l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l 530 (1114)
...+...++|.++.. +.+ +.+.++..+..++..+++... ....+++.+...+++.++.++..++..+..+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~-~k~~~~~~a~~~l~~~~~~~~------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTS-SRATTKTQSMSCILSLCGLDT------SITQSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSC-CCHHHHHHHHHHHHHHHHTSS------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHhcC------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 134567888888864 788 788999999999988887543 2345677788889999999999999999999
Q ss_pred HHhhhhh---hhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhch
Q 001249 531 ADSSQEH---FQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK 581 (1114)
Q Consensus 531 ~~~~~~~---~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~ 581 (1114)
....|.. ..+.++.+++.+...+.. .+..+|..|+++++.+.+.+|.
T Consensus 167 l~~fg~~~~~~k~~l~~i~~~l~k~l~d----~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFLPELLKHVPQLAGH----GDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp HHHHTTTTCCHHHHHHHHGGGHHHHHTC----SSHHHHHHHHHHHHHHHTC---
T ss_pred HHHhCCCcCCchhHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHHHHHhCc
Confidence 8877643 234667777877777654 3457999999999999988883
No 85
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.54 E-value=0.0002 Score=85.68 Aligned_cols=156 Identities=13% Similarity=0.179 Sum_probs=95.5
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHH-HHHhhccCCCChhHHHHHHHHHHHhhhcCCccc
Q 001249 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP-ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1114)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~-~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 496 (1114)
.++|.+ +.|+++++..|..|+++|+.+++.-...- .-....++. .+...+.| ++..||.+|+.+|++++...+.+.
T Consensus 35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~~~-l~~~~~~v~~ll~~lL~D-~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKCRK-LLLREQVVHIVLTETLTD-NNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHHHH-HHHHTTHHHHHHHTTTTC-SCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHHHH-HHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCchH
Confidence 355544 45889999999999999999996432211 112334554 45567888 899999999999999987655432
Q ss_pred ccC-chHHHHHHHHHHhhc-------C-------C-------hhHHHHHHHHHHHHHHhhhhhhhhhH-hhhhHHHHHHH
Q 001249 497 LTP-YLDGIVSKLLVLLQN-------G-------K-------QMVQEGALTALASVADSSQEHFQKYY-DAVMPFLKAIL 553 (1114)
Q Consensus 497 l~~-~l~~il~~L~~~l~~-------~-------~-------~~v~~~al~~l~~l~~~~~~~~~~~~-~~i~~~L~~~l 553 (1114)
... +-..+++.|..+++. . . ..+.+.++.++..++......+.... ...++.|+..+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 111 111234444443321 1 0 23445677777788776655443222 34566666666
Q ss_pred hhccCccchhhhHHHHHHHHHHHH
Q 001249 554 VNATDKSNRMLRAKSMECISLVGM 577 (1114)
Q Consensus 554 ~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1114)
.... .....++..|..|+..+..
T Consensus 192 ~~~~-~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 192 ISAD-IAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HHHC-CSCHHHHHHHHHHHHHHHT
T ss_pred HhcC-CCcHHHHHHHHHHHHHHhc
Confidence 4422 2234578888889887764
No 86
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.54 E-value=6.4e-05 Score=68.04 Aligned_cols=215 Identities=15% Similarity=0.176 Sum_probs=158.7
Q ss_pred HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccC
Q 001249 272 DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGE 351 (1114)
Q Consensus 272 ~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~ 351 (1114)
.++.-++..+. ++-..++..|+..+.++++. . +.....++..|+-++...+.-+
T Consensus 32 ~~l~~lI~~LD--DDlwtV~kNAl~vi~~i~~~---~-------~el~epl~~kL~vm~~ksEaIp-------------- 85 (253)
T 2db0_A 32 SVLKKLIELLD--DDLWTVVKNAISIIMVIAKT---R-------EDLYEPMLKKLFSLLKKSEAIP-------------- 85 (253)
T ss_dssp HHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTT---C-------GGGHHHHHHHHHHHHHHCCSHH--------------
T ss_pred HHHHHHHHHhc--cHHHHHHHhHHHHHHHHHHH---h-------HHHHHHHHHHHHHHHhhcccCc--------------
Confidence 44444555552 22345899999999999883 2 3455666666666655443211
Q ss_pred CCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCC
Q 001249 352 SSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPH 431 (1114)
Q Consensus 352 ~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~ 431 (1114)
.-..-...++.++..-| +.+..+.|.+.....-.+++.|-..-++|+.++...+. .++.++.-+...+.+++
T Consensus 86 --ltqeIa~a~G~la~i~P--e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd 157 (253)
T 2db0_A 86 --LTQEIAKAFGQMAKEKP--ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKN 157 (253)
T ss_dssp --HHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSS
T ss_pred --hHHHHHHHHhHHHHhCH--HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCC
Confidence 11223457777776654 56666778887777777999999999999999988775 44566677777888999
Q ss_pred hhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHH
Q 001249 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 511 (1114)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~ 511 (1114)
..=|.+|+..++.+++.- ..|....+|.++..|.| .+.-||.+|..+|..+.+.- |-+..++..-+.-
T Consensus 158 ~~Dkl~aLnFi~alGen~-----~~yv~PfLprL~aLL~D-~deiVRaSaVEtL~~lA~~n------pklRkii~~kl~e 225 (253)
T 2db0_A 158 REDKLTALNFIEAMGENS-----FKYVNPFLPRIINLLHD-GDEIVRASAVEALVHLATLN------DKLRKVVIKRLEE 225 (253)
T ss_dssp HHHHHHHHHHHHTCCTTT-----HHHHGGGHHHHHGGGGC-SSHHHHHHHHHHHHHHHTSC------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccC-----ccccCcchHHHHHHHcC-cchhhhHHHHHHHHHHHHcC------HHHHHHHHHHHHH
Confidence 888999999998887643 37888999999999999 89999999999999987643 3466677777777
Q ss_pred hhcCChhHHHHHHHHHHHHHH
Q 001249 512 LQNGKQMVQEGALTALASVAD 532 (1114)
Q Consensus 512 l~~~~~~v~~~al~~l~~l~~ 532 (1114)
+++.+..++...-.+++.+.-
T Consensus 226 ~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 226 LNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp CCCSCHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHH
Confidence 889998888888888887764
No 87
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.50 E-value=0.00016 Score=85.72 Aligned_cols=329 Identities=14% Similarity=0.084 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHhcccCCCCchhhHHHHHHhhc---CCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCC
Q 001249 121 SKKLCDTVSELASNILPENGWPELLPFMFQCVS---SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN 197 (1114)
Q Consensus 121 r~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~---~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 197 (1114)
+-.++..+|.|-. +.+.+-+..|...+- ++++..|.+|+..++.+....... .+..+...+.++.
T Consensus 375 k~sA~aSLGlIh~-----g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-------~~~lL~~~L~~~~ 442 (963)
T 4ady_A 375 KFTATASLGVIHK-----GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-------TTDYLKNIIVENS 442 (963)
T ss_dssp HHHHHHHHHHHTS-----SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-------HHHHHHHHHHHHS
T ss_pred HHHHHHHhhhhcc-----CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHcCcc
Confidence 3344455554432 223456777777775 567889999999999987765532 2334444444431
Q ss_pred -------ChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-Hc-cchHHHHH
Q 001249 198 -------NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL-AG-TEPRFLRR 268 (1114)
Q Consensus 198 -------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l-~~-~~~~~~~~ 268 (1114)
.+.+|..|+-.|+.+...-. .. .+++.|...+.+.+...+..+...++.+ +. .....+
T Consensus 443 ~~~~~~~~~~ir~gAaLGLGla~~GS~---~e--------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai-- 509 (963)
T 4ady_A 443 GTSGDEDVDVLLHGASLGIGLAAMGSA---NI--------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAI-- 509 (963)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHSTTCC---CH--------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHH--
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCC---CH--------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHH--
Confidence 26789998888886543221 11 2333334444455555555555555543 12 222222
Q ss_pred HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCcc
Q 001249 269 QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDED 348 (1114)
Q Consensus 269 ~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed 348 (1114)
..++..+.. +.++.+|..+...+.-+.-. . +..++.++..+.. ..
T Consensus 510 --~~LL~~~~e-----~~~e~vrR~aalgLGll~~g---~-------~e~~~~li~~L~~----~~-------------- 554 (963)
T 4ady_A 510 --HDMFTYSQE-----TQHGNITRGLAVGLALINYG---R-------QELADDLITKMLA----SD-------------- 554 (963)
T ss_dssp --HHHHHHHHH-----CSCHHHHHHHHHHHHHHTTT---C-------GGGGHHHHHHHHH----CS--------------
T ss_pred --HHHHHHHhc-----cCcHHHHHHHHHHHHhhhCC---C-------hHHHHHHHHHHHh----CC--------------
Confidence 233333221 23677887776666544321 1 1233444444322 11
Q ss_pred ccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh-cC
Q 001249 349 AGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN-SF 427 (1114)
Q Consensus 349 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~-~l 427 (1114)
+...+..+.-++..-...-|....+. .++....++.+..+|.+|+.+||.+.-+-++ .++.++. .+
T Consensus 555 --dp~vRygaa~alglAyaGTGn~~aIq---~LL~~~~~d~~d~VRraAViaLGlI~~g~~e--------~v~rlv~~L~ 621 (963)
T 4ady_A 555 --ESLLRYGGAFTIALAYAGTGNNSAVK---RLLHVAVSDSNDDVRRAAVIALGFVLLRDYT--------TVPRIVQLLS 621 (963)
T ss_dssp --CHHHHHHHHHHHHHHTTTSCCHHHHH---HHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS--------SHHHHTTTGG
T ss_pred --CHHHHHHHHHHHHHHhcCCCCHHHHH---HHHHHhccCCcHHHHHHHHHHHHhhccCCHH--------HHHHHHHHHH
Confidence 11112112111111111112222222 2344445677889999999999998765431 2333333 34
Q ss_pred CCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHH
Q 001249 428 RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK 507 (1114)
Q Consensus 428 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~ 507 (1114)
.+.++.||..+..+||.++..-+ ...++..|.....| ++..||..|+.+|+.+..... +...|.+..++..
T Consensus 622 ~~~d~~VR~gAalALGli~aGn~-------~~~aid~L~~L~~D-~d~~Vrq~Ai~ALG~Ig~gtn-na~~~rva~~l~~ 692 (963)
T 4ady_A 622 KSHNAHVRCGTAFALGIACAGKG-------LQSAIDVLDPLTKD-PVDFVRQAAMIALSMILIQQT-EKLNPQVADINKN 692 (963)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSSC-------CHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHSTTCC-TTTCTTHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhccCCC-------cHHHHHHHHHHccC-CCHHHHHHHHHHHHHHhcCCc-cccchHHHHHHHH
Confidence 57899999999999999874432 24567777777788 899999999999998876654 3345788999999
Q ss_pred HHHHhhc--CChhHHHHHHHHHHHHH
Q 001249 508 LLVLLQN--GKQMVQEGALTALASVA 531 (1114)
Q Consensus 508 L~~~l~~--~~~~v~~~al~~l~~l~ 531 (1114)
|.+...+ .+...+-.+.-+.|.+-
T Consensus 693 L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 693 FLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHh
Confidence 9888875 35666766666666554
No 88
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.45 E-value=2.3e-05 Score=84.71 Aligned_cols=271 Identities=14% Similarity=0.076 Sum_probs=157.4
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhhH--HHHHHHHHHhhc----------CCCChHHHHHHHHHHHHHHHhcCCcchHhH
Q 001249 157 VKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLT----------NSNNPDVKIAALNAVINFIQCLTSSADRDR 224 (1114)
Q Consensus 157 ~~~r~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~----------~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 224 (1114)
......|+.+|+.+..+. ..+..+ ...++.+...|. +..++.+|..|+.+|.++...- ......
T Consensus 46 ~~~~~~A~~aL~nls~d~--e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~--~~~k~~ 121 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDE--EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD--VANKAT 121 (354)
T ss_dssp GGTHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSC--HHHHHH
T ss_pred hHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCC--HHHHHH
Confidence 355667788888887541 122111 123334444432 1124678999999999987532 111111
Q ss_pred HHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH--HHHHHHHHHhccCCcchhHHHHHHHHHHHHH
Q 001249 225 FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLA 302 (1114)
Q Consensus 225 ~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~ 302 (1114)
+.. ....+..|...+.+++++++..++.+|..++.......+..+. ..++.+++++.. ..+.+++..|...+..++
T Consensus 122 i~~-~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~-~~~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 122 LCS-MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE-VKKESTLKSVLSALWNLS 199 (354)
T ss_dssp HHH-CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
T ss_pred HHH-cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 210 1233445555566889999999999999998642122222211 345555554321 235678888888888877
Q ss_pred Hh-hhccchhhhcchhhH--HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHH
Q 001249 303 EA-RERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVAS 379 (1114)
Q Consensus 303 ~~-~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~ 379 (1114)
.. .+..+ .+. ...+|.|...+....+
T Consensus 200 ~~~~~nk~-------~i~~~~Gai~~Lv~lL~~~~~-------------------------------------------- 228 (354)
T 3nmw_A 200 AHCTENKA-------DICAVDGALAFLVGTLTYRSQ-------------------------------------------- 228 (354)
T ss_dssp TTCHHHHH-------HHHHSTTHHHHHHHHTTCCCS--------------------------------------------
T ss_pred ccChhhhH-------HHHHhcCcHHHHHHHhccCCC--------------------------------------------
Confidence 62 11100 111 2234444444322110
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHh---hcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHh
Q 001249 380 EQLPAYLAAPEWQKHHAALIALAQIAE---GCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1114)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~---~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1114)
+.++..++.|..+|..++. +..+...... ...++.++..|.+.+..++..|+++|+.++.........
T Consensus 229 --------~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 300 (354)
T 3nmw_A 229 --------TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 300 (354)
T ss_dssp --------SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred --------cccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHH
Confidence 0112345556666666654 3333221111 136788899999999999999999999998533222211
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001249 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1114)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1114)
-.-...+|.|.+.+.+ ++++++..|+++|.+++...+
T Consensus 301 i~~~G~i~~Lv~LL~s-~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 301 LWDMGAVSMLKNLIHS-KHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp HHHTTHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCCH
Confidence 1235789999999998 899999999999999998754
No 89
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.40 E-value=1.2e-05 Score=86.89 Aligned_cols=223 Identities=15% Similarity=0.124 Sum_probs=147.4
Q ss_pred chhHHHHHHHHHHHHHHhhhccchhhhcchhhH---HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHH
Q 001249 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFI---NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLD 363 (1114)
Q Consensus 287 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~---~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~ 363 (1114)
+.+++..|...+..++..... ....+ ...+|.|+..|...++ .....+..+|.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~-------~k~~i~~~~GaIp~LV~LL~s~~~-----------------~v~~~A~~aL~ 152 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVA-------NKATLCSMKGCMRALVAQLKSESE-----------------DLQQVIASVLR 152 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHH-------HHHHHHHCHHHHHHHHHGGGCSCH-----------------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHH-------HHHHHHHcCCcHHHHHHHHCCCCH-----------------HHHHHHHHHHH
Confidence 456889999999999863210 11122 3568888888753211 13345666676
Q ss_pred HHHHHcCC--C-cch-HHHHHHHHHh-hCCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhcCCCCCh----
Q 001249 364 RLAIALGG--N-TIV-PVASEQLPAY-LAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRDPHP---- 432 (1114)
Q Consensus 364 ~l~~~~~~--~-~~~-~~l~~~l~~~-l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d~~~---- 432 (1114)
.++..-.. + .+. .-.+|.+.+. ..+.+...++.++.+|..++..+.+.-.... ...++.+...|.+.++
T Consensus 153 nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~ 232 (354)
T 3nmw_A 153 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 232 (354)
T ss_dssp HHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCC
T ss_pred HHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccH
Confidence 66542100 0 111 1134444443 4567889999999999999986654222222 3578888888887655
Q ss_pred hHHHHHHHHHHHhHhhh--chhHHhh-hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCch--HHHHHH
Q 001249 433 RVRWAAINAIGQLSTDL--GPDLQNQ-FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSK 507 (1114)
Q Consensus 433 ~vr~~a~~~l~~l~~~~--~~~~~~~-~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l--~~il~~ 507 (1114)
.++..|+++|..++..+ .+..... .-...+|.|+..|.+ ++..++..|+++|.+++.... +. ...+ ...++.
T Consensus 233 ~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nLa~~~~-~~-~~~i~~~G~i~~ 309 (354)
T 3nmw_A 233 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNP-KD-QEALWDMGAVSM 309 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCH-HH-HHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC-CChHHHHHHHHHHHHHhCCCH-HH-HHHHHHCCCHHH
Confidence 48999999999988631 2221111 124679999999998 889999999999999975322 11 1112 245889
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001249 508 LLVLLQNGKQMVQEGALTALASVADSSQE 536 (1114)
Q Consensus 508 L~~~l~~~~~~v~~~al~~l~~l~~~~~~ 536 (1114)
|..++++.+..+|+.|..++..++..-+.
T Consensus 310 Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 310 LKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999976443
No 90
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.29 E-value=1.7e-05 Score=79.89 Aligned_cols=161 Identities=14% Similarity=0.120 Sum_probs=126.8
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHH---HHH-hHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhH
Q 001249 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKV---MVK-NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1114)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~---~~~-~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1114)
++.++.-.+.+.+..+-..++..+..+.....+. +.+ ....++|.++.-+.|+...||..+-.++..+...+++
T Consensus 88 l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-- 165 (266)
T 2of3_A 88 LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-- 165 (266)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH--
Confidence 4555555556788998889999998887654431 222 2567899999999999999999999999888765544
Q ss_pred HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHH---HHHHHHhhcCChhHHHHHHHHHHHH
Q 001249 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIV---SKLLVLLQNGKQMVQEGALTALASV 530 (1114)
Q Consensus 454 ~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il---~~L~~~l~~~~~~v~~~al~~l~~l 530 (1114)
..+++.+++.+.+ .++++|..++..+..+++..+.. | ...+ +.+.+++.+++..||..|+.++..+
T Consensus 166 -----~~v~~~l~~g~ks-KN~R~R~e~l~~l~~li~~~G~~---~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 166 -----LKMTPMLLDALKS-KNARQRSECLLVIEYYITNAGIS---P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp -----HHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHCSG---G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHhcCCC---c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3477888889988 89999999999999999987754 1 2235 8888999999999999999999999
Q ss_pred HHhhhhhhhhhHhhhhHHHHH
Q 001249 531 ADSSQEHFQKYYDAVMPFLKA 551 (1114)
Q Consensus 531 ~~~~~~~~~~~~~~i~~~L~~ 551 (1114)
-...|+.+..|++.+=+.-.+
T Consensus 235 y~~~Gd~v~k~lg~L~~~~~~ 255 (266)
T 2of3_A 235 FKFEGDQMWKAAGRMADKDKS 255 (266)
T ss_dssp HHHHTTHHHHHHCCCCHHHHH
T ss_pred HHHhhHHHHHHHhcCCHHHHH
Confidence 999999888877654443333
No 91
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.27 E-value=0.00044 Score=84.67 Aligned_cols=465 Identities=11% Similarity=0.056 Sum_probs=218.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchH---HHHHHHHHHcc---CC-CHHHHHHHHHHHH----HhcccCCC
Q 001249 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDS---LTLKLAHLLQR---SP-HPEARAMAAVLLR----KLLTRDDS 90 (1114)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~---~~~~L~~il~~---~~-~~~~R~~A~~~Lk----~~l~~~~~ 90 (1114)
.=+..+++-..|.=.++|+.|+..|....+..|.. +++.+++.|.. +. ...++-.--+++. +.+..+
T Consensus 133 ~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d-- 210 (997)
T 1vsy_5 133 LLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTD-- 210 (997)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGC--
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcC--
Confidence 34667777778888999999999999866655544 35666777754 22 2333222222221 222222
Q ss_pred CcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHh
Q 001249 91 FLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1114)
Q Consensus 91 ~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l 170 (1114)
|. ....+-..|++.... ..+.|++.+..+...+.........+..+-..+...+..++... ..+.......
T Consensus 211 --~~-----~~~~~~~ali~~~~~-dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i-~~~~~~~~~~ 281 (997)
T 1vsy_5 211 --YK-----DIGRLIFLLIECCRV-NELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTI-NLQVEAVKLA 281 (997)
T ss_dssp --HH-----HHHHHHHHHHHTCSC-SSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSST-TSHHHHHHHH
T ss_pred --hH-----HHHHHHHHHHHhCcC-CCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHH-HHHHHHHHHH
Confidence 42 333444455555444 36677776666666665543221222111111112222222111 1222222222
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHH
Q 001249 171 SQYIGDTLTPHLKHLHAVFLNCLTNSNN--PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATA 248 (1114)
Q Consensus 171 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~ 248 (1114)
.+.--......+..+...+....++... +.....++..+..+....+.+.. |..++.+.+.+.++.+..|
T Consensus 282 ~~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~~--------~~~v~~~~~~l~~dhp~~R 353 (997)
T 1vsy_5 282 KKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPD--------KRAVFSIISQISTKHPEII 353 (997)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCCC--------HHHHHHHHGGGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCCC--------HHHHHHHHHhhcCCCHHHH
Confidence 2111111112233444444455433335 77777777776666654432222 2466666777778899999
Q ss_pred HHHHHHHHHHHccchH-HHHHHHHHHHHHHHHHhccCC-------cchhHHHHHHHHHHHHHHhh-------hc-cchhh
Q 001249 249 QEALELLIELAGTEPR-FLRRQLVDVVGSMLQIAEAES-------LEEGTRHLAIEFVITLAEAR-------ER-APGMM 312 (1114)
Q Consensus 249 ~~~~~~l~~l~~~~~~-~~~~~~~~l~~~ll~~~~~~~-------~~~~vr~~a~~~l~~l~~~~-------~~-~~~~~ 312 (1114)
..++.++..+...... ...++ ++ ..+......++ .+.+.... +..++.+.+ .+ .+++.
T Consensus 354 ~~a~~~l~~il~~~k~~~~~~~--d~-~~~~~~~~~p~~~~l~~~~~~~~~~~---~~~~~~~~~~~~yfid~~~~~Gwl 427 (997)
T 1vsy_5 354 HLVVKSLLSTCNKIISLSDYEY--DI-TRAYKNEFNPSFVEILDTSTTSFPKT---FTEEMNNFDNPKYFIDLRAYVGWL 427 (997)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTT--CG-GGGSSSSCCCTTEEEEESCSTTTHHH---HHHHHSCCSSCCCBCCSCCCSBTT
T ss_pred HHHHHHHHHHHHHHHhhhcCCC--cH-HHhhccccCCCCceecCCCCccHHHH---HHHHHhcccCCccceeCCCCCeEe
Confidence 9999888776653211 11111 00 00000000000 01111111 111110000 00 00000
Q ss_pred -------------h--cch-------hhH-----HHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHH
Q 001249 313 -------------R--KLP-------QFI-----NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRL 365 (1114)
Q Consensus 313 -------------~--~~~-------~~~-----~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l 365 (1114)
. .+. ..+ +..+..++..+.+ |.++.+..+.. ....+..+
T Consensus 428 ~Wp~~~~vy~p~~~~l~~~~~e~~i~~~f~~~~~~~~~~~l~~~l~q------------e~~~~~~F~~~--~v~l~k~l 493 (997)
T 1vsy_5 428 CWGRLMYVMSPKALKLNLRENELEVLKTAGHLLTREFLRDVTMNLVQ------------DNETRGVFSSG--NVSFFSLV 493 (997)
T ss_dssp BCCSEEEEECTTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH------------TTTTTCCCCHH--HHHHHHHH
T ss_pred eeCCceeEeCCCCCCCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHh------------hccccCccccc--hHHHHHHH
Confidence 0 000 000 1122222222221 11111222222 22334444
Q ss_pred H----HHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHH----HHHHhHHHHHHHHHhcCC-CCChhHHH
Q 001249 366 A----IALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK----VMVKNLEQVLSMVLNSFR-DPHPRVRW 436 (1114)
Q Consensus 366 ~----~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~----~~~~~l~~i~~~l~~~l~-d~~~~vr~ 436 (1114)
. ..+| +..++.+.+.+..+..+.+-....+|...++.+..|.+. .....-.-+.|.+...+. +-++....
T Consensus 494 f~l~~rn~~-~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~ 572 (997)
T 1vsy_5 494 ILLISSGFC-ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFE 572 (997)
T ss_dssp HHHHTTTTC-CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHH
T ss_pred HHHHhcccc-hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHH
Confidence 4 4566 789999999999999988888888888899888887542 223333445555555555 34444332
Q ss_pred HHHHHHHHhHhhhchhHHhhhhhhhHHHHH--hh-c-cCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh
Q 001249 437 AAINAIGQLSTDLGPDLQNQFHPQVLPALA--GA-M-DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (1114)
Q Consensus 437 ~a~~~l~~l~~~~~~~~~~~~~~~il~~l~--~~-l-~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l 512 (1114)
.=..++..+.....+ .-...++..++ +. + .+..+.-....-...|..++...+-. + +....++..++ +
T Consensus 573 ~W~~~i~~~~~~~Dp----rR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr-~-~~~~~~l~~~~--l 644 (997)
T 1vsy_5 573 IWSTLAWWLPAVVDL----RRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFR-A-PDVGKLFDELV--F 644 (997)
T ss_dssp HHHHHHHHHHHHSCG----GGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTS-S-CCCHHHHHHCC--S
T ss_pred HHHHHHHHHhcCCCh----hhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccc-c-ccHHHHHHHHH--h
Confidence 211122222222222 23445666552 21 1 11122222233344454444433322 2 22566666666 8
Q ss_pred hcCChhHHHHHHHHHHHHHHhh
Q 001249 513 QNGKQMVQEGALTALASVADSS 534 (1114)
Q Consensus 513 ~~~~~~v~~~al~~l~~l~~~~ 534 (1114)
+++...||+..-.+++.+....
T Consensus 645 ~h~y~~VRe~Ig~~L~~i~~~~ 666 (997)
T 1vsy_5 645 DHPYDQVRQAVAKLLTTLVQNQ 666 (997)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHHHHHhh
Confidence 8888999999888888777653
No 92
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.22 E-value=0.00019 Score=68.47 Aligned_cols=184 Identities=12% Similarity=0.148 Sum_probs=145.0
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhh
Q 001249 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1114)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1114)
.+..+..++.+.|..++..++.+++.+....++.+. ..+..+++.++..+.+.+.+|--.|..||+.+.+..+.. ..
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~--~~ 111 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG--SK 111 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC--HH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC--HH
Confidence 344556677889999999999999999998765443 567889999999999999999999999999999877644 35
Q ss_pred hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh
Q 001249 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1114)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~ 536 (1114)
.+..+...+...+.+ ++.-++..+...++.+ + +....+.++..+.+++.+.++.++..++.++-.++...++
T Consensus 112 ~y~Kl~~aL~dlik~-~~~il~~eaae~Lgkl----k---v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 112 TFLKAAKTLVSLLES-PDDMMRIETIDVLSKL----Q---PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp HHHHHHHHHHHHTTS-CCHHHHHHHHHHHHHC----C---BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHHHHhCcC----C---cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 677888888888887 8899999999999887 2 2344678889999999999999999999999999876653
Q ss_pred hhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHH
Q 001249 537 HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1114)
Q Consensus 537 ~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1114)
. ..+..++.-+...++.. +..++..|+..+-.+..
T Consensus 184 ~--~i~~~I~~eI~elL~~e----D~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 184 S--GHLTLILDEIPSLLQND----NEFIVELALDVLEKALS 218 (265)
T ss_dssp C--CCGGGTTTTHHHHHTCS----CHHHHHHHHHHHHHHTT
T ss_pred H--HHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHc
Confidence 1 23445555555665442 45678888888766654
No 93
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.21 E-value=1.9e-05 Score=83.94 Aligned_cols=301 Identities=12% Similarity=0.129 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHhcc-cCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCC
Q 001249 120 ISKKLCDTVSELASNI-LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNN 198 (1114)
Q Consensus 120 vr~~~~~~i~~ia~~~-~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 198 (1114)
.|+.+..++..+.... ++......+++.+..++++++...|..+...+..+.+. ++.. + -+...+.+-++++ +
T Consensus 44 c~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~---i-Lv~Nsl~kDl~~~-N 117 (355)
T 3tjz_B 44 CAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDV---I-IVTSSLTKDMTGK-E 117 (355)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCG---G-GGHHHHHHHHHSS-C
T ss_pred HHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHH---H-HHHHHHHhhcCCC-c
Confidence 4456667776665531 11112457788888899999999999888888877766 2221 1 3455667778887 9
Q ss_pred hHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Q 001249 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSML 278 (1114)
Q Consensus 199 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll 278 (1114)
+-+|-.|+++++.+... ++++.+...+.+++.+.++.+|+.|+-+...+....|+.....+..+-
T Consensus 118 ~~iR~lALRtL~~I~~~-----------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~---- 182 (355)
T 3tjz_B 118 DSYRGPAVRALCQITDS-----------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQ---- 182 (355)
T ss_dssp HHHHHHHHHHHHHHCCT-----------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHH----
T ss_pred HhHHHHHHHHHhcCCCH-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHH----
Confidence 99999999999988642 245567777888889999999999999999999888887665444333
Q ss_pred HHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhH
Q 001249 279 QIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVG 358 (1114)
Q Consensus 279 ~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a 358 (1114)
..+. +.+..+...|+.++..+.+. . ...+.++++.+.. .. ..++|..
T Consensus 183 ~ll~--d~n~~V~~~Al~lL~ei~~~---d-------~~a~~kLv~~l~~----~~----------------l~~~~~q- 229 (355)
T 3tjz_B 183 EAAS--SDNIMVQYHALGLLYHVRKN---D-------RLAVSKMISKFTR----HG----------------LKSPFAY- 229 (355)
T ss_dssp HHTT--CSSHHHHHHHHHHHHHHHTT---C-------HHHHHHHHHHHHS----SC----------------CSCHHHH-
T ss_pred HHhc--CCCccHHHHHHHHHHHHHhh---c-------hHHHHHHHHHHhc----CC----------------CcChHHH-
Confidence 3333 34566777788777777652 1 1233444444321 10 0012211
Q ss_pred HHHHHHHHHHcCCC--cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHH
Q 001249 359 QECLDRLAIALGGN--TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRW 436 (1114)
Q Consensus 359 ~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~ 436 (1114)
...+..+......+ .....+++.+...+++.+.-+...|..++-.+..... ..+...+..+...+.++++.+|.
T Consensus 230 ~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~----~~~~~a~~~L~~fLss~d~niry 305 (355)
T 3tjz_B 230 CMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA----KELAPAVSVLQLFCSSPKAALRY 305 (355)
T ss_dssp HHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHH
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHHHcCCCchHHH
Confidence 12333232222111 2345567777778888888888888888877654221 12233445555567788899999
Q ss_pred HHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHH
Q 001249 437 AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASA 484 (1114)
Q Consensus 437 ~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~a 484 (1114)
.|+..|..+....+..+ ...-..+.+.+.| ++..++.-|...
T Consensus 306 vaLr~L~~l~~~~P~~v-----~~~n~~ie~li~d-~n~sI~t~Aitt 347 (355)
T 3tjz_B 306 AAVRTLNKVAMKHPSAV-----TACNLDLENLVTD-ANRSIATLAITT 347 (355)
T ss_dssp HHHHCC------------------------------------------
T ss_pred HHHHHHHHHHHHCcHHH-----HHHHHHHHHHccC-CcHhHHHHHHHH
Confidence 99999999887654333 3444556677788 777666555444
No 94
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.21 E-value=4.3e-05 Score=72.83 Aligned_cols=199 Identities=14% Similarity=0.172 Sum_probs=146.0
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhc
Q 001249 390 EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1114)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1114)
+|+.|.+.-.+ ..-+..+..+...+.|.++.++..++.+|+.+.+..+.......++.+++.++..+
T Consensus 18 sWkiK~a~ela-------------~~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll 84 (265)
T 3b2a_A 18 SWQILDAVSLA-------------LEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL 84 (265)
T ss_dssp TTCHHHHHHHH-------------HHCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHH-------------HhchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 59988875322 12234677888889999999999999999999998766665667899999999999
Q ss_pred cCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHH
Q 001249 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFL 549 (1114)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L 549 (1114)
.+ ++.+|.-.|..+|..++++.+.. ...+..+...+...+.+++.-.+..+...+|.+ . .....+.++..+
T Consensus 85 k~-~dEkval~A~r~L~~LLe~vpL~--~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k-----v~~~~~~V~~~l 155 (265)
T 3b2a_A 85 SQ-ENEKVTIKALRALGYLVKDVPMG--SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q-----PLEDSKLVRTYI 155 (265)
T ss_dssp CS-TTHHHHHHHHHHHHHHHTTCCBC--HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C-----BSCCCHHHHHHH
T ss_pred hc-cchhHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C-----cccchHHHHHHH
Confidence 98 89999999999999999987643 245778889999999999999999999999888 1 222456788888
Q ss_pred HHHHhhccCccchhhhHHHHHHHHHHHHHhc-hhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHH
Q 001249 550 KAILVNATDKSNRMLRAKSMECISLVGMAVG-KDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLC 621 (1114)
Q Consensus 550 ~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~-~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 621 (1114)
.+++.+ .+..+++.++.++..++..-+ ++.+.+-+.++ ..+.++ .|.++++.++.++..+.
T Consensus 156 ~sLl~S----kd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI----~elL~~---eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 156 NELVVS----PDLYTKVAGFCLFLNMLNSSADSGHLTLILDEI----PSLLQN---DNEFIVELALDVLEKAL 217 (265)
T ss_dssp HHHHTC----SSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTH----HHHHTC---SCHHHHHHHHHHHHHHT
T ss_pred HHHHhC----CChhHHHHHHHHHHHhhcccCCHHHHHHHHHHH----HHHHcC---CCHHHHHHHHHHHHHHH
Confidence 888832 245688888888888876443 12222222222 222222 34567888777666553
No 95
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.20 E-value=2.5e-07 Score=84.63 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=88.3
Q ss_pred CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhch
Q 001249 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1114)
Q Consensus 372 ~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1114)
....+.-.+.+...+++++|.+|..|+.+|+.+... . ++.+...++|+++.||..|+++|+.+..
T Consensus 7 ~~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-------~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~---- 71 (131)
T 1te4_A 7 HHHHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE-------A----FEPLLESLSNEDWRIRGAAAWIIGNFQD---- 71 (131)
T ss_dssp --------------CCSSCCCSSSSCCSSTTSCSST-------T----HHHHHHGGGCSCHHHHHHHHHHHGGGCS----
T ss_pred cccccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-------H----HHHHHHHHcCCCHHHHHHHHHHHHhcCC----
Confidence 344555667777888999999999999888866432 1 3777788999999999999999988652
Q ss_pred hHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 001249 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (1114)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~ 529 (1114)
+..++.+...+.| +++.||..|+.+|..+.. +..++.|...++++++.+|..+..+++.
T Consensus 72 -------~~a~~~L~~~L~d-~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -------ERAVEPLIKLLED-DSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHHHH-CCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2356777777888 899999999999988741 3456778888888999999999888764
No 96
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.15 E-value=6.1e-06 Score=88.61 Aligned_cols=159 Identities=11% Similarity=0.150 Sum_probs=114.8
Q ss_pred chhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChh
Q 001249 354 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPR 433 (1114)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 433 (1114)
.+..++++|..+ .+++++ ...+...+ ..+..+.|.+|++++..+..+.+- +. .++.+++.++.+|+|.+..
T Consensus 244 VRETaAQtLGaL-~hLp~e--~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL~DL----L~-~Ld~Vv~aVL~GL~D~DDD 314 (800)
T 3oc3_A 244 VRDAAAYLLSRI-YPLIGP--NDIIEQLV-GFLDSGDWQVQFSGLIALGYLKEF----VE-DKDGLCRKLVSLLSSPDED 314 (800)
T ss_dssp HHHHHHHHHHHH-TTTSCS--CCHHHHHT-TGGGCSCHHHHHHHHHHHHHTGGG----CC-CHHHHHHHHHHHTTCSSHH
T ss_pred hHHHHHHHHHHH-HhCChh--HHHHHHHH-hhcCCCCeeehhhhHHHHHHHHHH----HH-HHHHHHHHHHhhcCCcccH
Confidence 466789999999 888744 33333333 345778999999999999998222 11 2899999999999999999
Q ss_pred HHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCC-ChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHh
Q 001249 434 VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (1114)
Q Consensus 434 vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l 512 (1114)
||..|+.+|.-++ . ...++.++..+..+|.+.. -..........|+.++..-..... .+.++|.|.+.+
T Consensus 315 VRAVAAetLiPIA---~----p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~---dp~LVPRL~PFL 384 (800)
T 3oc3_A 315 IKLLSAELLCHFP---I----TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI---PPERLKDIFPCF 384 (800)
T ss_dssp HHHHHHHHHTTSC---C----SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC---CSGGGGGTGGGG
T ss_pred HHHHHHHHhhhhc---c----hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc---ChHHHHHHHhhh
Confidence 9999999998887 2 2446667777766665421 122235556667777664322112 238899999999
Q ss_pred hcCChhHHHHHHHHHHHHH
Q 001249 513 QNGKQMVQEGALTALASVA 531 (1114)
Q Consensus 513 ~~~~~~v~~~al~~l~~l~ 531 (1114)
.++-..||..++.++.++.
T Consensus 385 RHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 385 TSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp TCSSHHHHHHHHHHTTTCC
T ss_pred cCCcHHHHHHHHHHHHHHH
Confidence 9999999999999987766
No 97
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.14 E-value=3e-05 Score=81.56 Aligned_cols=154 Identities=11% Similarity=0.182 Sum_probs=121.2
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcH------HHHHHhHHHHHHHHHh-cCCCCChhHHHHHHHHHHHhHhhhc
Q 001249 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCA------KVMVKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLG 450 (1114)
Q Consensus 378 l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~------~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1114)
+.+.+...+.|.+..+...++.++..++..+. .........+++.++. ++.|..+.+|..+..++..+++...
T Consensus 56 ~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~ 135 (278)
T 4ffb_C 56 DPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT 135 (278)
T ss_dssp CTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC
Confidence 34556777889999999999999999987543 2344566778887775 5899999999999999988776543
Q ss_pred hhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc--cCchHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 001249 451 PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL--TPYLDGIVSKLLVLLQNGKQMVQEGALTALA 528 (1114)
Q Consensus 451 ~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l--~~~l~~il~~L~~~l~~~~~~v~~~al~~l~ 528 (1114)
+ ...+++.+...+.+ .+|.++..++..|..++..++...+ .+.++.+++.+.+++.+.++.||..|..+++
T Consensus 136 ~------~~~~~e~l~~~l~~-Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~ 208 (278)
T 4ffb_C 136 S------ITQSVELVIPFFEK-KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIV 208 (278)
T ss_dssp S------SHHHHHHHGGGGGC-SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHH
T ss_pred c------HHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2 34567888888988 9999999999999999988665433 3467788889999999999999999999999
Q ss_pred HHHHhhhhhh
Q 001249 529 SVADSSQEHF 538 (1114)
Q Consensus 529 ~l~~~~~~~~ 538 (1114)
.+-..+|+.+
T Consensus 209 ~ly~~~G~~~ 218 (278)
T 4ffb_C 209 EIYKVTGNNS 218 (278)
T ss_dssp HHHTC-----
T ss_pred HHHHHhCcch
Confidence 9998888643
No 98
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.99 E-value=0.042 Score=62.20 Aligned_cols=215 Identities=12% Similarity=0.153 Sum_probs=136.4
Q ss_pred HHHHHHHHHHcC-CChHHHHHHHHHHHHhhhcCchHH----HHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC
Q 001249 22 APFETLISHLMS-TSNEQRSEAELLFNLCKQQDPDSL----TLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR 95 (1114)
Q Consensus 22 ~~l~~ll~~~~s-~d~~~r~~Ae~~L~~~~~~~p~~~----~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~ 95 (1114)
+.+..+...+.+ .--+.|+.|-..|+.|.+.+|..+ +..|+.+|+. ..+.++-+.+.-.|-+.+.....
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~----- 95 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE----- 95 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-------
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc-----
Confidence 466677776654 456889999999999987677553 4667888876 45777766677777666654310
Q ss_pred CCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhh
Q 001249 96 LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG 175 (1114)
Q Consensus 96 l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~ 175 (1114)
+++.. ...+....+....++.+ .. -++-++.|+.++++.+-.+|-.++.+|..++..-+
T Consensus 96 -~~~~~----------~~~~~~~~~~~~~~d~f---~~-------~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~ 154 (651)
T 3grl_A 96 -EEVEE----------NSTRQSEDLGSQFTEIF---IK-------QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLG 154 (651)
T ss_dssp -----------------------CHHHHHHHHH---HH-------STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSH
T ss_pred -ccccc----------cccccchHHHHHHHHHH---Hc-------CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCc
Confidence 00000 01111222222222222 11 16789999999999999999999999999998877
Q ss_pred hhhhhhHH---HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHH
Q 001249 176 DTLTPHLK---HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEAL 252 (1114)
Q Consensus 176 ~~~~~~~~---~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~ 252 (1114)
+.....+- .-++.+...|.+. ...+|..++-.+..+...-.+....-.|..-++.++..+..--......+...|+
T Consensus 155 ~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL 233 (651)
T 3grl_A 155 PQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCL 233 (651)
T ss_dssp HHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHH
Confidence 65444332 4678889999997 8999999999999998753211111233344555555554311111235667788
Q ss_pred HHHHHHHccch
Q 001249 253 ELLIELAGTEP 263 (1114)
Q Consensus 253 ~~l~~l~~~~~ 263 (1114)
.++..+++..+
T Consensus 234 ~ll~nLLr~N~ 244 (651)
T 3grl_A 234 ILLQNLLKNNN 244 (651)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhcCH
Confidence 88888887653
No 99
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.98 E-value=9.1e-05 Score=78.72 Aligned_cols=289 Identities=13% Similarity=0.127 Sum_probs=141.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhh
Q 001249 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI 174 (1114)
Q Consensus 95 ~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~ 174 (1114)
.++...-..+.-..++.+.+ ++..+|+..--.+..++.. + +..=-..+.+.+-++++++-.|..|+++++.|...
T Consensus 60 ~f~~~e~t~lf~~v~kl~~s-~d~~lKrLvYLyl~~~~~~--~-~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~- 134 (355)
T 3tjz_B 60 HLGTTEATEAFFAMTKLFQS-NDPTLRRMCYLTIKEMSCI--A-EDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS- 134 (355)
T ss_dssp CCCHHHHHHHHHHHHGGGGC-CCHHHHHHHHHHHHHHTTT--S-SCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT-
T ss_pred CCchhHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhCCC--H-HHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH-
Confidence 35555555666666667776 6888998776666666553 3 22224568888888999999999999999988643
Q ss_pred hhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 001249 175 GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALEL 254 (1114)
Q Consensus 175 ~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~ 254 (1114)
+..+.+.+.+.+++.|. ++-||..|+-+...++... ++ ++..+++.+.+++.+.++-+...++.+
T Consensus 135 -----~m~~~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~-----pe----~v~~~~~~l~~ll~d~n~~V~~~Al~l 199 (355)
T 3tjz_B 135 -----TMLQAIERYMKQAIVDK-VPSVSSSALVSSLHLLKCS-----FD----VVKRWVNEAQEAASSDNIMVQYHALGL 199 (355)
T ss_dssp -----TTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTC-----HH----HHHTTHHHHHHHTTCSSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccC-----HH----HHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 24667778899999997 9999999999988777543 23 233466677777888899999899999
Q ss_pred HHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCC
Q 001249 255 LIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE 334 (1114)
Q Consensus 255 l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 334 (1114)
+.++.+..+..+. .+++.+-. ..-.++-....-+.++..++.. . .+..-..+++.+.+++....
T Consensus 200 L~ei~~~d~~a~~----kLv~~l~~---~~l~~~~~q~~llr~l~~~~~~---d------~~~~~~~~~~~l~~~L~~~~ 263 (355)
T 3tjz_B 200 LYHVRKNDRLAVS----KMISKFTR---HGLKSPFAYCMMIRVASRQLED---E------DGSRDSPLFDFIESCLRNKH 263 (355)
T ss_dssp HHHHHTTCHHHHH----HHHHHHHS---SCCSCHHHHHHHHHHHTCC--------------------------CCCCCSS
T ss_pred HHHHHhhchHHHH----HHHHHHhc---CCCcChHHHHHHHHHHHHhccc---c------chhhHHHHHHHHHHHHcCCC
Confidence 9988775433322 22322211 0001222222222222111110 0 01122334444444433211
Q ss_pred CCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHH
Q 001249 335 DDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVK 414 (1114)
Q Consensus 335 ~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~ 414 (1114)
..-.+. |..++-.+.. .+ ...+....+.+..++++++...|++|+..|..++...++.+.
T Consensus 264 ----------------~aVvyE-a~k~I~~l~~-~~-~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~- 323 (355)
T 3tjz_B 264 ----------------EMVVYE-AASAIVNLPG-CS-AKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVT- 323 (355)
T ss_dssp ----------------HHHHHH-HHHHHTC-------------CCCTHHHHHHSSSSSSHHHHHHCC-------------
T ss_pred ----------------hHHHHH-HHHHHHhccC-CC-HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHH-
Confidence 000111 2222222222 11 223333455666778889999999999999999987665433
Q ss_pred hHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 001249 415 NLEQVLSMVLNSFRDPHPRVRWAAINAI 442 (1114)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l 442 (1114)
..-.-+.++++|+|..++.-|..+|
T Consensus 324 ---~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 324 ---ACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ----------------------------
T ss_pred ---HHHHHHHHHccCCcHhHHHHHHHHh
Confidence 3344566688999988877776665
No 100
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.96 E-value=2e-05 Score=84.78 Aligned_cols=206 Identities=14% Similarity=0.172 Sum_probs=135.3
Q ss_pred CCCHHHHHHHHHHHHHhcccCCC--CcccCCCHHHHHHHHHHHHHHHh---------hchhhhHHHHHHHHHHHHHhccc
Q 001249 68 SPHPEARAMAAVLLRKLLTRDDS--FLWPRLSLHTQSSLKSMLLQSIQ---------LESAKSISKKLCDTVSELASNIL 136 (1114)
Q Consensus 68 ~~~~~~R~~A~~~Lk~~l~~~~~--~~w~~l~~~~~~~i~~~ll~~l~---------~e~~~~vr~~~~~~i~~ia~~~~ 136 (1114)
++.-++|+-||.-||.+++.++. ..+...+. .+.-.|+-.+. +.....||.++|+++|.+ .+ .
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~----DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~h-L 258 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS----KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YP-L 258 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCT----THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TT-T
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccH----HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-Hh-C
Confidence 67889999999999999988631 11112222 33334444443 125677999999999999 54 4
Q ss_pred CCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhc
Q 001249 137 PENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1114)
Q Consensus 137 ~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 216 (1114)
+.. -..+..++.....+.|++|++|+..++.+. +.+. .++.+++.+..+|+|. +.+||..|+.++..++ .
T Consensus 259 p~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~----DLL~-~Ld~Vv~aVL~GL~D~-DDDVRAVAAetLiPIA--~ 328 (800)
T 3oc3_A 259 IGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYLK----EFVE-DKDGLCRKLVSLLSSP-DEDIKLLSAELLCHFP--I 328 (800)
T ss_dssp SCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG----GGCC-CHHHHHHHHHHHTTCS-SHHHHHHHHHHHTTSC--C
T ss_pred Chh--HHHHHHHHhhcCCCCeeehhhhHHHHHHHH----HHHH-HHHHHHHHHHhhcCCc-ccHHHHHHHHHhhhhc--c
Confidence 433 455666666667889999999999999992 2222 2889999999999997 9999999999987766 1
Q ss_pred CCcchHhHHHhhHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHH
Q 001249 217 TSSADRDRFQDLLPLMMRTLTESLNNGNE--ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLA 294 (1114)
Q Consensus 217 ~~~~~~~~~~~l~p~ll~~l~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a 294 (1114)
...++.++..++.++.+.|+ ......+.+|..++...... ...+.+++.++..+. +.-.+||..+
T Consensus 329 ---------p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~PFLR--HtITSVR~AV 395 (800)
T 3oc3_A 329 ---------TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIFPCFT--SPVPEVRTSI 395 (800)
T ss_dssp ---------SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTGGGGT--CSSHHHHHHH
T ss_pred ---------hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHHhhhc--CCcHHHHHHH
Confidence 12355677777777664322 23345566777766543210 001144444444443 3467888888
Q ss_pred HHHHHHHH
Q 001249 295 IEFVITLA 302 (1114)
Q Consensus 295 ~~~l~~l~ 302 (1114)
+.++.++.
T Consensus 396 L~TL~tfL 403 (800)
T 3oc3_A 396 LNMVKNLS 403 (800)
T ss_dssp HHHTTTCC
T ss_pred HHHHHHHH
Confidence 87765543
No 101
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.84 E-value=0.00063 Score=83.27 Aligned_cols=172 Identities=9% Similarity=0.047 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHhhcHHHH-HHhHHHHHHHHHhcCCCCC-hhH
Q 001249 358 GQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVM-VKNLEQVLSMVLNSFRDPH-PRV 434 (1114)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~-~~~l~~i~~~l~~~l~d~~-~~v 434 (1114)
+..++..++...-+....+.++..+.+..+ +++| .|.+++..+..+.-...-.+ ......+...+..+|.|++ ..|
T Consensus 782 a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EV 860 (997)
T 1vsy_5 782 PVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEV 860 (997)
T ss_dssp SHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHH
Confidence 445666666443334556666666666665 6799 99999888766553211001 1233578899999999999 999
Q ss_pred HHHHHHHHHHhHhhh-chhHHhhhhhhhHHHHHhhccC-----------CCChhHHHHHHHHHHHhhhcCCccc-ccCch
Q 001249 435 RWAAINAIGQLSTDL-GPDLQNQFHPQVLPALAGAMDD-----------FQNPRVQAHAASAVLNFSENCTPEI-LTPYL 501 (1114)
Q Consensus 435 r~~a~~~l~~l~~~~-~~~~~~~~~~~il~~l~~~l~~-----------~~~~~v~~~a~~al~~l~~~~~~~~-l~~~l 501 (1114)
|..|..+|+-+.... .... ...++..+.+.+.. ......|.+|.-+|+.++...+-.. +.+++
T Consensus 861 Re~Aa~tLsgll~c~~~~~~----~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~ 936 (997)
T 1vsy_5 861 RVRAASILSDIVHNWKEEQP----LLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWI 936 (997)
T ss_dssp HHHHHHHHHHHHHSCCSHHH----HHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHH
T ss_pred HHHHHHHHHHHHHcCCchhh----HHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCccc
Confidence 999999999987654 2111 11233333332211 0111456788899999999887553 36799
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh
Q 001249 502 DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1114)
Q Consensus 502 ~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~ 535 (1114)
|.++..|.....++.+ ++..+=.+++.+-+.-.
T Consensus 937 P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~ 969 (997)
T 1vsy_5 937 PKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRA 969 (997)
T ss_dssp HHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccc
Confidence 9999888877777544 77777777777655433
No 102
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.69 E-value=0.044 Score=65.39 Aligned_cols=188 Identities=11% Similarity=0.124 Sum_probs=101.8
Q ss_pred HHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC--CchhhHHH-HHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhh--
Q 001249 107 MLLQSIQLESAKSISKKLCDTVSELASNILPEN--GWPELLPF-MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPH-- 181 (1114)
Q Consensus 107 ~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~--~w~~ll~~-l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-- 181 (1114)
.+++.|.+ +++..|..+|.+++.++...-... .-...++. +..++.+++..+|..|..+|+.++...+..+..+
T Consensus 38 Pll~~L~S-~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~ 116 (684)
T 4gmo_A 38 PVLKDLKS-PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY 116 (684)
T ss_dssp HHHHHHSS-SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 35667776 799999999999999985211100 11345554 4556888999999999999999987654432211
Q ss_pred ----HHHHHHHH---HHhhcCC------CChH-------HHHHHHHHHHHHHHhcCCcchHhHH--HhhHHHHHHHHHHH
Q 001249 182 ----LKHLHAVF---LNCLTNS------NNPD-------VKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTES 239 (1114)
Q Consensus 182 ----~~~l~~~l---~~~l~~~------~~~~-------vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~p~ll~~l~~~ 239 (1114)
+..+...+ ...+... .... +...++.++..+.+.-. .....+ ...+|.++..+...
T Consensus 117 ~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~--~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 117 RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARD--EIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHhcccHHHHHHHHHhc
Confidence 22222222 2222111 0111 11223444444443311 011111 23466666665432
Q ss_pred HhCCCHHHHHHHHHHHHHHHccchHHHHHHHH----HHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 001249 240 LNNGNEATAQEALELLIELAGTEPRFLRRQLV----DVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1114)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~----~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l 301 (1114)
.....+++..++++|..+.+..+........ .++..++..... ++..|..++..+..+
T Consensus 195 -~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~---~~~~~~la~giL~Ni 256 (684)
T 4gmo_A 195 -DIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG---TDPRAVMACGVLHNV 256 (684)
T ss_dssp -CCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS---SCTTHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC---CcHHHHHHHHHHHhH
Confidence 1234678999999999999877765543322 234444443322 223355555555544
No 103
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.60 E-value=7.5e-05 Score=67.96 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=69.9
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhh
Q 001249 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1114)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1114)
+.+...+++++|.+|..|+.+|+.+.. +..++.+...+.|+++.||..|+++|+.+.. +
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~ 103 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------E 103 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------H
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------H
Confidence 556677889999999999999998753 2346667777789999999999999998751 2
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHH
Q 001249 460 QVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1114)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~ 487 (1114)
..++.|...+++ +++.||..|+.+|..
T Consensus 104 ~a~~~L~~~l~d-~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 104 RVRAAMEKLAET-GTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHTTS-CCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHh
Confidence 467788888888 899999999998764
No 104
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.59 E-value=0.0022 Score=63.85 Aligned_cols=174 Identities=11% Similarity=0.054 Sum_probs=112.2
Q ss_pred HHHHHHhhCCCCh--hHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHh
Q 001249 379 SEQLPAYLAAPEW--QKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1114)
Q Consensus 379 ~~~l~~~l~~~~~--~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1114)
+|.+.+.+++++. ..+..|..++..++.+..+.-.... ...+|.++..|.++++.+|..|+++|..++..-...-..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3445567777777 7777788888888876543222222 245799999999999999999999999998642221111
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhh----------------cCChhH
Q 001249 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ----------------NGKQMV 519 (1114)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~----------------~~~~~v 519 (1114)
-.-...+|.|++.|.+.++..+++.|+.+|.++....... ......-++.|...+. ..+..+
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k--~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK--NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH--HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH--HHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 1234688999999974267899999999998886432211 0112233454544321 124689
Q ss_pred HHHHHHHHHHHHHhhh---hhhhhhHhhhhHHHHHHHhh
Q 001249 520 QEGALTALASVADSSQ---EHFQKYYDAVMPFLKAILVN 555 (1114)
Q Consensus 520 ~~~al~~l~~l~~~~~---~~~~~~~~~i~~~L~~~l~~ 555 (1114)
++.+..++..++.... ..+.. .+.+++.|..++..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~-~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRR-CDGLIDSLVHYVRG 205 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHT-STTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHH-CCCcHHHHHHHHHh
Confidence 9999999999976432 22222 23466666666654
No 105
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.35 E-value=0.15 Score=57.90 Aligned_cols=323 Identities=13% Similarity=0.137 Sum_probs=177.1
Q ss_pred hhHHHHHHhhcC-CChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhcCCcc
Q 001249 143 ELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSA 220 (1114)
Q Consensus 143 ~ll~~l~~~~~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~ 220 (1114)
+-++.|..-+++ .-.+-|..|+..|..+.+..+..+. ..-++.+...|+.+ .+.++-..++.++..++..-++..
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg---~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~ 97 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG---IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEE 97 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH---HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh---hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccc
Confidence 444444444443 3456677888888888776555432 22234444444433 356666677888877664322110
Q ss_pred h-------H----hHHHhhH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHH---HHHHHHHHHhcc
Q 001249 221 D-------R----DRFQDLL---PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV---DVVGSMLQIAEA 283 (1114)
Q Consensus 221 ~-------~----~~~~~l~---p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~l~~~ll~~~~~ 283 (1114)
. . ..+.+.+ +.-+..+..+++..+..+|..++++|..++...+......+- .-++.++.++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d 177 (651)
T 3grl_A 98 VEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD 177 (651)
T ss_dssp ----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC
T ss_pred ccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC
Confidence 0 0 0111111 234556677788889999999999999999988887666544 356667777753
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHH
Q 001249 284 ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLD 363 (1114)
Q Consensus 284 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~ 363 (1114)
..+.+|..++-++..+++. .+.. +++- ..+..++.++..+.... ......+..+|+.
T Consensus 178 --~rE~iRneallLL~~Lt~~---n~~i-QklV-AFEnaFe~Lf~Ii~~Eg----------------~~~Ggivv~DCL~ 234 (651)
T 3grl_A 178 --SREVIRNDGVLLLQALTRS---NGAI-QKIV-AFENAFERLLDIITEEG----------------NSDGGIVVEDCLI 234 (651)
T ss_dssp --SSHHHHHHHHHHHHHHHTT---CHHH-HHHH-HHTTHHHHHHHHHHHHT----------------GGGSHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHhcC---CHHH-HHHH-HHhccHHHHHHHHHhcC----------------CCccchhHHHHHH
Confidence 4688999999999999984 3321 1111 11345566666553211 0001124455655
Q ss_pred HHHHHcCCC----------cchHHHHHHHHHhhCCCChhHHH-----HHHHHHHHHHhhcHH---H--HHHhH--HHHHH
Q 001249 364 RLAIALGGN----------TIVPVASEQLPAYLAAPEWQKHH-----AALIALAQIAEGCAK---V--MVKNL--EQVLS 421 (1114)
Q Consensus 364 ~l~~~~~~~----------~~~~~l~~~l~~~l~~~~~~~r~-----aal~~l~~l~~~~~~---~--~~~~l--~~i~~ 421 (1114)
.+...+... ..++.+.+++..--....|..+. +++.++..+...... . ....+ ..+++
T Consensus 235 ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~ 314 (651)
T 3grl_A 235 LLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQ 314 (651)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHH
Confidence 555443211 23333333332111123465332 244445555443221 1 11111 12455
Q ss_pred HHHhcCCCC--ChhHHHHHHHHHHHhHhhhchhHHhhh----------hhhhHHHHHhhccCCCChhHHHHHHHHHHHhh
Q 001249 422 MVLNSFRDP--HPRVRWAAINAIGQLSTDLGPDLQNQF----------HPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1114)
Q Consensus 422 ~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~----------~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1114)
.+++.+..+ ...||..|+.+++.+....+. .+..+ .+.++..++..+++.....+|.+|+.++..++
T Consensus 315 ~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~-~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 315 QLCTILMATGVPADILTETINTVSEVIRGCQV-NQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH-HHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 556555443 567899999999998865422 11111 13455556666666345788999999998887
Q ss_pred hcC
Q 001249 490 ENC 492 (1114)
Q Consensus 490 ~~~ 492 (1114)
.+-
T Consensus 394 ~~N 396 (651)
T 3grl_A 394 YKN 396 (651)
T ss_dssp TTC
T ss_pred hCC
Confidence 653
No 106
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.31 E-value=0.001 Score=66.26 Aligned_cols=200 Identities=14% Similarity=0.058 Sum_probs=118.8
Q ss_pred HHHHHhcCCCCCh--hHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccc
Q 001249 420 LSMVLNSFRDPHP--RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1114)
Q Consensus 420 ~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1114)
+|.++..|+++++ .++..|++++..++..-.+.-..-.....+|.|++.|.+ +++.+|..|+++|.++.........
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5677888888877 888889899998886533322112234678999999998 8999999999999999864221100
Q ss_pred cCchHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhh----cc--------Cccchhh
Q 001249 498 TPYLDGIVSKLLVLLQ-NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN----AT--------DKSNRML 564 (1114)
Q Consensus 498 ~~~l~~il~~L~~~l~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~----~~--------~~~~~~l 564 (1114)
.=.-..-++.|+.++. +++..+++.+..++-.++...... ......-+|.|.+.+.. .. ......+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 0011235788888887 468899999999998887532211 11222345555443210 00 0113356
Q ss_pred hHHHHHHHHHHHHH--hchhhhhhh---HHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHH
Q 001249 565 RAKSMECISLVGMA--VGKDKFRDD---AKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCK 622 (1114)
Q Consensus 565 r~~a~~~l~~i~~~--~~~~~f~~~---~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 622 (1114)
+..|..|+..++.. -++..+... ++.++.++..-.. .-+.++...+-+..++.+++.
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~-~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA-DYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH-TTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh-cccchhHHHHHHHHHHHHHHh
Confidence 77778888877642 122333221 2334444333111 112344556666666666643
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.27 E-value=0.018 Score=55.92 Aligned_cols=143 Identities=10% Similarity=0.121 Sum_probs=110.7
Q ss_pred hHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh-cCCCCChhHHHHHHHHHHHhHhhhchhH
Q 001249 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1114)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1114)
.+.+++....+.+++.-.+|..|+.+|+.. . ....+++.+.. .-.|++.+||+.++.+++.++....+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p-- 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY-- 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH--
Confidence 566777788888888899999999998877 3 22567777776 66799999999999999988863333
Q ss_pred HhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHh
Q 001249 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1114)
Q Consensus 454 ~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~ 533 (1114)
+..++.+..-..| ++..||..|+..+..++.. . . .......+++.|..+..+++..||..+-..|..++..
T Consensus 138 -----e~~l~~~~~W~~d-~n~~VRR~Ase~~rpW~~~-~-~-~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 138 -----KKALPIIDEWLKS-SNLHTRRAATEGLRIWTNR-P-Y-FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -----TTTHHHHHHHHHC-SSHHHHHHHHHHTCSGGGS-T-T-TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHhcC-CCHHHHHHHHHhhHHHhcc-c-h-hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 2366777788888 8999999998887655543 1 1 3455667888888888999999999998888888776
Q ss_pred hhhh
Q 001249 534 SQEH 537 (1114)
Q Consensus 534 ~~~~ 537 (1114)
-++-
T Consensus 209 ~Pd~ 212 (240)
T 3l9t_A 209 FPDL 212 (240)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 5553
No 108
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=97.09 E-value=0.22 Score=59.30 Aligned_cols=440 Identities=10% Similarity=0.122 Sum_probs=209.8
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHH-hhhhhhhHHHHHhhccCC-CChhHHHHHHHHHHHhhhcC-
Q 001249 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENC- 492 (1114)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~- 492 (1114)
.+.++..+.+.+. + ..+..+++.+...++-... ..+....+|.++..-... .++.--......++.+++..
T Consensus 129 ~~eil~e~~p~l~-p-----~s~~~~~~~l~~fLP~~~~~~~~~~~w~~~~f~lW~~~~~s~~wd~~~~~l~~rla~~~~ 202 (799)
T 1vsy_4 129 LVDTMNFLLSSLA-P-----STMMAVMPIVTSVVPYHYHIHSKIIDYFPFCYSIWSSVSANVAIDTHMYDFVGSISKDVH 202 (799)
T ss_dssp HHHHHHHHGGGCS-T-----TTHHHHHHHHHHHSCCCCCSSCCSGGGHHHHHHHBTTBCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-c-----hhHHHHHHHHHHHcCCCCCchhhhhhhHHHHHHHHHhcccCchHHHHHHHHHHHHHHHhh
Confidence 5677777777774 3 2344555544433332110 112234455555543321 12222223333444444321
Q ss_pred ------------CcccccCc-------hHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHH
Q 001249 493 ------------TPEILTPY-------LDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 551 (1114)
Q Consensus 493 ------------~~~~l~~~-------l~~il~~L~~~l~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~ 551 (1114)
+.-...+| ++.++..++..+++.. ......|-..+.++....++.+..++..++..+..
T Consensus 203 ~~~~~~~~~~~~g~idw~~~gift~~q~~~iFt~~lr~l~~~~~~~~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~ies 282 (799)
T 1vsy_4 203 NKILSSEHEKDVVGVEFGEFGIFTDDQMTFMFNRLQGHLRTDGQIHSYSRTVKPFVYAINGSKKDRFFEKLVSLAKAIET 282 (799)
T ss_dssp HHHSSSCSCTTCCCSCCCSSTTCCHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHH
T ss_pred hhhcccccccCCCccchHhhCcccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHcCCCCchHHHHHHHHHHHHHhc
Confidence 12235788 9999999999887321 11111121111111111112345577777777777
Q ss_pred HHhhccCccchhhhHHHHHHHHHHH----HHhchhhh------------h-hhHHHHHHHHHHHhc-CCCCCCCchhhHH
Q 001249 552 ILVNATDKSNRMLRAKSMECISLVG----MAVGKDKF------------R-DDAKQVMEVLMSLQG-SQMETDDPTTSYM 613 (1114)
Q Consensus 552 ~l~~~~~~~~~~lr~~a~~~l~~i~----~~~~~~~f------------~-~~~~~i~~~l~~~~~-~~~~~~~~~~~~~ 613 (1114)
.....+.-. ..- .....+..+. +.+..|+. . .....+++.++.+.- ..+..+..+...+
T Consensus 283 y~HPSN~G~-Wt~--~L~~Fl~~L~~~f~kR~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~ 359 (799)
T 1vsy_4 283 FIHPSNNGF-WTK--PNAKFVHAFIKSYHGRVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYY 359 (799)
T ss_dssp HHSTTCCST-THH--HHHHHHHHHHHHHHHHHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred ccCCCCCCc-cHH--HHHHHHHHHHHHHHHHHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHH
Confidence 665433221 110 0111222222 11222211 1 123344444433111 1122344566778
Q ss_pred HHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCceeeecchhHHHHHHHHH
Q 001249 614 LQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACN 693 (1114)
Q Consensus 614 ~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~A~~ 693 (1114)
..++..+|..-+..-.-.+|.++..+..+++.+-- .+ -..-.+|+.
T Consensus 360 ~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l-------------------~e---------------~Hrl~~aL~ 405 (799)
T 1vsy_4 360 ISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFI-------------------NS---------------RHRIISSLK 405 (799)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTT-------------------TC---------------HHHHHHHHH
T ss_pred HHHHHHHHhcCCCccceehHHHHHHHHHHhccccc-------------------cc---------------hhHHHHHHH
Confidence 88888887765533334566666666666621000 00 012245677
Q ss_pred HHHHHHHHh--hhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHHHHH------------------------
Q 001249 694 MLCCYADEL--KEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLA------------------------ 747 (1114)
Q Consensus 694 ~l~~~~~~~--~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~~~~------------------------ 747 (1114)
+|..++..+ +..+.+|+..++..+++.++-. +..--..+...+..++..+...
T Consensus 406 ~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~N-D~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~ 484 (799)
T 1vsy_4 406 QFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMN-DTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFY 484 (799)
T ss_dssp HHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSS-CHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHhccCCcc-cHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhh
Confidence 888887765 3457889999999999998742 3333344555555554321100
Q ss_pred -HHcC--CC---CCCC---------HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 001249 748 -IEKG--LA---PGRN---------ESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIV 812 (1114)
Q Consensus 748 -~~~~--~~---~~~~---------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 812 (1114)
.+.+ .. .... .......+..++.+++..++...+..+... +..++..+-..++++..+.++
T Consensus 485 ~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~----l~~~~~~l~~~lS~~if~~~l 560 (799)
T 1vsy_4 485 HIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTK----INQTTMILQESMDDKIFNYFA 560 (799)
T ss_dssp HHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHH----HHHHHHHHHHTBCHHHHHHHH
T ss_pred hhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHH----HHHHHHHHHHhCCHHHHHHHH
Confidence 0000 00 0000 011334555566666666655444444432 222222222234566666666
Q ss_pred HHHHHHHHHHHhhHHHHHHhhcCCCCChHhhhhhhhhhHhHHHHHHHHHHH----HHHHHHHhhhchhhhHHHHHHhHhh
Q 001249 813 DEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEI----LGTLIKTFKAAFLPFFDELSSYLTP 888 (1114)
Q Consensus 813 ~~l~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~e~~~~~~~~~~~~~~~----l~~l~~~~~~~~~~~~~~l~~~l~~ 888 (1114)
+.+...+...... .. ...++.+ ++++++..|..+..++..+...+..
T Consensus 561 ~k~~~fv~~n~~~----------~a-------------------~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~ 611 (799)
T 1vsy_4 561 SLLNRNFWSNDSF----------KE-------------------KDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKE 611 (799)
T ss_dssp HHHHHHHHSCSCC----------CS-------------------SSCCTHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh----------hH-------------------HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 6655544432110 00 0114455 6788888777322222222222222
Q ss_pred hhcCC-----------CCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhc
Q 001249 889 MWGKD-----------KTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAC 932 (1114)
Q Consensus 889 ~l~~~-----------~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l 932 (1114)
.+..+ +.+..-.+-+.+++.++.+.|..+.+|.++++..+-..+
T Consensus 612 ~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~ 666 (799)
T 1vsy_4 612 QIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLY 666 (799)
T ss_dssp HHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHH
T ss_pred HHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHH
Confidence 11111 122334567899999999999999999999988776554
No 109
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.42 E-value=0.25 Score=48.05 Aligned_cols=167 Identities=13% Similarity=0.100 Sum_probs=111.4
Q ss_pred HHHHHHHHcCCCh---HHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHH
Q 001249 24 FETLISHLMSTSN---EQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (1114)
Q Consensus 24 l~~ll~~~~s~d~---~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~ 100 (1114)
+.++++.+..-.+ .+-+.|...++.+. .+. +..+.+-|.++..-++|..|+-+|.+. . . ..+.
T Consensus 39 ~~~~~~~~~~~~~gf~~~~~~a~~~~~~~~---~~~-~~~la~~L~~~~~deVR~~Av~lLg~~-~-~--------~~~~ 104 (240)
T 3l9t_A 39 VARLEKDFSLIEHGFKEEEQRALTDYKSND---GEY-IKKLAFLAYQSDVYQVRMYAVFLFGYL-S-K--------DKEI 104 (240)
T ss_dssp HHHHHHHHTC-----CHHHHHHHHHHHHSC---HHH-HHHHHHHHHTCSSHHHHHHHHHHHHHT-T-T--------SHHH
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhCC---HHH-HHHHHHHHHhCcchHHHHHHHHHHHhc-c-C--------cHHH
Confidence 3344555443233 33444444444432 233 456666676666679999999988875 2 1 1333
Q ss_pred HHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhh
Q 001249 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (1114)
Q Consensus 101 ~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 180 (1114)
...++ ..+..+....||..++.+++.++....| ...++.+..+..+++..+|..|...+...+.. ..+..
T Consensus 105 L~~ir----~~va~D~~WrVre~lA~a~~~~~~~~~p----e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k~ 174 (240)
T 3l9t_A 105 LIFMR----DEVSKDNNWRVQEVLAKAFDEFCKKIEY----KKALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFKE 174 (240)
T ss_dssp HHHHH----HTGGGCSCHHHHHHHHHHHHHHHHHHCT----TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTTT
T ss_pred HHHHH----HHhCCCCCccHHHHHHHHHHHHHHhcCH----HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhhc
Confidence 33332 2244457889999999999999863333 13788899999999999999998887654432 23444
Q ss_pred hHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001249 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1114)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1114)
....+++.+.....|+ +.-||.+....|..+...
T Consensus 175 dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 175 NPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKK 208 (240)
T ss_dssp CHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhh
Confidence 5677888998888887 999999999988887765
No 110
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=95.97 E-value=1.3 Score=52.70 Aligned_cols=302 Identities=10% Similarity=0.057 Sum_probs=164.5
Q ss_pred HHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccC--CCChhHHHHHHHHHHHhh
Q 001249 412 MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD--FQNPRVQAHAASAVLNFS 489 (1114)
Q Consensus 412 ~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~--~~~~~v~~~a~~al~~l~ 489 (1114)
....+..+.|.+..++.+.+..+...+..++..++.--+..- .-.++.++..+...|.. -..+.-..+++.+|..++
T Consensus 333 ~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~-~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 333 HEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNA-YLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTH-HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcc-ceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 345667788999999999999999999999999986443111 12356666666666554 233443455666666655
Q ss_pred hcCC-cccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh--------------------------------
Q 001249 490 ENCT-PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE-------------------------------- 536 (1114)
Q Consensus 490 ~~~~-~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~-------------------------------- 536 (1114)
..+- .....+|+..++..++..++..++.--..++..+.+++..++-
T Consensus 412 r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (799)
T 1vsy_4 412 RFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGES 491 (799)
T ss_dssp HHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCC
T ss_pred HHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccc
Confidence 4322 1234578888888888888877776666777777777653320
Q ss_pred --------------------hhhhhHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHH
Q 001249 537 --------------------HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 596 (1114)
Q Consensus 537 --------------------~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~ 596 (1114)
.|..+...++..+..++.+. .+.. +-.....++..+...+.++.|...+..+.+++.
T Consensus 492 ~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~--~Ee~-l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~ 568 (799)
T 1vsy_4 492 SKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVD--LEDS-LVTKINQTTMILQESMDDKIFNYFASLLNRNFW 568 (799)
T ss_dssp SSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSC--CCTH-HHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC--chHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 13334444555555555442 1211 212234455556666666666666666666654
Q ss_pred HHhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchhhcCCc
Q 001249 597 SLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDK 676 (1114)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1114)
..... ...+.+..-+.--+..++.+-++.+..++|.+...+...+....+. .+. ..+....|.
T Consensus 569 ~n~~~--~a~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~~i~~ga~s-~rs------~~e~~~~D~-------- 631 (799)
T 1vsy_4 569 SNDSF--KEKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGAGS-VRS------TSEIQQRDV-------- 631 (799)
T ss_dssp SCSCC--CSSSCCTHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTTTC-SCC------SSSCCTTTH--------
T ss_pred Hhhhh--hHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhccccc-ccc------ccccCcchH--------
Confidence 41110 1112221111000334555544434444444444443222111000 000 000000000
Q ss_pred eeeecchhHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHHHH
Q 001249 677 RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 744 (1114)
Q Consensus 677 ~~~v~~~~~~~k~~A~~~l~~~~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~~~ 744 (1114)
+-.--+.+|+.+..+.|..+.+|-+++++.+-.++....+..+-+.++..+.+++...
T Consensus 632 ----------~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~sL 689 (799)
T 1vsy_4 632 ----------KLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYDNVTNPPLDVITSIVIHSALATL 689 (799)
T ss_dssp ----------HHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh
Confidence 0112355788888888999999999998887766643334444466777777666554
No 111
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.93 E-value=0.7 Score=49.90 Aligned_cols=124 Identities=13% Similarity=0.065 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhH
Q 001249 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRV 434 (1114)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~v 434 (1114)
...|++.+.++...++ .+-...+..+..+..+.+..+|..|+..|..++.. .+++.+...+.+.|+..++.-
T Consensus 45 K~LaaQ~I~kffk~FP--~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~~E 116 (507)
T 3u0r_A 45 KRLAAQFIPKFFKHFP--ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDSAE 116 (507)
T ss_dssp HHHHHHHHHHHGGGCG--GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccchHH
Confidence 4567788888887775 56666777777888899999999999888888765 578899999999999999888
Q ss_pred HHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcc
Q 001249 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1114)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1114)
+...-++|-.+...-+ ...+..++..+.. ++..+|+.+...|..-+..++.+
T Consensus 117 ~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~ 168 (507)
T 3u0r_A 117 FNLVNNALLSIFKMDA--------KGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDE 168 (507)
T ss_dssp HHHHHHHHHHHHHHCH--------HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHHHHHHHhcCh--------HHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchh
Confidence 8888888877664322 2334444444443 45788888888887665555443
No 112
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.71 E-value=2.7 Score=44.75 Aligned_cols=176 Identities=13% Similarity=0.133 Sum_probs=113.7
Q ss_pred CCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh---
Q 001249 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC--- 215 (1114)
Q Consensus 139 ~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~--- 215 (1114)
.-.+++++.+++...+++..+|......+...+..-. ++...+++.+...+++. ++.|.+.++.+..++...
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~----el~~~~l~~L~~LL~d~-d~~V~K~~I~~~tslYpl~f~ 133 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDI----ELLLKLIANLNMLLRDE-NVNVVKKAILTMTQLYKVALQ 133 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999989999999999999988886432 24677777888888886 899999999888877643
Q ss_pred -c-CCcchH---hHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccc----------------------------
Q 001249 216 -L-TSSADR---DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE---------------------------- 262 (1114)
Q Consensus 216 -~-~~~~~~---~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~---------------------------- 262 (1114)
+ .+.... +..-..+..+-..+.....+.+..++..++..+..++-..
T Consensus 134 ~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~ 213 (386)
T 3o2t_A 134 WMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPY 213 (386)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSS
T ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCc
Confidence 1 111100 1111122223333444456778889998888877655211
Q ss_pred --hHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHh
Q 001249 263 --PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSM 329 (1114)
Q Consensus 263 --~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 329 (1114)
+..+..--..+++.++..+.....+.-.-..++.++..+++. . +.|...+++.+..+
T Consensus 214 L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~---R-------P~~~~rIl~aL~~l 272 (386)
T 3o2t_A 214 IQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQ---R-------PMFMSEVIQAYETL 272 (386)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHH---S-------GGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHh---c-------HHHHHHHHHHHHhh
Confidence 123344455778888887765444444455667777777772 2 35677778777654
No 113
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.65 E-value=0.39 Score=45.51 Aligned_cols=128 Identities=16% Similarity=0.290 Sum_probs=84.3
Q ss_pred HHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccC-----CCChhHHHHHHHHH
Q 001249 411 VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD-----FQNPRVQAHAASAV 485 (1114)
Q Consensus 411 ~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~-----~~~~~v~~~a~~al 485 (1114)
....+++.+...+.. ..|.+|+..|.. .+-+.+++|.+...+.+ ..+...-.......
T Consensus 8 Elq~yf~~It~a~~~-------~~r~~aL~sL~~----------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~ 70 (196)
T 4atg_A 8 ELQLYFDKILSMIKS-------DMKDIAIECLEK----------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALY 70 (196)
T ss_dssp HHHHHHHHHHHHHTS-------TTHHHHHHHHHH----------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-------HHHHHHHHHHhc----------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 344566777776665 458888777744 12234455554443322 02344445556666
Q ss_pred HHhhhcCCcccccCchHHHHHHHHHHhhcC---ChhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHHHhhc
Q 001249 486 LNFSENCTPEILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (1114)
Q Consensus 486 ~~l~~~~~~~~l~~~l~~il~~L~~~l~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~l~~~ 556 (1114)
..++.+-. -.+.||+..++|.++.++=.. ...+|+.|...++.++...+.......++++..+.+.+.++
T Consensus 71 ~ALl~N~~-l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp 143 (196)
T 4atg_A 71 FSLIKNKH-VFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDP 143 (196)
T ss_dssp HHHHHCTT-CCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCT
T ss_pred HHHHcCCC-CChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCC
Confidence 66777644 357899999999999987442 23799999999999999988765555567777777777553
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.54 E-value=2.3 Score=42.66 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=105.8
Q ss_pred CCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh---
Q 001249 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC--- 215 (1114)
Q Consensus 139 ~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~--- 215 (1114)
.-+|++++.+++...+++..+|......+...+..-. .+...+++.+...++++ ++.|.+.++.+...+...
T Consensus 49 ~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~-d~~V~K~~I~~~~~iY~~~l~ 123 (257)
T 3gs3_A 49 ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDN-SAQVIKRVIQACGSIYKNGLQ 123 (257)
T ss_dssp GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999888778888999999999988885432 35677778888888886 899999999988887654
Q ss_pred -cCC-cch---HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc--cc-------------------------h
Q 001249 216 -LTS-SAD---RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG--TE-------------------------P 263 (1114)
Q Consensus 216 -~~~-~~~---~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~--~~-------------------------~ 263 (1114)
+.. ... .+..-..+..+=..+.....+.+..++..+++.+..++- +. +
T Consensus 124 ~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~ 203 (257)
T 3gs3_A 124 YLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRR 203 (257)
T ss_dssp HHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCH
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCH
Confidence 211 110 111112222233334444567788999999888877652 11 1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHH
Q 001249 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1114)
Q Consensus 264 ~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1114)
..+..--..+++.++.....++.+...-..++..+..+++
T Consensus 204 ~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak 243 (257)
T 3gs3_A 204 EKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAK 243 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH
Confidence 3344445567777777665544445455677788888887
No 115
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.08 E-value=0.47 Score=44.95 Aligned_cols=130 Identities=20% Similarity=0.212 Sum_probs=86.1
Q ss_pred HHHHHHHHhh-hchhhhHHHH-HHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhccCC---Ch
Q 001249 863 ILGTLIKTFK-AAFLPFFDEL-SSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDE---NQ 937 (1114)
Q Consensus 863 ~l~~l~~~~~-~~~~~~~~~l-~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~---~~ 937 (1114)
++..+...-| ....|||-.+ ...+...+ .+...-...+.+...++.+-.-...+|+++++|.++.|+-.. ..
T Consensus 28 aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl---~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~ 104 (196)
T 4atg_A 28 AIECLEKESGLQQLVPYFIQHISELILKSF---KEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD 104 (196)
T ss_dssp HHHHHHHCSSCTTTHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCH
T ss_pred HHHHHhcCCChhhhHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHH
Confidence 3444444434 3356666552 22222222 133444455677777777766667889999999999997542 23
Q ss_pred hHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHHHHHh
Q 001249 938 DVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQ 999 (1114)
Q Consensus 938 ~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~ 999 (1114)
.+|.-|+..++.++...+......-+.+...+.+.+.++.. .....-.|+.++..+..
T Consensus 105 ~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~----~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 105 DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNR----SEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTS----CHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCC----ChHHHHHHHHHHHHhHH
Confidence 79999999999999998876666677888999999887642 24555556666655543
No 116
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.81 E-value=4.3 Score=41.81 Aligned_cols=181 Identities=10% Similarity=0.114 Sum_probs=114.8
Q ss_pred hhhhHHHHHHHHHHHHHhcccCC--------CCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhh--hhhhhhhhHHHH
Q 001249 116 SAKSISKKLCDTVSELASNILPE--------NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY--IGDTLTPHLKHL 185 (1114)
Q Consensus 116 ~~~~vr~~~~~~i~~ia~~~~~~--------~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~--~~~~~~~~~~~l 185 (1114)
-+.+.|+.++.+++.+.+..... ..+|+++..|+....+++...-.|. +|...+++ +...+- ....
T Consensus 90 L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~--mLRecir~e~la~~iL--~~~~ 165 (341)
T 1upk_A 90 IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIRHEPLAKIIL--WSEQ 165 (341)
T ss_dssp SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHTSHHHHHHHH--HSGG
T ss_pred CCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH--HHHHHHHhHHHHHHHh--ccHH
Confidence 35556666666666666543221 1368999999999887776443332 23333322 111000 0011
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc--ch
Q 001249 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT--EP 263 (1114)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~--~~ 263 (1114)
+-.|.+....+ +-+|-..|+.++..++..-. ....+-+......+......++++++--.+..++.+|+++.-. ..
T Consensus 166 f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk-~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~ 243 (341)
T 1upk_A 166 FYDFFRYVEMS-TFDIASDAFATFKDLLTRHK-LLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNF 243 (341)
T ss_dssp GGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGH
T ss_pred HHHHHHHhcCC-CchHHHHHHHHHHHHHhccH-HHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHH
Confidence 12334566776 88898889888888776421 1122334455666777777788888999999999999998864 56
Q ss_pred HHHHHHHH--HHHHHHHHHhccCCcchhHHHHHHHHHHHHHHh
Q 001249 264 RFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1114)
Q Consensus 264 ~~~~~~~~--~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1114)
..+..|+. .-+..++.++. +.+..++..|+.++..++-+
T Consensus 244 ~vM~~Yis~~~nLkl~M~LL~--d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 244 TIMTKYISKPENLKLMMNLLR--DKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHTTCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHHhc--CchhchhhhhhhheeeeeeC
Confidence 67777765 45666677775 45788999999999988874
No 117
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=94.03 E-value=2.4 Score=43.69 Aligned_cols=144 Identities=13% Similarity=0.283 Sum_probs=92.6
Q ss_pred HHhHHHHHHHHHhcCCCCChhHHHH-HHHHHHHhHhhhchhHHhhhhhhhHHHHH----hhccC--CCChhHHHHHHHHH
Q 001249 413 VKNLEQVLSMVLNSFRDPHPRVRWA-AINAIGQLSTDLGPDLQNQFHPQVLPALA----GAMDD--FQNPRVQAHAASAV 485 (1114)
Q Consensus 413 ~~~l~~i~~~l~~~l~d~~~~vr~~-a~~~l~~l~~~~~~~~~~~~~~~il~~l~----~~l~~--~~~~~v~~~a~~al 485 (1114)
...++.++..++.--+...|..|.. .+.+++.++..++..+ .++.+.++..++ ..+++ ...|+.|..=...|
T Consensus 68 ~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i-~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL 146 (321)
T 1w9c_A 68 ENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHI-TAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLL 146 (321)
T ss_dssp HHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGG-GGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHH
Confidence 3456677766655545555555542 3445555555555544 455555555554 44443 14789999988999
Q ss_pred HHhhhcCCcccc---cCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhh--hh-----hhhHhhhhHHHHHHHhh
Q 001249 486 LNFSENCTPEIL---TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE--HF-----QKYYDAVMPFLKAILVN 555 (1114)
Q Consensus 486 ~~l~~~~~~~~l---~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~--~~-----~~~~~~i~~~L~~~l~~ 555 (1114)
..+...|-+..+ .+.+..++..+.-.++++.+.+.+.++.++-.+...+.. .+ ..|+-.++..+...+.+
T Consensus 147 ~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTD 226 (321)
T 1w9c_A 147 QAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTD 226 (321)
T ss_dssp HHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888887654322 135677888888899999999999999999887776642 22 24566666666666655
Q ss_pred cc
Q 001249 556 AT 557 (1114)
Q Consensus 556 ~~ 557 (1114)
..
T Consensus 227 s~ 228 (321)
T 1w9c_A 227 TS 228 (321)
T ss_dssp SS
T ss_pred ch
Confidence 43
No 118
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.96 E-value=8.2 Score=38.59 Aligned_cols=155 Identities=10% Similarity=0.072 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhh-hcCchHH---HHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCC
Q 001249 22 APFETLISHLMSTSNEQRSEAELLFNLCK-QQDPDSL---TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1114)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~-~~~p~~~---~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~ 97 (1114)
+++..+|.......++.+-..-.+.+++. ..+|..+ +..++++ ..+.+.++|+..+-.+.....++
T Consensus 15 ~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~-~~~~~~~vrk~~~~Fi~e~~~~k--------- 84 (257)
T 3gs3_A 15 AKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSL-AHDSNMEVRKQVVAFVEQVCKVK--------- 84 (257)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGG-GGCSCHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHH---------
Confidence 56777777776644455555555555522 2255432 3333332 24567888888887777666543
Q ss_pred HHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhc-CCChhhHHHHHHHHHHhhhhhhh
Q 001249 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVS-SDSVKLQESAFLIFAQLSQYIGD 176 (1114)
Q Consensus 98 ~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~-~~~~~~r~~al~~l~~l~~~~~~ 176 (1114)
++....+...|...+.+ .++.|.+.+..+.+.+.+ .+++++. +++... -. +
T Consensus 85 ~~l~~~~l~~L~~Ll~d-~d~~V~K~~I~~~~~iY~-------------~~l~~i~~~~~~~~----------~~----~ 136 (257)
T 3gs3_A 85 VELLPHVINVVSMLLRD-NSAQVIKRVIQACGSIYK-------------NGLQYLCSLMEPGD----------SA----E 136 (257)
T ss_dssp GGGHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHH-------------HHHHHHTTSSSCCH----------HH----H
T ss_pred HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHH-------------HHHHHHhcCCCCcc----------hH----H
Confidence 33444444555555554 466666666555554432 2333322 221100 00 1
Q ss_pred hhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001249 177 TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1114)
Q Consensus 177 ~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1114)
..-..+..+-..+++.+.+. +..||..+++.+..++-.
T Consensus 137 ~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 137 QAWNILSLIKAQILDMIDNE-NDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccC-CcchHHHHHHHHHHHHHh
Confidence 11223344444555556665 899999999999988854
No 119
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=92.88 E-value=13 Score=40.61 Aligned_cols=355 Identities=14% Similarity=0.179 Sum_probs=164.5
Q ss_pred CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHH-------HHHHHHHHHHhhchhhhHHHHHH
Q 001249 53 DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQS-------SLKSMLLQSIQLESAKSISKKLC 125 (1114)
Q Consensus 53 ~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~-------~i~~~ll~~l~~e~~~~vr~~~~ 125 (1114)
++. +...++++|....+.++.|+..+++--++.... +.+.... ..+ .++.......+.....+++
T Consensus 75 ~~~-~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~------~~~~~~~~f~~~~~~~~-~l~~~~~~~dd~~~ll~a~ 146 (480)
T 1ho8_A 75 NGK-TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDK------YGDDTVKFFQEDPKQLE-QLFDVSLKGDFQTVLISGF 146 (480)
T ss_dssp SST-THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSS------SSHHHHHHHHHCTTHHH-HHHHHCSCSSHHHHHHHHH
T ss_pred Cch-HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCc------chHHHHHHHhhCcccch-HHHHHHhcccchHHHHHHH
Confidence 443 457799999988899999999999999887641 1111111 111 1333322323444555666
Q ss_pred HHHHHHHhcccCC-CCchhhHH--HHHHhhcCC-ChhhHHHHHHHHHHhhhh--hhhhhhh----hHHHHHHHHHHhhcC
Q 001249 126 DTVSELASNILPE-NGWPELLP--FMFQCVSSD-SVKLQESAFLIFAQLSQY--IGDTLTP----HLKHLHAVFLNCLTN 195 (1114)
Q Consensus 126 ~~i~~ia~~~~~~-~~w~~ll~--~l~~~~~~~-~~~~r~~al~~l~~l~~~--~~~~~~~----~~~~l~~~l~~~l~~ 195 (1114)
.+++.++....+. +..+.++. .+...+.+. +...+..+..+|..+... ....+.. .++.++.++...+.+
T Consensus 147 ~l~~ll~~~~~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~ 226 (480)
T 1ho8_A 147 NVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDS 226 (480)
T ss_dssp HHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhccCCccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcc
Confidence 6666664321110 01123333 333444442 344566788888877653 1122221 233344333444322
Q ss_pred C------------CChHHHHHHHHHHHHHHHhcCCcchHhHHH-h---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 001249 196 S------------NNPDVKIAALNAVINFIQCLTSSADRDRFQ-D---LLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1114)
Q Consensus 196 ~------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~---l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~ 259 (1114)
. ...++.+.++-|+ +.-.+... ..+.+. . .++.++..+.. +..+.+..-++.+|..++
T Consensus 227 ~~~~~~~~~~~~~~~~Ql~Y~~ll~i--WlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~---s~KEKvvRv~la~l~Nll 300 (480)
T 1ho8_A 227 QLATRIVATNSNHLGIQLQYHSLLLI--WLLTFNPV-FANELVQKYLSDFLDLLKLVKI---TIKEKVSRLCISIILQCC 300 (480)
T ss_dssp ------------CCHHHHHHHHHHHH--HHHTTSHH-HHHHHHTTSHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHTT
T ss_pred ccccccccccCCCccHHHHHHHHHHH--HHHHcCHH-HHHHHHhcchHHHHHHHHHHHh---hccchhHHHHHHHHHHHh
Confidence 1 0123333433333 22223211 111121 1 22333333332 456788888888888888
Q ss_pred ccch----HHHHHHH--HHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcCC
Q 001249 260 GTEP----RFLRRQL--VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDI 333 (1114)
Q Consensus 260 ~~~~----~~~~~~~--~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 333 (1114)
+..+ ......+ ....+.+-.+...+-.|+++. ..++++....+.. -.....+..|...+..-.+.|---.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~-edl~~L~e~L~~~---~~~ltsfDeY~~El~sG~L~WSP~H 376 (480)
T 1ho8_A 301 STRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELR-QDISNLKEILENE---YQELTSFDEYVAELDSKLLCWSPPH 376 (480)
T ss_dssp SSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHH-HHHHHHHHHHHHH---HHTCCHHHHHHHHHHHTCCCCCGGG
T ss_pred cccchhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHH-HHHHHHHHHHHHH---HHhcccHHHHHHHHhcCCcccCCCc
Confidence 7652 2222221 122232222223333445544 3445555544421 0001112233333333221110000
Q ss_pred CCCcccccCCCCCccccCCCchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhh------CCCChhHHHHHHHHHHHHHhh
Q 001249 334 EDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL------AAPEWQKHHAALIALAQIAEG 407 (1114)
Q Consensus 334 ~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~~~~~~~r~aal~~l~~l~~~ 407 (1114)
.++.-|.+.-.--+| ..+ .++..+...+...- .+.++.+-..|+.=+|.++..
T Consensus 377 ~se~FW~ENa~kf~e----~~~-----------------~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~ 435 (480)
T 1ho8_A 377 VDNGFWSDNIDEFKK----DNY-----------------KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL 435 (480)
T ss_dssp GCHHHHHHHSGGGSS----GGG-----------------HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHh----cch-----------------HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH
Confidence 011113211100000 011 12222333332211 023566777888888888887
Q ss_pred cHHH--HHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHh
Q 001249 408 CAKV--MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1114)
Q Consensus 408 ~~~~--~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1114)
.|.. +...+ ..-..++..+.++++.||+.|+.|++.+..
T Consensus 436 ~P~gr~i~~~l-g~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 436 LPESIDVLDKT-GGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp CTTHHHHHHHH-SHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6632 11111 235678889999999999999999988753
No 120
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=92.37 E-value=3.6 Score=42.34 Aligned_cols=191 Identities=10% Similarity=0.144 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHH-HHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHH
Q 001249 517 QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA-ILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVL 595 (1114)
Q Consensus 517 ~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~-~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l 595 (1114)
+.+|+..+..+.+.++...+ ..--...++|.|.+ ++.+..+.....--...+.+++.+...+| +.+.|+++.|++.+
T Consensus 43 R~vKkeiLkLiet~i~~~~d-~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~-~~i~~~vp~Il~~V 120 (321)
T 1w9c_A 43 RTVKRETLKLISGWVSRSND-PQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLG-GHITAEIPQIFDAV 120 (321)
T ss_dssp HHHHHHHHHHHHHHHTTCSC-HHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHG-GGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHH-HHhhhhHHHHHHHH
Confidence 45677888888887765532 11123444555543 22221111011112356889999999998 77999998888765
Q ss_pred HH----HhcCCCCCCCchhhHHHHHHHHHHHHhccCCccchhhhhHHHHHhccCCCCccccCCCCcccccCCCCcccchh
Q 001249 596 MS----LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETI 671 (1114)
Q Consensus 596 ~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1114)
.. +.+..+++....|..-++.+..+...+=..+-.+=+.....+++++-
T Consensus 121 Fe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsii--------------------------- 173 (321)
T 1w9c_A 121 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSII--------------------------- 173 (321)
T ss_dssp HHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH---------------------------
Confidence 43 44545554445777777777777765433333332333333333321
Q ss_pred hcCCceeeecchhHHHHHHHHHHHHHHHHHhhh-------hccccHHHHHHHhhhcccccCCHHHHHHHHHhHHHHHH
Q 001249 672 TLGDKRIGIKTSVLEEKATACNMLCCYADELKE-------GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLR 742 (1114)
Q Consensus 672 ~~~~~~~~v~~~~~~~k~~A~~~l~~~~~~~~~-------~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~al~~l~~ 742 (1114)
|+.+...-+-.+.++..+..+..+... -+..|.-.++..++..++|..|..-=+.-+..|..++.
T Consensus 174 ------Wa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~ 245 (321)
T 1w9c_A 174 ------WAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFN 245 (321)
T ss_dssp ------HHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred ------HHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHH
Confidence 111111111223455566666555431 13456667777777777776655433334444454444
No 121
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=90.62 E-value=22 Score=38.67 Aligned_cols=93 Identities=12% Similarity=0.167 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHh---
Q 001249 205 ALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIA--- 281 (1114)
Q Consensus 205 a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~--- 281 (1114)
-+.-+..+++.+ ....|...+..+.+.+..++.+.+..+...|+..|..- ..-..+..+...+++.++..+
T Consensus 304 FL~eleeile~~----~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~--~i~~li~~n~~~IlPii~p~L~~~ 377 (449)
T 2npp_B 304 FLNELEEILDVI----EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNE--YIMSLISDNAAKILPIMFPSLYRN 377 (449)
T ss_dssp HHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCH--HHHHHHHTTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCH--HHHHHHHhchhhhHHhhHHHHHHH
Confidence 344444455444 45567888888999999999999999999988776421 111233444445556555433
Q ss_pred ccCCcchhHHHHHHHHHHHHHH
Q 001249 282 EAESLEEGTRHLAIEFVITLAE 303 (1114)
Q Consensus 282 ~~~~~~~~vr~~a~~~l~~l~~ 303 (1114)
...+.+..+|..+..++..+.+
T Consensus 378 s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 378 SKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp TTCCSSTTHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHH
Confidence 2346788899999998887777
No 122
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=90.45 E-value=22 Score=38.53 Aligned_cols=298 Identities=12% Similarity=0.136 Sum_probs=162.8
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHH
Q 001249 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPF 147 (1114)
Q Consensus 68 ~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~ 147 (1114)
..++..+++|+..+.+..+. + ++..+.-.+.++....+ .+..||..+...+-.+++. ...+.+...
T Consensus 39 kg~~k~K~LaaQ~I~kffk~-----F----P~l~~~Ai~a~lDLcED-ed~~IR~qaik~Lp~~ck~----~~i~kiaDv 104 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKH-----F----PELADSAINAQLDLCED-EDVSIRRQAIKELPQFATG----ENLPRVADI 104 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGG-----C----GGGHHHHHHHHHHHHTC-SSHHHHHHHHHHGGGGCCT----TCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhh-----C----hhhHHHHHHHHHHHHhc-ccHHHHHHHHHhhHHHhhh----hhhhhHHHH
Confidence 55799999999999998765 3 33444444667777776 5888999888777777653 334788999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHh
Q 001249 148 MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (1114)
Q Consensus 148 l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 227 (1114)
|.|+++..++..+...=..|-.+....+.. .+-.+|.+..+ + +..+|..+++.|..-+..+....-.. +
T Consensus 105 L~QlLqtdd~~E~~~V~~sL~sllk~Dpk~------tl~~lf~~i~~-~-~e~~Rer~lkFi~~kl~~l~~~~l~~---E 173 (507)
T 3u0r_A 105 LTQLLQTDDSAEFNLVNNALLSIFKMDAKG------TLGGLFSQILQ-G-EDIVRERAIKFLSTKLKTLPDEVLTK---E 173 (507)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHCHHH------HHHHHHHHHHH-S-CHHHHHHHHHHHHHHGGGSCTTTSCH---H
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhcChHH------HHHHHHHHHcc-c-chHHHHHHHHHHHHHHhhcchhhccH---H
Confidence 999999888877666666666665543322 22223333333 3 67999999888877666554321111 1
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccC----CcchhHHHHHHHHHHHHHH
Q 001249 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAE----SLEEGTRHLAIEFVITLAE 303 (1114)
Q Consensus 228 l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~----~~~~~vr~~a~~~l~~l~~ 303 (1114)
.-..+...+...+++-..+.....+.+|..+- .... . ....++++++...+... ..|.+.-..-+.|+.....
T Consensus 174 ~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lk-l~~t-~-~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP 250 (507)
T 3u0r_A 174 VEELILTESKKVLEDVTGEEFVLFMKILSGLK-SLQT-V-SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVP 250 (507)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSG-GGSS-H-HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhcc-cccC-c-hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHH
Confidence 12245555566666656666665565553321 1111 1 23356777666654321 1233333333444433322
Q ss_pred hhhccchhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCchhhHHHHHHHHH---HHcCCC----cchH
Q 001249 304 ARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA---IALGGN----TIVP 376 (1114)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~---~~~~~~----~~~~ 376 (1114)
...+.. ....|+.-+...+++.+....+. ++++ + + -...|..++ ...|.- ..++
T Consensus 251 ~FS~~v----~StkFv~y~~~kIlP~l~~L~e~--------~~~~--~---~--kL~LLK~lAE~s~~~~~~e~a~~~l~ 311 (507)
T 3u0r_A 251 LFSKNV----HSTRFVTYFCEQVLPNLGTLTTP--------VEGL--D---I--QLEVLKLLAEMSSFCGDMEKLETNLR 311 (507)
T ss_dssp GCBTTB----CCHHHHHHHHHHTGGGTTCCCCC----------CC--C---H--HHHHHHHHHHHHTTCCCCTTHHHHHH
T ss_pred HhccCC----ChHHHHHHHHHhhccchhhcccc--------ccch--H---H--HHHHHHHHHHHccCCCccchHHHHHH
Confidence 111111 12234444444443333222110 0000 0 1 123444444 444421 2455
Q ss_pred HHHHHHHHhhC---C------------C--ChhHHHHHHHHHHHHHhhcHHHH
Q 001249 377 VASEQLPAYLA---A------------P--EWQKHHAALIALAQIAEGCAKVM 412 (1114)
Q Consensus 377 ~l~~~l~~~l~---~------------~--~~~~r~aal~~l~~l~~~~~~~~ 412 (1114)
.+.+.+..++- + + ++..-++.++++..++..+++.+
T Consensus 312 ~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 312 KLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp HHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHH
T ss_pred HHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhh
Confidence 55555555442 1 1 46677899999999998887654
No 123
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=89.08 E-value=8.6 Score=40.84 Aligned_cols=239 Identities=9% Similarity=0.097 Sum_probs=114.3
Q ss_pred CCChhHHHHHHHHHHHHHhh--c-HHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhH-
Q 001249 388 APEWQKHHAALIALAQIAEG--C-AKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVL- 462 (1114)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~--~-~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il- 462 (1114)
++.|..-...+..+..+.+. . ++..+++++ .++-.++..+..++|+-|......|.++-..+... ..+....+
T Consensus 140 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~--R~~Irk~i~ 217 (392)
T 2jak_A 140 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGL--RAYIRKQIN 217 (392)
T ss_dssp CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHH
T ss_pred ccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 34566665666555555443 1 122334444 47778888999999999999888887766544321 12222222
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHhhhcCCccccc-CchHHHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHhhhhhhhh
Q 001249 463 PALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT-PYLDGIVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQK 540 (1114)
Q Consensus 463 ~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~-~~l~~il~~L~~~l~~~~~-~v~~~al~~l~~l~~~~~~~~~~ 540 (1114)
..+.+.+.......--......++.++.+.... +. .+..-+...|+.+...... ..-.....|+..++..-+.
T Consensus 218 nif~~fiye~e~~~GIaeLLeilgsIIngfa~P-LKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~---- 292 (392)
T 2jak_A 218 NIFYRFIYETEHHNGIAELLEILGSIINGFALP-LKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST---- 292 (392)
T ss_dssp HHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSS-CCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGG----
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCch----
Confidence 222333322112222245566666777665421 11 2222334444444433321 1122333444444433222
Q ss_pred hHhhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHHhchhhhhhhHHHHHHHHHHHhcCCCCCCCchhhHHHHHHH--
Q 001249 541 YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWA-- 618 (1114)
Q Consensus 541 ~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~f~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 618 (1114)
....++..|...|-..+. ....+ -+.-+..+...++.+.|.+....+...+....++ ..-.+.+.++..|.
T Consensus 293 L~~~vi~~LLk~WP~tns-~Kevl---FL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S---~hfqVAErAL~~wnNe 365 (392)
T 2jak_A 293 LTEPVVMALLKYWPKTHS-PKEVM---FLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSS---PHFQVAERALYYWNNE 365 (392)
T ss_dssp GHHHHHHHHHHSSCSSCC-TTHHH---HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC---SSHHHHHHHHGGGGCH
T ss_pred hHHHHHHHHHHhCCCCCc-hHHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHhCcH
Confidence 333455555555543222 11111 2444556666677777887777777777664442 11235555555553
Q ss_pred HHHHHhccCCccchhhhhHHHH
Q 001249 619 RLCKCLGQDFLPYMSVVMPPLL 640 (1114)
Q Consensus 619 ~l~~~~~~~~~~~l~~i~~~ll 640 (1114)
.+...+.+.-...+|.++|.+.
T Consensus 366 ~i~~li~~n~~~ilPii~~~L~ 387 (392)
T 2jak_A 366 YIMSLISDNAAKILPIMFPSLY 387 (392)
T ss_dssp HHHHHHHHTHHHHTTTSCC---
T ss_pred HHHHHHHhhhccchhhhhHHHH
Confidence 2333333333333444444433
No 124
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.86 E-value=0.13 Score=51.53 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=65.0
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhh
Q 001249 382 LPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV 461 (1114)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~i 461 (1114)
+..++++++|.+|.++...++ -+.+...++|+++.||.++...+ ..
T Consensus 151 l~~l~~D~d~~VR~~aa~~l~-----------------~~ll~~ll~D~d~~VR~aaa~~l-------~~---------- 196 (244)
T 1lrv_A 151 LFRFMRDEDRQVRKLVAKRLP-----------------EESLGLMTQDPEPEVRRIVASRL-------RG---------- 196 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHSC-----------------GGGGGGSTTCSSHHHHHHHHHHC-------CG----------
T ss_pred HHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHHHcCCCHHHHHHHHHhC-------CH----------
Confidence 446778999999998876411 13445678999999999888653 11
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 001249 462 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALA 528 (1114)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~ 528 (1114)
+.+...+.| +++.||..+...+. .+.|..+ +++++.||..+...+|
T Consensus 197 -~~L~~Ll~D-~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 197 -DDLLELLHD-PDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -GGGGGGGGC-SSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -HHHHHHHcC-CCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 234556788 89999999888742 1344445 8899999998876554
No 125
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=88.67 E-value=3 Score=37.31 Aligned_cols=77 Identities=10% Similarity=0.297 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1114)
...+..|.+.|.+.+|.+...|+..|..+.+.+++.+.... ...++..+.+.+.. .++.|+..+...+....+.++.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhCC
Confidence 35667778888999999999999999999999988764221 23445555555555 6789999999999888877654
No 126
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=88.30 E-value=29 Score=36.90 Aligned_cols=171 Identities=18% Similarity=0.201 Sum_probs=106.5
Q ss_pred cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhc--
Q 001249 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG-- 450 (1114)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-- 450 (1114)
.+++.+++.+.++..+++..+|.-+...++..+..- .+++..+++.+...++|.++.|...+..+.+.+....-
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~----~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~ 134 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD----IELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQW 134 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666767777888999988888877666432 24577888888888999999998888877776653211
Q ss_pred ----hh---HHh---hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc-----c------------ccc---Cc
Q 001249 451 ----PD---LQN---QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-----E------------ILT---PY 500 (1114)
Q Consensus 451 ----~~---~~~---~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~-----~------------~l~---~~ 500 (1114)
+. ... ..+..+-..++..+.. .+..||..|..++..++-...+ + .+. |+
T Consensus 135 i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds-~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~ 213 (386)
T 3o2t_A 135 MVKSRVISELQEACWDMVSAMAGDIILLLDS-DNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPY 213 (386)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSS
T ss_pred HhcCCCcchhHHHHHHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCc
Confidence 10 001 1233444456666666 7889999999999987732110 0 011 12
Q ss_pred ---------hHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHhhhhhhhhhHhhhhHHHHHH
Q 001249 501 ---------LDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 552 (1114)
Q Consensus 501 ---------l~~il~~L~~~l~~~~--~~v~~~al~~l~~l~~~~~~~~~~~~~~i~~~L~~~ 552 (1114)
-..++..|+..+..+. ...-...+.+++.++..=+. |++.+++.+...
T Consensus 214 L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~----~~~rIl~aL~~l 272 (386)
T 3o2t_A 214 IQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPM----FMSEVIQAYETL 272 (386)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGG----GHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHH----HHHHHHHHHHhh
Confidence 2356778888887542 32333455555555543222 677788877654
No 127
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=88.00 E-value=5.2 Score=36.83 Aligned_cols=78 Identities=14% Similarity=0.275 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhh-hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1114)
...+..|.+.|++.+|.++..|+..|..+.+.++..+..... ..++..+.+.+....++.|+..+...+....+.++.
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 356677888889999999999999999999999887742221 334444444444325789999999999988887764
No 128
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=87.49 E-value=40 Score=42.07 Aligned_cols=245 Identities=11% Similarity=0.091 Sum_probs=126.3
Q ss_pred HHHHhCCChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhc-CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCC
Q 001249 13 LAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQ-DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSF 91 (1114)
Q Consensus 13 ~~~~~~~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~-~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~ 91 (1114)
+..+-.++.++|.++++.+... ...|+. .+..+... .++. +..+.+.+.+..-.... |+.+|...+..
T Consensus 317 v~~lR~~~~e~L~~l~~~~~~~-~~~r~~---~lDal~~aGT~~a-~~~i~~~i~~~~l~~~e--a~~~l~~~~~~---- 385 (1056)
T 1lsh_A 317 TAFLRNVDAGVLQSIWHKLHQQ-KDYRRW---ILDAVPAMATSEA-LLFLKRTLASEQLTSAE--ATQIVASTLSN---- 385 (1056)
T ss_dssp HHHHTTSCHHHHHHHHHHHTTS-HHHHHH---HHHHHHHHCSHHH-HHHHHHHHHTTCSCHHH--HHHHHHHHHHT----
T ss_pred HHHHhcCCHHHHHHHHHHHhcc-HHHHHH---HHHHhHhcCCHHH-HHHHHHHHHcCCCCHHH--HHHHHHHhhcc----
Confidence 3445556777777777766532 223332 22222221 2333 35556666543222222 22222222110
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhc---hhhhHHHHHHHHHHHHHhcccCCC------CchhhHHHHHHhhcCCChhhHHH
Q 001249 92 LWPRLSLHTQSSLKSMLLQSIQLE---SAKSISKKLCDTVSELASNILPEN------GWPELLPFMFQCVSSDSVKLQES 162 (1114)
Q Consensus 92 ~w~~l~~~~~~~i~~~ll~~l~~e---~~~~vr~~~~~~i~~ia~~~~~~~------~w~~ll~~l~~~~~~~~~~~r~~ 162 (1114)
..-+++.... +...+.++ .++.+|+.+.-+++.++....... .-+.+...+.+.+...+...+..
T Consensus 386 --~~Pt~e~l~~----~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~ 459 (1056)
T 1lsh_A 386 --QQATRESLSY----ARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVL 459 (1056)
T ss_dssp --CCCCHHHHHH----HHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHH
T ss_pred --CCCCHHHHHH----HHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 0112444433 33334321 356788888888888887654321 12445555556666777777888
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHhhc------CCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHH
Q 001249 163 AFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLT------NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTL 236 (1114)
Q Consensus 163 al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~------~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l 236 (1114)
++.+|+.+.-. . .+ +.+.+++. ......+|.+|+.+|..+.... ++... +.+++.+
T Consensus 460 ~LkaLGN~g~p--~----~l----~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~---~il~~i~ 521 (1056)
T 1lsh_A 460 ALKALGNAGQP--N----SI----KKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQ---EIVLPIF 521 (1056)
T ss_dssp HHHHHHHHTCG--G----GH----HHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHH---HHHHHHH
T ss_pred HHHHhhccCCh--h----HH----HHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-----hHHHH---HHHHHHh
Confidence 88888877531 1 12 23333332 1124578899999988776532 11111 1233332
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHh
Q 001249 237 TESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1114)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1114)
.. ...++++|..|+..|.. +.|.. .++..+...+. .+.+..|+......+.++++.
T Consensus 522 ~n--~~e~~EvRiaA~~~Lm~---t~P~~------~~l~~ia~~l~-~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 522 LN--VAIKSELRIRSCIVFFE---SKPSV------ALVSMVAVRLR-REPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp HC--TTSCHHHHHHHHHHHHH---TCCCH------HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTC
T ss_pred cC--CCCChHHHHHHHHHHHH---HCcCH------HHHHHHHHHHh-hCchHHHHHHHHHHHHHHHhc
Confidence 21 24578899998877653 22211 11222222233 345778888888888888874
No 129
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=87.39 E-value=33 Score=36.56 Aligned_cols=93 Identities=12% Similarity=0.180 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHh---c
Q 001249 206 LNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIA---E 282 (1114)
Q Consensus 206 ~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~---~ 282 (1114)
+.-+..+++.+ ....|....+.+.+.+..++.+++..+...|+..|.. +..-..+..+...+++.++..+ .
T Consensus 272 L~Ele~iLe~~----~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnN--e~i~~li~~n~~~IlPii~p~L~~~~ 345 (403)
T 3fga_B 272 LNELEEILDVI----EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN--EYIMSLISDNAAKILPIMFPSLYRNS 345 (403)
T ss_dssp HHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC--HHHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcc--HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344444443 3456778888899999999999999999988877631 0111223333334444433322 2
Q ss_pred cCCcchhHHHHHHHHHHHHHHh
Q 001249 283 AESLEEGTRHLAIEFVITLAEA 304 (1114)
Q Consensus 283 ~~~~~~~vr~~a~~~l~~l~~~ 304 (1114)
..+.+..+|..+..++..+.+.
T Consensus 346 ~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 346 KTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp SCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHccCHHHHHHHHHHHHHHHHh
Confidence 3467889999998888888773
No 130
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=86.79 E-value=39 Score=36.72 Aligned_cols=237 Identities=11% Similarity=0.077 Sum_probs=123.5
Q ss_pred ChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCch--HHH-----HHHHHHH-ccCCCHHHHHHHHHHHHHhcccCCCC
Q 001249 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPD--SLT-----LKLAHLL-QRSPHPEARAMAAVLLRKLLTRDDSF 91 (1114)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~--~~~-----~~L~~il-~~~~~~~~R~~A~~~Lk~~l~~~~~~ 91 (1114)
|..-+.++|..+.|+|...|..-...|..+.....+ .++ ..+...+ .+.....+- -..-+|..+++.-
T Consensus 160 d~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIa-eLLeilgSIinGf--- 235 (449)
T 2npp_B 160 DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA-ELLEILGSIINGF--- 235 (449)
T ss_dssp CHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHH-HHHHHHHHHHSSC---
T ss_pred CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHH-HHHHHHHHHHhcc---
Confidence 445678888888899999998888877654432110 011 1111111 111111111 1122344444431
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhh
Q 001249 92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1114)
Q Consensus 92 ~w~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~ 171 (1114)
-..+.++.+..+.+.|+.......-...-..++.++..+...+-. --..++..|+..---.+..-...-+.-+..++
T Consensus 236 -a~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~--L~~~vi~~LLk~WP~tns~KevlFL~eleeil 312 (449)
T 2npp_B 236 -ALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST--LTEPVVMALLKYWPKTHSPKEVMFLNELEEIL 312 (449)
T ss_dssp -CSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGG--GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred -CCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcH--hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 113556666666666666655433333445667777666654311 11122222222211223322233455666777
Q ss_pred hhhh-hhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHH--HHHhcCCcchHhHHHhhHHHHHHHHHHHHhCC-CHHH
Q 001249 172 QYIG-DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN--FIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-NEAT 247 (1114)
Q Consensus 172 ~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~--l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~-~~~~ 247 (1114)
+..+ .++......++..+..+++++ +.+|-..|+....+ ++..+. +.-...+|.+...+.+..... +..+
T Consensus 313 e~~~~~ef~~i~~~lF~~la~ci~S~-hfqVAErAL~~w~N~~i~~li~-----~n~~~IlPii~p~L~~~s~~HWn~~V 386 (449)
T 2npp_B 313 DVIEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLIS-----DNAAKILPIMFPSLYRNSKTHWNKTI 386 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHH-----TTHHHHHHHHHHHHTSCTTCCSSTTH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHCCHHHHHHHH-----hchhhhHHhhHHHHHHHHHHhcCHHH
Confidence 6654 346667788899999999997 88887777654421 122111 111234455555544322222 5567
Q ss_pred HHHHHHHHHHHHccchHHHHHH
Q 001249 248 AQEALELLIELAGTEPRFLRRQ 269 (1114)
Q Consensus 248 ~~~~~~~l~~l~~~~~~~~~~~ 269 (1114)
+..+..++..+.+..+..|...
T Consensus 387 ~~la~~vlk~l~e~d~~lf~~c 408 (449)
T 2npp_B 387 HGLIYNALKLFMEMNQKLFDDC 408 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHHHHH
Confidence 8888888887777777666543
No 131
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=86.39 E-value=25 Score=43.93 Aligned_cols=174 Identities=14% Similarity=0.091 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHHcCCChHHHHHHHHHHHHhhh-cCc-hHHHHHHHHHHcc---CCCHHHHHHHHHHHHHhcccCCCCcc
Q 001249 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQ-QDP-DSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLW 93 (1114)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~-~~p-~~~~~~L~~il~~---~~~~~~R~~A~~~Lk~~l~~~~~~~w 93 (1114)
-+...+..+.+.+.+.+-.... |...|..... ..| ...+..+..++.+ ..++.+|+.|...+..++.+.....
T Consensus 353 GT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~- 430 (1056)
T 1lsh_A 353 ATSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT- 430 (1056)
T ss_dssp CSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC-
Confidence 3445555556555554322222 3232322111 124 2245556666654 3467889988888888887631111
Q ss_pred cCCCHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcC-------CChhhHHHHHHH
Q 001249 94 PRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS-------DSVKLQESAFLI 166 (1114)
Q Consensus 94 ~~l~~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~-------~~~~~r~~al~~ 166 (1114)
...+++....+.+.+.+.+.. .+..-+.....+||.+.. |..++.+..++.. ....+|..|+.+
T Consensus 431 ~~c~~~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~g~--------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~A 501 (1056)
T 1lsh_A 431 VSCPDELLQPLHDLLSQSSDR-AKEEEIVLALKALGNAGQ--------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMA 501 (1056)
T ss_dssp SSCCGGGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTC--------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhccCC--------hhHHHHHHHhhcCccccccccchHHHHHHHHH
Confidence 123556677788888888876 355555666677776643 5667777777632 123577889999
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHhhcCC-CChHHHHHHHHHHH
Q 001249 167 FAQLSQYIGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVI 210 (1114)
Q Consensus 167 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~ 210 (1114)
|..+....+..+. +++.+.+.+. .+.++|.+|+..+.
T Consensus 502 Lr~~~~~~p~~v~-------~il~~i~~n~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 502 LRNIAKRDPRKVQ-------EIVLPIFLNVAIKSELRIRSCIVFF 539 (1056)
T ss_dssp TTTGGGTCHHHHH-------HHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHhhhhchHHHH-------HHHHHHhcCCCCChHHHHHHHHHHH
Confidence 9988765444322 2344444222 37899999987663
No 132
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=85.93 E-value=7.1 Score=36.26 Aligned_cols=78 Identities=9% Similarity=0.189 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccC-----CCChhHHHHHHHHHHHhhh
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDD-----FQNPRVQAHAASAVLNFSE 490 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~-----~~~~~v~~~a~~al~~l~~ 490 (1114)
...+..|.+.+++.|+.++..|+..|..+.+.++..+.... -..++..+.+.+.. ..+..|+..+...+.....
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34667788888999999999999999999999987774322 23456666665542 1357899999999999888
Q ss_pred cCCc
Q 001249 491 NCTP 494 (1114)
Q Consensus 491 ~~~~ 494 (1114)
.++.
T Consensus 129 ~f~~ 132 (171)
T 1juq_A 129 ALPE 132 (171)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 7763
No 133
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=85.12 E-value=38 Score=35.00 Aligned_cols=149 Identities=10% Similarity=0.051 Sum_probs=86.2
Q ss_pred HhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhH-HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhh
Q 001249 150 QCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHL-KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDL 228 (1114)
Q Consensus 150 ~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l 228 (1114)
+.+.+++...+..++.-|..+.....+...+++ ..=+..+.+..... +......+++++..++.+.. ..+.+..
T Consensus 125 ekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~---Gm~gvvs- 199 (339)
T 3dad_A 125 EKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVD---GMLGVVA- 199 (339)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHH---HHHHHHH-
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccc---cccchhC-
Confidence 334445555566677777765432111111111 12244555556665 88999999999999988642 1222211
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccchH---HHHHHHHH--------HHHHHHHHhcc-CCcchhHHHHHHH
Q 001249 229 LPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR---FLRRQLVD--------VVGSMLQIAEA-ESLEEGTRHLAIE 296 (1114)
Q Consensus 229 ~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~---~~~~~~~~--------l~~~ll~~~~~-~~~~~~vr~~a~~ 296 (1114)
-|.+++.+...+.+.+..+.+.++.+|..+++.... .+..-+.. .+..++..+.. ...+.++...|+.
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 256777777777777888989999998888775532 22111110 12333444431 1246677788887
Q ss_pred HHHHHHH
Q 001249 297 FVITLAE 303 (1114)
Q Consensus 297 ~l~~l~~ 303 (1114)
.+..+..
T Consensus 280 LIN~lL~ 286 (339)
T 3dad_A 280 LINKTLA 286 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776665
No 134
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=82.49 E-value=7 Score=34.91 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=56.4
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchh
Q 001249 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (1114)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 452 (1114)
..+..+...+++.++++..-|+..+..++.+|+..+...+ ..++..+...+...++.||..++..+...+..++..
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 4556677778889999999999999999999987655433 233443334444578899999999999888877653
No 135
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=82.24 E-value=57 Score=34.83 Aligned_cols=229 Identities=15% Similarity=0.131 Sum_probs=119.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHhhhcc
Q 001249 232 MMRTLTESLNNGNEATAQEALELLIELAGTEP---RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA 308 (1114)
Q Consensus 232 ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 308 (1114)
++..|...+.++|+..|...-.++..+-.... .+++..+..++- +..-..+....+ ...++++++++.. .+
T Consensus 130 Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~---~fiye~e~~~GI-aeLLeilgsIinG--fa 203 (403)
T 3fga_B 130 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFY---RFIYETEHHNGI-AELLEILGSIING--FA 203 (403)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH---HHHHTTCCCTTH-HHHHHHHHHHHHH--CC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---HHhcCcccCCCH-HHHHHHHHHHHcc--cC
Confidence 44555666778899999888777776654332 234444443332 222111222233 2578888888873 11
Q ss_pred chhhhcchhhHHHHHHHHHHhhcCCCCCcccccCCCCCccccCCCch-hhHHHHHHHHHHHcCCCcchHHHHHHHHHhhC
Q 001249 309 PGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNY-SVGQECLDRLAIALGGNTIVPVASEQLPAYLA 387 (1114)
Q Consensus 309 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~-~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 387 (1114)
..+.. .+..-+...++..-.... ...+ ..-..|+..+.+.-+ .+...++..+....-
T Consensus 204 ~PLke---ehk~fl~~vLlPLHk~~~-----------------~~~y~~qL~ycv~qf~eKDp--~L~~~vi~~LLk~WP 261 (403)
T 3fga_B 204 LPLKE---EHKIFLLKVLLPLHKVKS-----------------LSVYHPQLAYCVVQFLEKDS--TLTEPVVMALLKYWP 261 (403)
T ss_dssp SSCCH---HHHHHHHHTTTGGGGSTT-----------------GGGTHHHHHHHHHHHHHHCG--GGHHHHHHHHHHTCC
T ss_pred CCchH---HHHHHHHHHHHHHHcCCc-----------------chhhHHHHHHHHHHHHHhCc--hhHHHHHHHHHHhCC
Confidence 11111 111112222222211110 0011 122334444444332 344444444444433
Q ss_pred CCChhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHH
Q 001249 388 APEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 466 (1114)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~ 466 (1114)
-.+......-+.-+..+.+..+ ..+.+....++..+..++.+++-.|-..|+..... +.+-.-+ ..+...++|.++
T Consensus 262 ~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnN--e~i~~li-~~n~~~IlPii~ 338 (403)
T 3fga_B 262 KTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN--EYIMSLI-SDNAAKILPIMF 338 (403)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC--HHHHHHH-HTTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcc--HHHHHHH-HHhHHHHHHHHH
Confidence 3444444445555666776654 46667778889999999999999998888755422 0111111 234444555544
Q ss_pred ----hhccCCCChhHHHHHHHHHHHhhhc
Q 001249 467 ----GAMDDFQNPRVQAHAASAVLNFSEN 491 (1114)
Q Consensus 467 ----~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1114)
+.....=+..|+..+..++..+.+.
T Consensus 339 p~L~~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 339 PSLYRNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp HHHHHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 4444412567889999998887664
No 136
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=81.05 E-value=31 Score=35.58 Aligned_cols=146 Identities=15% Similarity=0.092 Sum_probs=91.1
Q ss_pred CCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHH
Q 001249 387 AAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPAL 465 (1114)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l 465 (1114)
.+.+-+.+.-+++.|..+...-.++..+++. .=+..++....+.+.+...-++.+++++..+...--.--..+.++..+
T Consensus 128 ~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~l 207 (339)
T 3dad_A 128 YSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWL 207 (339)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHH
Confidence 3556677777888888744322222222221 123444445556688899999999999887632110001156788888
Q ss_pred HhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHH------------HHHHHHHHhh---cCChhHHHHHHHHHHHH
Q 001249 466 AGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG------------IVSKLLVLLQ---NGKQMVQEGALTALASV 530 (1114)
Q Consensus 466 ~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~------------il~~L~~~l~---~~~~~v~~~al~~l~~l 530 (1114)
...+.. ....|...|...|..+++...... +-+.. .++.|+..++ ..+..++..++..|..+
T Consensus 208 yslv~s-~~~~V~k~AL~LL~v~V~~se~~~--~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~l 284 (339)
T 3dad_A 208 YTLCAS-LSRLVVKTALKLLLVFVEYSENNA--PLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKT 284 (339)
T ss_dssp HHGGGC-SCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHcC-ccHHHHHHHHHHHHHHHccCcccc--hHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 888887 778898999999999988764211 11111 1345556665 56778888888888877
Q ss_pred HHhhh
Q 001249 531 ADSSQ 535 (1114)
Q Consensus 531 ~~~~~ 535 (1114)
....+
T Consensus 285 L~~ap 289 (339)
T 3dad_A 285 LAALP 289 (339)
T ss_dssp HHHCS
T ss_pred HhcCC
Confidence 76654
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=79.41 E-value=9.8 Score=37.32 Aligned_cols=78 Identities=10% Similarity=0.217 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1114)
...+..|.+.|++.+|.+...|+..|..+.+.++..+.... -..++..+.+.++...++.|+..+...+....+.+..
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 45677788888999999999999999999999887663222 2334444444444435788999999999988887754
No 138
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=78.96 E-value=14 Score=33.28 Aligned_cols=77 Identities=8% Similarity=0.155 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccC-----CCChhHHHHHHHHHHHhhhc
Q 001249 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDD-----FQNPRVQAHAASAVLNFSEN 491 (1114)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~-----~~~~~v~~~a~~al~~l~~~ 491 (1114)
..+..|.+.+++.+|.+...|+..|..+.+.++..+.... ...++..+.+.+.+ ..++.|+..+...+......
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567777888899999999999999999999988773222 34566666666643 14678999999999998887
Q ss_pred CCc
Q 001249 492 CTP 494 (1114)
Q Consensus 492 ~~~ 494 (1114)
++.
T Consensus 128 f~~ 130 (149)
T 3g2s_A 128 LPE 130 (149)
T ss_dssp CTT
T ss_pred hCC
Confidence 753
No 139
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=78.34 E-value=0.67 Score=46.30 Aligned_cols=68 Identities=26% Similarity=0.315 Sum_probs=50.1
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhh
Q 001249 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1114)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 460 (1114)
.+..+++|++|.+|.++...+. .+.+...+.|+++.||.++...++
T Consensus 174 ll~~ll~D~d~~VR~aaa~~l~-----------------~~~L~~Ll~D~d~~VR~~aa~~l~----------------- 219 (244)
T 1lrv_A 174 SLGLMTQDPEPEVRRIVASRLR-----------------GDDLLELLHDPDWTVRLAAVEHAS----------------- 219 (244)
T ss_dssp GGGGSTTCSSHHHHHHHHHHCC-----------------GGGGGGGGGCSSHHHHHHHHHHSC-----------------
T ss_pred HHHHHHcCCCHHHHHHHHHhCC-----------------HHHHHHHHcCCCHHHHHHHHHcCC-----------------
Confidence 3446778999999999876531 145677789999999999988764
Q ss_pred hHHHHHhhccCCCChhHHHHHHHHH
Q 001249 461 VLPALAGAMDDFQNPRVQAHAASAV 485 (1114)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al 485 (1114)
.+.+ ..|.| +++.||..+...|
T Consensus 220 -~~~L-~~L~D-~~~~VR~aa~~~L 241 (244)
T 1lrv_A 220 -LEAL-RELDE-PDPEVRLAIAGRL 241 (244)
T ss_dssp -HHHH-HHCCC-CCHHHHHHHHCCC
T ss_pred -HHHH-HHccC-CCHHHHHHHHHHh
Confidence 1233 33577 8999999887654
No 140
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=77.49 E-value=30 Score=31.10 Aligned_cols=78 Identities=8% Similarity=0.189 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccC-----CCChhHHHHHHHHHHHhhh
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDD-----FQNPRVQAHAASAVLNFSE 490 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~-----~~~~~v~~~a~~al~~l~~ 490 (1114)
...+..|.+.+++.+|.+...|+..|..+.+.+++.+.... -..++..+.+.+.. ..++.|+..+...+.....
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34567778888999999999999999999999998774333 35677777776653 1367899999999998887
Q ss_pred cCCc
Q 001249 491 NCTP 494 (1114)
Q Consensus 491 ~~~~ 494 (1114)
.++.
T Consensus 117 ~f~~ 120 (148)
T 1mhq_A 117 WFPE 120 (148)
T ss_dssp HCTT
T ss_pred HcCC
Confidence 7753
No 141
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=77.36 E-value=16 Score=35.87 Aligned_cols=93 Identities=10% Similarity=0.112 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhhchhhhHHH-----HHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhh--hHhHHHHHHHhc
Q 001249 860 VGEILGTLIKTFKAAFLPFFDE-----LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKY--YETYLPFLLEAC 932 (1114)
Q Consensus 860 ~~~~l~~l~~~~~~~~~~~~~~-----l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~--~~~i~~~ll~~l 932 (1114)
+..++..++. +++.=.+++.. +.|++....+..+-+-.|-.+++++|.+++.-.+.+..| -.+++|..++.+
T Consensus 76 aLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 76 ALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp HHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHH
Confidence 4455666664 44433344443 344432221111124468899999999999876777665 358999999999
Q ss_pred cCCChhHHhhhhHHHHHHHhh
Q 001249 933 NDENQDVRQAAVYGLGVCAEF 953 (1114)
Q Consensus 933 ~~~~~~vr~~a~~~lg~l~~~ 953 (1114)
+.++.--|..|.+-+..+...
T Consensus 155 e~GselSKtvAtfIlqKIL~d 175 (268)
T 2fv2_A 155 ESGSELSKTVATFILQKILLD 175 (268)
T ss_dssp HHSCHHHHHHHHHHHHHHHHS
T ss_pred hhccHHHHHHHHHHHHHHhcc
Confidence 999999999999988887643
No 142
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=76.75 E-value=24 Score=32.32 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHH
Q 001249 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1114)
Q Consensus 501 l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1114)
-...+..|.+-+++.++.++-.|+..+..++..+|..|...+ ..++..|..++... ....+|.++++.+...+.+
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~---~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNK---AHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHHHH
Confidence 345677788888899999999999999999999998876433 24666666666432 2346899999998888877
Q ss_pred hch
Q 001249 579 VGK 581 (1114)
Q Consensus 579 ~~~ 581 (1114)
++.
T Consensus 127 f~~ 129 (163)
T 1x5b_A 127 FQK 129 (163)
T ss_dssp TTT
T ss_pred hcC
Confidence 663
No 143
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=74.76 E-value=20 Score=35.03 Aligned_cols=78 Identities=6% Similarity=0.201 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1114)
...+..|.+.|++.+|.++..|+..|..+.+.+++.+.... -..++..+.+.+.+.++..|+..+...+......+..
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 45667778888999999999999999999999887663221 2234455444444435789999999988888877653
No 144
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=74.28 E-value=24 Score=31.71 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=58.0
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhcCCC------CChhHHHHHHHHHHHhHhh
Q 001249 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRD------PHPRVRWAAINAIGQLSTD 448 (1114)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d------~~~~vr~~a~~~l~~l~~~ 448 (1114)
..+..+...+++.++++..-|+..+..++.+|+..+...+ ..++..+.+.+.+ .++.||..++..+...+..
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 3556677778899999999999999999999998665443 2455555555543 5789999999999999887
Q ss_pred hch
Q 001249 449 LGP 451 (1114)
Q Consensus 449 ~~~ 451 (1114)
++.
T Consensus 128 f~~ 130 (149)
T 3g2s_A 128 LPE 130 (149)
T ss_dssp CTT
T ss_pred hCC
Confidence 754
No 145
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=73.61 E-value=87 Score=32.30 Aligned_cols=188 Identities=16% Similarity=0.183 Sum_probs=111.5
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCC-HHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHhcccCCC--Cchhh
Q 001249 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLS-LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN--GWPEL 144 (1114)
Q Consensus 68 ~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~-~~~~~~i~~~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~--~w~~l 144 (1114)
.-+-+.|.-++.++.+.++..-...+.... -..+..+...|+.+.. ++.+--..+..+..+++++.-.. -+.+.
T Consensus 89 ~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLRecir~e~la~~iL~~~~ 165 (341)
T 1upk_A 89 LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLRECIRHEPLAKIILWSEQ 165 (341)
T ss_dssp GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHHHHHTSHHHHHHHHHSGG
T ss_pred cCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHHHHHHhHHHHHHHhccHH
Confidence 457788888888888887764211121100 0012233333443333 34444445555555554321000 11233
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhhhhh----hhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcc
Q 001249 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYI----GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA 220 (1114)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~----~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 220 (1114)
+-.+++.++.++=++-.-|+..+..+.... .+.+..+++.++..+.+.+.++ +..+|..+++.|+.++..-....
T Consensus 166 f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKLLgelLldr~N~~ 244 (341)
T 1upk_A 166 FYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLGELLLDRHNFT 244 (341)
T ss_dssp GGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHSGGGHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhCchHHH
Confidence 445667888888777777888888887653 2345557888888899989987 99999999999999986421100
Q ss_pred hHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Q 001249 221 DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1114)
Q Consensus 221 ~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~ 260 (1114)
....+.. =|.-++.+..++.+....++..|+.+|--++.
T Consensus 245 vM~~Yis-~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 245 IMTKYIS-KPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHTT-CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 0000100 12345566666778888888888887766654
No 146
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=72.97 E-value=39 Score=31.22 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhH--hhhhHHHHHHHhhcc--CccchhhhHHHHHHHHHHHH
Q 001249 502 DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNAT--DKSNRMLRAKSMECISLVGM 577 (1114)
Q Consensus 502 ~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~--~~~~~~lr~~a~~~l~~i~~ 577 (1114)
...+..|.+-+++.++.++-.|+..+..++..+|..|...+ ..++..|..++.... ......+|.++++.+...+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999998876433 346666777664311 12346789999999999988
Q ss_pred HhchhhhhhhHHHHHHHHH
Q 001249 578 AVGKDKFRDDAKQVMEVLM 596 (1114)
Q Consensus 578 ~~~~~~f~~~~~~i~~~l~ 596 (1114)
+++.+ |.+.+.+..|.
T Consensus 129 ~f~~~---~~i~~~y~~Lk 144 (171)
T 1juq_A 129 ALPEE---AKIKDAYHMLK 144 (171)
T ss_dssp HCTTC---HHHHHHHHHHH
T ss_pred HcCCC---cHHHHHHHHHH
Confidence 77632 34444444433
No 147
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=72.35 E-value=22 Score=32.02 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=59.8
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhcCCC------CChhHHHHHHHHHHHhHhh
Q 001249 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRD------PHPRVRWAAINAIGQLSTD 448 (1114)
Q Consensus 377 ~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d------~~~~vr~~a~~~l~~l~~~ 448 (1114)
..+..+...+++.++++..-|+..|..++.+|+..+...+ ..++..+.+.+.+ .++.||..++..+...+..
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3556677778899999999999999999999998776554 3567777776654 4789999999999988887
Q ss_pred hch
Q 001249 449 LGP 451 (1114)
Q Consensus 449 ~~~ 451 (1114)
++.
T Consensus 118 f~~ 120 (148)
T 1mhq_A 118 FPE 120 (148)
T ss_dssp CTT
T ss_pred cCC
Confidence 754
No 148
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=71.84 E-value=78 Score=39.65 Aligned_cols=206 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCchH----HHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHH-----------
Q 001249 42 AELLFNLCKQQDPDS----LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKS----------- 106 (1114)
Q Consensus 42 Ae~~L~~~~~~~p~~----~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~----------- 106 (1114)
++++++.+.. .++. .+..++=++--+.+...|..|-.++|+.+... .++++.......
T Consensus 327 ~eAwlK~I~~-~~~~~~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G------~it~~ll~~~f~~h~~vL~~~f~ 399 (1323)
T 3s4w_B 327 SEAWFKAIER-IESAAEHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSD------CIQEQLLDSAFSTHYLVLKDICP 399 (1323)
T ss_dssp HHHHHHHHHH-GGGSTTCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTT------CSCHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHhC-CCcccccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcC------CchHHHHHHHHHhhHHHHHHHHH
Q ss_pred ---HHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHH
Q 001249 107 ---MLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK 183 (1114)
Q Consensus 107 ---~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 183 (1114)
.+.+.|..+.++.++.-.+.....+.+.. ....-.+++..|...+.+++......|+.+|..+++..+..+.+ ..
T Consensus 400 siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f-d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~-~a 477 (1323)
T 3s4w_B 400 SILLLAQTLFHSQDQRIILFGSLLYKYAFKFF-DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRL-NA 477 (1323)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHH-TH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhH-HH
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcc
Q 001249 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1114)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~~l~~~ 261 (1114)
.++..++..+.+-+..++|.. +..++.++-.-... ....+.+ .+.-++...+.+.+...+..++-.-..++..
T Consensus 478 ~~l~giLD~l~~l~~~QiRkl-f~iL~~laf~~~~~-~~~~i~d---dl~ivIRKQLs~~~~~~KriGIIGav~~v~~ 550 (1323)
T 3s4w_B 478 AFVKGILDYLENMSPQQIRKI-FCILSTLAFSQQPG-TSNHIQD---DMHLVIRKQLSSTVFKYKLIGIIGAVTMAGI 550 (1323)
T ss_dssp HHHHGGGGGGGGCCHHHHHHH-HHHHHHHHHHHCSS-CCCHHHH---HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHH-HHHHHHHHcCCCCC-cchhhHH---hHHHHHHHHHhCCchhhhhhhHHHHHHHHHH
No 149
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=71.82 E-value=1.2e+02 Score=33.13 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=43.9
Q ss_pred CChhHHHHHHHHHHHhHhhhchhHHhhhhh--hhHHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 001249 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHP--QVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1114)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1114)
.+|.+-..||.=+|.++++.+..- .... ..=..+++.+.+ ++++||..|..|+..+..
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr--~i~~~lg~K~~VM~Lm~h-~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESI--DVLDKTGGKADIMELLNH-SDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHSHHHHHHHHTSC-SSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchh--HHHHHcCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 468888999999999999875432 1111 234566778888 899999999999988764
No 150
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=70.08 E-value=37 Score=33.09 Aligned_cols=139 Identities=10% Similarity=-0.012 Sum_probs=84.2
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCC-CCChhHHHHHHHHHHHhHhhhchhHHhhhh
Q 001249 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1114)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1114)
.++.++..++.-..|..|+..++.......+ .-++.+-..+. -.++.+....+.+++.+.. .+-
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~--------~~~ 122 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVA--------LHL 122 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHH--------HSG
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHH--------HCh
Confidence 5566666777777888888888765433221 22333333333 4566777665555555543 223
Q ss_pred hhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhh
Q 001249 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHF 538 (1114)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~ 538 (1114)
..+.+.+..-..+ ++.-+|..|+.++-... -..+.+.+++.+...+.++...|+..+-.+|..+...-++..
T Consensus 123 ~~~~~~i~~W~~s-~~~w~rR~ai~~~l~~~-------~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v 194 (220)
T 2b6c_A 123 TELPTIFALFYGA-ENFWNRRVALNLQLMLK-------EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWV 194 (220)
T ss_dssp GGHHHHHHHHTTC-SSHHHHHHHHHTTTTCG-------GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHH
Confidence 3455667777777 77777777765432111 124556677777778888888999888888877776555443
Q ss_pred hhh
Q 001249 539 QKY 541 (1114)
Q Consensus 539 ~~~ 541 (1114)
.+|
T Consensus 195 ~~f 197 (220)
T 2b6c_A 195 EEL 197 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 151
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=69.61 E-value=56 Score=29.66 Aligned_cols=78 Identities=8% Similarity=0.092 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCC-CCChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHH-HHhhccC--CCChhHHHHHHHHHHHhhhc
Q 001249 417 EQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPA-LAGAMDD--FQNPRVQAHAASAVLNFSEN 491 (1114)
Q Consensus 417 ~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~-l~~~l~~--~~~~~v~~~a~~al~~l~~~ 491 (1114)
...+..|.+.++ ..|+.++..|+..|..+.+.+++.+.... -..++.. +.+.+.. .+...|+..+...+......
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 356677778887 58999999999999999999988774322 2345555 4555532 13458999999998888876
Q ss_pred CCc
Q 001249 492 CTP 494 (1114)
Q Consensus 492 ~~~ 494 (1114)
++.
T Consensus 132 f~~ 134 (157)
T 1elk_A 132 FRS 134 (157)
T ss_dssp HTT
T ss_pred cCC
Confidence 653
No 152
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=68.96 E-value=11 Score=33.72 Aligned_cols=90 Identities=7% Similarity=0.109 Sum_probs=60.7
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhh-hhHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcC---CC
Q 001249 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALK-YYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGG---SV 957 (1114)
Q Consensus 882 l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~-~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~---~~ 957 (1114)
++..+...+. ...+..|..++.+++++++++|..+.+ +-..+.+.+.......++.+|......++..-+..+ ..
T Consensus 44 Iv~~i~~~i~-k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~~~~v 122 (144)
T 1sz9_A 44 FVDAIESRIE-KCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTGLPL 122 (144)
T ss_dssp HHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGCSSCS
T ss_pred HHHHHHHHhc-cCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcccCCCCC
Confidence 4444444443 356788999999999999999987766 444555666666666788999888888888866532 22
Q ss_pred chHHHHHHHHHHHHhhcC
Q 001249 958 VKPLVGEALSRLNVVIRH 975 (1114)
Q Consensus 958 ~~~~~~~~l~~L~~~l~~ 975 (1114)
|. +..++.|.+.|..
T Consensus 123 F~---~~~l~~i~~~l~~ 137 (144)
T 1sz9_A 123 FE---GSALEKIEQFLIK 137 (144)
T ss_dssp SC---HHHHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHHHh
Confidence 22 3556666665543
No 153
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=68.49 E-value=94 Score=30.59 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcc-cCCCHH
Q 001249 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLW-PRLSLH 99 (1114)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w-~~l~~~ 99 (1114)
.+++.+++..+.+|+ .|..|-..|-.-.+..|+ ..+.|++-.. .-+.+|.-.++.. ...+ +.++..
T Consensus 2 ~~~i~qli~~L~~p~--~Re~AL~eLsk~Re~~~~-La~~LW~S~G---------tia~LLQEIisiY-p~lspp~Lt~~ 68 (268)
T 2fv2_A 2 REKIYQWINELSSPE--TRENALLELSKKRESVPD-LAPMLWHSFG---------TIAALLQEIVNIY-PSINPPTLTAH 68 (268)
T ss_dssp CHHHHHHHHHTSSTT--THHHHHHHHHHHTTTCTT-HHHHHHHSTT---------HHHHHHHHHHHTG-GGBTTBCCCHH
T ss_pred hHHHHHHHHHhcCch--hHHHHHHHHHHhhhcccc-HHHHHHhccC---------HHHHHHHHHHHHc-ccCCCcccCHH
Confidence 467888999988775 577777766554443444 4455555321 1233344444331 0001 123333
Q ss_pred HHHHHHH--HHHHHHhhchhhhHHHHHHHHHHHHHhcccCCCCchhh-HHHHHHhhcC-CChhhHHHHHHHHHHhhhhhh
Q 001249 100 TQSSLKS--MLLQSIQLESAKSISKKLCDTVSELASNILPENGWPEL-LPFMFQCVSS-DSVKLQESAFLIFAQLSQYIG 175 (1114)
Q Consensus 100 ~~~~i~~--~ll~~l~~e~~~~vr~~~~~~i~~ia~~~~~~~~w~~l-l~~l~~~~~~-~~~~~r~~al~~l~~l~~~~~ 175 (1114)
.-+.+-+ .|+|.+.+ .+++|.... + ...|-+ .|++-...++ +.+..|-.++-+++.+++...
T Consensus 69 ~SnRVcnaLaLlQcvAs--hpetr~~Fl-------~-----a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd 134 (268)
T 2fv2_A 69 QSNRVCNALALLQCVAS--HPETRSAFL-------A-----AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDE 134 (268)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTTHHHHH-------H-----TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHhHHHHHHHHHHHHHc--CcchhhHHH-------H-----ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCc
Confidence 3332222 23444443 344444321 1 133443 3443332222 235789999999999998644
Q ss_pred hhhhhh--HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001249 176 DTLTPH--LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1114)
Q Consensus 176 ~~~~~~--~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 215 (1114)
.+...+ -.+++|.+++.+..+ +.--+..|.-.+..++..
T Consensus 135 ~eVi~fLL~tEiiplCLrime~G-selSKtvAtfIlqKIL~d 175 (268)
T 2fv2_A 135 QEVINFLLTTEIIPLCLRIMESG-SELSKTVATFILQKILLD 175 (268)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhHHHHHHHHHhhc-cHHHHHHHHHHHHHHhcc
Confidence 443332 235899999999987 888888888888888754
No 154
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=68.35 E-value=54 Score=31.98 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHH
Q 001249 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1114)
Q Consensus 501 l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1114)
-...+..|.+-+++.++.++..|+..+..++...|..|...+ ..++..|..++... ....+|.++++.+...+.+
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~---~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQ---VEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHH
Confidence 356678888888999999999999999999999998765432 34555566655432 2356888899998888877
Q ss_pred hchhhhhhhHHHHHHHH
Q 001249 579 VGKDKFRDDAKQVMEVL 595 (1114)
Q Consensus 579 ~~~~~f~~~~~~i~~~l 595 (1114)
+..+.=.+++.+++..|
T Consensus 120 f~~~~~l~~i~~~Y~~L 136 (226)
T 3zyq_A 120 FRNEPKYKVVQDTYQIM 136 (226)
T ss_dssp TTTCGGGHHHHHHHHHH
T ss_pred hCCCcchHHHHHHHHHH
Confidence 75332123344444433
No 155
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=67.83 E-value=28 Score=30.57 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCc
Q 001249 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1114)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1114)
..-+...+..|+.....++..+.|++.. .++.+.++..+.+.+.. ..+.-|......+..++.++..
T Consensus 7 e~~l~~~L~~L~~s~~sI~~~s~w~l~h----------~~~a~~Iv~~i~~~l~~-~~~~~KL~~LYL~ndIl~ns~~ 73 (132)
T 4flb_A 7 ESSLDRKFQSVTNTMESIQGLSSWCIEN----------KKHHSTIVYHWMKWLRR-SAYPHRLNLFYLANDVIQNCKR 73 (132)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHT----------GGGHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCcccHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHhcc
Confidence 3445555667788888899888888854 24556777777777776 5677788889999999988754
No 156
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=66.67 E-value=34 Score=30.26 Aligned_cols=74 Identities=19% Similarity=0.087 Sum_probs=51.6
Q ss_pred cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhc-----CCC------CChhHHHHHHHH
Q 001249 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-----FRD------PHPRVRWAAINA 441 (1114)
Q Consensus 373 ~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~-----l~d------~~~~vr~~a~~~ 441 (1114)
..+..++++|...+++.+|.++.-++.+|..++...++.+...+..-...|-.+ ..| ....||..|-.+
T Consensus 45 ~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 45 SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 456778899999999999999999999999998766655554444333333222 212 235789888888
Q ss_pred HHHhH
Q 001249 442 IGQLS 446 (1114)
Q Consensus 442 l~~l~ 446 (1114)
+..+.
T Consensus 125 ~~ll~ 129 (140)
T 1vdy_A 125 ISAIF 129 (140)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77654
No 157
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=66.34 E-value=54 Score=33.22 Aligned_cols=140 Identities=12% Similarity=0.110 Sum_probs=72.7
Q ss_pred ChhhHHHHHHHHHHhhhh--hhhhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCcchHhHHHhhHHHHH
Q 001249 156 SVKLQESAFLIFAQLSQY--IGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMM 233 (1114)
Q Consensus 156 ~~~~r~~al~~l~~l~~~--~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~p~ll 233 (1114)
+...-+.++..|-.+.-+ +|..+..+--.++.-+. +.... ++.+|..|.++++++++.-+ ...+.+...+|.++
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP--~Al~~V~~~~p~fv 116 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNP--PVVEFINESFPNFK 116 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCH--HHHHHHHHHCTTHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCH--HHHHHHHHhChhHH
Confidence 344556677776666654 34444442222333333 33333 67899999999999987632 22222333445566
Q ss_pred HHHHHHHhC-------CCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHH
Q 001249 234 RTLTESLNN-------GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1114)
Q Consensus 234 ~~l~~~~~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1114)
..++..+.. ......+..+.++..|+.....+-...+..+...+ .. . ..+..++..+++++..+-.
T Consensus 117 ~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~~~~m~~L~~ly-~~-~--~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 117 SKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLPIYSTVVLQNVY-ER-N--NKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--CCHHHHHHHH-HH-T--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhhhccHHHHHHHH-cc-C--CCCHHHHHHHHHHHHHHcc
Confidence 555543321 23355666777777777654222111222333322 11 1 2356677777776665543
No 158
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=63.49 E-value=63 Score=28.81 Aligned_cols=74 Identities=7% Similarity=0.003 Sum_probs=47.6
Q ss_pred hhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001249 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1114)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l 530 (1114)
.+.+.++..+.+.+.. ..+.-+..+...+..++.+++.....-+-..+.+.+.......+..+|......+..-
T Consensus 39 ~~a~~Iv~~i~~~i~k-~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W 112 (144)
T 1sz9_A 39 SCAQYFVDAIESRIEK-CMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLW 112 (144)
T ss_dssp GGHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-CCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5677888888888876 6788889999999999999875422112222333333444445566666655555443
No 159
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=63.24 E-value=32 Score=30.41 Aligned_cols=93 Identities=14% Similarity=0.227 Sum_probs=60.4
Q ss_pred HHHHHHhHhhhhhhhhhHhHHHHHHHhccCCChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhhc---CCC--CC
Q 001249 905 IFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIR---HPN--AL 979 (1114)
Q Consensus 905 ~l~~~~~~~~~~~~~~~~~i~~~ll~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l~---~~~--~~ 979 (1114)
.+.++++..-..-...+..++..+++.+++.++.++.-|...|-.++.++.+.|...+..=...+..... .++ .-
T Consensus 31 lm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G 110 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKG 110 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTS
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccc
Confidence 4555554432211234578999999999999999999999999999999887766655544444433332 111 11
Q ss_pred ChhhhhhHHHHHHHHHHH
Q 001249 980 QPENLMAYDNAVSALGKI 997 (1114)
Q Consensus 980 ~~~~~~~~~na~~al~~l 997 (1114)
.+-+..||+.|-.++.-|
T Consensus 111 ~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 111 DALNKAVRETAHETISAI 128 (140)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 233577888777776544
No 160
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=63.13 E-value=61 Score=29.44 Aligned_cols=79 Identities=13% Similarity=0.087 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHhhhhhhhhhH--hhhhHH-HHHHHhhccCccchhhhHHHHHHHHHHH
Q 001249 501 LDGIVSKLLVLLQ-NGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPF-LKAILVNATDKSNRMLRAKSMECISLVG 576 (1114)
Q Consensus 501 l~~il~~L~~~l~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~-L~~~l~~~~~~~~~~lr~~a~~~l~~i~ 576 (1114)
-...+..|.+-++ +.++.++-.|+..+..++..+|..|...+ ..++.. |...+....+ ....+|.++++.+...+
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~-~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNN-PPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTC-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHHHH
Confidence 3456777888887 47889999999999999999998876533 235554 5555533222 23468899999998888
Q ss_pred HHhc
Q 001249 577 MAVG 580 (1114)
Q Consensus 577 ~~~~ 580 (1114)
.+++
T Consensus 130 ~~f~ 133 (157)
T 1elk_A 130 DAFR 133 (157)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 7765
No 161
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=62.68 E-value=60 Score=31.55 Aligned_cols=77 Identities=10% Similarity=0.095 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhhhhH--hhhhHHHHHHHhhccCccchhhhHHHHHHHHHHHHH
Q 001249 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1114)
Q Consensus 501 l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~i~~~ 578 (1114)
-...+..|.+-+++.++.++..|+..+..++...|..|...+ ..++..|..++.+. ....+|.++++.+...+.+
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~---~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST---PHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHHH
Confidence 446677788888899999999999999999999998775433 23566666665442 2456888888888888776
Q ss_pred hc
Q 001249 579 VG 580 (1114)
Q Consensus 579 ~~ 580 (1114)
++
T Consensus 117 f~ 118 (220)
T 1dvp_A 117 FR 118 (220)
T ss_dssp TT
T ss_pred hc
Confidence 65
No 162
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=62.06 E-value=89 Score=32.08 Aligned_cols=101 Identities=15% Similarity=0.088 Sum_probs=62.8
Q ss_pred ChhHHHHHHHHHHHHHhhcH--HHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHh
Q 001249 390 EWQKHHAALIALAQIAEGCA--KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1114)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~--~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~ 467 (1114)
.+..+..++.++..+..... ..+..+...+++.+...+.++++.+|-++...+-.++-.....-..+....++..+..
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~ 240 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIST 240 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 34556666777766655432 3445677889999888888899999999988888877654321100122334444444
Q ss_pred hccCCCChhHHHHHHHHHHHhhh
Q 001249 468 AMDDFQNPRVQAHAASAVLNFSE 490 (1114)
Q Consensus 468 ~l~~~~~~~v~~~a~~al~~l~~ 490 (1114)
.++...+.+...++..||++++.
T Consensus 241 il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 241 ILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHhccCCHHHHHHHHHHHHHHHh
Confidence 44433456666667777777663
No 163
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=59.08 E-value=1.9e+02 Score=30.76 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=24.8
Q ss_pred HhHHHhhHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001249 222 RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (1114)
Q Consensus 222 ~~~~~~l~p~ll~~l~~~~~~~~~~~~~~~~~~l~ 256 (1114)
...|......+.+.+..++.+++..++..|+..|.
T Consensus 329 ~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 329 PSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 45566677777777777887777777777766653
No 164
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=52.88 E-value=45 Score=32.45 Aligned_cols=95 Identities=11% Similarity=0.093 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHhHhhhhhhhhhHhHHHHHHHhcc
Q 001249 854 EEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN 933 (1114)
Q Consensus 854 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~~~~i~~~ll~~l~ 933 (1114)
+.+.+..+.+++.+++..+..+.++ +.... .+.+.-.|.+|+... +.... ..+.+.+++.+-..+.
T Consensus 104 Wd~~D~~a~~~~~~~~~~~~~~~~~-------i~~W~-~s~~~w~rR~ai~~~---l~~~~---~~~~~~~~~i~~~~~~ 169 (220)
T 2b6c_A 104 WDSVDAWRKFFGSWVALHLTELPTI-------FALFY-GAENFWNRRVALNLQ---LMLKE---KTNQDLLKKAIIYDRT 169 (220)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGHHHH-------HHHHT-TCSSHHHHHHHHHTT---TTCGG---GCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHChHHHHHH-------HHHHH-cCCCHHHHHHHHHHH---HHHHH---CCCHHHHHHHHHHhCC
Confidence 4555555566777777666554332 22222 455555666665422 11211 2355677787777899
Q ss_pred CCChhHHhhhhHHHHHHHhhcCCCchHHH
Q 001249 934 DENQDVRQAAVYGLGVCAEFGGSVVKPLV 962 (1114)
Q Consensus 934 ~~~~~vr~~a~~~lg~l~~~~~~~~~~~~ 962 (1114)
|++..|+.+..+.|..+....++.+.+|+
T Consensus 170 d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 170 TEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 99999999999999999988766555544
No 165
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=50.58 E-value=28 Score=34.36 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHH----HHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhc
Q 001249 376 PVASEQLPAYLAAPEWQKHHAALI----ALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 450 (1114)
Q Consensus 376 ~~l~~~l~~~l~~~~~~~r~aal~----~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1114)
|...+.+..++.|++.-.|.+|+. .+..+.. ...-...++.++..+...+.|++..|+.+..|+|..++...+
T Consensus 107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~--k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~ 183 (235)
T 1t06_A 107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGNRKD--NAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYV 183 (235)
T ss_dssp SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCG--GGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccc--cCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCH
Confidence 345667778888887666666666 3333111 111125677888888889999999999999999998886643
No 166
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=49.08 E-value=84 Score=28.28 Aligned_cols=92 Identities=9% Similarity=0.122 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCC-CChhHHHHHHHHHHHhHhhhchhHHhhh-hhhhHHH-HHhhccCC--CChhHHHHHHHHHHHhhhc
Q 001249 417 EQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPA-LAGAMDDF--QNPRVQAHAASAVLNFSEN 491 (1114)
Q Consensus 417 ~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~-l~~~l~~~--~~~~v~~~a~~al~~l~~~ 491 (1114)
...+..|.+.+.. +++.+...|+..|..+.+.++..+.... ...++.. +.+.+.+. ....|+..+...+......
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3456677777764 6888888899999999999988774332 2234443 44444431 2347999999999999988
Q ss_pred CCcccccCchHHHHHHH
Q 001249 492 CTPEILTPYLDGIVSKL 508 (1114)
Q Consensus 492 ~~~~~l~~~l~~il~~L 508 (1114)
++...=.+++..+...|
T Consensus 132 F~~~p~l~~i~~~Y~~L 148 (152)
T 3rru_A 132 FPGGVDVSEVKEVYLDL 148 (152)
T ss_dssp CSSSCCCHHHHHHHHHH
T ss_pred hCCCCcchHHHHHHHHH
Confidence 76432123444444433
No 167
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=48.61 E-value=65 Score=28.27 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=56.5
Q ss_pred hhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhh-
Q 001249 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ- 535 (1114)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~- 535 (1114)
|-+..+...+..|+. ....++..+.+++.. ..+.+.++..+...+....+.-|-..+..+..++..+.
T Consensus 4 f~~~~l~~~L~~L~~-s~~sI~~~s~w~l~~----------~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~ 72 (135)
T 4fu3_A 4 FSESALEKKLSELSN-SQQSVQTLSLWLIHH----------RKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKR 72 (135)
T ss_dssp CCHHHHHHHHHHCCS-STTHHHHHHHHHHHT----------GGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHccc-cHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHh
Confidence 344556666777776 667777777777642 13567777888887777777778889999999987663
Q ss_pred --hhhhhhHhhhhHHHHHH
Q 001249 536 --EHFQKYYDAVMPFLKAI 552 (1114)
Q Consensus 536 --~~~~~~~~~i~~~L~~~ 552 (1114)
..|.+.+...++.++..
T Consensus 73 ~~~~y~~~f~~~l~~~~~~ 91 (135)
T 4fu3_A 73 KGPEFTREFESVLVDAFSH 91 (135)
T ss_dssp TCSHHHHHHHTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 34555555555554443
No 168
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=43.12 E-value=2.4e+02 Score=27.39 Aligned_cols=154 Identities=15% Similarity=0.163 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc
Q 001249 36 NEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE 115 (1114)
Q Consensus 36 ~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~~~~~~i~~~ll~~l~~e 115 (1114)
+..|+-|-+..+.........+...+.++. ++..-+.|.+|..+++... ..++++....+.. ++ ..-
T Consensus 41 P~lR~laK~~~k~~~~~~~~~~~~~~~~L~-~~~~~E~r~~ai~~l~~~~--------k~~~~~~l~~~~~-~l---~~~ 107 (232)
T 3jxy_A 41 PERRQLLKDIIQIHTLPDQKDFQIIIRELW-DLPEREFQAAALDIMQKYK--------KHINETHIPFLEE-LI---VTK 107 (232)
T ss_dssp HHHHHHHHHHHHHHCCCCGGGHHHHHHHHH-TSSBHHHHHHHHHHHHHTG--------GGCCGGGHHHHHH-HH---TSS
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHh-cCcHHHHHHHHHHHHHHHH--------HhCCHHHHHHHHH-HH---ccC
Confidence 345555555555543311222212333333 4456779999998888532 2345555554442 22 222
Q ss_pred hhhhHHHHHH-HHHHHHHhcccCCCCchh-hHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHhh
Q 001249 116 SAKSISKKLC-DTVSELASNILPENGWPE-LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL 193 (1114)
Q Consensus 116 ~~~~vr~~~~-~~i~~ia~~~~~~~~w~~-ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 193 (1114)
.+..+...+| .+++.+... -|+ +.+.+..++.|++.-.|..|+..+- . .. .......++..+...+
T Consensus 108 ~nWd~~D~~a~~~~g~~~~~------~p~~~~~~l~~W~~s~~~w~rR~ai~~~l--~-~~---~~~d~~~~~~~i~~~~ 175 (232)
T 3jxy_A 108 SWWDSVDSIVPTFLGDIFLK------HPELISAYIPKWIASDNIWLQRAAILFQL--K-YK---QKMDEELLFWIIGQLH 175 (232)
T ss_dssp CCHHHHHHHTTTHHHHHHHH------CGGGGGGTHHHHHHSSCHHHHHHHHHTTT--T-CG---GGCCHHHHHHHHHHHT
T ss_pred CChHHHHHhhHHHHHHHHHH------CHHHHHHHHHHHhcCCchHHHHHHHHHHH--H-HH---hCCCHHHHHHHHHHhc
Confidence 4566665554 566776663 144 5677888999999888888876542 1 11 1123456666777778
Q ss_pred cCCCChHHHHHHHHHHHHHHHh
Q 001249 194 TNSNNPDVKIAALNAVINFIQC 215 (1114)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~l~~~ 215 (1114)
.++ +.-|+.+...+|..+...
T Consensus 176 ~d~-~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 176 SSK-EFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp TCC-CHHHHHHHHHHHHHHTTT
T ss_pred CCH-HHHHHHHHHHHHHHHHhh
Confidence 886 888999888888777654
No 169
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=42.89 E-value=1.8e+02 Score=25.83 Aligned_cols=70 Identities=10% Similarity=0.144 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhhcCCcccccCchHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHhhhhhhh----hhHhhhhHHHHHHH
Q 001249 479 AHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ----KYYDAVMPFLKAIL 553 (1114)
Q Consensus 479 ~~a~~al~~l~~~~~~~~l~~~l~~il~~L~~~l~~~~~~v~~~al~~l~~l~~~~~~~~~----~~~~~i~~~L~~~l 553 (1114)
...+..|..++.... .+...|+..+.+.+....+.-|-.++..+.+++...+.... +|.+.+.+.|...+
T Consensus 23 ~~~I~~LT~~a~~~~-----~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f 96 (145)
T 3d9j_A 23 KAKMTQITKAAIKAI-----KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTF 96 (145)
T ss_dssp HHHHHHHHHHHHHTG-----GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHH
Confidence 444555666555422 46778888888888888888889999999999999887322 34444444444444
No 170
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=42.28 E-value=3e+02 Score=28.15 Aligned_cols=115 Identities=12% Similarity=0.126 Sum_probs=69.0
Q ss_pred hhhHHHHHHhhcC-CChhhHHHHHHHHHHhhhhhh--hhhhhhHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCC
Q 001249 142 PELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIG--DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1114)
Q Consensus 142 ~~ll~~l~~~~~~-~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~ 218 (1114)
..++..+...+.+ ..+..+-.+++++..++..-. ..+..+.+.++..+...+.++ +..+|.++...+.++.-...+
T Consensus 146 ~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~ 224 (304)
T 3ebb_A 146 AQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHK 224 (304)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhh
Confidence 4455555555443 234456667777777765422 223446778888888887775 889999999999888776421
Q ss_pred cchHhHHHhhHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHcc
Q 001249 219 SADRDRFQDLLPLMMRTLTESLN-NGNEATAQEALELLIELAGT 261 (1114)
Q Consensus 219 ~~~~~~~~~l~p~ll~~l~~~~~-~~~~~~~~~~~~~l~~l~~~ 261 (1114)
....+. ...++..+.+.++ ..+.+....++.+++.++..
T Consensus 225 ~~~~~~----~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 225 DHNIEG----KAQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp SCCHHH----HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCchH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 111111 1123444444343 34677777777778777753
No 171
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=37.79 E-value=2e+02 Score=24.97 Aligned_cols=63 Identities=8% Similarity=0.084 Sum_probs=44.5
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCCChhHHHHHHHHHHHhhhcCC
Q 001249 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1114)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1114)
+...+..|+...+.++..+.|++.. ..+.+.++..+.+.+.. ..+.-|......+..++.++.
T Consensus 9 l~~~L~~L~~s~~sI~~~s~w~l~~----------~~~a~~iv~~i~~~l~~-~~~~~KL~~LYLindIl~ns~ 71 (135)
T 4fu3_A 9 LEKKLSELSNSQQSVQTLSLWLIHH----------RKHAGPIVSVWHRELRK-AKSNRKLTFLYLANDVIQNSK 71 (135)
T ss_dssp HHHHHHHCCSSTTHHHHHHHHHHHT----------GGGHHHHHHHHHHHHHH-SCTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccccHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHH
Confidence 3444556777888899999998854 23456677777777766 455667888888888887654
No 172
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=30.68 E-value=1.9e+02 Score=25.60 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=46.1
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHHhhhhhhhHHHHHhhccCCC-ChhHHHHHHHHHHHhhhcCC
Q 001249 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCT 493 (1114)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~ 493 (1114)
.+...+..|+.....|..++.|++.. ..+.+.++..+.+.+...+ .++-|......+..++.++.
T Consensus 7 ~l~~kL~~L~~sq~sIq~~s~W~l~h----------~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk 72 (142)
T 2km4_A 7 QFTTKLNTLEDSQESISSASKWLLLQ----------YRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAK 72 (142)
T ss_dssp HHHHHHHTCCSCHHHHHHHHHHHHTC----------GGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHh
Confidence 34455667888888899888888832 2456778888888887621 45667777888888887654
No 173
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=28.99 E-value=2.4e+02 Score=25.15 Aligned_cols=58 Identities=9% Similarity=0.125 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCCC--CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHhhh
Q 001249 1056 IVSVFAEILCGKDL--ATEQTLSRIVNLLKQLQQTLPPATLASTWSSLQPQQQLALQSIL 1113 (1114)
Q Consensus 1056 i~~~~~~~l~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 1113 (1114)
....+..+|...+. .+.+++..-..++...-..+-..++.+++.+|+++++..|++|+
T Consensus 51 ~~~ALk~~L~~pP~~~k~q~~K~~~~~~Vl~VL~siK~sdI~~~v~~L~~e~~D~LMKYi 110 (151)
T 1k8k_G 51 MTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYI 110 (151)
T ss_dssp HHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHSCGGGHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHHhChhhhhHHHHHH
Confidence 44555566653333 23456655555544444455545599999999999999999885
No 174
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=28.48 E-value=2.9e+02 Score=24.00 Aligned_cols=96 Identities=9% Similarity=-0.002 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhcCCCCChhHHHHHHHHHHHhHhhhchhHH
Q 001249 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1114)
Q Consensus 375 ~~~l~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1114)
+..++|.+..+++|.||.........|.. +-..++|.+...|+..+..=+ .|++..+...+..
T Consensus 29 i~p~lp~LL~WLQD~NWPvA~~i~~~L~~-----------~~~~l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~--- 91 (134)
T 3ut4_A 29 IEPIIFDLLKWLQDYNWPIAKDILPVVVL-----------HQSIAMPHILTILQGNDIMWK---YWVIKLMIPYLIY--- 91 (134)
T ss_dssp HHHHHHHHHGGGSCTTSTTHHHHHHHHHH-----------THHHHHHHHHHHHHSSCHHHH---HHHHHHHGGGCCH---
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHH-----------ccHhhHHHHHHHHHcCChHHH---HHHHHHHHHcCCH---
Confidence 34467778889999999877665554443 223444444444444443322 3455555544443
Q ss_pred hhhhhhhHHHHHhhccCC----CChhHHHHHHHHHHHh
Q 001249 455 NQFHPQVLPALAGAMDDF----QNPRVQAHAASAVLNF 488 (1114)
Q Consensus 455 ~~~~~~il~~l~~~l~~~----~~~~v~~~a~~al~~l 488 (1114)
.....+.+.+.+..... ....+...|-..|..+
T Consensus 92 -~~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 92 -PNKQLVKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp -HHHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 23445555665555541 1234556666665555
No 175
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=28.37 E-value=1.8e+02 Score=33.76 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001249 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1114)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~-~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l~~ 98 (1114)
++..|..+|+...=.+.+..++|.+.|..+..-+|+. -+++|.. -.++.+|++|.-.|++ .++
T Consensus 75 ~~~aL~kfL~sv~W~~~~e~~~a~~lL~~W~~~~~~d----ALeLL~~~f~~~~VR~yAV~~L~~------------~~d 138 (696)
T 2x6h_A 75 HKKALTKFLKCINWKLEDEVTQALWMLANWAPMDVED----ALELLSPTFTHPQVRKYAVSRLAQ------------APD 138 (696)
T ss_dssp CHHHHHHHGGGTTTSCHHHHHHHHHHHHHSCCCCHHH----HHHHHSTTCCCHHHHHHHHHHHHH------------SCH
T ss_pred ChhHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCHHH----HHHHhcccCCCHHHHHHHHHHHHh------------CCh
Confidence 3556666666554467778889999899887644443 4566654 5689999999999987 356
Q ss_pred HHHHHHHHHHHHHHhhch
Q 001249 99 HTQSSLKSMLLQSIQLES 116 (1114)
Q Consensus 99 ~~~~~i~~~ll~~l~~e~ 116 (1114)
+......-+|.|+|.-|.
T Consensus 139 e~L~~YLlQLVQALKyE~ 156 (696)
T 2x6h_A 139 EDLLLYLLQLVQALKYED 156 (696)
T ss_dssp HHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 777777788899998873
No 176
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=27.24 E-value=1.7e+02 Score=26.33 Aligned_cols=78 Identities=10% Similarity=0.031 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHhhhhhhhhhHh--hhhHH-HHHHHhhccCccchhhhHHHHHHHHHHHH
Q 001249 502 DGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQEHFQKYYD--AVMPF-LKAILVNATDKSNRMLRAKSMECISLVGM 577 (1114)
Q Consensus 502 ~~il~~L~~~l~~-~~~~v~~~al~~l~~l~~~~~~~~~~~~~--~i~~~-L~~~l~~~~~~~~~~lr~~a~~~l~~i~~ 577 (1114)
...+..|.+-++. .++.+...|+..+..++..+|..|...+. .++.- |..++.... .....+|.++++.+...+.
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~-~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRY-NLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGG-CCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHHHH
Confidence 4566777777764 57777788999999999999987754332 23331 333332211 1223588888888888887
Q ss_pred Hhc
Q 001249 578 AVG 580 (1114)
Q Consensus 578 ~~~ 580 (1114)
+++
T Consensus 131 ~F~ 133 (152)
T 3rru_A 131 GFP 133 (152)
T ss_dssp CCS
T ss_pred HhC
Confidence 665
No 177
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=24.73 E-value=3.6e+02 Score=23.72 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=62.6
Q ss_pred hCCChHHHHHHHHHHcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCC
Q 001249 17 LGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRL 96 (1114)
Q Consensus 17 ~~~~~~~l~~ll~~~~s~d~~~r~~Ae~~L~~~~~~~p~~~~~~L~~il~~~~~~~~R~~A~~~Lk~~l~~~~~~~w~~l 96 (1114)
|+-+.+.|...|..+. +..+.++.+..++-.-.+ ..+..+..+.+-+.....+.-++++.++|-|-+-.+... +-
T Consensus 1 m~fs~~~l~~kL~~L~-~sq~sIq~~s~W~l~h~~-~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~---k~ 75 (142)
T 2km4_A 1 MAFSSEQFTTKLNTLE-DSQESISSASKWLLLQYR-DAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKG---QK 75 (142)
T ss_dssp -CCCHHHHHHHHHTCC-SCHHHHHHHHHHHHTCGG-GHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGG---GT
T ss_pred CCCCHHHHHHHHHhcc-ccHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhh---cC
Confidence 3457789999998875 566777777777766544 344456777777766544566778888777765443100 01
Q ss_pred CHHHHHHHHHHHHHHHhh---chhhhHHHHHHHHHHHH
Q 001249 97 SLHTQSSLKSMLLQSIQL---ESAKSISKKLCDTVSEL 131 (1114)
Q Consensus 97 ~~~~~~~i~~~ll~~l~~---e~~~~vr~~~~~~i~~i 131 (1114)
.++....+...|.+.+.. ..++..++.+..++...
T Consensus 76 ~~~f~~~F~~~L~~~~~~~~~~~~~~~~~kv~rvl~iW 113 (142)
T 2km4_A 76 IIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNIL 113 (142)
T ss_dssp CCHHHHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 123333443333333321 13455666655555544
No 178
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=23.86 E-value=8.5e+02 Score=27.79 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=37.3
Q ss_pred hhHhHHHHHHHhccCC--ChhHHhhhhHHHHHHHhhcCCCchHHHHHHHHHHHHhh
Q 001249 920 YYETYLPFLLEACNDE--NQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVI 973 (1114)
Q Consensus 920 ~~~~i~~~ll~~l~~~--~~~vr~~a~~~lg~l~~~~~~~~~~~~~~~l~~L~~~l 973 (1114)
+...++..+++.+.++ .+.+|++|+.=||.++..++..-..++..++..|...+
T Consensus 417 ~~~~Fl~~L~~~~~~~~~~~~~RqaAaaYLaSflARAk~v~~~~v~~vl~~L~~wl 472 (649)
T 3tj1_A 417 LMDSFLVTLIDISFAVNEAAEKKIKSLQYLGSYIARAKKLSRTQIIFVASYLTSWL 472 (649)
T ss_dssp HHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHBTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4455566666655554 46899999988999988887665566666666666554
No 179
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=23.51 E-value=3e+02 Score=24.38 Aligned_cols=88 Identities=7% Similarity=0.129 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcccCCCCchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhhh-------hhhhhH-HHHHHHHHHhhc
Q 001249 123 KLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD-------TLTPHL-KHLHAVFLNCLT 194 (1114)
Q Consensus 123 ~~~~~i~~ia~~~~~~~~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~-------~~~~~~-~~l~~~l~~~l~ 194 (1114)
.....++.+|.... ..-..++..+.+.+....+..|-.+++++..|+...+. .+.+.+ ..+.+.|.....
T Consensus 24 ~~I~~LT~~a~~~~--~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~ 101 (145)
T 3d9j_A 24 AKMTQITKAAIKAI--KFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYR 101 (145)
T ss_dssp HHHHHHHHHHHHTG--GGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHh
Confidence 33444555554211 23466777777777767788999999999999998775 333333 344444444443
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 001249 195 NSNNPDVKIAALNAVINFIQ 214 (1114)
Q Consensus 195 ~~~~~~vr~~a~~~l~~l~~ 214 (1114)
. ++..|....+.+..+-+
T Consensus 102 -~-~~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 102 -C-PGDDKSKIVRVLNLWQK 119 (145)
T ss_dssp -S-CGGGHHHHHHHHHHHHH
T ss_pred -C-CHHHHHHHHHHHHHhcC
Confidence 3 46778777776665543
No 180
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=20.71 E-value=7.6e+02 Score=26.06 Aligned_cols=100 Identities=10% Similarity=0.100 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHHHhcccCCC---CchhhHHHHHHhhcCCChhhHHHHHHHHHHhhhhhh-hh-hhhhH---HHH----
Q 001249 118 KSISKKLCDTVSELASNILPEN---GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-DT-LTPHL---KHL---- 185 (1114)
Q Consensus 118 ~~vr~~~~~~i~~ia~~~~~~~---~w~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~-~~-~~~~~---~~l---- 185 (1114)
..+...+..|+..+........ .-|+.+..+..++.++.+.+|..++.+|..+|...+ +. ....+ ..+
T Consensus 134 ~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~ 213 (383)
T 3eg5_B 134 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 213 (383)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhC
Confidence 3556667788887755321100 346788999999999999999999999999987543 11 11111 111
Q ss_pred ----HHHHHHhhcCCCChHHHHHHHHHHHHHHHhcC
Q 001249 186 ----HAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1114)
Q Consensus 186 ----~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 217 (1114)
+..+...|.+..+.+.+.+++..+..++...+
T Consensus 214 e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 214 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred CCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC
Confidence 23345556653367777777777777776543
Done!