BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001250
         (1114 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
 pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
          Length = 148

 Score = 38.1 bits (87), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 382 TSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSD 433
           +SDPYVT+ V G    RT  I  + +PVW+++F+    +S+  +   V D D
Sbjct: 37  SSDPYVTVQV-GKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDED 87


>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
           Responsive Gene
          Length = 136

 Score = 35.8 bits (81), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 22/118 (18%)

Query: 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNS 405
           HG L++ + SAK L + D  +                 DPYV +                
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNM---------------DPYVQLTCRTQDQKSNVAEGMG 53

Query: 406 EDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSE--LIGTVAIPVEQIYSGGKVEGTYP 461
             P W + F   V+    E+   + D D VG+E   +G   IP+E ++    VEG+ P
Sbjct: 54  TTPEWNETFIFTVSEGTTELKAKIFDKD-VGTEDDAVGEATIPLEPVF----VEGSIP 106


>pdb|2LP1|A Chain A, The Solution Nmr Structure Of The Transmembrane C-Terminal
           Domain Of The Amyloid Precursor Protein (C99)
          Length = 122

 Score = 32.3 bits (72), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 22/79 (27%)

Query: 665 HHQKTVIVDADAGYNRRKIIAF-VGGLDLC-----------DGRYDNPHH---------- 702
           HHQK V    D G N+  II   VGG+ +              +Y + HH          
Sbjct: 14  HHQKLVFFAEDVGSNKGAIIGLMVGGVVIATVIVITLVMLKKKQYTSIHHGVVEVDAAVT 73

Query: 703 PLFRTLQTLHKDDYHNPTF 721
           P  R L  + ++ Y NPT+
Sbjct: 74  PEERHLSKMQQNGYENPTY 92


>pdb|3QEH|A Chain A, Crystal Structure Of Human N12-I15, An Adcc And
           Non-Neutralizing Anti- Hiv-1 Env Antibody
 pdb|3QEH|C Chain C, Crystal Structure Of Human N12-I15, An Adcc And
           Non-Neutralizing Anti- Hiv-1 Env Antibody
 pdb|3QEH|E Chain E, Crystal Structure Of Human N12-I15, An Adcc And
           Non-Neutralizing Anti- Hiv-1 Env Antibody
 pdb|3QEH|G Chain G, Crystal Structure Of Human N12-I15, An Adcc And
           Non-Neutralizing Anti- Hiv-1 Env Antibody
          Length = 232

 Score = 30.8 bits (68), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 9/61 (14%)

Query: 471 KPGATLTLSIQYTPMERLSFY----HRGVGEGPDYNGVPG-----TYFPLRKGGKVTLYQ 521
           KPGA++T+S + +    ++FY     +  G+G ++ GV       TYF  +  G+VTL +
Sbjct: 13  KPGASVTVSCKTSGYTFVNFYIVWVRQAPGQGLEWMGVINPFRGDTYFAQKFKGRVTLTR 72

Query: 522 D 522
           D
Sbjct: 73  D 73


>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
           Ubiquitin-Protein Ligase Nedd4-Like Protein
          Length = 155

 Score = 30.4 bits (67), Expect = 5.7,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 383 SDPYVTIAVAGAVVGR------TFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSD-VV 435
           SDPYV +++  A   R      T  I  + +P W + FY  V  S   + F V D + + 
Sbjct: 42  SDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVFDENRLT 101

Query: 436 GSELIGTVAIPVEQI 450
             + +G V +P+  +
Sbjct: 102 RDDFLGQVDVPLSHL 116


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.135    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,675,465
Number of Sequences: 62578
Number of extensions: 1545462
Number of successful extensions: 3166
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3165
Number of HSP's gapped (non-prelim): 7
length of query: 1114
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1005
effective length of database: 8,152,335
effective search space: 8193096675
effective search space used: 8193096675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)