Query 001250
Match_columns 1114
No_of_seqs 607 out of 3194
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 19:51:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 1E-185 3E-190 1647.8 68.0 774 337-1114 4-868 (868)
2 PLN02270 phospholipase D alpha 100.0 3E-176 6E-181 1569.4 64.3 752 343-1114 4-808 (808)
3 PLN02352 phospholipase D epsil 100.0 5E-167 1E-171 1488.6 62.9 706 342-1114 5-758 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 2E-149 3E-154 1330.2 51.8 736 336-1114 65-853 (887)
5 PLN02866 phospholipase D 100.0 2.2E-94 4.7E-99 875.6 50.3 513 506-1093 321-1059(1068)
6 PRK12452 cardiolipin synthetas 100.0 1E-47 2.2E-52 457.5 35.5 332 507-1004 132-464 (509)
7 PRK01642 cls cardiolipin synth 100.0 1.7E-46 3.8E-51 445.4 36.3 329 507-1004 108-438 (483)
8 PRK11263 cardiolipin synthase 100.0 1.2E-44 2.7E-49 420.4 34.4 341 510-1031 3-344 (411)
9 COG1502 Cls Phosphatidylserine 100.0 2.6E-34 5.6E-39 336.5 33.0 332 512-1004 57-393 (438)
10 PRK09428 pssA phosphatidylseri 100.0 4.8E-31 1.1E-35 309.3 31.3 350 509-1006 20-396 (451)
11 PHA02820 phospholipase-D-like 100.0 3.7E-31 8E-36 309.1 29.1 316 546-1003 27-360 (424)
12 PHA03003 palmytilated EEV memb 100.0 9.7E-31 2.1E-35 301.4 28.3 317 545-1004 31-347 (369)
13 PLN02230 phosphoinositide phos 99.9 1.5E-27 3.3E-32 284.1 11.7 178 285-482 374-597 (598)
14 KOG0169 Phosphoinositide-speci 99.9 2.1E-27 4.5E-32 281.9 9.9 177 286-484 524-745 (746)
15 PLN02223 phosphoinositide phos 99.9 1.1E-26 2.4E-31 272.1 14.8 175 287-482 316-536 (537)
16 PLN02222 phosphoinositide phos 99.9 5E-26 1.1E-30 270.8 13.2 178 285-482 357-580 (581)
17 cd04015 C2_plant_PLD C2 domain 99.9 3.2E-25 6.9E-30 227.4 15.8 142 342-483 2-158 (158)
18 PLN02952 phosphoinositide phos 99.9 1.7E-25 3.6E-30 267.2 12.6 178 285-482 375-598 (599)
19 PF12357 PLD_C: Phospholipase 99.9 1.2E-25 2.7E-30 198.4 5.6 73 1034-1106 2-74 (74)
20 PLN02228 Phosphoinositide phos 99.9 8.8E-25 1.9E-29 259.6 12.4 181 285-485 339-563 (567)
21 KOG1264 Phospholipase C [Lipid 99.9 8.4E-23 1.8E-27 239.3 12.0 176 286-488 972-1194(1267)
22 cd04016 C2_Tollip C2 domain pr 99.9 7.1E-21 1.5E-25 187.2 14.7 118 346-482 1-121 (121)
23 cd04013 C2_SynGAP_like C2 doma 99.8 4.5E-20 9.9E-25 186.8 14.9 125 345-489 9-145 (146)
24 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.1E-19 2.4E-24 180.0 13.9 114 349-478 2-125 (126)
25 cd04042 C2A_MCTP_PRT C2 domain 99.8 5.7E-19 1.2E-23 172.4 15.3 119 349-484 2-121 (121)
26 cd08682 C2_Rab11-FIP_classI C2 99.8 3.7E-19 8.1E-24 175.1 12.9 117 349-481 1-126 (126)
27 cd08400 C2_Ras_p21A1 C2 domain 99.8 6.5E-18 1.4E-22 166.9 15.6 120 347-485 4-125 (126)
28 cd04019 C2C_MCTP_PRT_plant C2 99.8 4.5E-18 9.7E-23 173.3 14.3 122 349-486 2-135 (150)
29 cd08681 C2_fungal_Inn1p-like C 99.8 4.6E-18 9.9E-23 164.9 11.5 116 347-482 1-118 (118)
30 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 9.7E-18 2.1E-22 164.7 13.8 119 349-482 2-121 (121)
31 cd04022 C2A_MCTP_PRT_plant C2 99.7 1.2E-17 2.6E-22 164.6 13.0 120 348-484 1-127 (127)
32 PRK05443 polyphosphate kinase; 99.7 1.1E-16 2.3E-21 196.2 23.5 266 545-1005 348-633 (691)
33 cd08377 C2C_MCTP_PRT C2 domain 99.7 5.7E-17 1.2E-21 157.2 14.1 118 347-483 1-119 (119)
34 cd08378 C2B_MCTP_PRT_plant C2 99.7 3.1E-17 6.6E-22 161.2 12.2 113 349-483 2-120 (121)
35 cd08678 C2_C21orf25-like C2 do 99.7 5.5E-17 1.2E-21 159.9 14.1 122 349-487 1-124 (126)
36 TIGR03705 poly_P_kin polyphosp 99.7 1.8E-16 3.9E-21 193.4 20.6 265 545-1004 339-623 (672)
37 cd04044 C2A_Tricalbin-like C2 99.7 5.4E-17 1.2E-21 158.1 13.0 121 347-484 2-124 (124)
38 cd08391 C2A_C2C_Synaptotagmin_ 99.7 6E-17 1.3E-21 157.1 13.0 120 347-482 1-121 (121)
39 cd04014 C2_PKC_epsilon C2 doma 99.7 1E-16 2.2E-21 159.1 14.7 126 344-484 1-130 (132)
40 cd04036 C2_cPLA2 C2 domain pre 99.7 9.6E-17 2.1E-21 156.4 13.1 113 349-482 2-117 (119)
41 cd04024 C2A_Synaptotagmin-like 99.7 1.2E-16 2.7E-21 156.6 13.7 120 347-482 1-128 (128)
42 cd08376 C2B_MCTP_PRT C2 domain 99.7 2.7E-16 5.8E-21 152.1 14.4 112 349-483 2-115 (116)
43 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.6E-16 5.7E-21 154.2 13.8 117 349-481 2-120 (121)
44 KOG1265 Phospholipase C [Lipid 99.7 2E-17 4.3E-22 196.7 6.4 162 278-471 600-812 (1189)
45 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2.3E-16 5E-21 156.2 13.0 120 348-483 1-133 (133)
46 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 3.2E-16 6.9E-21 153.4 13.3 117 349-481 2-123 (123)
47 cd08395 C2C_Munc13 C2 domain t 99.7 1.9E-16 4.2E-21 155.6 11.6 100 348-463 1-111 (120)
48 cd08373 C2A_Ferlin C2 domain f 99.7 4.8E-16 1E-20 153.2 14.0 117 353-489 2-122 (127)
49 cd04046 C2_Calpain C2 domain p 99.7 1.1E-15 2.3E-20 151.0 15.5 121 346-484 2-123 (126)
50 KOG1030 Predicted Ca2+-depende 99.7 1.7E-16 3.6E-21 161.5 9.5 97 343-455 2-99 (168)
51 cd04050 C2B_Synaptotagmin-like 99.7 4.5E-16 9.9E-21 148.6 11.5 98 349-464 2-102 (105)
52 cd08381 C2B_PI3K_class_II C2 d 99.7 3.6E-16 7.8E-21 153.8 10.9 102 345-462 11-121 (122)
53 cd08375 C2_Intersectin C2 doma 99.7 1.2E-15 2.6E-20 153.0 14.2 114 347-482 15-135 (136)
54 cd08688 C2_KIAA0528-like C2 do 99.7 4.1E-16 8.9E-21 150.2 10.2 101 349-464 1-109 (110)
55 cd08685 C2_RGS-like C2 domain 99.6 3.5E-16 7.6E-21 153.4 9.4 102 345-462 10-119 (119)
56 cd08387 C2A_Synaptotagmin-8 C2 99.6 8.1E-16 1.7E-20 150.8 11.4 103 346-463 15-123 (124)
57 cd08382 C2_Smurf-like C2 domai 99.6 2.3E-15 4.9E-20 148.0 12.4 116 349-480 2-122 (123)
58 cd04045 C2C_Tricalbin-like C2 99.6 1.9E-15 4.2E-20 148.2 11.8 104 347-466 1-105 (120)
59 cd08385 C2A_Synaptotagmin-1-5- 99.6 1.9E-15 4.2E-20 148.0 11.6 103 346-463 15-123 (124)
60 cd04010 C2B_RasA3 C2 domain se 99.6 1.7E-15 3.7E-20 154.1 11.6 104 348-468 1-126 (148)
61 cd04028 C2B_RIM1alpha C2 domai 99.6 1.8E-15 4E-20 153.5 11.6 108 344-466 26-140 (146)
62 cd04041 C2A_fungal C2 domain f 99.6 1.6E-15 3.5E-20 146.3 10.3 99 347-463 1-107 (111)
63 cd04029 C2A_SLP-4_5 C2 domain 99.6 2.6E-15 5.5E-20 148.4 11.8 104 346-463 14-125 (125)
64 cd04051 C2_SRC2_like C2 domain 99.6 1.5E-15 3.3E-20 148.9 10.1 113 348-478 1-125 (125)
65 cd04027 C2B_Munc13 C2 domain s 99.6 4.1E-15 9E-20 147.0 12.9 114 348-480 2-127 (127)
66 cd08394 C2A_Munc13 C2 domain f 99.6 3.4E-15 7.4E-20 147.6 12.1 97 347-463 2-100 (127)
67 cd04018 C2C_Ferlin C2 domain t 99.6 1.9E-15 4.1E-20 154.3 10.2 114 348-464 1-125 (151)
68 cd08393 C2A_SLP-1_2 C2 domain 99.6 2.3E-15 5E-20 148.6 10.3 102 347-463 15-125 (125)
69 cd08677 C2A_Synaptotagmin-13 C 99.6 2.8E-15 6.1E-20 146.7 10.2 99 346-462 13-118 (118)
70 cd04030 C2C_KIAA1228 C2 domain 99.6 3.9E-15 8.5E-20 146.1 11.1 102 347-463 16-127 (127)
71 cd04043 C2_Munc13_fungal C2 do 99.6 1.2E-14 2.7E-19 142.5 14.0 114 348-484 2-122 (126)
72 cd04017 C2D_Ferlin C2 domain f 99.6 1.7E-14 3.8E-19 144.0 15.1 118 348-485 2-134 (135)
73 cd08383 C2A_RasGAP C2 domain ( 99.6 1.7E-14 3.7E-19 139.3 14.2 112 349-482 2-117 (117)
74 cd04040 C2D_Tricalbin-like C2 99.6 8.8E-15 1.9E-19 141.2 12.1 105 349-468 1-107 (115)
75 cd04031 C2A_RIM1alpha C2 domai 99.6 6.9E-15 1.5E-19 143.8 11.1 101 347-463 16-125 (125)
76 cd08386 C2A_Synaptotagmin-7 C2 99.6 9.1E-15 2E-19 143.3 11.6 102 347-463 16-124 (125)
77 cd04052 C2B_Tricalbin-like C2 99.6 8.3E-15 1.8E-19 141.5 11.1 98 382-485 12-111 (111)
78 cd04049 C2_putative_Elicitor-r 99.6 9.2E-15 2E-19 143.3 11.2 102 347-464 1-108 (124)
79 cd04039 C2_PSD C2 domain prese 99.6 1E-14 2.2E-19 140.8 11.1 96 347-454 1-99 (108)
80 cd08521 C2A_SLP C2 domain firs 99.6 1.3E-14 2.7E-19 141.6 11.0 102 346-462 13-123 (123)
81 cd08392 C2A_SLP-3 C2 domain fi 99.6 1.1E-14 2.3E-19 144.8 10.2 102 346-462 14-127 (128)
82 cd04011 C2B_Ferlin C2 domain s 99.6 2.1E-14 4.6E-19 138.4 11.9 97 348-464 5-110 (111)
83 cd08676 C2A_Munc13-like C2 dom 99.6 1.2E-14 2.7E-19 148.6 10.2 98 346-462 27-153 (153)
84 cd00275 C2_PLC_like C2 domain 99.6 5E-14 1.1E-18 138.0 13.9 117 348-483 3-128 (128)
85 cd08384 C2B_Rabphilin_Doc2 C2 99.6 9.2E-15 2E-19 145.0 8.8 108 346-470 12-127 (133)
86 cd08680 C2_Kibra C2 domain fou 99.5 2.1E-14 4.5E-19 142.1 10.1 102 346-462 13-124 (124)
87 cd08690 C2_Freud-1 C2 domain f 99.5 6E-14 1.3E-18 143.7 13.8 118 349-484 4-138 (155)
88 cd08390 C2A_Synaptotagmin-15-1 99.5 4.6E-14 1E-18 137.8 11.7 103 346-463 13-122 (123)
89 cd08404 C2B_Synaptotagmin-4 C2 99.5 2.4E-14 5.2E-19 143.0 9.5 108 346-470 14-129 (136)
90 cd08388 C2A_Synaptotagmin-4-11 99.5 7.2E-14 1.6E-18 138.7 12.8 103 347-463 16-127 (128)
91 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.9E-14 4.2E-19 143.2 8.5 109 345-470 12-128 (134)
92 cd08402 C2B_Synaptotagmin-1 C2 99.5 2.3E-14 4.9E-19 143.0 7.8 109 345-470 13-129 (136)
93 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 4.7E-14 1E-18 145.6 10.3 104 345-463 25-137 (162)
94 cd04032 C2_Perforin C2 domain 99.5 6.3E-14 1.4E-18 139.2 10.6 88 347-451 28-118 (127)
95 cd08389 C2A_Synaptotagmin-14_1 99.5 6.6E-14 1.4E-18 138.1 10.5 101 347-463 16-123 (124)
96 cd08406 C2B_Synaptotagmin-12 C 99.5 3.6E-14 7.8E-19 142.5 8.4 108 346-470 14-129 (136)
97 cd00276 C2B_Synaptotagmin C2 d 99.5 3.5E-14 7.6E-19 140.2 8.0 107 347-470 14-128 (134)
98 cd08675 C2B_RasGAP C2 domain s 99.5 8.2E-14 1.8E-18 140.0 10.7 101 349-465 1-121 (137)
99 cd04026 C2_PKC_alpha_gamma C2 99.5 7.2E-14 1.6E-18 138.3 10.2 107 344-466 10-123 (131)
100 cd08405 C2B_Synaptotagmin-7 C2 99.5 4E-14 8.6E-19 141.3 8.4 108 346-470 14-129 (136)
101 cd08407 C2B_Synaptotagmin-13 C 99.5 3.7E-14 8E-19 142.8 7.4 110 346-470 14-131 (138)
102 cd04038 C2_ArfGAP C2 domain pr 99.5 1.4E-13 3E-18 139.8 11.1 91 347-454 2-93 (145)
103 cd08410 C2B_Synaptotagmin-17 C 99.5 7E-14 1.5E-18 139.8 7.8 108 347-470 14-129 (135)
104 cd04021 C2_E3_ubiquitin_ligase 99.5 4.3E-13 9.3E-18 132.5 13.0 115 348-480 3-124 (125)
105 cd04009 C2B_Munc13-like C2 dom 99.5 1.4E-13 3E-18 137.2 9.6 91 347-452 16-118 (133)
106 cd04048 C2A_Copine C2 domain f 99.5 2.2E-13 4.8E-18 133.1 10.4 98 352-464 5-114 (120)
107 KOG0696 Serine/threonine prote 99.5 2.1E-14 4.6E-19 161.3 3.5 106 347-468 180-293 (683)
108 cd04037 C2E_Ferlin C2 domain f 99.5 3.7E-13 8.1E-18 132.7 11.9 89 349-452 2-93 (124)
109 cd00138 PLDc Phospholipase D. 99.4 1.1E-12 2.3E-17 135.4 15.0 143 546-759 22-169 (176)
110 cd08692 C2B_Tac2-N C2 domain s 99.4 2.3E-13 5.1E-18 136.2 9.2 109 346-470 13-129 (135)
111 cd08409 C2B_Synaptotagmin-15 C 99.4 1.5E-13 3.2E-18 138.0 7.6 108 347-470 15-130 (137)
112 cd04035 C2A_Rabphilin_Doc2 C2 99.4 8.4E-13 1.8E-17 129.3 11.6 100 347-461 15-122 (123)
113 cd08691 C2_NEDL1-like C2 domai 99.4 1.4E-12 3.1E-17 131.2 12.9 114 349-480 3-136 (137)
114 PLN03200 cellulose synthase-in 99.4 4.5E-13 9.8E-18 176.6 11.3 122 345-484 1978-2101(2102)
115 cd08686 C2_ABR C2 domain in th 99.4 2.3E-12 5.1E-17 126.1 11.9 79 349-448 1-91 (118)
116 cd08408 C2B_Synaptotagmin-14_1 99.4 6.4E-13 1.4E-17 133.8 7.8 109 346-470 14-131 (138)
117 PHA02820 phospholipase-D-like 99.3 1E-11 2.2E-16 146.3 15.9 145 800-1002 5-150 (424)
118 KOG1028 Ca2+-dependent phospho 99.3 4.4E-12 9.5E-17 149.1 12.7 126 346-486 166-297 (421)
119 KOG1011 Neurotransmitter relea 99.3 1.6E-12 3.4E-17 150.7 8.7 127 348-492 296-435 (1283)
120 cd04047 C2B_Copine C2 domain s 99.3 1.4E-11 3.1E-16 118.2 10.2 87 351-453 4-101 (110)
121 PF00168 C2: C2 domain; Inter 99.2 1.6E-11 3.5E-16 110.2 7.7 81 349-444 1-85 (85)
122 KOG2059 Ras GTPase-activating 99.2 1.9E-11 4E-16 144.9 8.4 124 348-489 6-131 (800)
123 cd00138 PLDc Phospholipase D. 99.2 1.2E-10 2.5E-15 120.3 13.3 131 838-1004 19-152 (176)
124 PHA03003 palmytilated EEV memb 99.2 1E-10 2.2E-15 135.9 13.8 145 546-759 217-363 (369)
125 cd00030 C2 C2 domain. The C2 d 99.1 2E-10 4.2E-15 104.1 9.8 99 349-462 1-102 (102)
126 smart00239 C2 Protein kinase C 99.1 2.9E-10 6.3E-15 103.9 10.2 93 348-455 1-97 (101)
127 PRK13912 nuclease NucT; Provis 99.1 1.2E-09 2.7E-14 114.5 16.2 139 545-759 33-174 (177)
128 PRK12452 cardiolipin synthetas 99.1 4.2E-10 9.1E-15 135.7 11.4 152 515-759 329-480 (509)
129 PRK13912 nuclease NucT; Provis 99.1 6.8E-10 1.5E-14 116.4 11.4 125 839-1004 32-158 (177)
130 COG5038 Ca2+-dependent lipid-b 99.0 8.7E-10 1.9E-14 137.2 11.2 134 345-495 434-569 (1227)
131 COG5038 Ca2+-dependent lipid-b 99.0 1.3E-09 2.8E-14 135.7 10.0 127 341-484 1034-1162(1227)
132 smart00149 PLCYc Phospholipase 98.9 1.9E-10 4.1E-15 112.2 -0.8 57 287-350 42-101 (115)
133 PF13091 PLDc_2: PLD-like doma 98.9 7E-09 1.5E-13 101.1 9.5 111 846-1004 2-113 (126)
134 PF13091 PLDc_2: PLD-like doma 98.9 1.4E-08 3E-13 99.1 11.5 125 550-756 1-126 (126)
135 KOG1028 Ca2+-dependent phospho 98.9 3.2E-09 6.9E-14 125.2 7.7 108 346-470 297-412 (421)
136 cd08633 PI-PLCc_eta2 Catalytic 98.9 4.1E-10 9E-15 122.7 -0.1 59 285-350 191-252 (254)
137 cd08630 PI-PLCc_delta3 Catalyt 98.9 4.1E-10 8.8E-15 123.4 -0.3 58 286-350 196-256 (258)
138 cd08595 PI-PLCc_zeta Catalytic 98.8 3.5E-10 7.5E-15 123.8 -0.9 58 285-349 194-254 (257)
139 KOG1031 Predicted Ca2+-depende 98.8 7.8E-09 1.7E-13 119.6 9.3 134 345-496 1-152 (1169)
140 KOG1328 Synaptic vesicle prote 98.8 3.8E-10 8.3E-15 133.3 -1.4 143 324-489 97-307 (1103)
141 cd08597 PI-PLCc_PRIP_metazoa C 98.8 5.5E-10 1.2E-14 122.8 -0.3 58 286-350 198-258 (260)
142 cd08592 PI-PLCc_gamma Catalyti 98.8 5.5E-10 1.2E-14 120.5 -0.3 57 286-349 167-226 (229)
143 cd08629 PI-PLCc_delta1 Catalyt 98.8 5.6E-10 1.2E-14 122.1 -0.3 57 286-349 196-255 (258)
144 cd08627 PI-PLCc_gamma1 Catalyt 98.8 7.3E-10 1.6E-14 119.2 0.6 56 287-349 168-226 (229)
145 cd08596 PI-PLCc_epsilon Cataly 98.8 5E-10 1.1E-14 122.3 -0.7 58 286-350 192-252 (254)
146 cd08625 PI-PLCc_beta3 Catalyti 98.8 7.1E-10 1.5E-14 121.9 0.3 58 286-350 196-256 (258)
147 cd08628 PI-PLCc_gamma2 Catalyt 98.8 4.5E-10 9.8E-15 122.8 -1.3 57 286-349 192-251 (254)
148 cd08624 PI-PLCc_beta2 Catalyti 98.8 6.5E-10 1.4E-14 121.9 -0.2 57 287-350 200-259 (261)
149 cd08631 PI-PLCc_delta4 Catalyt 98.8 7.6E-10 1.7E-14 121.2 -0.5 58 286-350 196-256 (258)
150 cd08626 PI-PLCc_beta4 Catalyti 98.8 6.6E-10 1.4E-14 121.6 -1.0 58 286-350 195-255 (257)
151 cd08632 PI-PLCc_eta1 Catalytic 98.8 7.3E-10 1.6E-14 120.6 -0.7 58 286-350 191-251 (253)
152 cd08374 C2F_Ferlin C2 domain s 98.8 2.2E-08 4.8E-13 100.5 9.9 93 349-454 2-125 (133)
153 cd08594 PI-PLCc_eta Catalytic 98.8 9.6E-10 2.1E-14 118.3 0.0 57 286-349 165-224 (227)
154 KOG3603 Predicted phospholipas 98.8 3.4E-06 7.4E-11 97.1 27.6 337 546-1004 73-419 (456)
155 cd08623 PI-PLCc_beta1 Catalyti 98.8 1.3E-09 2.8E-14 119.4 0.1 57 286-349 196-255 (258)
156 cd08599 PI-PLCc_plant Catalyti 98.7 1.8E-09 3.9E-14 116.7 -0.1 58 286-350 166-226 (228)
157 PF00614 PLDc: Phospholipase D 98.7 2.7E-09 5.8E-14 78.8 0.6 27 662-696 2-28 (28)
158 cd08591 PI-PLCc_beta Catalytic 98.7 1.6E-09 3.5E-14 118.6 -0.8 58 286-350 195-255 (257)
159 cd08598 PI-PLC1c_yeast Catalyt 98.7 1.5E-09 3.3E-14 117.4 -1.2 56 287-349 170-228 (231)
160 PRK11263 cardiolipin synthase 98.7 6.4E-08 1.4E-12 114.1 12.2 129 839-1003 17-153 (411)
161 cd08558 PI-PLCc_eukaryota Cata 98.7 2.5E-09 5.4E-14 115.4 -0.0 57 286-349 164-223 (226)
162 cd08689 C2_fungal_Pkc1p C2 dom 98.7 3.7E-08 8E-13 94.4 7.9 88 349-452 1-88 (109)
163 cd08593 PI-PLCc_delta Catalyti 98.7 1.9E-09 4.2E-14 118.4 -1.0 58 286-350 195-255 (257)
164 PRK01642 cls cardiolipin synth 98.6 1.9E-07 4.2E-12 112.3 12.3 134 546-759 319-454 (483)
165 PRK05443 polyphosphate kinase; 98.6 3.7E-07 8E-12 113.2 12.9 118 843-1005 351-480 (691)
166 PF00387 PI-PLC-Y: Phosphatidy 98.5 3.5E-09 7.7E-14 103.9 -4.8 53 288-347 45-100 (118)
167 PRK09428 pssA phosphatidylseri 98.4 1.1E-06 2.3E-11 104.7 11.3 122 839-989 34-161 (451)
168 KOG1328 Synaptic vesicle prote 98.3 1.7E-07 3.7E-12 111.6 1.8 89 348-451 948-1048(1103)
169 COG1502 Cls Phosphatidylserine 97.9 7.4E-05 1.6E-09 88.4 11.4 135 548-759 273-409 (438)
170 KOG3603 Predicted phospholipas 97.8 0.00014 3.1E-09 84.1 13.0 155 546-760 277-440 (456)
171 KOG2059 Ras GTPase-activating 97.8 2.2E-05 4.8E-10 94.5 6.4 105 382-486 150-279 (800)
172 cd08683 C2_C2cd3 C2 domain fou 97.7 5.1E-05 1.1E-09 75.3 6.1 82 381-462 31-143 (143)
173 PLN02866 phospholipase D 97.3 0.00066 1.4E-08 86.4 10.1 121 839-983 343-466 (1068)
174 KOG1011 Neurotransmitter relea 97.3 0.00042 9.2E-09 82.4 7.6 100 348-463 1126-1236(1283)
175 KOG0905 Phosphoinositide 3-kin 97.2 0.00021 4.5E-09 89.9 3.7 107 342-463 1519-1634(1639)
176 KOG1326 Membrane-associated pr 97.2 0.00021 4.5E-09 89.1 3.6 120 349-492 615-738 (1105)
177 KOG1013 Synaptic vesicle prote 97.0 0.00071 1.5E-08 76.2 5.3 98 348-462 234-339 (362)
178 PLN02964 phosphatidylserine de 97.0 0.00058 1.3E-08 84.4 4.1 102 345-468 52-157 (644)
179 smart00155 PLDc Phospholipase 96.8 0.00088 1.9E-08 49.6 2.4 25 663-695 3-27 (28)
180 KOG1013 Synaptic vesicle prote 96.8 0.00032 7E-09 78.8 0.0 91 348-453 94-193 (362)
181 smart00155 PLDc Phospholipase 96.8 0.00068 1.5E-08 50.1 1.6 25 962-987 4-28 (28)
182 TIGR03705 poly_P_kin polyphosp 96.6 0.017 3.8E-07 72.2 13.3 118 843-1004 342-470 (672)
183 PF13918 PLDc_3: PLD-like doma 96.4 0.0069 1.5E-07 63.8 6.9 68 531-604 72-140 (177)
184 KOG2060 Rab3 effector RIM1 and 96.2 0.004 8.7E-08 71.4 4.0 109 345-467 267-382 (405)
185 KOG3964 Phosphatidylglycerolph 96.2 0.074 1.6E-06 61.7 13.7 131 544-700 38-173 (469)
186 cd00137 PI-PLCc Catalytic doma 96.1 0.0011 2.5E-08 74.5 -0.8 56 289-348 203-270 (274)
187 KOG1326 Membrane-associated pr 95.9 0.0025 5.5E-08 79.9 0.8 98 349-464 208-317 (1105)
188 PF07894 DUF1669: Protein of u 95.8 0.058 1.3E-06 60.8 10.6 136 548-756 137-278 (284)
189 PF10358 NT-C2: N-terminal C2 95.5 0.21 4.6E-06 50.2 12.9 119 348-489 8-141 (143)
190 KOG1327 Copine [Signal transdu 95.2 0.031 6.8E-07 67.4 6.4 83 353-451 142-235 (529)
191 PF12416 DUF3668: Cep120 prote 94.9 0.26 5.6E-06 57.3 12.7 120 349-487 2-136 (340)
192 cd08398 C2_PI3K_class_I_alpha 94.9 0.16 3.4E-06 53.0 9.7 108 342-485 3-124 (158)
193 PF00614 PLDc: Phospholipase D 94.8 0.0051 1.1E-07 45.8 -0.9 24 963-987 5-28 (28)
194 cd08684 C2A_Tac2-N C2 domain f 94.8 0.02 4.4E-07 53.8 2.6 96 350-461 2-102 (103)
195 KOG3837 Uncharacterized conser 93.7 0.061 1.3E-06 62.5 4.2 117 349-483 369-503 (523)
196 cd08693 C2_PI3K_class_I_beta_d 93.1 0.6 1.3E-05 49.4 10.2 75 343-434 4-87 (173)
197 PF11495 Regulator_TrmB: Archa 91.7 0.31 6.7E-06 53.7 6.1 48 546-606 11-58 (233)
198 cd08380 C2_PI3K_like C2 domain 91.3 1.5 3.3E-05 45.1 10.3 88 346-449 7-106 (156)
199 COG3886 Predicted HKD family n 91.0 1.3 2.8E-05 47.3 9.4 142 545-760 39-182 (198)
200 PF13090 PP_kinase_C: Polyphos 90.4 29 0.00063 40.7 20.3 130 546-754 19-160 (352)
201 cd04012 C2A_PI3K_class_II C2 d 90.0 1.1 2.4E-05 47.2 8.1 89 345-448 6-117 (171)
202 cd08399 C2_PI3K_class_I_gamma 89.1 3.9 8.4E-05 43.7 11.3 126 342-487 5-142 (178)
203 KOG1452 Predicted Rho GTPase-a 89.1 0.6 1.3E-05 52.9 5.4 125 341-486 45-170 (442)
204 PLN02352 phospholipase D epsil 88.9 1.3 2.9E-05 56.1 8.9 63 839-906 186-250 (758)
205 cd08397 C2_PI3K_class_III C2 d 88.2 1.4 3E-05 46.1 7.2 68 382-449 29-106 (159)
206 PLN02270 phospholipase D alpha 85.7 3.4 7.3E-05 53.0 9.8 63 839-906 208-271 (808)
207 PF00792 PI3K_C2: Phosphoinosi 85.3 2.9 6.3E-05 42.5 7.6 67 384-450 3-85 (142)
208 PF15627 CEP76-C2: CEP76 C2 do 85.1 6.7 0.00015 41.0 10.1 103 383-486 34-153 (156)
209 PF15625 CC2D2AN-C2: CC2D2A N- 84.4 3.6 7.7E-05 43.4 7.9 69 383-451 37-107 (168)
210 KOG4269 Rac GTPase-activating 83.9 1.8 4E-05 54.9 6.3 123 341-491 753-890 (1112)
211 PF13918 PLDc_3: PLD-like doma 83.8 4.7 0.0001 43.0 8.4 58 842-913 84-147 (177)
212 KOG1329 Phospholipase D1 [Lipi 82.5 3 6.6E-05 53.4 7.5 122 839-982 302-425 (887)
213 PF14429 DOCK-C2: C2 domain in 81.7 4.2 9.1E-05 43.2 7.3 53 397-449 61-120 (184)
214 PLN03008 Phospholipase D delta 81.2 5.1 0.00011 51.5 8.8 59 546-604 568-633 (868)
215 COG0855 Ppk Polyphosphate kina 79.3 3.1 6.7E-05 51.6 5.9 93 885-1004 385-483 (696)
216 cd08687 C2_PKN-like C2 domain 77.5 14 0.00031 35.5 8.4 84 383-482 9-92 (98)
217 PF11618 DUF3250: Protein of u 77.0 11 0.00024 37.0 7.9 94 386-483 2-105 (107)
218 KOG1327 Copine [Signal transdu 75.3 5.3 0.00012 48.9 6.4 61 394-454 40-106 (529)
219 COG0855 Ppk Polyphosphate kina 73.8 14 0.0003 46.2 9.3 92 545-674 352-447 (696)
220 smart00142 PI3K_C2 Phosphoinos 72.1 18 0.00039 34.7 8.0 51 383-433 32-91 (100)
221 cd08695 C2_Dock-B C2 domains f 69.6 11 0.00023 40.8 6.4 37 397-433 55-94 (189)
222 KOG3964 Phosphatidylglycerolph 69.4 6.2 0.00013 46.5 4.8 54 839-908 38-91 (469)
223 cd08696 C2_Dock-C C2 domains f 66.9 21 0.00045 38.3 7.9 40 395-434 54-96 (179)
224 cd08694 C2_Dock-A C2 domains f 65.8 15 0.00031 40.0 6.5 51 397-447 55-113 (196)
225 PF13090 PP_kinase_C: Polyphos 65.0 3.7 8.1E-05 47.8 2.0 94 885-1005 51-150 (352)
226 cd08679 C2_DOCK180_related C2 63.7 17 0.00037 38.5 6.5 51 399-449 56-115 (178)
227 PF09565 RE_NgoFVII: NgoFVII r 56.9 78 0.0017 36.6 10.6 87 896-1003 32-123 (296)
228 cd08697 C2_Dock-D C2 domains f 55.8 43 0.00094 36.1 7.9 40 395-434 56-98 (185)
229 PF07894 DUF1669: Protein of u 52.9 57 0.0012 37.5 8.6 123 839-1000 133-262 (284)
230 KOG0694 Serine/threonine prote 50.7 4.8 0.0001 50.4 -0.3 94 383-485 28-123 (694)
231 cd05137 RasGAP_CLA2_BUD2 CLA2/ 49.0 17 0.00037 43.5 4.0 45 439-485 1-46 (395)
232 PF11495 Regulator_TrmB: Archa 48.5 33 0.00071 37.9 5.8 51 838-908 8-58 (233)
233 KOG2236 Uncharacterized conser 46.5 32 0.00069 41.5 5.5 12 47-58 453-464 (483)
234 KOG1924 RhoA GTPase effector D 45.6 42 0.00091 42.9 6.5 13 439-451 707-719 (1102)
235 PF08735 DUF1786: Putative pyr 44.4 80 0.0017 35.8 8.0 127 885-1055 5-136 (254)
236 PTZ00447 apical membrane antig 34.1 2.2E+02 0.0047 33.6 9.4 112 348-486 59-174 (508)
237 KOG0119 Splicing factor 1/bran 31.1 1.8E+02 0.0039 35.7 8.4 24 114-139 466-489 (554)
238 KOG0917 Uncharacterized conser 30.4 2.8E+02 0.006 31.8 9.1 32 85-116 246-277 (338)
239 PF06415 iPGM_N: BPG-independe 27.5 1.2E+02 0.0026 33.8 5.8 52 548-607 14-71 (223)
240 KOG3543 Ca2+-dependent activat 27.1 2.7E+02 0.0058 35.1 9.0 113 348-482 342-458 (1218)
241 KOG4849 mRNA cleavage factor I 26.0 1.3E+02 0.0029 35.1 6.0 21 83-103 314-334 (498)
242 KOG0404 Thioredoxin reductase 24.4 2.3E+02 0.005 31.9 7.2 81 487-609 134-216 (322)
243 KOG0260 RNA polymerase II, lar 22.8 3.6E+02 0.0078 36.7 9.4 7 312-318 1580-1586(1605)
244 PF13289 SIR2_2: SIR2-like dom 22.4 2.6E+02 0.0056 27.5 6.8 64 546-640 75-142 (143)
245 KOG1676 K-homology type RNA bi 21.5 3E+02 0.0066 34.6 8.2 11 91-101 491-501 (600)
246 KOG1120 Fe-S cluster biosynthe 21.4 38 0.00082 34.3 0.6 21 172-192 102-122 (134)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=1.3e-185 Score=1647.84 Aligned_cols=774 Identities=56% Similarity=0.968 Sum_probs=713.5
Q ss_pred CCCcceeeeceEEEEEEEEeeCCCCCCCCCccccccccc---------------------------ccCCCCCCCcEEEE
Q 001250 337 KGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNS---------------------------QMNTKITSDPYVTI 389 (1114)
Q Consensus 337 ~~~~~~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k---------------------------~~~~~itsDPYV~V 389 (1114)
+-++.+.||||+|+|||++|++|++||++.++++.+|.. ++.+.+++||||+|
T Consensus 4 ~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I 83 (868)
T PLN03008 4 KVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTV 83 (868)
T ss_pred ccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEE
Confidence 456788999999999999999999999887766655530 12246789999999
Q ss_pred EECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCCCCC
Q 001250 390 AVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP 469 (1114)
Q Consensus 390 ~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp 469 (1114)
.+++++++||+|++++.||+|||+|+|+|+++...|+|+|||+|.+++++||++.|||++|..|..+++|++|++.+|++
T Consensus 84 ~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp 163 (868)
T PLN03008 84 VVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKP 163 (868)
T ss_pred EECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEeccccccccccCcCCCCCCCCCCCCCCCcccCCeeEEcccCCCCCCCCCceeecCCccccchhhHHH
Q 001250 470 CKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYD 549 (1114)
Q Consensus 470 ~k~~g~L~L~l~F~p~~~~~~~~~GV~~~~~~~GVp~t~~P~r~Gn~V~ly~Dg~~~~~~~~~~~~~~g~~y~~g~~f~a 549 (1114)
++++++|+|+|+|+|+++++.|.+||++++++.|||+||||+|+||+||||||||++||++|+|.|+||+.|++++||++
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwed 243 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWED 243 (868)
T ss_pred CCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccceEEEEEEEecceeEEeCCC--CChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccccccccCcH
Q 001250 550 ICNAISQAQRLIYITGWSVWHKVKLVRDAS--PALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDE 627 (1114)
Q Consensus 550 l~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~--~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~d~ 627 (1114)
|++||++||++|||+|||++++++|+|+.. .+.+.||++||++||+|||+|+|||||+.+|...+++++.|+|.|+|+
T Consensus 244 i~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thde 323 (868)
T PLN03008 244 ICYAISEAHHMIYIVGWSIFHKIKLVRETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDE 323 (868)
T ss_pred HHHHHHhhhheEEEeceeecceeEEecCCCCCCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccH
Confidence 999999999999999999999999999974 224789999999999999999999999999987778899999999999
Q ss_pred HHHHHHhcCCcEEEEccCccCccccccccc-----------ccccccccccceEEEcCCCCCCCccEEEEEcccccCCCc
Q 001250 628 ETRRVFKHSSVKVLLCPRIAGKRHSWAKQK-----------EVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 696 (1114)
Q Consensus 628 ~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~-----------~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgR 696 (1114)
+++++|+|++|+|.+||+.+...++++++. .++++|+||||+||||+++++++|+.||||||||||+||
T Consensus 324 et~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gR 403 (868)
T PLN03008 324 ETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGR 403 (868)
T ss_pred HHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCCc
Confidence 999999999999999999877777887763 456889999999999998777889999999999999999
Q ss_pred CCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcCCCC----ccccC-CC
Q 001250 697 YDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHG----IKKLK-SG 771 (1114)
Q Consensus 697 wDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPAA~Dl~~~F~qRWn~a~~~~~----~~~L~-~~ 771 (1114)
|||++|++++++++.+.+||+||++.+ ..+.|++||||+|++|+||||++|+.+|++||+++++... .++.. +.
T Consensus 404 wDT~~H~l~~~l~t~~~~D~~np~~~~-~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~ 482 (868)
T PLN03008 404 YDTPEHRILHDLDTVFKDDFHNPTFPA-GTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQ 482 (868)
T ss_pred cCCcCCCccccccccccccccCccccC-CCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccccc
Confidence 999999999999999999999999754 3557899999999999999999999999999999998531 11111 34
Q ss_pred chhhhhhccCCCccCCCC--------------C-C-CCcCCCCCCceEEEEeecCCcccCCCCCCchhhcccccccCccc
Q 001250 772 DDALLRIERIPGIIGISD--------------A-P-SVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNV 835 (1114)
Q Consensus 772 ~~~ll~~~~~p~~~~~~~--------------~-p-~~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~~~~~lv~gk~~ 835 (1114)
++.|+.+++++.++.+.. . + ...+.++++|.+|+|||++.+++++||+.+++++.++++|||++
T Consensus 483 ~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~ 562 (868)
T PLN03008 483 DDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRL 562 (868)
T ss_pred cchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhcccccccc
Confidence 677777777766543210 0 0 11135678999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCC
Q 001250 836 LIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPT 915 (1114)
Q Consensus 836 ~~e~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~ 915 (1114)
++|+||++||++||++||||||||||||++++++|+++.+.++.|+|++||++||++|++++++|+||||+|+||||.++
T Consensus 563 ~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~~ 642 (868)
T PLN03008 563 VVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPK 642 (868)
T ss_pred chhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccC-----------------------------CceE
Q 001250 916 GAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLG-----------------------------NREV 966 (1114)
Q Consensus 916 ~~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~-----------------------------~HsK 966 (1114)
++++|+||+||++||++||.+|+++|+++|... +|.+||+||||| .|+|
T Consensus 643 sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~--~p~dyl~fy~L~~~e~~~~~~~~~~~~~~~~a~~~rr~~IYvHsK 720 (868)
T PLN03008 643 SGPVQEILYWQSQTMQMMYDVIAKELKAVQSDA--HPLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYVHAK 720 (868)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CccCEEEEecccccccccCCCCCCCCchhhhhhhccceeEEEeee
Confidence 999999999999999999999999999987543 478999999984 3788
Q ss_pred EeccCCCceeCCCCCCCCcCCCCCCCCcceEEEEEcCcchhhcccCCCchhHHHHHHHHHHHHhCCCccccCCCcchHHH
Q 001250 967 IDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECV 1046 (1114)
Q Consensus 967 ~~ivDd~~~~~IGSANiN~RSM~G~rDsEIav~i~dp~~~~a~~~~~~~g~i~~lR~~Lw~EHLG~~~~~f~~p~sle~v 1046 (1114)
++++|| ++++|||||||+|||.|+|||||++++||+.++|+.+++.++|+|++|||+||+||||+.++.|.+|+++|||
T Consensus 721 ~~ivDd-~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG~~~~~~~~p~s~ecv 799 (868)
T PLN03008 721 GMIVDD-EYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLECL 799 (868)
T ss_pred EEEECC-CEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhCCCHHHccCCCCHHHH
Confidence 999999 7999999999999999999999999999999999877788999999999999999999999999999999999
Q ss_pred HHHHHHHHhchhhhhhhcccccccccccCCcccCCCCCccCCCCCCCCCCCCCceecccc-ccCcCCCC
Q 001250 1047 RKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFF-AIQENLTI 1114 (1114)
Q Consensus 1047 ~~v~~~ae~n~~~~a~~~~~~~~GhLv~yP~~~~~~g~~~~lpg~~~fpd~~~~i~g~~~-~~~~~lt~ 1114 (1114)
++||++|++||++|+++++++|+||||+||+.|++||+|++|||+|+||||+|+|+|+++ +||++|||
T Consensus 800 ~~vn~~a~~~w~~y~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp~~ltt 868 (868)
T PLN03008 800 KKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868 (868)
T ss_pred HHHHHHHHHHHHHhhccccccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999996 89999997
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=3e-176 Score=1569.39 Aligned_cols=752 Identities=45% Similarity=0.817 Sum_probs=682.5
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCccccccccc----ccCCCCCCCcEEEEEECCEEEEeeeeecC-CCCCeeceEEEEE
Q 001250 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNS----QMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVP 417 (1114)
Q Consensus 343 ~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k----~~~~~itsDPYV~V~L~g~~v~RTrVI~n-t~NPvWNE~F~f~ 417 (1114)
.||||+|+|||++|++|+++|. .+.+.+++.. ....++++||||+|.+++++++||+|+.| ..||+|||+|+++
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEe
Confidence 4899999999999999998654 2223333221 11234679999999999999999999998 4799999999999
Q ss_pred ecCCCceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEeccccccccccCcCC
Q 001250 418 VAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGE 497 (1114)
Q Consensus 418 va~~~~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~~~~~~~~GV~~ 497 (1114)
|+|+.+.|+|+|||.|.+|+++||++.||+++|.+|+.+++||+|++.+|||++++.+|||+|+|+|++++++|++||++
T Consensus 83 ~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~~gv~~ 162 (808)
T PLN02270 83 CAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGIRS 162 (808)
T ss_pred eccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcchhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCCCCCCCCCCCcccCCeeEEcccCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccceEEEEEEEecceeEEeC
Q 001250 498 GPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRD 577 (1114)
Q Consensus 498 ~~~~~GVp~t~~P~r~Gn~V~ly~Dg~~~~~~~~~~~~~~g~~y~~g~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rd 577 (1114)
++|.|||+||||+|+||+||||||||++|+++|+|.|+||+.|.+++||++|++||++||++|||+||+|+++|+|+|+
T Consensus 163 -~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~IyI~GW~~d~~i~LvRd 241 (808)
T PLN02270 163 -AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLVRD 241 (808)
T ss_pred -cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEEEEEeecCCCceEecC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC---ChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccccccccCcHHHHHHHhcCCcEEEEccCccCcccccc
Q 001250 578 ASP---ALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWA 654 (1114)
Q Consensus 578 d~~---~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~d~~~~~~~~h~gV~v~l~P~~~~~~~~~~ 654 (1114)
+.+ +...+|++||++||++||+|+||+||+.++... ++..|+|.|++++++++|++++|+|++||+.+..+.+|+
T Consensus 242 ~~~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t~~~f~~~~V~~~L~~r~P~~~~~~~ 319 (808)
T PLN02270 242 SRRPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEETENFFRGTDVHCILCPRNPDDGGSIV 319 (808)
T ss_pred CCCCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHHHHHhccCCceEEEcCCCccccccee
Confidence 642 345799999999999999999999999987654 456799999999999999999999999999877666777
Q ss_pred cccccccccccccceEEEcCCCCC---CCccEEEEEcccccCCCcCCCCCCCcccccccccCCCCCCCcccCC--CCCCC
Q 001250 655 KQKEVGTIYTHHQKTVIVDADAGY---NRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGN--TTGCP 729 (1114)
Q Consensus 655 ~~~~~~~~~rHHQKiVVID~~~~~---~~r~~VAFvGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~--~~~~p 729 (1114)
++..+++.++||||+||||+++++ ++|+.||||||||||+|||||++|++|++|++.|++||+||+|.+. ..++|
T Consensus 320 ~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df~~p~~~~~~~~~g~P 399 (808)
T PLN02270 320 QDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASITKGGP 399 (808)
T ss_pred eccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccccCcccccccccCCCC
Confidence 766788899999999999997544 4799999999999999999999999999999999999999998763 46889
Q ss_pred CCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcCCCCccccCCCchhhhhhccCCCccCCCCCCCCcCCCCCCceEEEEeec
Q 001250 730 REPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSI 809 (1114)
Q Consensus 730 r~PWHDvh~rVeGPAA~Dl~~~F~qRWn~a~~~~~~~~L~~~~~~ll~~~~~p~~~~~~~~p~~~~~~~~~~~vQv~RSi 809 (1114)
|+||||+||+|+||||++|+.+|++||+.++++..+ ....++..+..+. .+...+.+.++|+||+|||+
T Consensus 400 r~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~ll----------~~~~~~~~~~~P~-~~~~~p~d~~~w~VQvfRSi 468 (808)
T PLN02270 400 REPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDIL----------VQLRELEDVIIPP-SPVMFPDDHEVWNVQLFRSI 468 (808)
T ss_pred CCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccch----------hhhcccccccCCC-CcccCCCcCCccccceeecc
Confidence 999999999999999999999999999999876311 1111111111111 11112356788999999999
Q ss_pred CCcccCCCCCCchhhcccccccCccccchHHHHHHHHHHHHhcccEEEEEeeeeccCCCCcccc----ccCCCCCchHHH
Q 001250 810 DSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSY----RDLGANNLIPME 885 (1114)
Q Consensus 810 ~~~s~~~fP~~p~~~~~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~----~~~~a~N~I~~e 885 (1114)
+.+++++||+.|+++..+++++|++..+++||++||++||++||||||||||||++++++|.++ ++.+|.|+||+|
T Consensus 469 d~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~e 548 (808)
T PLN02270 469 DGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKE 548 (808)
T ss_pred cchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHH
Confidence 9999999999999998899999999888999999999999999999999999999999999866 888999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccC---
Q 001250 886 IALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLG--- 962 (1114)
Q Consensus 886 Ia~aLa~aira~~gf~V~IVlP~~Peg~p~~~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~--- 962 (1114)
|++||++||+++++|+||||+|+||||.++++++|+||+||++||++||.+|+++|+++|+.. .|.+||+||||+
T Consensus 549 l~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~--dp~dyL~ff~L~nre 626 (808)
T PLN02270 549 LSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEE--DPRNYLTFFCLGNRE 626 (808)
T ss_pred HHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccC--CccceEEEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999753 478999999975
Q ss_pred -------------------------------CceEEeccCCCceeCCCCCCCCcCCCCCCCCcceEEEEEcCcchhhccc
Q 001250 963 -------------------------------NREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQPEYTWARMK 1011 (1114)
Q Consensus 963 -------------------------------~HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEIav~i~dp~~~~a~~~ 1011 (1114)
.|+|++++|| .+++|||||||+|||.|+|||||||++|||.++++.
T Consensus 627 ~~~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd-~~~~iGSaN~n~rS~~G~rDSEIam~a~qp~~~~~~-- 703 (808)
T PLN02270 627 VKKSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDD-EYIIIGSANINQRSMDGARDSEIAMGGYQPYHLSTR-- 703 (808)
T ss_pred cccCcccCCccCCcccchhhhhhhccceeEEEeeeEEEEcC-CEEEEeccccccccccCCccchhhhcccCccccccc--
Confidence 3789999998 799999999999999999999999999999887653
Q ss_pred CCCchhHHHHHHHHHHHHhCCCccccCCCcchHHHHHHHHHHHhchhhhhhhcc-cccccccccCCcccCCCCCccCCCC
Q 001250 1012 RHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQ-SEMRSHLIKYPVEVDRKGKVRPIPG 1090 (1114)
Q Consensus 1012 ~~~~g~i~~lR~~Lw~EHLG~~~~~f~~p~sle~v~~v~~~ae~n~~~~a~~~~-~~~~GhLv~yP~~~~~~g~~~~lpg 1090 (1114)
..++++|++|||+||+||||+.++.|.+|+|+|||++||++|++||++|+++++ .+|+||||+||+.|++||+|++|||
T Consensus 704 ~~~r~~i~~~R~~Lw~EHLG~~~~~f~~p~s~~cv~~v~~~a~~~w~~y~~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g 783 (808)
T PLN02270 704 QPARGQIHGFRMSLWYEHLGMLDETFLDPESEECIQKVNQIADKYWDLYSSETLEHDLPGHLLRYPIGVASEGDITELPG 783 (808)
T ss_pred cchHHHHHHHHHHHHHHHhCCChhHhhCCCcHHHHHHHHHHHHHHHHHhcccccCCCCCcccccCceEecCCCcEeeCCC
Confidence 367899999999999999999999999999999999999999999999999999 5899999999999999999999999
Q ss_pred CCCCCCCCCceecccc-ccCcCCCC
Q 001250 1091 YETFPDVGGNIVGSFF-AIQENLTI 1114 (1114)
Q Consensus 1091 ~~~fpd~~~~i~g~~~-~~~~~lt~ 1114 (1114)
+|+||||+|+|+|+++ +||++|||
T Consensus 784 ~~~fpd~~~~v~g~~~~~~p~~ltt 808 (808)
T PLN02270 784 TEFFPDTKARVLGAKSDYLPPILTT 808 (808)
T ss_pred CCcCCCCCCceeccccccCCccccC
Confidence 9999999999999996 89999997
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=4.9e-167 Score=1488.65 Aligned_cols=706 Identities=42% Similarity=0.734 Sum_probs=628.4
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC
Q 001250 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 342 ~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
-.||||+|++||++|+-+. +.+.. ...++ ...||||+|.+++++++|| .+..||+|||+|.++|+|.
T Consensus 5 ~~~lhg~l~~~i~~~~~~~--~~~~~--~~~~~------~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~ 71 (758)
T PLN02352 5 QKFFHGTLEATIFDATPYT--PPFPF--NCIFL------NGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP 71 (758)
T ss_pred ccccccceEEEEEEeeehh--hcccc--ccccc------CCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee
Confidence 4589999999999999322 11110 00010 1249999999999999999 6677999999999999999
Q ss_pred C-ceEEEEEEEecCCCCccceEEEEeeeeeecCce-eeeeeeeccCCCCCCCCCCeEEEEEEEeccccccccccCcCCCC
Q 001250 422 A-AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGK-VEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGVGEGP 499 (1114)
Q Consensus 422 ~-~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~-id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~~~~~~~~GV~~~~ 499 (1114)
. +.|+|+||| +.++||++.||+++|.+|.. +++||+|++.+|||+++ ++|+|+|+|+|+++++.|.+||++ +
T Consensus 72 ~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~ 145 (758)
T PLN02352 72 LDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAELEPTWCKILEN-G 145 (758)
T ss_pred cCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhhhCcchhhcccC-C
Confidence 8 899999999 68999999999999999966 99999999999999965 899999999999999999999976 6
Q ss_pred CCCCCCCCCCCcccCCeeEEcccCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccceEEEEEEEecceeEEeCCC
Q 001250 500 DYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS 579 (1114)
Q Consensus 500 ~~~GVp~t~~P~r~Gn~V~ly~Dg~~~~~~~~~~~~~~g~~y~~g~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~ 579 (1114)
+|.|||+||||+|+||+||||||||++|+++|+|.| .|...+||++|++||++||++|||+||+|+++++|+|++.
T Consensus 146 ~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~ 221 (758)
T PLN02352 146 SFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRDPE 221 (758)
T ss_pred CcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccEEEEEEEEecCCceeccCcc
Confidence 999999999999999999999999999999999998 4677789999999999999999999999999999999864
Q ss_pred C----ChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccccccccCcHHHHHHHhcCCcEEEEccCccCccccccc
Q 001250 580 P----ALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAK 655 (1114)
Q Consensus 580 ~----~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~d~~~~~~~~h~gV~v~l~P~~~~~~~~~~~ 655 (1114)
+ +.+.+|+++|++||+|||+|+||+||+.++... ++..|+|.|++++++++|+|++|+|++||+...
T Consensus 222 ~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~~~~~~~f~h~~V~~~l~pr~~~------- 292 (758)
T PLN02352 222 TDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHDEDAFAYFKHTKVVCKLCPRLHK------- 292 (758)
T ss_pred cccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccchHHHHhhccCCceEEeecccccc-------
Confidence 2 357999999999999999999999999987654 466788999999999999999999999997532
Q ss_pred ccccccccccccceEEEcCCCCC--CCccEEEEEcccccCCCcCCCCCCCcccccccc-cCCCCCCCcccCC--CCCCCC
Q 001250 656 QKEVGTIYTHHQKTVIVDADAGY--NRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTL-HKDDYHNPTFTGN--TTGCPR 730 (1114)
Q Consensus 656 ~~~~~~~~rHHQKiVVID~~~~~--~~r~~VAFvGGiDL~dgRwDt~~H~l~~~l~~~-~~~Dy~np~~~~~--~~~~pr 730 (1114)
..++.|+||||+||||+++++ ++|+++|||||||||+|||||++|++++++++. |++||+|++|.+. ..++||
T Consensus 293 --~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~~~~~g~~~~~g~PR 370 (758)
T PLN02352 293 --KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGPR 370 (758)
T ss_pred --ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcccccccccccccccccccccccCCCCCCC
Confidence 346789999999999997654 578899999999999999999999999999885 7799999998753 568899
Q ss_pred CCeeEEEEEEeCHHHHHHHHHHHHHHHHhcCCCCccccCCCchhhhhhccCCCccCCCCCCCCcCCCCCCceEEEEeecC
Q 001250 731 EPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSID 810 (1114)
Q Consensus 731 ~PWHDvh~rVeGPAA~Dl~~~F~qRWn~a~~~~~~~~L~~~~~~ll~~~~~p~~~~~~~~p~~~~~~~~~~~vQv~RSi~ 810 (1114)
+|||||||+|+||||+||++||+||||++++...+ +....++.+... +.....+.++|+||++||++
T Consensus 371 ~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~~l----------~p~~~~~~~~~~---p~~~~~~~~~w~VQv~RSid 437 (758)
T PLN02352 371 EPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPSVL----------VPTSSIRNLVHQ---PGSSESNNRNWKVQVYRSID 437 (758)
T ss_pred CCcEeEEEEEECHHHHHHHHHHHHHHhhccCcccc----------CCcccccccccC---CCCCcccCCcccceEEEecC
Confidence 99999999999999999999999999999875311 111111111110 10112356789999999999
Q ss_pred CcccCCCCCCchhhcccccccCccccchHHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHH
Q 001250 811 STSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKI 890 (1114)
Q Consensus 811 ~~s~~~fP~~p~~~~~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aL 890 (1114)
.|++++||+. ..+|+||++||++||++||||||||||||+++++.|+++++.++.|+||++|++||
T Consensus 438 ~~sa~~~P~~--------------~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI 503 (758)
T PLN02352 438 HVSASHMPRN--------------LPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKI 503 (758)
T ss_pred ccccccCCCC--------------CchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHH
Confidence 9999888742 23589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCC-------
Q 001250 891 ADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGN------- 963 (1114)
Q Consensus 891 a~aira~~gf~V~IVlP~~Peg~p~~~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~------- 963 (1114)
++|++++++|+||||+|+||+|.+++.++|+||+||++||++||.+|.++|+++|... +|.+||+||||||
T Consensus 504 ~~kir~~e~f~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~--~P~dYl~F~cL~n~e~~~~g 581 (758)
T PLN02352 504 ASKIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPG--HPRDYLNFFCLANREEKRKG 581 (758)
T ss_pred HHHHhCCCCCEEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccC--ChhHheeeecccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999998654 5899999999986
Q ss_pred ---------------------------ceEEeccCCCceeCCCCCCCCcCCCCCCCCcceEEEEEcCcchhhcccCCCch
Q 001250 964 ---------------------------REVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQPEYTWARMKRHPYG 1016 (1114)
Q Consensus 964 ---------------------------HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEIav~i~dp~~~~a~~~~~~~g 1016 (1114)
|+|+||||| ++++|||||||+|||.|+|||||||+++|++++... ...+
T Consensus 582 ~~~~~~~p~~~~~~~~~~~~rr~~IYVHSKlMIVDD-~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~~~---~~~~ 657 (758)
T PLN02352 582 EFVPPYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDD-TYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGTNT---NNPR 657 (758)
T ss_pred ccccccCCCCCchhhhcccccceeEEEeeeEEEEcC-cEEEEcccccccccccCcccchhhhcccccccCCCc---ccch
Confidence 568999999 788999999999999999999999999999876432 3458
Q ss_pred hHHHHHHHHHHHHhCCCccccCCCcchHHHHHHHHHHHhchhhhhhhccccccc-ccccCCcccCCCCCccCC-CCCCCC
Q 001250 1017 QIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRS-HLIKYPVEVDRKGKVRPI-PGYETF 1094 (1114)
Q Consensus 1017 ~i~~lR~~Lw~EHLG~~~~~f~~p~sle~v~~v~~~ae~n~~~~a~~~~~~~~G-hLv~yP~~~~~~g~~~~l-pg~~~f 1094 (1114)
+|++|||+||+||||+.++.|.+|+|+|||++||++|++||++|++|++++|+| |||+||+.|++||+|++| ||+|+|
T Consensus 658 ~i~~~R~~L~~EHLG~~~~~f~~p~s~ec~~~v~~~~~~~w~~y~~~~~~~~~g~hl~~yp~~v~~~g~v~~l~~g~~~f 737 (758)
T PLN02352 658 DIQAYRMSLWYEHTGLDEESFLEPESLECVRRLRTIGEQMWEIYSGEEVVDMEGVHLVNYPISVTKDGAVEDLADGDGNF 737 (758)
T ss_pred HHHHHHHHHHHHHhCCCHHHhcCCCCHHHHHHHHHHHHHHHHhhccchhccCCCcccccCCeEecCCcceeecCCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999 699999
Q ss_pred CCCCCceecccc-ccCcCCCC
Q 001250 1095 PDVGGNIVGSFF-AIQENLTI 1114 (1114)
Q Consensus 1095 pd~~~~i~g~~~-~~~~~lt~ 1114 (1114)
|||+|+|+|+++ +||++|||
T Consensus 738 pd~~~~v~g~~~~~~p~~lt~ 758 (758)
T PLN02352 738 PDTKTPVKGRRSKMLPPVFTT 758 (758)
T ss_pred CCCCCceeccccccCCccccC
Confidence 999999999996 99999997
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-149 Score=1330.21 Aligned_cols=736 Identities=48% Similarity=0.782 Sum_probs=660.7
Q ss_pred CCCCcceeeeceEEEEEEEEeeCCCCCCCCCccccc---ccc-------------c----------ccCCCCCCCcEEEE
Q 001250 336 TKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGG---MFN-------------S----------QMNTKITSDPYVTI 389 (1114)
Q Consensus 336 q~~~~~~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~---~~~-------------k----------~~~~~itsDPYV~V 389 (1114)
...+..+.|+||+|+++|+.+..+.+++.+..+... .++ + .+.+..+.++|+++
T Consensus 65 ~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~Ylt~ 144 (887)
T KOG1329|consen 65 SSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLENYLTV 144 (887)
T ss_pred CCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccchhee
Confidence 345567789999999999999999876644332111 111 0 12233457999999
Q ss_pred EECCEEEEeeeeecCC-CCCeeceEEEEEecCCCceEEEEEEEecCCC-CccceEEEEeeeeeecCceeeeeeeeccCCC
Q 001250 390 AVAGAVVGRTFVISNS-EDPVWQQHFYVPVAHSAAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSG 467 (1114)
Q Consensus 390 ~L~g~~v~RTrVI~nt-~NPvWNE~F~f~va~~~~~L~f~V~D~D~~g-ddfIGqa~IpL~eL~sG~~id~W~pLl~~~G 467 (1114)
.+...++.+|+++.+. .+|.|.+.|.+.+++....++++|++.+..| +.++|.+++++..+.+|..+++|+++++.++
T Consensus 145 ~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 145 VLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDG 224 (887)
T ss_pred eechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCC
Confidence 9999999999999986 8999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEEeccccccccccCcCCCCCCCCCCCCCCCcccCCeeEEcccCCCCCCCCCceeecCCccccch-hh
Q 001250 468 KPCKPGATLTLSIQYTPMERLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHG-KC 546 (1114)
Q Consensus 468 kp~k~~g~L~L~l~F~p~~~~~~~~~GV~~~~~~~GVp~t~~P~r~Gn~V~ly~Dg~~~~~~~~~~~~~~g~~y~~g-~~ 546 (1114)
++++++..++++++|++.+++..|..|+.+.+.+.|++.++|++++||.|++|||+|..++++|.+.+++|++|+++ +|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~ 304 (887)
T KOG1329|consen 225 KPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKY 304 (887)
T ss_pred ccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999977776 58
Q ss_pred HHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccccccccCc
Q 001250 547 WYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHD 626 (1114)
Q Consensus 547 f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~d 626 (1114)
|++|++||++||++|||+|||++|+++|+|+...+.++||++|||+||+|||+|+|||||+.++... + +|++
T Consensus 305 ~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~--i------~S~~ 376 (887)
T KOG1329|consen 305 WEDVADAIENARREIYITGWWLSPELYLVRPPKGPNDWRLDELLKRKAEEGVRVLILVWKDVTSALG--I------NSHY 376 (887)
T ss_pred HHHHHHHHHhhhhEEEEeccccCceEEEEccCCCCCceEHHHHHHHHHhCCcEEEEEEeccchhccc--c------Cchh
Confidence 9999999999999999999999999999999887678999999999999999999999999997543 2 3778
Q ss_pred HHHHHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCCCccc
Q 001250 627 EETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFR 706 (1114)
Q Consensus 627 ~~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l~~ 706 (1114)
+++..+++|++|+|++||+..++.. .++|+||||+||||+ .+|||||||||+|||||++|+|++
T Consensus 377 ~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~--------~v~fvGGlDLC~GRYDT~eH~L~d 440 (887)
T KOG1329|consen 377 EKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQ--------EVAFVGGLDLCDGRYDTPEHPLFD 440 (887)
T ss_pred HHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcc--------eeccccceeccccccCCccccccc
Confidence 8999999999999999999755321 368999999999999 899999999999999999999999
Q ss_pred ccccccCCCCCCCcccC----CCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcCCCCccccCCCchhhhhhccCC
Q 001250 707 TLQTLHKDDYHNPTFTG----NTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIP 782 (1114)
Q Consensus 707 ~l~~~~~~Dy~np~~~~----~~~~~pr~PWHDvh~rVeGPAA~Dl~~~F~qRWn~a~~~~~~~~L~~~~~~ll~~~~~p 782 (1114)
++++||++||+||+|++ ++.++||||||||||+|.||+|+||++||+||||++...+. .+++.+..+..++
T Consensus 441 ~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~-----~~~~~~p~L~p~~ 515 (887)
T KOG1329|consen 441 TLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKK-----PYDDSLPLLLPIS 515 (887)
T ss_pred cccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccC-----CCCccceeecChh
Confidence 99999999999999998 67899999999999999999999999999999999876421 1122222222223
Q ss_pred CccCCCCCCCCcCCCCCCceEEEEeecCCcccCCCCCCchhhcccccccCccccchHHHHHHHHHHHHhcccEEEEEeee
Q 001250 783 GIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQY 862 (1114)
Q Consensus 783 ~~~~~~~~p~~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~~~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~fIYIENQY 862 (1114)
.+..+ +...+.+++.|.+|++||++.+++.+ ++.+.+.+++||+...+|+||++||+++|++|||||||||||
T Consensus 516 ~~~~~---~~~~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQf 588 (887)
T KOG1329|consen 516 DITGP---SEPNEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHFIYIENQF 588 (887)
T ss_pred hhcCC---CCccccccccccccceeeccCCcccc----hHHhhhhcccccCCCchHHHHHHHHHHHHHhccceEEEeeee
Confidence 32211 11245678899999999999987755 667777889999998899999999999999999999999999
Q ss_pred eccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCC--CC--CCCchhhHHHHHHHHHHHHHHHHHHH
Q 001250 863 FIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWP--EG--VPTGAATQRILFWQHKTMQMMYETIY 938 (1114)
Q Consensus 863 Fi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~P--eg--~p~~~avq~il~wq~~tm~~~~~si~ 938 (1114)
|+++++.|.. ..|.|+++|+++|++|+|++++|+||||||+|| || .++++++|+||+||++||+||+++|+
T Consensus 589 Fi~ss~~~~~-----~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl~wQyrTms~g~~sI~ 663 (887)
T KOG1329|consen 589 FIGSSFNWDS-----VLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAILHWQYRTMSMGYKSIY 663 (887)
T ss_pred EEeeccCCCc-----ccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHHHHHHHHHhhhHHHHH
Confidence 9999988864 578888999999999999999999999999999 88 78999999999999999999999999
Q ss_pred HHHHHcCCceeeecCCCccccccCC---------------ceEEeccCCCceeCCCCCCCCcCCCCCCCCcceEEEEEcC
Q 001250 939 KALVEVGLEGAFSPQDYLNFFCLGN---------------REVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQP 1003 (1114)
Q Consensus 939 ~~L~~aGv~~~~~P~~Yl~f~~L~~---------------HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEIav~i~dp 1003 (1114)
++|++.|++. .+|.+|++|+|+++ |+|+||+|| +.++|||||||+|||.|+|||||||++||+
T Consensus 664 ~~Lka~g~d~-~~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvDD-~~vIIGSANINqRSm~G~RDSEIA~~~~d~ 741 (887)
T KOG1329|consen 664 KALKAVGLDP-ADYIDFLGLRCLGNREEQAQRLRREMIYVHSKLMIVDD-EYVIIGSANINQRSMLGNRDSEIAMGIYDT 741 (887)
T ss_pred HHHHHhcCCc-cccceeeeeeeeeccccccccceEEEEEEeeeeEEecC-CEEEEeecccchhhccCCccceeEEEEecc
Confidence 9999999885 35678899999753 789999999 789999999999999999999999999999
Q ss_pred cchhhcccCCCchhHHHHHHHHHHHHhCCCccccCCCcchHHHHHHHHHHHhchhhhhhhcccccccccccCCcccCCCC
Q 001250 1004 EYTWARMKRHPYGQIYGYRMSLWAEHLGYIEDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKG 1083 (1114)
Q Consensus 1004 ~~~~a~~~~~~~g~i~~lR~~Lw~EHLG~~~~~f~~p~sle~v~~v~~~ae~n~~~~a~~~~~~~~GhLv~yP~~~~~~g 1083 (1114)
+++++.+++.++|||++|||+||+||||+.+++|.+|++++|++.|+.+++++|..||+++.+.++|||+.||+++.++|
T Consensus 742 ~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec~dpv~d~~~~~W~~~a~~n~~~y~~~f~~yP~~~~~~g 821 (887)
T KOG1329|consen 742 NHVWSKMNGRPYGFIYGLRMSLWREHLGLLDDAFEEPESLECEDPVRDLFEDLWQRYAARNTTIYEGHFRCYPIDVVRTG 821 (887)
T ss_pred cchhhccCCcchhHHHHHHHHHHHHHhCCCcccccCcchhhhhhhHHHHHHHHHHHHHhhhhhhhhceEEEcccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCceeccc-cccCcCCCC
Q 001250 1084 KVRPIPGYETFPDVGGNIVGSF-FAIQENLTI 1114 (1114)
Q Consensus 1084 ~~~~lpg~~~fpd~~~~i~g~~-~~~~~~lt~ 1114 (1114)
+++++||.++|||++|+|.|.+ .++|++||+
T Consensus 822 ~~~~~~~~~~~pd~~~~~~~~~~~~~~~~lt~ 853 (887)
T KOG1329|consen 822 KVTELPGDETFPDTLGKIIGSKSDALPENLTT 853 (887)
T ss_pred ceeecCCccccccccccccccccccCCccccc
Confidence 9999999999999999999997 699999986
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=2.2e-94 Score=875.60 Aligned_cols=513 Identities=29% Similarity=0.480 Sum_probs=403.2
Q ss_pred CCCCCcc----cCCeeEEcccCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCC
Q 001250 506 GTYFPLR----KGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPA 581 (1114)
Q Consensus 506 ~t~~P~r----~Gn~V~ly~Dg~~~~~~~~~~~~~~g~~y~~g~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~ 581 (1114)
.+|+|+| .||+++||.||.. .|++|++||++||++|+|++|||+|++||+|+....
T Consensus 321 ~SFAP~r~~~~~gN~vk~LvDG~d--------------------yF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D~ 380 (1068)
T PLN02866 321 GSFAPPRGLTEDGSQAQWFIDGHA--------------------AFEAIASAIENAKSEIFITGWWLCPELYLRRPFHDH 380 (1068)
T ss_pred CCcCCCccccCCCCEEEEEeCHHH--------------------HHHHHHHHHHhcccEEEEEEccCCceEEEEecCCCc
Confidence 6899999 6999999999863 699999999999999999999999999999964334
Q ss_pred hHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccccccccCcHHHHH-HH-hcCCcEEEEccCccCccccccccccc
Q 001250 582 LDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRR-VF-KHSSVKVLLCPRIAGKRHSWAKQKEV 659 (1114)
Q Consensus 582 ~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~d~~~~~-~~-~h~gV~v~l~P~~~~~~~~~~~~~~~ 659 (1114)
.+.+|+++|++||++||+||||+||+.+....+ ....+++ ++ .|+||+|..+|... + ..
T Consensus 381 ~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~----------~S~~~k~~L~~lh~gI~V~r~P~~~----~-----~~ 441 (1068)
T PLN02866 381 ESSRLDSLLEAKAKQGVQIYILLYKEVALALKI----------NSVYSKRRLLGIHENVKVLRYPDHF----S-----SG 441 (1068)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEEECcccccccc----------CchhhHHHHHHhCCCeEEEecCccc----c-----cC
Confidence 789999999999999999999999997642111 1122222 22 47899998776531 1 12
Q ss_pred ccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCCCcccc-cccccCCCCCCCcccCC------------CC
Q 001250 660 GTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRT-LQTLHKDDYHNPTFTGN------------TT 726 (1114)
Q Consensus 660 ~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l~~~-l~~~~~~Dy~np~~~~~------------~~ 726 (1114)
.++|||||||||||+ .||||||||||.|||||++|++.|. ...|+++||.|++.... +.
T Consensus 442 ~ln~RhHRKIVVIDg--------~IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR~ 513 (1068)
T PLN02866 442 VYLWSHHEKLVIVDY--------QICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDELDRR 513 (1068)
T ss_pred cccccCCCCeEEECC--------CEEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccccccc
Confidence 368999999999999 7999999999999999999999874 35689999999976431 34
Q ss_pred CCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcCCCCccc----cC---------CC--------------c-------
Q 001250 727 GCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKK----LK---------SG--------------D------- 772 (1114)
Q Consensus 727 ~~pr~PWHDvh~rVeGPAA~Dl~~~F~qRWn~a~~~~~~~~----L~---------~~--------------~------- 772 (1114)
..||||||||||+|+||||+||+++|++|||.+++...-.+ |. .+ .
T Consensus 514 ~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1068)
T PLN02866 514 KYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQKGIA 593 (1068)
T ss_pred cCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCcccccccccccccccccccccccccccccccccccccccccc
Confidence 56889999999999999999999999999998876531000 00 00 0
Q ss_pred --hhh---hhhccCCCccCCC-------------------------------------CCCC------------------
Q 001250 773 --DAL---LRIERIPGIIGIS-------------------------------------DAPS------------------ 792 (1114)
Q Consensus 773 --~~l---l~~~~~p~~~~~~-------------------------------------~~p~------------------ 792 (1114)
+.. .....+|..++.+ ..+.
T Consensus 594 ~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 673 (1068)
T PLN02866 594 RQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSVKMSS 673 (1068)
T ss_pred ccccccccccccccccCCCCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0000001000000 0000
Q ss_pred ----------------------------CcCCCCCCceEEEEeecCCcccCCCCCCchhhcccccccCccccchHHHHHH
Q 001250 793 ----------------------------VRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTA 844 (1114)
Q Consensus 793 ----------------------------~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~~~~~lv~gk~~~~e~sI~~A 844 (1114)
......+++.+||+||++.||+.. + .+|+||++|
T Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~G~-~-----------------~~E~SI~~A 735 (1068)
T PLN02866 674 AERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSAGT-S-----------------QVEESIHAA 735 (1068)
T ss_pred cccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccCCC-C-----------------chHHHHHHH
Confidence 000113468999999999998631 0 158999999
Q ss_pred HHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCC---CCC--Cchhh
Q 001250 845 YVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPE---GVP--TGAAT 919 (1114)
Q Consensus 845 Yl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Pe---g~p--~~~av 919 (1114)
|+++|++||||||||||||++++. .+..+.|+|+.+|+++|++|++++++|+||||||++|+ +.+ ++.++
T Consensus 736 Yi~~I~~A~hfIYIENQFFis~~~-----~~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~~~sv 810 (1068)
T PLN02866 736 YCSLIEKAEHFIYIENQFFISGLS-----GDDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGAASV 810 (1068)
T ss_pred HHHHHHhcccEEEEeccccccccc-----ccccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCccchhH
Confidence 999999999999999999999853 24578999999999999999999999999999999997 232 45689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCceeeecCCCccccccCC-----------------ceEEeccCCCceeCCCCC
Q 001250 920 QRILFWQHKTMQMMYETIYKALVEV-GLEGAFSPQDYLNFFCLGN-----------------REVIDQTDTSLSGNPTAP 981 (1114)
Q Consensus 920 q~il~wq~~tm~~~~~si~~~L~~a-Gv~~~~~P~~Yl~f~~L~~-----------------HsK~~ivDd~~~~~IGSA 981 (1114)
|+||+||++||++|+.+|+++|+++ |+ .|.+|++|||||+ |+|++++|| ++++||||
T Consensus 811 r~Im~~Q~~tI~rG~~Si~~~L~~~~g~----~p~dYisf~~LRn~~~l~~~~~~vteqIYVHsK~~IvDD-~~~iiGSa 885 (1068)
T PLN02866 811 RAIMHWQYRTICRGKNSILHNLYDLLGP----KTHDYISFYGLRAYGRLFEGGPLATSQIYVHSKIMIVDD-RAALIGSA 885 (1068)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCC----CHHHeEeeecccccccccCCCcccceeeEEEeeEEEEcC-cEEEEccc
Confidence 9999999999999999999999985 43 3678999999975 679999999 79999999
Q ss_pred CCCcCCCCCCCCcceEEEEEcCcchhhcccC---CCchhHHHHHHHHHHHHhCCCcc---ccCCCcchHHHH-HHHHHHH
Q 001250 982 NTPERSMEGTRDTEIAMGAYQPEYTWARMKR---HPYGQIYGYRMSLWAEHLGYIED---CFGQPETLECVR-KVRSVGE 1054 (1114)
Q Consensus 982 NiN~RSM~G~rDsEIav~i~dp~~~~a~~~~---~~~g~i~~lR~~Lw~EHLG~~~~---~f~~p~sle~v~-~v~~~ae 1054 (1114)
|||+|||.|+|||||||+++|++++...+++ .++++|++||++||+||||+..+ .+.+|.+-+.++ .|+..|.
T Consensus 886 NiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~~~DP~~d~~~k~~W~~~A~ 965 (1068)
T PLN02866 886 NINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDKIIDPVCDTTYKDLWMATAK 965 (1068)
T ss_pred cccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHHHhCCCchhhhcccCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999987665554 45679999999999999999764 346777766774 5788887
Q ss_pred hchhh---------------------hh----------------------------------hhcccccccccccCCccc
Q 001250 1055 NNWQQ---------------------FA----------------------------------ADDQSEMRSHLIKYPVEV 1079 (1114)
Q Consensus 1055 ~n~~~---------------------~a----------------------------------~~~~~~~~GhLv~yP~~~ 1079 (1114)
+|... |. .++++.++||||.||+.|
T Consensus 966 ~Nt~Iy~~vF~c~P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~~~~~l~~I~G~lV~fPL~F 1045 (1068)
T PLN02866 966 TNTDIYQDVFSCIPNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSDPMERLKSVRGHLVSFPLDF 1045 (1068)
T ss_pred HHHHHHHHhcCCCCCcccccHHHHHHHhhhcccccCccccccccccccccccccccchhhhHHHHHhhceEEEEechhhh
Confidence 77631 11 134788999999999999
Q ss_pred CCCCCccCCCCCCC
Q 001250 1080 DRKGKVRPIPGYET 1093 (1114)
Q Consensus 1080 ~~~g~~~~lpg~~~ 1093 (1114)
++++.++|.-+..+
T Consensus 1046 l~~E~L~p~~~~~e 1059 (1068)
T PLN02866 1046 MCQEDLRPVFNESE 1059 (1068)
T ss_pred hhhccCCCCcCccc
Confidence 99999887666443
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=1e-47 Score=457.48 Aligned_cols=332 Identities=24% Similarity=0.318 Sum_probs=259.3
Q ss_pred CCCCcccCCeeEEcccCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHH
Q 001250 507 TYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTL 586 (1114)
Q Consensus 507 t~~P~r~Gn~V~ly~Dg~~~~~~~~~~~~~~g~~y~~g~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL 586 (1114)
+.+|...||+|++|.||.+ .|++++++|++||++|+|++|+ +++|. .+.++
T Consensus 132 ~~~p~~~~n~~~ll~~g~~--------------------~~~~l~~~I~~Ak~~I~i~~yi-------~~~d~--~g~~i 182 (509)
T PRK12452 132 GGGPAADRTTTKLLTNGDQ--------------------TFSEILQAIEQAKHHIHIQYYI-------YKSDE--IGTKV 182 (509)
T ss_pred cCCcccCCCEEEEeCCHHH--------------------HHHHHHHHHHHhCCEEEEEEEE-------EeCCc--HHHHH
Confidence 5689999999999999863 7999999999999999999885 45665 78999
Q ss_pred HHHHHHHhccCCEEEEEEecCCCcccccccccccccccCcHHHHHHHhcCCcEEEE-ccCccCccccccccccccccccc
Q 001250 587 GELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLL-CPRIAGKRHSWAKQKEVGTIYTH 665 (1114)
Q Consensus 587 ~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~d~~~~~~~~h~gV~v~l-~P~~~~~~~~~~~~~~~~~~~rH 665 (1114)
.++|++||+|||+|||| +|+.|+... .....+.++++||+|.. .|... ++. ....++||
T Consensus 183 ~~aL~~aa~rGV~VRiL-~D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~~----~~~---~~~~n~Rn 242 (509)
T PRK12452 183 RDALIKKAKDGVIVRFL-YDGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIFS----AWL---LETVNYRN 242 (509)
T ss_pred HHHHHHHHHCCCEEEEE-EECCCCCCC------------CHHHHHHHHhCCeEEEEecCccc----ccc---cccccCCC
Confidence 99999999999999999 699887421 24466678899999974 66531 111 23468999
Q ss_pred ccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHHH
Q 001250 666 HQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAA 745 (1114)
Q Consensus 666 HQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPAA 745 (1114)
|||++|||+ .+||+||+|+++++... .....+|||+|++|+||+|
T Consensus 243 HRKi~VIDg--------~ia~~GG~Ni~d~y~~~---------------------------~~~~~~WrD~~~~i~Gp~V 287 (509)
T PRK12452 243 HRKIVIVDG--------EIGFTGGLNVGDEYLGR---------------------------SKKFPVWRDSHLKVEGKAL 287 (509)
T ss_pred CCeEEEEcC--------CEEEeCCcccchhhcCC---------------------------CCCCCCceEEEEEEECHHH
Confidence 999999999 79999999999954322 1235789999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCccccCCCchhhhhhccCCCccCCCCCCCCcCCCCCCceEEEEeecCCcccCCCCCCchhhc
Q 001250 746 YDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEAT 825 (1114)
Q Consensus 746 ~Dl~~~F~qRWn~a~~~~~~~~L~~~~~~ll~~~~~p~~~~~~~~p~~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~~ 825 (1114)
++++..|.++|+.+++... ...+.. .......|. .....+...+|++.+.+..
T Consensus 288 ~~l~~~F~~dW~~~~~~~~---~~~~~~-~~~~~~~~~----------~~~~~~~~~~q~~~sgp~~------------- 340 (509)
T PRK12452 288 YKLQAIFLEDWLYASSGLN---TYSWDP-FMNRQYFPG----------KEISNAEGAVQIVASGPSS------------- 340 (509)
T ss_pred HHHHHHHHHHHHHhhCccc---cccccc-ccchhcCCC----------ccccCCCeEEEEEeCCCCc-------------
Confidence 9999999999998765310 000000 000000010 0011234578998886532
Q ss_pred ccccccCccccchHHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEE
Q 001250 826 SKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIV 905 (1114)
Q Consensus 826 ~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IV 905 (1114)
.+.+|+++|+++|.+||++|||+||||+++. ++..+|..|+ .+||+|+||
T Consensus 341 -----------~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~-----------------~l~~aL~~Aa--~rGV~Vrii 390 (509)
T PRK12452 341 -----------DDKSIRNTLLAVMGSAKKSIWIATPYFIPDQ-----------------ETLTLLRLSA--ISGIDVRIL 390 (509)
T ss_pred -----------hhHHHHHHHHHHHHHhhhEEEEECCccCCCH-----------------HHHHHHHHHH--HcCCEEEEE
Confidence 1468999999999999999999999999984 7889998875 579999999
Q ss_pred ecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCceEEeccCCCceeCCCCCCCCc
Q 001250 906 IPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPE 985 (1114)
Q Consensus 906 lP~~Peg~p~~~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~ 985 (1114)
+|..+|.. .+..+.+++++.|+++|++++.+...++ |+|++++|+ .+++|||+|||.
T Consensus 391 ~p~~~D~~---------------~~~~a~~~~~~~L~~aGv~I~~y~~~~l-------HaK~~ivD~-~~a~vGS~Nld~ 447 (509)
T PRK12452 391 YPGKSDSI---------------ISDQASQSYFTPLLKAGASIYSYKDGFM-------HAKIVLVDD-KIATIGTANMDV 447 (509)
T ss_pred cCCCCChH---------------HHHHHHHHHHHHHHHcCCEEEEecCCCe-------eeeEEEECC-CEEEEeCcccCH
Confidence 99988751 2345677889999999999975544555 999999998 799999999999
Q ss_pred CCCCCCCCcceEEEEEcCc
Q 001250 986 RSMEGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus 986 RSM~G~rDsEIav~i~dp~ 1004 (1114)
||+. +|+|+++.+++++
T Consensus 448 RS~~--~n~E~~~~i~~~~ 464 (509)
T PRK12452 448 RSFE--LNYEIISVLYESE 464 (509)
T ss_pred hHhh--hhhhccEEEECHH
Confidence 9998 9999999999875
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=1.7e-46 Score=445.44 Aligned_cols=329 Identities=21% Similarity=0.274 Sum_probs=258.2
Q ss_pred CCCCcccCCeeEEcccCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHH
Q 001250 507 TYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTL 586 (1114)
Q Consensus 507 t~~P~r~Gn~V~ly~Dg~~~~~~~~~~~~~~g~~y~~g~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL 586 (1114)
+.+|...||+|++|.||.+ .|++|+++|++||++|+|++|+ +++|. .+.++
T Consensus 108 ~~~~~~~~n~v~ll~~g~~--------------------~~~~l~~~I~~Ak~~I~l~~yi-------~~~d~--~g~~i 158 (483)
T PRK01642 108 QGIPGLKGNQLRLLTNGDE--------------------TFQAIIRDIELARHYILMEFYI-------WRPDG--LGDQV 158 (483)
T ss_pred cCCCccCCCEEEEEcCHHH--------------------HHHHHHHHHHHhhcEEEEEEEE-------EccCC--cHHHH
Confidence 5678999999999999863 7999999999999999999885 45665 78999
Q ss_pred HHHHHHHhccCCEEEEEEecCCCcccccccccccccccCcHHHHHHHhcCCcEEEE-ccCccCccccccccccccccccc
Q 001250 587 GELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLL-CPRIAGKRHSWAKQKEVGTIYTH 665 (1114)
Q Consensus 587 ~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~d~~~~~~~~h~gV~v~l-~P~~~~~~~~~~~~~~~~~~~rH 665 (1114)
.++|++||+|||+|||| +|+.|+... ..+...+.++..||+|.. .|.... ++. ....++|+
T Consensus 159 ~~aL~~aa~rGV~VriL-~D~~Gs~~~-----------~~~~~~~~L~~~Gi~v~~~~p~~~~---~~~---~~~~n~Rn 220 (483)
T PRK01642 159 AEALIAAAKRGVRVRLL-YDSIGSFAF-----------FRSPYPEELRNAGVEVVEFLKVNLG---RVF---RRRLDLRN 220 (483)
T ss_pred HHHHHHHHHCCCEEEEE-EECCCCCCC-----------CcHHHHHHHHHCCCEEEEecCCCcc---ccc---cccccccc
Confidence 99999999999999999 698887422 123355678889999985 464211 111 23467899
Q ss_pred ccceEEEcCCCCCCCccEEEEEcccccCC-CcCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHH
Q 001250 666 HQKTVIVDADAGYNRRKIIAFVGGLDLCD-GRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPA 744 (1114)
Q Consensus 666 HQKiVVID~~~~~~~r~~VAFvGGiDL~d-gRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPA 744 (1114)
|||++|||+ .+||+||+|+++ ++.... ...++|||+|++|+||+
T Consensus 221 HrKi~VIDg--------~ia~~Gg~Ni~d~~y~~~~---------------------------~~~~~w~D~~~~i~Gp~ 265 (483)
T PRK01642 221 HRKIVVIDG--------YIAYTGSMNVVDPEYFKQD---------------------------PGVGQWRDTHVRIEGPV 265 (483)
T ss_pred CceEEEEcC--------CEEEeCCcccCCHHHhCCC---------------------------CCCCCcEEEEEEEEcHH
Confidence 999999999 799999999999 544321 23578999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCccccCCCchhhhhhccCCCccCCCCCCCCcCCCCCCceEEEEeecCCcccCCCCCCchhh
Q 001250 745 AYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEA 824 (1114)
Q Consensus 745 A~Dl~~~F~qRWn~a~~~~~~~~L~~~~~~ll~~~~~p~~~~~~~~p~~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~ 824 (1114)
|++++..|.++|+.++++.. ...... . ..+ + ....+...+|++.+.|..
T Consensus 266 v~~l~~~F~~dW~~~~~~~~---~~~~~~----~-~~~--------~---~~~~~~~~~qi~~sgP~~------------ 314 (483)
T PRK01642 266 VTALQLIFAEDWEWETGERI---LPPPPD----V-LIM--------P---FEEASGHTVQVIASGPGD------------ 314 (483)
T ss_pred HHHHHHHHHHHHHHHhCccc---CCCCcc----c-ccC--------C---ccCCCCceEEEEeCCCCC------------
Confidence 99999999999998866410 000000 0 000 0 011223568988776532
Q ss_pred cccccccCccccchHHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEE
Q 001250 825 TSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYI 904 (1114)
Q Consensus 825 ~~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~I 904 (1114)
.+..|+++|+++|.+||++|||+++||+++. +|..+|..|+ .+||+|.|
T Consensus 315 ------------~~~~~~~~~~~~I~~A~~~I~I~tpYfip~~-----------------~i~~aL~~Aa--~rGV~Vri 363 (483)
T PRK01642 315 ------------PEETIHQFLLTAIYSARERLWITTPYFVPDE-----------------DLLAALKTAA--LRGVDVRI 363 (483)
T ss_pred ------------hhhHHHHHHHHHHHHhccEEEEEcCCcCCCH-----------------HHHHHHHHHH--HcCCEEEE
Confidence 1457999999999999999999999999874 7899998875 57899999
Q ss_pred EecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCceEEeccCCCceeCCCCCCCC
Q 001250 905 VIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTP 984 (1114)
Q Consensus 905 VlP~~Peg~p~~~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN 984 (1114)
|+|.++|.. .+..+.+++++.|.++|++++.+...++ |+|++++|+ .+++|||+|+|
T Consensus 364 l~p~~~d~~---------------~~~~~~~~~~~~L~~~Gv~I~~y~~~~~-------HaK~~ivD~-~~~~vGS~N~d 420 (483)
T PRK01642 364 IIPSKNDSL---------------LVFWASRAFFTELLEAGVKIYRYEGGLL-------HTKSVLVDD-ELALVGTVNLD 420 (483)
T ss_pred EeCCCCCcH---------------HHHHHHHHHHHHHHHcCCEEEEeCCCce-------EeEEEEECC-CEEEeeCCcCC
Confidence 999988752 2345677889999999999975544555 999999998 79999999999
Q ss_pred cCCCCCCCCcceEEEEEcCc
Q 001250 985 ERSMEGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus 985 ~RSM~G~rDsEIav~i~dp~ 1004 (1114)
.||+. +|+|+++.++|++
T Consensus 421 ~rS~~--~N~E~~~~i~d~~ 438 (483)
T PRK01642 421 MRSFW--LNFEITLVIDDTG 438 (483)
T ss_pred HhHHh--hhhcceEEEECHH
Confidence 99998 9999999999875
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=1.2e-44 Score=420.45 Aligned_cols=341 Identities=18% Similarity=0.218 Sum_probs=255.2
Q ss_pred CcccCCeeEEcccCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHH
Q 001250 510 PLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGEL 589 (1114)
Q Consensus 510 P~r~Gn~V~ly~Dg~~~~~~~~~~~~~~g~~y~~g~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dL 589 (1114)
+.+.||+|+|+.||++ .|++++++|++||++|+|+.|++ .+|. .+..|.++
T Consensus 3 ~~~~gN~v~ll~~G~e--------------------~~~~l~~~I~~Ak~~I~i~~yi~-------~~d~--~g~~l~~a 53 (411)
T PRK11263 3 SWREGNRIQLLENGEQ--------------------YYPRVFEAIAAAQEEILLETFIL-------FEDK--VGKQLHAA 53 (411)
T ss_pred cccCCCeEEEEeCHHH--------------------HHHHHHHHHHHhCCEEEEEEEEE-------ecCc--hHHHHHHH
Confidence 6789999999999863 69999999999999999999865 3444 68999999
Q ss_pred HHHHhccCCEEEEEEecCCCcccccccccccccccCcHHHHHHHhcCCcEEEE-ccCccCcccccccccccccccccccc
Q 001250 590 LRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLL-CPRIAGKRHSWAKQKEVGTIYTHHQK 668 (1114)
Q Consensus 590 Lk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~d~~~~~~~~h~gV~v~l-~P~~~~~~~~~~~~~~~~~~~rHHQK 668 (1114)
|++||++||+|+|| +|..++... .....+.++++||+|.. .|... ++ .....++.++|+|
T Consensus 54 L~~aa~rGV~Vril-~D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~~-----~~-~~~~~~~~R~HrK 114 (411)
T PRK11263 54 LLAAAQRGVKVEVL-VDGYGSPDL------------SDEFVNELTAAGVRFRYFDPRPR-----LL-GMRTNLFRRMHRK 114 (411)
T ss_pred HHHHHHCCCEEEEE-EECCCCCCC------------CHHHHHHHHHCCeEEEEeCCccc-----cc-ccccccccCCcce
Confidence 99999999999999 588776321 24556778899999975 56421 11 0112234599999
Q ss_pred eEEEcCCCCCCCccEEEEEcccccCCCcCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHHHHHH
Q 001250 669 TVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDV 748 (1114)
Q Consensus 669 iVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPAA~Dl 748 (1114)
++|||+ .+|||||+|++++++.. .....|+|+|++|+||+|.++
T Consensus 115 iiVIDg--------~~a~vGg~N~~~~~~~~----------------------------~g~~~w~D~~v~i~Gp~V~~l 158 (411)
T PRK11263 115 IVVIDG--------RIAFVGGINYSADHLSD----------------------------YGPEAKQDYAVEVEGPVVADI 158 (411)
T ss_pred EEEEcC--------CEEEEcCeEchHhhccc----------------------------cCCCCceEEEEEEECHHHHHH
Confidence 999999 79999999999854431 113579999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccccCCCchhhhhhccCCCccCCCCCCCCcCCCCCCceEEEEeecCCcccCCCCCCchhhcccc
Q 001250 749 LTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKN 828 (1114)
Q Consensus 749 ~~~F~qRWn~a~~~~~~~~L~~~~~~ll~~~~~p~~~~~~~~p~~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~~~~~ 828 (1114)
+..|.+.|....... .. +. . ...+ + .....+...+|++.+.+..
T Consensus 159 ~~~f~~~w~~~~~~~---~~--~~----~-~~~~--------~--~~~~~g~~~~~~v~~~p~~---------------- 202 (411)
T PRK11263 159 HQFELEALPGQSAAR---RW--WR----R-HHRA--------E--ENRQPGEAQALLVWRDNEE---------------- 202 (411)
T ss_pred HHHHHHHHhhcccch---hh--hc----c-cccC--------c--ccCCCCCeEEEEEECCCcc----------------
Confidence 999999997532110 00 00 0 0000 0 0011233456666443211
Q ss_pred cccCccccchHHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecC
Q 001250 829 LVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPM 908 (1114)
Q Consensus 829 lv~gk~~~~e~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~ 908 (1114)
....|+++|+++|.+||+.|||+|+||+++. .|..+|..|+ .+||+|.||+|.
T Consensus 203 --------~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~-----------------~l~~aL~~Aa--~RGV~V~ii~~~ 255 (411)
T PRK11263 203 --------HRDDIERHYLKALRQARREVIIANAYFFPGY-----------------RLLRALRNAA--RRGVRVRLILQG 255 (411)
T ss_pred --------hHHHHHHHHHHHHHHhceEEEEEecCcCCCH-----------------HHHHHHHHHH--HCCCEEEEEeCC
Confidence 1358999999999999999999999999974 7899998875 579999999998
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCceEEeccCCCceeCCCCCCCCcCCC
Q 001250 909 WPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPERSM 988 (1114)
Q Consensus 909 ~Peg~p~~~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~RSM 988 (1114)
.||.. .+..+.+.+++.|+++|++++.+...++ |+|++++|+ .+++|||+|||.|||
T Consensus 256 ~~d~~---------------~~~~a~~~~~~~Ll~~Gv~I~~y~~~~l-------HaK~~viD~-~~~~vGS~Nld~rS~ 312 (411)
T PRK11263 256 EPDMP---------------IVRVGARLLYNYLLKGGVQIYEYCRRPL-------HGKVALMDD-HWATVGSSNLDPLSL 312 (411)
T ss_pred CCCcH---------------HHHHHHHHHHHHHHHCCCEEEEecCCCc-------eeEEEEECC-CEEEEeCCcCCHHHh
Confidence 87641 2344567789999999999964433444 999999999 799999999999999
Q ss_pred CCCCCcceEEEEEcCcchhhcccCCCchhHHHHHHHHHHHHhC
Q 001250 989 EGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHLG 1031 (1114)
Q Consensus 989 ~G~rDsEIav~i~dp~~~~a~~~~~~~g~i~~lR~~Lw~EHLG 1031 (1114)
. +|+|+++.++|++.. .++......+++|+.-
T Consensus 313 ~--lN~E~~~~i~d~~~a---------~~l~~~~~~~~~~~s~ 344 (411)
T PRK11263 313 S--LNLEANLIIRDRAFN---------QTLRDNLNGLIAADCQ 344 (411)
T ss_pred h--hhhhcCEEEeCHHHH---------HHHHHHHHHHHHhhCE
Confidence 8 999999999988642 2344455566665644
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=2.6e-34 Score=336.48 Aligned_cols=332 Identities=23% Similarity=0.316 Sum_probs=244.6
Q ss_pred ccCCeeEEcccCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHH
Q 001250 512 RKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLR 591 (1114)
Q Consensus 512 r~Gn~V~ly~Dg~~~~~~~~~~~~~~g~~y~~g~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk 591 (1114)
..++.++++.++.+ .|.++.++|++|++.|+|+.+ ++.++. .+..+.+.|.
T Consensus 57 ~~~~~~~~l~~~~~--------------------~~~~~~~~i~~a~~~I~~~~~-------i~~~d~--~~~~i~~~l~ 107 (438)
T COG1502 57 ISGNGVDLLKDGAD--------------------AFAALIELIEAAKKSIYLQYY-------IWQDDE--LGREILDALI 107 (438)
T ss_pred CCCCceEEecCHHH--------------------HHHHHHHHHHHHhhEEEEEEE-------EEeCCh--hHHHHHHHHH
Confidence 68889999988753 699999999999999999877 455655 7899999999
Q ss_pred HHhccCCEEEEEEecCCCcccccccccccccccCcHHHHHHHhcCCc-EEEE-ccCccCcccccccccccccccccccce
Q 001250 592 SKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSV-KVLL-CPRIAGKRHSWAKQKEVGTIYTHHQKT 669 (1114)
Q Consensus 592 ~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~d~~~~~~~~h~gV-~v~l-~P~~~~~~~~~~~~~~~~~~~rHHQKi 669 (1114)
++|++||+||+|+ |+.++... ........+++++| .+.. .|..... . .....+.++|+|+
T Consensus 108 ~~a~~gv~vr~l~-D~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~---~---~~~~~~~r~H~K~ 169 (438)
T COG1502 108 EAAKRGVEVRLLL-DDIGSTRG-----------LLKSLLALLKRAGIEEVRLFNPASPRP---L---RFRRLNRRLHRKI 169 (438)
T ss_pred HHHHcCCEEEEEE-ecCCCccc-----------ccHHHHHHHhcCCceEEEecCCccccc---c---hhhhhhccccceE
Confidence 9999999999995 77775211 12345567788999 5543 5553210 0 1234578999999
Q ss_pred EEEcCCCCCCCccEEEEEcccccCCCcCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHHHHHHH
Q 001250 670 VIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVL 749 (1114)
Q Consensus 670 VVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPAA~Dl~ 749 (1114)
+|||+ .++|+||.|+.+.++... ....+|+|++++++||+|.++.
T Consensus 170 ~viD~--------~i~~vGg~N~~d~y~~~~---------------------------~~~~~~~D~~~~~~g~~v~~l~ 214 (438)
T COG1502 170 VVIDG--------KVAFVGGANIGDEYFHKD---------------------------KGLGYWRDLHVRITGPAVADLA 214 (438)
T ss_pred EEEcC--------CEEEecCcccchhhhccC---------------------------cCcccceeeeEEEECHHHHHHH
Confidence 99999 899999999999877541 1235999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccccCCCchhhhhhccCCCccCCCCCCCCcCCCCCCceEEEEeecCCcccCCCCCCchhhccccc
Q 001250 750 TNFEERWRKASKPHGIKKLKSGDDALLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNL 829 (1114)
Q Consensus 750 ~~F~qRWn~a~~~~~~~~L~~~~~~ll~~~~~p~~~~~~~~p~~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~~~~~l 829 (1114)
.+|.++|+...+... .+. .. ..+... + .. .........+|++.+.|.....
T Consensus 215 ~~f~~~w~~~~~~~~--~~~---~~-----~~~~~~--~-~~--~~~~~~~~~~~~~~~~P~~~~~-------------- 265 (438)
T COG1502 215 RLFIQDWNLESGSSK--PLL---AL-----VRPPLQ--S-LS--LLPVGRGSTVQVLSSGPDKGLG-------------- 265 (438)
T ss_pred HHHHHHhhhccCcCc--ccc---cc-----cccccc--c-cc--ccccccCcceEEEecCCccccc--------------
Confidence 999999998743210 010 00 000000 0 00 0011122336777776643110
Q ss_pred ccCccccchHHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecC-
Q 001250 830 VCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPM- 908 (1114)
Q Consensus 830 v~gk~~~~e~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~- 908 (1114)
.. ...+...|+++|.+|++.|+|++|||+++. ++..+|..|. .+|++|.|++|.
T Consensus 266 ---~~---~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~-----------------~~~~al~~a~--~~Gv~V~ii~~~~ 320 (438)
T COG1502 266 ---SE---LIELNRLLLKAINSARESILIATPYFVPDR-----------------ELLAALKAAA--RRGVDVRIIIPSL 320 (438)
T ss_pred ---hh---hhhHHHHHHHHHHhhceEEEEEcCCcCCCH-----------------HHHHHHHHHH--hcCCEEEEEeCCC
Confidence 00 112569999999999999999999999985 7888888864 578999999994
Q ss_pred -CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCC-CccccccCCceEEeccCCCceeCCCCCCCCcC
Q 001250 909 -WPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQD-YLNFFCLGNREVIDQTDTSLSGNPTAPNTPER 986 (1114)
Q Consensus 909 -~Peg~p~~~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~-Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~R 986 (1114)
.++. ..+..+++.++..|.+.|++++.++.+ |+ |+|++++|+ .+++|||+|||.|
T Consensus 321 ~~~d~---------------~~~~~~~~~~~~~l~~~gv~i~~~~~g~~l-------H~K~~iiD~-~~~~vGS~N~~~r 377 (438)
T COG1502 321 GANDS---------------AIVHAAYRAYLKELLEAGVKVYEYPGGAFL-------HSKVMIIDD-RTVLVGSANLDPR 377 (438)
T ss_pred CCCCh---------------HHHHHHHHHHHHHHHHhCCEEEEecCCCcc-------eeeEEEEcC-CEEEEeCCcCCHh
Confidence 3332 123357788999999999998655542 55 999999999 7899999999999
Q ss_pred CCCCCCCcceEEEEEcCc
Q 001250 987 SMEGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus 987 SM~G~rDsEIav~i~dp~ 1004 (1114)
||. +|+|++++++|++
T Consensus 378 S~~--lN~E~~~~i~d~~ 393 (438)
T COG1502 378 SLR--LNFEVGLVIEDPE 393 (438)
T ss_pred HHH--HhhhheeEEeCHH
Confidence 998 9999999999874
No 10
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=4.8e-31 Score=309.33 Aligned_cols=350 Identities=15% Similarity=0.123 Sum_probs=221.7
Q ss_pred CCcccCCeeEEcccCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHH
Q 001250 509 FPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGE 588 (1114)
Q Consensus 509 ~P~r~Gn~V~ly~Dg~~~~~~~~~~~~~~g~~y~~g~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~d 588 (1114)
+|+ .++.|+++.+|.+ .|++|+++|++||++|+|+.+.| .+|+ .|..|.+
T Consensus 20 ~~~-~~~~v~~l~~~~~--------------------f~~~Ll~~I~~Ak~~I~l~~y~~-------~~D~--~g~~il~ 69 (451)
T PRK09428 20 IPQ-SPDDVETLYSPAD--------------------FRETLLEKIASAKKRIYIVALYL-------EDDE--AGREILD 69 (451)
T ss_pred ccc-CcccEEEEcCHHH--------------------HHHHHHHHHHhcCCeEEEEEEEe-------cCCc--hHHHHHH
Confidence 444 5778999988763 69999999999999999999854 4555 7899999
Q ss_pred HHHHHh--ccCCEEEEEEecCCCc-ccccccccccccc-cCcHHHHHHHhc--CCcEEEEc--cCccCcccccccccccc
Q 001250 589 LLRSKS--QEGVRVLLLVWDDPTS-RSILGYKMDGVMQ-THDEETRRVFKH--SSVKVLLC--PRIAGKRHSWAKQKEVG 660 (1114)
Q Consensus 589 LLk~KA--~eGVrVrlLvwD~~~s-~~~lg~k~~gvm~-t~d~~~~~~~~h--~gV~v~l~--P~~~~~~~~~~~~~~~~ 660 (1114)
+|.+|+ ++||+|+||+ |.... +..+| ... .....+...++. +||+|.+. |.. ...
T Consensus 70 AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG-----~~~~~~~~~~~~~l~~~~~gv~v~~f~~p~~-----------~~e 132 (451)
T PRK09428 70 ALYQAKQQNPELDIKVLV-DWHRAQRGLIG-----AAASNTNADWYCEMAQEYPGVDIPVYGVPVN-----------TRE 132 (451)
T ss_pred HHHHHHhcCCCcEEEEEE-Ecccccccccc-----cCCCCcCHHHHHHHHHhCCCceEEEcCCccc-----------cch
Confidence 999874 5899999995 76321 11111 010 011334444544 36888764 221 012
Q ss_pred cccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEE
Q 001250 661 TIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKI 740 (1114)
Q Consensus 661 ~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rV 740 (1114)
.+.++|+|++|||+ .|+|+| .||.+.+.... ..+. .|.+++|
T Consensus 133 ~~gr~HrKi~IiD~--------~v~ysG-aNi~d~Yl~~~---------------------------~~~r--~Dry~~i 174 (451)
T PRK09428 133 ALGVLHLKGFIIDD--------TVLYSG-ASLNNVYLHQH---------------------------DKYR--YDRYHLI 174 (451)
T ss_pred hhhhceeeEEEECC--------CEEEec-ccccHHHhcCC---------------------------cccC--cceEEEE
Confidence 45689999999999 799997 79999665321 1111 3678889
Q ss_pred eCHHHHHHHHHHHHHHHHhcCCCCccccCC--Cch--hh-hhh----ccCCCccCCCCCCCCcCCCCCCceEEEEeecCC
Q 001250 741 DGPAAYDVLTNFEERWRKASKPHGIKKLKS--GDD--AL-LRI----ERIPGIIGISDAPSVRENDAESWHVQIFRSIDS 811 (1114)
Q Consensus 741 eGPAA~Dl~~~F~qRWn~a~~~~~~~~L~~--~~~--~l-l~~----~~~p~~~~~~~~p~~~~~~~~~~~vQv~RSi~~ 811 (1114)
+||+++++...|++.|..+++.. ..+.. ... .+ ..+ ...... .... .. ..+.-.+++...+..
T Consensus 175 ~g~~la~~~~~fi~~~~~~~~~v--~~l~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~--~~-~~~~~~~~v~p~~g~ 246 (451)
T PRK09428 175 RNAELADSMVNFIQQNLLNSPAV--NRLDQPNRPKTKEIKNDIRQFRQRLRDA---AYQF--QG-QANNDELSVTPLVGL 246 (451)
T ss_pred eCchHHHHHHHHHHHHhhccCcc--ccccccccccchhhHHHHHHHHHHHhhh---ccCc--cc-ccCCCCeEEeeeecc
Confidence 99999999999999998765421 01100 000 00 000 000000 0000 00 000112233222111
Q ss_pred cccCCCCCCchhhcccccccCccccchHHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHH
Q 001250 812 TSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIA 891 (1114)
Q Consensus 812 ~s~~~fP~~p~~~~~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa 891 (1114)
|+ ...+.+.++++|.+|++.|+|.|+||+++. .+..+|.
T Consensus 247 --------------------g~----~~~l~~~~~~li~~A~~~i~I~TPYF~p~~-----------------~l~~~L~ 285 (451)
T PRK09428 247 --------------------GK----KNLLNKTIFHLMASAEQKLTICTPYFNLPA-----------------ILVRNII 285 (451)
T ss_pred --------------------CC----chHHHHHHHHHHhccCcEEEEEeCCcCCCH-----------------HHHHHHH
Confidence 11 146889999999999999999999999985 7889998
Q ss_pred HHHHhCCCeEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHH----H---HHHHHHcC---CceeeecCCCcccccc
Q 001250 892 DKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYET----I---YKALVEVG---LEGAFSPQDYLNFFCL 961 (1114)
Q Consensus 892 ~aira~~gf~V~IVlP~~Peg~p~~~avq~il~wq~~tm~~~~~s----i---~~~L~~aG---v~~~~~P~~Yl~f~~L 961 (1114)
.|++ +|++|.||+|......--...-+.+..|. +.-.+|+. + +..|.++| ++++.++...+
T Consensus 286 ~a~~--rGv~V~Ii~~~~~andfy~~~d~~~~~~~--~~py~ye~~lr~f~~~~~~li~~G~l~v~i~~~~~~~~----- 356 (451)
T PRK09428 286 RLLR--RGKKVEIIVGDKTANDFYIPPDEPFKIIG--ALPYLYEINLRRFAKRLQYYIDNGQLNVRLWKDGDNSY----- 356 (451)
T ss_pred HHHh--cCCcEEEEcCCcccccCcCCCccHHHHhh--hhHHHHHHhhhhhHHHhhhhhhcCcceEEEEecCCCcc-----
Confidence 8764 67899999997621100000000111111 11112221 1 23566778 77764443334
Q ss_pred CCceEEeccCCCceeCCCCCCCCcCCCCCCCCcceEEEEEcCcch
Q 001250 962 GNREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQPEYT 1006 (1114)
Q Consensus 962 ~~HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEIav~i~dp~~~ 1006 (1114)
|+|.+.+|+ .|++|||+|+|.||+. +|+|+++.++|++..
T Consensus 357 --HaK~i~vD~-~~~~iGS~Nld~RS~~--ln~E~~l~i~d~~~~ 396 (451)
T PRK09428 357 --HLKGIWVDD-RWMLLTGNNLNPRAWR--LDLENALLIHDPKQE 396 (451)
T ss_pred --eEEEEEEeC-CEEEEcCCCCChhHhh--hcccceEEEECChHH
Confidence 999999998 7999999999999998 999999999998743
No 11
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=3.7e-31 Score=309.10 Aligned_cols=316 Identities=15% Similarity=0.135 Sum_probs=214.1
Q ss_pred hHHHHHHHHHhcccceEEEEEEEecceeEEeCCC--CChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccccccc
Q 001250 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS--PALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQ 623 (1114)
Q Consensus 546 ~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~--~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~ 623 (1114)
+|+.+.++|.+||++|+|+.+.|.+ ++. ...|.++.++|++||++||+|||| .|..+.
T Consensus 27 t~~~~~~lI~~Ak~~I~I~s~yf~~------~d~~~~~~G~~i~~aL~~aA~rGV~VRIL-~d~~~~------------- 86 (424)
T PHA02820 27 TFNFWREILSNTTKTLDISSFYWSL------SDEVGTNFGTMILNEIIQLPKRGVRVRIA-VNKSNK------------- 86 (424)
T ss_pred HHHHHHHHHHhhCcEEEEEeEEEec------CccccchhHHHHHHHHHHHHHCCCEEEEE-ECCCCC-------------
Confidence 7999999999999999999886532 221 124789999999999999999999 475321
Q ss_pred cCcHHHHHHHhcCCcEEEE-ccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCC
Q 001250 624 THDEETRRVFKHSSVKVLL-CPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHH 702 (1114)
Q Consensus 624 t~d~~~~~~~~h~gV~v~l-~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H 702 (1114)
.....+.|+.+||+|.. .+.. + ...++|+|++|||+ .++|+||.|+.. |+-+.
T Consensus 87 --~~~~~~~L~~aGv~v~~~~~~~------~-------~~~~~HrK~~VIDg--------~~~~iGS~Nid~-rsl~~-- 140 (424)
T PHA02820 87 --PLKDVELLQMAGVEVRYIDITN------I-------LGGVLHTKFWISDN--------THIYLGSANMDW-RSLTQ-- 140 (424)
T ss_pred --chhhHHHHHhCCCEEEEEecCC------C-------CcccceeeEEEECC--------CEEEEeCCcCCh-hhhhh--
Confidence 01223567789999975 3321 1 23679999999999 799999999965 54321
Q ss_pred CcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEE--eCHHHHHHHHHHHHHHHHhcCCCCccccCCCchhhhhhcc
Q 001250 703 PLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKI--DGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIER 780 (1114)
Q Consensus 703 ~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rV--eGPAA~Dl~~~F~qRWn~a~~~~~~~~L~~~~~~ll~~~~ 780 (1114)
.+|++++| +|++|.+++..|++.|+.+++... ..+.. .
T Consensus 141 ------------------------------n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~~----~~~~~------~ 180 (424)
T PHA02820 141 ------------------------------VKELGIAIFNNSNLAADLTQIFEVYWYLGVNNLP----YNWKN------F 180 (424)
T ss_pred ------------------------------CCceEEEEecchHHHHHHHHHHHHHHHhhccCCC----Ccccc------c
Confidence 14677776 799999999999999997754210 00000 0
Q ss_pred CCCccCCCCCCCCcCCCCCCceEEEEeecCCcccCCCCCCchhhcccccccCccccchHHHHHHHHHHHHhcccEEEEEe
Q 001250 781 IPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIEN 860 (1114)
Q Consensus 781 ~p~~~~~~~~p~~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~~~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~fIYIEN 860 (1114)
.+.... ...|.. ....+....+++.+.+.... +. ......++|+.+|.+||++|||++
T Consensus 181 ~~~~~~-~~~p~~-~~~~~~~~~~~~sssP~~~~-----------------~~---~r~~~~~~~l~~I~~Ak~~I~I~t 238 (424)
T PHA02820 181 YPLYYN-TDHPLS-LNVSGVPHSVFIASAPQQLC-----------------TM---ERTNDLTALLSCIRNASKFVYVSV 238 (424)
T ss_pred cccccc-cCCCcc-cccCCccceEEEeCCChhhc-----------------CC---CCCchHHHHHHHHHHHhhEEEEEE
Confidence 010000 000000 00011112344444332100 00 012468999999999999999999
Q ss_pred eeeccCCC-------CccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHH
Q 001250 861 QYFIGSSY-------NWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMM 933 (1114)
Q Consensus 861 QYFi~~~~-------~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~avq~il~wq~~tm~~~ 933 (1114)
+||+|+.. -|+ +|..||.+|+ +.+||+|+|++|.|++... +..+
T Consensus 239 pyfvP~~~~~~~~~~yw~-------------~i~~AL~~AA-~~RGV~VriLvp~~~d~~~---------------~~~a 289 (424)
T PHA02820 239 MNFIPIIYSKAGKILFWP-------------YIEDELRRAA-IDRKVSVKLLISCWQRSSF---------------IMRN 289 (424)
T ss_pred ccccceeeccCCcccchH-------------HHHHHHHHHH-HhCCCEEEEEEeccCCCCc---------------cHHH
Confidence 99999821 132 6888887643 3689999999999987632 2234
Q ss_pred HHHHHHHHHHcCCcee---e-ecC--CCccccccCCceEEeccCCCceeCCCCCCCCcCCCCCCCCcceEEEEEcC
Q 001250 934 YETIYKALVEVGLEGA---F-SPQ--DYLNFFCLGNREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQP 1003 (1114)
Q Consensus 934 ~~si~~~L~~aGv~~~---~-~P~--~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEIav~i~dp 1003 (1114)
+...++.|.++|+++. | +|. +.+. +.-.+|+|.+++|+ ++.|||||||.||+. +|.|+++.++++
T Consensus 290 ~~~~l~~L~~~gv~I~Vk~y~~p~~~~~~~-~~~f~HaK~~vvD~--~a~IGTsN~D~rsf~--~n~ev~~~i~~~ 360 (424)
T PHA02820 290 FLRSIAMLKSKNINIEVKLFIVPDADPPIP-YSRVNHAKYMVTDK--TAYIGTSNWTGNYFT--DTCGVSINITPD 360 (424)
T ss_pred HHHHHHHHhccCceEEEEEEEcCcccccCC-cceeeeeeEEEEcc--cEEEECCcCCHHHHh--ccCcEEEEEecC
Confidence 5567788898998873 3 331 1111 12235999999995 689999999999998 999999999986
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.98 E-value=9.7e-31 Score=301.42 Aligned_cols=317 Identities=14% Similarity=0.122 Sum_probs=207.4
Q ss_pred hhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCccccccccccccccc
Q 001250 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1114)
Q Consensus 545 ~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t 624 (1114)
.+|++++++|++||++|+|+.|++. ++++. .|.++.++|++||+|||+|||| +|..++
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~yi~~-----~~~d~--~g~~i~~aL~~aa~rGV~Vril-~D~~~~-------------- 88 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASFCCN-----LRSTP--EGRLILDKLKEAAESGVKVTIL-VDEQSG-------------- 88 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEEEec-----ccCCc--hHHHHHHHHHHhccCCCeEEEE-ecCCCC--------------
Confidence 4799999999999999999999631 34554 7899999999999999999999 586542
Q ss_pred CcHHHHHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCCCc
Q 001250 625 HDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPL 704 (1114)
Q Consensus 625 ~d~~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l 704 (1114)
....+.|+.+||++...... . .+.....|.|++|||+ ++||+||+||+++++.. .
T Consensus 89 --~~~~~~L~~~Gv~v~~~~~~------~-----~~~~~~~~~k~~IiDg--------~~~y~Gg~Ni~~~~~~~-~--- 143 (369)
T PHA03003 89 --DKDEEELQSSNINYIKVDIG------K-----LNNVGVLLGSFWVSDD--------RRCYIGNASLTGGSIST-I--- 143 (369)
T ss_pred --CccHHHHHHcCCEEEEEecc------c-----cCCCCceeeeEEEEcC--------cEEEEecCccCCcccCc-c---
Confidence 12345778899998642110 0 0001235789999999 79999999999955432 1
Q ss_pred ccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcCCCCccccCCCchhhhhhccCCCc
Q 001250 705 FRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIERIPGI 784 (1114)
Q Consensus 705 ~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPAA~Dl~~~F~qRWn~a~~~~~~~~L~~~~~~ll~~~~~p~~ 784 (1114)
...+.|+|. ||+|.+|+..|.+.|+.++++....... . ....+..
T Consensus 144 -----------------------~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~~~~~-----~--~~~~~~~ 188 (369)
T PHA03003 144 -----------------------KTLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVFNRLC-----C--ACCLPVS 188 (369)
T ss_pred -----------------------ccceeEecC-----cHHHHHHHHHHHHHHHhcCCCCcccccc-----c--ccCCccc
Confidence 124579993 9999999999999999775432000000 0 0000000
Q ss_pred cCCCCCCCCcCCCCCCceEEEEeecCCcccCCCCCCchhhcccccccCccccchHHHHHHHHHHHHhcccEEEEEeeeec
Q 001250 785 IGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFI 864 (1114)
Q Consensus 785 ~~~~~~p~~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~~~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~fIYIENQYFi 864 (1114)
. .. ....+ ...+++.+.|.... +. ....++++|+++|.+||++|+|++.||+
T Consensus 189 ~-----~~-~~~~~--~~~~~~~s~P~~~~-----------------~~---~~~~~~~~ll~~I~~Ak~~I~I~t~yf~ 240 (369)
T PHA03003 189 T-----KY-HINNP--IGGVFFSDSPEHLL-----------------GY---SRTLDADVVLHKIKSAKKSIDLELLSLV 240 (369)
T ss_pred c-----cc-cccCC--CcceEEecCChHHc-----------------CC---CCCcCHHHHHHHHHHHhhEEEEEEeccc
Confidence 0 00 00001 11223333321100 00 0125789999999999999999999998
Q ss_pred cCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHc
Q 001250 865 GSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEV 944 (1114)
Q Consensus 865 ~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~avq~il~wq~~tm~~~~~si~~~L~~a 944 (1114)
|.....+ . -....+|..+|.+|+ +.+||+|+|++|.+..... ...++++.|+++
T Consensus 241 P~~~~d~---~----~~~~~~i~~AL~~AA-a~RGV~VRILv~~~~~~~~------------------~~~~~~~~L~~~ 294 (369)
T PHA03003 241 PVIREDD---K----TTYWPDIYNALIRAA-INRGVKVRLLVGSWKKNDV------------------YSMASVKSLQAL 294 (369)
T ss_pred cEEeeCC---C----CccHHHHHHHHHHHH-HcCCCEEEEEEecCCcCCc------------------hhhhHHHHHHHc
Confidence 8621100 0 011236888888763 3689999999997632210 123467789999
Q ss_pred CCceeeecCCCccccccCCceEEeccCCCceeCCCCCCCCcCCCCCCCCcceEEEEEcCc
Q 001250 945 GLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus 945 Gv~~~~~P~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEIav~i~dp~ 1004 (1114)
|++... .+.+|...+|+|++++|+ +++.|||+||+.||+. .|.|+.+.++++.
T Consensus 295 G~~~~i----~vri~~~~~H~K~~VVD~-~~a~iGS~N~d~~s~~--~~~e~~~~~~~~~ 347 (369)
T PHA03003 295 CVGNDL----SVKVFRIPNNTKLLIVDD-EFAHITSANFDGTHYL--HHAFVSFNTIDKE 347 (369)
T ss_pred CCCCCc----eEeeecCCCCceEEEEcC-CEEEEeccccCchhhc--cCCCeEEecCChh
Confidence 943100 011111226999999998 7999999999999998 7999988776653
No 13
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.94 E-value=1.5e-27 Score=284.09 Aligned_cols=178 Identities=19% Similarity=0.286 Sum_probs=148.8
Q ss_pred CCCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeece--------------
Q 001250 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1114)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhG-------------- 347 (1114)
...+.+|+.||.++|+ +| |+|.|||||||+|+.+|+ +||||||+ |+.++.+||.+|
T Consensus 374 ~~~~~~~v~~nk~~L~RIY---PkG~RvdSSNynP~~~W~----~GcQMVALN~Qt~d~~M~LN~G~F~~NG~CGYVLKP 446 (598)
T PLN02230 374 ASYGADVIRFTQKNFLRIY---PKGTRFNSSNYKPQIGWM----SGAQMIAFNMQGYGRALWLMEGMFRANGGCGYVKKP 446 (598)
T ss_pred HhhhHHHHHhhhhhceeeC---CCCCcCCCCCCCchhHhc----CceEEeeecccCCChHHHhhcchhccCCCCCceECC
Confidence 4567899999999999 99 999999999999997777 99999999 999998887766
Q ss_pred -----------------------EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeee
Q 001250 348 -----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTF 400 (1114)
Q Consensus 348 -----------------------tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTr 400 (1114)
+|+|+|+.|.+|+.. ....+++.+. ..||||+|.|.| ....||+
T Consensus 447 ~~Lr~~~~~~~~fdP~~~~~~~~~L~V~VisGq~~~l~-~~k~~~~~~s--------~~DpyV~Vei~Gvp~D~~~~kT~ 517 (598)
T PLN02230 447 DFLMDAGPNGQDFYPKDNSCPKKTLKVKVCMGDGWLLD-FKKTHFDSYS--------PPDFFVRVGIAGAPVDEVMEKTK 517 (598)
T ss_pred HHhcCCCccccccCCCcCCCcCcEEEEEEEEccCccCC-CccccCCCCC--------CCCceEEEEEEECCCCCccccee
Confidence 588999999998622 1111111111 279999999976 3335999
Q ss_pred eecCCCCCeeceEEEEEecCCC-ceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEE
Q 001250 401 VISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1114)
Q Consensus 401 VI~nt~NPvWNE~F~f~va~~~-~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L 478 (1114)
|+.|++||+|||+|.|++..++ +.|+|+|+|+|. .+++|||+++|||++|..|. +.++|++++|.++.. .+|.+
T Consensus 518 v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~~-~~Ll~ 593 (598)
T PLN02230 518 IEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYSS-TRLLM 593 (598)
T ss_pred ccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCCC-CeeEE
Confidence 9999999999999999998885 999999999998 57999999999999999998 899999999998863 46666
Q ss_pred EEEE
Q 001250 479 SIQY 482 (1114)
Q Consensus 479 ~l~F 482 (1114)
+++|
T Consensus 594 ~f~~ 597 (598)
T PLN02230 594 RFEF 597 (598)
T ss_pred EEEe
Confidence 6655
No 14
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.94 E-value=2.1e-27 Score=281.90 Aligned_cols=177 Identities=25% Similarity=0.340 Sum_probs=151.4
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeece---------------
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG--------------- 347 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhG--------------- 347 (1114)
..+.+|+.||.++|+ +| |+|.|+|||||||+.+|+ +||||||+ |++++.++|++|
T Consensus 524 ~~~~~~v~~t~r~L~RvY---P~~~R~dSSNynPq~~W~----~G~QmVAlN~Qt~G~~l~L~~G~Fr~NGgCGYVlKP~ 596 (746)
T KOG0169|consen 524 EYGPDFVRHTQRNLLRVY---PKGLRVDSSNYNPQEFWN----HGCQMVALNFQTPGRMLDLNQGMFRANGGCGYVLKPD 596 (746)
T ss_pred HhhhHHHHHhHhheeeec---CCccccCCCCCChHHHHh----cCceEEEEecCCCChhhhhhhhhhccCCCccceECcH
Confidence 456789999999999 99 999999999999996666 99999999 999999999988
Q ss_pred --------------------EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCE----EEEeeeee-
Q 001250 348 --------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVI- 402 (1114)
Q Consensus 348 --------------------tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~----~v~RTrVI- 402 (1114)
+|+|+|++|++|... ....+++ ..+||||.|.|.|. ...+|+++
T Consensus 597 ~L~~~~~~F~P~~~~~~~~~tL~IkI~sGq~~~~~-~~~~~~~----------~~~dP~v~VeI~Gvp~D~~~~~Tk~v~ 665 (746)
T KOG0169|consen 597 FLLDSGSTFDPKSNLPPVKKTLKIKIISGQGWLPD-FGKTKFG----------EISDPDVYVEIAGVPADCAEQKTKVVK 665 (746)
T ss_pred HHcCCCCccCCCCCCCCCCceeEEEEEecCcccCC-CCCCccc----------ccCCCCEEEEEcccccchhhhhceeec
Confidence 699999999988743 2111111 13799999999873 33599955
Q ss_pred cCCCCCeeceEEEEEecCCC-ceEEEEEEEecCCC-CccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEE
Q 001250 403 SNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSI 480 (1114)
Q Consensus 403 ~nt~NPvWNE~F~f~va~~~-~~L~f~V~D~D~~g-ddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l 480 (1114)
.|++||.|+|+|+|++..++ +.|+|+|+|+|..+ |||+||++||+++|..|. +.++|++..|+.+.. .+|.+++
T Consensus 666 ~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~~~-asLfv~i 741 (746)
T KOG0169|consen 666 NNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEALSS-ASLFVRI 741 (746)
T ss_pred cCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce---eeeeecCCCCccccc-eeEEEEE
Confidence 55999999999999999886 99999999999976 999999999999999998 889999999998853 5888888
Q ss_pred EEec
Q 001250 481 QYTP 484 (1114)
Q Consensus 481 ~F~p 484 (1114)
++.+
T Consensus 742 ~~~~ 745 (746)
T KOG0169|consen 742 AIVE 745 (746)
T ss_pred EEec
Confidence 8764
No 15
>PLN02223 phosphoinositide phospholipase C
Probab=99.94 E-value=1.1e-26 Score=272.08 Aligned_cols=175 Identities=21% Similarity=0.367 Sum_probs=144.3
Q ss_pred CCCCccccCCCCcc-ccCcCCCCCcc-cCCCCCccccCCCCCCCCceeccC--CCCCcceeeece---------------
Q 001250 287 SPGGFYGYPNDSFS-SYPERAYLGMI-DSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG--------------- 347 (1114)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~-~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhG--------------- 347 (1114)
.+.+|+.||+++|+ +| |+|.|+ |||||+|+.+|+ +||||||+ |+.++.++|.+|
T Consensus 316 ~~~~~v~ft~~~l~RiY---PkG~R~~dSSNYnP~~~W~----~GcQmVALN~QT~d~~M~LN~G~F~~NG~CGYVLKP~ 388 (537)
T PLN02223 316 YERDIISFTQKKFLRTR---PKKKNLLINAPYKPQRAWM----HGAQLIALSRKDDKEKLWLMQGMFRANGGCGYVKKPD 388 (537)
T ss_pred cchhhhhhcccceEEEC---CCCCccccCCCCCChhhcc----cceeEeeeccCCCChhHHhhcchhccCCCCCceECCh
Confidence 34789999999999 99 999995 999999997777 99999999 999998887777
Q ss_pred ---------------------EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeee
Q 001250 348 ---------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVI 402 (1114)
Q Consensus 348 ---------------------tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI 402 (1114)
+|+|+|++|++|+ .|...+ .+.. ...||||+|.|.| ....||+|.
T Consensus 389 ~Lr~~~~~~~FdP~~~~~~~~~L~V~Visgq~~~-~~~~k~-~~~~--------s~~DpyV~VeI~Gvp~D~~~~kT~v~ 458 (537)
T PLN02223 389 FLLNAGPSGVFYPTENPVVVKILKVKIYMGDGWI-VDFKKR-IGRL--------SKPDLYVRISIAGVPHDEKIMKTTVK 458 (537)
T ss_pred hhccCCcccccCCCCCcccceEEEEEEEEccccc-CCcccc-cCCC--------CCCCeEEEEEEeeccCCcceeEEEeC
Confidence 4899999999986 222111 0111 1279999999976 233588888
Q ss_pred cCCCCCeeceEEEEEecCCC-ceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEE
Q 001250 403 SNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSI 480 (1114)
Q Consensus 403 ~nt~NPvWNE~F~f~va~~~-~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l 480 (1114)
.|++||+|||+|.|++..++ +.|+|+|+|+|. .+++|||+++|||+.|..|. ++++|++++|+++.. .+|.+++
T Consensus 459 nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~-~~Ll~~f 534 (537)
T PLN02223 459 NNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSS-TMLLTRF 534 (537)
T ss_pred CCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCC-ceEEEEE
Confidence 88999999999999998885 899999999998 56899999999999999998 899999999998863 4555544
Q ss_pred EE
Q 001250 481 QY 482 (1114)
Q Consensus 481 ~F 482 (1114)
+|
T Consensus 535 ~~ 536 (537)
T PLN02223 535 KW 536 (537)
T ss_pred Ee
Confidence 43
No 16
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.93 E-value=5e-26 Score=270.78 Aligned_cols=178 Identities=19% Similarity=0.291 Sum_probs=147.8
Q ss_pred CCCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeece--------------
Q 001250 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1114)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhG-------------- 347 (1114)
...+.+|+.||+++|+ +| |+|.|||||||+|+.+|+ .||||||+ |+.++.++|.+|
T Consensus 357 ~~~~~~~v~~n~~~L~RiY---P~G~RvdSSNynP~~~W~----~G~QmVALN~QT~d~~M~LN~G~F~~NG~cGYVLKP 429 (581)
T PLN02222 357 EKYAKQIVRFTQHNLLRIY---PKGTRVTSSNYNPLVGWS----HGAQMVAFNMQGYGRSLWLMQGMFRANGGCGYIKKP 429 (581)
T ss_pred HhhhHHHHHHhhhhceeeC---CCCCcCcCCCCCchhHhc----CCcEEeeccccCCChhhhhhcchhccCCCCceEECC
Confidence 4467789999999999 99 999999999999997777 99999999 999997777655
Q ss_pred -----------------------EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeee
Q 001250 348 -----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTF 400 (1114)
Q Consensus 348 -----------------------tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTr 400 (1114)
+|+|+|+.|.+|+-. .-..+++.+ ...||||+|.|.| ....||+
T Consensus 430 ~~lr~~~~~~~~fdp~~~~~~~~~L~V~Visgq~~~l~-~~~~~~~~~--------~~~dpyV~Vei~G~p~D~~~~rTk 500 (581)
T PLN02222 430 DLLLKSGSDSDIFDPKATLPVKTTLRVTIYMGEGWYFD-FRHTHFDQY--------SPPDFYTRVGIAGVPGDTVMKKTK 500 (581)
T ss_pred HHhccCCccccccCCCCCCCccceEEEEEEEcccccCC-CCccccCCC--------CCCCeeEEEEEeccCCCcceeeeE
Confidence 488999999987521 111111111 1379999999975 3335999
Q ss_pred eecCCCCCeeceEEEEEecCCC-ceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEE
Q 001250 401 VISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1114)
Q Consensus 401 VI~nt~NPvWNE~F~f~va~~~-~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L 478 (1114)
++.++.||+|||+|.|.+..++ +.|+|+|+|+|. .+++|||+++|||+.|..|. +.++|++.+|.++.. .+|.+
T Consensus 501 ~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~~-a~Lfv 576 (581)
T PLN02222 501 TLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYKS-VKLLV 576 (581)
T ss_pred ecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCCC-eeEEE
Confidence 9999999999999999988775 999999999998 56899999999999999998 899999999998864 57777
Q ss_pred EEEE
Q 001250 479 SIQY 482 (1114)
Q Consensus 479 ~l~F 482 (1114)
++.|
T Consensus 577 ~~~~ 580 (581)
T PLN02222 577 KVEF 580 (581)
T ss_pred EEEe
Confidence 7766
No 17
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.93 E-value=3.2e-25 Score=227.41 Aligned_cols=142 Identities=55% Similarity=0.891 Sum_probs=128.1
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCccccccccc---------------ccCCCCCCCcEEEEEECCEEEEeeeeecCCC
Q 001250 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNS---------------QMNTKITSDPYVTIAVAGAVVGRTFVISNSE 406 (1114)
Q Consensus 342 ~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k---------------~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~ 406 (1114)
..||||+|+|+|++|++|++||+.+.+++++|.+ .+...+++||||+|.+++.+++||++++++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~ 81 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSE 81 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCC
Confidence 4689999999999999999999876666666653 0124567999999999998888999999999
Q ss_pred CCeeceEEEEEecCCCceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEe
Q 001250 407 DPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1114)
Q Consensus 407 NPvWNE~F~f~va~~~~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~ 483 (1114)
||+|||+|.|+++++...|.|+|+|+|..++++||++.||++++..|...+.|++|.+..|++++.+++|+|+++|+
T Consensus 82 nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 82 NPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999999999998888999999999999999999999999999999889999999999999998889999999995
No 18
>PLN02952 phosphoinositide phospholipase C
Probab=99.92 E-value=1.7e-25 Score=267.17 Aligned_cols=178 Identities=19% Similarity=0.301 Sum_probs=144.7
Q ss_pred CCCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeece--------------
Q 001250 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1114)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhG-------------- 347 (1114)
...+.+|+.||+++|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.++.++|.+|
T Consensus 375 ~~~~~~~v~~n~~~l~RiY---P~g~R~dSsNy~P~~~W~----~G~QmVAlN~Qt~d~~m~lN~g~F~~NG~cGYVlKP 447 (599)
T PLN02952 375 TTNGQDVVRFTQRNILRIY---PKGTRITSSNYKPLIGWM----HGAQMIAFNMQGYGKSLWLMHGMFRANGGCGYLKKP 447 (599)
T ss_pred HhhHHHHHHHhhhhceeeC---CCCCcCcCCCCCchhHhc----CccEEeeecccCCChHHHhhhchhccCCCCCceECC
Confidence 4566789999999999 99 999999999999997777 99999999 988886665544
Q ss_pred -----------------------EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeee
Q 001250 348 -----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTF 400 (1114)
Q Consensus 348 -----------------------tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTr 400 (1114)
+|+|+|+.|.+|+. +....+.+.+. ..||||+|.+.| ....||+
T Consensus 448 ~~lr~~~~~~~~fdp~~~~~~~~~L~V~VisGq~l~l-p~~~~~~~~~~--------~~D~yV~V~i~G~p~D~~~~kTk 518 (599)
T PLN02952 448 DFLMKKGFHDEVFDPKKKLPVKKTLKVKVYLGDGWRL-DFSHTHFDSYS--------PPDFYTKMYIVGVPADNAKKKTK 518 (599)
T ss_pred HHHcccCCcccccCCCCCCCccceEEEEEEECcccCC-CCccccCCccC--------CCCceEEEEEeccCCCCcceeee
Confidence 58899999999863 22111111122 269999999976 2335999
Q ss_pred eecCCCCCeeceEEEEEecCCC-ceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEE
Q 001250 401 VISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1114)
Q Consensus 401 VI~nt~NPvWNE~F~f~va~~~-~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L 478 (1114)
++.++.||+|||+|.|++..+. +.|+|+|+|+|.. +++|||+++|||+.|..|. +|++|.+.+|++++ ...|.+
T Consensus 519 vi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l~-~a~Llv 594 (599)
T PLN02952 519 IIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKLK-NVRLLM 594 (599)
T ss_pred eccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCCC-CEEEEE
Confidence 9999999999999999988774 8899999999984 5899999999999999998 79999999999875 234444
Q ss_pred EEEE
Q 001250 479 SIQY 482 (1114)
Q Consensus 479 ~l~F 482 (1114)
+++|
T Consensus 595 ~f~~ 598 (599)
T PLN02952 595 RFIF 598 (599)
T ss_pred EEEe
Confidence 4443
No 19
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=99.92 E-value=1.2e-25 Score=198.37 Aligned_cols=73 Identities=53% Similarity=1.127 Sum_probs=71.1
Q ss_pred ccccCCCcchHHHHHHHHHHHhchhhhhhhcccccccccccCCcccCCCCCccCCCCCCCCCCCCCceecccc
Q 001250 1034 EDCFGQPETLECVRKVRSVGENNWQQFAADDQSEMRSHLIKYPVEVDRKGKVRPIPGYETFPDVGGNIVGSFF 1106 (1114)
Q Consensus 1034 ~~~f~~p~sle~v~~v~~~ae~n~~~~a~~~~~~~~GhLv~yP~~~~~~g~~~~lpg~~~fpd~~~~i~g~~~ 1106 (1114)
++.|.+|+|+|||++||++|++||++|+++++++|+||||+||+.|++||+|++|||+++||||+|+|+|+++
T Consensus 2 e~~F~~PesleCVr~Vn~iae~nW~~y~~ee~~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPDt~~~VlG~~S 74 (74)
T PF12357_consen 2 EECFLEPESLECVRRVNEIAEENWKQYASEEVTDLPGHLLKYPVQVDRDGKVTPLPGCEFFPDTGGKVLGSKS 74 (74)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhhccccccCCCccccCCeEEcCCCCEeeCCCCCcCCCCCCcccCCCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999873
No 20
>PLN02228 Phosphoinositide phospholipase C
Probab=99.91 E-value=8.8e-25 Score=259.63 Aligned_cols=181 Identities=21% Similarity=0.304 Sum_probs=149.6
Q ss_pred CCCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeece--------------
Q 001250 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG-------------- 347 (1114)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhG-------------- 347 (1114)
...+.+|+.||+++|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.+..++|.+|
T Consensus 339 ~~~~~~~v~hNkr~l~RvY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~QT~d~~M~lN~g~F~~NG~cGYVLKP 411 (567)
T PLN02228 339 RTRGTDLVRFTQRNLVRIY---PKGTRVDSSNYDPHVGWT----HGAQMVAFNMQGHGKQLWIMQGMFRANGGCGYVKKP 411 (567)
T ss_pred HhhHHHHHHHhhhhceeeC---CCCCcCCCCCCCchhHhc----CccEEeeecccCCChHHHhhcCchhhCCCCCceeCc
Confidence 3456789999999999 99 999999999999998877 99999999 999887766555
Q ss_pred --------------------EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCE----EEEeeeeec
Q 001250 348 --------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVIS 403 (1114)
Q Consensus 348 --------------------tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~----~v~RTrVI~ 403 (1114)
+|+|+|++|++|+. +....+.+.+ ...||||+|.+.|. ...||++++
T Consensus 412 ~~Lr~~~~~f~p~~~~p~~~~L~I~ViSGq~l~l-p~~~~~~~~~--------~~~DpyV~Vei~G~p~D~~~~rTk~~~ 482 (567)
T PLN02228 412 RILLDEHTLFDPCKRLPIKTTLKVKIYTGEGWDL-DFHLTHFDQY--------SPPDFFVKIGIAGVPRDTVSYRTETAV 482 (567)
T ss_pred hhhcccccccCCccCCCcCceEEEEEEECCccCC-CCCCCCCCCC--------CCCCcEEEEEEEecCCCCCcceeeccC
Confidence 48999999999842 1111100011 12799999999752 224999999
Q ss_pred CCCCCee-ceEEEEEecCCC-ceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEE
Q 001250 404 NSEDPVW-QQHFYVPVAHSA-AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSI 480 (1114)
Q Consensus 404 nt~NPvW-NE~F~f~va~~~-~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l 480 (1114)
++.||+| ||+|.|.+..++ +.|+|+|+|+|. .+++|||+++|||+.|..|. +.++|++.+|+.+. .++|.+++
T Consensus 483 n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~ 558 (567)
T PLN02228 483 DQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSF 558 (567)
T ss_pred CCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEE
Confidence 9999999 999999988775 899999999996 56899999999999999998 89999999999875 46888888
Q ss_pred EEecc
Q 001250 481 QYTPM 485 (1114)
Q Consensus 481 ~F~p~ 485 (1114)
.+.+.
T Consensus 559 ~~~~~ 563 (567)
T PLN02228 559 ALDPP 563 (567)
T ss_pred EEcCc
Confidence 88764
No 21
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.88 E-value=8.4e-23 Score=239.31 Aligned_cols=176 Identities=23% Similarity=0.382 Sum_probs=147.9
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeece---------------
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG--------------- 347 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhG--------------- 347 (1114)
..+.+|.-||++++| +| |+|+|+|||||+|++||+ +|+||||+ |++.+++.|-++
T Consensus 972 q~~~~lL~ynr~qlSRVY---PkGqRldSsNy~P~pmWn----~GsqmVALN~QTgDKpMQmNqa~F~~ngrcGYvLqPs 1044 (1267)
T KOG1264|consen 972 QKPVDLLKYNRKQLSRVY---PKGQRLDSSNYDPFPMWN----CGSQMVALNFQTGDKPMQMNQALFSLNGRCGYVLQPS 1044 (1267)
T ss_pred hccccccccccccceeec---CCCcccccCCCCCccccc----ccceeEEeeccCCCchhhhhHHHhhcCCceeeEecch
Confidence 577889999999999 99 999999999999999999 99999999 999998876655
Q ss_pred ---------------------EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC-----EEEEeeee
Q 001250 348 ---------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFV 401 (1114)
Q Consensus 348 ---------------------tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g-----~~v~RTrV 401 (1114)
+|.|+|+.|+.|+... + ...-|||.|.|.| .+.++|.|
T Consensus 1045 ~Mrte~fdP~n~e~~~~l~p~~lsv~vigaRHL~k~g---r-------------~i~cPfVevEiiGa~~Dt~~~~t~~V 1108 (1267)
T KOG1264|consen 1045 SMRTEKFDPMNPESQRGLLPMTLSVKVLGARHLPKLG---R-------------SIACPFVEVEIIGAEYDTNKFKTTVV 1108 (1267)
T ss_pred hcccccCCCCChHHhccccceEEEEEEeeccccccCC---C-------------CccCCcEEEEEeccccCCCceEEEEe
Confidence 6899999999998432 1 1256999999976 34456777
Q ss_pred ecCCCCCeec-eEEEEEecCCC-ceEEEEEEEecCCCC-ccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEE
Q 001250 402 ISNSEDPVWQ-QHFYVPVAHSA-AEVHFFVKDSDVVGS-ELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1114)
Q Consensus 402 I~nt~NPvWN-E~F~f~va~~~-~~L~f~V~D~D~~gd-dfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L 478 (1114)
+.|++||+|| |.|+|.+..|. +.|+|+|+|.|++++ .|||+++.||..|.+|. +.++|.+.-.+-+. .++|.|
T Consensus 1109 ~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlE-LaSLLv 1184 (1267)
T KOG1264|consen 1109 NDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLE-LASLLV 1184 (1267)
T ss_pred ccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhhh-hhhhee
Confidence 8889999999 99999999885 999999999999875 49999999999999997 78999766555432 357777
Q ss_pred EEEEeccccc
Q 001250 479 SIQYTPMERL 488 (1114)
Q Consensus 479 ~l~F~p~~~~ 488 (1114)
.++..|+...
T Consensus 1185 ~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1185 FIEMRPVLES 1194 (1267)
T ss_pred eeEeccccCc
Confidence 7777776543
No 22
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=7.1e-21 Score=187.18 Aligned_cols=118 Identities=22% Similarity=0.381 Sum_probs=104.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecC-CCCCeeceEEEEEecCCCce
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHSAAE 424 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~n-t~NPvWNE~F~f~va~~~~~ 424 (1114)
+|+|+|+|++|+++++.+ +++ +||||+|.++++++ ||+|+.+ +.||+|||+|.|.+++....
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~---------------sDPYv~i~lg~~~~-kT~v~~~~~~nP~WNe~F~f~v~~~~~~ 63 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTR---------------MDPYCRIRVGHAVY-ETPTAYNGAKNPRWNKTIQCTLPEGVDS 63 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCC---------------CCceEEEEECCEEE-EeEEccCCCCCCccCeEEEEEecCCCcE
Confidence 489999999999998877 554 99999999999887 9999977 79999999999999887788
Q ss_pred EEEEEEEecCCC-CccceEEEEeee-eeecCceeeeeeeeccCCCCCCCCCCeEEEEEEE
Q 001250 425 VHFFVKDSDVVG-SELIGTVAIPVE-QIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1114)
Q Consensus 425 L~f~V~D~D~~g-ddfIGqa~IpL~-eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F 482 (1114)
|.|+|+|+|.++ |++||++.|+|. .+..|...+.|++|...++++. .|+|+|+|+|
T Consensus 64 l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~--~g~i~l~l~y 121 (121)
T cd04016 64 IYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGEDK--EGMINLVFSY 121 (121)
T ss_pred EEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCCC--ceEEEEEEeC
Confidence 999999999965 789999999996 6888888999999988777653 4799999987
No 23
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.83 E-value=4.5e-20 Score=186.77 Aligned_cols=125 Identities=26% Similarity=0.401 Sum_probs=111.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCce
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAE 424 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~ 424 (1114)
+...|.|+|+||++|+.+ .||||+|.|++++++||+|+.++.||.|+|+|.|.+.++...
T Consensus 9 ~~~sL~v~V~EAk~Lp~~--------------------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~ 68 (146)
T cd04013 9 TENSLKLWIIEAKGLPPK--------------------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSV 68 (146)
T ss_pred EEEEEEEEEEEccCCCCc--------------------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccE
Confidence 345799999999999864 479999999999999999999999999999999999999899
Q ss_pred EEEEEEEe-cCC----CCccceEEEEeeeeeecCceeeeeeeeccCCCCC-------CCCCCeEEEEEEEecccccc
Q 001250 425 VHFFVKDS-DVV----GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP-------CKPGATLTLSIQYTPMERLS 489 (1114)
Q Consensus 425 L~f~V~D~-D~~----gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp-------~k~~g~L~L~l~F~p~~~~~ 489 (1114)
|.|.|++. +.. ++++||++.||+++|..|..+++||+|++.++++ ++.+++|||+++|.++...+
T Consensus 69 l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 69 ITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred EEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeCC
Confidence 99999644 333 6799999999999999999999999999999887 67788999999999987654
No 24
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=1.1e-19 Score=179.98 Aligned_cols=114 Identities=24% Similarity=0.308 Sum_probs=103.9
Q ss_pred EEEEEEEeeC---CCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceE
Q 001250 349 LDIWIYSAKN---LPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1114)
Q Consensus 349 L~VtI~eAk~---L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L 425 (1114)
|+|+|++|++ |+.+|..|. +||||+|.+++++. ||++++++.||+|||+|.|++.++...|
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~---------------sDPYv~i~~g~~~~-rTk~~~~~~nP~WnE~f~f~v~~~~~~l 65 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGS---------------TDAYCVAKYGPKWV-RTRTVEDSSNPRWNEQYTWPVYDPCTVL 65 (126)
T ss_pred eEEEEEEeECCccccccccCCC---------------CCeeEEEEECCEEe-EcCcccCCCCCcceeEEEEEecCCCCEE
Confidence 8999999999 888887765 99999999998876 9999999999999999999998888899
Q ss_pred EEEEEEecCC-------CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEE
Q 001250 426 HFFVKDSDVV-------GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTL 478 (1114)
Q Consensus 426 ~f~V~D~D~~-------gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L 478 (1114)
.|+|||+|.. ++++||++.|+|+++..+...+.||+|.+.++++.+..|+|++
T Consensus 66 ~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 66 TVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred EEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 9999999986 8999999999999999999999999999887777777788875
No 25
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=5.7e-19 Score=172.44 Aligned_cols=119 Identities=23% Similarity=0.363 Sum_probs=107.5
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEEEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f~ 428 (1114)
|+|+|++|++|+.+|..+. +||||+|.+.+..+.||+++.++.||+|||+|.|.+......|.|+
T Consensus 2 L~v~v~~a~~L~~~d~~g~---------------~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~ 66 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGT---------------SDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIK 66 (121)
T ss_pred eEEEEEEeeCCCCcCCCCC---------------CCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEE
Confidence 8999999999999987664 8999999999877789999999999999999999998777899999
Q ss_pred EEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEec
Q 001250 429 VKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1114)
Q Consensus 429 V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p 484 (1114)
|||+|.. ++++||++.|++.+|..+...+.|++|.++++. +..|+|+|.++|+|
T Consensus 67 v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~~~~~~ 121 (121)
T cd04042 67 VFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLVVTLTP 121 (121)
T ss_pred EEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEEEEECC
Confidence 9999996 789999999999999988889999999876653 34579999999986
No 26
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.80 E-value=3.7e-19 Score=175.11 Aligned_cols=117 Identities=21% Similarity=0.374 Sum_probs=101.6
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecC------CC
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH------SA 422 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~------~~ 422 (1114)
|+|+|++|++|+.+|..+. +||||+|.+++.+. ||++++++.||+|||+|.|.+.. ..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~---------------~dpYv~v~l~~~~~-kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~ 64 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGT---------------NDAYVIIQLGKEKY-STSVKEKTTSPVWKEECSFELPGLLSGNGNR 64 (126)
T ss_pred CEEEEEECcCCcCCCCCcC---------------CCceEEEEECCeee-eeeeecCCCCCEeCceEEEEecCcccCCCcC
Confidence 5899999999998887664 89999999988775 99999999999999999999876 35
Q ss_pred ceEEEEEEEecCCC-CccceEEEEeeeeee--cCceeeeeeeeccCCCCCCCCCCeEEEEEE
Q 001250 423 AEVHFFVKDSDVVG-SELIGTVAIPVEQIY--SGGKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1114)
Q Consensus 423 ~~L~f~V~D~D~~g-ddfIGqa~IpL~eL~--sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~ 481 (1114)
..|.|+|+|++..+ +++||++.|+++++. .+...+.||+|.+..++..+..|+|+|+||
T Consensus 65 ~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 65 ATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 78999999999864 899999999999988 677788999998766655555689999875
No 27
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.77 E-value=6.5e-18 Score=166.87 Aligned_cols=120 Identities=19% Similarity=0.330 Sum_probs=101.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCC-ceE
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-AEV 425 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~-~~L 425 (1114)
..|+|+|++|++|+..+ ++||||+|.+++..++||++. ++.||+|||+|.|.+..+. ..+
T Consensus 4 ~~L~V~Vi~A~~L~~~~------------------~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l 64 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH------------------VPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSF 64 (126)
T ss_pred eEEEEEEEEeeCCCCCC------------------CCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEE
Confidence 46999999999998642 289999999998877899985 5899999999999975543 678
Q ss_pred EEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEecc
Q 001250 426 HFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1114)
Q Consensus 426 ~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~ 485 (1114)
+|.|+|++.. ++++||++.|||.++..|...+.||+|...++++.+..|+|+|+|+|.+.
T Consensus 65 ~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 65 TISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred EEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 9999999874 68999999999999999988999999987654334456899999999863
No 28
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.76 E-value=4.5e-18 Score=173.33 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=105.6
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecC-CCCCeeceEEEEEecCC-CceEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHS-AAEVH 426 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~n-t~NPvWNE~F~f~va~~-~~~L~ 426 (1114)
|+|+|++|++|+.+|.++. +||||+|.++++.. ||+++.+ +.||+|||+|.|.+.++ ...|.
T Consensus 2 L~V~Vi~A~~L~~~d~~g~---------------sDPYV~v~l~~~~~-kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~ 65 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRV---------------PEVFVKAQLGNQVL-RTRPSQTRNGNPSWNEELMFVAAEPFEDHLI 65 (150)
T ss_pred EEEEEEEeECCCCCCCCCC---------------CCeEEEEEECCEEe-eeEeccCCCCCCcccCcEEEEecCccCCeEE
Confidence 8999999999999998765 89999999999664 9999977 69999999999999876 46899
Q ss_pred EEEEEecCC-CCccceEEEEeeeeeecC----ceeeeeeeeccCCC-----CCCCCCCeEEEEEEEeccc
Q 001250 427 FFVKDSDVV-GSELIGTVAIPVEQIYSG----GKVEGTYPVLNGSG-----KPCKPGATLTLSIQYTPME 486 (1114)
Q Consensus 427 f~V~D~D~~-gddfIGqa~IpL~eL~sG----~~id~W~pLl~~~G-----kp~k~~g~L~L~l~F~p~~ 486 (1114)
|+|+|++.. ++++||++.|+|+++..+ ...++||+|.+..| ++.+..|+|+|+++|....
T Consensus 66 v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~ 135 (150)
T cd04019 66 LSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGY 135 (150)
T ss_pred EEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcc
Confidence 999999974 689999999999999753 45689999987765 5566778999999999653
No 29
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.75 E-value=4.6e-18 Score=164.94 Aligned_cols=116 Identities=22% Similarity=0.432 Sum_probs=100.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecC-CCCCeeceEEEEEecCC-Cce
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHS-AAE 424 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~n-t~NPvWNE~F~f~va~~-~~~ 424 (1114)
|+|+|+|++|++|++.|..+. +||||+|.+++.+ +||+++.+ +.||+|||+|.|.+... ...
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~-~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~ 64 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDK---------------QDPYCVLRIGGVT-KKTKTDFRGGQHPEWDEELRFEITEDKKPI 64 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCC---------------CCceEEEEECCCc-cccccccCCCCCCccCceEEEEecCCCCCE
Confidence 789999999999999987665 8999999999855 59998865 79999999999999875 478
Q ss_pred EEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEE
Q 001250 425 VHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1114)
Q Consensus 425 L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F 482 (1114)
|.|+|||++..++++||++.|++.++..+...+.|++|.. +++ ..|+|+|+|+|
T Consensus 65 l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~~---~~G~i~l~l~f 118 (118)
T cd08681 65 LKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KGR---YAGEVYLELTF 118 (118)
T ss_pred EEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CCc---EeeEEEEEEEC
Confidence 9999999998889999999999999987767789999964 443 34799999987
No 30
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=9.7e-18 Score=164.68 Aligned_cols=119 Identities=26% Similarity=0.356 Sum_probs=100.9
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEEEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f~ 428 (1114)
|.|+|++|++|+.++...+ .+||||.|.+.++.++||++++++.||+|||+|.|.+.+....|.|.
T Consensus 2 l~v~v~~a~~L~~~~~~~g--------------~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~ 67 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNK--------------MRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFY 67 (121)
T ss_pred eEEEEEEccCCCCCCCCCC--------------CcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEE
Confidence 7899999999998753211 38999999998887789999999999999999999998777899999
Q ss_pred EEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEE
Q 001250 429 VKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1114)
Q Consensus 429 V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F 482 (1114)
|||+|.. ++++||++.|+++++..+...+.||+|...... -+..|+|||+++|
T Consensus 68 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~~G~i~l~~~~ 121 (121)
T cd08401 68 IYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDAD-SEVQGKVHLELRL 121 (121)
T ss_pred EEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccCCC-CcccEEEEEEEEC
Confidence 9999985 689999999999999988888999999743221 1235799999875
No 31
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.74 E-value=1.2e-17 Score=164.60 Aligned_cols=120 Identities=20% Similarity=0.295 Sum_probs=101.9
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCC----c
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA----A 423 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~----~ 423 (1114)
+|.|+|++|++|+..|..+. +||||+|.+.+++. ||++++++.||+|||+|.|.+.++. .
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~---------------~dpyv~v~~~~~~~-rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~ 64 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGS---------------SSAYVELDFDGQKK-RTRTKPKDLNPVWNEKLVFNVSDPSRLSNL 64 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCC---------------cCcEEEEEECCEEe-cceeEcCCCCCccceEEEEEccCHHHccCC
Confidence 48999999999998887654 89999999999875 9999999999999999999997653 5
Q ss_pred eEEEEEEEecCC--CCccceEEEEeeeeee-cCceeeeeeeeccCCCCCCCCCCeEEEEEEEec
Q 001250 424 EVHFFVKDSDVV--GSELIGTVAIPVEQIY-SGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1114)
Q Consensus 424 ~L~f~V~D~D~~--gddfIGqa~IpL~eL~-sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p 484 (1114)
.|.|+|||++.. +++|||++.|+++++. .+.....||+|..+ ++.-+..|+|+|+++|+.
T Consensus 65 ~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 65 VLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRVRGEIGLKVYITD 127 (127)
T ss_pred eEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCccEEEEEEEEEcC
Confidence 799999999885 6899999999999998 56777899999754 322234579999999874
No 32
>PRK05443 polyphosphate kinase; Provisional
Probab=99.74 E-value=1.1e-16 Score=196.24 Aligned_cols=266 Identities=14% Similarity=0.119 Sum_probs=189.5
Q ss_pred hhHHHHHHHHHhccc-----ceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccc
Q 001250 545 KCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMD 619 (1114)
Q Consensus 545 ~~f~al~~AI~~Ak~-----~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~ 619 (1114)
..|.-+.+.|++|.+ .|.|+-|.+. ...++.++|.++|++||+|+||| +...- +
T Consensus 348 ~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~------------~~s~iv~aL~~Aa~~Gk~V~vlv-e~kar---f----- 406 (691)
T PRK05443 348 ESFDPVVEFLRQAAADPDVLAIKQTLYRTS------------KDSPIVDALIEAAENGKQVTVLV-ELKAR---F----- 406 (691)
T ss_pred cCchHHHHHHHHhccCCCeeEEEEEEEEec------------CCHHHHHHHHHHHHcCCEEEEEE-ccCcc---c-----
Confidence 478999999999998 8999988542 23789999999999999999996 43220 0
Q ss_pred cccccCcHHHHHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCC
Q 001250 620 GVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDN 699 (1114)
Q Consensus 620 gvm~t~d~~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt 699 (1114)
.......+.+.++.+||+|..-.. .+..|.|+++||.+.. ++-+.++++|+.|+....
T Consensus 407 --de~~n~~~~~~L~~aGv~V~y~~~----------------~~k~HaK~~lid~~e~-~~~~~~~~iGTgN~n~~s--- 464 (691)
T PRK05443 407 --DEEANIRWARRLEEAGVHVVYGVV----------------GLKTHAKLALVVRREG-GGLRRYVHLGTGNYNPKT--- 464 (691)
T ss_pred --cHHHHHHHHHHHHHcCCEEEEccC----------------CccceeEEEEEEeecC-CceeEEEEEcCCCCCcch---
Confidence 000123455667889999975211 2469999999998422 233459999999987731
Q ss_pred CCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEE-eCHHHHHHHHHHHHHHHHhcCCCCccccCCCchhhhhh
Q 001250 700 PHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKI-DGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRI 778 (1114)
Q Consensus 700 ~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rV-eGPAA~Dl~~~F~qRWn~a~~~~~~~~L~~~~~~ll~~ 778 (1114)
...|.|+.+.+ ++..+.|+...|..-|.......
T Consensus 465 ------------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~--------------- 499 (691)
T PRK05443 465 ------------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK--------------- 499 (691)
T ss_pred ------------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCcccc---------------
Confidence 13578999994 55689999999998875321100
Q ss_pred ccCCCccCCCCCCCCcCCCCCCceEEEEeecCCcccCCCCCCchhhcccccccCccccchHHHHHHHHHHHHhccc----
Q 001250 779 ERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH---- 854 (1114)
Q Consensus 779 ~~~p~~~~~~~~p~~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~~~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~---- 854 (1114)
+ -.++-+ |. .....|.+++..+|.+||+
T Consensus 500 ----------------------~-~~l~~s-P~------------------------~~~~~l~~~i~~ei~~Ak~G~~a 531 (691)
T PRK05443 500 ----------------------L-RKLLVS-PF------------------------TLRERLLELIDREIANARAGKPA 531 (691)
T ss_pred ----------------------c-cEEeec-Cc------------------------cHHHHHHHHHHHHHHHHhcCCCC
Confidence 0 000000 00 0246799999999999999
Q ss_pred EEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEe----------cCCCCCCCCchhhHHHHH
Q 001250 855 FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVI----------PMWPEGVPTGAATQRILF 924 (1114)
Q Consensus 855 fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVl----------P~~Peg~p~~~avq~il~ 924 (1114)
.|+|.+.|| ++. +|..+|..|. ..||+|.|++ |..+|..
T Consensus 532 ~I~ik~n~l-~d~-----------------~ii~aL~~As--~~GV~V~liVRGiC~l~pgipg~sd~i----------- 580 (691)
T PRK05443 532 RIIAKMNSL-VDP-----------------QIIDALYEAS--QAGVKIDLIVRGICCLRPGVPGLSENI----------- 580 (691)
T ss_pred EEEEEcCCC-CCH-----------------HHHHHHHHHH--HCCCeEEEEEecccccCCCCCCCCCCE-----------
Confidence 999999995 443 7999999986 4577788887 5555542
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCceEEeccCCCceeCCCCCCCCcCCCCCCCCcceEEEEEcCc
Q 001250 925 WQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus 925 wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEIav~i~dp~ 1004 (1114)
.+ .+++.+|++. +++++... . |+ .++.|||||++.|||. ++.|+++.++|+.
T Consensus 581 ----~v----~s~v~r~Leh-~rIy~f~~----------g------d~-~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~ 632 (691)
T PRK05443 581 ----RV----RSIVGRFLEH-SRIYYFGN----------G------GD-EEVYISSADWMPRNLD--RRVEVLFPILDPR 632 (691)
T ss_pred ----EE----HHHHHHHHhc-CEEEEEeC----------C------CC-cEEEEECCCCCccccc--ceEEEeEEEeCHH
Confidence 11 4788888884 56653211 1 45 6889999999999998 9999999999986
Q ss_pred c
Q 001250 1005 Y 1005 (1114)
Q Consensus 1005 ~ 1005 (1114)
.
T Consensus 633 ~ 633 (691)
T PRK05443 633 L 633 (691)
T ss_pred H
Confidence 3
No 33
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.72 E-value=5.7e-17 Score=157.15 Aligned_cols=118 Identities=25% Similarity=0.387 Sum_probs=102.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEE
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~ 426 (1114)
|+|+|+|++|++|+.+|..+. +||||+|.+.+.. +||++++++.||+|||+|.|++.+....|.
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~---------------~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~ 64 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGK---------------SDPFCVLELVNAR-LQTHTIYKTLNPEWNKIFTFPIKDIHDVLE 64 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCC---------------CCcEEEEEECCEe-eecceecCCcCCccCcEEEEEecCcCCEEE
Confidence 789999999999999887664 8999999998876 499999999999999999999987778999
Q ss_pred EEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEe
Q 001250 427 FFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1114)
Q Consensus 427 f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~ 483 (1114)
|+|+|++. .++++||++.+++.++..|. ..|++|.++.++.. ..|+|.|+|+|.
T Consensus 65 ~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~-~~G~i~l~~~~~ 119 (119)
T cd08377 65 VTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTR-AKGSILLEMDVI 119 (119)
T ss_pred EEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCCCc-eeeEEEEEEEeC
Confidence 99999998 56899999999999998764 58999987654432 357999999873
No 34
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.72 E-value=3.1e-17 Score=161.16 Aligned_cols=113 Identities=21% Similarity=0.379 Sum_probs=97.9
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC-CceEEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~-~~~L~f 427 (1114)
|.|+|++|++|+.+ . +||||+|.+.+.+ +||++++++.||+|||+|.|.+.+. ...|.|
T Consensus 2 L~V~Vi~a~~L~~~----~---------------~Dpyv~v~l~~~~-~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~ 61 (121)
T cd08378 2 LYVRVVKARGLPAN----S---------------NDPVVEVKLGNYK-GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEV 61 (121)
T ss_pred EEEEEEEecCCCcc----c---------------CCCEEEEEECCcc-ccccccCCCCCCccceEEEEEcCCCcCCEEEE
Confidence 89999999999865 2 8999999998865 5999999999999999999999875 578999
Q ss_pred EEEEecCCCCccceEEEEeeeeeecC-----ceeeeeeeeccCCCCCCCCCCeEEEEEEEe
Q 001250 428 FVKDSDVVGSELIGTVAIPVEQIYSG-----GKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1114)
Q Consensus 428 ~V~D~D~~gddfIGqa~IpL~eL~sG-----~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~ 483 (1114)
+|||+|..++++||++.|+++++..+ ...++||+|.+.++. +..|+|+|+++|-
T Consensus 62 ~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~--~~~G~i~l~~~~~ 120 (121)
T cd08378 62 SVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGG--RVGGELMLAVWFG 120 (121)
T ss_pred EEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCC--ccceEEEEEEEec
Confidence 99999988999999999999998753 235699999877653 3458999999984
No 35
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.72 E-value=5.5e-17 Score=159.86 Aligned_cols=122 Identities=16% Similarity=0.307 Sum_probs=102.8
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC-EEEEeeeeecCCCCCeeceEEEEEecCCCceEEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-AVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g-~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f 427 (1114)
|.|+|++|++|+. ..+. +||||++.+++ ....||++++++.||+|||+|.|.+......|.|
T Consensus 1 l~v~v~~A~~L~~--~~g~---------------~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~ 63 (126)
T cd08678 1 LLVKNIKANGLSE--AAGS---------------SNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLF 63 (126)
T ss_pred CEEEEEEecCCCC--CCCC---------------cCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEE
Confidence 6899999999986 4443 89999999975 2336999999999999999999999766678999
Q ss_pred EEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEecccc
Q 001250 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 487 (1114)
Q Consensus 428 ~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~~ 487 (1114)
+|||++.. ++++||++.|++.+|..+...+.|++|....++..+..|+|++.++|.+.++
T Consensus 64 ~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 64 EVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 99999985 4899999999999999887778999997664433345689999999988664
No 36
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.72 E-value=1.8e-16 Score=193.37 Aligned_cols=265 Identities=13% Similarity=0.114 Sum_probs=185.0
Q ss_pred hhHHHHHHHHHhccc-----ceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccc
Q 001250 545 KCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMD 619 (1114)
Q Consensus 545 ~~f~al~~AI~~Ak~-----~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~ 619 (1114)
..|+.+.+.|++|.+ +|.|+-|.+. .+.++.+.|.++|++||+|++|| +-... ++
T Consensus 339 ~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~------------~~s~ii~aL~~Aa~~Gk~V~v~v-eLkAr---fd---- 398 (672)
T TIGR03705 339 ESFDPVVEFLRQAAEDPDVLAIKQTLYRTS------------KDSPIIDALIEAAENGKEVTVVV-ELKAR---FD---- 398 (672)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEEEEec------------CCcHHHHHHHHHHHcCCEEEEEE-Eehhh---cc----
Confidence 478999999999998 8999988642 13689999999999999999997 41110 00
Q ss_pred cccccCcHHHHHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCC
Q 001250 620 GVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDN 699 (1114)
Q Consensus 620 gvm~t~d~~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt 699 (1114)
....-.+.+.|+.+|++|..-- ..+..|.|+++||.+. +++-+..+++|--|.+..
T Consensus 399 ---e~~ni~wa~~le~aG~~viyg~----------------~~~k~H~K~~li~r~~-~~~~~~y~~igTgN~n~~---- 454 (672)
T TIGR03705 399 ---EEANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRRE-GGELRRYVHLGTGNYHPK---- 454 (672)
T ss_pred ---chhhHHHHHHHHHcCCEEEEcC----------------CCeeeeeEEEEEEEee-CCceEEEEEecCCCCCCc----
Confidence 0112345667889999998620 1368999999999742 122223556654444331
Q ss_pred CCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEE-EeCHHHHHHHHHHHHHHHHhcCCCCccccCCCchhhhhh
Q 001250 700 PHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSK-IDGPAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRI 778 (1114)
Q Consensus 700 ~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~r-VeGPAA~Dl~~~F~qRWn~a~~~~~~~~L~~~~~~ll~~ 778 (1114)
-...|.|+++. .++..+.|+...|..-|....... +. .
T Consensus 455 -----------------------------ta~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~-------~~-~---- 493 (672)
T TIGR03705 455 -----------------------------TARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK-------FK-H---- 493 (672)
T ss_pred -----------------------------ccccccceeEEEeChHHHHHHHHHHHHhhCCCcchh-------hH-H----
Confidence 12468999999 889999999999998775321100 00 0
Q ss_pred ccCCCccCCCCCCCCcCCCCCCceEEEEeecCCcccCCCCCCchhhcccccccCccccchHHHHHHHHHHHHhccc----
Q 001250 779 ERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH---- 854 (1114)
Q Consensus 779 ~~~p~~~~~~~~p~~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~~~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~---- 854 (1114)
+-+.|. .....+.+++.++|..||+
T Consensus 494 ---------------------------l~~~P~------------------------~~~~~~~~~i~~ei~~Ak~g~~~ 522 (672)
T TIGR03705 494 ---------------------------LLVSPF------------------------TLRKRLLELIDREIENARAGKPA 522 (672)
T ss_pred ---------------------------HHhCcc------------------------hHHHHHHHHHHHHHHHHHcCCCC
Confidence 000010 0245788999999999999
Q ss_pred EEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEe----------cCCCCCCCCchhhHHHHH
Q 001250 855 FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVI----------PMWPEGVPTGAATQRILF 924 (1114)
Q Consensus 855 fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVl----------P~~Peg~p~~~avq~il~ 924 (1114)
+|+|.+.||. +. +|..+|..|. ..||+|.+++ |..+|..
T Consensus 523 ~I~ik~n~l~-D~-----------------~ii~aL~~As--~aGV~V~LivRGiCcL~pgipg~sd~i----------- 571 (672)
T TIGR03705 523 RIIAKMNSLV-DP-----------------DLIDALYEAS--QAGVKIDLIVRGICCLRPGVPGLSENI----------- 571 (672)
T ss_pred EEEEEcCCCC-CH-----------------HHHHHHHHHH--HCCCeEEEEEecccccCCCCCCCCCCE-----------
Confidence 9999999954 53 7999999985 4577788777 5555442
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCceEEeccCCCceeCCCCCCCCcCCCCCCCCcceEEEEEcCc
Q 001250 925 WQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus 925 wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEIav~i~dp~ 1004 (1114)
.+ .+++.++++ |+++++... . |+ .++.||||||+.|||. ++.|+++.++|+.
T Consensus 572 ----~v----~siv~r~Le-h~rIy~f~~----------~------~d-~~~~igSAn~m~Rnl~--~r~E~~~~i~d~~ 623 (672)
T TIGR03705 572 ----RV----RSIVGRFLE-HSRIYYFGN----------G------GE-EKVYISSADWMTRNLD--RRVEVLFPIEDPT 623 (672)
T ss_pred ----EE----EEEhhHhhC-cCEEEEEeC----------C------CC-cEEEEECCCCCCCccc--ceEEEEEEEcCHH
Confidence 11 367778888 677753210 1 34 5789999999999998 9999999999985
No 37
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=5.4e-17 Score=158.08 Aligned_cols=121 Identities=28% Similarity=0.459 Sum_probs=101.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC-EEEEeeeeecCCCCCeeceEEEEEecCCCceE
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-AVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g-~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L 425 (1114)
|.|+|+|++|++|+..+..++ .+||||+|.+.+ ...+||++++++.||+|||+|.|.+......|
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~--------------~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l 67 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGG--------------TVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPL 67 (124)
T ss_pred eEEEEEEEcccCCCcccccCC--------------CCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEE
Confidence 789999999999997664332 389999999998 56679999999999999999999998667899
Q ss_pred EEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEec
Q 001250 426 HFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1114)
Q Consensus 426 ~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p 484 (1114)
.|+|||++.. ++++||++.+++.++..+...+.|...+..++++. |+|+++++|.|
T Consensus 68 ~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~---G~i~~~l~~~p 124 (124)
T cd04044 68 NLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPV---GELNYDLRFFP 124 (124)
T ss_pred EEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCccc---eEEEEEEEeCC
Confidence 9999999985 68999999999999997766654444334666643 79999999986
No 38
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.71 E-value=6e-17 Score=157.10 Aligned_cols=120 Identities=23% Similarity=0.378 Sum_probs=99.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC-CceE
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~-~~~L 425 (1114)
|.|+|+|++|++|+.+|..... .....+||||+|.+++.. +||++++++.||+|||+|.|.+... ...|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~---------~~~g~~dPyv~v~~~~~~-~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l 70 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGG---------LVKGKSDPYVIVRVGAQT-FKSKVIKENLNPKWNEVYEAVVDEVPGQEL 70 (121)
T ss_pred CeEEEEEEEccCCccccccccc---------CCCCCcCCEEEEEECCEe-EEccccCCCCCCcccceEEEEeCCCCCCEE
Confidence 6799999999999988753100 001138999999999854 6999999999999999999999754 5799
Q ss_pred EEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEE
Q 001250 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1114)
Q Consensus 426 ~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F 482 (1114)
.|+|+|++..++++||++.|++.++..+...+.||+|.+. ..|+|+|+++|
T Consensus 71 ~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 71 EIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred EEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 9999999988899999999999999987778999999643 23689998875
No 39
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.71 E-value=1e-16 Score=159.14 Aligned_cols=126 Identities=21% Similarity=0.379 Sum_probs=102.7
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCcc-cccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCC
Q 001250 344 LLHGNLDIWIYSAKNLPNMDMFHKT-LGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1114)
Q Consensus 344 LlhGtL~VtI~eAk~L~~~D~~g~~-~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~ 422 (1114)
++.|+|+|+|++|++|...|..+.. +++. ....+||||+|.++++++++|++++++.||+|||+|.|.+. ..
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~------~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~ 73 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKK------GSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NG 73 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhccccc------CccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CC
Confidence 4679999999999999988763210 0000 01248999999999988889999999999999999999997 55
Q ss_pred ceEEEEEEEecCC-CCccceEEEEeeeeeec--CceeeeeeeeccCCCCCCCCCCeEEEEEEEec
Q 001250 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYS--GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1114)
Q Consensus 423 ~~L~f~V~D~D~~-gddfIGqa~IpL~eL~s--G~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p 484 (1114)
+.|.|+|+|++.. .+++||++.|+|+++.. +...+.|++|. +.|+|+|+++|..
T Consensus 74 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 74 RNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred CEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 7899999998875 57899999999999997 56779999995 2368999998864
No 40
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.70 E-value=9.6e-17 Score=156.37 Aligned_cols=113 Identities=27% Similarity=0.400 Sum_probs=96.8
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC--EEEEeeeeecCCCCCeeceEEEEEecCC-CceE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~~v~RTrVI~nt~NPvWNE~F~f~va~~-~~~L 425 (1114)
|.|+|++|++|+..|..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.+... ...|
T Consensus 2 L~V~vi~a~~L~~~~~~~~---------------~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l 66 (119)
T cd04036 2 LTVRVLRATNITKGDLLST---------------PDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVL 66 (119)
T ss_pred eEEEEEEeeCCCccCCCCC---------------CCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEE
Confidence 7999999999998887654 89999999964 3446999999999999999999998765 4579
Q ss_pred EEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEE
Q 001250 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1114)
Q Consensus 426 ~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F 482 (1114)
.|+|||+|..++++||++.+++++|..|...+.|++|.. ++ .|+|+|.+.+
T Consensus 67 ~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~-~~-----~g~l~~~~~~ 117 (119)
T cd04036 67 ELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNP-QG-----KEELEVEFLL 117 (119)
T ss_pred EEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCC-CC-----CceEEEEEEe
Confidence 999999998889999999999999999999999999963 22 2577777654
No 41
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.70 E-value=1.2e-16 Score=156.60 Aligned_cols=120 Identities=23% Similarity=0.399 Sum_probs=100.2
Q ss_pred eEEEEEEEEeeCCCCCCC--CCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC-Cc
Q 001250 347 GNLDIWIYSAKNLPNMDM--FHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AA 423 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~--~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~-~~ 423 (1114)
|.|+|+|++|++|+..|. .+. +||||+|.+++.+ .||++++++.||+|||+|.|++... ..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~---------------~dPyv~v~~~~~~-~kT~~~~~t~~P~Wne~f~~~~~~~~~~ 64 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGK---------------SDPYAILSVGAQR-FKTQTIPNTLNPKWNYWCEFPIFSAQNQ 64 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCC---------------cCCeEEEEECCEE-EecceecCCcCCccCCcEEEEecCCCCC
Confidence 789999999999998887 554 8999999998776 4999999999999999999999873 68
Q ss_pred eEEEEEEEecCC-CCccceEEEEeeeeee---cCceeeeeeeeccCCC-CCCCCCCeEEEEEEE
Q 001250 424 EVHFFVKDSDVV-GSELIGTVAIPVEQIY---SGGKVEGTYPVLNGSG-KPCKPGATLTLSIQY 482 (1114)
Q Consensus 424 ~L~f~V~D~D~~-gddfIGqa~IpL~eL~---sG~~id~W~pLl~~~G-kp~k~~g~L~L~l~F 482 (1114)
.|.|+|||++.. ++++||++.|++.++. .....+.||+|.+... +.....|+|+|++.+
T Consensus 65 ~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 65 LLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred EEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 999999999985 6899999999999987 2344679999986532 222345799988864
No 42
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.69 E-value=2.7e-16 Score=152.12 Aligned_cols=112 Identities=25% Similarity=0.340 Sum_probs=99.3
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC-CceEEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~-~~~L~f 427 (1114)
|+|+|++|++|+.+|..+. +||||+|.+.+.+ +||++++++.||+|||+|.|.+... ...|.|
T Consensus 2 ~~V~v~~a~~L~~~~~~~~---------------~dPyv~v~~~~~~-~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v 65 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGL---------------SDPYVKFRLGNEK-YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65 (116)
T ss_pred EEEEEEEEECCCCCCCCCC---------------CCcEEEEEECCEe-EecccccCCCCCceeEEEEEEecCCCCCEEEE
Confidence 7999999999999887654 8999999998876 5999999999999999999999776 589999
Q ss_pred EEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEe
Q 001250 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1114)
Q Consensus 428 ~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~ 483 (1114)
+|||++.. .+++||++.+++.++..+...+.|++|.+. +|+|++.+.|+
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 66 EVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred EEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 99999985 689999999999999988889999999632 36889888875
No 43
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.69 E-value=2.6e-16 Score=154.18 Aligned_cols=117 Identities=26% Similarity=0.440 Sum_probs=99.2
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEEEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f~ 428 (1114)
|.|+|++|++|+.+|..+. +||||+|.+++..++||++++++.||+|||.|.|.+.+....|.|+
T Consensus 2 l~v~vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~ 66 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGS---------------SDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFY 66 (121)
T ss_pred EEEEEEEeeCCcCCCCCCC---------------CCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEE
Confidence 8999999999999997765 8999999999988889999999999999999999998777899999
Q ss_pred EEEecCC-CCccceEEEEeeeeeecC-ceeeeeeeeccCCCCCCCCCCeEEEEEE
Q 001250 429 VKDSDVV-GSELIGTVAIPVEQIYSG-GKVEGTYPVLNGSGKPCKPGATLTLSIQ 481 (1114)
Q Consensus 429 V~D~D~~-gddfIGqa~IpL~eL~sG-~~id~W~pLl~~~Gkp~k~~g~L~L~l~ 481 (1114)
|||++.. .+++||++.++++++..+ ...+.|++|...++.. +..|+|+|.++
T Consensus 67 v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 67 VLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred EEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 9999986 589999999999988754 3478999996532221 12468888765
No 44
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.68 E-value=2e-17 Score=196.74 Aligned_cols=162 Identities=25% Similarity=0.306 Sum_probs=131.7
Q ss_pred CCCCCCcCCCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeece-------
Q 001250 278 LTPQGSTLSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG------- 347 (1114)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhG------- 347 (1114)
.|+-+....++-+|+-||.+++| || |+|.|||||||.|+.||+ +|||||++ |+....+.|-.|
T Consensus 600 ~~~~~~Lk~~~iefV~yNK~QlSRIY---PKgtRvdSSNymPqifWn----aGcQmVsLNfQT~dlaMQlN~g~FEyNG~ 672 (1189)
T KOG1265|consen 600 STGLGYLKKSPIEFVNYNKRQLSRIY---PKGTRVDSSNYMPQIFWN----AGCQMVSLNFQTPDLAMQLNMGMFEYNGG 672 (1189)
T ss_pred HHHHHHHHhCchHHhhhhhHhhhccc---cCcccccccccchHHHHh----ccceEEEeeccCccHHHHhhhhheeecCC
Confidence 34445557788999999999999 99 999999999999998887 99999999 888886655444
Q ss_pred -------------------------------EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC---
Q 001250 348 -------------------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--- 393 (1114)
Q Consensus 348 -------------------------------tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--- 393 (1114)
+|.|+|++|.=|..++ ..-||.|.+-|
T Consensus 673 sGYllKPdfmRrpDr~fdPFse~~VdgvIA~t~sV~VISgqFLSdrk-------------------vgtyVEVdmfgLP~ 733 (1189)
T KOG1265|consen 673 SGYLLKPDFMRRPDRQFDPFSESPVDGVIAATLSVTVISGQFLSDRK-------------------VGTYVEVDMFGLPT 733 (1189)
T ss_pred ccceeChHHhhCCCcCcCCcccCcccceEEeeEEEEEEeeeeccccc-------------------cCceEEEEecCCCc
Confidence 7999999998887553 34599999865
Q ss_pred ---EEEEeeeeecC-CCCCeece-EEEEE-ecCC-CceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCC
Q 001250 394 ---AVVGRTFVISN-SEDPVWQQ-HFYVP-VAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGS 466 (1114)
Q Consensus 394 ---~~v~RTrVI~n-t~NPvWNE-~F~f~-va~~-~~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~ 466 (1114)
.+..||+++.+ +.||+|+| -|.|. |--+ .+.|+|.|++ -+..|||+-.+||..|..|. +.+.|.+..
T Consensus 734 Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye---EggK~ig~RIlpvd~l~~GY---rhv~LRse~ 807 (1189)
T KOG1265|consen 734 DTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE---EGGKFIGQRILPVDGLNAGY---RHVCLRSES 807 (1189)
T ss_pred hhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec---cCCceeeeeccchhcccCcc---eeEEecCCC
Confidence 12248888776 89999996 58886 3333 5899999998 46789999999999999998 788888777
Q ss_pred CCCCC
Q 001250 467 GKPCK 471 (1114)
Q Consensus 467 Gkp~k 471 (1114)
+.++.
T Consensus 808 Nqpl~ 812 (1189)
T KOG1265|consen 808 NQPLT 812 (1189)
T ss_pred CCccc
Confidence 77653
No 45
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=2.3e-16 Score=156.16 Aligned_cols=120 Identities=23% Similarity=0.407 Sum_probs=99.9
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCE------EEEeeeeecCCCCCeeceEEEEEecCC
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA------VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~------~v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
+|+|+|++|++|+.+|..+. +||||+|.+.+. ..+||++++++.||+|||+|.|.+...
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~---------------~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~ 65 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGA---------------SDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR 65 (133)
T ss_pred CEEEEEEEeECCCcccCCCC---------------cCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC
Confidence 48999999999999887664 899999999764 235999999999999999999999776
Q ss_pred CceEEEEEEEecCC-CCccceEEEEeeeeeecCce------eeeeeeeccCCCCCCCCCCeEEEEEEEe
Q 001250 422 AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGK------VEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1114)
Q Consensus 422 ~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~------id~W~pLl~~~Gkp~k~~g~L~L~l~F~ 483 (1114)
...|.|+|+|+|.. ++++||++.|++.++..+.. .+.||+|....++. +..|+|+|+|.|.
T Consensus 66 ~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~~ 133 (133)
T cd04033 66 EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAYL 133 (133)
T ss_pred CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEeeC
Confidence 77899999999986 58999999999999986532 46999997543222 3457999999984
No 46
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.68 E-value=3.2e-16 Score=153.43 Aligned_cols=117 Identities=22% Similarity=0.353 Sum_probs=98.1
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC-CceEEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~-~~~L~f 427 (1114)
|+|+|++|++|+.+|..+. +||||+|.+++.. .+|++++++.||+|||+|.|.+... ...|.|
T Consensus 2 L~v~vi~a~~L~~~d~~~~---------------~DPyv~v~~~~~~-~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~ 65 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGT---------------SDPFVRVFYNGQT-LETSVVKKSCYPRWNEVFEFELMEGADSPLSV 65 (123)
T ss_pred EEEEEEEeeCCCCCCCCCC---------------cCceEEEEECCEE-EeceeecCCCCCccCcEEEEEcCCCCCCEEEE
Confidence 8999999999999887654 8999999998876 4999999999999999999999876 478999
Q ss_pred EEEEecCCC-CccceEEEEeeeeeecCceeeeeeeeccCCCC---CCCCCCeEEEEEE
Q 001250 428 FVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK---PCKPGATLTLSIQ 481 (1114)
Q Consensus 428 ~V~D~D~~g-ddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gk---p~k~~g~L~L~l~ 481 (1114)
+|||++..+ +++||++.+++.++..+...+.||.|.....+ .-+..|.|+|.|+
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 66 EVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred EEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 999999854 79999999999999877777899999854322 2234578887763
No 47
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.68 E-value=1.9e-16 Score=155.63 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=86.0
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC------EEEEeeeeecCCCCCeeceEEEEEecCC
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g------~~v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
+|+|+|++|++|+.+|. |. +||||+|++.+ ++..||+++++++||+|||+|.|.+...
T Consensus 1 kL~V~Vi~A~~L~~~d~-g~---------------~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~ 64 (120)
T cd08395 1 KVTVKVVAANDLKWQTT-GM---------------FRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNE 64 (120)
T ss_pred CEEEEEEECcCCCcccC-CC---------------CCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCc
Confidence 48999999999998774 43 89999999842 2335899999999999999999998743
Q ss_pred ----CceEEEEEEEecCCC-CccceEEEEeeeeeecCceeeeeeeec
Q 001250 422 ----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 422 ----~~~L~f~V~D~D~~g-ddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
...|.|+|+|+|..+ +++||++.||+.++..+...+.|++|.
T Consensus 65 ~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 65 DDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred CCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 267999999999864 889999999999999888889999995
No 48
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=4.8e-16 Score=153.16 Aligned_cols=117 Identities=33% Similarity=0.593 Sum_probs=102.2
Q ss_pred EEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC---CceEEEEE
Q 001250 353 IYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFV 429 (1114)
Q Consensus 353 I~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~---~~~L~f~V 429 (1114)
|++|++|+. .++. +||||+|.+.+.+ +||++++++.||+|||+|.|++.+. ...|.|+|
T Consensus 2 vi~a~~L~~--~~g~---------------~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v 63 (127)
T cd08373 2 VVSLKNLPG--LKGK---------------GDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVV 63 (127)
T ss_pred eEEeeCCcc--cCCC---------------CCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEE
Confidence 789999987 4443 8999999998876 4999999999999999999999764 57899999
Q ss_pred EEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEecccccc
Q 001250 430 KDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLS 489 (1114)
Q Consensus 430 ~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~~~~ 489 (1114)
||++.. ++++||++.++++++..+...+.|++|.+.++++. +++|+++++|.|.+.+.
T Consensus 64 ~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~--~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 64 KDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGRPT--GATISLEVSYQPPDGAV 122 (127)
T ss_pred EECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCCCCCcc--cEEEEEEEEEeCCCCcc
Confidence 999985 57999999999999998888899999998877764 36999999999987653
No 49
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.67 E-value=1.1e-15 Score=150.98 Aligned_cols=121 Identities=18% Similarity=0.253 Sum_probs=101.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceE
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L 425 (1114)
++.|+|+|++|++|...|.++. +||||+|.+++... ||++++++.||+|||+|.|.+......|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~---------------~dPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~~~~~~~~l 65 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGG---------------ADPYVIIKCEGESV-RSPVQKDTLSPEFDTQAIFYRKKPRSPI 65 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCC---------------cCccEEEEECCEEE-EeCccCCCCCCcccceEEEEecCCCCEE
Confidence 4679999999999998887664 89999999999875 9999999999999999999998888899
Q ss_pred EEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCCCC-CCCCCCeEEEEEEEec
Q 001250 426 HFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK-PCKPGATLTLSIQYTP 484 (1114)
Q Consensus 426 ~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gk-p~k~~g~L~L~l~F~p 484 (1114)
.|+|||++..++++||++.+++.++..+ ...|++|.....+ .-+..|.|.|++++.+
T Consensus 66 ~i~V~d~~~~~d~~lG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 66 KIQVWNSNLLCDEFLGQATLSADPNDSQ--TLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEEEEECCCCCCCceEEEEEecccCCCc--CceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 9999999998999999999999886533 3578888632211 1233579999988765
No 50
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.66 E-value=1.7e-16 Score=161.49 Aligned_cols=97 Identities=25% Similarity=0.471 Sum_probs=89.8
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCC
Q 001250 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1114)
Q Consensus 343 ~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~ 422 (1114)
.++.|.|+|+|+.|.+|...|+.++ +||||.+.+++++. ||+++++++||+|||+|+|.+.++.
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~s---------------SDPyVVl~lg~q~l-kT~~v~~n~NPeWNe~ltf~v~d~~ 65 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGS---------------SDPYVVLELGNQKL-KTRVVYKNLNPEWNEELTFTVKDPN 65 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccC---------------CCCeEEEEECCeee-eeeeecCCCCCcccceEEEEecCCC
Confidence 3578999999999999999998654 99999999999997 9999999999999999999999999
Q ss_pred ceEEEEEEEecC-CCCccceEEEEeeeeeecCce
Q 001250 423 AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGK 455 (1114)
Q Consensus 423 ~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~ 455 (1114)
..|.++|+|+|. ..|||||.|.|++..+.++..
T Consensus 66 ~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 66 TPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQK 99 (168)
T ss_pred ceEEEEEEeCCCCCcccccceeeeccHHHHHHhh
Confidence 999999999999 569999999999999997654
No 51
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.66 E-value=4.5e-16 Score=148.60 Aligned_cols=98 Identities=26% Similarity=0.509 Sum_probs=87.2
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC-CceEEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~-~~~L~f 427 (1114)
|.|+|++|++|+..+..+. +||||+|.++++. .||++++++.||+|||+|.|.+.++ ...|.|
T Consensus 2 L~V~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~-~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v 65 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKE---------------PSPYVELTVGKTT-QKSKVKERTNNPVWEEGFTFLVRNPENQELEI 65 (105)
T ss_pred EEEEEeeecCCCCcccCCC---------------CCcEEEEEECCEE-EeCccccCCCCCcccceEEEEeCCCCCCEEEE
Confidence 8999999999998876553 8999999999965 5999999999999999999999886 578999
Q ss_pred EEEEecCCCCccceEEEEeeeeeecC--ceeeeeeeecc
Q 001250 428 FVKDSDVVGSELIGTVAIPVEQIYSG--GKVEGTYPVLN 464 (1114)
Q Consensus 428 ~V~D~D~~gddfIGqa~IpL~eL~sG--~~id~W~pLl~ 464 (1114)
+|+|++. +++||++.|+|.+|..+ ...+.||+|.+
T Consensus 66 ~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 66 EVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEECCC--CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 9999987 88999999999999854 46889999963
No 52
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.66 E-value=3.6e-16 Score=153.81 Aligned_cols=102 Identities=25% Similarity=0.396 Sum_probs=88.1
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEe-c
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPV-A 419 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~v-a 419 (1114)
..|+|.|+|++|++|+.+| .+. +||||+|.+.. ...+||++++++.||+|||+|.|.+ .
T Consensus 11 ~~~~L~V~Vi~A~~L~~~~-~~~---------------~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~ 74 (122)
T cd08381 11 KNGTLFVMVMHAKNLPLLD-GSD---------------PDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLP 74 (122)
T ss_pred eCCEEEEEEEEeeCCCCCC-CCC---------------CCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCC
Confidence 3688999999999999998 554 89999999963 2345999999999999999999987 3
Q ss_pred C---CCceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeee
Q 001250 420 H---SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1114)
Q Consensus 420 ~---~~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pL 462 (1114)
. ....|.|+|||+|.. ++++||++.|+|+++..+...+.||+|
T Consensus 75 ~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 75 VEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred hHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 2 247899999999985 589999999999999988778899987
No 53
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.65 E-value=1.2e-15 Score=153.00 Aligned_cols=114 Identities=21% Similarity=0.358 Sum_probs=96.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC-CceE
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~-~~~L 425 (1114)
|.|+|+|++|++|+.+|..+. +||||+|.+++.. .||++++++.||+|||+|.|.+.+. ...|
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~---------------~DPYv~v~~~~~~-~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l 78 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGK---------------SDPYCEVSMGSQE-HKTKVVSDTLNPKWNSSMQFFVKDLEQDVL 78 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCC---------------cCcEEEEEECCEe-eeccccCCCCCCccCceEEEEecCccCCEE
Confidence 889999999999999987664 8999999998776 5999999999999999999999765 4789
Q ss_pred EEEEEEecCC-CCccceEEEEeeeeeec-----CceeeeeeeeccCCCCCCCCCCeEEEEEEE
Q 001250 426 HFFVKDSDVV-GSELIGTVAIPVEQIYS-----GGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1114)
Q Consensus 426 ~f~V~D~D~~-gddfIGqa~IpL~eL~s-----G~~id~W~pLl~~~Gkp~k~~g~L~L~l~F 482 (1114)
.|+|||+|.. ++++||++.|++.++.. ...+..|.+|. ++ ..|+|+|+|.|
T Consensus 79 ~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~~---~~g~i~l~~~~ 135 (136)
T cd08375 79 CITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH---EV---PTGEVVVKLDL 135 (136)
T ss_pred EEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc---cc---cceeEEEEEEe
Confidence 9999999985 48999999999999985 23445677763 22 23699999887
No 54
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.65 E-value=4.1e-16 Score=150.24 Aligned_cols=101 Identities=25% Similarity=0.474 Sum_probs=87.7
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCee-ceEEEEEecCC---Cce
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVW-QQHFYVPVAHS---AAE 424 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvW-NE~F~f~va~~---~~~ 424 (1114)
|+|+|++|++|+.+|...+ .+||||+|.+++.+ +||++++++.||+| ||+|.|.+.+. ...
T Consensus 1 l~V~v~~a~~L~~~d~~~~--------------~~Dpyv~v~~~~~~-~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~ 65 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSD--------------LTDAFVEVKFGSTT-YKTDVVKKSLNPVWNSEWFRFEVDDEELQDEP 65 (110)
T ss_pred CEEEEEEEECCCccccCCC--------------CCCceEEEEECCee-EecceecCCCCCcccCcEEEEEcChHHcCCCe
Confidence 6899999999998884222 38999999998854 59999999999999 99999999764 368
Q ss_pred EEEEEEEecCC-CCccceEEEEeeeeeec---Cceeeeeeeecc
Q 001250 425 VHFFVKDSDVV-GSELIGTVAIPVEQIYS---GGKVEGTYPVLN 464 (1114)
Q Consensus 425 L~f~V~D~D~~-gddfIGqa~IpL~eL~s---G~~id~W~pLl~ 464 (1114)
|.|+|||+|.. ++++||++.+++.+|.. +..+++||+|++
T Consensus 66 l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 66 LQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred EEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999985 57899999999999986 456899999986
No 55
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.65 E-value=3.5e-16 Score=153.37 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=88.1
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
-+|.|.|+|++|++|+.+| .+. +||||+|.+.. ...+||++++++.||+|||+|.|.+.+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~---------------~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~ 73 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGT---------------CNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNE 73 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCC---------------CCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcCh
Confidence 4678999999999999888 443 89999999963 334599999999999999999999875
Q ss_pred C--CceEEEEEEEecCC--CCccceEEEEeeeeeecCceeeeeeee
Q 001250 421 S--AAEVHFFVKDSDVV--GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1114)
Q Consensus 421 ~--~~~L~f~V~D~D~~--gddfIGqa~IpL~eL~sG~~id~W~pL 462 (1114)
. ...|.|+|||++.. ++++||++.|++.++..|..+++||.|
T Consensus 74 ~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 74 RDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred HHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 4 35788999999874 378999999999999988888999986
No 56
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.64 E-value=8.1e-16 Score=150.80 Aligned_cols=103 Identities=19% Similarity=0.331 Sum_probs=90.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEE--CCEEEEeeeeecCCCCCeeceEEEEEecCC--
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L--~g~~v~RTrVI~nt~NPvWNE~F~f~va~~-- 421 (1114)
.|.|.|+|++|++|+.+|..+. +||||+|.+ .+..++||++++++.||+|||+|.|.+...
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l 79 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGT---------------ADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQEL 79 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCC---------------CCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHh
Confidence 4689999999999999887664 899999999 445567999999999999999999998754
Q ss_pred -CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeec
Q 001250 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 422 -~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
...|.|+|||+|.. ++++||++.|+++++..+...+.|++|.
T Consensus 80 ~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 80 PKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 36899999999985 5899999999999999777889999985
No 57
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.63 E-value=2.3e-15 Score=148.03 Aligned_cols=116 Identities=20% Similarity=0.308 Sum_probs=93.2
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEEEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f~ 428 (1114)
|+|+|++|++|+.+|.++. +||||+|.+++..++||++++++.||+|||+|.|++.. ...|.|+
T Consensus 2 l~v~v~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~ 65 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRL---------------PDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQ 65 (123)
T ss_pred eEEEEEEecCCCccCCCCC---------------CCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEE
Confidence 8999999999998887664 89999999986666799999999999999999999975 6799999
Q ss_pred EEEecCCC---CccceEEEEeeeeeecCc-eeeeeeeeccCCCCC-CCCCCeEEEEE
Q 001250 429 VKDSDVVG---SELIGTVAIPVEQIYSGG-KVEGTYPVLNGSGKP-CKPGATLTLSI 480 (1114)
Q Consensus 429 V~D~D~~g---ddfIGqa~IpL~eL~sG~-~id~W~pLl~~~Gkp-~k~~g~L~L~l 480 (1114)
|||++..+ ++|||++.|++.+|.... ....|++|....... ....|+|.+++
T Consensus 66 V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 66 VFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999864 579999999999987432 235799996544321 11235666554
No 58
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=1.9e-15 Score=148.21 Aligned_cols=104 Identities=36% Similarity=0.618 Sum_probs=94.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEE
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~ 426 (1114)
|.|+|+|++|++|+..|..+. +||||+|.+.+...++|++++++.||+|||+|.|++.+....|.
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~ 65 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGK---------------IDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKIT 65 (120)
T ss_pred CeEEEEEEeeECCCCccCCCC---------------cCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEE
Confidence 689999999999999887654 89999999998777899999999999999999999988878999
Q ss_pred EEEEEecCCC-CccceEEEEeeeeeecCceeeeeeeeccCC
Q 001250 427 FFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGS 466 (1114)
Q Consensus 427 f~V~D~D~~g-ddfIGqa~IpL~eL~sG~~id~W~pLl~~~ 466 (1114)
|+|+|++..+ +++||++.+++.++..+ ..++||.|++.+
T Consensus 66 v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 66 LEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred EEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999864 77999999999999976 568999998765
No 59
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.62 E-value=1.9e-15 Score=147.95 Aligned_cols=103 Identities=30% Similarity=0.354 Sum_probs=90.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC--EEEEeeeeecCCCCCeeceEEEEEecCC--
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~~v~RTrVI~nt~NPvWNE~F~f~va~~-- 421 (1114)
.|+|.|+|++|++|+.+|..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.+...
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~---------------~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 79 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGT---------------SDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSEL 79 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCC---------------CCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHh
Confidence 4789999999999998887654 89999999853 3456999999999999999999998653
Q ss_pred -CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeec
Q 001250 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 422 -~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
...|.|+|||+|.. ++++||++.|+++++..|...+.|++|.
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 36899999999985 5789999999999998888889999984
No 60
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.62 E-value=1.7e-15 Score=154.15 Aligned_cols=104 Identities=20% Similarity=0.338 Sum_probs=86.1
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCE----EEEeeeeecCCCCCeeceEEEEEec----
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVISNSEDPVWQQHFYVPVA---- 419 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~----~v~RTrVI~nt~NPvWNE~F~f~va---- 419 (1114)
.|.|+|++|++|+. ..|. +||||+|.+.+. ...||+|+++++||+|||+|.|.+.
T Consensus 1 kL~V~Vi~ArnL~~--~~g~---------------sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~ 63 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGT---------------CDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSS 63 (148)
T ss_pred CEEEEEEeCcCCCC--CCCC---------------CCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccc
Confidence 38999999999986 3333 899999999762 2349999999999999999999984
Q ss_pred -----------CC-CceEEEEEEEecCC-CCccceEEEEeeeeeecC-ceeeeeeeeccCCCC
Q 001250 420 -----------HS-AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG-GKVEGTYPVLNGSGK 468 (1114)
Q Consensus 420 -----------~~-~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG-~~id~W~pLl~~~Gk 468 (1114)
+. ...|.|+|||++.. +++|||++.|++.+|..+ ...+.||+|..++.+
T Consensus 64 ~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~ 126 (148)
T cd04010 64 PEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEK 126 (148)
T ss_pred cccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccc
Confidence 11 25799999999974 689999999999999976 567899999866544
No 61
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.62 E-value=1.8e-15 Score=153.53 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=90.4
Q ss_pred eeceEEEEEEEEeeCCCCCC-CCCcccccccccccCCCCCCCcEEEEEECC--E--EEEeeeeecCCCCCeeceEEEEEe
Q 001250 344 LLHGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPV 418 (1114)
Q Consensus 344 LlhGtL~VtI~eAk~L~~~D-~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~--~v~RTrVI~nt~NPvWNE~F~f~v 418 (1114)
...|.|.|+|++|++|+.+| ..+. +||||+|++.. . ...||+++++++||+|||+|.|.+
T Consensus 26 y~~~~L~V~Vi~ArnL~~~~~~~g~---------------sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v 90 (146)
T cd04028 26 DKKGQLEVEVIRARGLVQKPGSKVL---------------PAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDV 90 (146)
T ss_pred eCCCEEEEEEEEeeCCCcccCCCCC---------------cCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEE
Confidence 34689999999999998775 3343 89999999943 2 245999999999999999999999
Q ss_pred cCCCceEEEEEE-EecC-CCCccceEEEEeeeeeecCceeeeeeeeccCC
Q 001250 419 AHSAAEVHFFVK-DSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGS 466 (1114)
Q Consensus 419 a~~~~~L~f~V~-D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~ 466 (1114)
......|.|+|| |++. .+++|||++.|+|+++..+.....||+|.+..
T Consensus 91 ~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 91 SPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS 140 (146)
T ss_pred cCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence 855689999999 5665 45889999999999998777788999998543
No 62
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.62 E-value=1.6e-15 Score=146.32 Aligned_cols=99 Identities=27% Similarity=0.402 Sum_probs=85.4
Q ss_pred eEEEEEEEEeeCCCCCCCC-CcccccccccccCCCCCCCcEEEEEECC--EEEEeeeeecCCCCCeeceEEEEEecCC--
Q 001250 347 GNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~-g~~~~~~~~k~~~~~itsDPYV~V~L~g--~~v~RTrVI~nt~NPvWNE~F~f~va~~-- 421 (1114)
|+|+|+|++|++|+.+|.. +. +||||+|.+.+ +..+||++++++.||+|||+|.|.+...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~---------------~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~ 65 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGS---------------SDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEV 65 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCC---------------CCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhc
Confidence 7899999999999998876 54 89999999953 4457999999999999999999988653
Q ss_pred --CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeec
Q 001250 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 422 --~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
...|.|+|||+|.. ++++||++.|++.+|... .+|+++.
T Consensus 66 ~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 66 KAGERLSCRLWDSDRFTADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred cCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhcC---CCCCccc
Confidence 46899999999985 589999999999999843 3899884
No 63
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.62 E-value=2.6e-15 Score=148.40 Aligned_cols=104 Identities=22% Similarity=0.362 Sum_probs=88.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecCC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
.|+|.|+|++|++|+..|...+ .+||||+|.+.. ....||++++++.||+|||+|.|.+...
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~~~--------------~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEAKK--------------RSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred CCeEEEEEEEecCCCccCCCCC--------------CCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 4689999999999998775322 389999999942 2235999999999999999999998653
Q ss_pred ---CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeec
Q 001250 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 422 ---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
...|.|+|||+|.. ++++||++.|++.++......+.|++|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 46799999999984 5889999999999999888889999983
No 64
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.62 E-value=1.5e-15 Score=148.88 Aligned_cols=113 Identities=26% Similarity=0.434 Sum_probs=96.0
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecC-CCCCeeceEEEEEecCC-----
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHS----- 421 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~n-t~NPvWNE~F~f~va~~----- 421 (1114)
+|+|+|++|++|+..+..+. +||||+|.+.+...++|+++.+ +.||+|||+|.|.+...
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~---------------~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~ 65 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGK---------------MKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQG 65 (125)
T ss_pred CEEEEEEEcccCCCCCcccC---------------CceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccC
Confidence 58999999999998886654 8999999999844459999864 89999999999999877
Q ss_pred CceEEEEEEEecC-CCCccceEEEEeeeeeecCce-----eeeeeeeccCCCCCCCCCCeEEE
Q 001250 422 AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGK-----VEGTYPVLNGSGKPCKPGATLTL 478 (1114)
Q Consensus 422 ~~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~-----id~W~pLl~~~Gkp~k~~g~L~L 478 (1114)
...|.|+|+|++. .++++||++.|++.++..+.. ...||+|..++|++. |.|+|
T Consensus 66 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~---G~~~~ 125 (125)
T cd04051 66 RLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQ---GVLNF 125 (125)
T ss_pred ccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcC---eEEeC
Confidence 5889999999988 568999999999999997654 368999998888754 57764
No 65
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.61 E-value=4.1e-15 Score=146.96 Aligned_cols=114 Identities=25% Similarity=0.397 Sum_probs=95.1
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEEE
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f 427 (1114)
.|+|+|++|++|+..|..+. +||||+|.+++.. ++|++++++.||+|||+|.|.+..+...|.|
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~---------------~DPyv~v~~~~~~-~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i 65 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGT---------------SDPYVTVQVGKTK-KRTKTIPQNLNPVWNEKFHFECHNSSDRIKV 65 (127)
T ss_pred eEEEEEEECcCCcCCCCCCC---------------cCcEEEEEECCEe-eecceecCCCCCccceEEEEEecCCCCEEEE
Confidence 58999999999999987664 8999999998765 5999999999999999999999877778999
Q ss_pred EEEEecC------------CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEE
Q 001250 428 FVKDSDV------------VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSI 480 (1114)
Q Consensus 428 ~V~D~D~------------~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l 480 (1114)
+|||+|. ..+++||++.|++.++.. ..+.|++|...+++. +..|+|+|+|
T Consensus 66 ~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 66 RVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred EEEECCCCcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCC-cEeEEEEEEC
Confidence 9999985 258899999999998853 346999998655432 2356887764
No 66
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.61 E-value=3.4e-15 Score=147.58 Aligned_cols=97 Identities=21% Similarity=0.275 Sum_probs=85.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEE
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~ 426 (1114)
|.|.|+|++|++|+.++. .||||+|.+++.+. +|+++++ .||+|||+|.|.+......|.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~------------------~dPYV~Ik~g~~k~-kT~v~~~-~nP~WnE~F~F~~~~~~~~L~ 61 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDK------------------FNTYVTLKVQNVKS-TTIAVRG-SQPCWEQDFMFEINRLDLGLV 61 (127)
T ss_pred ceEEEEEEEeeCCCCCCC------------------CCCeEEEEECCEEe-EeeECCC-CCCceeeEEEEEEcCCCCEEE
Confidence 579999999999975541 68999999998774 9999987 599999999999988877799
Q ss_pred EEEEEecCCCCccceEEEEeeeeeecCcee--eeeeeec
Q 001250 427 FFVKDSDVVGSELIGTVAIPVEQIYSGGKV--EGTYPVL 463 (1114)
Q Consensus 427 f~V~D~D~~gddfIGqa~IpL~eL~sG~~i--d~W~pLl 463 (1114)
|+|||+|.++|||||++.|+|.++..+... ..||+|.
T Consensus 62 v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 62 IELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred EEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 999999999999999999999999976544 6899996
No 67
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.61 E-value=1.9e-15 Score=154.33 Aligned_cols=114 Identities=27% Similarity=0.406 Sum_probs=87.7
Q ss_pred EEEEEEEEeeCCCCCCCCCccccccccc-ccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC--Cce
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNS-QMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--AAE 424 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k-~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~--~~~ 424 (1114)
+|.|+|++|++|+.+|..+. .+++.+ .......+||||+|.++++++ ||++++++.||+|||+|.|++..+ ...
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~--~~~~~~~~~~~~~~~DPYV~V~~~g~~~-kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIM--ANVKKAFLGEKKELVDPYVEVSFAGQKV-KTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhh--ccceeccccCCCCCcCcEEEEEECCEee-ecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 38999999999999985431 001110 112233589999999999886 999999999999999999997543 578
Q ss_pred EEEEEEEecCC-CCccceEEEEeeeeeecCce-------eeeeeeecc
Q 001250 425 VHFFVKDSDVV-GSELIGTVAIPVEQIYSGGK-------VEGTYPVLN 464 (1114)
Q Consensus 425 L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~-------id~W~pLl~ 464 (1114)
|.|+|+|+|.. ++++||++.|++.+|..... -..|+.|.+
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 99999999985 79999999999999885431 135666654
No 68
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.61 E-value=2.3e-15 Score=148.56 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=87.2
Q ss_pred eEEEEEEEEeeCCCCCCCC-CcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecCC
Q 001250 347 GNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~-g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
+.|.|+|++|++|+.+|.. +. +||||+|.+.. ...+||+|++++.||+|||+|.|.+...
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g~---------------~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQR---------------SDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCCC---------------CCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 5799999999999998864 43 89999999942 2235999999999999999999998643
Q ss_pred ---CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeec
Q 001250 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 422 ---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
...|.|+|||+|.. ++++||++.|+|.++..+.....||+|.
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 36899999999984 5889999999999998777778999984
No 69
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.60 E-value=2.8e-15 Score=146.68 Aligned_cols=99 Identities=11% Similarity=0.177 Sum_probs=83.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC---EEEEeeeeecCCCCCeeceEEEEEecCC-
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG---AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g---~~v~RTrVI~nt~NPvWNE~F~f~va~~- 421 (1114)
.|.|.|+|++|++|+ + .+. +||||+|+|.. ....+|+|+++++||+|||+|.|.+...
T Consensus 13 ~~~L~V~vikA~~L~-~--~g~---------------sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~ 74 (118)
T cd08677 13 KAELHVNILEAENIS-V--DAG---------------CECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEE 74 (118)
T ss_pred CCEEEEEEEEecCCC-C--CCC---------------CCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHH
Confidence 478999999999998 3 232 89999999953 2345999999999999999999998754
Q ss_pred --CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeee
Q 001250 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1114)
Q Consensus 422 --~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pL 462 (1114)
...|.|+|+|+|.+ ++++||++.+++.++..+...+.|.+|
T Consensus 75 l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 75 SLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred hCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 37899999999995 599999999999998666666788764
No 70
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.60 E-value=3.9e-15 Score=146.08 Aligned_cols=102 Identities=24% Similarity=0.349 Sum_probs=88.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecCC-
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~~- 421 (1114)
+.|+|+|++|++|+.+|..+. +||||+|.+.. ...+||++++++.||+|||+|.|.+...
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDI---------------PDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CEEEEEEEEEECCCCccCCCC---------------CCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 679999999999999987654 89999999953 3446999999999999999999998643
Q ss_pred --CceEEEEEEEecCC---CCccceEEEEeeeeeecCceeeeeeeec
Q 001250 422 --AAEVHFFVKDSDVV---GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 422 --~~~L~f~V~D~D~~---gddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
...|.|+|||.+.. .+++||++.|++.+|..+...++||+|.
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 36899999999873 6899999999999998888889999983
No 71
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.59 E-value=1.2e-14 Score=142.52 Aligned_cols=114 Identities=23% Similarity=0.250 Sum_probs=95.4
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC--EEEEeeeeecCCCCCeeceEEEEEecCC-Cce
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS-AAE 424 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~~v~RTrVI~nt~NPvWNE~F~f~va~~-~~~ 424 (1114)
.|+|+|++|++|+.++..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.+... ...
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~---------------~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~ 66 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGL---------------SDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLW 66 (126)
T ss_pred EEEEEEEEeECCCCCCCCCC---------------CCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCE
Confidence 48999999999999887654 89999999865 4567999999999999999999999875 578
Q ss_pred EEEEEEEecCC-CCccceEEEEeeeeeec---CceeeeeeeeccCCCCCCCCCCeEEEEEEEec
Q 001250 425 VHFFVKDSDVV-GSELIGTVAIPVEQIYS---GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1114)
Q Consensus 425 L~f~V~D~D~~-gddfIGqa~IpL~eL~s---G~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p 484 (1114)
|.|+|||++.. .+++||++.++|+++.. |...+.|++|. + .|+|++.+.+.-
T Consensus 67 L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-~-------~g~i~l~~~~~~ 122 (126)
T cd04043 67 ISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-T-------QGRLLLRVSMEG 122 (126)
T ss_pred EEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC-C-------CCeEEEEEEEee
Confidence 99999999986 58899999999987653 44678999995 2 257888877654
No 72
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.59 E-value=1.7e-14 Score=143.98 Aligned_cols=118 Identities=21% Similarity=0.322 Sum_probs=95.7
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC------
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS------ 421 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~------ 421 (1114)
.|+|+|++|++|+.+|..+. +||||+|.+.+.+ +||++++++.||+|||+|.|.+...
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~-~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~ 65 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGL---------------SDPFARVSFLNQS-QETEVIKETLSPTWDQTLIFDEVELYGSPEE 65 (135)
T ss_pred EEEEEEEEeecCcCCCCCCC---------------CCCEEEEEECCee-eEeeeEcCCCCCccCcEEEEeeeeccCChHH
Confidence 38999999999999987765 8999999998776 4999999999999999999975321
Q ss_pred ----CceEEEEEEEecCC-CCccceEEEE-eeeeeec---CceeeeeeeeccCCCCCCCCCCeEEEEEEEecc
Q 001250 422 ----AAEVHFFVKDSDVV-GSELIGTVAI-PVEQIYS---GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1114)
Q Consensus 422 ----~~~L~f~V~D~D~~-gddfIGqa~I-pL~eL~s---G~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~ 485 (1114)
...|.|+|||+|.. .+++||++.+ |+..+.. +.....|++|. +.++ ..|+|.|.+.+.++
T Consensus 66 ~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~~~~---~~Geil~~~~~~~~ 134 (135)
T cd04017 66 IAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-KGGQ---SAGELLAAFELIEV 134 (135)
T ss_pred hhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEee-cCCC---chhheeEEeEEEEe
Confidence 25799999999985 4789999997 6555553 35677999996 3443 23699999998875
No 73
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.59 E-value=1.7e-14 Score=139.29 Aligned_cols=112 Identities=23% Similarity=0.418 Sum_probs=89.3
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC---CceE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAEV 425 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~---~~~L 425 (1114)
|+|+|++|++|+.. +. +||||.|.+.+...+||+++++ .||+|||+|.|.+... ...|
T Consensus 2 L~v~vi~a~~l~~~---~~---------------~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l 62 (117)
T cd08383 2 LRLRILEAKNLPSK---GT---------------RDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTL 62 (117)
T ss_pred eEEEEEEecCCCcC---CC---------------CCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEE
Confidence 89999999999865 33 8999999999987789999999 9999999999999874 3567
Q ss_pred EEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEE
Q 001250 426 HFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1114)
Q Consensus 426 ~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F 482 (1114)
.|.|+|.+.. ++.++|+ ++|..+..+...+.||+|...+++. +..|+|+|.++|
T Consensus 63 ~i~v~d~~~~~~~~~~g~--v~l~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 63 SFYNKDKRSKDRDIVIGK--VALSKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred EEEEEecccCCCeeEEEE--EEecCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 7888887754 3445555 5556666677789999998766543 245799999987
No 74
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=8.8e-15 Score=141.17 Aligned_cols=105 Identities=32% Similarity=0.448 Sum_probs=92.5
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC-CceEEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHF 427 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~-~~~L~f 427 (1114)
|+|+|++|++|+..+..+. +||||+|.+.+..+++|+++.++.||+|||+|.|.+... ...|.|
T Consensus 1 l~v~vi~a~~L~~~~~~~~---------------~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~ 65 (115)
T cd04040 1 LTVDVISAENLPSADRNGK---------------SDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKV 65 (115)
T ss_pred CEEEEEeeeCCCCCCCCCC---------------CCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEE
Confidence 6899999999998886554 899999999887778999999999999999999998764 578999
Q ss_pred EEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCC
Q 001250 428 FVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK 468 (1114)
Q Consensus 428 ~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gk 468 (1114)
+|||++.. ++++||++.+++.++..+...+.|++|....+.
T Consensus 66 ~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~ 107 (115)
T cd04040 66 EVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGG 107 (115)
T ss_pred EEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCc
Confidence 99999985 588999999999999988888999999755443
No 75
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.58 E-value=6.9e-15 Score=143.81 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=84.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecC--
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH-- 420 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~-- 420 (1114)
|.|.|+|++|++|+.+|..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.+..
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSL---------------RNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCC---------------CCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 679999999999998887654 89999999965 345699999999999999999999654
Q ss_pred --CCceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeec
Q 001250 421 --SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 421 --~~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
....|.|+|||++.. ++++||++.++|++... ...+.||+|.
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 247899999999985 58899999999998432 2346899983
No 76
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.58 E-value=9.1e-15 Score=143.27 Aligned_cols=102 Identities=23% Similarity=0.253 Sum_probs=87.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC--CEEEEeeeeecCCCCCeeceEEEEEecCC---
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS--- 421 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~--g~~v~RTrVI~nt~NPvWNE~F~f~va~~--- 421 (1114)
++|.|+|++|++|+.+|..+. +||||+|.+. +...+||++++++.||+|||+|.|.+...
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGT---------------SDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred CEEEEEEEEecCCCCccCCCC---------------CCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 579999999999998887664 8999999993 33446999999999999999999985322
Q ss_pred -CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeec
Q 001250 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 422 -~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
...|.|+|||+|.. ++++||++.|++.++..+...+.|++|.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 35799999999975 5889999999999999888889999985
No 77
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=8.3e-15 Score=141.52 Aligned_cols=98 Identities=19% Similarity=0.358 Sum_probs=85.9
Q ss_pred CCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC-CceEEEEEEEecCCCCccceEEEEeeeeeec-Cceeeee
Q 001250 382 TSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYS-GGKVEGT 459 (1114)
Q Consensus 382 tsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~-~~~L~f~V~D~D~~gddfIGqa~IpL~eL~s-G~~id~W 459 (1114)
.+||||+|.++++..++|++++++.||+|||.|.|.+.+. ...|.|+|+|++..++++||++.|+|.++.. +...+.|
T Consensus 12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~~w 91 (111)
T cd04052 12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQQW 91 (111)
T ss_pred CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcccee
Confidence 4899999999988778999999999999999999999876 4779999999998899999999999999864 4556899
Q ss_pred eeeccCCCCCCCCCCeEEEEEEEecc
Q 001250 460 YPVLNGSGKPCKPGATLTLSIQYTPM 485 (1114)
Q Consensus 460 ~pLl~~~Gkp~k~~g~L~L~l~F~p~ 485 (1114)
|+|.+ + ..|+|+++++|.|+
T Consensus 92 ~~L~~---~---~~G~i~~~~~~~p~ 111 (111)
T cd04052 92 FPLSG---N---GQGRIRISALWKPV 111 (111)
T ss_pred EECCC---C---CCCEEEEEEEEecC
Confidence 99964 2 34799999999985
No 78
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.58 E-value=9.2e-15 Score=143.32 Aligned_cols=102 Identities=25% Similarity=0.481 Sum_probs=90.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecC-CCCCeeceEEEEEecCC----
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISN-SEDPVWQQHFYVPVAHS---- 421 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~n-t~NPvWNE~F~f~va~~---- 421 (1114)
|+|+|+|++|++|++++.++. +||||+|.+.+... +|+++++ +.||+|||+|.|.+..+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~---------------~dpyv~v~~~~~~~-~T~~~~~~t~nP~Wne~f~f~v~~~~~~~ 64 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGK---------------IDPYVIIQCRTQER-KSKVAKGDGRNPEWNEKFKFTVEYPGWGG 64 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCC---------------cCceEEEEECCEee-eeeEcCCCCCCCcccceEEEEecCcccCC
Confidence 689999999999998887654 89999999988764 8888875 89999999999999877
Q ss_pred CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeecc
Q 001250 422 AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLN 464 (1114)
Q Consensus 422 ~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~ 464 (1114)
...|.|+|+|.+.. ++++||++.|++.++..+...+.|++|..
T Consensus 65 ~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 65 DTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 47899999999985 58999999999999998878899999964
No 79
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.57 E-value=1e-14 Score=140.78 Aligned_cols=96 Identities=23% Similarity=0.339 Sum_probs=80.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC--Cce
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--AAE 424 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~--~~~ 424 (1114)
|.|.|+|++|++|+..|.... ....+||||+|.+++.. .||++++++.||+|||+|.|.+.+. ...
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~-----------~~~~~DPYv~v~~~~~~-~kT~v~~~t~nPvWne~f~f~v~~~~~~~~ 68 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR-----------TGFDMDPFVIISFGRRV-FRTSWRRHTLNPVFNERLAFEVYPHEKNFD 68 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC-----------CCCccCceEEEEECCEe-EeeeeecCCCCCcccceEEEEEeCccCCCE
Confidence 789999999999998874321 01137999999998765 4999999999999999999998654 357
Q ss_pred EEEEEEEecCC-CCccceEEEEeeeeeecCc
Q 001250 425 VHFFVKDSDVV-GSELIGTVAIPVEQIYSGG 454 (1114)
Q Consensus 425 L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~ 454 (1114)
|.|+|||+|.. .+++||++.|+|++|..+.
T Consensus 69 L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 69 IQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred EEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 99999999985 6899999999999999764
No 80
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.56 E-value=1.3e-14 Score=141.59 Aligned_cols=102 Identities=24% Similarity=0.415 Sum_probs=87.0
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCcccccccccccCCCCCCCcEEEEEECC--E--EEEeeeeecCCCCCeeceEEEEEecC
Q 001250 346 HGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D-~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~--~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
.|.|.|+|++|++|+.++ ..+. +||||+|.+.. . ..+||++++++.||+|||+|.|.+..
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~ 77 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKR---------------SNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISK 77 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCC---------------CCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCH
Confidence 368999999999999888 4443 89999999842 1 34699999999999999999999865
Q ss_pred C---CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeee
Q 001250 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1114)
Q Consensus 421 ~---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pL 462 (1114)
. ...|.|+|||++.. .+++||++.|++.++..+...+.||+|
T Consensus 78 ~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 78 SQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred HHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 3 46899999999974 578999999999999878778999987
No 81
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.56 E-value=1.1e-14 Score=144.81 Aligned_cols=102 Identities=23% Similarity=0.280 Sum_probs=85.9
Q ss_pred ceEEEEEEEEeeCCCCCCCC-CcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 346 HGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~-g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
.+.|.|+|++|++|+.+|.. +. +||||+|.+.. ....||++++++.||+|||+|.|.+..
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~---------------~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~ 78 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKK---------------CHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEA 78 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCC---------------CCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCH
Confidence 36799999999999988864 43 89999999952 224599999999999999999999865
Q ss_pred C---CceEEEEEEEecC-CCCccceEEEEeeeeeec---Cceeeeeeee
Q 001250 421 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYS---GGKVEGTYPV 462 (1114)
Q Consensus 421 ~---~~~L~f~V~D~D~-~gddfIGqa~IpL~eL~s---G~~id~W~pL 462 (1114)
. ...|.|.|||.+. .++++||++.|+|.++.. +..+..||+|
T Consensus 79 ~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 79 DLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred HHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 4 4689999999997 468899999999999964 3467899998
No 82
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.56 E-value=2.1e-14 Score=138.35 Aligned_cols=97 Identities=21% Similarity=0.308 Sum_probs=84.1
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC-----C
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS-----A 422 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~-----~ 422 (1114)
.|+|+|++|++|+ .+ .+||||+|.+++++. ||++++++.||+|||+|.|.+..+ .
T Consensus 5 ~l~V~v~~a~~L~----~~---------------~~dpyv~v~~~~~~~-kT~~~~~t~nP~wne~f~f~~~~~~~~l~~ 64 (111)
T cd04011 5 QVRVRVIEARQLV----GG---------------NIDPVVKVEVGGQKK-YTSVKKGTNCPFYNEYFFFNFHESPDELFD 64 (111)
T ss_pred EEEEEEEEcccCC----CC---------------CCCCEEEEEECCEee-eeeEEeccCCCccccEEEEecCCCHHHHhc
Confidence 4899999999998 23 289999999998875 999999999999999999998654 2
Q ss_pred ceEEEEEEEecCC-CCccceEEEEeeeeeecC---ceeeeeeeecc
Q 001250 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG---GKVEGTYPVLN 464 (1114)
Q Consensus 423 ~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG---~~id~W~pLl~ 464 (1114)
..|.|+|+|++.. ++++||++.|+++++..+ ...++|++|.+
T Consensus 65 ~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 65 KIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 5799999999985 489999999999999866 45789999975
No 83
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.55 E-value=1.2e-14 Score=148.63 Aligned_cols=98 Identities=26% Similarity=0.412 Sum_probs=85.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCE----------------------------EEE
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----------------------------VVG 397 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~----------------------------~v~ 397 (1114)
.+.|.|+|++|++|.++|..+. +||||+|.+... .++
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~---------------~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGF---------------SDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIK 91 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCC---------------CCceEEEEEcccccccccccccccccccccccccccccccccE
Confidence 3569999999999999998775 899999998531 246
Q ss_pred eeeeecCCCCCeeceEEEEEecCC-CceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeee
Q 001250 398 RTFVISNSEDPVWQQHFYVPVAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1114)
Q Consensus 398 RTrVI~nt~NPvWNE~F~f~va~~-~~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pL 462 (1114)
+|++++++.||+|||+|.|.+.+. ...|.|+|||++ ++|||++.|++++|.. ..++.||+|
T Consensus 92 kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 92 VTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999999999999999765 478999999998 8999999999999984 457999987
No 84
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.55 E-value=5e-14 Score=138.01 Aligned_cols=117 Identities=30% Similarity=0.504 Sum_probs=96.9
Q ss_pred EEEEEEEEeeCCCCCC--CCCcccccccccccCCCCCCCcEEEEEECC-----EEEEeeeeecCCC-CCeeceEEEEEec
Q 001250 348 NLDIWIYSAKNLPNMD--MFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSE-DPVWQQHFYVPVA 419 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D--~~g~~~~~~~~k~~~~~itsDPYV~V~L~g-----~~v~RTrVI~nt~-NPvWNE~F~f~va 419 (1114)
.|+|+|++|++|+.++ ..+. +||||+|++.+ ....||+++.++. ||+|||+|.|.+.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~ 67 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSI---------------VDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVT 67 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCc---------------cCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEe
Confidence 4899999999999877 3333 89999999953 2335999988865 9999999999987
Q ss_pred CCC-ceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEe
Q 001250 420 HSA-AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1114)
Q Consensus 420 ~~~-~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~ 483 (1114)
.+. ..|.|+|+|++..++++||++.+++++|..|. +|++|.+..|+.. ..|.|.++++++
T Consensus 68 ~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~-~~~~l~v~~~~~ 128 (128)
T cd00275 68 VPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPL-ELSTLFVHIDIT 128 (128)
T ss_pred CCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCCC-cceeEEEEEEEC
Confidence 664 67999999999888999999999999998765 7999998888754 346888888763
No 85
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.55 E-value=9.2e-15 Score=145.02 Aligned_cols=108 Identities=22% Similarity=0.342 Sum_probs=91.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecCC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
.|+|.|+|++|++|+.+|..+. +||||+|.+.+ ....||++++++.||+|||+|.|.+...
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~---------------~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 76 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGY---------------SDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS 76 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCC---------------CCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHH
Confidence 4789999999999999987664 89999999953 2346999999999999999999998754
Q ss_pred ---CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 422 ---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
...|.|+|||+|.. .+++||++.|++.+ .|...+.|++++...++++
T Consensus 77 ~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~ 127 (133)
T cd08384 77 DLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKI 127 (133)
T ss_pred HhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCCh
Confidence 36899999999975 58999999999985 4666789999987766654
No 86
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.54 E-value=2.1e-14 Score=142.11 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=85.9
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC-----EEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g-----~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
.+.|.|+|++|+||+.++..+. +||||+|.+-. ....||+|++++.||+|||+|.|++..
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~---------------~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~ 77 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPEN---------------SKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISS 77 (124)
T ss_pred CCEEEEEEeEecCCcccccCCC---------------CCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCH
Confidence 3679999999999998876543 89999999842 224699999999999999999999875
Q ss_pred C---CceEEEEEEEecCC-CCccceEEEEeeeeee-cCceeeeeeee
Q 001250 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIY-SGGKVEGTYPV 462 (1114)
Q Consensus 421 ~---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~-sG~~id~W~pL 462 (1114)
. ...|.|+|||++.. .+++||++.|++.++. .+....+||+|
T Consensus 78 ~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 78 TKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred HHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 4 47899999999985 5889999999999995 44457889976
No 87
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.54 E-value=6e-14 Score=143.71 Aligned_cols=118 Identities=17% Similarity=0.320 Sum_probs=92.1
Q ss_pred EEEEEEEeeC--CCCCCCCCcccccccccccCCCCCCCcEEEEEE----CCEEEEeeeeecCCCCCeeceEEEEEecCC-
Q 001250 349 LDIWIYSAKN--LPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV----AGAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1114)
Q Consensus 349 L~VtI~eAk~--L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L----~g~~v~RTrVI~nt~NPvWNE~F~f~va~~- 421 (1114)
++++|..|.+ |+..+..+. +||||++++ .+...+||+|++++.||+|||+|.|.+...
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~---------------~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~ 68 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKD---------------LDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKH 68 (155)
T ss_pred eEEEEEEeeccccCCCcCCCC---------------CCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEecccc
Confidence 4555555665 665554433 899999998 334456999999999999999999998644
Q ss_pred --------CceEEEEEEEecCC--CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEec
Q 001250 422 --------AAEVHFFVKDSDVV--GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1114)
Q Consensus 422 --------~~~L~f~V~D~D~~--gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p 484 (1114)
...|.|+|||++.+ +|++||++.|+|+.+..+..+..|++|++ ..+++ ||+|+++++...
T Consensus 69 ~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~~--Gg~l~v~ir~r~ 138 (155)
T cd08690 69 RSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKAT--GGKLEVKVRLRE 138 (155)
T ss_pred chhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCCc--CCEEEEEEEecC
Confidence 24699999999984 69999999999999987767788999984 33443 579999998653
No 88
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.53 E-value=4.6e-14 Score=137.78 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=88.0
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCcccccccccccCCCCCCCcEEEEEEC--CEEEEeeeeecCCCCCeeceEEEEEecCC-
Q 001250 346 HGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D-~~g~~~~~~~~k~~~~~itsDPYV~V~L~--g~~v~RTrVI~nt~NPvWNE~F~f~va~~- 421 (1114)
.+.|.|+|++|++|+.+| ..+. +||||+|.+. +...+||++++++.||+|||+|.|.+...
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~---------------~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~ 77 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAH---------------CDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKE 77 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCC---------------CCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHH
Confidence 457999999999999887 4443 8999999983 34456999999999999999999998654
Q ss_pred --CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeec
Q 001250 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 422 --~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
...|.|+|||++.. .+++||++.|+|.++......+.|++|.
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 36799999999985 4889999999999999877778999984
No 89
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.53 E-value=2.4e-14 Score=142.98 Aligned_cols=108 Identities=27% Similarity=0.402 Sum_probs=90.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC--CEE--EEeeeeecCCCCCeeceEEEEEecCC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAV--VGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~--g~~--v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
.++|.|+|++|++|+.+|..+. +||||+|.+. +++ ..||+|++++.||+|||+|.|.+...
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~---------------~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~ 78 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGL---------------ADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSE 78 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC---------------CCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHH
Confidence 4579999999999999887664 8999999984 332 35899999999999999999998643
Q ss_pred ---CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 422 ---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
...|.|+|||+|.. ++++||++.|++.. .+...+.|++|.+..|+++
T Consensus 79 ~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i 129 (136)
T cd08404 79 ELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQI 129 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCee
Confidence 35789999999985 58899999999998 4666789999987777754
No 90
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.53 E-value=7.2e-14 Score=138.67 Aligned_cols=103 Identities=25% Similarity=0.355 Sum_probs=84.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC--EEEEeeeeecCCCCCeeceEEEEE-ecC---
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVP-VAH--- 420 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~~v~RTrVI~nt~NPvWNE~F~f~-va~--- 420 (1114)
++|.|+|++|++|+.+|..++ .+||||+|.+.. +..+||++++++.||+|||+|.|. +..
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~--------------~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~ 81 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSG--------------TSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQL 81 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCC--------------CcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHh
Confidence 479999999999998886522 389999999952 334599999999999999999994 432
Q ss_pred CCceEEEEEEEecCC-CCccceEEEEeeeeeecC--ceeeeeeeec
Q 001250 421 SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG--GKVEGTYPVL 463 (1114)
Q Consensus 421 ~~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG--~~id~W~pLl 463 (1114)
....|+|+|||+|.. ++++||++.|+|.++..+ ..+..|.+|.
T Consensus 82 ~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 82 QDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 235799999999874 589999999999999643 6688999874
No 91
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.52 E-value=1.9e-14 Score=143.15 Aligned_cols=109 Identities=30% Similarity=0.407 Sum_probs=90.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC--CE--EEEeeeeecCCCCCeeceEEEEEecC
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~--g~--~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
..|+|+|+|++|++|+.+|..+. +||||+|.+. ++ ..+||++++++.||+|||+|.|.+..
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~---------------~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~ 76 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGF---------------SDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPP 76 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCC---------------CCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCH
Confidence 35789999999999999987765 8999999984 32 34699999999999999999999864
Q ss_pred C---CceEEEEEEEecCCC-CccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 421 S---AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 421 ~---~~~L~f~V~D~D~~g-ddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
. ...|.|+|+|+|..+ +++||++.|++. ..|...+.|++++...++++
T Consensus 77 ~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 77 ENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPI 128 (134)
T ss_pred HHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCee
Confidence 3 246999999999865 899999999987 34555679999998777764
No 92
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.51 E-value=2.3e-14 Score=143.00 Aligned_cols=109 Identities=27% Similarity=0.400 Sum_probs=90.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC--CE--EEEeeeeecCCCCCeeceEEEEEecC
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~--g~--~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
..|+|+|+|++|++|+.+|..+. +||||+|.+. +. ..++|++++++.||+|||+|.|.+..
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~ 77 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGL---------------SDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPF 77 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCC---------------CCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCH
Confidence 35789999999999999887664 8999999994 22 34589999999999999999999864
Q ss_pred C---CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 421 ~---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
. ...|.|+|||+|.. ++++||++.|++.. .|...+.|++++...++++
T Consensus 78 ~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~~ 129 (136)
T cd08402 78 EQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRPI 129 (136)
T ss_pred HHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCee
Confidence 4 24799999999985 47899999999976 3666789999987666654
No 93
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.51 E-value=4.7e-14 Score=145.63 Aligned_cols=104 Identities=25% Similarity=0.361 Sum_probs=85.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC----CEEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~----g~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
..|.|.|+|++|++|+.+|..+. +||||+|.+. +...+||+|++++.||+|||+|.|.+..
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~---------------~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~ 89 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGT---------------SDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVS 89 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCC---------------CCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCC
Confidence 46889999999999999887554 8999999983 3345699999999999999999998542
Q ss_pred C----CceEEEEEEEecCCC-CccceEEEEeeeeeecCceeeeeeeec
Q 001250 421 S----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 421 ~----~~~L~f~V~D~D~~g-ddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
. ...|.|+|||+|..+ +++||++.|++.++..-...+.|++|.
T Consensus 90 ~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 90 PEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred HHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 2 357999999999865 899999999999987544456777663
No 94
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.51 E-value=6.3e-14 Score=139.22 Aligned_cols=88 Identities=28% Similarity=0.397 Sum_probs=76.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecC--CCce
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH--SAAE 424 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~--~~~~ 424 (1114)
|+|+|+|++|++|+ .+..+. +||||+|.++++ ++||++++++.||+|||+|.|.... ....
T Consensus 28 ~~L~V~V~~A~~L~-~d~~g~---------------~DPYVkV~~~~~-~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~ 90 (127)
T cd04032 28 ATLTVTVLRATGLW-GDYFTS---------------TDGYVKVFFGGQ-EKRTEVIWNNNNPRWNATFDFGSVELSPGGK 90 (127)
T ss_pred EEEEEEEEECCCCC-cCcCCC---------------CCeEEEEEECCc-cccCceecCCCCCcCCCEEEEecccCCCCCE
Confidence 68999999999998 455443 899999999888 4699999999999999999998533 3689
Q ss_pred EEEEEEEecCC-CCccceEEEEeeeeee
Q 001250 425 VHFFVKDSDVV-GSELIGTVAIPVEQIY 451 (1114)
Q Consensus 425 L~f~V~D~D~~-gddfIGqa~IpL~eL~ 451 (1114)
|+|+|||+|.. ++++||++.++|....
T Consensus 91 L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 91 LRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred EEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 99999999986 7999999999998554
No 95
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.51 E-value=6.6e-14 Score=138.14 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=85.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC--EEEEeeeeecCCCCCeeceEEEEE-ecCC--
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVP-VAHS-- 421 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~~v~RTrVI~nt~NPvWNE~F~f~-va~~-- 421 (1114)
+.|.|+|++|++|+.+|..+. +||||++.+.. ....||+|+++ .||+|||+|.|+ +...
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~---------------~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGA---------------SSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred CEEEEEEEEecCCCchhcCCC---------------CCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 579999999999999886553 89999988732 34459999988 999999999998 5432
Q ss_pred -CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeec
Q 001250 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 422 -~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
...|.|+|+|++.. ++++||++.|+|+++..+.....|++|.
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 47899999999975 4899999999999999888889999984
No 96
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.50 E-value=3.6e-14 Score=142.53 Aligned_cols=108 Identities=20% Similarity=0.251 Sum_probs=89.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC--CEE--EEeeeeecCCCCCeeceEEEEEecCC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAV--VGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~--g~~--v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
.+.|.|+|++|++|+.+|..+. +||||+|.+. +++ ..||+|+++++||+|||+|.|.+...
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~---------------~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~ 78 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTT---------------ADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI 78 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCC---------------CCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH
Confidence 3579999999999998886654 8999999994 222 34899999999999999999998653
Q ss_pred ---CceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 422 ---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 422 ---~~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
...|+|+|+|+|. .++++||++.|+... .|...+.|..++...+++.
T Consensus 79 ~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~~~~v 129 (136)
T cd08406 79 VLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLASLRKPV 129 (136)
T ss_pred HhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHCCCCee
Confidence 4789999999997 568999999998763 5677789999987766654
No 97
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.50 E-value=3.5e-14 Score=140.18 Aligned_cols=107 Identities=27% Similarity=0.383 Sum_probs=92.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCE----EEEeeeeecCCCCCeeceEEEEEecCC-
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA----VVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~----~v~RTrVI~nt~NPvWNE~F~f~va~~- 421 (1114)
|+|.|+|++|++|+..+..+. +||||+|.+.+. ..++|++++++.||+|||+|.|.+...
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~---------------~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~ 78 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGL---------------SDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ 78 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCC---------------CCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH
Confidence 689999999999998876554 899999998642 346999999999999999999998765
Q ss_pred --CceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 422 --AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 422 --~~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
...|.|+|+|.+. .++++||++.|++.+ .|...+.|++|++..++++
T Consensus 79 l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~ 128 (134)
T cd00276 79 LEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPI 128 (134)
T ss_pred hCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCce
Confidence 4789999999998 568999999999999 6777899999998777654
No 98
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.50 E-value=8.2e-14 Score=139.96 Aligned_cols=101 Identities=19% Similarity=0.379 Sum_probs=87.0
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC---EEEEeeeeecCCCCCeeceEEEEEecCC----
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG---AVVGRTFVISNSEDPVWQQHFYVPVAHS---- 421 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g---~~v~RTrVI~nt~NPvWNE~F~f~va~~---- 421 (1114)
|.|+|++|++|+.+ ..+. +||||+|.+.. ...+||++++++.||+|||+|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~---------------~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~ 64 (137)
T cd08675 1 LSVRVLECRDLALK-SNGT---------------CDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYE 64 (137)
T ss_pred CEEEEEEccCCCcc-cCCC---------------CCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccc
Confidence 68999999999877 4443 89999999983 4446999999999999999999998664
Q ss_pred ------------CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccC
Q 001250 422 ------------AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1114)
Q Consensus 422 ------------~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~ 465 (1114)
...|.|+|||++.. +++|||++.|++.++..+...+.||+|...
T Consensus 65 ~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 65 KKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred ccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 35899999999986 689999999999999877678899999754
No 99
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.50 E-value=7.2e-14 Score=138.28 Aligned_cols=107 Identities=26% Similarity=0.405 Sum_probs=90.9
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEec
Q 001250 344 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVA 419 (1114)
Q Consensus 344 LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va 419 (1114)
+-.|+|+|+|++|++|+..+..+. +||||+|.+.+ ...+||++++++.||.|||+|.|.+.
T Consensus 10 ~~~~~l~v~i~~a~nL~~~~~~~~---------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~ 74 (131)
T cd04026 10 VKDNKLTVEVREAKNLIPMDPNGL---------------SDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74 (131)
T ss_pred ECCCEEEEEEEEeeCCCCcCCCCC---------------CCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCC
Confidence 344789999999999998876553 89999999963 35579999999999999999999987
Q ss_pred CC--CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCC
Q 001250 420 HS--AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGS 466 (1114)
Q Consensus 420 ~~--~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~ 466 (1114)
.. ...|.|+|||++.. ++++||++.++++++... ..+.||+|.+.+
T Consensus 75 ~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 75 PADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred chhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 54 46899999999875 588999999999999854 678999998653
No 100
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.50 E-value=4e-14 Score=141.28 Aligned_cols=108 Identities=22% Similarity=0.354 Sum_probs=90.6
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC--CE--EEEeeeeecCCCCCeeceEEEEEecCC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~--g~--~v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
.|+|.|+|++|++|+.+|..+. +||||+|.+. +. ...||++++++.||+|||+|.|.+...
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~---------------~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~ 78 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGT---------------SDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE 78 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCC---------------CCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH
Confidence 4789999999999998887664 8999999983 22 235999999999999999999997532
Q ss_pred ---CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 422 ---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
...|.|+|+|++.. .+++||++.|++.+. |...+.|++|+...++++
T Consensus 79 ~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~ 129 (136)
T cd08405 79 RLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPV 129 (136)
T ss_pred HhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCch
Confidence 36799999999986 479999999999876 666789999998777765
No 101
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.49 E-value=3.7e-14 Score=142.83 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=91.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC--EE--EEeeeeecCCCCCeeceEEEEEecCC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AV--VGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~~--v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
.|.|.|+|++|++|+.+|.... .++||||+|.+.. ++ .+||++++++.||+|||.|.|.+.+.
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~-------------~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLL-------------LGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC-------------CCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 4789999999999999884311 1389999999854 22 34999999999999999999998764
Q ss_pred ---CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 422 ---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
...|.|+|+|+|.. ++++||++.|++.. .|...+.|..++...++++
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~v 131 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQI 131 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCch
Confidence 46799999999985 58999999999975 6777889999987767665
No 102
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.48 E-value=1.4e-13 Score=139.78 Aligned_cols=91 Identities=26% Similarity=0.466 Sum_probs=82.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEE
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVH 426 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~ 426 (1114)
|.|+|+|++|++|+..|. +. +||||+|.+++++ +||++++++.||+|||+|.|.+.++...|.
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~---------------sDPYV~v~~g~~~-~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~ 64 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TS---------------SDPYVVLTLGNQK-VKTRVIKKNLNPVWNEELTLSVPNPMAPLK 64 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CC---------------cCcEEEEEECCEE-EEeeeEcCCCCCeecccEEEEecCCCCEEE
Confidence 889999999999998776 43 8999999998876 599999999999999999999998888999
Q ss_pred EEEEEecCC-CCccceEEEEeeeeeecCc
Q 001250 427 FFVKDSDVV-GSELIGTVAIPVEQIYSGG 454 (1114)
Q Consensus 427 f~V~D~D~~-gddfIGqa~IpL~eL~sG~ 454 (1114)
|+|||+|.+ ++++||++.+++.+|....
T Consensus 65 ~~V~D~d~~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 65 LEVFDKDTFSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHhhhhh
Confidence 999999985 5899999999999988654
No 103
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.47 E-value=7e-14 Score=139.83 Aligned_cols=108 Identities=25% Similarity=0.366 Sum_probs=87.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC-C-E--EEEeeeeecCCCCCeeceEEEEEecCC-
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA-G-A--VVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~-g-~--~v~RTrVI~nt~NPvWNE~F~f~va~~- 421 (1114)
|.|.|+|++|++|+.+|..+. +||||+|.+. + . ..++|++++++.||+|||+|.|.+...
T Consensus 14 ~~L~V~vi~a~~L~~~d~~g~---------------~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~ 78 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMSQG---------------SDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEE 78 (135)
T ss_pred CeEEEEEEEecCCCcccCCCC---------------CCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHH
Confidence 789999999999999987664 8999999983 2 2 235999999999999999999998543
Q ss_pred --CceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 422 --AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 422 --~~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
...|.|+|+|+|. .++++||++.|...... +...+.|+.|++..++++
T Consensus 79 l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~~ 129 (135)
T cd08410 79 LENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTAV 129 (135)
T ss_pred hCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCEe
Confidence 2469999999997 56899999987653332 234689999998877754
No 104
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.47 E-value=4.3e-13 Score=132.45 Aligned_cols=115 Identities=27% Similarity=0.389 Sum_probs=89.7
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEEE
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f 427 (1114)
.|.|+|.+|+ |...+.++. +||||+|.+++...+||++++++.||+|||+|.|.+. ....|.|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~---------------~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~ 65 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFK---------------PDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEF 65 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCC---------------CCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEE
Confidence 5899999999 544444443 8999999999875679999999999999999999986 4568999
Q ss_pred EEEEecCC-CCccceEEEEeeeeeecCc---e--eeeeeeeccCCCC-CCCCCCeEEEEE
Q 001250 428 FVKDSDVV-GSELIGTVAIPVEQIYSGG---K--VEGTYPVLNGSGK-PCKPGATLTLSI 480 (1114)
Q Consensus 428 ~V~D~D~~-gddfIGqa~IpL~eL~sG~---~--id~W~pLl~~~Gk-p~k~~g~L~L~l 480 (1114)
+|||++.. .+++||++.++|.++..+. . ...|++|.... . ..+..|.|++.+
T Consensus 66 ~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~ 124 (125)
T cd04021 66 KVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN-KGSSVKVGELTVIL 124 (125)
T ss_pred EEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC-CCcceeeeeEEEEe
Confidence 99999985 6899999999999988432 1 34689997433 2 122346777654
No 105
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.47 E-value=1.4e-13 Score=137.16 Aligned_cols=91 Identities=27% Similarity=0.415 Sum_probs=79.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC------EEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g------~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
+.|+|+|++|++|+.++.++. +||||+|.+.+ ...+||+++++++||+|||+|.|.+..
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~---------------~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGS---------------SDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCC---------------CCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence 469999999999998887664 89999999963 335699999999999999999999865
Q ss_pred C-----CceEEEEEEEecCCC-CccceEEEEeeeeeec
Q 001250 421 S-----AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYS 452 (1114)
Q Consensus 421 ~-----~~~L~f~V~D~D~~g-ddfIGqa~IpL~eL~s 452 (1114)
. ...|.|+|||++..+ +++||++.|+|++|..
T Consensus 81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 2 468999999999866 8999999999999984
No 106
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.46 E-value=2.2e-13 Score=133.07 Aligned_cols=98 Identities=29% Similarity=0.398 Sum_probs=83.8
Q ss_pred EEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEE------EEeeeeecCCCCCeeceEEEEEecC-CCce
Q 001250 352 WIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAV------VGRTFVISNSEDPVWQQHFYVPVAH-SAAE 424 (1114)
Q Consensus 352 tI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~------v~RTrVI~nt~NPvWNE~F~f~va~-~~~~ 424 (1114)
..++|++|+.+|.++. +||||+|.+.+.. ++||++++++.||+|||+|.|.+.. ....
T Consensus 5 ~~i~a~~L~~~d~~g~---------------~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~ 69 (120)
T cd04048 5 LSISCRNLLDKDVLSK---------------SDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQK 69 (120)
T ss_pred EEEEccCCCCCCCCCC---------------CCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeE
Confidence 3578999999987765 8999999997643 5799999999999999999998643 3578
Q ss_pred EEEEEEEecC-----CCCccceEEEEeeeeeecCceeeeeeeecc
Q 001250 425 VHFFVKDSDV-----VGSELIGTVAIPVEQIYSGGKVEGTYPVLN 464 (1114)
Q Consensus 425 L~f~V~D~D~-----~gddfIGqa~IpL~eL~sG~~id~W~pLl~ 464 (1114)
|.|+|||+|. .++++||++.+++.+|..+.....|++|..
T Consensus 70 l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 70 LRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred EEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 9999999995 468999999999999998777778999943
No 107
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.46 E-value=2.1e-14 Score=161.35 Aligned_cols=106 Identities=27% Similarity=0.427 Sum_probs=92.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC----CEEEEeeeeecCCCCCeeceEEEEEecCC-
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~----g~~v~RTrVI~nt~NPvWNE~F~f~va~~- 421 (1114)
..|+|+|.+|+||.+||.+|. |||||++.+- +...+||++|+.++||+|||+|+|.+...
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGl---------------SDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~D 244 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGL---------------SDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSD 244 (683)
T ss_pred ceEEEEehhhccccccCCCCC---------------CCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEeccccc
Confidence 369999999999999999886 9999999994 24445999999999999999999998755
Q ss_pred -CceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccC-CCC
Q 001250 422 -AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNG-SGK 468 (1114)
Q Consensus 422 -~~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~-~Gk 468 (1114)
...|.++|||||. +.+||+|...+.+++|.. ..+++||.|++. .|+
T Consensus 245 kdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K-~p~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 245 KDRRLSIEVWDWDRTSRNDFMGSLSFGISELQK-APVDGWYKLLSQEEGE 293 (683)
T ss_pred ccceeEEEEecccccccccccceecccHHHHhh-cchhhHHHHhhhhcCc
Confidence 4789999999998 679999999999999984 567899999975 344
No 108
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.46 E-value=3.7e-13 Score=132.71 Aligned_cols=89 Identities=27% Similarity=0.449 Sum_probs=78.9
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEE-EeeeeecCCCCCeeceEEEEEecCC-CceEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVV-GRTFVISNSEDPVWQQHFYVPVAHS-AAEVH 426 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v-~RTrVI~nt~NPvWNE~F~f~va~~-~~~L~ 426 (1114)
|+|+|++|++|+.+|..+. +||||+|.+++... .||++++++.||+|||+|.|.+..+ ...|.
T Consensus 2 lrV~Vi~a~~L~~~d~~g~---------------~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~ 66 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGK---------------SDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILK 66 (124)
T ss_pred EEEEEEECcCCCCCCCCCC---------------CCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEE
Confidence 7999999999999987665 89999999988654 5899999999999999999998655 47899
Q ss_pred EEEEEecCC-CCccceEEEEeeeeeec
Q 001250 427 FFVKDSDVV-GSELIGTVAIPVEQIYS 452 (1114)
Q Consensus 427 f~V~D~D~~-gddfIGqa~IpL~eL~s 452 (1114)
|+|||+|.. ++++||++.|++.+...
T Consensus 67 ~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 67 ISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred EEEEECCCCCCCceeEEEEEeeccccc
Confidence 999999985 68999999999998764
No 109
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.45 E-value=1.1e-12 Score=135.39 Aligned_cols=143 Identities=22% Similarity=0.240 Sum_probs=107.8
Q ss_pred hHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccccccccC
Q 001250 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTH 625 (1114)
Q Consensus 546 ~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~ 625 (1114)
.++.++++|.+|+++|+|+.|.+.+.. ......|.+.|++++++||+|+||+++....... .
T Consensus 22 ~~~~i~~~I~~A~~~I~i~~~~~~~~~-------~~~~~~l~~~L~~a~~rGv~V~il~~~~~~~~~~-----------~ 83 (176)
T cd00138 22 DLDALLEAISNAKKSIYIASFYLSPLI-------TEYGPVILDALLAAARRGVKVRILVDEWSNTDLK-----------I 83 (176)
T ss_pred HHHHHHHHHHhhheEEEEEEeEecccc-------cccchHHHHHHHHHHHCCCEEEEEEcccccCCch-----------H
Confidence 689999999999999999999776433 1135789999999999999999997655432100 0
Q ss_pred cHHHHHHHhc---CCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCC
Q 001250 626 DEETRRVFKH---SSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHH 702 (1114)
Q Consensus 626 d~~~~~~~~h---~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H 702 (1114)
.......++. .+|++...+... . ...++|+|++|||+ .++++||.|+....+.
T Consensus 84 ~~~~~~~l~~~~~~~i~~~~~~~~~-----------~-~~~~~H~K~~iiD~--------~~~~vGS~N~~~~~~~---- 139 (176)
T cd00138 84 SSAYLDSLRALLDIGVRVFLIRTDK-----------T-YGGVLHTKLVIVDD--------ETAYIGSANLDGRSLT---- 139 (176)
T ss_pred HHHHHHHHHHhhcCceEEEEEcCCc-----------c-cccceeeeEEEEcC--------CEEEEECCcCChhhhh----
Confidence 1223334443 378876544310 0 23689999999999 7999999999986552
Q ss_pred CcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCH--HHHHHHHHHHHHHHHh
Q 001250 703 PLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP--AAYDVLTNFEERWRKA 759 (1114)
Q Consensus 703 ~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGP--AA~Dl~~~F~qRWn~a 759 (1114)
.++|+.+.+++| +|.++.+.|.+.|+..
T Consensus 140 -----------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 140 -----------------------------LNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred -----------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 347899999999 6999999999999864
No 110
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.44 E-value=2.3e-13 Score=136.17 Aligned_cols=109 Identities=18% Similarity=0.260 Sum_probs=85.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC--C--EEEEeeeeecCCC-CCeeceEEEEEecC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--G--AVVGRTFVISNSE-DPVWQQHFYVPVAH 420 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~--g--~~v~RTrVI~nt~-NPvWNE~F~f~va~ 420 (1114)
.|.|.|+|++|++|++++..+ ++||||+|++- + ...+||+|++++. ||+|||+|.|.+..
T Consensus 13 ~~rLtV~VikarnL~~~~~~~---------------~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~ 77 (135)
T cd08692 13 NSRIQLQILEAQNLPSSSTPL---------------TLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQ 77 (135)
T ss_pred CCeEEEEEEEccCCCcccCCC---------------CCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCc
Confidence 467999999999999864322 27999999984 2 2335999999985 69999999999976
Q ss_pred CC--ceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 421 SA--AEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 421 ~~--~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
.. ..|.|+|+|+|. .++++||++.|+.++. .+...+.|.+++...++++
T Consensus 78 ~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 78 QEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred hhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 53 456777788776 4699999999999864 3455789999987666654
No 111
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.44 E-value=1.5e-13 Score=137.98 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=90.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC--E--EEEeeeeecCCCCCeeceEEEEEecCC-
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~--~v~RTrVI~nt~NPvWNE~F~f~va~~- 421 (1114)
++|.|+|++|++|+.+| .+. +||||+|.+.. . ..+||++++++.||+|||+|.|.+...
T Consensus 15 ~~L~V~V~~a~nL~~~~-~~~---------------~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-HAH---------------TSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred CeEEEEEEEecCCCccc-CCC---------------CCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 67999999999999888 443 89999999853 2 235999999999999999999998643
Q ss_pred --CceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 422 --AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 422 --~~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
...|.|+|+|.+. .++++||++.|+......|...+.|..++...++++
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i 130 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELI 130 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCce
Confidence 3689999999996 568999999999877777888899999986555543
No 112
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.43 E-value=8.4e-13 Score=129.33 Aligned_cols=100 Identities=23% Similarity=0.320 Sum_probs=82.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecCC-
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~~- 421 (1114)
++|+|+|++|++|++.+..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.....
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~---------------~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 15 SALHCTIIRAKGLKAMDANGL---------------SDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred CEEEEEEEEeeCCCCCCCCCC---------------CCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 579999999999998876554 89999999842 3356999999999999999999963222
Q ss_pred ---CceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeee
Q 001250 422 ---AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYP 461 (1114)
Q Consensus 422 ---~~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~p 461 (1114)
...|.|+|||++..++++||++.+++++|..+...+.|+.
T Consensus 80 ~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 80 DIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred HhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 3689999999987788999999999999997765555543
No 113
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.42 E-value=1.4e-12 Score=131.18 Aligned_cols=114 Identities=25% Similarity=0.413 Sum_probs=88.1
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC--E----------EEEeeeeecCCCCCee-ceEEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A----------VVGRTFVISNSEDPVW-QQHFY 415 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~----------~v~RTrVI~nt~NPvW-NE~F~ 415 (1114)
..|++++|++|+ +|.+++ +||||+|.+.. . ...||+++++++||+| ||+|.
T Consensus 3 ~~~~~~~A~~L~-~~~fg~---------------~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~ 66 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFN---------------PDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFV 66 (137)
T ss_pred EEEEEEEeCCCC-CccCCC---------------CCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEE
Confidence 689999999998 777665 99999999953 1 1469999999999999 99999
Q ss_pred EEecCCCceEEEEEEEecCC----CCccceEEEEeeeeeecC---ceeeeeeeeccCCCCCCCCCCeEEEEE
Q 001250 416 VPVAHSAAEVHFFVKDSDVV----GSELIGTVAIPVEQIYSG---GKVEGTYPVLNGSGKPCKPGATLTLSI 480 (1114)
Q Consensus 416 f~va~~~~~L~f~V~D~D~~----gddfIGqa~IpL~eL~sG---~~id~W~pLl~~~Gkp~k~~g~L~L~l 480 (1114)
|.+. ....|.|+|+|++.. ++++||++.|++.+|..+ .....|++|..+..... -.|+|.+++
T Consensus 67 f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~-v~G~~~l~~ 136 (137)
T cd08691 67 FVGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDH-VSGQLTFRF 136 (137)
T ss_pred EEcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCc-EEEEEEEEe
Confidence 9985 346899999998753 279999999999999865 33568999863332222 234555543
No 114
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.41 E-value=4.5e-13 Score=176.58 Aligned_cols=122 Identities=20% Similarity=0.409 Sum_probs=101.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCC--
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-- 422 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~-- 422 (1114)
+-|.|+|+|++|++|. .+ ++. +||||+|.+++....||||++++.||+|||+|+|.+.++.
T Consensus 1978 ~~G~L~V~V~~a~nl~-~~-~~~---------------sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~ 2040 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK-QS-MGN---------------TNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKG 2040 (2102)
T ss_pred CCcceEEEEeeccccc-cc-cCC---------------CCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCC
Confidence 4579999999999998 32 343 8999999999664459999999999999999999888775
Q ss_pred ceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEec
Q 001250 423 AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1114)
Q Consensus 423 ~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p 484 (1114)
..|+|+|||+|.++++.+|.+.|++.++..+..+++||+|.+ +|++.+..-+|+|.++|.+
T Consensus 2041 ~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2041 QKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCc-ccccCCCcceEEEEEEecC
Confidence 679999999999999999999999999998889999999974 3332211114999998865
No 115
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.39 E-value=2.3e-12 Score=126.06 Aligned_cols=79 Identities=16% Similarity=0.363 Sum_probs=66.9
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecCCCce
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHSAAE 424 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~ 424 (1114)
|.|+|.+|+||+ +. +||||++.+.. ...+||+++++++||+|||+|.|.+.. ...
T Consensus 1 L~V~V~~A~~L~-----~~---------------sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~ 59 (118)
T cd08686 1 LNVIVHSAQGFK-----QS---------------ANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQT 59 (118)
T ss_pred CEEEEEeCCCCC-----CC---------------CCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCE
Confidence 689999999996 21 89999999964 346799999999999999999999974 669
Q ss_pred EEEEEEEec-------C-CCCccceEEEEeee
Q 001250 425 VHFFVKDSD-------V-VGSELIGTVAIPVE 448 (1114)
Q Consensus 425 L~f~V~D~D-------~-~gddfIGqa~IpL~ 448 (1114)
|.|.|||++ . ..|++||++.|.++
T Consensus 60 L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 60 LRILCYEKCYSKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred EEEEEEEcccccccccccCcccEEEEEEEEEC
Confidence 999999983 3 35889988888774
No 116
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.38 E-value=6.4e-13 Score=133.77 Aligned_cols=109 Identities=20% Similarity=0.302 Sum_probs=88.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC---CE--EEEeeeeecCCCCCeeceEEEEEecC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---GA--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~---g~--~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
.++|.|+|++|++|+.++..+. +||||+|.+. +. ...||++++++.||+|||+|.|++..
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~---------------~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~ 78 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKA---------------PDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVAL 78 (138)
T ss_pred CCeEEEEEEEecCCCccccCCC---------------CCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCH
Confidence 4789999999999999887654 8999999994 22 23599999999999999999999874
Q ss_pred C---CceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 421 S---AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 421 ~---~~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
. ...|.|+|+|++. .++++||++.|++...-. ...+.|+.++...++++
T Consensus 79 ~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~~~~~~v 131 (138)
T cd08408 79 FQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKESKGQQV 131 (138)
T ss_pred HHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHhCCCCEE
Confidence 3 4689999999987 568999999998874331 34578999987666543
No 117
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.34 E-value=1e-11 Score=146.27 Aligned_cols=145 Identities=14% Similarity=0.063 Sum_probs=108.8
Q ss_pred CceEEEEeecCCcccCCCCCCchhhcccccccCccccchHHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCC
Q 001250 800 SWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGAN 879 (1114)
Q Consensus 800 ~~~vQv~RSi~~~s~~~fP~~p~~~~~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~ 879 (1114)
.+.++++.|+|.+. +|+. .-.+..++|+++|.+||+.|+|+++||+++.. ..
T Consensus 5 ~~~~~~vesiP~~~--~~~~-----------------~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~---------~~ 56 (424)
T PHA02820 5 NTIAVITETIPIGM--QFDK-----------------VYLSTFNFWREILSNTTKTLDISSFYWSLSDE---------VG 56 (424)
T ss_pred ccEEEEEEecCCCC--CCCC-----------------CCCCHHHHHHHHHHhhCcEEEEEeEEEecCcc---------cc
Confidence 46789999999764 3421 02489999999999999999999999996421 01
Q ss_pred CchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeee-cCCCccc
Q 001250 880 NLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFS-PQDYLNF 958 (1114)
Q Consensus 880 N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~-P~~Yl~f 958 (1114)
..++..|..+|++|+ ++||+|+|+++.. +. + ...++.|+++|+++++. +..+
T Consensus 57 ~~~G~~i~~aL~~aA--~rGV~VRIL~d~~-~~-~--------------------~~~~~~L~~aGv~v~~~~~~~~--- 109 (424)
T PHA02820 57 TNFGTMILNEIIQLP--KRGVRVRIAVNKS-NK-P--------------------LKDVELLQMAGVEVRYIDITNI--- 109 (424)
T ss_pred chhHHHHHHHHHHHH--HCCCEEEEEECCC-CC-c--------------------hhhHHHHHhCCCEEEEEecCCC---
Confidence 123457888998875 5789999999852 11 1 12235799999998642 3222
Q ss_pred cccCCceEEeccCCCceeCCCCCCCCcCCCCCCCCcceEEEEEc
Q 001250 959 FCLGNREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQ 1002 (1114)
Q Consensus 959 ~~L~~HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEIav~i~d 1002 (1114)
...++|+|++++|+ +++.|||+||+.||+. .|.|+++.+++
T Consensus 110 ~~~~~HrK~~VIDg-~~~~iGS~Nid~rsl~--~n~E~gv~i~~ 150 (424)
T PHA02820 110 LGGVLHTKFWISDN-THIYLGSANMDWRSLT--QVKELGIAIFN 150 (424)
T ss_pred CcccceeeEEEECC-CEEEEeCCcCChhhhh--hCCceEEEEec
Confidence 23568999999998 7999999999999997 89999998875
No 118
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.4e-12 Score=149.15 Aligned_cols=126 Identities=25% Similarity=0.268 Sum_probs=104.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCE--EEEeeeeecCCCCCeeceEEEEEecCC--
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA--VVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~--~v~RTrVI~nt~NPvWNE~F~f~va~~-- 421 (1114)
+..|.|+|++|++|+.+|..+ ++||||++.+-.. ...+|+|.++++||+|||+|.|.+...
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g---------------~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l 230 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGG---------------TSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL 230 (421)
T ss_pred CCEEEEEEEEecCCCcccCCC---------------CCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence 346999999999999999333 3999999999643 234999999999999999999997655
Q ss_pred -CceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEeccc
Q 001250 422 -AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPME 486 (1114)
Q Consensus 422 -~~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~ 486 (1114)
...|.|.|+|+|+ .++++||++.+++..+.....++.|.+|...........|+|.++++|.|..
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~ 297 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTA 297 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCC
Confidence 4889999999999 5699999999999998876667889999865333333337999999999984
No 119
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=1.6e-12 Score=150.75 Aligned_cols=127 Identities=26% Similarity=0.407 Sum_probs=104.5
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEEE
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f 427 (1114)
.+.++|.+|+||...|-.|+ +||||++.+++.+. ||++|...+||+|||.|+|.|++....|.+
T Consensus 296 kitltvlcaqgl~akdktg~---------------sdpyvt~qv~ktkr-rtrti~~~lnpvw~ekfhfechnstdrikv 359 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGK---------------SDPYVTAQVGKTKR-RTRTIHQELNPVWNEKFHFECHNSTDRIKV 359 (1283)
T ss_pred eeEEeeeecccceecccCCC---------------CCCcEEEeecccch-hhHhhhhccchhhhhheeeeecCCCceeEE
Confidence 68999999999999987775 99999999998875 999999999999999999999999999999
Q ss_pred EEEEecC------------CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCC-CCeEEEEEEEeccccccccc
Q 001250 428 FVKDSDV------------VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKP-GATLTLSIQYTPMERLSFYH 492 (1114)
Q Consensus 428 ~V~D~D~------------~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~-~g~L~L~l~F~p~~~~~~~~ 492 (1114)
.|||.|. ..|||+|++.|.+..|. |+ ++.||.|..+..|.... .-+|||++...-.++...|+
T Consensus 360 rvwded~dlksklrqkl~resddflgqtvievrtls-ge-mdvwynlekrtdksavsgairlhisveikgeekvapyh 435 (1283)
T KOG1011|consen 360 RVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-GE-MDVWYNLEKRTDKSAVSGAIRLHISVEIKGEEKVAPYH 435 (1283)
T ss_pred EEecCcccHHHHHHHHhhhcccccccceeEEEEecc-cc-hhhhcchhhccchhhccceEEEEEEEEEcCccccccce
Confidence 9999885 14899999999999885 54 78999997665554322 23455666666666655443
No 120
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.28 E-value=1.4e-11 Score=118.22 Aligned_cols=87 Identities=31% Similarity=0.531 Sum_probs=73.5
Q ss_pred EEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCE-----EEEeeeeecCCCCCeeceEEEEEecC-----
Q 001250 351 IWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA-----VVGRTFVISNSEDPVWQQHFYVPVAH----- 420 (1114)
Q Consensus 351 VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~-----~v~RTrVI~nt~NPvWNE~F~f~va~----- 420 (1114)
+-+++|++|+.+|.++. +||||+|.+.+. ..+||++++++.||+|| +|.|++..
T Consensus 4 ~~~i~a~~L~~~d~~~~---------------~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~ 67 (110)
T cd04047 4 ELQFSGKKLDKKDFFGK---------------SDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGD 67 (110)
T ss_pred EEEEEeCCCCCCCCCCC---------------CCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCC
Confidence 45679999999998775 899999998543 35799999999999999 79998642
Q ss_pred CCceEEEEEEEecCC-CCccceEEEEeeeeeecC
Q 001250 421 SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG 453 (1114)
Q Consensus 421 ~~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG 453 (1114)
....|.|+|||+|.. ++++||++.+++++|..+
T Consensus 68 ~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 68 YDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred cCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcC
Confidence 257899999999986 589999999999999844
No 121
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.24 E-value=1.6e-11 Score=110.19 Aligned_cols=81 Identities=41% Similarity=0.642 Sum_probs=69.9
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCE--EEEeeeeecCCCCCeeceEEEEEecCC-CceE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA--VVGRTFVISNSEDPVWQQHFYVPVAHS-AAEV 425 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~--~v~RTrVI~nt~NPvWNE~F~f~va~~-~~~L 425 (1114)
|+|+|++|++|+..+..+. .||||+|.+.+. ...+|++++++.+|.|||+|.|++... ...|
T Consensus 1 L~v~I~~a~~L~~~~~~~~---------------~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l 65 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGK---------------PDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSL 65 (85)
T ss_dssp EEEEEEEEESSSSSSTTSS---------------BEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEE
T ss_pred CEEEEEEEECCCCcccCCc---------------ccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccce
Confidence 7999999999998775554 899999999873 236999999999999999999996544 4679
Q ss_pred EEEEEEecCCC-CccceEEE
Q 001250 426 HFFVKDSDVVG-SELIGTVA 444 (1114)
Q Consensus 426 ~f~V~D~D~~g-ddfIGqa~ 444 (1114)
.|+|||++..+ +++||+++
T Consensus 66 ~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 66 SFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEEEETSSSSEEEEEEEE
T ss_pred EEEEEECCCCCCCCEEEEEC
Confidence 99999999977 89999985
No 122
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.21 E-value=1.9e-11 Score=144.93 Aligned_cols=124 Identities=24% Similarity=0.322 Sum_probs=110.0
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEEE
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f 427 (1114)
.|+|+|.||++|+..+..|. .||||+|.++.+.+.||.++.+++.|.|.|+|+|.+...-..|.|
T Consensus 6 sl~vki~E~knL~~~~~~g~---------------~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~f 70 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGM---------------RDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSF 70 (800)
T ss_pred ceeEEEeecccCCCCCCCCC---------------cCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEE
Confidence 48999999999999887665 899999999999999999999999999999999999988889999
Q ss_pred EEEEecCCCCccceEEEEeeeeeecCceeeeeeeec--cCCCCCCCCCCeEEEEEEEecccccc
Q 001250 428 FVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVL--NGSGKPCKPGATLTLSIQYTPMERLS 489 (1114)
Q Consensus 428 ~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl--~~~Gkp~k~~g~L~L~l~F~p~~~~~ 489 (1114)
.|||.|...|+.||++.|.-++|..-...+.||.|. |++.+. .|+|||++++.+..+..
T Consensus 71 Yv~D~d~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEV---QG~v~l~l~~~e~~~~~ 131 (800)
T KOG2059|consen 71 YVWDRDLKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEV---QGKVHLELALTEAIQSS 131 (800)
T ss_pred EEeccccccccccceeeeeHHHHhhCCCCccceeccccCCChhh---ceeEEEEEEeccccCCC
Confidence 999999878999999999999998655678999995 445553 36999999999987754
No 123
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.21 E-value=1.2e-10 Score=120.26 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCch
Q 001250 838 DMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 917 (1114)
Q Consensus 838 e~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~ 917 (1114)
..++.++++++|++|++.|+|+++||.+.. .....+|..+|.+|.+ +|++|+|++........
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~~--rGv~V~il~~~~~~~~~--- 81 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAAR--RGVKVRILVDEWSNTDL--- 81 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHHH--CCCEEEEEEcccccCCc---
Confidence 468999999999999999999999998631 0011379999999875 48999999988764320
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHc---CCceeeecCCCccccccCCceEEeccCCCceeCCCCCCCCcCCCCCCCCc
Q 001250 918 ATQRILFWQHKTMQMMYETIYKALVEV---GLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPERSMEGTRDT 994 (1114)
Q Consensus 918 avq~il~wq~~tm~~~~~si~~~L~~a---Gv~~~~~P~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~RSM~G~rDs 994 (1114)
.....+++.|.++ |++....+..-. +....|.|++++|+ +.+++||+|++.|+|. .|.
T Consensus 82 --------------~~~~~~~~~l~~~~~~~i~~~~~~~~~~--~~~~~H~K~~iiD~-~~~~vGS~N~~~~~~~--~~~ 142 (176)
T cd00138 82 --------------KISSAYLDSLRALLDIGVRVFLIRTDKT--YGGVLHTKLVIVDD-ETAYIGSANLDGRSLT--LNS 142 (176)
T ss_pred --------------hHHHHHHHHHHHhhcCceEEEEEcCCcc--cccceeeeEEEEcC-CEEEEECCcCChhhhh--hhc
Confidence 0122344556654 677654332110 22356999999998 7889999999999998 899
Q ss_pred ceEEEEEcCc
Q 001250 995 EIAMGAYQPE 1004 (1114)
Q Consensus 995 EIav~i~dp~ 1004 (1114)
|+++.+.+++
T Consensus 143 e~~~~~~~~~ 152 (176)
T cd00138 143 EVGVVIYDPA 152 (176)
T ss_pred ceEEEEeChH
Confidence 9999998874
No 124
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.20 E-value=1e-10 Score=135.88 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=98.4
Q ss_pred hHHHHHHHHHhcccceEEEEEEEecceeEEeCCC-CChHHHHHHHHHHHh-ccCCEEEEEEecCCCcccccccccccccc
Q 001250 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS-PALDCTLGELLRSKS-QEGVRVLLLVWDDPTSRSILGYKMDGVMQ 623 (1114)
Q Consensus 546 ~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~-~~~g~rL~dLLk~KA-~eGVrVrlLvwD~~~s~~~lg~k~~gvm~ 623 (1114)
.-++++++|.+||++|+|+.+.|-|. .+.+. ...+..|.++|+++| +|||+||||+ |..+....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~---~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~---------- 282 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPV---IREDDKTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV---------- 282 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccE---EeeCCCCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc----------
Confidence 35899999999999999999866442 23332 123578999998885 9999999996 65432110
Q ss_pred cCcHHHHHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCCC
Q 001250 624 THDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHP 703 (1114)
Q Consensus 624 t~d~~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~ 703 (1114)
......+.|+..|+++.+.-+ + ..+..|+|++|||+ .+||+||.|+....+..
T Consensus 283 -~~~~~~~~L~~~G~~~~i~vr-------i-------~~~~~H~K~~VVD~--------~~a~iGS~N~d~~s~~~---- 335 (369)
T PHA03003 283 -YSMASVKSLQALCVGNDLSVK-------V-------FRIPNNTKLLIVDD--------EFAHITSANFDGTHYLH---- 335 (369)
T ss_pred -hhhhHHHHHHHcCCCCCceEe-------e-------ecCCCCceEEEEcC--------CEEEEeccccCchhhcc----
Confidence 012334556667754211000 0 01238999999999 79999999997754432
Q ss_pred cccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHh
Q 001250 704 LFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKA 759 (1114)
Q Consensus 704 l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPAA~Dl~~~F~qRWn~a 759 (1114)
..|.++ ..++|++|.+++..|+++|+..
T Consensus 336 ---------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 ---------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred ---------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 122332 2578999999999999999853
No 125
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.14 E-value=2e-10 Score=104.10 Aligned_cols=99 Identities=32% Similarity=0.560 Sum_probs=83.6
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecC-CCceEEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH-SAAEVHF 427 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~-~~~~L~f 427 (1114)
|.|.|++|++|....... ..+|||+|.+.+...++|+++.++.||.|||.|.|.+.. ....|.|
T Consensus 1 l~v~i~~~~~l~~~~~~~---------------~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i 65 (102)
T cd00030 1 LRVTVIEARNLPAKDLNG---------------KSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTV 65 (102)
T ss_pred CEEEEEeeeCCCCcCCCC---------------CCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEE
Confidence 579999999998653322 389999999998555699999999999999999999987 5678999
Q ss_pred EEEEecCCC-CccceEEEEeeeeee-cCceeeeeeee
Q 001250 428 FVKDSDVVG-SELIGTVAIPVEQIY-SGGKVEGTYPV 462 (1114)
Q Consensus 428 ~V~D~D~~g-ddfIGqa~IpL~eL~-sG~~id~W~pL 462 (1114)
+|++.+..+ +++||++.+++.++. .+.....|++|
T Consensus 66 ~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 66 EVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 999998865 889999999999998 55666778765
No 126
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.13 E-value=2.9e-10 Score=103.94 Aligned_cols=93 Identities=38% Similarity=0.643 Sum_probs=79.9
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCE--EEEeeeeecCCCCCeeceEEEEEecCC-Cce
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA--VVGRTFVISNSEDPVWQQHFYVPVAHS-AAE 424 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~--~v~RTrVI~nt~NPvWNE~F~f~va~~-~~~ 424 (1114)
+|.|+|++|++|...+..+ ..+|||+|.+.+. ..++|+++.++.||.|||+|.|++... ...
T Consensus 1 ~l~i~i~~~~~l~~~~~~~---------------~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~ 65 (101)
T smart00239 1 TLTVKIISARNLPKKDKKG---------------KSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAE 65 (101)
T ss_pred CeEEEEEEeeCCCCCCCCC---------------CCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCE
Confidence 3789999999998665432 2799999999876 467999999999999999999999888 789
Q ss_pred EEEEEEEecCCC-CccceEEEEeeeeeecCce
Q 001250 425 VHFFVKDSDVVG-SELIGTVAIPVEQIYSGGK 455 (1114)
Q Consensus 425 L~f~V~D~D~~g-ddfIGqa~IpL~eL~sG~~ 455 (1114)
|.|+|+|.+..+ +.+||.+.+++.++..+..
T Consensus 66 l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 66 LEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred EEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 999999998754 8899999999999886653
No 127
>PRK13912 nuclease NucT; Provisional
Probab=99.12 E-value=1.2e-09 Score=114.47 Aligned_cols=139 Identities=20% Similarity=0.241 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCccccccccccccccc
Q 001250 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1114)
Q Consensus 545 ~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t 624 (1114)
.++..|.++|.+|+++|+|+.|.+. ...+.+.|.++++|||+|+||+ |...+...
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y~~~-------------~~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~----------- 87 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIYSFT-------------HKDIAKALKSAAKRGVKISIIY-DYESNHNN----------- 87 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEEEEc-------------hHHHHHHHHHHHHCCCEEEEEE-eCccccCc-----------
Confidence 3578999999999999999988652 2469999999999999999995 76543110
Q ss_pred CcHHHHHHH-hcCCcEEEE-ccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCC
Q 001250 625 HDEETRRVF-KHSSVKVLL-CPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHH 702 (1114)
Q Consensus 625 ~d~~~~~~~-~h~gV~v~l-~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H 702 (1114)
+..+..++ +.+++++.. .+.... . ......+|.|++|||+ .++|+|+.|++...+...
T Consensus 88 -~~~~~~~l~~~~~~~~~~~~~~~~~-~--------~~~~~~~H~K~~viD~--------~~~~iGS~N~t~~s~~~N-- 147 (177)
T PRK13912 88 -DQSTIGYLDKYPNIKVCLLKGLKAK-N--------GKYYGIMHQKVAIIDD--------KIVVLGSANWSKNAFENN-- 147 (177)
T ss_pred -chhHHHHHHhCCCceEEEecCcccc-C--------cccccccceeEEEEcC--------CEEEEeCCCCChhHhccC--
Confidence 11122223 345777664 222100 0 0112468999999999 799999999998655321
Q ss_pred CcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCH-HHHHHHHHHHHHHHHh
Q 001250 703 PLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKA 759 (1114)
Q Consensus 703 ~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGP-AA~Dl~~~F~qRWn~a 759 (1114)
+++.+.++.| .+.++.+.|.+.|...
T Consensus 148 -------------------------------~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 148 -------------------------------YEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred -------------------------------CceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 3467788887 5688999999999864
No 128
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.07 E-value=4.2e-10 Score=135.67 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=110.3
Q ss_pred CeeEEcccCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHh
Q 001250 515 GKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKS 594 (1114)
Q Consensus 515 n~V~ly~Dg~~~~~~~~~~~~~~g~~y~~g~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA 594 (1114)
+.++++.+|.. ......+..+.++|.+||++|+|+..-| + + +..+.++|+.+|
T Consensus 329 ~~~q~~~sgp~---------------~~~~~i~~~~l~~I~~A~~~I~I~tpYf------~-p-----d~~l~~aL~~Aa 381 (509)
T PRK12452 329 GAVQIVASGPS---------------SDDKSIRNTLLAVMGSAKKSIWIATPYF------I-P-----DQETLTLLRLSA 381 (509)
T ss_pred eEEEEEeCCCC---------------chhHHHHHHHHHHHHHhhhEEEEECCcc------C-C-----CHHHHHHHHHHH
Confidence 46788877653 1112468999999999999999986322 2 2 247899999999
Q ss_pred ccCCEEEEEEecCCCcccccccccccccccCcHHHHHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcC
Q 001250 595 QEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDA 674 (1114)
Q Consensus 595 ~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~d~~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~ 674 (1114)
++||+|+||+ +........ ....+...+.+..+||++..... ...|.|++|||+
T Consensus 382 ~rGV~Vrii~-p~~~D~~~~--------~~a~~~~~~~L~~aGv~I~~y~~-----------------~~lHaK~~ivD~ 435 (509)
T PRK12452 382 ISGIDVRILY-PGKSDSIIS--------DQASQSYFTPLLKAGASIYSYKD-----------------GFMHAKIVLVDD 435 (509)
T ss_pred HcCCEEEEEc-CCCCChHHH--------HHHHHHHHHHHHHcCCEEEEecC-----------------CCeeeeEEEECC
Confidence 9999999996 543321110 00112334556778999875321 238999999999
Q ss_pred CCCCCCccEEEEEcccccCCCcCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHH
Q 001250 675 DAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEE 754 (1114)
Q Consensus 675 ~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPAA~Dl~~~F~q 754 (1114)
.+|++|+.|+...-+. ..|.+.++..+++.|.++...|++
T Consensus 436 --------~~a~vGS~Nld~RS~~--------------------------------~n~E~~~~i~~~~~~~~l~~~f~~ 475 (509)
T PRK12452 436 --------KIATIGTANMDVRSFE--------------------------------LNYEIISVLYESETVHDIKRDFED 475 (509)
T ss_pred --------CEEEEeCcccCHhHhh--------------------------------hhhhccEEEECHHHHHHHHHHHHH
Confidence 7999999999774331 245678999999999999999999
Q ss_pred HHHHh
Q 001250 755 RWRKA 759 (1114)
Q Consensus 755 RWn~a 759 (1114)
+|..+
T Consensus 476 d~~~s 480 (509)
T PRK12452 476 DFKHS 480 (509)
T ss_pred HHHhC
Confidence 99875
No 129
>PRK13912 nuclease NucT; Provisional
Probab=99.07 E-value=6.8e-10 Score=116.41 Aligned_cols=125 Identities=12% Similarity=0.040 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchh
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 918 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~a 918 (1114)
.++...++++|++|++.|+|+. |++... +|+++|.+|. ++|++|+||++.+.+... ...
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~~-----------------~i~~aL~~Aa--~RGV~VrIlld~~~~~~~-~~~ 90 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTHK-----------------DIAKALKSAA--KRGVKISIIYDYESNHNN-DQS 90 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEchH-----------------HHHHHHHHHH--HCCCEEEEEEeCccccCc-chh
Confidence 4678999999999999999996 776653 7999999886 579999999998654311 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCceee-ecCC-CccccccCCceEEeccCCCceeCCCCCCCCcCCCCCCCCcce
Q 001250 919 TQRILFWQHKTMQMMYETIYKALVEVGLEGAF-SPQD-YLNFFCLGNREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEI 996 (1114)
Q Consensus 919 vq~il~wq~~tm~~~~~si~~~L~~aGv~~~~-~P~~-Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEI 996 (1114)
++. +...+ .+++... .+.. .........|.|.+++|+ .++++||+|++.+|+. +|.|+
T Consensus 91 ----------~~~-----~l~~~--~~~~~~~~~~~~~~~~~~~~~~H~K~~viD~-~~~~iGS~N~t~~s~~--~N~E~ 150 (177)
T PRK13912 91 ----------TIG-----YLDKY--PNIKVCLLKGLKAKNGKYYGIMHQKVAIIDD-KIVVLGSANWSKNAFE--NNYEV 150 (177)
T ss_pred ----------HHH-----HHHhC--CCceEEEecCccccCcccccccceeEEEEcC-CEEEEeCCCCChhHhc--cCCce
Confidence 000 01111 1222221 1000 000111235999999998 7899999999999998 99999
Q ss_pred EEEEEcCc
Q 001250 997 AMGAYQPE 1004 (1114)
Q Consensus 997 av~i~dp~ 1004 (1114)
.+.+.|++
T Consensus 151 ~lii~d~~ 158 (177)
T PRK13912 151 LLITDDTE 158 (177)
T ss_pred EEEECCHH
Confidence 99998875
No 130
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.02 E-value=8.7e-10 Score=137.24 Aligned_cols=134 Identities=22% Similarity=0.377 Sum_probs=106.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCce
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAE 424 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~ 424 (1114)
.-|.|.|+|.+|++|...|..-. .+.|||+++...+...+||+|++++.||+|||+|++.+..-...
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~-------------~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~ 500 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTIN-------------GTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDP 500 (1227)
T ss_pred eeEEEEEEEeeccCccccccccc-------------CCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCc
Confidence 44899999999999998773211 24899999999999999999999999999999999999988899
Q ss_pred EEEEEEEecC-CCCccceEEEEeeeeeecCcee-eeeeeeccCCCCCCCCCCeEEEEEEEeccccccccccCc
Q 001250 425 VHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKV-EGTYPVLNGSGKPCKPGATLTLSIQYTPMERLSFYHRGV 495 (1114)
Q Consensus 425 L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~i-d~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~~~~~~~~GV 495 (1114)
|.++|||.+. ..|+++|++.|+|..|...... +.-+.++ .+.++. |+|+..++|.|+..+..--.|+
T Consensus 501 L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~k~v---GrL~yDl~ffp~~e~k~~~~~s 569 (1227)
T COG5038 501 LNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNTKNV---GRLTYDLRFFPVIEDKKELKGS 569 (1227)
T ss_pred eeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccCccc---eEEEEeeeeecccCCccccccc
Confidence 9999999554 6799999999999998854332 3355554 445543 6999999999986654333333
No 131
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.97 E-value=1.3e-09 Score=135.68 Aligned_cols=127 Identities=26% Similarity=0.412 Sum_probs=102.6
Q ss_pred ceeeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 341 KVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 341 ~~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
.++--.|.|+|.+..|.||+..|.++. +||||.+.+.++.+.+|+++++++||+|||+|.+++..
T Consensus 1034 emv~nsG~l~I~~~~~~nl~~~d~ng~---------------sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~ 1098 (1227)
T COG5038 1034 EMVENSGYLTIMLRSGENLPSSDENGY---------------SDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLN 1098 (1227)
T ss_pred eeecccCcEEEEEeccCCCcccccCCC---------------CCceEEEEecceecccccchhccCCCCccccceEeeec
Confidence 444457999999999999999998876 89999999999988999999999999999999999874
Q ss_pred C-CceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEec
Q 001250 421 S-AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1114)
Q Consensus 421 ~-~~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p 484 (1114)
- ...+++.|+|||. .+++.||++.|+|+.|..|...+.-.+|- .+. ....+|.++...-|.+
T Consensus 1099 r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ld-gk~-~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1099 RVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLD-GKT-FIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred cccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeecc-Ccc-eEecccEeecceecch
Confidence 4 5789999999998 56899999999999999876555455553 222 2233445555544444
No 132
>smart00149 PLCYc Phospholipase C, catalytic domain (part); domain Y. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=98.90 E-value=1.9e-10 Score=112.17 Aligned_cols=57 Identities=23% Similarity=0.230 Sum_probs=52.2
Q ss_pred CCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEEE
Q 001250 287 SPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1114)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL~ 350 (1114)
.+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|...
T Consensus 42 ~~~~~~~~n~~~l~RvY---P~g~R~dSSNy~P~~~W~----~G~QmVAlN~Qt~d~~m~lN~g~F~ 101 (115)
T smart00149 42 APTDFVRYNQRQLSRVY---PKGTRVDSSNYNPQVFWN----AGCQMVALNFQTPDKPMQLNQGMFR 101 (115)
T ss_pred hHHHHHHhccccceEEC---cCCCcCCCCCCCCHHHHc----CCceEeEeecCCCChHHHHHhhHhh
Confidence 45789999999999 99 999999999999998877 99999999 999999998888654
No 133
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=98.88 E-value=7e-09 Score=101.12 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=75.7
Q ss_pred HHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchhhHHHHHH
Q 001250 846 VKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFW 925 (1114)
Q Consensus 846 l~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~avq~il~w 925 (1114)
+++|++|++.|+|..+||... +|+.+|.++. .+|++|.||+-...+...
T Consensus 2 ~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~~--~~gv~v~ii~~~~~~~~~----------- 50 (126)
T PF13091_consen 2 IDLIKSAQKSIWIASPYITDP------------------DIIKALLDAA--KRGVKVRIIVDSNQDDSE----------- 50 (126)
T ss_dssp HHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHHH--HTT-EEEEEEECGGGHHC-----------
T ss_pred HHHHhccCCEEEEEEEecCcH------------------HHHHHHHHHH--HCCCeEEEEECCCccccc-----------
Confidence 689999999999999999433 6888888754 567888888876432100
Q ss_pred HHHHH-HHHHHHHHHHHHHcCCceeeecCCCccccccCCceEEeccCCCceeCCCCCCCCcCCCCCCCCcceEEEEEcCc
Q 001250 926 QHKTM-QMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus 926 q~~tm-~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEIav~i~dp~ 1004 (1114)
.+ ......+.+.+.+.|++++ .. .|+|..++|+ .++++||+|++.+||. +|.|+++.+.+++
T Consensus 51 ---~~~~~~~~~~~~~~~~~~i~v~----~~-------~H~K~~i~d~-~~~iiGS~N~t~~~~~--~n~E~~~~~~~~~ 113 (126)
T PF13091_consen 51 ---AINLASLKELRELLKNAGIEVR----NR-------LHAKFYIIDD-KVAIIGSANLTSSSFR--RNYELGVIIDDPE 113 (126)
T ss_dssp ---CCSHHHHHHHHHHHHHTTHCEE----S--------B--EEEEETT-TEEEEES--CSCCCSC--TSEEEEEEEECHH
T ss_pred ---hhhhHHHHHHHhhhccceEEEe----cC-------CCcceEEecC-ccEEEcCCCCCcchhc--CCcceEEEEECHH
Confidence 00 0112334444577888764 23 3999999997 6889999999999997 9999999998774
No 134
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=98.88 E-value=1.4e-08 Score=99.06 Aligned_cols=125 Identities=22% Similarity=0.400 Sum_probs=83.7
Q ss_pred HHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccccccccCcHHH
Q 001250 550 ICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDEET 629 (1114)
Q Consensus 550 l~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~d~~~ 629 (1114)
|.++|++|+++|+|+.+.| . ...+.+.|..++++||+|+|++.+......... .......
T Consensus 1 l~~~i~~A~~~i~i~~~~~-------~------~~~i~~~l~~~~~~gv~v~ii~~~~~~~~~~~~-------~~~~~~~ 60 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYI-------T------DPDIIKALLDAAKRGVKVRIIVDSNQDDSEAIN-------LASLKEL 60 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS--------------SCHHHHHHHHHHHTT-EEEEEEECGGGHHCCCS-------HHHHHHH
T ss_pred CHHHHhccCCEEEEEEEec-------C------cHHHHHHHHHHHHCCCeEEEEECCCccccchhh-------hHHHHHH
Confidence 5789999999999998754 1 235788888899999999999744322000000 0011233
Q ss_pred HHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCCCcccccc
Q 001250 630 RRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQ 709 (1114)
Q Consensus 630 ~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l~~~l~ 709 (1114)
.+.++..|+++. .+.|.|++|||+ .++++|+.|++...|..
T Consensus 61 ~~~~~~~~i~v~---------------------~~~H~K~~i~d~--------~~~iiGS~N~t~~~~~~---------- 101 (126)
T PF13091_consen 61 RELLKNAGIEVR---------------------NRLHAKFYIIDD--------KVAIIGSANLTSSSFRR---------- 101 (126)
T ss_dssp HHHHHHTTHCEE---------------------S-B--EEEEETT--------TEEEEES--CSCCCSCT----------
T ss_pred HhhhccceEEEe---------------------cCCCcceEEecC--------ccEEEcCCCCCcchhcC----------
Confidence 444466777654 258999999998 69999999998876521
Q ss_pred cccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHH-HHHHHHHHHHHH
Q 001250 710 TLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPA-AYDVLTNFEERW 756 (1114)
Q Consensus 710 ~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPA-A~Dl~~~F~qRW 756 (1114)
.+++.+.++++. +.++.+.|.+.|
T Consensus 102 -----------------------n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 102 -----------------------NYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp -----------------------SEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred -----------------------CcceEEEEECHHHHHHHHHHHhccC
Confidence 268999999996 999999999889
No 135
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.2e-09 Score=125.25 Aligned_cols=108 Identities=29% Similarity=0.461 Sum_probs=88.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecCC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
+|.|+|.|++|++|+.+|..+. +||||++.+-. ...+||.+.+++.||+|||+|.|.|...
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~---------------~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~ 361 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGL---------------SDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPE 361 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCC---------------CCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHH
Confidence 5899999999999999987664 89999999842 2335999999999999999999987633
Q ss_pred ---CceEEEEEEEecCCC-CccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 422 ---AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 422 ---~~~L~f~V~D~D~~g-ddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
...|.|+|||+|.++ +++||.+.|.... .|.....|..+++.-++++
T Consensus 362 ~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv 412 (421)
T KOG1028|consen 362 QLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPV 412 (421)
T ss_pred HhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCce
Confidence 357999999999965 6799998887665 5655678998887666655
No 136
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=98.85 E-value=4.1e-10 Score=122.72 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=53.5
Q ss_pred CCCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEEE
Q 001250 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1114)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL~ 350 (1114)
...+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|..+
T Consensus 191 ~~~~~~~v~~N~~~l~RvY---P~G~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~lN~g~F~ 252 (254)
T cd08633 191 QQKPAQYLRFNQRQLSRIY---PSSYRVDSSNYNPQPFWN----AGCQMVALNYQSEGRMLQLNRAKFS 252 (254)
T ss_pred HHCHHHHHHhhhhcccccC---CCCCCCCCCCCCchHHhc----CCCeEEEecccCCCchhHhhccccc
Confidence 3466789999999999 99 999999999999997777 99999999 999999999988653
No 137
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=98.85 E-value=4.1e-10 Score=123.44 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=53.0
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL~ 350 (1114)
..+.+|+.||+++|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|..+
T Consensus 196 ~~~~~~v~~n~~~l~RiY---PkgtRidSSNynP~~~W~----~G~QmVALN~QT~d~~M~LN~G~F~ 256 (258)
T cd08630 196 EAGNSFVRHNARQLTRVY---PLGLRMNSANYSPQEMWN----SGCQLVALNFQTPGYEMDLNAGRFL 256 (258)
T ss_pred HhHHHHHHhhhcccceeC---CCCCcCCCCCCCcHHHhc----CCCeEEEecccCCChhhhhhccccc
Confidence 355789999999999 99 999999999999997777 99999999 999999999998653
No 138
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=98.85 E-value=3.5e-10 Score=123.79 Aligned_cols=58 Identities=21% Similarity=0.097 Sum_probs=53.1
Q ss_pred CCCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEE
Q 001250 285 LSSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1114)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL 349 (1114)
...+.+|+.||.++|+ +| |+|.|+|||||+|+.+|. +||||||+ |+.++.++|.+|..
T Consensus 194 ~~~~~~~v~~n~r~l~RvY---P~GtRidSSNynP~~~W~----~G~QmVALN~Qt~d~~M~LN~G~F 254 (257)
T cd08595 194 KSSGADFVGHTQRFITRIY---PKGTRASSSNYNPQEFWN----VGCQMVALNFQTLGAPMDLQNGKF 254 (257)
T ss_pred HHhHHHHHHHhhcCCceeC---cCCCCCCCCCCCcHHHHc----CCCeEEEecccCCChhhhhhcCcc
Confidence 3456789999999999 99 999999999999997777 99999999 99999999999865
No 139
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.83 E-value=7.8e-09 Score=119.61 Aligned_cols=134 Identities=22% Similarity=0.435 Sum_probs=106.3
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeec-eEEEEEecCC--
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQ-QHFYVPVAHS-- 421 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWN-E~F~f~va~~-- 421 (1114)
|-|.|.|+|.-|++||-||..+. +.|.||.|++++... ||-|..+++||.|| +-|.|.|.+.
T Consensus 1 mpgkl~vki~a~r~lpvmdkasd--------------~tdafveik~~n~t~-ktdvf~kslnp~wnsdwfkfevddadl 65 (1169)
T KOG1031|consen 1 MPGKLGVKIKAARHLPVMDKASD--------------LTDAFVEIKFANTTF-KTDVFLKSLNPQWNSDWFKFEVDDADL 65 (1169)
T ss_pred CCCcceeEEEeccCCcccccccc--------------cchheeEEEecccce-ehhhhhhhcCCcccccceEEecChhhh
Confidence 45889999999999999997654 489999999999986 99999999999999 5688988755
Q ss_pred -CceEEEEEEEecC-CCCccceEEEEeeeeee----------cCceeeeeeeeccCCCCCCCCCCeEEEEEE---Eeccc
Q 001250 422 -AAEVHFFVKDSDV-VGSELIGTVAIPVEQIY----------SGGKVEGTYPVLNGSGKPCKPGATLTLSIQ---YTPME 486 (1114)
Q Consensus 422 -~~~L~f~V~D~D~-~gddfIGqa~IpL~eL~----------sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~---F~p~~ 486 (1114)
.+.|.+++.|+|. +.+|-||++.|.+..|. .|..+.+|||+++.-.. -.|+|.+-++ |.+..
T Consensus 66 qdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg---irgeinvivkvdlfndln 142 (1169)
T KOG1031|consen 66 QDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG---IRGEINVIVKVDLFNDLN 142 (1169)
T ss_pred ccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc---ccceeEEEEEEeehhhhh
Confidence 4789999999998 66999999999998876 24678999999975322 2357777665 34444
Q ss_pred cccccccCcC
Q 001250 487 RLSFYHRGVG 496 (1114)
Q Consensus 487 ~~~~~~~GV~ 496 (1114)
+.+.-+.||.
T Consensus 143 kf~qsscgvk 152 (1169)
T KOG1031|consen 143 KFPQSSCGVK 152 (1169)
T ss_pred hcccccccce
Confidence 5554445553
No 140
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.83 E-value=3.8e-10 Score=133.35 Aligned_cols=143 Identities=22% Similarity=0.328 Sum_probs=110.1
Q ss_pred CCCCCCceeccCCCCCcceeeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC-----------
Q 001250 324 SFNGQNMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----------- 392 (1114)
Q Consensus 324 ~~~~~g~QmVa~q~~~~~~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~----------- 392 (1114)
..|.+++--|. |-...... |.|.+.+|++|.++|.+|. ||||++..+-
T Consensus 97 ~eh~~~~e~v~-~~k~P~~~-----l~is~~~ak~l~akd~ngf---------------SdP~~m~g~~p~~~~~~~pra 155 (1103)
T KOG1328|consen 97 AEHNALMEKVK-QNKPPSVL-----LNISLLEAKDLIAKDVNGF---------------SDPFAMMGVVPGTRKENSPRA 155 (1103)
T ss_pred hHhhhcccccc-CCCCCcHH-----HHHHHHHhcCccccCCCCC---------------CChhhhhccccccccccChhh
Confidence 45655666665 32222232 7889999999999999886 8999998871
Q ss_pred ---------------C----EEEEeeeeecCCCCCeeceEEEEEecCCC-ceEEEEEEEecCC-----------------
Q 001250 393 ---------------G----AVVGRTFVISNSEDPVWQQHFYVPVAHSA-AEVHFFVKDSDVV----------------- 435 (1114)
Q Consensus 393 ---------------g----~~v~RTrVI~nt~NPvWNE~F~f~va~~~-~~L~f~V~D~D~~----------------- 435 (1114)
| +-++-|.|.++|+||+|+|+|.|.+.+-. ..+++.+||+|..
T Consensus 156 ~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~k 235 (1103)
T KOG1328|consen 156 LHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFK 235 (1103)
T ss_pred hhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcch
Confidence 1 12346888888999999999999998764 7899999998851
Q ss_pred --------------------CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEecccccc
Q 001250 436 --------------------GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLS 489 (1114)
Q Consensus 436 --------------------gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~~~~ 489 (1114)
.|||+|.+.|||.+|... .++.||.|..++.+.. -.|.++|+++....++..
T Consensus 236 G~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~-Gld~WFkLepRS~~S~-VqG~~~LklwLsT~e~~~ 307 (1103)
T KOG1328|consen 236 GIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD-GLDQWFKLEPRSDKSK-VQGQVKLKLWLSTKEEGR 307 (1103)
T ss_pred hHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc-hHHHHhccCccccccc-ccceEEEEEEEeeecccc
Confidence 178999999999999853 4789999987776654 347999999998876654
No 141
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=98.83 E-value=5.5e-10 Score=122.78 Aligned_cols=58 Identities=26% Similarity=0.203 Sum_probs=53.0
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL~ 350 (1114)
..+.+|+.||+++|+ +| |+|.|||||||+|..+|. +||||||+ |+.++.++|.+|...
T Consensus 198 ~~~~~~v~~n~~~l~RvY---P~G~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~M~lN~g~F~ 258 (260)
T cd08597 198 EFPEDFVNYNKKFLSRVY---PSPMRVDSSNYNPQDFWN----CGCQIVAMNYQTPGLMMDLNTGKFL 258 (260)
T ss_pred HCHHHHHHHhhhcCceeC---cCCCCCCCCCCCchHHhc----CCCeEeeecccCCChhhhhhccccc
Confidence 356789999999999 99 999999999999997777 99999999 999999999988653
No 142
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=98.83 E-value=5.5e-10 Score=120.50 Aligned_cols=57 Identities=19% Similarity=0.086 Sum_probs=52.9
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL 349 (1114)
..+.+|+.||++.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.+..++|.+|..
T Consensus 167 ~~~~~~v~~n~~~l~RvY---P~g~RvdSSNy~P~~~W~----~G~QmVAlN~Qt~d~~m~lN~g~F 226 (229)
T cd08592 167 QKGKIFLKYNRRQLSRVY---PKGQRVDSSNYDPVPMWN----CGSQMVALNFQTPDKPMQLNQALF 226 (229)
T ss_pred hhHHHHHHhhhhcceeeC---CCCCcCcCCCCCchHHhc----CCceEEEeeccCCChhHHhhcccc
Confidence 577889999999999 99 999999999999998887 99999999 99999999888864
No 143
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=98.83 E-value=5.6e-10 Score=122.12 Aligned_cols=57 Identities=23% Similarity=0.106 Sum_probs=52.4
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL 349 (1114)
..+.+|+.||.++|+ +| |+|.|||||||+|+.+|. .||||||+ |+.++.++|.+|..
T Consensus 196 ~~~~~~v~~n~~~l~RiY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 255 (258)
T cd08629 196 ESGNGFVRHNVSCLSRIY---PAGWRTDSSNYSPVEMWN----GGCQIVALNFQTPGPEMDVYLGCF 255 (258)
T ss_pred HhHHHHHHhchhccceeC---CCCCCCCCCCCCchHHhc----CCceEEEecccCCChhHHhhhchh
Confidence 356789999999999 99 999999999999997777 99999999 99999999998864
No 144
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=98.83 E-value=7.3e-10 Score=119.20 Aligned_cols=56 Identities=18% Similarity=0.067 Sum_probs=51.6
Q ss_pred CCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEE
Q 001250 287 SPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1114)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL 349 (1114)
.+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|..|..
T Consensus 168 ~~~~fv~~n~~~l~RiY---P~G~RidSSNy~P~~~W~----~G~QmVALN~Qt~d~~M~LN~G~F 226 (229)
T cd08627 168 KGKKFLQYNRRQLSRIY---PKGQRLDSSNYDPLPMWI----CGSQLVALNFQTPDKPMQMNQALF 226 (229)
T ss_pred hHHHHHHhcccceeEeC---CCCCcCcCCCCCchhHhc----cCcEEEEeeccCCCcchhhhcCcc
Confidence 45689999999999 99 999999999999997777 99999999 99999999888864
No 145
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=98.82 E-value=5e-10 Score=122.34 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=52.9
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL~ 350 (1114)
..+.+|+.||+++|+ +| |+|.|||||||+|+.+|. +||||||+ |+.++.++|.+|...
T Consensus 192 ~~~~~lv~~n~~~l~RiY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F~ 252 (254)
T cd08596 192 RYPQKLVQHTRCQLLRTY---PAATRIDSSNPNPLIFWL----HGLQLVALNYQTDDLPMHLNAAMFE 252 (254)
T ss_pred HCHHHHHHhhhhcceeec---cCCCcCCCCCCCcHHHHh----CCCeEEeecccCCChHHHhhhchhc
Confidence 456789999999999 99 999999999999997777 99999999 999999999988643
No 146
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.82 E-value=7.1e-10 Score=121.93 Aligned_cols=58 Identities=26% Similarity=0.257 Sum_probs=52.6
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL~ 350 (1114)
..+.+|+.||.++|+ +| |+|.|||||||+|..+|. .||||||+ |+.++.++|-+|...
T Consensus 196 ~~~~~~v~~N~~~l~RvY---P~G~RvdSSNydP~~~W~----~G~QmVALN~QT~D~~M~LN~G~F~ 256 (258)
T cd08625 196 KSPMEFVEYNKKQLSRIY---PKGTRVDSSNYMPQLFWN----VGCQMVALNFQTLDLAMQLNMGVFE 256 (258)
T ss_pred hCHHHHHHhhhcceeeec---cCCCcCcCCCCCChhHhc----CcceEEEeecCCCCcchhhhccccc
Confidence 355779999999999 99 999999999999998888 99999999 999999998888643
No 147
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=98.82 E-value=4.5e-10 Score=122.83 Aligned_cols=57 Identities=19% Similarity=0.143 Sum_probs=52.3
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL 349 (1114)
..+.+|+.||.++|+ +| |+|.|||||||+|..+|+ .||||||+ |+.++.++|.+|..
T Consensus 192 ~~~~~~v~~N~~~l~RvY---P~G~RvdSSNynP~~~W~----~G~QmVALN~QT~d~~M~LN~G~F 251 (254)
T cd08628 192 QKPVQLLKYNRKGLTRVY---PKGQRVDSSNYDPFRLWL----CGSQMVALNFQTADKYMQLNHALF 251 (254)
T ss_pred hHHHHHHHHhHhhhhhhC---CCCCcCCCCCCCchHHhc----CCCeEEEeeccCCChhhhhhhhhc
Confidence 345789999999999 99 999999999999998887 99999999 99999999888864
No 148
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.82 E-value=6.5e-10 Score=121.92 Aligned_cols=57 Identities=19% Similarity=0.136 Sum_probs=52.1
Q ss_pred CCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEEE
Q 001250 287 SPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1114)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL~ 350 (1114)
.+.+|+.||.++|+ +| |+|.|||||||+|..+|+ .||||||+ |+.++.++|..|..+
T Consensus 200 ~~~~fv~~N~~~l~RiY---P~G~RvdSSNynP~~~W~----~G~QmVALN~QT~D~~M~LN~G~F~ 259 (261)
T cd08624 200 ASVQFVEYNKRQMSRIY---PKGTRMDSSNYMPQMFWN----VGCQMVALNFQTMDLPMQQNMALFE 259 (261)
T ss_pred hHHHHHHhchhheeeeC---CCCCcccCcCCCchHHhc----CCCeEEEecccCCChhhhhhccccc
Confidence 44679999999999 99 999999999999998888 99999999 999999998888654
No 149
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=98.80 E-value=7.6e-10 Score=121.20 Aligned_cols=58 Identities=21% Similarity=0.079 Sum_probs=52.8
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL~ 350 (1114)
..+.+|+.||.+.|+ +| |+|.|||||||+|+.+|. +||||||+ |+.++.++|.+|...
T Consensus 196 ~~~~~~v~~n~~~l~RiY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F~ 256 (258)
T cd08631 196 EAGNEFVQHNTWQLSRVY---PSGLRTDSSNYNPQEMWN----AGCQMVALNFQTAGLEMDLNDGLFR 256 (258)
T ss_pred hchHHHHHHHHhcCceeC---cCCCCCCCCCCCcHHHHh----CCCeEeeecccCCChhHHhhcchhc
Confidence 355789999999999 99 999999999999997777 99999999 999999999988643
No 150
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.79 E-value=6.6e-10 Score=121.63 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=52.8
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL~ 350 (1114)
..+.+|+.||+++|+ +| |+|.|||||||+|+.+|. .||||||+ |+.++.++|.+|..+
T Consensus 195 ~~~~~~v~~n~~~l~RiY---P~G~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F~ 255 (257)
T cd08626 195 TSAIEFVNYNKRQMSRIY---PKGTRVDSSNYMPQIFWN----AGCQMVSLNFQTPDLGMQLNQGKFE 255 (257)
T ss_pred HHHHHHHHHhhhcCceeC---cCCCCCcCCCCCcHHHhc----CCCeEEEecccCCChhHHhhhcccc
Confidence 345789999999999 99 999999999999997777 99999999 999999999998654
No 151
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=98.79 E-value=7.3e-10 Score=120.62 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=53.1
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL~ 350 (1114)
..+.+|+.||.+.|+ +| |+|.|+|||||+|+.+|. .||||||+ |+.++.++|.+|...
T Consensus 191 ~~~~~~v~~n~~~l~RvY---P~g~RidSSNy~P~~~W~----~G~QmVAlN~Qt~d~~m~LN~g~F~ 251 (253)
T cd08632 191 QKAEQFMTYNQKQLTRIY---PSAYRIDSSNFNPLPYWN----VGCQLVALNYQSEGRMMQLNRAKFM 251 (253)
T ss_pred HhHHHHHHHhhhccceeC---CCCCcCcCCCCCcHHHhc----CCCeEEEecccCCChhHHhhccccc
Confidence 356789999999999 99 999999999999997777 99999999 999999999998654
No 152
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.79 E-value=2.2e-08 Score=100.51 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=76.7
Q ss_pred EEEEEEEeeCCCCCCC--CCcccccccccccCCCCCCCcEEEEEECC--EEEEeeeeecCCCC--CeeceEEEEEecCC-
Q 001250 349 LDIWIYSAKNLPNMDM--FHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSED--PVWQQHFYVPVAHS- 421 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~--~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~~v~RTrVI~nt~N--PvWNE~F~f~va~~- 421 (1114)
|+|.|.+|++++..+. .|. ..+||||++.+.+ ...++|.|..+++| |+||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~-------------~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~ 68 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGE-------------KMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLP 68 (133)
T ss_pred EEEEEEECcCCcccccccCCc-------------cccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCC
Confidence 8999999999775543 221 1389999999987 45569999999999 99999999987651
Q ss_pred -----------------------CceEEEEEEEecCC-CCccceEEEEeeeeeecCc
Q 001250 422 -----------------------AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGG 454 (1114)
Q Consensus 422 -----------------------~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~ 454 (1114)
...|.|+|||+|.+ .|++||++.|++..+..+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 69 AEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 26799999999984 5999999999999998765
No 153
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=98.79 E-value=9.6e-10 Score=118.27 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=52.4
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL 349 (1114)
..+.+|+.||.++|+ +| |+|.|||||||+|..+|. .||||||+ |+.++.++|.+|..
T Consensus 165 ~~~~~~v~~n~~~l~RiY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~g~F 224 (227)
T cd08594 165 QKAAQFLRFNQRQLSRIY---PSAYRIDSSNFNPQPYWN----AGCQLVALNYQTEGRMLQLNRAKF 224 (227)
T ss_pred HHHHHHHHhcccccceeC---CCCCcCcCCCCCchHHhc----CCceEEEecccCCChhhHhhcccc
Confidence 356789999999999 99 999999999999998887 99999999 99999999888864
No 154
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.77 E-value=3.4e-06 Score=97.10 Aligned_cols=337 Identities=17% Similarity=0.121 Sum_probs=182.8
Q ss_pred hHHHHHHHHHhcccceEEEEEEEecc-eeEEeCC-CCChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccccccc
Q 001250 546 CWYDICNAISQAQRLIYITGWSVWHK-VKLVRDA-SPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQ 623 (1114)
Q Consensus 546 ~f~al~~AI~~Ak~~I~I~gW~~~p~-i~L~Rdd-~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~ 623 (1114)
++++.++.|..|+++|+|..+-.+=. ..+--++ ....|..+..+|.+++..||.|||..--..+. .
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~dsSt~~G~~vy~~L~~~~~~gIsiriA~~~p~~~-~----------- 140 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVVDSSTQYGEQVYNTLLALAKSGVKIRIAQSYPSGG-P----------- 140 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccCCCcchHHHHHHHHHHHhccCCeEEEEEeecCCCC-C-----------
Confidence 46899999999999999976533211 1111111 12357899999999999999999996322221 1
Q ss_pred cCcHHHHHHHhcCC-cEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCC
Q 001250 624 THDEETRRVFKHSS-VKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHH 702 (1114)
Q Consensus 624 t~d~~~~~~~~h~g-V~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H 702 (1114)
+......+...| ++++-.... .|. + -.--|-|..|||+ .--|+||.|+.- |=-|+-
T Consensus 141 --~~~d~~~Le~~Gaa~vr~id~~-----~l~-----g-~GvlHtKf~vvD~--------khfylGSaNfDW-rSlTqv- 197 (456)
T KOG3603|consen 141 --PNADLQVLESLGLAQVRSIDMN-----RLT-----G-GGVLHTKFWVVDI--------KHFYLGSANFDW-RSLTQV- 197 (456)
T ss_pred --CcccHHHHHhCCCceEEeeccc-----ccc-----c-CceEEEEEEEEec--------ceEEEeccccch-hhccce-
Confidence 111123445555 666532211 111 1 2457999999999 688999999965 222210
Q ss_pred CcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeC--HHHHHHHHHHHHHHHHhcCCCCccccCCCchhhhhhcc
Q 001250 703 PLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDG--PAAYDVLTNFEERWRKASKPHGIKKLKSGDDALLRIER 780 (1114)
Q Consensus 703 ~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeG--PAA~Dl~~~F~qRWn~a~~~~~~~~L~~~~~~ll~~~~ 780 (1114)
-.+.+.+.- -.|.||...|++.|..-.....+.+.....-.......
T Consensus 198 -------------------------------kElGv~v~NCpclakDL~kiFe~yW~lg~~~s~~p~~wp~~~st~~N~~ 246 (456)
T KOG3603|consen 198 -------------------------------KELGVVVRNCPCLAKDLKKIFERYWYLGNAKSLIPKKWPNCYSTHYNKP 246 (456)
T ss_pred -------------------------------eEeeeEEecChhHHHHHHHHHHHHhcCCCCCccCCCCCccccccccccc
Confidence 123333322 27999999999999854332100000000000000000
Q ss_pred CCCccCCCCCCCCcCCCCCCceEEEEeecCCcccCCCCCCchhhcccccccCccccchHHHHHHHHHHHHhcccEEEEE-
Q 001250 781 IPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIE- 859 (1114)
Q Consensus 781 ~p~~~~~~~~p~~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~~~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~fIYIE- 859 (1114)
.|.. . ..+......++..|-+ .| . .+|+ .-=.+|.++.|..|+.||||.
T Consensus 247 ~p~~--------~-~~dg~~~~~y~saSP~-----~~--~---------~~gr-----t~DL~ail~~i~~A~~fv~isV 296 (456)
T KOG3603|consen 247 LPMK--------I-AVDGTPATPYISASPP-----PL--N---------PSGR-----TWDLEAILNTIDEAQKFVYISV 296 (456)
T ss_pred Ccce--------e-ecCCCCcceEEccCCC-----CC--C---------CCCC-----chhHHHHHHHHHHHhhheeeee
Confidence 0000 0 0001112223222211 11 1 1221 123478999999999999996
Q ss_pred eeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 001250 860 NQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYK 939 (1114)
Q Consensus 860 NQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~avq~il~wq~~tm~~~~~si~~ 939 (1114)
-+||=+..+..+ +.-- +|=.+|.+|.- +||+|++++-.|....+ .+-.+|+ . -+.+-.
T Consensus 297 MdY~Ps~~y~k~--------~~fw-~iDdaiR~aa~--RgV~vR~lvs~~~~~~~---~m~~~L~----S----Lq~l~~ 354 (456)
T KOG3603|consen 297 MDYFPSTIYSKN--------HRFW-EIDDAIRRAAV--RGVKVRLLVSCWKHSEP---SMFRFLR----S----LQDLSD 354 (456)
T ss_pred hhccchheeecC--------cchh-hhhHHHHHHhh--cceEEEEEEeccCCCCc---hHHHHHH----H----HHHhcC
Confidence 678766543211 1111 56677777653 89999999999886543 1111111 1 111122
Q ss_pred HHHHcCCceee--ecCC-Cccc-cccCCceEEeccCCCceeCCCCCCCCcCCCCCCCCcceEEEEEcCc
Q 001250 940 ALVEVGLEGAF--SPQD-YLNF-FCLGNREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus 940 ~L~~aGv~~~~--~P~~-Yl~f-~~L~~HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEIav~i~dp~ 1004 (1114)
.+....|++.+ -|.+ +..+ |.-.+|.|.|+-+. .+.||++|+-.-=+.+ -+-++|++.++.
T Consensus 355 ~~~~~~iqvk~f~VP~~~~~~ip~~Rv~HnKymVTe~--aayIGTSNws~dYf~~--TaG~~ivv~q~~ 419 (456)
T KOG3603|consen 355 PLENGSIQVKFFIVPQTNIEKIPFARVNHNKYMVTES--AAYIGTSNWSGDYFTS--TAGTAIVVRQTP 419 (456)
T ss_pred ccccCceEEEEEEeCCCccccCchhhhccceeEEeec--ceeeeccCCCccceec--cCceEEEEecCC
Confidence 22222344432 2432 1211 34468999999875 6799999998877752 345788887653
No 155
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=98.76 E-value=1.3e-09 Score=119.40 Aligned_cols=57 Identities=25% Similarity=0.224 Sum_probs=52.0
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL 349 (1114)
..+.+|+.||+++|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|..
T Consensus 196 ~~~~~~v~~N~~~l~RvY---P~G~RvdSSNy~P~~~W~----~G~QmVALN~QT~d~~M~LN~G~F 255 (258)
T cd08623 196 KSPVEFVEYNKMQLSRIY---PKGTRVDSSNYMPQLFWN----AGCQMVALNFQTVDLSMQINMGMY 255 (258)
T ss_pred hCHHHHHHHhhhhceeec---cCCCcccCCCCCChhhhc----CCceEEEeecCCCCcchhhhcccc
Confidence 345679999999999 99 999999999999998888 99999999 99999999888864
No 156
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=98.73 E-value=1.8e-09 Score=116.75 Aligned_cols=58 Identities=17% Similarity=0.097 Sum_probs=53.3
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL~ 350 (1114)
..+.+|+.||.++|+ +| |+|.|+|||||+|..+|. +||||||+ |+.++.++|.+|...
T Consensus 166 ~~~~~~v~~n~~~l~RvY---P~g~RvdSSNy~P~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F~ 226 (228)
T cd08599 166 EHPTDLIEFTQKNLLRVY---PAGLRITSSNYDPMLAWM----HGAQMVALNMQGYDRPLWLNRGKFR 226 (228)
T ss_pred hcHHHHHHHhhccceeec---cCCcccCCCCCCChHHhc----CcceEeeeecCCCChhhhhhccccc
Confidence 567889999999999 99 999999999999998877 99999999 999999999888653
No 157
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.72 E-value=2.7e-09 Score=78.76 Aligned_cols=27 Identities=63% Similarity=1.014 Sum_probs=18.8
Q ss_pred ccccccceEEEcCCCCCCCccEEEEEcccccCCCc
Q 001250 662 IYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGR 696 (1114)
Q Consensus 662 ~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgR 696 (1114)
.++||||++|||+ .+||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~--------~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDD--------RVAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETT--------TEEEEE---SSHHH
T ss_pred CcceeeEEEEEcC--------CEEEECceecCCCC
Confidence 4799999999999 79999999999875
No 158
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=98.72 E-value=1.6e-09 Score=118.60 Aligned_cols=58 Identities=26% Similarity=0.309 Sum_probs=52.6
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL~ 350 (1114)
..+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|...
T Consensus 195 ~~~~~~v~~n~~~l~RvY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~lN~g~F~ 255 (257)
T cd08591 195 KSPIEFVNYNKRQLSRIY---PKGTRVDSSNYMPQIFWN----AGCQMVALNFQTPDLPMQLNQGKFE 255 (257)
T ss_pred HHHHHHHHHhhhcCceeC---cCCCcCcCCCCCcHHHhc----CCCeEEEecCcCCChhHHhhccccc
Confidence 345789999999999 99 999999999999997777 99999999 999999999888653
No 159
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=98.72 E-value=1.5e-09 Score=117.35 Aligned_cols=56 Identities=16% Similarity=0.049 Sum_probs=52.1
Q ss_pred CCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEE
Q 001250 287 SPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1114)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL 349 (1114)
.+.+|+.||.++|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|..
T Consensus 170 ~~~~lv~~n~~~l~RvY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~G~F 228 (231)
T cd08598 170 KRAALDKHNRRHLMRVY---PSGTRISSSNFNPLPFWR----AGVQMVALNWQTYDLGMQLNEAMF 228 (231)
T ss_pred HHHHHHHHhhhceeeeC---CCCCcCCCCCCCcHHHHh----CCCeEEEecccCCChhhhhhcccc
Confidence 56789999999999 99 999999999999997777 99999999 99999999988864
No 160
>PRK11263 cardiolipin synthase 2; Provisional
Probab=98.72 E-value=6.4e-08 Score=114.07 Aligned_cols=129 Identities=12% Similarity=0.128 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchh
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 918 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~a 918 (1114)
.++..+++++|++||++|+||+-+|..+. ++.+|.++|.+|. ++||+|+|++.......
T Consensus 17 ~e~~~~l~~~I~~Ak~~I~i~~yi~~~d~--------------~g~~l~~aL~~aa--~rGV~Vril~D~~gs~~----- 75 (411)
T PRK11263 17 EQYYPRVFEAIAAAQEEILLETFILFEDK--------------VGKQLHAALLAAA--QRGVKVEVLVDGYGSPD----- 75 (411)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEEEEecCc--------------hHHHHHHHHHHHH--HCCCEEEEEEECCCCCC-----
Confidence 57999999999999999999998887653 3457889998875 57899999998652110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCceee-ecCC-Cccc-cc--cCCceEEeccCCCceeCCCCCCCCcCCCC--CC
Q 001250 919 TQRILFWQHKTMQMMYETIYKALVEVGLEGAF-SPQD-YLNF-FC--LGNREVIDQTDTSLSGNPTAPNTPERSME--GT 991 (1114)
Q Consensus 919 vq~il~wq~~tm~~~~~si~~~L~~aGv~~~~-~P~~-Yl~f-~~--L~~HsK~~ivDd~~~~~IGSANiN~RSM~--G~ 991 (1114)
+...+++.|.++|+++++ .|.. ++.+ .. .++|.|+++||+ .+++|||.||.+..+. |.
T Consensus 76 --------------~~~~~~~~L~~aGv~v~~~~p~~~~~~~~~~~~~R~HrKiiVIDg-~~a~vGg~N~~~~~~~~~g~ 140 (411)
T PRK11263 76 --------------LSDEFVNELTAAGVRFRYFDPRPRLLGMRTNLFRRMHRKIVVIDG-RIAFVGGINYSADHLSDYGP 140 (411)
T ss_pred --------------CCHHHHHHHHHCCeEEEEeCCcccccccccccccCCcceEEEEcC-CEEEEcCeEchHhhccccCC
Confidence 123466789999999863 4532 1110 11 378999999998 7999999999764442 21
Q ss_pred -CCcceEEEEEcC
Q 001250 992 -RDTEIAMGAYQP 1003 (1114)
Q Consensus 992 -rDsEIav~i~dp 1003 (1114)
-..++++.+..|
T Consensus 141 ~~w~D~~v~i~Gp 153 (411)
T PRK11263 141 EAKQDYAVEVEGP 153 (411)
T ss_pred CCceEEEEEEECH
Confidence 135566777655
No 161
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=98.71 E-value=2.5e-09 Score=115.42 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=52.4
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNL 349 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL 349 (1114)
..+.+|+.||.+.|+ +| |+|.|||||||+|..+|. .||||||+ |+.++.++|.+|..
T Consensus 164 ~~~~~l~~~n~~~l~RvY---P~g~RvdSSNynP~~~W~----~G~QmVALN~Qt~d~~m~LN~g~F 223 (226)
T cd08558 164 ESPEEFVKYNKRQLSRVY---PKGTRVDSSNYNPQPFWN----AGCQMVALNYQTPDLPMQLNQGKF 223 (226)
T ss_pred HChHHHHHhcccceeEEC---cCCCcCCCCCCCcHHHHh----CCCeEeeecccCCChhhhhhcccc
Confidence 367889999999999 99 999999999999997777 99999999 99999999888864
No 162
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.71 E-value=3.7e-08 Score=94.35 Aligned_cols=88 Identities=24% Similarity=0.327 Sum_probs=71.3
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEEEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFF 428 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f~ 428 (1114)
|+|+|..++++...+... +++ .+||||.|.+++...+||++ +.||+|||+|.|++. -...+.|+
T Consensus 1 L~I~V~~~RdvdH~~~~~-----~~~-------~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~ 64 (109)
T cd08689 1 LTITITSARDVDHIASPR-----FSK-------RPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVI 64 (109)
T ss_pred CEEEEEEEecCccccchh-----hcc-------CCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEE
Confidence 689999999998777311 111 28999999999987789998 589999999999994 57899999
Q ss_pred EEEecCCCCccceEEEEeeeeeec
Q 001250 429 VKDSDVVGSELIGTVAIPVEQIYS 452 (1114)
Q Consensus 429 V~D~D~~gddfIGqa~IpL~eL~s 452 (1114)
|||......-.||-.-|.+++|..
T Consensus 65 VyDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 65 VYDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred EEeCCCCeecceeeehhhHHHHHH
Confidence 999865555678888888888763
No 163
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=98.70 E-value=1.9e-09 Score=118.36 Aligned_cols=58 Identities=22% Similarity=0.053 Sum_probs=52.7
Q ss_pred CCCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceEEE
Q 001250 286 SSPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGNLD 350 (1114)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGtL~ 350 (1114)
..+.+|+.||++.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.++.++|.+|..+
T Consensus 195 ~~~~~lv~~n~~~l~RvY---P~g~RidSSNynP~~~W~----~G~QmVALN~Qt~D~~m~LN~G~F~ 255 (257)
T cd08593 195 ESGNEFVRHNKRQLSRIY---PAGLRTDSSNYDPQEMWN----VGCQIVALNFQTPGEEMDLNDGLFR 255 (257)
T ss_pred HhHHHHHHhhhhccceeC---CCCCcCCCCCCCcHHHHh----CCCeEeeecccCCChHHHhhhchhc
Confidence 345789999999999 99 999999999999997777 99999999 999999999988653
No 164
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=98.61 E-value=1.9e-07 Score=112.30 Aligned_cols=134 Identities=22% Similarity=0.245 Sum_probs=96.0
Q ss_pred hHHHHHHHHHhcccceEEEE-EEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCccccccccccccccc
Q 001250 546 CWYDICNAISQAQRLIYITG-WSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1114)
Q Consensus 546 ~f~al~~AI~~Ak~~I~I~g-W~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t 624 (1114)
+...+.++|.+||++|+|+. | ++. ...+.++|+.+|++||+|+||+ +........ ..
T Consensus 319 ~~~~~~~~I~~A~~~I~I~tpY-------fip------~~~i~~aL~~Aa~rGV~Vril~-p~~~d~~~~--------~~ 376 (483)
T PRK01642 319 IHQFLLTAIYSARERLWITTPY-------FVP------DEDLLAALKTAALRGVDVRIII-PSKNDSLLV--------FW 376 (483)
T ss_pred HHHHHHHHHHHhccEEEEEcCC-------cCC------CHHHHHHHHHHHHcCCEEEEEe-CCCCCcHHH--------HH
Confidence 56789999999999999985 4 222 2579999999999999999996 443221110 00
Q ss_pred CcHHHHHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCCCc
Q 001250 625 HDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPL 704 (1114)
Q Consensus 625 ~d~~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l 704 (1114)
......+.+.+.||++..... ...|.|++|||+ .++++|..|+...-+..
T Consensus 377 ~~~~~~~~L~~~Gv~I~~y~~-----------------~~~HaK~~ivD~--------~~~~vGS~N~d~rS~~~----- 426 (483)
T PRK01642 377 ASRAFFTELLEAGVKIYRYEG-----------------GLLHTKSVLVDD--------ELALVGTVNLDMRSFWL----- 426 (483)
T ss_pred HHHHHHHHHHHcCCEEEEeCC-----------------CceEeEEEEECC--------CEEEeeCCcCCHhHHhh-----
Confidence 012233445678999875321 137999999999 79999999996532311
Q ss_pred ccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCH-HHHHHHHHHHHHHHHh
Q 001250 705 FRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKA 759 (1114)
Q Consensus 705 ~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGP-AA~Dl~~~F~qRWn~a 759 (1114)
| +++.+.|.++ .|.++.+.|+++|..+
T Consensus 427 -------------N---------------~E~~~~i~d~~~~~~l~~~f~~d~~~s 454 (483)
T PRK01642 427 -------------N---------------FEITLVIDDTGFAADLAAMQEDYFARS 454 (483)
T ss_pred -------------h---------------hcceEEEECHHHHHHHHHHHHHHHHhC
Confidence 1 3578888897 5899999999999864
No 165
>PRK05443 polyphosphate kinase; Provisional
Probab=98.56 E-value=3.7e-07 Score=113.23 Aligned_cols=118 Identities=12% Similarity=0.032 Sum_probs=91.6
Q ss_pred HHHHHHHHhccc-----EEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCch
Q 001250 843 TAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 917 (1114)
Q Consensus 843 ~AYl~aI~~Ak~-----fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~ 917 (1114)
+..++.|++|.+ .|.|+--.+.+++ .|+.+|++|+ +.|++|.|+++..+-.
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s-----------------~iv~aL~~Aa--~~Gk~V~vlve~karf----- 406 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKDS-----------------PIVDALIEAA--ENGKQVTVLVELKARF----- 406 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCCH-----------------HHHHHHHHHH--HcCCEEEEEEccCccc-----
Confidence 566789999999 8998753343343 7999999986 4689999999987621
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCceEEeccCCCc-------eeCCCCCCCCcCCCCC
Q 001250 918 ATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSL-------SGNPTAPNTPERSMEG 990 (1114)
Q Consensus 918 avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~HsK~~ivDd~~-------~~~IGSANiN~RSM~G 990 (1114)
.......++++|.++|+++.|. +.++.+|+|+++||. + ++.|||+|+|.||..
T Consensus 407 ------------de~~n~~~~~~L~~aGv~V~y~------~~~~k~HaK~~lid~-~e~~~~~~~~~iGTgN~n~~s~~- 466 (691)
T PRK05443 407 ------------DEEANIRWARRLEEAGVHVVYG------VVGLKTHAKLALVVR-REGGGLRRYVHLGTGNYNPKTAR- 466 (691)
T ss_pred ------------cHHHHHHHHHHHHHcCCEEEEc------cCCccceeEEEEEEe-ecCCceeEEEEEcCCCCCcchhh-
Confidence 1123445678899999998652 223456999999997 4 899999999999998
Q ss_pred CCCcceEEEEEcCcc
Q 001250 991 TRDTEIAMGAYQPEY 1005 (1114)
Q Consensus 991 ~rDsEIav~i~dp~~ 1005 (1114)
+++|+++.+.+++.
T Consensus 467 -~y~D~~l~t~d~~i 480 (691)
T PRK05443 467 -LYTDLSLLTADPEI 480 (691)
T ss_pred -hccceeEEEeChHH
Confidence 99999999988864
No 166
>PF00387 PI-PLC-Y: Phosphatidylinositol-specific phospholipase C, Y domain This entry is for the whole phospholipase C protein; InterPro: IPR001711 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), an eukaryotic intracellular enzyme, plays an important role in signal transduction processes [] (see IPR001192 from INTERPRO). It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as 'X-box' (see IPR000909 from INTERPRO) and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. At the C-terminal of the Y-box, there is a C2 domain (see IPR000008 from INTERPRO) possibly involved in Ca-dependent membrane attachment.; GO: 0004435 phosphatidylinositol phospholipase C activity, 0006629 lipid metabolic process, 0007165 signal transduction, 0035556 intracellular signal transduction; PDB: 3OHM_B 2FJU_B 2ZKM_X 3QR1_D 3QR0_A 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=98.52 E-value=3.5e-09 Score=103.94 Aligned_cols=53 Identities=21% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeece
Q 001250 288 PGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG 347 (1114)
Q Consensus 288 ~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhG 347 (1114)
+.+|+.||.+.|+ +| |+|.|+|||||+|..+|. .||||||+ |+.+..++|-.|
T Consensus 45 ~~~l~~~~~~~l~Rvy---P~~~R~~SsN~~P~~~W~----~G~Q~vALN~Qt~d~~m~ln~g 100 (118)
T PF00387_consen 45 PSELVEHNKRHLVRVY---PSGTRIDSSNFNPLPFWN----CGCQMVALNFQTPDEPMQLNQG 100 (118)
T ss_dssp HHHHHHHHHHSEEEEE-----TT-TT-----THHHHT----TT-SEEEB-TTS-SHHHHHHHH
T ss_pred cchHHHhcccceEEec---CCccccCCCCCChHHHhh----ccCccceeeccCCChhHHHHHh
Confidence 5789999999999 99 999999999999997777 99999999 999998876555
No 167
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.41 E-value=1.1e-06 Score=104.74 Aligned_cols=122 Identities=13% Similarity=0.061 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCC--CCCCc
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPE--GVPTG 916 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Pe--g~p~~ 916 (1114)
.++..+++++|++||++||||+-||-.++ ++.+|+.+|.+|.++++|++|.|++=..=. |...+
T Consensus 34 ~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~--------------~g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~ 99 (451)
T PRK09428 34 ADFRETLLEKIASAKKRIYIVALYLEDDE--------------AGREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGA 99 (451)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEecCCc--------------hHHHHHHHHHHHHhcCCCcEEEEEEEccccccccccc
Confidence 47999999999999999999999997764 356999999999888999999998864200 00000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHc--CCceeee--cCCCccccccCCceEEeccCCCceeCCCCCCCCcCCCC
Q 001250 917 AATQRILFWQHKTMQMMYETIYKALVEV--GLEGAFS--PQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPERSME 989 (1114)
Q Consensus 917 ~avq~il~wq~~tm~~~~~si~~~L~~a--Gv~~~~~--P~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~RSM~ 989 (1114)
.. .....+++..|+++ |+++.+. |..+..+ -.++|-|+.++|+ .++..| ||||+--+.
T Consensus 100 ~~------------~~~~~~~~~~l~~~~~gv~v~~f~~p~~~~e~-~gr~HrKi~IiD~-~v~ysG-aNi~d~Yl~ 161 (451)
T PRK09428 100 AA------------SNTNADWYCEMAQEYPGVDIPVYGVPVNTREA-LGVLHLKGFIIDD-TVLYSG-ASLNNVYLH 161 (451)
T ss_pred CC------------CCcCHHHHHHHHHhCCCceEEEcCCccccchh-hhhceeeEEEECC-CEEEec-ccccHHHhc
Confidence 00 00123556678776 4777543 3222111 2247999999999 688889 899995553
No 168
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.33 E-value=1.7e-07 Score=111.59 Aligned_cols=89 Identities=27% Similarity=0.413 Sum_probs=78.1
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEE------EEeeeeecCCCCCeeceEEEEEecCC
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAV------VGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~------v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
+|-|.|+-|+++.+.|.+|. |||||+|.+.... +.||+|++.++||+++|.|+|.|.-.
T Consensus 948 ~L~veVlhA~diipLD~NGl---------------SDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e 1012 (1103)
T KOG1328|consen 948 TLVVEVLHAKDIIPLDSNGL---------------SDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPE 1012 (1103)
T ss_pred chhhhhhccccccccCCCCC---------------CCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCcc
Confidence 68899999999999999886 9999999997643 35999999999999999999998643
Q ss_pred -----CceEEEEEEEecC-CCCccceEEEEeeeeee
Q 001250 422 -----AAEVHFFVKDSDV-VGSELIGTVAIPVEQIY 451 (1114)
Q Consensus 422 -----~~~L~f~V~D~D~-~gddfIGqa~IpL~eL~ 451 (1114)
.+-|.|+|+|+|. ..+||-|++.+.|..+.
T Consensus 1013 ~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1013 PCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred ccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 3679999999998 56999999999998876
No 169
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=97.85 E-value=7.4e-05 Score=88.44 Aligned_cols=135 Identities=22% Similarity=0.299 Sum_probs=93.6
Q ss_pred HHHHHHHHhcccceEEEE-EEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccccccccCc
Q 001250 548 YDICNAISQAQRLIYITG-WSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHD 626 (1114)
Q Consensus 548 ~al~~AI~~Ak~~I~I~g-W~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~d 626 (1114)
..+..+|.+|+++|+|+. |.+ . +..+.+.|+.++++||+|+|++ ++.+.... . +.....
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~-------~------~~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~---~---~~~~~~ 332 (438)
T COG1502 273 RLLLKAINSARESILIATPYFV-------P------DRELLAALKAAARRGVDVRIII-PSLGANDS---A---IVHAAY 332 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcC-------C------CHHHHHHHHHHHhcCCEEEEEe-CCCCCCCh---H---HHHHHH
Confidence 679999999999999987 532 2 3568899999999999999996 53221100 0 000001
Q ss_pred HHHHHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCCCccc
Q 001250 627 EETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFR 706 (1114)
Q Consensus 627 ~~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l~~ 706 (1114)
......+...|+++...+. + ...|.|++|||+ .++++|+.|+...-+..
T Consensus 333 ~~~~~~l~~~gv~i~~~~~--------------g--~~lH~K~~iiD~--------~~~~vGS~N~~~rS~~l------- 381 (438)
T COG1502 333 RAYLKELLEAGVKVYEYPG--------------G--AFLHSKVMIIDD--------RTVLVGSANLDPRSLRL------- 381 (438)
T ss_pred HHHHHHHHHhCCEEEEecC--------------C--CcceeeEEEEcC--------CEEEEeCCcCCHhHHHH-------
Confidence 2233445578888754322 0 368999999999 79999999998753321
Q ss_pred ccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCH-HHHHHHHHHHHHHHHh
Q 001250 707 TLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKA 759 (1114)
Q Consensus 707 ~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGP-AA~Dl~~~F~qRWn~a 759 (1114)
| -.+.+.|+.+ .|.++...|...|...
T Consensus 382 -----------N---------------~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 382 -----------N---------------FEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred -----------h---------------hhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 1 1367888887 8888999999777654
No 170
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=97.84 E-value=0.00014 Score=84.09 Aligned_cols=155 Identities=17% Similarity=0.302 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCcccc-ccccccccccc
Q 001250 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSI-LGYKMDGVMQT 624 (1114)
Q Consensus 546 ~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~-lg~k~~gvm~t 624 (1114)
..+||...|..|++.|||.--.-.|.+.-..+ . .-+.|+++|+++|-|||+||+||-+..-+... .++ +
T Consensus 277 DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~--~fw~iDdaiR~aa~RgV~vR~lvs~~~~~~~~m~~~-----L-- 346 (456)
T KOG3603|consen 277 DLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-H--RFWEIDDAIRRAAVRGVKVRLLVSCWKHSEPSMFRF-----L-- 346 (456)
T ss_pred hHHHHHHHHHHHhhheeeeehhccchheeecC-c--chhhhhHHHHHHhhcceEEEEEEeccCCCCchHHHH-----H--
Confidence 36999999999999999976665665332223 3 34599999999999999999998432211100 000 0
Q ss_pred Cc-HHHHHHHhcCCcEEEE--ccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCC
Q 001250 625 HD-EETRRVFKHSSVKVLL--CPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPH 701 (1114)
Q Consensus 625 ~d-~~~~~~~~h~gV~v~l--~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~ 701 (1114)
++ .......++..|+|.+ -|...-. .+.....+|.|..|-+. .||+|--|-+.+||-...
T Consensus 347 ~SLq~l~~~~~~~~iqvk~f~VP~~~~~--------~ip~~Rv~HnKymVTe~---------aayIGTSNws~dYf~~Ta 409 (456)
T KOG3603|consen 347 RSLQDLSDPLENGSIQVKFFIVPQTNIE--------KIPFARVNHNKYMVTES---------AAYIGTSNWSGDYFTSTA 409 (456)
T ss_pred HHHHHhcCccccCceEEEEEEeCCCccc--------cCchhhhccceeEEeec---------ceeeeccCCCccceeccC
Confidence 00 0000112355677765 4653211 23345689999999986 899999999888874310
Q ss_pred CCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEE-----EeCHHHHHHHHHHHHHHHHhc
Q 001250 702 HPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSK-----IDGPAAYDVLTNFEERWRKAS 760 (1114)
Q Consensus 702 H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~r-----VeGPAA~Dl~~~F~qRWn~a~ 760 (1114)
| +.+. -.|+.+.+|...|+.+|+...
T Consensus 410 -------------------------G--------~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Y 440 (456)
T KOG3603|consen 410 -------------------------G--------TAIVVRQTPHKGTLVSQLKAVFERDWNSTY 440 (456)
T ss_pred -------------------------c--------eEEEEecCCCCCcHHHHHHHHHhhcccccc
Confidence 0 1222 246899999999999999653
No 171
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.83 E-value=2.2e-05 Score=94.53 Aligned_cols=105 Identities=19% Similarity=0.381 Sum_probs=79.7
Q ss_pred CCCcEEEEEECCE---EEEeeeeecCCCCCeeceEEEEEecCC----------------CceEEEEEEE-ecC-CCCccc
Q 001250 382 TSDPYVTIAVAGA---VVGRTFVISNSEDPVWQQHFYVPVAHS----------------AAEVHFFVKD-SDV-VGSELI 440 (1114)
Q Consensus 382 tsDPYV~V~L~g~---~v~RTrVI~nt~NPvWNE~F~f~va~~----------------~~~L~f~V~D-~D~-~gddfI 440 (1114)
++||||+|...+. ...+|++++++.+|.|||.|.|.+... .-.|++++|+ ++. .+++|+
T Consensus 150 ~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~Fl 229 (800)
T KOG2059|consen 150 QCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFL 229 (800)
T ss_pred CCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhc
Confidence 3899999998762 225999999999999999999987644 2457888888 444 458999
Q ss_pred eEEEEeeeeeecCceeeeeeeeccC-CCCCC---CCCCeEEEEEEEeccc
Q 001250 441 GTVAIPVEQIYSGGKVEGTYPVLNG-SGKPC---KPGATLTLSIQYTPME 486 (1114)
Q Consensus 441 Gqa~IpL~eL~sG~~id~W~pLl~~-~Gkp~---k~~g~L~L~l~F~p~~ 486 (1114)
|++.+|+..+.....-+.||-|..+ +|+.. +.-|.+++.+.|+.-.
T Consensus 230 Gevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~ 279 (800)
T KOG2059|consen 230 GEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDH 279 (800)
T ss_pred eeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeece
Confidence 9999999998854445799999754 33322 2347889999988643
No 172
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.73 E-value=5.1e-05 Score=75.28 Aligned_cols=82 Identities=28% Similarity=0.484 Sum_probs=65.4
Q ss_pred CCCCcEEEEEEC---CEEEEeeeeecCCCCCeeceEEEEEec--------CC--------CceEEEEEEEecC-------
Q 001250 381 ITSDPYVTIAVA---GAVVGRTFVISNSEDPVWQQHFYVPVA--------HS--------AAEVHFFVKDSDV------- 434 (1114)
Q Consensus 381 itsDPYV~V~L~---g~~v~RTrVI~nt~NPvWNE~F~f~va--------~~--------~~~L~f~V~D~D~------- 434 (1114)
++.++||+|.+. +.+..+|+++.++.-|.+|-+|+|+|. .. .+.+.|+||....
T Consensus 31 VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~ 110 (143)
T cd08683 31 VGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTI 110 (143)
T ss_pred cccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCcccccee
Confidence 458999999964 455569999999999999999999986 21 2579999998765
Q ss_pred ----CCCccceEEEEeeeeeecC-ceeeeeeee
Q 001250 435 ----VGSELIGTVAIPVEQIYSG-GKVEGTYPV 462 (1114)
Q Consensus 435 ----~gddfIGqa~IpL~eL~sG-~~id~W~pL 462 (1114)
.+|=+||.+.||+.+|... ..+.+||++
T Consensus 111 ~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 111 KIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 2355899999999999842 447899986
No 173
>PLN02866 phospholipase D
Probab=97.34 E-value=0.00066 Score=86.44 Aligned_cols=121 Identities=13% Similarity=0.114 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchh
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 918 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~a 918 (1114)
.+...++++||++||++|||+.=.|-|.-+.+.. ....++..|.+.|.+|+ ++||+|+|++=..... +
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp-----~~D~~g~RL~~lL~rKA--krGVkVrVLLyD~vg~-----a 410 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRP-----FHDHESSRLDSLLEAKA--KQGVQIYILLYKEVAL-----A 410 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEec-----CCCchHHHHHHHHHHHH--HCCCEEEEEEECcccc-----c
Confidence 5789999999999999999954222222111100 01124568888888864 6799999874321110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HcCCceeeecCCCc-cccccCCceEEeccCCCceeCCCCCCC
Q 001250 919 TQRILFWQHKTMQMMYETIYKALV--EVGLEGAFSPQDYL-NFFCLGNREVIDQTDTSLSGNPTAPNT 983 (1114)
Q Consensus 919 vq~il~wq~~tm~~~~~si~~~L~--~aGv~~~~~P~~Yl-~f~~L~~HsK~~ivDd~~~~~IGSANi 983 (1114)
+ ++...+ ..+.|. ..||++...|..+. ..+..++|.|+.+||+ .++.+|..||
T Consensus 411 l---------~~~S~~--~k~~L~~lh~gI~V~r~P~~~~~~~ln~RhHRKIVVIDg-~IAFvGGiNL 466 (1068)
T PLN02866 411 L---------KINSVY--SKRRLLGIHENVKVLRYPDHFSSGVYLWSHHEKLVIVDY-QICFIGGLDL 466 (1068)
T ss_pred c---------ccCchh--hHHHHHHhCCCeEEEecCcccccCcccccCCCCeEEECC-CEEEecCccc
Confidence 0 000001 011222 35777643453322 1245689999999999 7999999999
No 174
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.00042 Score=82.36 Aligned_cols=100 Identities=18% Similarity=0.245 Sum_probs=79.4
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC------EEEEeeeeecCCCCCeeceEEEEEecCC
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG------AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g------~~v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
.++|+|.-|.+|.=. ..| .-.|||.|.+-| ++...|+...|+|.|.+||+|+|-+...
T Consensus 1126 kvtvkvvaandlkwq-tsg---------------mFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e 1189 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQ-TSG---------------MFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNE 1189 (1283)
T ss_pred eEEEEEEecccccch-hcc---------------ccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccC
Confidence 378999999988622 222 146999999854 4445889999999999999999998644
Q ss_pred ----CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeec
Q 001250 422 ----AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 422 ----~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
.-.|.|.|+|+..- .|..+|-+.++|.++.....--.|++|.
T Consensus 1190 ~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLg 1236 (1283)
T KOG1011|consen 1190 GGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLG 1236 (1283)
T ss_pred CCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeecc
Confidence 25799999999874 4779999999999998665667899994
No 175
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.22 E-value=0.00021 Score=89.89 Aligned_cols=107 Identities=20% Similarity=0.265 Sum_probs=82.7
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEE
Q 001250 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVP 417 (1114)
Q Consensus 342 ~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~ 417 (1114)
+-+-.|+|.|-|.-+|+|+-.. .|. .+||||+.++-. +...||+|++++.||.+||.....
T Consensus 1519 IsY~~~~LtImV~H~K~L~~Lq-dg~--------------~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~ 1583 (1639)
T KOG0905|consen 1519 ISYNNGTLTIMVMHAKGLALLQ-DGQ--------------DPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYD 1583 (1639)
T ss_pred EEEcCceEEEEhhhhccccccc-CCC--------------CCCcceeEEecCCchHhhhhhhccccccCCCchhhheeec
Confidence 3456789999999999995332 121 289999999953 233499999999999999977654
Q ss_pred ---ecCC-CceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeec
Q 001250 418 ---VAHS-AAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 418 ---va~~-~~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
.... ...|.+.||..+. ..+.|+|.++|+|.++.-..+..+||+|-
T Consensus 1584 g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1584 GFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred CCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 2222 3789999998877 45889999999999988655556999994
No 176
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.21 E-value=0.00021 Score=89.12 Aligned_cols=120 Identities=20% Similarity=0.236 Sum_probs=92.1
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEE-eeeeecCCCCCeeceEEEEEecCC-CceEE
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVG-RTFVISNSEDPVWQQHFYVPVAHS-AAEVH 426 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~-RTrVI~nt~NPvWNE~F~f~va~~-~~~L~ 426 (1114)
.+|.|.+|.+|...|..|. .|||+.|.++++... ++.-+.+++||++++-|.+.+.-+ +..++
T Consensus 615 vrVyvv~A~~L~p~D~ng~---------------adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~ 679 (1105)
T KOG1326|consen 615 VRVYVVEAFSLQPSDGNGD---------------ADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLI 679 (1105)
T ss_pred EEEEEEEeeeccccCCCCC---------------cCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcce
Confidence 7899999999999999886 899999999997753 778899999999999999998877 57899
Q ss_pred EEEEEecCCC-CccceEEEEeeeeeecCceeeeeeeeccC-CCCCCCCCCeEEEEEEEeccccccccc
Q 001250 427 FFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLNG-SGKPCKPGATLTLSIQYTPMERLSFYH 492 (1114)
Q Consensus 427 f~V~D~D~~g-ddfIGqa~IpL~eL~sG~~id~W~pLl~~-~Gkp~k~~g~L~L~l~F~p~~~~~~~~ 492 (1114)
++|+|+|..+ |+.||++.|.++ ++|+...+. .|... .-......+++.+......|.
T Consensus 680 v~vyd~D~~~~d~~iget~iDLE--------nR~~T~~~a~cglaq-~y~v~g~n~W~d~~~ps~iL~ 738 (1105)
T KOG1326|consen 680 VEVYDHDLEAQDEKIGETTIDLE--------NRWLTRHRARCGLAQ-TYCVSGANIWRDRMDPSQILK 738 (1105)
T ss_pred eEEEEeecccccchhhceehhhh--------hcccCcCCcccCccc-eeeeeccccccCccCHHHHHH
Confidence 9999999965 999999999876 256665543 33321 112334455555555555554
No 177
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.00071 Score=76.16 Aligned_cols=98 Identities=19% Similarity=0.217 Sum_probs=76.3
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecCC--
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~~-- 421 (1114)
-|.|+++.+..|..+|..+. +||||.+.+.. +..+||.+.+++.||++||+|.|.+.+.
T Consensus 234 ~l~vt~iRc~~l~ssDsng~---------------sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdL 298 (362)
T KOG1013|consen 234 GLIVTIIRCSHLASSDSNGY---------------SDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDL 298 (362)
T ss_pred ceEEEEEEeeeeeccccCCC---------------CCccceeecCCCcchhhcccCcchhccCCccccccccccCCccch
Confidence 38999999999999998886 99999999853 2335999999999999999999988655
Q ss_pred -CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeee
Q 001250 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1114)
Q Consensus 422 -~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pL 462 (1114)
...+.|.|||++.- +.+++|-...-. ...+...+.|+.-
T Consensus 299 a~~kv~lsvgd~~~G~s~d~~GG~~~g~--~rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 299 AYKKVALSVGDYDIGKSNDSIGGSMLGG--YRRGEVHKHWGRC 339 (362)
T ss_pred hcceEEEeecccCCCcCccCCCcccccc--cccchhhcCcccc
Confidence 36799999999984 688888654433 2334445556544
No 178
>PLN02964 phosphatidylserine decarboxylase
Probab=96.96 E-value=0.00058 Score=84.43 Aligned_cols=102 Identities=15% Similarity=0.236 Sum_probs=78.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCC-c
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-A 423 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~-~ 423 (1114)
..|.+.++|++|+ |++ .|+|..+-.-|.++.||.+.+++.||+|||+..|.|.... .
T Consensus 52 ~~~~~~~~~~~~~----~~~------------------~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~ 109 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF------------------KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPH 109 (644)
T ss_pred ccCeEEEEeehhh----hcc------------------CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcc
Confidence 3477899999997 443 5887766666666679999999999999999888886543 4
Q ss_pred eEEEEEEEecC-CCCccceEEEEeeeeeecCce--eeeeeeeccCCCC
Q 001250 424 EVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGK--VEGTYPVLNGSGK 468 (1114)
Q Consensus 424 ~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~--id~W~pLl~~~Gk 468 (1114)
..+|.|+|.+. ..++++|.+.+++.++...+. +...|.++|+++.
T Consensus 110 ~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgd 157 (644)
T PLN02964 110 LARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSS 157 (644)
T ss_pred eEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCC
Confidence 56999999998 569999999999888875432 2244788887764
No 179
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=96.79 E-value=0.00088 Score=49.55 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.7
Q ss_pred cccccceEEEcCCCCCCCccEEEEEcccccCCC
Q 001250 663 YTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDG 695 (1114)
Q Consensus 663 ~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dg 695 (1114)
.++|+|++|||+ ..+|+||.|++.+
T Consensus 3 ~~~H~K~~v~D~--------~~~~iGs~N~~~~ 27 (28)
T smart00155 3 GVLHTKLMIVDD--------EIAYIGSANLDGR 27 (28)
T ss_pred CcEEeEEEEEcC--------CEEEEeCccCCCC
Confidence 579999999999 7999999999874
No 180
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.00032 Score=78.85 Aligned_cols=91 Identities=23% Similarity=0.252 Sum_probs=72.7
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEE--ecCC
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVP--VAHS 421 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~--va~~ 421 (1114)
.|+.+|..|++|..||+.+. -|||++..+.. ....||++..+++||.|||+-... ..+.
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~---------------~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~ 158 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGL---------------ADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDD 158 (362)
T ss_pred hcceeechhcccchhhhhhh---------------cchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccch
Confidence 48999999999999999875 79999998853 111389999999999999865544 3333
Q ss_pred --CceEEEEEEEecCC-CCccceEEEEeeeeeecC
Q 001250 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG 453 (1114)
Q Consensus 422 --~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG 453 (1114)
...+++.|.|.+.+ .++++|+..+++..|.+.
T Consensus 159 ~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~ 193 (362)
T KOG1013|consen 159 THLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPL 193 (362)
T ss_pred hhhhhhheeeccCcccccccCcccchhhhhccChh
Confidence 36788888888874 489999999999988854
No 181
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=96.77 E-value=0.00068 Score=50.14 Aligned_cols=25 Identities=16% Similarity=-0.061 Sum_probs=22.6
Q ss_pred CCceEEeccCCCceeCCCCCCCCcCC
Q 001250 962 GNREVIDQTDTSLSGNPTAPNTPERS 987 (1114)
Q Consensus 962 ~~HsK~~ivDd~~~~~IGSANiN~RS 987 (1114)
.+|+|++++|+ .++.|||+|++.||
T Consensus 4 ~~H~K~~v~D~-~~~~iGs~N~~~~~ 28 (28)
T smart00155 4 VLHTKLMIVDD-EIAYIGSANLDGRS 28 (28)
T ss_pred cEEeEEEEEcC-CEEEEeCccCCCCC
Confidence 35999999998 78999999999997
No 182
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=96.61 E-value=0.017 Score=72.24 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=81.7
Q ss_pred HHHHHHHHhccc-----EEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCch
Q 001250 843 TAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 917 (1114)
Q Consensus 843 ~AYl~aI~~Ak~-----fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~ 917 (1114)
+..++.|++|.+ .|.|+- |-+.+. ..|+.+|.+|+++ |.+|.|++=...-.. +.+
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tl-Yr~~~~----------------s~ii~aL~~Aa~~--Gk~V~v~veLkArfd-e~~ 401 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTL-YRTSKD----------------SPIIDALIEAAEN--GKEVTVVVELKARFD-EEA 401 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEE-EEecCC----------------cHHHHHHHHHHHc--CCEEEEEEEehhhcc-chh
Confidence 567789999998 899985 555432 1799999998754 566666666433111 011
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCceEEeccCCC------ceeCCCCCCCCcCCCCCC
Q 001250 918 ATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTS------LSGNPTAPNTPERSMEGT 991 (1114)
Q Consensus 918 avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~HsK~~ivDd~------~~~~IGSANiN~RSM~G~ 991 (1114)
--.+.++|.++|+++.| ++.++.+|+|+++|+.. ..+.+||.|+|...-.
T Consensus 402 ----------------ni~wa~~le~aG~~viy------g~~~~k~H~K~~li~r~~~~~~~~y~~igTgN~n~~ta~-- 457 (672)
T TIGR03705 402 ----------------NIRWARRLEEAGVHVVY------GVVGLKTHAKLALVVRREGGELRRYVHLGTGNYHPKTAR-- 457 (672)
T ss_pred ----------------hHHHHHHHHHcCCEEEE------cCCCeeeeeEEEEEEEeeCCceEEEEEecCCCCCCcccc--
Confidence 11234579999999875 33456789999988752 2578999999999765
Q ss_pred CCcceEEEEEcCc
Q 001250 992 RDTEIAMGAYQPE 1004 (1114)
Q Consensus 992 rDsEIav~i~dp~ 1004 (1114)
.-+++++..-+++
T Consensus 458 ~y~D~~l~t~~~~ 470 (672)
T TIGR03705 458 LYTDLSLFTADPE 470 (672)
T ss_pred cccceeEEEeChH
Confidence 6678887765554
No 183
>PF13918 PLDc_3: PLD-like domain
Probab=96.42 E-value=0.0069 Score=63.83 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=49.1
Q ss_pred CceeecCCccccchhhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHh-ccCCEEEEEE
Q 001250 531 PHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKS-QEGVRVLLLV 604 (1114)
Q Consensus 531 ~~~~~~~g~~y~~g~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA-~eGVrVrlLv 604 (1114)
|+-+...|+.. .-++|...|.+|+++|||+--...|-+. .... ..--..|+++|+++| +|||+||+||
T Consensus 72 Pp~~~~~gRT~----DldAIl~~I~~A~~fI~IsVMdY~P~~~-~~~~-~~YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 72 PPPFCPKGRTL----DLDAILSVIDSAKKFIYISVMDYLPTSR-YSKP-NRYWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred CcccCCCCCCc----HHHHHHHHHHhHhheEEEEEeecCCeee-cCCC-CCcchhHHHHHHHHHHHcCCeEEEEE
Confidence 44444445433 4699999999999999998776666332 2221 123468999999887 8999999998
No 184
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.004 Score=71.35 Aligned_cols=109 Identities=18% Similarity=0.225 Sum_probs=83.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
-.|.|+|.|+.|++|..+-..+. .++|||+|++-. ....+|+...++..|.+-++..|.-..
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~--------------~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp 332 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKS--------------LPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP 332 (405)
T ss_pred ccCceeEEEEecccccccCCccc--------------ccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC
Confidence 35689999999999986543221 389999999853 122489999999999777788887777
Q ss_pred CCceEEEEEEE-ecC-CCCccceEEEEeeeeeecCc-eeeeeeeeccCCC
Q 001250 421 SAAEVHFFVKD-SDV-VGSELIGTVAIPVEQIYSGG-KVEGTYPVLNGSG 467 (1114)
Q Consensus 421 ~~~~L~f~V~D-~D~-~gddfIGqa~IpL~eL~sG~-~id~W~pLl~~~G 467 (1114)
+...|.++||- +.. ..+.|+|.++|-+.+|.-+. ...+||+|+...-
T Consensus 333 ~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 333 PGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSS 382 (405)
T ss_pred CccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCcc
Confidence 78899999984 322 33679999999999998554 6779999986543
No 185
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=96.15 E-value=0.074 Score=61.66 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHh--ccCCEEEEEEecCC-Cccccccccccc
Q 001250 544 GKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKS--QEGVRVLLLVWDDP-TSRSILGYKMDG 620 (1114)
Q Consensus 544 g~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA--~eGVrVrlLvwD~~-~s~~~lg~k~~g 620 (1114)
-..|+.+-.-|.+||++|+|+.- ||=. ....|.+.|..+. +.-++|.||+ |.. +.....+-.
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasL------YlG~-----~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~~--- 102 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASL------YLGK-----LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNSC--- 102 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeee------ccch-----hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCcccc---
Confidence 35689999999999999999853 3411 3466777776654 5689999995 643 222111100
Q ss_pred ccccCcHHHHHHHhcCCcEEEE--ccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCC
Q 001250 621 VMQTHDEETRRVFKHSSVKVLL--CPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYD 698 (1114)
Q Consensus 621 vm~t~d~~~~~~~~h~gV~v~l--~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwD 698 (1114)
.....-....-....|++.+ -|...+.....+.....-.....|-||.-+|++ ..+-|.||...++-
T Consensus 103 --s~llp~~l~kkf~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGanls~dyfT 171 (469)
T KOG3964|consen 103 --SALLPVWLGKKFPERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGANLSNDYFT 171 (469)
T ss_pred --hhhchHHHhhhhhhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHh---------hhcccccchhhhhc
Confidence 00011000000123466655 254433221111100011235799999999983 36789999997665
Q ss_pred CC
Q 001250 699 NP 700 (1114)
Q Consensus 699 t~ 700 (1114)
+.
T Consensus 172 NR 173 (469)
T KOG3964|consen 172 NR 173 (469)
T ss_pred cc
Confidence 43
No 186
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=96.13 E-value=0.0011 Score=74.54 Aligned_cols=56 Identities=18% Similarity=0.118 Sum_probs=47.1
Q ss_pred CCccccCCCCcc-ccCcCCCCCc---------ccCCCCCccccCCCCCCCCceeccC--CCCCcceeeeceE
Q 001250 289 GGFYGYPNDSFS-SYPERAYLGM---------IDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHGN 348 (1114)
Q Consensus 289 ~~~~~~~~~~~~-~~~~~~~~~r---------~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhGt 348 (1114)
.+|..|+++.|+ +| |+|.| +|||||+|..+|...+ +||||||+ |+.++.+.|..|.
T Consensus 203 ~~~~~~n~~~l~~ny---psgtr~~~~~~~~a~~snn~~p~~~w~~~~-~g~qiValdfqt~~~~~~ln~~~ 270 (274)
T cd00137 203 VQFVDYNKNQLSRNY---PSGTSGGTAWYYYAMDSNNYMPQMFWNANP-AGCGIVILDFQTMDLPMQQYMAV 270 (274)
T ss_pred HHHHhcCcceEEEEc---cCccCCCCcchhhHhhcCccChHHHhcccc-CCceEEEeeCcCCCccHHHHhhh
Confidence 458888888999 99 99999 9999999998888443 49999999 8888877766554
No 187
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=95.91 E-value=0.0025 Score=79.88 Aligned_cols=98 Identities=23% Similarity=0.294 Sum_probs=75.1
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEe-c--------
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPV-A-------- 419 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~v-a-------- 419 (1114)
|++.|+.|+.|..+|..+. +|||+.|.+.+..+ .|.|+.+++||.||++..|.- .
T Consensus 208 lR~yiyQar~L~a~dk~~~---------------sdp~a~v~f~~qs~-~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~ 271 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDE---------------SDPDAAVEFCGQSK-ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLV 271 (1105)
T ss_pred hHHHHHHHHhhcCCCcccC---------------CCchhhhhcccccc-eeEeecCcCCCCccceeeccceeecCccchh
Confidence 6777888888887776543 99999999998875 999999999999999988851 1
Q ss_pred -CCCceEEEEEEEecCCC-CccceEEEEeeeeee-cCceeeeeeeecc
Q 001250 420 -HSAAEVHFFVKDSDVVG-SELIGTVAIPVEQIY-SGGKVEGTYPVLN 464 (1114)
Q Consensus 420 -~~~~~L~f~V~D~D~~g-ddfIGqa~IpL~eL~-sG~~id~W~pLl~ 464 (1114)
.....+.|+|+|.|..+ ++|+|+......-+. .+. -.|+++..
T Consensus 272 ~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~~p~--lkw~p~~r 317 (1105)
T KOG1326|consen 272 LKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQCPA--LKWVPTMR 317 (1105)
T ss_pred hcCCCeEEEEeehhhhhchHHhhcccccceEEEecCCc--cceEEeec
Confidence 11257889999999855 899999766443333 233 48999963
No 188
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=95.77 E-value=0.058 Score=60.85 Aligned_cols=136 Identities=21% Similarity=0.219 Sum_probs=81.6
Q ss_pred HHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccccccccCcH
Q 001250 548 YDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTHDE 627 (1114)
Q Consensus 548 ~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~d~ 627 (1114)
+-+.+-|.+|++.|-|..= ++.| ..-|.|||..+.+|||-||||+ |......++. |.. +
T Consensus 137 E~vR~~I~~A~kVIAIVMD-------~FTD-----~dIf~DLleAa~kR~VpVYiLL-D~~~~~~Fl~------Mc~--~ 195 (284)
T PF07894_consen 137 EVVRRMIQQAQKVIAIVMD-------VFTD-----VDIFCDLLEAANKRGVPVYILL-DEQNLPHFLE------MCE--K 195 (284)
T ss_pred HHHHHHHHHhcceeEEEee-------cccc-----HHHHHHHHHHHHhcCCcEEEEe-chhcChHHHH------HHH--H
Confidence 7788999999999998743 3333 2467888777779999999996 7655432210 100 0
Q ss_pred HHHHHHhcCCcEEEE------ccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCC
Q 001250 628 ETRRVFKHSSVKVLL------CPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPH 701 (1114)
Q Consensus 628 ~~~~~~~h~gV~v~l------~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~ 701 (1114)
--.....-.|++|+. +-+. + ..+-..-++|+++||+ ..+..|.-=.+.. +..-
T Consensus 196 ~~v~~~~~~nmrVRsv~G~~y~~rs-g----------~k~~G~~~eKF~lvD~--------~~V~~GSYSFtWs--~~~~ 254 (284)
T PF07894_consen 196 LGVNLQHLKNMRVRSVTGCTYYSRS-G----------KKFKGQLKEKFMLVDG--------DKVISGSYSFTWS--SSRV 254 (284)
T ss_pred CCCChhhcCCeEEEEecCCeeecCC-C----------CeeeCcccceeEEEec--------ccccccccceeec--cccc
Confidence 000001123444442 2111 1 1123578999999999 4666665433221 1111
Q ss_pred CCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHH
Q 001250 702 HPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERW 756 (1114)
Q Consensus 702 H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPAA~Dl~~~F~qRW 756 (1114)
| +-+-..+.|.+|...-+.|+.-.
T Consensus 255 ~-------------------------------r~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 255 H-------------------------------RNLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred c-------------------------------cceeEEEeccccchHhHHHHHHH
Confidence 1 12678899999999999887654
No 189
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.54 E-value=0.21 Score=50.22 Aligned_cols=119 Identities=22% Similarity=0.324 Sum_probs=81.8
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEE--EEeeeeecC-CCCCeeceEEEEEecCC---
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAV--VGRTFVISN-SEDPVWQQHFYVPVAHS--- 421 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~--v~RTrVI~n-t~NPvWNE~F~f~va~~--- 421 (1114)
.+.|+|.+..+++..+ .-.||....++.. .+.|..... +-.-.|||+|.+.|.-.
T Consensus 8 ~~~l~i~~l~~~p~~~-------------------~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~ 68 (143)
T PF10358_consen 8 QFDLTIHELENLPSSN-------------------GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDK 68 (143)
T ss_pred EEEEEEEEeECcCCCC-------------------CEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcC
Confidence 3789999999998521 3446666666554 345554433 55678999999986421
Q ss_pred ------CceEEEEEEEecCCCC-ccceEEEEeeeeeec--CceeeeeeeeccCCCCCCCCCCeEEEEEEEecccccc
Q 001250 422 ------AAEVHFFVKDSDVVGS-ELIGTVAIPVEQIYS--GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLS 489 (1114)
Q Consensus 422 ------~~~L~f~V~D~D~~gd-dfIGqa~IpL~eL~s--G~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~~~~ 489 (1114)
...+.|.|......+. ..+|.+.|.|.+... ...+..-++|... + +..+.|+|+|++.+...++
T Consensus 69 k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~--~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 69 KSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--K--KSNATLSISISLSELREDP 141 (143)
T ss_pred CCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--C--CCCcEEEEEEEEEECccCC
Confidence 2568899988755444 499999999999986 3455666777543 1 2346899999988876543
No 190
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.19 E-value=0.031 Score=67.36 Aligned_cols=83 Identities=30% Similarity=0.530 Sum_probs=65.1
Q ss_pred EEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC---C--EEEEeeeeecCCCCCeeceEEEEEec-----CCC
Q 001250 353 IYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---G--AVVGRTFVISNSEDPVWQQHFYVPVA-----HSA 422 (1114)
Q Consensus 353 I~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~---g--~~v~RTrVI~nt~NPvWNE~F~f~va-----~~~ 422 (1114)
.++|++|.++|++++ +|||..+.-- + ..+.||.++++++||.|-+ |.+.+. ++.
T Consensus 142 ~~~~~~ld~kd~f~k---------------sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~ 205 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSK---------------SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGN 205 (529)
T ss_pred eeeeeecCccccccc---------------CCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCC
Confidence 445788888888776 8999877642 2 3446999999999999984 555532 345
Q ss_pred ceEEEEEEEecCCC-CccceEEEEeeeeee
Q 001250 423 AEVHFFVKDSDVVG-SELIGTVAIPVEQIY 451 (1114)
Q Consensus 423 ~~L~f~V~D~D~~g-ddfIGqa~IpL~eL~ 451 (1114)
..+.+.|+|++..+ +++||++..+++++.
T Consensus 206 ~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 206 RPIQIECYDYDSNGKHDLIGKFQTTLSELQ 235 (529)
T ss_pred CceEEEEeccCCCCCcCceeEecccHHHhc
Confidence 78999999999866 499999999999886
No 191
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.92 E-value=0.26 Score=57.33 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=92.4
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC-------
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS------- 421 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~------- 421 (1114)
+-|.|.+|++.+.... -.-.+...+++... .|-.+..+..|.||.+..+.+..-
T Consensus 2 ivl~i~egr~F~~~~~------------------~~~vv~a~~ng~~l-~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~ 62 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPR------------------HPIVVEAKFNGESL-ETDPVPHTESPQFNTELAWECDRKALKQHRL 62 (340)
T ss_pred EEEEEecccCCCCCCC------------------ccEEEEEEeCCcee-eecCCCCCCCceeecceeeeccHHHHHHhhc
Confidence 5688999999985421 45688899999887 888888899999999999987532
Q ss_pred -CceEEEEEEEecC--CCCccceEEEEeeeee---ecC--ceeeeeeeeccCCCCCCCCCCeEEEEEEEecccc
Q 001250 422 -AAEVHFFVKDSDV--VGSELIGTVAIPVEQI---YSG--GKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMER 487 (1114)
Q Consensus 422 -~~~L~f~V~D~D~--~gddfIGqa~IpL~eL---~sG--~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~~ 487 (1114)
...|+++++-.|. ...+.||.+.|+|... ..+ ....+||+|++.+.+..+...+|.|.|.......
T Consensus 63 ~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 63 QRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred cCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 3578999998883 4578999999999998 555 4567999999884443333468888888776554
No 192
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=94.87 E-value=0.16 Score=53.04 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=68.6
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEE--CCEEEE---eeeeecCCCCCeeceEEEE
Q 001250 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYV 416 (1114)
Q Consensus 342 ~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L--~g~~v~---RTrVI~nt~NPvWNE~F~f 416 (1114)
+|=+...|+|+|.+++++.-.+ .+|-||++.| +++... .|+-+. ..++.|||-.+|
T Consensus 3 lwd~~~~~~v~i~~~~~~~~~~------------------~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~f 63 (158)
T cd08398 3 LWKINSNLRIKILCATYVNVND------------------IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDY 63 (158)
T ss_pred ceeCCCCeEEEEEeeccCCCCC------------------cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEc
Confidence 4556677999999999987432 1688998876 444332 344333 367999998777
Q ss_pred Eec--CC--CceEEEEEEEecCCC-----CccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEecc
Q 001250 417 PVA--HS--AAEVHFFVKDSDVVG-----SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1114)
Q Consensus 417 ~va--~~--~~~L~f~V~D~D~~g-----ddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~ 485 (1114)
++. +. .+.|.|+|++....+ ...||.+.++|- |.+|.-. .|...|.|+-.+.
T Consensus 64 pI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF---------------d~~~~Lr--~G~~~L~lW~~~~ 124 (158)
T cd08398 64 DIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF---------------DYTDTLV--SGKMALNLWPVPH 124 (158)
T ss_pred ccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE---------------CCCChhh--CCCEEEEEEcCCc
Confidence 754 22 489999999976421 134666655554 3333321 2577777776544
No 193
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=94.83 E-value=0.0051 Score=45.84 Aligned_cols=24 Identities=8% Similarity=-0.051 Sum_probs=15.7
Q ss_pred CceEEeccCCCceeCCCCCCCCcCC
Q 001250 963 NREVIDQTDTSLSGNPTAPNTPERS 987 (1114)
Q Consensus 963 ~HsK~~ivDd~~~~~IGSANiN~RS 987 (1114)
.|+|++++|+ +++.|||+||+.|+
T Consensus 5 ~H~K~~vvD~-~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 5 HHQKFVVVDD-RVAFVGGANLCDGR 28 (28)
T ss_dssp E---EEEETT-TEEEEE---SSHHH
T ss_pred eeeEEEEEcC-CEEEECceecCCCC
Confidence 4999999999 79999999999874
No 194
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=94.77 E-value=0.02 Score=53.76 Aligned_cols=96 Identities=11% Similarity=0.172 Sum_probs=67.3
Q ss_pred EEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEE--EEECCEEEEeeeeecCCCCCeeceEEEEEecCC---Cce
Q 001250 350 DIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVT--IAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS---AAE 424 (1114)
Q Consensus 350 ~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~--V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~---~~~ 424 (1114)
-++|..+++|.-....+. .+.-|++ +.+.+....||.+.+...||+++|+|.|.++-. .-.
T Consensus 2 witv~~c~d~s~~~~~~e--------------~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~ 67 (103)
T cd08684 2 WITVLKCKDLSWPSSCGE--------------NPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVR 67 (103)
T ss_pred EEEEEEecccccccccCc--------------CCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceE
Confidence 378888888864433332 1223443 445565666999999999999999999997643 356
Q ss_pred EEEEEEEecCCCCccceEEEEeeeeeecCceeeeeee
Q 001250 425 VHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYP 461 (1114)
Q Consensus 425 L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~p 461 (1114)
|.|.|.. .+.+.+.||.+.+.++++-. ++.+.|.+
T Consensus 68 L~fsv~~-~~~RKe~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 68 LVFKIQT-QTPRKRTIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred EEEEeec-cCCccceeeEEEeecccCCH-HHhhhhhc
Confidence 7777776 45678899999999998753 34566764
No 195
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=93.75 E-value=0.061 Score=62.51 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=83.8
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecCC---
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS--- 421 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~~--- 421 (1114)
|++.|..+.+++.... .. ..|-|+++.+.- ....+|.||+++..|.++|.|.+.+...
T Consensus 369 lel~ivrg~~~pvp~g-p~--------------hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~ 433 (523)
T KOG3837|consen 369 LELAIVRGQKNPVPGG-PM--------------HLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGL 433 (523)
T ss_pred hHHHHhhcccCCCCCC-ch--------------hHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcc
Confidence 6677777776653321 11 156777777631 2224999999999999999999987641
Q ss_pred ---------CceEEEEEEEecC--CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEe
Q 001250 422 ---------AAEVHFFVKDSDV--VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1114)
Q Consensus 422 ---------~~~L~f~V~D~D~--~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~ 483 (1114)
.-.+.|+|+.... -+|.|+|.+.|.++.|...-.+...++|.| |++.. ||+|.++++..
T Consensus 434 nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D--GRK~v-GGkLevKvRiR 503 (523)
T KOG3837|consen 434 NREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD--GRKAV-GGKLEVKVRIR 503 (523)
T ss_pred cHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc--ccccc-CCeeEEEEEEe
Confidence 1358899998765 358899999999998887667788899964 54432 46888888754
No 196
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.14 E-value=0.6 Score=49.41 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=51.6
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEE--CCEEEE---eeeeecCCCCCeeceEEEEE
Q 001250 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVP 417 (1114)
Q Consensus 343 ~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L--~g~~v~---RTrVI~nt~NPvWNE~F~f~ 417 (1114)
|=.+..++|+|..+.++...+. ..+-||++.| +++.+. .|+.+.-...+.|||.+.|+
T Consensus 4 w~~~~~f~i~i~~~~~~~~~~~-----------------~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~ 66 (173)
T cd08693 4 WDIEEKFSITLHKISNLNAAER-----------------TMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFD 66 (173)
T ss_pred eccCCCEEEEEEEeccCccCCC-----------------CceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcc
Confidence 4455679999999999974111 2577888765 454432 55544445679999988887
Q ss_pred ec--CC--CceEEEEEEEecC
Q 001250 418 VA--HS--AAEVHFFVKDSDV 434 (1114)
Q Consensus 418 va--~~--~~~L~f~V~D~D~ 434 (1114)
+. +. .+.|.|+|++...
T Consensus 67 I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 67 INVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred cchhcCChhHeEEEEEEEecc
Confidence 54 22 4889999998654
No 197
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=91.67 E-value=0.31 Score=53.66 Aligned_cols=48 Identities=27% Similarity=0.287 Sum_probs=39.1
Q ss_pred hHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEec
Q 001250 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWD 606 (1114)
Q Consensus 546 ~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD 606 (1114)
..+.+.+.|++|+++|+|..|. + .-.+|.+.|++|+++||+|.|+++.
T Consensus 11 I~~~i~elI~~Ae~eI~is~~~----------~---~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 11 ILERIRELIENAESEIYISIPP----------E---FLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHC-SSEEEEEE-G----------G---GHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHhheEEEEEcCH----------H---HHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 4788999999999999999882 1 3468999999999999999999877
No 198
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=91.25 E-value=1.5 Score=45.14 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=58.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEE--CCEEE---EeeeeecCCCCCeeceEEEEEec-
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVV---GRTFVISNSEDPVWQQHFYVPVA- 419 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L--~g~~v---~RTrVI~nt~NPvWNE~F~f~va- 419 (1114)
...++|+|....++...+. ...+.||++.| +++.. ..|+......++.|||...|++.
T Consensus 7 ~~~~~i~i~~~~~~~~~~~----------------~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~ 70 (156)
T cd08380 7 NFNLRIKIHGITNINLLDS----------------EDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILI 70 (156)
T ss_pred CCCeEEEEEeeccccccCC----------------CceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchh
Confidence 3458899988888764111 01577888866 44322 24444433478999998888754
Q ss_pred -CC--CceEEEEEEEecCCC---CccceEEEEeeee
Q 001250 420 -HS--AAEVHFFVKDSDVVG---SELIGTVAIPVEQ 449 (1114)
Q Consensus 420 -~~--~~~L~f~V~D~D~~g---ddfIGqa~IpL~e 449 (1114)
+. ++.|.|+|++.+..+ ...||.+.++|-+
T Consensus 71 ~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 71 SDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred hcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 22 589999999987644 4688888887754
No 199
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=90.98 E-value=1.3 Score=47.34 Aligned_cols=142 Identities=19% Similarity=0.281 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCccccccccccccccc
Q 001250 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1114)
Q Consensus 545 ~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t 624 (1114)
+..+.|..+|+.|++...+..|+- .+ .-.-|.+.|..+.+.||++|||- ++... + |
T Consensus 39 ~il~~Li~~l~k~~ef~IsVaFit--------~s---G~sll~~~L~d~~~Kgvkgkilt-s~Yln-----f-------T 94 (198)
T COG3886 39 KILPRLIDELEKADEFEISVAFIT--------ES---GLSLLFDLLLDLVNKGVKGKILT-SDYLN-----F-------T 94 (198)
T ss_pred hHHHHHHHHHhcCCeEEEEEEEee--------Cc---cHHHHHHHHHHHhcCCceEEEec-ccccC-----c-------c
Confidence 357899999999999999988742 22 23567788889999999999994 33221 1 1
Q ss_pred CcHHHHHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCCCc
Q 001250 625 HDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPL 704 (1114)
Q Consensus 625 ~d~~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l 704 (1114)
+....++.+.-.+|+|++.-.. ...+|-|-.|...+ ....|++|..||++.-.-+. |
T Consensus 95 dP~al~~Ll~~~nve~r~~~~~---------------~~~fH~KgYiFe~~-----~~~taiiGSsNlt~sALt~n-~-- 151 (198)
T COG3886 95 DPVALRKLLMLKNVELRVSTIG---------------SANFHTKGYIFEHN-----TGITAIIGSSNLTDSALTVN-E-- 151 (198)
T ss_pred CHHHHHHHHhhhccceEEEecC---------------ccccccceeEEEec-----ceEEEEEccchhhhhhcccC-H--
Confidence 2223445555567888763110 13566676664431 12689999999998644221 1
Q ss_pred ccccccccCCCCCCCcccCCCCCCCCCCee-EEEEEEeCHHHHHHHHHHHHHHH-Hhc
Q 001250 705 FRTLQTLHKDDYHNPTFTGNTTGCPREPWH-DLHSKIDGPAAYDVLTNFEERWR-KAS 760 (1114)
Q Consensus 705 ~~~l~~~~~~Dy~np~~~~~~~~~pr~PWH-Dvh~rVeGPAA~Dl~~~F~qRWn-~a~ 760 (1114)
-|- -+...-.|..|..+...|+.-|. +.+
T Consensus 152 ---------------------------Ewn~k~s~~~~g~i~~~~k~~f~r~~~~~~t 182 (198)
T COG3886 152 ---------------------------EWNLKVSSSKNGDIVKEVKVTFERQFQNKIT 182 (198)
T ss_pred ---------------------------HHHhhhccccccchHHHHHHHHHHHHHhhcc
Confidence 110 12333457899999999999997 443
No 200
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=90.39 E-value=29 Score=40.71 Aligned_cols=130 Identities=22% Similarity=0.265 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhcc-----cceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEE-----ecCCCcccccc
Q 001250 546 CWYDICNAISQAQ-----RLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLV-----WDDPTSRSILG 615 (1114)
Q Consensus 546 ~f~al~~AI~~Ak-----~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLv-----wD~~~s~~~lg 615 (1114)
.|+.+.+-|++|- ..|-|+ |.|-.. ...+.++|.++|+.|-+|.++| +|+-..
T Consensus 19 sf~~vv~fl~eAA~DP~V~aIk~T---------LYR~a~---~S~iv~aLi~AA~nGK~Vtv~vELkARFDEe~N----- 81 (352)
T PF13090_consen 19 SFDPVVDFLREAAEDPDVLAIKIT---------LYRVAS---NSPIVNALIEAAENGKQVTVLVELKARFDEENN----- 81 (352)
T ss_dssp -TCHHHHHHHHHCC-TTEEEEEEE---------ESSS-T---T-HHHHHHHHHHHTT-EEEEEESTTSSSTTCCC-----
T ss_pred ccHHHHHHHHHHhcCCCccEEEEE---------EEecCC---CCHHHHHHHHHHHcCCEEEEEEEEeccccHHHH-----
Confidence 5788888888884 456666 445443 5789999999999999999997 222111
Q ss_pred cccccccccCcHHHHHHHhcCCcEEEEc-cCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCC
Q 001250 616 YKMDGVMQTHDEETRRVFKHSSVKVLLC-PRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCD 694 (1114)
Q Consensus 616 ~k~~gvm~t~d~~~~~~~~h~gV~v~l~-P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~d 694 (1114)
-.+.+.|+.+||+|..- | .+--|-|+++|=-+..+ +=+..+++|=-|...
T Consensus 82 -----------i~Wa~~Le~aGv~ViyG~~-----------------glKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe 132 (352)
T PF13090_consen 82 -----------IHWAKRLEEAGVHVIYGVP-----------------GLKVHAKICLIVRREGG-GLRRYAHLGTGNYNE 132 (352)
T ss_dssp -----------CCCCHHHHHCT-EEEE--T-----------------T-EE--EEEEEEEEETT-EEEEEEEEESS-SST
T ss_pred -----------hHHHhhHHhcCeEEEcCCC-----------------ChhheeeEEEEEEEeCC-cEEEEEEEcCCCcCc
Confidence 12446788999999862 2 24579999998653222 223566665433322
Q ss_pred CcCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCH-HHHHHHHHHHH
Q 001250 695 GRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEE 754 (1114)
Q Consensus 695 gRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGP-AA~Dl~~~F~q 754 (1114)
. + -.-+-|+.+.-.-+ .+.|+...|..
T Consensus 133 ~--------------------------------T-Ar~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 133 K--------------------------------T-ARIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp T--------------------------------H-CCCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred c--------------------------------c-hhheecceeecCCHHHHHHHHHHHHH
Confidence 1 1 12346888777766 68899888854
No 201
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=89.99 E-value=1.1 Score=47.16 Aligned_cols=89 Identities=16% Similarity=0.254 Sum_probs=56.6
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEE--CCEEEE---eeeeec--C--CCCCeeceEEE
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVIS--N--SEDPVWQQHFY 415 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L--~g~~v~---RTrVI~--n--t~NPvWNE~F~ 415 (1114)
....+.|+|.++.+++...... ..|.|+++.| +++.+. .|+... + ...+.|||-..
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~---------------~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~ 70 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQS---------------FEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIE 70 (171)
T ss_pred ccccEEEEEEEeecCChHHhhc---------------cccEEEEEEEEECCEECcCceeccccccccCccccccccceEE
Confidence 4456899999999998543211 1688998876 444432 343221 2 33678999888
Q ss_pred EEecC--C--CceEEEEEEEecCCC----------CccceEEEEeee
Q 001250 416 VPVAH--S--AAEVHFFVKDSDVVG----------SELIGTVAIPVE 448 (1114)
Q Consensus 416 f~va~--~--~~~L~f~V~D~D~~g----------ddfIGqa~IpL~ 448 (1114)
|++.- . ++.|.|+|++....+ ...||.+.++|-
T Consensus 71 F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LF 117 (171)
T cd04012 71 FPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLF 117 (171)
T ss_pred CccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeE
Confidence 87542 2 588999999876532 245555555544
No 202
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=89.14 E-value=3.9 Score=43.68 Aligned_cols=126 Identities=10% Similarity=0.053 Sum_probs=68.0
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEE--CCEEEE--eeeeecCCCCCeeceEEEEE
Q 001250 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG--RTFVISNSEDPVWQQHFYVP 417 (1114)
Q Consensus 342 ~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L--~g~~v~--RTrVI~nt~NPvWNE~F~f~ 417 (1114)
+|=+...++|+|..+. .++.+.... ..-||++.| +++... +|.....+.++.|||-..|+
T Consensus 5 lwdi~~~friki~~~~-~~~~~~~~~---------------~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~ 68 (178)
T cd08399 5 LWDCDRKFRVKILGID-IPVLPRNTD---------------LTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFD 68 (178)
T ss_pred eEecCCCEEEEEEeec-ccCcCCCCc---------------eEEEEEEEEEECCeecccceeeccCCCCCccccccEECc
Confidence 3445556899998887 443331110 234666544 333221 55555557789999977777
Q ss_pred ec--CC--CceEEEEEEEecCCC--CccceEEEEeeeeeecCceeeeee--eeccCCCCCCCCCCeEEEEEEEecccc
Q 001250 418 VA--HS--AAEVHFFVKDSDVVG--SELIGTVAIPVEQIYSGGKVEGTY--PVLNGSGKPCKPGATLTLSIQYTPMER 487 (1114)
Q Consensus 418 va--~~--~~~L~f~V~D~D~~g--ddfIGqa~IpL~eL~sG~~id~W~--pLl~~~Gkp~k~~g~L~L~l~F~p~~~ 487 (1114)
+. +. .+.|.|+||+....+ ....|.. +.++-......-+|. .|+|.+|.-. .|...|.++-.|-+.
T Consensus 69 I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~wvn~~LFD~~~~Lr--~G~~~L~~W~~~~~~ 142 (178)
T cd08399 69 IKIKDLPKGALLNLQIYCGKAPALSSKKSAES--PSSESKGKHQLLYYVNLLLIDHRFLLR--TGEYVLHMWQISGKG 142 (178)
T ss_pred cccccCChhhEEEEEEEEEecCcccccccccc--cccccccccceEEEEEEEEEcCCCcee--cCCEEEEEecCCCcc
Confidence 54 32 489999999974321 1122211 111111112222453 4566666432 368888888766443
No 203
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=89.05 E-value=0.6 Score=52.86 Aligned_cols=125 Identities=15% Similarity=0.144 Sum_probs=77.8
Q ss_pred ceeeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 341 KVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 341 ~~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
.+.=..|.|.++++++++|.-.... +-.+-+.||++..+.+-.+||+|.....-=.|.|.|++.+..
T Consensus 45 ~~~s~tGiL~~H~~~GRGLr~~p~~-------------kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~ 111 (442)
T KOG1452|consen 45 RLVSSTGILYFHAYNGRGLRMTPQQ-------------KGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN 111 (442)
T ss_pred eeecccceEEEEEecccccccChhc-------------cCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc
Confidence 3334568899999999999743221 123579999999998776788877666666899999998763
Q ss_pred CCceEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEeccc
Q 001250 421 SAAEVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPME 486 (1114)
Q Consensus 421 ~~~~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~ 486 (1114)
...+.+-|+.|+. ..+++.=.--|.+..+.. ..-++-+.|. ..+.|++-|+|.|.+.+
T Consensus 112 -~~vl~~lvySW~pq~RHKLC~~g~l~~~~v~r-qspd~~~Al~------lePrgq~~~r~~~~Dp~ 170 (442)
T KOG1452|consen 112 -IEVLHYLVYSWPPQRRHKLCHLGLLEAFVVDR-QSPDRVVALY------LEPRGQPPLRLPLADPE 170 (442)
T ss_pred -ceeeeEEEeecCchhhccccccchhhhhhhhh-cCCcceeeee------cccCCCCceecccCChH
Confidence 3477888888887 334432221233332221 1112223331 12335777888876543
No 204
>PLN02352 phospholipase D epsilon
Probab=88.87 E-value=1.3 Score=56.14 Aligned_cols=63 Identities=22% Similarity=0.240 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccC-C-CCCchHHHHHHHHHHHHHhCCCeEEEEEe
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDL-G-ANNLIPMEIALKIADKIRAHERFAAYIVI 906 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~-~-a~N~I~~eIa~aLa~aira~~gf~V~IVl 906 (1114)
.+..+++.+||.+|||+|||+.=-|-+.-.. ..+. + .....+..|.+.|.+|+ .+||+|+|++
T Consensus 186 ~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L---~R~~~~~~p~~~g~~LgdLLk~KA--~eGV~VrLLv 250 (758)
T PLN02352 186 RKLWEDVYKAIEGAKHLIYIAGWSFNPKMVL---VRDPETDIPHARGVKLGELLKRKA--EEGVAVRVML 250 (758)
T ss_pred HHHHHHHHHHHHhhccEEEEEEEEecCCcee---ccCcccccccccchHHHHHHHHHH--HCCCEEEEEE
Confidence 5789999999999999999996444332100 0000 0 00123568888888875 4578898873
No 205
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=88.19 E-value=1.4 Score=46.06 Aligned_cols=68 Identities=19% Similarity=0.291 Sum_probs=47.3
Q ss_pred CCCcEEEEEE--CCEEEE---eeeeecCCCCCeeceEEEEEecCC----CceEEEEEEEecCCC-CccceEEEEeeee
Q 001250 382 TSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVPVAHS----AAEVHFFVKDSDVVG-SELIGTVAIPVEQ 449 (1114)
Q Consensus 382 tsDPYV~V~L--~g~~v~---RTrVI~nt~NPvWNE~F~f~va~~----~~~L~f~V~D~D~~g-ddfIGqa~IpL~e 449 (1114)
.+|.||++.| +++.+. .|..+.-+..+.|||-..|++.-. .+.|.|+|||.+..+ ...||.+.++|-+
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 3789999876 444332 555555567789999887776432 489999999987543 4577777777654
No 206
>PLN02270 phospholipase D alpha
Probab=85.72 E-value=3.4 Score=52.96 Aligned_cols=63 Identities=19% Similarity=0.174 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCC-CCCchHHHHHHHHHHHHHhCCCeEEEEEe
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLG-ANNLIPMEIALKIADKIRAHERFAAYIVI 906 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~-a~N~I~~eIa~aLa~aira~~gf~V~IVl 906 (1114)
....+...+||.+|||+|||.-=-|-+.-.. ..+.. ....=+..|.+.|.+ ++++||+|+|++
T Consensus 208 ~~cwedi~~AI~~Ar~~IyI~GW~~d~~i~L---vRd~~~p~~~~~~~LGeLLk~--KA~eGV~V~iLv 271 (808)
T PLN02270 208 HRCWEDVFDAITNAKHLIYITGWSVYTEISL---VRDSRRPKPGGDVTIGELLKK--KASEGVRVLLLV 271 (808)
T ss_pred hhhHHHHHHHHHhhhcEEEEEEeecCCCceE---ecCCCCCCCCCcchHHHHHHH--HhcCCCEEEEEE
Confidence 4567888999999999999985433332110 00000 000002356666666 457899999988
No 207
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=85.31 E-value=2.9 Score=42.52 Aligned_cols=67 Identities=22% Similarity=0.355 Sum_probs=43.8
Q ss_pred CcEEEEEE--CCEE----EEeeeeecCC-CCCeeceEEEEEec--CC--CceEEEEEEEecCCCC-----ccceEEEEee
Q 001250 384 DPYVTIAV--AGAV----VGRTFVISNS-EDPVWQQHFYVPVA--HS--AAEVHFFVKDSDVVGS-----ELIGTVAIPV 447 (1114)
Q Consensus 384 DPYV~V~L--~g~~----v~RTrVI~nt-~NPvWNE~F~f~va--~~--~~~L~f~V~D~D~~gd-----dfIGqa~IpL 447 (1114)
+.||++.| +++. +..|+.+.-+ .++.|||.+.|++. +. .+.|.|+|++.+.... ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 45666665 4433 3366666555 79999997777753 32 5899999999877443 5788888877
Q ss_pred eee
Q 001250 448 EQI 450 (1114)
Q Consensus 448 ~eL 450 (1114)
-+.
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 554
No 208
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=85.08 E-value=6.7 Score=41.05 Aligned_cols=103 Identities=16% Similarity=0.259 Sum_probs=68.1
Q ss_pred CCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC--------------CceEEEEEEEecCCC-CccceEEEEee
Q 001250 383 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--------------AAEVHFFVKDSDVVG-SELIGTVAIPV 447 (1114)
Q Consensus 383 sDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~--------------~~~L~f~V~D~D~~g-ddfIGqa~IpL 447 (1114)
+-..+-+.+.+++. +|+.+.-+.+|.++|+|.|++... ...|++.|.--|..+ ..++|.-.+.=
T Consensus 34 s~~~l~l~f~~QRF-~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldW 112 (156)
T PF15627_consen 34 STFTLHLHFRGQRF-RSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDW 112 (156)
T ss_pred eEEEEEEEecCceE-ecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehH
Confidence 44566677788886 999999999999999999998643 135777776666543 46777777765
Q ss_pred eeeec-Cc-eeeeeeeeccCCCCCCCCCCeEEEEEEEeccc
Q 001250 448 EQIYS-GG-KVEGTYPVLNGSGKPCKPGATLTLSIQYTPME 486 (1114)
Q Consensus 448 ~eL~s-G~-~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~ 486 (1114)
..+.. |. .+...+.|.+...+..-.-|.|.|++...|.-
T Consensus 113 R~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 113 RKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred HHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 55542 32 11344555554333112346888888877753
No 209
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=84.36 E-value=3.6 Score=43.36 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=57.3
Q ss_pred CCcEEEEEECCEEEEeeeeecC--CCCCeeceEEEEEecCCCceEEEEEEEecCCCCccceEEEEeeeeee
Q 001250 383 SDPYVTIAVAGAVVGRTFVISN--SEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIY 451 (1114)
Q Consensus 383 sDPYV~V~L~g~~v~RTrVI~n--t~NPvWNE~F~f~va~~~~~L~f~V~D~D~~gddfIGqa~IpL~eL~ 451 (1114)
...|++|.++++.+.+|+...- ...=.+||.|.+.+..--..|.++|+......+.+|+++.|||-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 5679999999999998876543 44556899999999887789999999988888999999999975443
No 210
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=83.92 E-value=1.8 Score=54.86 Aligned_cols=123 Identities=19% Similarity=0.211 Sum_probs=77.8
Q ss_pred ceeeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEE
Q 001250 341 KVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYV 416 (1114)
Q Consensus 341 ~~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f 416 (1114)
..-++.|.|++.+.+|.++..- ...||+..++. ...++|++|.++..|.||++|++
T Consensus 753 eSpl~ygflh~~vhsat~lkqs--------------------~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv 812 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQS--------------------RNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHV 812 (1112)
T ss_pred cCcccccceeeeeccccccccc--------------------cceeeehhhhhhccccccccceeeecccCCCCChhccc
Confidence 4457889999999999998732 56799887753 34469999999999999999999
Q ss_pred EecCCCceEEEEEEEecC-----------CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEecc
Q 001250 417 PVAHSAAEVHFFVKDSDV-----------VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1114)
Q Consensus 417 ~va~~~~~L~f~V~D~D~-----------~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~ 485 (1114)
++-... .+++...+.+. ..+...|+..+.+.--.... ..|+.-...- .+..+...|.|.+.
T Consensus 813 ~~~~sq-S~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~d--~d~~t~v~~~-----n~~~ve~~v~~sss 884 (1112)
T KOG4269|consen 813 PVIESQ-SSRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPHHD--ADWYTQVIDM-----NGIVVETSVKFSSS 884 (1112)
T ss_pred chhhcc-ccchhhhcccchHHHhhhccchhhcccccccccccCcccccc--ccCccChhhh-----cCcceeeeEEeccc
Confidence 986443 33355544443 12334555444443222111 1455433221 12467889999987
Q ss_pred cccccc
Q 001250 486 ERLSFY 491 (1114)
Q Consensus 486 ~~~~~~ 491 (1114)
+....-
T Consensus 885 s~Ss~~ 890 (1112)
T KOG4269|consen 885 STSSKR 890 (1112)
T ss_pred cccccC
Confidence 665443
No 211
>PF13918 PLDc_3: PLD-like domain
Probab=83.75 E-value=4.7 Score=43.02 Aligned_cols=58 Identities=22% Similarity=0.368 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcccEEEEEeeeeccCC------CCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCC
Q 001250 842 HTAYVKAIRSAQHFIYIENQYFIGSS------YNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGV 913 (1114)
Q Consensus 842 ~~AYl~aI~~Ak~fIYIENQYFi~~~------~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~ 913 (1114)
.+|.+..|..||+||||+===++|.. .-|+ .|-.||.+|+ =.+||+|++++-.|....
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP-------------~ID~ALR~AA-~~R~V~VRlLIS~W~ht~ 147 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWP-------------VIDDALRRAA-IERGVKVRLLISCWKHTD 147 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcch-------------hHHHHHHHHH-HHcCCeEEEEEeecCCCC
Confidence 57999999999999999844444431 1243 4556666653 257999999999997543
No 212
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=82.48 E-value=3 Score=53.36 Aligned_cols=122 Identities=13% Similarity=0.027 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchh
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 918 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~a 918 (1114)
+.......+||.+|||-|||..=..-+.-+. .++..-.+ ...|-+-|.++ |.+||+|+|+|=.-.+....-.
T Consensus 302 ~~~~edi~dAI~~Ar~~IyItgWwl~pel~L---~Rp~~~~~--~~rLdelLK~K--AeeGVrV~ilv~kdv~s~~~i~- 373 (887)
T KOG1329|consen 302 KKYWEDVADAIENARREIYITGWWLSPELYL---VRPPKGPN--DWRLDELLKRK--AEEGVRVLILVWKDVTSALGIN- 373 (887)
T ss_pred hhHHHHHHHHHHhhhhEEEEeccccCceEEE---EccCCCCC--ceEHHHHHHHH--HhCCcEEEEEEeccchhccccC-
Confidence 5678888999999999999975332221110 00100001 22344445553 5789999998854332110000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccc--cccCCceEEeccCCCceeCCCCCC
Q 001250 919 TQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNF--FCLGNREVIDQTDTSLSGNPTAPN 982 (1114)
Q Consensus 919 vq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f--~~L~~HsK~~ivDd~~~~~IGSAN 982 (1114)
-+++..+ ...+--.|+....|+.+-+- +--.-|+|+++||. .++.||---
T Consensus 374 ----S~~~k~~---------l~~lH~nV~vlr~P~~~~~~~~~~wtHHeK~VVVD~-~v~fvGGlD 425 (887)
T KOG1329|consen 374 ----SHYEKTR---------LFFLHPNVKVLRCPRHPGSGPTTLWTHHEKLVVVDQ-EVAFVGGLD 425 (887)
T ss_pred ----chhHHHH---------HhhcCCCeEEEECCCCcCCCCceEEecceEEEEEcc-eecccccee
Confidence 1111111 11223356665667544311 11234999999998 677877433
No 213
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=81.65 E-value=4.2 Score=43.19 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=31.8
Q ss_pred EeeeeecCCCCCeeceEEEEEecCC---CceEEEEEEEecCCC----CccceEEEEeeee
Q 001250 397 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVVG----SELIGTVAIPVEQ 449 (1114)
Q Consensus 397 ~RTrVI~nt~NPvWNE~F~f~va~~---~~~L~f~V~D~D~~g----ddfIGqa~IpL~e 449 (1114)
..|.|...+.+|.|+|+|.+.+... ...|.|++++..... +..+|-+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4788888899999999999998654 478999999866521 2577777777665
No 214
>PLN03008 Phospholipase D delta
Probab=81.15 E-value=5.1 Score=51.52 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=37.7
Q ss_pred hHHHHHHHHHhcccceEEEEEEEecceeEEeCCC-----CChHHHHHHHHHHH--hccCCEEEEEE
Q 001250 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDAS-----PALDCTLGELLRSK--SQEGVRVLLLV 604 (1114)
Q Consensus 546 ~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~-----~~~g~rL~dLLk~K--A~eGVrVrlLv 604 (1114)
...+.++||++|||.|||+-=-|-...+.+.... .-++..|.+.|.+| +.++-+|+|++
T Consensus 568 Iq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 568 IQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred HHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 4789999999999999996322211111111111 12456677777775 66788999986
No 215
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=79.32 E-value=3.1 Score=51.63 Aligned_cols=93 Identities=12% Similarity=0.088 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCc
Q 001250 885 EIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNR 964 (1114)
Q Consensus 885 eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~H 964 (1114)
.|++||.+|+.++..|.|.|=+=..=|.. +. ++ +.++|.++|+++.| ++.++-+|
T Consensus 385 pIV~ALi~AA~nGKqVtvlVELkARFDEE---~N----I~------------WAk~LE~AGvhVvy------G~~glKtH 439 (696)
T COG0855 385 PIVRALIDAAENGKQVTVLVELKARFDEE---AN----IH------------WAKRLERAGVHVVY------GVVGLKTH 439 (696)
T ss_pred HHHHHHHHHHHcCCeEEEEEEEhhhcChh---hh----hH------------HHHHHHhCCcEEEe------cccceeee
Confidence 79999999998887766666444333321 11 22 34679999999875 55678889
Q ss_pred eEEeccCC------CceeCCCCCCCCcCCCCCCCCcceEEEEEcCc
Q 001250 965 EVIDQTDT------SLSGNPTAPNTPERSMEGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus 965 sK~~ivDd------~~~~~IGSANiN~RSM~G~rDsEIav~i~dp~ 1004 (1114)
+|+..|-- .+.+-+|+-|.|..+-+ .=|.+++..-|++
T Consensus 440 AKm~lVvRrE~~~lrrY~HlGTGNYn~~TAr--iYTD~sl~Tad~~ 483 (696)
T COG0855 440 AKMLLVVRREGGKLRRYVHLGTGNYNPKTAR--LYTDLSLLTADPE 483 (696)
T ss_pred eeEEEEEEecCCcEEEEEEecCCCCCcccee--eeeechhccCCHH
Confidence 99987632 24678899999998886 6666666654443
No 216
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=77.47 E-value=14 Score=35.50 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=58.7
Q ss_pred CCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeee
Q 001250 383 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPV 462 (1114)
Q Consensus 383 sDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pL 462 (1114)
++-.|.+.++++.++.|.-.. ..+..|+|+|.|.+.. ...|+|.|+=.|. ..+.|-..+-|++...+. -.+|
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~--RslCav~~lrLEd~~~~~----~~~l 80 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW--RSLCAVKFLKLEDERHEV----QLDM 80 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc--hhhhhheeeEhhhhcccc----eecc
Confidence 577899999999999886543 3567899999999964 4578888876655 456777777777744321 2233
Q ss_pred ccCCCCCCCCCCeEEEEEEE
Q 001250 463 LNGSGKPCKPGATLTLSIQY 482 (1114)
Q Consensus 463 l~~~Gkp~k~~g~L~L~l~F 482 (1114)
.+.|.+...+.|
T Consensus 81 --------epqg~l~~ev~f 92 (98)
T cd08687 81 --------EPQLCLVAELTF 92 (98)
T ss_pred --------ccccEEEEEEEe
Confidence 233567777776
No 217
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=77.02 E-value=11 Score=37.04 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=52.4
Q ss_pred EEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC--------CceEEEEEEEecCCCCccceEEEEeeeeeec--Cce
Q 001250 386 YVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--------AAEVHFFVKDSDVVGSELIGTVAIPVEQIYS--GGK 455 (1114)
Q Consensus 386 YV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~--------~~~L~f~V~D~D~~gddfIGqa~IpL~eL~s--G~~ 455 (1114)
||++++-.-....|.|+. +.+|..|-+-.+.|... ...+.++++.---...+.||.+.|++.++.. |..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 566666554444777776 89999998777777644 2578888876543345699999999999984 345
Q ss_pred eeeeeeeccCCCCCCCCCCeEEEEEEEe
Q 001250 456 VEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1114)
Q Consensus 456 id~W~pLl~~~Gkp~k~~g~L~L~l~F~ 483 (1114)
+.+...|.+.+|+.. |.|.+.++..
T Consensus 81 i~~~~~l~g~~~~~~---g~l~y~~rl~ 105 (107)
T PF11618_consen 81 IHGSATLVGVSGEDF---GTLEYWIRLR 105 (107)
T ss_dssp EEEEEEE-BSSS-TS---EEEEEEEEEE
T ss_pred EEEEEEEeccCCCeE---EEEEEEEEec
Confidence 778888888888754 5888777753
No 218
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=75.35 E-value=5.3 Score=48.89 Aligned_cols=61 Identities=30% Similarity=0.425 Sum_probs=50.1
Q ss_pred EEEEeeeeecCCCCCeeceEEEEEecCC-CceEEEEEEEecCC-----CCccceEEEEeeeeeecCc
Q 001250 394 AVVGRTFVISNSEDPVWQQHFYVPVAHS-AAEVHFFVKDSDVV-----GSELIGTVAIPVEQIYSGG 454 (1114)
Q Consensus 394 ~~v~RTrVI~nt~NPvWNE~F~f~va~~-~~~L~f~V~D~D~~-----gddfIGqa~IpL~eL~sG~ 454 (1114)
..++||.++.+.+||.|-+.|.+...-. ...|+|+|.|-+.. ..+|+|++.--++++.+-.
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~ 106 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS 106 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh
Confidence 4456999999999999999998876544 57899999997763 4789999999999887543
No 219
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=73.78 E-value=14 Score=46.20 Aligned_cols=92 Identities=21% Similarity=0.246 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCccccccccccccccc
Q 001250 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1114)
Q Consensus 545 ~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t 624 (1114)
+.|+.+.+-|++|-.-=....- ++.|.|-+. ...+.++|.++|+.|-+|-+|| - +| .-
T Consensus 352 eSF~~Vv~fl~qAA~DP~VLAI----KqTLYRt~~---dSpIV~ALi~AA~nGKqVtvlV-E---------Lk-----AR 409 (696)
T COG0855 352 ESFEPVVEFLRQAAADPDVLAI----KQTLYRTSK---DSPIVRALIDAAENGKQVTVLV-E---------LK-----AR 409 (696)
T ss_pred hhhHHHHHHHHHhhcCCCeEEE----EEEEEecCC---CCHHHHHHHHHHHcCCeEEEEE-E---------Eh-----hh
Confidence 4788899999998642111110 244566553 5789999999999999999997 1 00 11
Q ss_pred CcH----HHHHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcC
Q 001250 625 HDE----ETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDA 674 (1114)
Q Consensus 625 ~d~----~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~ 674 (1114)
.|+ .+.+.+..+||+|++- + ..+--|-|+++|=-
T Consensus 410 FDEE~NI~WAk~LE~AGvhVvyG---------~-------~glKtHAKm~lVvR 447 (696)
T COG0855 410 FDEEANIHWAKRLERAGVHVVYG---------V-------VGLKTHAKMLLVVR 447 (696)
T ss_pred cChhhhhHHHHHHHhCCcEEEec---------c-------cceeeeeeEEEEEE
Confidence 122 3556677899999862 0 12568999988854
No 220
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=72.10 E-value=18 Score=34.73 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=34.5
Q ss_pred CCcEEEEEE--CCEEEE---eeeeecCCCCCeeceEEEEEecC--C--CceEEEEEEEec
Q 001250 383 SDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVPVAH--S--AAEVHFFVKDSD 433 (1114)
Q Consensus 383 sDPYV~V~L--~g~~v~---RTrVI~nt~NPvWNE~F~f~va~--~--~~~L~f~V~D~D 433 (1114)
+|.||++.| +++... .|..+.-...+.|||-..|++.- . .+.|.|+|++..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 478998876 444332 45544445668999988887542 2 488999999854
No 221
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=69.65 E-value=11 Score=40.79 Aligned_cols=37 Identities=19% Similarity=0.543 Sum_probs=30.5
Q ss_pred EeeeeecCCCCCeeceEEEEEecCC---CceEEEEEEEec
Q 001250 397 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSD 433 (1114)
Q Consensus 397 ~RTrVI~nt~NPvWNE~F~f~va~~---~~~L~f~V~D~D 433 (1114)
.+|-|...+.+|.|||++.+.+.-. ...|.|+++...
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S 94 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCS 94 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEee
Confidence 4888999899999999999998643 578999887644
No 222
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=69.35 E-value=6.2 Score=46.48 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecC
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPM 908 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~ 908 (1114)
.+..+...+.|..||+.|.|.+=|.--. ..|++..|..++..++.++|-|++-.
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasLYlG~~----------------E~elv~cl~~aL~~~~~L~v~iLlD~ 91 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASLYLGKL----------------ERELVDCLSNALEKNPSLKVSILLDF 91 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeeeccchh----------------HHHHHHHHHHHhccCCCcEEEeehhh
Confidence 3678899999999999999999988553 24899999999999999999998864
No 223
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=66.93 E-value=21 Score=38.28 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=32.7
Q ss_pred EEEeeeeecCCCCCeeceEEEEEecCC---CceEEEEEEEecC
Q 001250 395 VVGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDV 434 (1114)
Q Consensus 395 ~v~RTrVI~nt~NPvWNE~F~f~va~~---~~~L~f~V~D~D~ 434 (1114)
..+.|.|...+.+|.|+|+|.+.+.-. ...|.|+.++.+.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 345888998999999999999998644 4689999998654
No 224
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=65.85 E-value=15 Score=39.98 Aligned_cols=51 Identities=12% Similarity=0.281 Sum_probs=36.7
Q ss_pred EeeeeecCCCCCeeceEEEEEecCC---CceEEEEEEEecCC--CC---ccceEEEEee
Q 001250 397 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVV--GS---ELIGTVAIPV 447 (1114)
Q Consensus 397 ~RTrVI~nt~NPvWNE~F~f~va~~---~~~L~f~V~D~D~~--gd---dfIGqa~IpL 447 (1114)
.+|-|...+.+|.|+|++.+.+.-. ...|.|+++..... +| ..+|-+.+||
T Consensus 55 ~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 55 YKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred EEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 4888888899999999999988633 58899999765431 12 3455555554
No 225
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=65.01 E-value=3.7 Score=47.82 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCc
Q 001250 885 EIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNR 964 (1114)
Q Consensus 885 eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~H 964 (1114)
.|+.+|.+|++.+..|.|.| =...-.+ +.+.+ +| .++|.++|+++.| ++-+|-+|
T Consensus 51 ~iv~aLi~AA~nGK~Vtv~v--ELkARFD-Ee~Ni----~W------------a~~Le~aGv~Viy------G~~glKvH 105 (352)
T PF13090_consen 51 PIVNALIEAAENGKQVTVLV--ELKARFD-EENNI----HW------------AKRLEEAGVHVIY------GVPGLKVH 105 (352)
T ss_dssp HHHHHHHHHHHTT-EEEEEE--STTSSST-TCCCC----CC------------CHHHHHCT-EEEE--------TT-EE-
T ss_pred HHHHHHHHHHHcCCEEEEEE--EEecccc-HHHHh----HH------------HhhHHhcCeEEEc------CCCChhhe
Confidence 79999999988877655555 4333111 11211 23 3569999999865 33456679
Q ss_pred eEEeccCC------CceeCCCCCCCCcCCCCCCCCcceEEEEEcCcc
Q 001250 965 EVIDQTDT------SLSGNPTAPNTPERSMEGTRDTEIAMGAYQPEY 1005 (1114)
Q Consensus 965 sK~~ivDd------~~~~~IGSANiN~RSM~G~rDsEIav~i~dp~~ 1005 (1114)
+|+..|-- ...+-+|+-|.|...-. .=|.+++..-+++.
T Consensus 106 aK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr--~YtD~~l~Ta~~~i 150 (352)
T PF13090_consen 106 AKICLIVRREGGGLRRYAHLGTGNYNEKTAR--IYTDLSLFTADPEI 150 (352)
T ss_dssp -EEEEEEEEETTEEEEEEEEESS-SSTTHCC--CEEEEEEEE--HHH
T ss_pred eeEEEEEEEeCCcEEEEEEEcCCCcCccchh--heecceeecCCHHH
Confidence 99987632 24678899999999887 77888887766653
No 226
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=63.73 E-value=17 Score=38.51 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=34.7
Q ss_pred eeeecCCCCCeeceEEEEEecCC---CceEEEEEEEecCCC------CccceEEEEeeee
Q 001250 399 TFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDVVG------SELIGTVAIPVEQ 449 (1114)
Q Consensus 399 TrVI~nt~NPvWNE~F~f~va~~---~~~L~f~V~D~D~~g------ddfIGqa~IpL~e 449 (1114)
|.++....+|.|+|+|.+.+... ...|.|++++..... ...+|-+.+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 33444449999999999998543 478999998866532 3456666666543
No 227
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=56.95 E-value=78 Score=36.64 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=50.0
Q ss_pred hCCCeEEEEEecCCC-CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCceEEecc-CC-
Q 001250 896 AHERFAAYIVIPMWP-EGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQT-DT- 972 (1114)
Q Consensus 896 a~~gf~V~IVlP~~P-eg~p~~~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~HsK~~iv-Dd- 972 (1114)
+.....|.|++=|.+ ||.+ .+|+.+ ...+-..+.+.++...|.- -....|+|+.+- .+
T Consensus 32 ~~~~~~I~LivGM~~~eGis---------~~~~~~----~~~L~~~~~~~~~g~vYv~------~~~~~HgKlY~f~k~g 92 (296)
T PF09565_consen 32 EYHILKIKLIVGMYYYEGIS---------IPQHNA----LCKLNDFLQENGIGEVYVV------PDPPYHGKLYIFSKNG 92 (296)
T ss_pred hCCCcceEEEEeccccCCcC---------HHHHHH----HHHHHHHhhhcCCceEEEe------CCCCcccEEEEEecCC
Confidence 456778889999977 4642 122222 3333344556665443211 122359999776 21
Q ss_pred -CceeCCCCCCCCc-CCCCCCCCcceEEEEEcC
Q 001250 973 -SLSGNPTAPNTPE-RSMEGTRDTEIAMGAYQP 1003 (1114)
Q Consensus 973 -~~~~~IGSANiN~-RSM~G~rDsEIav~i~dp 1003 (1114)
..-++|||||+-. =.+. ++-.| ++...|+
T Consensus 93 ~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~ 123 (296)
T PF09565_consen 93 KPFRAYIGSANFSQINGFT-RRQYE-AMVTCDP 123 (296)
T ss_pred CceEEEEeecccccccccc-cccee-EEEecCh
Confidence 2357999999988 2222 37788 6666555
No 228
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=55.77 E-value=43 Score=36.11 Aligned_cols=40 Identities=8% Similarity=0.187 Sum_probs=32.6
Q ss_pred EEEeeeeecCCCCCeeceEEEEEecCC---CceEEEEEEEecC
Q 001250 395 VVGRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDV 434 (1114)
Q Consensus 395 ~v~RTrVI~nt~NPvWNE~F~f~va~~---~~~L~f~V~D~D~ 434 (1114)
..+.|.|...+.+|.|+|++.+.+.-. ...|.|+.++...
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc 98 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSC 98 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeecc
Confidence 346888998999999999999987643 4789999998653
No 229
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=52.87 E-value=57 Score=37.45 Aligned_cols=123 Identities=13% Similarity=0.048 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchh
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 918 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~a 918 (1114)
.+|.+...+.|++|++-|=|.-==|.-. +|..-|.+|. .+++|-|||+|-...
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD~------------------dIf~DLleAa-~kR~VpVYiLLD~~~-------- 185 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTDV------------------DIFCDLLEAA-NKRGVPVYILLDEQN-------- 185 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeeccccH------------------HHHHHHHHHH-HhcCCcEEEEechhc--------
Confidence 4799999999999999999998777643 6888888875 367899999987532
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCcccccc-------CCceEEeccCCCceeCCCCCCCCcCCCCCC
Q 001250 919 TQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCL-------GNREVIDQTDTSLSGNPTAPNTPERSMEGT 991 (1114)
Q Consensus 919 vq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L-------~~HsK~~ivDd~~~~~IGSANiN~RSM~G~ 991 (1114)
++.++ .|+.-..--...|+ .+.++- ..-..|||- ..++|.+++|. ..++-||--+.--|-.
T Consensus 186 ~~~Fl-----~Mc~~~~v~~~~~~--nmrVRs--v~G~~y~~rsg~k~~G~~~eKF~lvD~-~~V~~GSYSFtWs~~~-- 253 (284)
T PF07894_consen 186 LPHFL-----EMCEKLGVNLQHLK--NMRVRS--VTGCTYYSRSGKKFKGQLKEKFMLVDG-DKVISGSYSFTWSSSR-- 253 (284)
T ss_pred ChHHH-----HHHHHCCCChhhcC--CeEEEE--ecCCeeecCCCCeeeCcccceeEEEec-ccccccccceeecccc--
Confidence 22222 12211111111111 122210 011122221 24789999998 4568898776655544
Q ss_pred CCcceEEEE
Q 001250 992 RDTEIAMGA 1000 (1114)
Q Consensus 992 rDsEIav~i 1000 (1114)
.|.-+...+
T Consensus 254 ~~r~~~~~~ 262 (284)
T PF07894_consen 254 VHRNLVTVL 262 (284)
T ss_pred cccceeEEE
Confidence 455455544
No 230
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.72 E-value=4.8 Score=50.40 Aligned_cols=94 Identities=12% Similarity=0.015 Sum_probs=62.0
Q ss_pred CCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEEEEEEEecCC-CCccceEEEEeeeeeec-Cceeeeee
Q 001250 383 SDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYS-GGKVEGTY 460 (1114)
Q Consensus 383 sDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~s-G~~id~W~ 460 (1114)
.|||+.|.+.-+..+.+.+...+.+|.|+|+|.+.+. ....+.|.|+..... .+.+.-++.+-.++++. ....+.|+
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 6999999998877767777778999999999999954 455777888776432 24444455555555442 12345788
Q ss_pred eeccCCCCCCCCCCeEEEEEEEecc
Q 001250 461 PVLNGSGKPCKPGATLTLSIQYTPM 485 (1114)
Q Consensus 461 pLl~~~Gkp~k~~g~L~L~l~F~p~ 485 (1114)
.+. +. |++...+.++-.
T Consensus 107 ~~~-~~-------g~~~~~~~~~~~ 123 (694)
T KOG0694|consen 107 LIE-EL-------GTLLKPAALTGT 123 (694)
T ss_pred ccc-cc-------cceeeeecccCc
Confidence 852 33 355555555443
No 231
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=49.01 E-value=17 Score=43.50 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=35.0
Q ss_pred cceEEEEeeee-eecCceeeeeeeeccCCCCCCCCCCeEEEEEEEecc
Q 001250 439 LIGTVAIPVEQ-IYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1114)
Q Consensus 439 fIGqa~IpL~e-L~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~ 485 (1114)
++|.+.||++. +..|...+.|+++.+...+..+ .+.| |+++|...
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~~-~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSVG-EGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCcC-cceE-EEEEeeec
Confidence 48999999999 6677788999999987766554 3566 77777654
No 232
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=48.46 E-value=33 Score=37.85 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecC
Q 001250 838 DMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPM 908 (1114)
Q Consensus 838 e~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~ 908 (1114)
...|.+-..++|++|++-|||....= . -.++...|.+|. .+|+.|+|++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~~-----------------~-l~~l~~~L~~a~--~rGV~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPPE-----------------F-LEELRDELEEAV--DRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-GG-----------------G-HHHHHHHHHHHH--HTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCHH-----------------H-HHHHHHHHHHHH--HCCCEEEEEEeC
Confidence 46899999999999999999985421 1 126777777765 568999999887
No 233
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.50 E-value=32 Score=41.53 Aligned_cols=12 Identities=67% Similarity=1.118 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCC
Q 001250 47 PAYPYQPSACPP 58 (1114)
Q Consensus 47 ~~~~~~~~~~~~ 58 (1114)
|+||+|-++-||
T Consensus 453 p~~P~~~~pppP 464 (483)
T KOG2236|consen 453 PAYPHQQSPPPP 464 (483)
T ss_pred CCCccccCCCCC
Confidence 577888887666
No 234
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=45.57 E-value=42 Score=42.86 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=6.3
Q ss_pred cceEEEEeeeeee
Q 001250 439 LIGTVAIPVEQIY 451 (1114)
Q Consensus 439 fIGqa~IpL~eL~ 451 (1114)
|+|...+|-++|.
T Consensus 707 flgS~rmpyeeik 719 (1102)
T KOG1924|consen 707 FLGSFRMPYEEIK 719 (1102)
T ss_pred HHhhccCCHHHHH
Confidence 4555555544443
No 235
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=44.36 E-value=80 Score=35.75 Aligned_cols=127 Identities=17% Similarity=0.258 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeee-cCCCccccccCC
Q 001250 885 EIALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFS-PQDYLNFFCLGN 963 (1114)
Q Consensus 885 eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~-P~~Yl~f~~L~~ 963 (1114)
.+..||.+.++ .|++|+. .| + +. +|+ +.=.+++++.||++.-. |.++.
T Consensus 5 ~~~~Av~~Hl~--aG~~V~a-t~---~------AA--------~Ti----~Ddl~~V~~~GI~I~~~~p~~~~------- 53 (254)
T PF08735_consen 5 PFTRAVKEHLK--AGLRVYA-TP---D------AA--------LTI----HDDLERVRAMGIEITEEPPAGAV------- 53 (254)
T ss_pred hHHHHHHHHHH--CCCcEEE-cH---H------HH--------hhh----ccCHHHHHhCCeEEEeccCCCCc-------
Confidence 35677777664 4788887 11 1 00 121 23356788889987532 22333
Q ss_pred ceEEeccCCCce-eCCCCCCCCcCCCCCCCCcceEEEEEcCcchhhcccCCCchhHHHHHHHHHHHHh--CCCccccCC-
Q 001250 964 REVIDQTDTSLS-GNPTAPNTPERSMEGTRDTEIAMGAYQPEYTWARMKRHPYGQIYGYRMSLWAEHL--GYIEDCFGQ- 1039 (1114)
Q Consensus 964 HsK~~ivDd~~~-~~IGSANiN~RSM~G~rDsEIav~i~dp~~~~a~~~~~~~g~i~~lR~~Lw~EHL--G~~~~~f~~- 1039 (1114)
+-.+..+|-..| .++.+++++.-.. .+++.+.|-.+. |..-=+.+|.++|+|.| |...+.|..
T Consensus 54 ~i~l~D~D~~~~~~~l~~fg~~~p~~------~vavAvQDHG~~-------p~~SnR~~RF~~~~~~L~~g~~~~~~~y~ 120 (254)
T PF08735_consen 54 PIELGDVDPEALRGALSAFGLELPFD------VVAVAVQDHGFS-------PGQSNRIFRFELWREFLEEGGRPESFVYA 120 (254)
T ss_pred ceeeccCCHHHHHHHHHHcCCCCCcc------eeEEEecccCCC-------CCCccHHHHHHHHHHHHhcCCCHHHeeec
Confidence 222222332222 3445666553322 277777654322 22223668999999999 333344544
Q ss_pred CcchHHHHHHHHHHHh
Q 001250 1040 PETLECVRKVRSVGEN 1055 (1114)
Q Consensus 1040 p~sle~v~~v~~~ae~ 1055 (1114)
.+.++.+.|++++++.
T Consensus 121 ~~~P~~~TRm~av~~~ 136 (254)
T PF08735_consen 121 DDPPPYFTRMRAVRES 136 (254)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 4445668888777654
No 236
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=34.08 E-value=2.2e+02 Score=33.60 Aligned_cols=112 Identities=11% Similarity=0.137 Sum_probs=73.4
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCC-CC-eeceEEEEEecCCCceE
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSE-DP-VWQQHFYVPVAHSAAEV 425 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~-NP-vWNE~F~f~va~~~~~L 425 (1114)
.|.|+|.+-.++... -..|+.+..+...+ +|..+.-+. +- .=.|...+.+..-..+|
T Consensus 59 ~LLVeI~EI~~i~k~--------------------khiyIef~~Gr~d~-TT~~IpTsKK~RI~IqqRV~IkIRQcDnTL 117 (508)
T PTZ00447 59 YLLVKINEIFNINKY--------------------KHIYIIFSTDKYDF-TTDEIPTNKKNRIHIDQRVDIKIRQCDETL 117 (508)
T ss_pred eEEEEehhhhccccc--------------------eeEEEEEEcCceEE-EccccccCcCceEEEeeeeeeeeeecCceE
Confidence 378888887776522 35699999888776 664443322 22 22344555555556789
Q ss_pred EEEEEEecCCCCccceEEEEeeee-eecC-ceeeeeeeeccCCCCCCCCCCeEEEEEEEeccc
Q 001250 426 HFFVKDSDVVGSELIGTVAIPVEQ-IYSG-GKVEGTYPVLNGSGKPCKPGATLTLSIQYTPME 486 (1114)
Q Consensus 426 ~f~V~D~D~~gddfIGqa~IpL~e-L~sG-~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~ 486 (1114)
++.|+-....+..-||.+.|.+.+ +..+ -.-+.||-+. ++|+. ..++.|.|.-..
T Consensus 118 kI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnkWy~c~-kDGq~-----~cRIqLSFhKL~ 174 (508)
T PTZ00447 118 RVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNEWFVCF-KDGQE-----ICKVQMSFYKIQ 174 (508)
T ss_pred EEEEEeccccceeEEEEEEecccHHHHhccCCccceEEEe-cCCce-----eeeEEEEehhhh
Confidence 999988888888999999999853 4433 2345899994 67764 346667766543
No 237
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=31.14 E-value=1.8e+02 Score=35.75 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=12.2
Q ss_pred cccccccccCCCCCCCcccccCCCch
Q 001250 114 YPYAQAQSSQDHYPFPETTAQLPSGV 139 (1114)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (1114)
+.-.|+|+| |-||+-.|.-.|-|+
T Consensus 466 Pg~~s~~~s--~~P~q~s~~~~pp~~ 489 (554)
T KOG0119|consen 466 PGMQSAQSS--SLPQQASTTSIPPGD 489 (554)
T ss_pred CCccccccc--cCCcccccccCCccc
Confidence 333444444 345555566666653
No 238
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.37 E-value=2.8e+02 Score=31.81 Aligned_cols=32 Identities=41% Similarity=0.599 Sum_probs=26.9
Q ss_pred cccCCCCCCCCCCCCCCCCCCcccccCCCccc
Q 001250 85 YPYEHPAPVSSSMPQTPQHSSSFEYFPHPYPY 116 (1114)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (1114)
-++..|+|+-||.+..|.|+.+|.+-|-|-|+
T Consensus 246 a~~nnP~p~ySst~~ap~ps~f~~~~P~~qP~ 277 (338)
T KOG0917|consen 246 APANNPAPVYSSTGVAPNPSTFFTIQPTPQPI 277 (338)
T ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 35889999999999999999988887766444
No 239
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=27.46 E-value=1.2e+02 Score=33.81 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=32.4
Q ss_pred HHHHHHHHhcc---cceEEEEEEEecceeEEeCCCC-ChHHHHHHHHHHHhccCCE-EEEEE-ecC
Q 001250 548 YDICNAISQAQ---RLIYITGWSVWHKVKLVRDASP-ALDCTLGELLRSKSQEGVR-VLLLV-WDD 607 (1114)
Q Consensus 548 ~al~~AI~~Ak---~~I~I~gW~~~p~i~L~Rdd~~-~~g~rL~dLLk~KA~eGVr-VrlLv-wD~ 607 (1114)
+.+.++|+.|+ ..++|.| |+.++.. .--.-|..||+-++++||+ |+|=+ -|.
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~G--------LlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DG 71 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMG--------LLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDG 71 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEE--------EESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-S
T ss_pred HHHHHHHHHHHhcCCeEEEEE--------EecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 56667777776 4899988 5677652 2346788899999999986 54443 353
No 240
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=27.10 E-value=2.7e+02 Score=35.09 Aligned_cols=113 Identities=12% Similarity=0.171 Sum_probs=71.6
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCceEEE
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAEVHF 427 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L~f 427 (1114)
.|+|.|.+..+|+..-.+. =-||++.+.|.+. +|--. ...-|.|.-.=.|...|+...+.+
T Consensus 342 smevvvmevqglksvapnr-----------------ivyctmevegekl-qtdqa-easkp~wgtqgdfstthplpvvkv 402 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPNR-----------------IVYCTMEVEGEKL-QTDQA-EASKPKWGTQGDFSTTHPLPVVKV 402 (1218)
T ss_pred eeeEEEeeeccccccCCCe-----------------eEEEEEEeccccc-ccchh-hhcCCCCCcCCCcccCCCCceeEE
Confidence 5899999999998553321 2499999999876 55322 256799998777778888777777
Q ss_pred EEEEecC----CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEE
Q 001250 428 FVKDSDV----VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQY 482 (1114)
Q Consensus 428 ~V~D~D~----~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F 482 (1114)
.++-... +.|.-+|++.|.-..= ......|+.+.-++..+- ..-+|+|-++.
T Consensus 403 klftestgvlaledkelgrvil~ptpn--s~ks~ewh~mtvpknsqd-qdlkiklavrm 458 (1218)
T KOG3543|consen 403 KLFTESTGVLALEDKELGRVILQPTPN--SAKSPEWHTMTVPKNSQD-QDLKIKLAVRM 458 (1218)
T ss_pred EEEeecceeEEeechhhCeEEEecCCC--CcCCccceeeecCCCCcC-ccceEEEEEec
Confidence 7665443 4577899887742211 122346887754443322 22345555553
No 241
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=26.04 E-value=1.3e+02 Score=35.14 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=14.1
Q ss_pred cccccCCCCCCCCCCCCCCCC
Q 001250 83 LLYPYEHPAPVSSSMPQTPQH 103 (1114)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ 103 (1114)
.+-|+-.|.|-+.||-..||-
T Consensus 314 h~NpaffpPP~~~s~GppP~~ 334 (498)
T KOG4849|consen 314 HNNPAFFPPPQLGSMGPPPQM 334 (498)
T ss_pred ccCcccCCCCCcCcCCCCCCC
Confidence 445666677778888766653
No 242
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=24.44 E-value=2.3e+02 Score=31.90 Aligned_cols=81 Identities=14% Similarity=0.268 Sum_probs=49.2
Q ss_pred cccccccCcCCCCCCCCCCCCCCCcccCCeeEEcccCCCCCCCCCceeecCCccccchhhHHHHHHHHH--hcccceEEE
Q 001250 487 RLSFYHRGVGEGPDYNGVPGTYFPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAIS--QAQRLIYIT 564 (1114)
Q Consensus 487 ~~~~~~~GV~~~~~~~GVp~t~~P~r~Gn~V~ly~Dg~~~~~~~~~~~~~~g~~y~~g~~f~al~~AI~--~Ak~~I~I~ 564 (1114)
+...|++|+..+ .|=....|+.+|.- -..+.||. .++.+|.- +--+.|||
T Consensus 134 e~~fWqrGiSaC----AVCDGaapifrnk~---------------laVIGGGD--------sA~EEA~fLtkyaskVyi- 185 (322)
T KOG0404|consen 134 EGEFWQRGISAC----AVCDGAAPIFRNKP---------------LAVIGGGD--------SAMEEALFLTKYASKVYI- 185 (322)
T ss_pred cchHHhcccchh----hcccCcchhhcCCe---------------eEEEcCcH--------HHHHHHHHHHhhccEEEE-
Confidence 344899999875 23344555554432 22233332 34544432 22355665
Q ss_pred EEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCC
Q 001250 565 GWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPT 609 (1114)
Q Consensus 565 gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~ 609 (1114)
|.|.+. .|-..+..++|++.++|-|+ |+...
T Consensus 186 ---------i~Rrd~----fRAs~~Mq~ra~~npnI~v~-~nt~~ 216 (322)
T KOG0404|consen 186 ---------IHRRDH----FRASKIMQQRAEKNPNIEVL-YNTVA 216 (322)
T ss_pred ---------EEEhhh----hhHHHHHHHHHhcCCCeEEE-echhh
Confidence 356554 67788899999999999999 88654
No 243
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=22.76 E-value=3.6e+02 Score=36.69 Aligned_cols=7 Identities=14% Similarity=-0.121 Sum_probs=3.0
Q ss_pred cCCCCCc
Q 001250 312 DSSNHLV 318 (1114)
Q Consensus 312 ~ssn~~p 318 (1114)
.|.+|+|
T Consensus 1580 ~~~~ysp 1586 (1605)
T KOG0260|consen 1580 TSPSYSP 1586 (1605)
T ss_pred CCCCCCC
Confidence 3444443
No 244
>PF13289 SIR2_2: SIR2-like domain
Probab=22.37 E-value=2.6e+02 Score=27.47 Aligned_cols=64 Identities=23% Similarity=0.441 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHH----hccCCEEEEEEecCCCcccccccccccc
Q 001250 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSK----SQEGVRVLLLVWDDPTSRSILGYKMDGV 621 (1114)
Q Consensus 546 ~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~K----A~eGVrVrlLvwD~~~s~~~lg~k~~gv 621 (1114)
.|...+.++..++..|+| ||++. | ..+..+|.+. ....-++++++.+..
T Consensus 75 ~~~~~l~~~l~~~~~lfi-Gys~~-------D------~~i~~~l~~~~~~~~~~~~~~~~v~~~~~------------- 127 (143)
T PF13289_consen 75 WFPNFLRSLLRSKTLLFI-GYSFN-------D------PDIRQLLRSALENSGKSRPRHYIVIPDPD------------- 127 (143)
T ss_pred HHHHHHHHHHcCCCEEEE-EECCC-------C------HHHHHHHHHHHHhccCCCccEEEEEcCCc-------------
Confidence 466777777777777775 99753 2 2344444443 222346777764443
Q ss_pred cccCcHHHHHHHhcCCcEE
Q 001250 622 MQTHDEETRRVFKHSSVKV 640 (1114)
Q Consensus 622 m~t~d~~~~~~~~h~gV~v 640 (1114)
++..++++++.||++
T Consensus 128 ----~~~~~~~~~~~~i~~ 142 (143)
T PF13289_consen 128 ----DENEREFLEKYGIEV 142 (143)
T ss_pred ----hHHHHHHHHHcCCEE
Confidence 123456777888875
No 245
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=21.48 E-value=3e+02 Score=34.64 Aligned_cols=11 Identities=27% Similarity=0.549 Sum_probs=4.2
Q ss_pred CCCCCCCCCCC
Q 001250 91 APVSSSMPQTP 101 (1114)
Q Consensus 91 ~~~~~~~~~~~ 101 (1114)
.+.+..+.++|
T Consensus 491 ~~~~~~~gapp 501 (600)
T KOG1676|consen 491 SPASAAQGAPP 501 (600)
T ss_pred CCCcccCCCCC
Confidence 33334433333
No 246
>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]
Probab=21.38 E-value=38 Score=34.29 Aligned_cols=21 Identities=48% Similarity=0.646 Sum_probs=17.8
Q ss_pred CCcchhhccccCcccccCCCC
Q 001250 172 GQDSFVQDKLSSGRVFSRPHH 192 (1114)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~ 192 (1114)
-+-.||.|||+|+.||+.||-
T Consensus 102 teMDyvddkL~Sefvf~npna 122 (134)
T KOG1120|consen 102 TEMDYVDDKLSSEFVFSNPNA 122 (134)
T ss_pred ceehhhhhhhcCceEeeCCCc
Confidence 345689999999999999983
Done!