Query 001250
Match_columns 1114
No_of_seqs 607 out of 3194
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 18:35:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 100.0 1.1E-34 3.8E-39 345.1 20.3 369 546-1004 67-474 (506)
2 3hsi_A Phosphatidylserine synt 100.0 6.8E-31 2.3E-35 308.8 21.4 350 509-1004 22-401 (458)
3 1djx_A PLC-D1, phosphoinositid 99.9 3.1E-27 1E-31 287.2 9.1 171 287-483 403-623 (624)
4 3qr0_A Phospholipase C-beta (P 99.9 7.1E-25 2.4E-29 271.6 8.7 165 287-484 556-771 (816)
5 3ohm_B 1-phosphatidylinositol- 99.9 3.6E-25 1.2E-29 275.5 5.3 166 287-485 631-846 (885)
6 2zkm_X 1-phosphatidylinositol- 99.9 6.5E-25 2.2E-29 272.9 5.4 164 287-483 584-798 (799)
7 2fk9_A Protein kinase C, ETA t 99.8 1.4E-20 4.8E-25 191.6 12.2 141 329-483 11-156 (157)
8 1xdp_A Polyphosphate kinase; P 99.8 4.5E-20 1.5E-24 225.2 14.1 266 545-1004 347-631 (687)
9 2o8r_A Polyphosphate kinase; s 99.8 1.7E-20 5.8E-25 227.7 8.7 261 545-1005 352-638 (705)
10 2ep6_A MCTP2 protein; beta san 99.8 8.5E-19 2.9E-23 171.6 14.8 123 343-484 9-132 (133)
11 2dmh_A Myoferlin; beta-sandwic 99.8 7.7E-19 2.6E-23 173.0 14.6 124 345-487 5-136 (140)
12 1wfj_A Putative elicitor-respo 99.8 4.2E-19 1.4E-23 174.0 11.3 125 344-488 7-134 (136)
13 3b7y_A E3 ubiquitin-protein li 99.8 1.4E-18 4.9E-23 173.7 15.0 123 346-484 19-153 (153)
14 1gmi_A Protein kinase C, epsil 99.8 9.6E-19 3.3E-23 172.2 12.5 130 343-485 2-134 (136)
15 3kwu_A MUNC13-1; calcium bindi 99.8 6.7E-18 2.3E-22 168.0 17.4 120 345-483 15-146 (148)
16 1rlw_A Phospholipase A2, CALB 99.7 2.7E-18 9.3E-23 165.8 10.6 117 346-483 2-124 (126)
17 3m7f_B E3 ubiquitin-protein li 99.7 1.7E-17 5.9E-22 170.4 15.2 124 346-485 7-142 (176)
18 3pyc_A E3 ubiquitin-protein li 99.7 3.7E-17 1.3E-21 159.7 13.8 120 347-482 5-131 (132)
19 2nq3_A Itchy homolog E3 ubiqui 99.7 5.8E-17 2E-21 167.1 12.5 129 343-489 32-166 (173)
20 2b3r_A Phosphatidylinositol-4- 99.7 4.8E-16 1.6E-20 153.0 12.6 105 344-464 17-130 (134)
21 1rsy_A Synaptotagmin I; calciu 99.6 2.8E-16 9.6E-21 157.4 10.7 105 345-464 40-150 (152)
22 1a25_A CALB, protein kinase C 99.6 4.2E-16 1.4E-20 155.5 11.1 105 345-465 29-140 (149)
23 3f04_A Synaptotagmin-1; C2A, c 99.6 2.9E-16 9.9E-21 155.3 9.6 105 345-464 32-142 (143)
24 3fbk_A RGS3, RGP3, regulator o 99.6 2.7E-16 9.1E-21 157.9 9.3 107 345-467 25-140 (153)
25 1rh8_A Piccolo protein; beta-s 99.6 1.2E-16 4.2E-21 157.5 6.6 109 343-466 14-140 (142)
26 1v27_A Regulating synaptic mem 99.6 3.1E-16 1.1E-20 154.1 9.4 107 346-468 20-137 (141)
27 2d8k_A Synaptotagmin VII; exoc 99.6 6.7E-16 2.3E-20 152.5 11.8 105 346-465 25-136 (141)
28 2bwq_A Regulating synaptic mem 99.6 4.8E-16 1.7E-20 150.6 10.0 101 346-462 17-128 (129)
29 2r83_A Synaptotagmin-1; C2A-C2 99.6 1.8E-15 6E-20 165.9 15.1 127 345-486 17-149 (284)
30 3rdl_A Protein kinase C alpha 99.6 7.6E-16 2.6E-20 150.6 10.9 105 345-465 14-125 (137)
31 2q3x_A Regulating synaptic mem 99.6 4.6E-16 1.6E-20 159.4 9.8 107 344-465 27-140 (171)
32 2z0u_A WW domain-containing pr 99.6 2.8E-16 9.5E-21 159.2 7.9 103 346-463 42-154 (155)
33 3fdw_A Synaptotagmin-like prot 99.6 4.1E-16 1.4E-20 155.4 8.9 108 346-468 22-138 (148)
34 2dmg_A KIAA1228 protein; beta- 99.6 8.1E-16 2.8E-20 151.9 10.6 106 346-467 23-138 (142)
35 1wfm_A Synaptotagmin XIII; C2 99.6 1.3E-15 4.5E-20 150.4 12.0 102 346-465 25-133 (138)
36 2chd_A Rabphilin-3A, exophilin 99.6 2.3E-15 7.8E-20 148.6 10.4 105 345-464 27-140 (142)
37 1w15_A Synaptotagmin IV; metal 99.6 1.4E-15 4.9E-20 152.1 8.5 107 346-469 29-143 (153)
38 3n5a_A Synaptotagmin-7; calciu 99.6 9.5E-16 3.3E-20 149.9 6.6 108 346-470 15-130 (138)
39 1ugk_A Synaptotagmin IV, KIAA1 99.6 5.9E-15 2E-19 145.1 12.1 105 345-464 20-133 (138)
40 1tjx_A Similar to synaptotagmi 99.6 5.2E-15 1.8E-19 149.1 11.6 105 345-464 23-147 (159)
41 2cm5_A Rabphilin-3A; protein t 99.6 6.7E-15 2.3E-19 149.5 12.1 106 346-468 36-149 (166)
42 2cjt_A UNC-13 homolog A, MUNC1 99.6 1.2E-14 4E-19 143.2 12.0 116 346-482 4-130 (131)
43 2enp_A B/K protein; C2 type 1, 99.6 3.9E-15 1.3E-19 148.0 7.9 110 346-464 25-141 (147)
44 4ggj_A Mitochondrial cardiolip 99.5 1.8E-14 6.1E-19 151.4 11.6 132 546-761 47-179 (196)
45 3l9b_A Otoferlin; C2-domain, b 99.5 2.9E-14 9.9E-19 141.9 11.5 116 348-486 22-142 (144)
46 3bxj_A RAS GTPase-activating p 99.5 3.2E-15 1.1E-19 177.1 0.8 124 343-486 7-159 (483)
47 1dqv_A Synaptotagmin III; beta 99.5 9.9E-14 3.4E-18 153.7 11.9 124 346-485 19-150 (296)
48 3jzy_A Intersectin 2; C2 domai 99.5 1.5E-13 5.3E-18 162.5 13.5 116 346-483 386-507 (510)
49 2cjs_A UNC-13 homolog A, MUNC1 99.5 9.6E-14 3.3E-18 142.4 9.9 85 347-452 14-99 (167)
50 1byr_A Protein (endonuclease); 99.4 5.2E-13 1.8E-17 133.3 13.1 133 546-760 15-149 (155)
51 3nsj_A Perforin-1; pore formin 99.4 4.3E-13 1.5E-17 160.5 14.1 109 346-484 393-504 (540)
52 1byr_A Protein (endonuclease); 99.4 1.2E-12 4.2E-17 130.6 11.1 117 839-1003 13-130 (155)
53 2r83_A Synaptotagmin-1; C2A-C2 99.4 3.1E-12 1.1E-16 140.1 13.9 90 346-450 149-246 (284)
54 1cjy_A CPLA2, protein (cytosol 99.4 4.3E-13 1.5E-17 165.2 7.0 103 346-463 17-125 (749)
55 4gel_A Mitochondrial cardiolip 99.3 9.9E-13 3.4E-17 139.3 7.4 150 545-761 58-211 (220)
56 1dqv_A Synaptotagmin III; beta 99.3 8.8E-13 3E-17 146.1 2.9 109 346-470 151-267 (296)
57 4ggj_A Mitochondrial cardiolip 99.2 6.9E-12 2.3E-16 131.7 7.8 132 839-1029 45-177 (196)
58 3pfq_A PKC-B, PKC-beta, protei 99.1 1.7E-10 5.9E-15 141.7 9.8 107 344-466 169-282 (674)
59 1yrk_A NPKC-delta, protein kin 98.9 8.1E-09 2.8E-13 100.3 13.7 109 348-483 7-124 (126)
60 1xdp_A Polyphosphate kinase; P 98.9 6E-10 2.1E-14 136.5 6.3 117 843-1004 350-478 (687)
61 2enj_A NPKC-theta, protein kin 98.9 8.5E-09 2.9E-13 101.4 12.9 109 349-483 12-129 (138)
62 4gel_A Mitochondrial cardiolip 98.8 3.9E-09 1.3E-13 111.6 7.8 123 839-1004 57-193 (220)
63 3hsi_A Phosphatidylserine synt 98.7 3.8E-08 1.3E-12 115.9 10.0 124 839-989 36-165 (458)
64 1v0w_A Phospholipase D; hydrol 98.4 1.9E-07 6.6E-12 111.0 6.1 133 839-1003 65-207 (506)
65 2o8r_A Polyphosphate kinase; s 97.7 3.7E-05 1.3E-09 94.2 8.5 119 842-1004 354-485 (705)
66 3qph_A TRMB, A global transcri 93.4 0.0057 2E-07 69.4 -3.3 108 839-1004 118-229 (342)
67 2f5t_X Archaeal transcriptiona 91.8 0.21 7.2E-06 53.7 6.5 49 546-607 11-59 (233)
68 2wxf_A Phosphatidylinositol-4, 81.8 3.4 0.00012 52.7 9.8 71 345-433 215-294 (940)
69 2yrb_A Protein fantom; beta sa 76.4 6.6 0.00023 39.7 8.0 98 385-484 44-150 (156)
70 3qph_A TRMB, A global transcri 76.2 3.1 0.00011 47.0 6.3 46 546-604 120-165 (342)
71 3hhm_A Phosphatidylinositol-4, 71.7 7.5 0.00026 50.1 8.7 90 342-448 350-453 (1091)
72 3l4c_A Dedicator of cytokinesi 64.6 11 0.00039 40.0 7.0 38 397-434 79-119 (220)
73 1e7u_A Phosphatidylinositol 3- 64.1 20 0.00068 45.9 10.3 77 342-434 213-297 (961)
74 2y3a_A Phosphatidylinositol-4, 58.4 7 0.00024 50.6 4.8 75 341-433 347-430 (1092)
75 2c1l_A Restriction endonucleas 40.4 50 0.0017 35.8 7.0 90 886-1003 53-144 (358)
76 2f5t_X Archaeal transcriptiona 33.1 49 0.0017 35.3 5.7 52 839-910 9-60 (233)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=100.00 E-value=1.1e-34 Score=345.07 Aligned_cols=369 Identities=15% Similarity=0.106 Sum_probs=202.8
Q ss_pred hHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccC--CEEEEEEecCCCcccccccccccccc
Q 001250 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEG--VRVLLLVWDDPTSRSILGYKMDGVMQ 623 (1114)
Q Consensus 546 ~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eG--VrVrlLvwD~~~s~~~lg~k~~gvm~ 623 (1114)
+|++|+++|++||++|+|++|++ ++++. .+.+|.++|++||+|| |+||||+ |..++....
T Consensus 67 ~~~~l~~~I~~Ak~~I~i~~y~~------~~~d~--~g~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~--------- 128 (506)
T 1v0w_A 67 LLAKMTENIGNATRTVDISTLAP------FPNGA--FQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMN--------- 128 (506)
T ss_dssp HHHHHHHHHHTCSSEEEEEEESS------CCCHH--HHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCC---------
T ss_pred HHHHHHHHHHHhccEEEEEEeec------cCCCh--HHHHHHHHHHHHHhCCCCcEEEEEE-eCccccccc---------
Confidence 69999999999999999999963 13433 6789999999999999 9999996 554332110
Q ss_pred cCcHHHHHHHhcCCcEEE-EccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCC
Q 001250 624 THDEETRRVFKHSSVKVL-LCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHH 702 (1114)
Q Consensus 624 t~d~~~~~~~~h~gV~v~-l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H 702 (1114)
.......+.|+..|+++. ..|... ..|.. ....+.+||||++|||+ .+||+||+||++++|.+.
T Consensus 129 ~~~~~~~~~L~~~g~~~~~~~~~~~---~~~~~--~~~~~~r~H~K~~ViD~--------~~a~~Gg~Nl~~d~y~~~-- 193 (506)
T 1v0w_A 129 VIPSKYRDELTAKLGKAAENITLNV---ASMTT--SKTAFSWNHSKILVVDG--------QSALTGGINSWKDDYLDT-- 193 (506)
T ss_dssp CHHHHHHHHHHHHHGGGGGGEEEEE---EEECS--BTTTTBCBCCCEEEETT--------TEEEEESCCCCHHHHTSS--
T ss_pred cCCHHHHHHHHhcccceeecCcccc---ccccc--cCCccccceeeEEEECC--------cEEEeeccccCccccccC--
Confidence 011234444555444321 000000 00000 00113499999999999 799999999987777541
Q ss_pred CcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcCCC-CccccCCCchhhhhhccC
Q 001250 703 PLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASKPH-GIKKLKSGDDALLRIERI 781 (1114)
Q Consensus 703 ~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPAA~Dl~~~F~qRWn~a~~~~-~~~~L~~~~~~ll~~~~~ 781 (1114)
..+|||++++|+||+|.+++..|.++|+...... .+..+. .... ...+..
T Consensus 194 ---------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~~~~~~~~~~~-~~~~-~~~~~~ 244 (506)
T 1v0w_A 194 ---------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKSNIASVW-FAAS-GNAGCM 244 (506)
T ss_dssp ---------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTTTSTTTEE-EEES-TTCCCC
T ss_pred ---------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhccccCChhhhc-cccc-cccccC
Confidence 1479999999999999999999999999664310 010000 0000 000000
Q ss_pred CCccCCCCCCCCcCCCCCCceEEE--------EeecCCcccCCCCCCchhhcccccccCccc--------cchHHHHHHH
Q 001250 782 PGIIGISDAPSVRENDAESWHVQI--------FRSIDSTSVRGFPKDPKEATSKNLVCGKNV--------LIDMSIHTAY 845 (1114)
Q Consensus 782 p~~~~~~~~p~~~~~~~~~~~vQv--------~RSi~~~s~~~fP~~p~~~~~~~lv~gk~~--------~~e~sI~~AY 845 (1114)
+.... ...+.. ....+...+|+ +++.|......+ .+. +....++.+.+. ..+.+|+++|
T Consensus 245 ~~~~~-~~~p~~-~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~--~w~-~~~~~~~~d~P~~~~~~~~~~~~~~~~~~~ 319 (506)
T 1v0w_A 245 PTMHK-DTNPKA-SPATGNVPVIAVGGLGVGIKDVDPKSTFRPD--LPT-ASDTKCVVGLHDNTNADRDYDTVNPEESAL 319 (506)
T ss_dssp TTHHH-HHSCSS-CCCCSSEEEEEEECCCSSSCSCCTTCCCCCC--CCC-CSSSCSSTTCCCTTTSCHHHHHHCHHHHHH
T ss_pred chhcc-ccCccc-CcccccccceecccccceeecCCcccccccc--Ccc-cccceeeccccccccCcccccccccHHHHH
Confidence 00000 000000 00112223322 222221000000 000 000111111110 0135799999
Q ss_pred HHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchh----hHH
Q 001250 846 VKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA----TQR 921 (1114)
Q Consensus 846 l~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~a----vq~ 921 (1114)
+++|.+||++|||++|||.+-.. + ...+..+|+.+|.+|+ .+||+|+||+|.+++......+ ...
T Consensus 320 ~~~I~~A~~~I~I~tq~~~pyf~-p--------~~~~~~~i~~aL~~Aa--~rGV~VrIl~~~~~~~~~~~~a~~~~~~~ 388 (506)
T 1v0w_A 320 RALVASAKGHIEISQQDLNATCP-P--------LPRYDIRLYDALAAKM--AAGVKVRIVVSDPANRGAVGSGGYSQIKS 388 (506)
T ss_dssp HHHHHTCSSEEEEEESCSSCCTT-T--------SCSCCHHHHHHHHHHH--HTTCEEEEEECCGGGCC------CCCCSC
T ss_pred HHHHhCcCcEEEEEecccccccc-C--------cccchHHHHHHHHHHH--hCCCcEEEEeCCCCchHHHHHhHHHHHHH
Confidence 99999999999999966553100 0 0011237899999876 4789999999988754321100 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----------Cceeeec----CCCccccccCCceEEeccCCCceeCCCCCCCCcC
Q 001250 922 ILFWQHKTMQMMYETIYKALVEVG-----------LEGAFSP----QDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPER 986 (1114)
Q Consensus 922 il~wq~~tm~~~~~si~~~L~~aG-----------v~~~~~P----~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~R 986 (1114)
++.. ...+.. ...|+++| +++.... ..|..--....|+|++++|+ .+++|||+|||.|
T Consensus 389 L~~~-~~~l~~-----gv~ll~~g~~e~~~~~~~~l~i~~~~~~~~~~~~~~~~~~lHaK~~vvD~-~~~~vGS~N~d~r 461 (506)
T 1v0w_A 389 LSEI-SDTLRN-----RLANITGGQQAAKTAMCSNLQLATFRSSPNGKWADGHPYAQHHKLVSVDS-STFYIGSKNLYPS 461 (506)
T ss_dssp THHH-HHHHHH-----HHHHHHTSHHHHHHHHHHHEEEEECCSSSSSSCTTSCCCCBCCEEEEETT-TEEEEESCCSSCC
T ss_pred HHHh-hhhhcc-----cchhcccccchhccccccceeeeeccccCccccccCccccceEEEEEECC-cEEEEeCCCCCCc
Confidence 1000 000000 01122222 2331000 01110001235999999998 7899999999999
Q ss_pred CCCCCCCcceEEEEEcCc
Q 001250 987 SMEGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus 987 SM~G~rDsEIav~i~dp~ 1004 (1114)
|| +|+++.+++++
T Consensus 462 S~-----~E~~l~i~~~~ 474 (506)
T 1v0w_A 462 WL-----QDFGYIVESPE 474 (506)
T ss_dssp CS-----BCEEEEEECHH
T ss_pred ch-----hhceeEecCHH
Confidence 99 39999999875
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=99.97 E-value=6.8e-31 Score=308.80 Aligned_cols=350 Identities=12% Similarity=0.027 Sum_probs=215.1
Q ss_pred CCcccCCeeEEcccCCCCCCCCCceeecCCccccchhhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHH
Q 001250 509 FPLRKGGKVTLYQDAHVPDGCLPHLGLDRGMSYVHGKCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGE 588 (1114)
Q Consensus 509 ~P~r~Gn~V~ly~Dg~~~~~~~~~~~~~~g~~y~~g~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~d 588 (1114)
||. .||+|+++.||.. +|++++++|++||++|+|++|.| .++. .+..|.+
T Consensus 22 ~~~-~~n~v~~l~~g~~--------------------~~~~l~~~I~~A~~~I~i~~~~~-------~~d~--~g~~l~~ 71 (458)
T 3hsi_A 22 LAL-QAEQIEFLGSSAE--------------------FKTQIIELIRNAKKRIYVTALYW-------QKDE--AGQEILD 71 (458)
T ss_dssp EEC-CGGGEEECCCHHH--------------------HHHHHHHHHHTCSSEEEEEESCB-------CSSH--HHHHHHH
T ss_pred ccc-cCCeEEEEeCHHH--------------------HHHHHHHHHHhcCCEEEEEEEEE-------ecCc--HHHHHHH
Confidence 444 5899999998753 69999999999999999999864 4554 6889999
Q ss_pred HHHHHhcc--CCEEEEEEecCCC-cccccccccccccccC-cHHHHHHHh--cCCcEEE--Ec--cCccCcccccccccc
Q 001250 589 LLRSKSQE--GVRVLLLVWDDPT-SRSILGYKMDGVMQTH-DEETRRVFK--HSSVKVL--LC--PRIAGKRHSWAKQKE 658 (1114)
Q Consensus 589 LLk~KA~e--GVrVrlLvwD~~~-s~~~lg~k~~gvm~t~-d~~~~~~~~--h~gV~v~--l~--P~~~~~~~~~~~~~~ 658 (1114)
+|.+||++ ||+|+||+ |+.. .+...| ..... .......+. +++|+|. +. |...
T Consensus 72 aL~~aa~r~~GV~Vril~-D~~~~~r~~~g-----~~~~~~~~~~~~~L~~~g~nv~v~~~~f~~p~~~----------- 134 (458)
T 3hsi_A 72 EIYRVKQENPHLDVKVLI-DWHRAQRNLLG-----AEKSATNADWYCEQRQTYQLPDDPNMFFGVPINT----------- 134 (458)
T ss_dssp HHHHHHHHSTTCEEEEEE-ETTGGGSCCC----------CCHHHHHHHHHHHHTCTTCCCCEEEECSSS-----------
T ss_pred HHHHHHhcCCCCEEEEEE-ECccccccccc-----cccccccHHHHHHHHhhCCCceEeeeecCCcccc-----------
Confidence 99999998 99999996 6521 111011 00000 122333333 3347766 43 4321
Q ss_pred cccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEE
Q 001250 659 VGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHS 738 (1114)
Q Consensus 659 ~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~ 738 (1114)
...+.++|+|++|||+ .+ ++||+||+++++... .....|+|+.
T Consensus 135 ~~~~~r~H~Ki~viD~--------~v-~~~G~Ni~d~y~~~~---------------------------~~~~~drd~~- 177 (458)
T 3hsi_A 135 REVFGVLHVKGFVFDD--------TV-LYSGASINNVYLHQF---------------------------EKYRYDRYQK- 177 (458)
T ss_dssp SGGGCCEECCEEEETT--------EE-EEESCCBSTTTTTCS---------------------------SCCEECCEEE-
T ss_pred ccccCcceeeEEEECC--------CE-EEEeeecCHHHhcCC---------------------------cccCcchhhh-
Confidence 1246789999999999 78 556699999766431 1224588944
Q ss_pred EEeCHHHHHHHHHHHH--HHHHhcCCCCccccC--C---Cchhhhhh-ccCCCccCCCCCCCCcCCCCCCceEEEEe-ec
Q 001250 739 KIDGPAAYDVLTNFEE--RWRKASKPHGIKKLK--S---GDDALLRI-ERIPGIIGISDAPSVRENDAESWHVQIFR-SI 809 (1114)
Q Consensus 739 rVeGPAA~Dl~~~F~q--RWn~a~~~~~~~~L~--~---~~~~ll~~-~~~p~~~~~~~~p~~~~~~~~~~~vQv~R-Si 809 (1114)
|.||.++|....|.+ .|+...-. .+..+. . +....... +.++...... .+ ....+...+++.. +.
T Consensus 178 -i~g~~~~D~~~~~~~~~~~~g~~v~-~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~---~~~~~~~~~~v~p~~~ 251 (458)
T 3hsi_A 178 -ITHAELADSMVNFINDYLLDFSAVY-PLDVTNRPRTKEIRGNIRAYRKDLAQNGEYS-LK---SAVKLPNVLSVSPLFG 251 (458)
T ss_dssp -EECHHHHHHHHHHHHHTTCCTTTCE-ESSSSCCCCGGGTHHHHHHHHHHHHHHCCCC-CS---SCBSSCSSCEEEEEEE
T ss_pred -hcCchHHHHHHHHHHhhhhcCccch-hhHHHhcccchhhHHHHHHHHHhhhhccccc-cc---ccCCCCceEEEecCCC
Confidence 899999999999844 46532110 000000 0 00000000 0000000000 00 0000111233322 11
Q ss_pred CCcccCCCCCCchhhcccccccCccccchHHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHH
Q 001250 810 DSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALK 889 (1114)
Q Consensus 810 ~~~s~~~fP~~p~~~~~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~a 889 (1114)
+. . .+..|..+|+++|.+||+.|||+|+||+++. ++..+
T Consensus 252 ~~---------------------~---~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~~-----------------~~~~a 290 (458)
T 3hsi_A 252 LG---------------------A---SGNELNQVIEDLFLQVQKKLVICTPYFNFPR-----------------TLQHK 290 (458)
T ss_dssp ES---------------------S---SSCHHHHHHHHHHHTCSSEEEEECSSSCCCH-----------------HHHHH
T ss_pred CC---------------------C---chhHHHHHHHHHHHhcccEEEEEEeccCCCH-----------------HHHHH
Confidence 10 0 1357999999999999999999999999984 79999
Q ss_pred HHHHHHhCCCeEEEEEecCCC--CCCC-CchhhHHHHHHHHH--HHHHHHHHH---HHHHHHcC---CceeeecCCCccc
Q 001250 890 IADKIRAHERFAAYIVIPMWP--EGVP-TGAATQRILFWQHK--TMQMMYETI---YKALVEVG---LEGAFSPQDYLNF 958 (1114)
Q Consensus 890 La~aira~~gf~V~IVlP~~P--eg~p-~~~avq~il~wq~~--tm~~~~~si---~~~L~~aG---v~~~~~P~~Yl~f 958 (1114)
|..|+ .+|++|.||+|... ++.. .+. .++.|... .-+...+.+ ++.|.++| ++++.+...++
T Consensus 291 L~~Aa--~rGV~VrIi~~~~~and~y~~~~~---~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V~i~~~~~~~l-- 363 (458)
T 3hsi_A 291 IATLL--ENGKRVEIIVGDKVANDFYIPPEQ---PFKMAGALPYLYESNLRRFCEKFETQIESGQLVVRLWRDGDNTY-- 363 (458)
T ss_dssp HHHHH--TTTCEEEEEEECGGGSTTCCCTTS---CCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEEEEECBTTBEE--
T ss_pred HHHHH--HCCCeEEEEECCccccCCccCCcc---hhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeEEEEEecCCCce--
Confidence 99875 67899999999863 2110 000 00001000 000111122 35678888 66543232334
Q ss_pred cccCCceEEeccCCCceeCCCCCCCCcCCCCCCCCcceEEEEEcCc
Q 001250 959 FCLGNREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus 959 ~~L~~HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEIav~i~dp~ 1004 (1114)
|+|.+++|+ .+++|||+|+|.||+. +|+|+++.+++++
T Consensus 364 -----HaK~~vvD~-~~~~vGS~N~d~RS~~--lN~E~~~~i~~~~ 401 (458)
T 3hsi_A 364 -----HLKGVWVDD-RYILLTGNNLNPRAWR--LDAENGLLIYDPQ 401 (458)
T ss_dssp -----CCCEEEETT-TEEEEECCCCSHHHHH--TCEEEEEEEECTT
T ss_pred -----eEEEEEECC-eEEEecCCCCCcchhh--hCceeEEEEeCCc
Confidence 999999998 7999999999999998 9999999999885
No 3
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.93 E-value=3.1e-27 Score=287.24 Aligned_cols=171 Identities=27% Similarity=0.324 Sum_probs=148.2
Q ss_pred CCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeee------------------
Q 001250 287 SPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLL------------------ 345 (1114)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~Ll------------------ 345 (1114)
.+.+|+.||.++|+ +| |+|.|+|||||+|+.+|+ +||||||+ |+.++.++|.
T Consensus 403 ~~~~~~~~n~~~l~RvY---P~g~R~~SSN~~P~~~W~----~G~QmvAlN~Qt~d~~m~ln~g~F~~ng~~GYvlKP~~ 475 (624)
T 1djx_A 403 SGNGFVRHNVSCLSRIY---PAGWRTDSSNYSPVEMWN----GGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPAF 475 (624)
T ss_dssp HHHHHHHHHHHSCEEEE---CCTTCTTCCCCCSHHHHT----TTCCEEEECTTCCSHHHHHHHHHHHSGGGCSEEECCGG
T ss_pred hHHHHHHHhhhcceeec---cCCccCCCCCCCchHHhh----ccceeeeecccCCchHHhHHHHHhhcCCCCccEECCHH
Confidence 45789999999999 99 999999999999998887 99999999 8888744332
Q ss_pred --------------------ceEEEEEEEEeeCCCCCCC--CCcccccccccccCCCCCCCcEEEEEECC----EEEEee
Q 001250 346 --------------------HGNLDIWIYSAKNLPNMDM--FHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRT 399 (1114)
Q Consensus 346 --------------------hGtL~VtI~eAk~L~~~D~--~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RT 399 (1114)
.++|+|+|++|++|+.+|. .+ .+||||+|.+.+ ...+||
T Consensus 476 lr~~~~~f~p~~~~~~~~~~~~~L~V~Vi~A~~L~~~d~~~~~---------------~~DPYV~V~l~g~~~d~~~~kT 540 (624)
T 1djx_A 476 LRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLPKVNKNKNS---------------IVDPKVIVEIHGVGRDTGSRQT 540 (624)
T ss_dssp GGCTTCCCCTTSCCSSTTCCCEEEEEEEEEEESCCCCSSCSSS---------------CCCEEEEEEEESSGGGCEEEEC
T ss_pred HcCCCCCcCcccccccCCccceEEEEEEEEcCCCCcccccccC---------------CCCcEEEEEEecCCCCcceeec
Confidence 3479999999999998874 23 389999999965 244699
Q ss_pred eeecCC-CCCeeceEEEEEecCCC-ceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeE
Q 001250 400 FVISNS-EDPVWQQHFYVPVAHSA-AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATL 476 (1114)
Q Consensus 400 rVI~nt-~NPvWNE~F~f~va~~~-~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L 476 (1114)
++++++ +||+|||+|.|.+..+. +.|+|+|||+|.. ++++||+++|||.+|..|. +|++|.+.+|+++. .++|
T Consensus 541 kvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~~-~~~L 616 (624)
T 1djx_A 541 AVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQHP-SATL 616 (624)
T ss_dssp CCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEEE-EEEE
T ss_pred ccccCCCCCCccCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCCC-ceEE
Confidence 999997 99999999999998774 7899999999985 6899999999999999886 79999999999763 4689
Q ss_pred EEEEEEe
Q 001250 477 TLSIQYT 483 (1114)
Q Consensus 477 ~L~l~F~ 483 (1114)
+|+++|+
T Consensus 617 ~v~i~~~ 623 (624)
T 1djx_A 617 FVKISIQ 623 (624)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9998885
No 4
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=99.90 E-value=7.1e-25 Score=271.63 Aligned_cols=165 Identities=24% Similarity=0.325 Sum_probs=140.8
Q ss_pred CCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeec-----------------
Q 001250 287 SPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLH----------------- 346 (1114)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~Llh----------------- 346 (1114)
.+.+|+.||.++|+ +| |+|.|+|||||+|+.+|+ +||||||+ |+.++.++|.+
T Consensus 556 ~~~~~v~~n~~~l~RvY---P~g~RidSSNy~P~~~W~----~G~QmVALN~QT~d~~m~LN~g~F~~nG~cGYVLKP~~ 628 (816)
T 3qr0_A 556 NPEDFVDYNKKQITRIY---PKGTRVDSSNYVPQIYWN----AGCQLVALNFQCFDIAMCVNLGVFEYNGCSGYLLKPEF 628 (816)
T ss_dssp CHHHHHHHTTTSCEEEE---CCTTCTTCCCCCTHHHHT----TTCSEECBCTTCCSHHHHHHHHHTTTTTTCSEEECCHH
T ss_pred hhHHHHHhhhcccceeC---CCccccCCCCCCchhhcc----cCceEEeecCcCCChhhhhhhhhhccCCceeeeecChH
Confidence 45789999999999 99 999999999999998888 99999999 98887544432
Q ss_pred ---------------------eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCE------EEEee
Q 001250 347 ---------------------GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA------VVGRT 399 (1114)
Q Consensus 347 ---------------------GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~------~v~RT 399 (1114)
++|+|+|++|++|+.. .+||||+|.|.+. ...||
T Consensus 629 lr~~~~~f~p~~~~~~~~~~~~~L~V~Visaq~L~~~-------------------~~DPYV~V~l~g~p~d~~~~k~kT 689 (816)
T 3qr0_A 629 MRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDK-------------------QISSYVEVEMYGLPTDTVRKKFKT 689 (816)
T ss_dssp HHCTTCCCCTTCCSCCTTSCCEEEEEEEEEEECCCSS-------------------CCCEEEEEEEESSGGGCEEEEEEC
T ss_pred hcCCCcccCCCCCCCcCCccceEEEEEEEEcccCCCC-------------------CCCCeEEEEEeCCCcccccceeee
Confidence 3699999999999742 1799999999751 33599
Q ss_pred eeecC-CCCCeeceE-EEEE-ecCCC-ceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCe
Q 001250 400 FVISN-SEDPVWQQH-FYVP-VAHSA-AEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGAT 475 (1114)
Q Consensus 400 rVI~n-t~NPvWNE~-F~f~-va~~~-~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~ 475 (1114)
+|+++ ++||+|||+ |.|. +..+. +.|+|+|+|++ ++|||+++|||++|..|. ++++|.+.+|+++. .++
T Consensus 690 kvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~~-~at 762 (816)
T 3qr0_A 690 KIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPLG-LAS 762 (816)
T ss_dssp CCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCEE---EEEEEECTTSCEEE-EEE
T ss_pred EEecCCCCCCeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCCC-ceE
Confidence 99987 699999998 9998 76554 78999999985 899999999999999986 78999999999874 358
Q ss_pred EEEEEEEec
Q 001250 476 LTLSIQYTP 484 (1114)
Q Consensus 476 L~L~l~F~p 484 (1114)
|.+.+.+..
T Consensus 763 Lfv~i~~~~ 771 (816)
T 3qr0_A 763 VFAHIVAKD 771 (816)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 888888665
No 5
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=99.90 E-value=3.6e-25 Score=275.52 Aligned_cols=166 Identities=23% Similarity=0.280 Sum_probs=141.7
Q ss_pred CCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeece----------------
Q 001250 287 SPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG---------------- 347 (1114)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhG---------------- 347 (1114)
.+.+|+.||.++|+ +| |+|.|+|||||+|+.||+ +||||||+ |+.++.++|.+|
T Consensus 631 ~~~~~~~~n~~~l~RvY---P~g~RidSSNy~P~~~W~----~G~QmVALN~QT~d~~m~lN~g~F~~nG~cGYVLKP~~ 703 (885)
T 3ohm_B 631 SPMEFVEYNKQQLSRIY---PKGTRVDSSNYMPQLFWN----VGCQLVALNFQTLDVAMQLNAGVFEYNGRSGYLLKPEF 703 (885)
T ss_dssp SHHHHHHHHHHSCEEEE---CCTTCTTCCCCCTHHHHT----TTCSEECBCTTCCSHHHHHHHHHHTTGGGCSEEECCGG
T ss_pred CHHHHHHHhhccceeec---cCccccCCCCCCchhhcc----cCceeeeecCCCCCcccchhhhhhccCCceeeeecCHH
Confidence 45789999999999 99 999999999999998888 99999999 998885554433
Q ss_pred ----------------------EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC-----EEEEeee
Q 001250 348 ----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTF 400 (1114)
Q Consensus 348 ----------------------tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g-----~~v~RTr 400 (1114)
+|+|+|++|++|+.. .+||||+|.+.+ +...||+
T Consensus 704 lr~~~~~f~p~~~~~~~~~~~~~L~V~Visaq~L~~~-------------------~~DPYV~V~l~g~p~D~~~k~kTk 764 (885)
T 3ohm_B 704 MRRPDKSFDPFTEVIVDGIVANALRVKVISGQFLSDR-------------------KVGIYVEVDMFGLPVDTRRKYRTR 764 (885)
T ss_dssp GTCTTCCCCTTCSSCCTTCCCEEEEEEEEEEESCCSS-------------------CCCEEEEEEEESSTTTCBCCCCCC
T ss_pred HcCCCcCcCCCcCcccCcccceEEEEEEEEeccCccc-------------------CCCcEEEEEEeCCCcccccceeeE
Confidence 699999999999742 179999999975 2235999
Q ss_pred eecC-CCCCeece-EEEEE-ecCC-CceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeE
Q 001250 401 VISN-SEDPVWQQ-HFYVP-VAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATL 476 (1114)
Q Consensus 401 VI~n-t~NPvWNE-~F~f~-va~~-~~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L 476 (1114)
|+++ ++||+||| +|.|. |..+ .+.|+|+|||+| ++|||+++|||..|..|. ++++|.+.+|+++. .++|
T Consensus 765 vi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l~-~atL 837 (885)
T 3ohm_B 765 TSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSGY---HYVCLRNEANQPLC-LPAL 837 (885)
T ss_dssp CCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCEE---EEEEEECTTSCEEE-EEEE
T ss_pred EeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCCc---eEEEecCCCCCccC-ceEE
Confidence 9986 59999999 69998 6655 478999999987 899999999999999986 78999999998764 4689
Q ss_pred EEEEEEecc
Q 001250 477 TLSIQYTPM 485 (1114)
Q Consensus 477 ~L~l~F~p~ 485 (1114)
.|.|.+...
T Consensus 838 fv~i~~~~~ 846 (885)
T 3ohm_B 838 LIYTEASDY 846 (885)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEec
Confidence 888887753
No 6
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=99.90 E-value=6.5e-25 Score=272.88 Aligned_cols=164 Identities=22% Similarity=0.269 Sum_probs=139.8
Q ss_pred CCCCccccCCCCcc-ccCcCCCCCcccCCCCCccccCCCCCCCCceeccC--CCCCcceeeece----------------
Q 001250 287 SPGGFYGYPNDSFS-SYPERAYLGMIDSSNHLVYAHSDSFNGQNMQIVPS--TKGSLKVLLLHG---------------- 347 (1114)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~r~~ssn~~p~~~~~~~~~~g~QmVa~--q~~~~~~~LlhG---------------- 347 (1114)
.+.+|+.||.++|+ +| |+|.|||||||+|+.+|+ +||||||+ |+.++.++|.+|
T Consensus 584 ~~~~~~~~n~~~l~RvY---P~g~R~~SSN~~P~~~W~----~G~QmVAlN~Qt~d~~m~ln~g~F~~nG~cGYVlKP~~ 656 (799)
T 2zkm_X 584 ASVQFVDYNKRQMSRIY---PKGTRMDSSNYMPQMFWN----AGCQMVALNFQTMDLPMQQNMAVFEFNGQSGYLLKHEF 656 (799)
T ss_dssp SHHHHHHHHHHSEEEEE---CCTTCTTCCCCCSHHHHH----TTCSEECBCTTCCSHHHHHHHHHTTTGGGCSEEECCGG
T ss_pred CHHHHHHHhhhcceeec---cCCCcCCCCCCCcHHHHh----ccceEeeeccccCchHHHHHHhhhhccCCCCceECCHH
Confidence 45689999999999 99 999999999999997777 99999999 998886654433
Q ss_pred ----------------------EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC-----EEEEeee
Q 001250 348 ----------------------NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTF 400 (1114)
Q Consensus 348 ----------------------tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g-----~~v~RTr 400 (1114)
+|+|+|++|++|+.. .+||||+|.+.+ .+..||+
T Consensus 657 lr~~~~~f~p~~~~~~~~~~~~~L~V~Visa~~L~~~-------------------~~DPYV~V~l~g~p~d~~~k~kTk 717 (799)
T 2zkm_X 657 MRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLSER-------------------SVRTYVEVELFGLPGDPKRRYRTK 717 (799)
T ss_dssp GTCTTSCCCTTSCCTTTTTTCEEEEEEEEEEESCCSS-------------------CCCEEEEEEEECCTTSCCCCEECC
T ss_pred HhCCCccCCCcccccccceeeeeEEEEEEeccccCcc-------------------CCCcEEEEEEEecCCCcccceeec
Confidence 799999999999842 289999999954 1235999
Q ss_pred -eecC-CCCCeece-EEEE-EecCC-CceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCe
Q 001250 401 -VISN-SEDPVWQQ-HFYV-PVAHS-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGAT 475 (1114)
Q Consensus 401 -VI~n-t~NPvWNE-~F~f-~va~~-~~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~ 475 (1114)
++++ ++||+||| +|.| .+..+ .+.|+|+|+|+| +++||+++|||++|..|. +|++|.+..|+++. .+.
T Consensus 718 ~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~~~-~~~ 790 (799)
T 2zkm_X 718 LSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY---HHLCLHSESNMPLT-MPA 790 (799)
T ss_dssp CCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEEE-EEE
T ss_pred ccccCCCCCCeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCCc---EEEeccCCCCCCCC-ceE
Confidence 8875 69999999 6999 78655 378999999987 899999999999999886 79999999998764 468
Q ss_pred EEEEEEEe
Q 001250 476 LTLSIQYT 483 (1114)
Q Consensus 476 L~L~l~F~ 483 (1114)
|.|++++.
T Consensus 791 Lfv~i~~~ 798 (799)
T 2zkm_X 791 LFIFLEMK 798 (799)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 88888875
No 7
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=191.58 Aligned_cols=141 Identities=18% Similarity=0.299 Sum_probs=109.0
Q ss_pred CceeccCCCCCcceeeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCC
Q 001250 329 NMQIVPSTKGSLKVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDP 408 (1114)
Q Consensus 329 g~QmVa~q~~~~~~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NP 408 (1114)
..-.|+.......+.+++|+|+|+|++|++|+.+|..+++. +|++ ...++||||+|.+++++++||+++++++||
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~~---~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP 85 (157)
T 2fk9_A 11 SSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHS--LFKK---GHQLLDPYLTVSVDQVRVGQTSTKQKTNKP 85 (157)
T ss_dssp CSCCCC-------CCCEEEEEEEEEEEEECCCCCHHHHHTT--TSSS---SCCCCCEEEEEEETTEEEEECCCCSSCSSC
T ss_pred cCccccCCCCcchhccCccEEEEEEEEEECCCCcccccccc--cccc---CCCCCCeEEEEEECCEeeEEeeecCCCCCC
Confidence 34455553334456678999999999999999988543210 1211 113489999999999988899999999999
Q ss_pred eeceEEEEEecCCCceEEEEEEEecCCC-CccceEEEEeeeeeecC----ceeeeeeeeccCCCCCCCCCCeEEEEEEEe
Q 001250 409 VWQQHFYVPVAHSAAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSG----GKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1114)
Q Consensus 409 vWNE~F~f~va~~~~~L~f~V~D~D~~g-ddfIGqa~IpL~eL~sG----~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~ 483 (1114)
+|||+|.|.+.. ...|.|+|||+|..+ +++||++.|++++|..+ ...+.||+|.. .|+|+|+++|.
T Consensus 86 ~WNE~F~f~v~~-~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--------~G~i~l~l~~~ 156 (157)
T 2fk9_A 86 TYNEEFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--------EGKVFVVITLT 156 (157)
T ss_dssp EEEEEEEEEEEE-ECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--------SCEEEEEEEEC
T ss_pred ccCcEEEEEcCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--------CcEEEEEEEEE
Confidence 999999999864 468999999999865 88999999999999855 67899999952 36999999984
No 8
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.81 E-value=4.5e-20 Score=225.25 Aligned_cols=266 Identities=11% Similarity=0.079 Sum_probs=176.5
Q ss_pred hhHHHHHHHHHhccc-----ceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccc
Q 001250 545 KCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMD 619 (1114)
Q Consensus 545 ~~f~al~~AI~~Ak~-----~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~ 619 (1114)
..|+.+.+.|.+|++ +|+|+.|.+. + +..+.++|+++|++||+|+||+ |..+....
T Consensus 347 ~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~-------~-----d~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~------ 407 (687)
T 1xdp_A 347 HTFEHVLELLRQASFDPSVLAIKINIYRVA-------K-----DSRIIDSMIHAAHNGKKVTVVV-ELQARFDE------ 407 (687)
T ss_dssp BCTHHHHHHHHHHHHCTTEEEEEEEESSCC-------T-----TCHHHHHHHHHHHTTCEEEEEE-CTTCSSTT------
T ss_pred hhhhhHHHHHHHHhhCCcceEEEEEeeeec-------C-----cHHHHHHHHHHHhcCCEEEEEE-CCCcccch------
Confidence 368999999999997 9999877532 2 2579999999999999999995 76542110
Q ss_pred cccccCcHHHHHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEE---EEEcccccCCCc
Q 001250 620 GVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKII---AFVGGLDLCDGR 696 (1114)
Q Consensus 620 gvm~t~d~~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~V---AFvGGiDL~dgR 696 (1114)
.....+.+.+..+||+|...-. .++.|.|++|||++..+ .+ ||+||.|+...-
T Consensus 408 ----~~n~~~~~~L~~aGV~V~~~~~----------------~~k~H~Ki~VID~re~~----~i~~~a~iGS~N~d~rs 463 (687)
T 1xdp_A 408 ----EANIHWAKRLTEAGVHVIFSAP----------------GLKIHAKLFLISRKENG----EVVRYAHIGTGNFNEKT 463 (687)
T ss_dssp ----TTTTTTTHHHHHHTCEEEECCT----------------TCEECCEEEEEEEEETT----EEEEEEEEESSCSCTTG
T ss_pred ----hhHHHHHHHHHHCCCEEEEecC----------------CccccceEEEEEeccCC----eEEEEEEEeCCcCCcch
Confidence 0012344567788999875311 25799999999941110 45 999999986631
Q ss_pred CCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCH-HHHHHHHHHHHHHHHhcCCCCccccCCCchhh
Q 001250 697 YDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKASKPHGIKKLKSGDDAL 775 (1114)
Q Consensus 697 wDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGP-AA~Dl~~~F~qRWn~a~~~~~~~~L~~~~~~l 775 (1114)
+ .-|+|+++++.|| .|.++...|...|....... +
T Consensus 464 ~---------------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s~~~~----~------- 499 (687)
T 1xdp_A 464 A---------------------------------RLYTDYSLLTADARITNEVRRVFNFIENPYRPVT----F------- 499 (687)
T ss_dssp G---------------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTTSCCC----C-------
T ss_pred h---------------------------------hhcceEEEEEeCHHHHHHHHHHHHHHHhhccccc----h-------
Confidence 1 2479999999997 69999999999997542210 0
Q ss_pred hhhccCCCccCCCCCCCCcCCCCCCceEEEEeecCCcccCCCCCCchhhcccccccCccccchHHHHHHHHHHHHhccc-
Q 001250 776 LRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH- 854 (1114)
Q Consensus 776 l~~~~~p~~~~~~~~p~~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~~~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~- 854 (1114)
. .+ +.+ +.. ....+.......|+.|++
T Consensus 500 ------~-----------------~l----~~s-P~~------------------------~~~~l~~~I~~ei~~A~~g 527 (687)
T 1xdp_A 500 ------D-----------------YL----MVS-PQN------------------------SRRLLYEMVDREIANAQQG 527 (687)
T ss_dssp ------S-----------------SC----EEE-TTS------------------------HHHHHHHHHHHHHHHHHTT
T ss_pred ------h-----------------he----eeC-Cch------------------------hhHHHHHHHHHHHHHHHcC
Confidence 0 00 001 100 123455556666777886
Q ss_pred ---EEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCC---CCCCchhhHHHHHHHHH
Q 001250 855 ---FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPE---GVPTGAATQRILFWQHK 928 (1114)
Q Consensus 855 ---fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Pe---g~p~~~avq~il~wq~~ 928 (1114)
+|+|.+.| +++. .|..||..|.+ +||+|.||+..... |.|.-.+
T Consensus 528 ~~~~I~i~~~~-lpD~-----------------~ii~AL~~Aa~--rGV~VrLivrg~c~l~pgvp~~sd---------- 577 (687)
T 1xdp_A 528 LPSGITLKLNN-LVDK-----------------GLVDRLYAASS--SGVPVNLLVRGMCSLIPNLEGISD---------- 577 (687)
T ss_dssp CCCCEEEEESC-BCCH-----------------HHHHHHHHHHH--TTCCEEEEESSCBCBCTTCTTTST----------
T ss_pred CCCEEEEEeCC-CCCH-----------------HHHHHHHHHHH--CCCEEEEEEecccccCCCCCCCCC----------
Confidence 89999887 5553 78999999864 68888888843210 1110000
Q ss_pred HHHHHHHHHHHHHHHcCCceeeecCCCccccccCCceEEecc---CCCceeCCCCCCCCcCCCCCCCCcceEEEEEcCc
Q 001250 929 TMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQT---DTSLSGNPTAPNTPERSMEGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus 929 tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~HsK~~iv---Dd~~~~~IGSANiN~RSM~G~rDsEIav~i~dp~ 1004 (1114)
.+.++..-..||. |+++... |+ .+++||||||+.|||. +|.|+++.|+|++
T Consensus 578 ----------------ni~V~s~~~r~Le------h~rI~~f~~~dd-~~~~IGSAN~d~Rsl~--~n~Ev~~~I~d~~ 631 (687)
T 1xdp_A 578 ----------------NIRAISIVDRYLE------HDRVYIFENGGD-KKVYLSSADWMTRNID--YRIEVATPLLDPR 631 (687)
T ss_dssp ----------------TEEEEEECSSSEE------CCCEEEECGGGS-CEEEEESCCBSHHHHH--SEEEEEEECCSHH
T ss_pred ----------------CEEEEEehhHHhh------CCeEEEEcCCCC-CEEEEEcCccchhhhh--hheeeeEEecCHH
Confidence 0111100112332 5555444 44 6889999999999998 9999999999875
No 9
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.81 E-value=1.7e-20 Score=227.74 Aligned_cols=261 Identities=11% Similarity=0.135 Sum_probs=177.6
Q ss_pred hhHHHHHHHHHhccc-----ceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccc
Q 001250 545 KCWYDICNAISQAQR-----LIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMD 619 (1114)
Q Consensus 545 ~~f~al~~AI~~Ak~-----~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~ 619 (1114)
..|+.+.++|++|++ +|.++.|++. ++ ..+.++|.+||++||+|++|| | .+++...
T Consensus 352 ~sf~~vi~~I~~A~~DP~V~sIk~tlYr~~-------~d-----s~Iv~ALi~AA~rGv~V~vLv-e-l~arfde----- 412 (705)
T 2o8r_A 352 YTYDYVVRLLMEAAISPDVSEIRLTQYRVA-------EN-----SSIISALEAAAQSGKKVSVFV-E-LKARFDE----- 412 (705)
T ss_dssp BCSHHHHHHHHHHHTCTTEEEEEEEESCCC-------SC-----CHHHHHHHHHHHTTCEEEEEE-C-CCSCC-------
T ss_pred HhHHHHHHHHHHhccCCCceEEEEEEEEEc-------CC-----HHHHHHHHHHHHCCCEEEEEE-e-CCCCcch-----
Confidence 369999999999999 9999988542 22 589999999999999999995 7 4443110
Q ss_pred cccccCcHHHHHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccc----cCCC
Q 001250 620 GVMQTHDEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLD----LCDG 695 (1114)
Q Consensus 620 gvm~t~d~~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiD----L~dg 695 (1114)
.....+.+.|+.+||+|..- . .++++|+|++|||++. .++ ||++ +..|
T Consensus 413 ----e~ni~wa~~Le~aGv~Vv~g-~---------------~~lk~H~Ki~lIdrr~------~~~--g~~~~y~~igtG 464 (705)
T 2o8r_A 413 ----ENNLRLSERMRRSGIRIVYS-M---------------PGLKVHAKTALILYHT------PAG--ERPQGIALLSTG 464 (705)
T ss_dssp ------CHHHHHHHHHHTCEEEEC-C---------------TTCCBCCCEEEEEECC------CSS--SCCCEEEEEESS
T ss_pred ----hhhHHHHHHHHHCCCEEEEc-c---------------CCCCceeEEEEEeccc------ccC--CceeEEEecccc
Confidence 01235667788999998752 0 2478999999999830 033 5540 0122
Q ss_pred cCCCCCCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCH-HHHHHHHHHHHHHHHhcCCCCccccCCCchh
Q 001250 696 RYDNPHHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP-AAYDVLTNFEERWRKASKPHGIKKLKSGDDA 774 (1114)
Q Consensus 696 RwDt~~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGP-AA~Dl~~~F~qRWn~a~~~~~~~~L~~~~~~ 774 (1114)
-|.. .-..-|.|+++...+| ++.|+...|..-|.....
T Consensus 465 N~n~----------------------------~tariy~D~~l~t~~~~i~~dl~~vF~~~tg~~~~------------- 503 (705)
T 2o8r_A 465 NFNE----------------------------TTARIYSDTTLMTANTDIVHDVYRLFRILDGDPEP------------- 503 (705)
T ss_dssp CSSC----------------------------CCSSCEEEEEEEECCHHHHHHHHHHHHHHTTCCCC-------------
T ss_pred ceee----------------------------eEEEEEeeeeeeecChHHHHHHHHHHHHHhCCCCC-------------
Confidence 2211 0112488999999886 669999999655531100
Q ss_pred hhhhccCCCccCCCCCCCCcCCCCCCceEEEEeecCCcccCCCCCCchhhcccccccCccccchHHHHHHHHHHHHhccc
Q 001250 775 LLRIERIPGIIGISDAPSVRENDAESWHVQIFRSIDSTSVRGFPKDPKEATSKNLVCGKNVLIDMSIHTAYVKAIRSAQH 854 (1114)
Q Consensus 775 ll~~~~~p~~~~~~~~p~~~~~~~~~~~vQv~RSi~~~s~~~fP~~p~~~~~~~lv~gk~~~~e~sI~~AYl~aI~~Ak~ 854 (1114)
..+ .|++- .|. .....|.+++..+|..||+
T Consensus 504 ------------------------~~~-~~l~~-sP~------------------------~~~~~i~~~i~~eI~~Ak~ 533 (705)
T 2o8r_A 504 ------------------------ARF-SRLLV-ARY------------------------NMGEAITNLIEREIENVKR 533 (705)
T ss_dssp ------------------------SCC-SSCEE-TTT------------------------THHHHHHHHHHHHHHHHHT
T ss_pred ------------------------CCc-eEEEE-CCc------------------------hHHHHHHHHHHHHHHHHhc
Confidence 000 12221 111 0246799999999999999
Q ss_pred ----EEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEe-------cCC--CCCCCCchhhHH
Q 001250 855 ----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVI-------PMW--PEGVPTGAATQR 921 (1114)
Q Consensus 855 ----fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVl-------P~~--Peg~p~~~avq~ 921 (1114)
+|+|.++| +++. +|..||..|.+ .||+|.||+ |.. +|.. .|
T Consensus 534 G~~a~I~ik~n~-l~D~-----------------~ii~aL~~As~--~GV~V~LIVRGiC~L~Pgv~~sdni----~V-- 587 (705)
T 2o8r_A 534 GKRGYMLLKMNG-LQDK-----------------NVITQLYRASE--AGVEIDLIVRGICCLVPDMPQSRNI----RV-- 587 (705)
T ss_dssp TCCCEEEEEESC-BCCH-----------------HHHHHHHHHHH--TTCEEEEEESSCBCSCCSSGGGTTE----EE--
T ss_pred CCCCEEEEEcCC-CCCH-----------------HHHHHHHHHHH--CCCeEEEEEccccccCCCCCCCCCe----EE--
Confidence 99999998 6663 79999999864 689999998 652 2220 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCceEEecc---CCCceeCCCCCCCCcCCCCCCCCcceEE
Q 001250 922 ILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQT---DTSLSGNPTAPNTPERSMEGTRDTEIAM 998 (1114)
Q Consensus 922 il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~HsK~~iv---Dd~~~~~IGSANiN~RSM~G~rDsEIav 998 (1114)
++++.+|++ |+++... |+ .++.||||||+.|||. ++.|+++
T Consensus 588 -------------~Sivgr~Le--------------------h~RIy~f~~gd~-~~~~IGSAn~m~Rnl~--~r~Ev~~ 631 (705)
T 2o8r_A 588 -------------TRLVDMYLE--------------------HSRIWCFHNGGK-EEVFISSADWMKRNLY--NRIETAC 631 (705)
T ss_dssp -------------EECCSSSEE--------------------CCCEEEECGGGS-CEEEEESCCBCHHHHH--TSBCEEE
T ss_pred -------------EeeHHHHHh--------------------cCEEEEEECCCC-cEEEEeccccchhhhh--heeEEEE
Confidence 123333333 4444333 44 6889999999999998 9999999
Q ss_pred EEEcCcc
Q 001250 999 GAYQPEY 1005 (1114)
Q Consensus 999 ~i~dp~~ 1005 (1114)
.++|++.
T Consensus 632 ~i~d~~~ 638 (705)
T 2o8r_A 632 PVLDPTL 638 (705)
T ss_dssp ECCSHHH
T ss_pred EEcCHHH
Confidence 9999863
No 10
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.79 E-value=8.5e-19 Score=171.57 Aligned_cols=123 Identities=22% Similarity=0.333 Sum_probs=107.7
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCC
Q 001250 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1114)
Q Consensus 343 ~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~ 422 (1114)
....|+|+|+|++|++|+.+|..+. +||||+|.+.+.+. ||++++++.||+|||+|.|.+....
T Consensus 9 ~~~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~-kT~~~~~t~nP~wne~f~f~~~~~~ 72 (133)
T 2ep6_A 9 VKDVGILQVKVLKAADLLAADFSGK---------------SDPFCLLELGNDRL-QTHTVYKNLNPEWNKVFTFPIKDIH 72 (133)
T ss_dssp CCCSEEEEEEEEEEESCCCSSSSSC---------------CCEEEEEEETTEEE-ECCCCSSCSSCCCCEEEEEEESCTT
T ss_pred cCCceEEEEEEEeeECCCCCCCCCC---------------cCeEEEEEECCEEE-EeeeecCCCCCccccEEEEEecCCC
Confidence 3456899999999999999987765 89999999999875 9999999999999999999998878
Q ss_pred ceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEec
Q 001250 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1114)
Q Consensus 423 ~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p 484 (1114)
..|.|+|||+|.. .+++||++.|++.++..|. +.|++|.+.+++. +..|+|+|+++|..
T Consensus 73 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 73 DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLIY 132 (133)
T ss_dssp CEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEEE
T ss_pred CEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEEe
Confidence 8999999999997 5899999999999998765 5899998776543 34579999999863
No 11
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=172.95 Aligned_cols=124 Identities=27% Similarity=0.461 Sum_probs=107.9
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC---
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--- 421 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~--- 421 (1114)
..|+|.|+|++|++|+.+|. +. +||||+|.+.+++ +||++++++.||+|||+|.|.+...
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~---------------~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~v~~~~~~ 67 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GK---------------PDPIVSVIFKDEK-KKTKKVDNELNPVWNEILEFDLRGIPLD 67 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SC---------------CCEEEEEECSSCE-EECCCCCSCSSCEEEEEEEEECSSCCCC
T ss_pred CCcEEEEEEEEeeCCCCCCC-CC---------------CCeEEEEEECCEe-EEeeeecCCCCCccCcEEEEEecccccC
Confidence 45789999999999999987 54 8999999999877 5999999999999999999998653
Q ss_pred -CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeee---eccCCCCCCCCCCeEEEEEEEecccc
Q 001250 422 -AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYP---VLNGSGKPCKPGATLTLSIQYTPMER 487 (1114)
Q Consensus 422 -~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~p---Ll~~~Gkp~k~~g~L~L~l~F~p~~~ 487 (1114)
...|.|+|||+|.. .+++||++.|++.+|..+...+.|++ |.+.+++.. .|+|+|+++|.|...
T Consensus 68 ~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~--~G~l~l~~~~~p~~~ 136 (140)
T 2dmh_A 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDT--GATIDLVIGYDPPSG 136 (140)
T ss_dssp TTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEE--EEEEEEEEEECCCBS
T ss_pred CCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCC--CCEEEEEEEEECCCC
Confidence 58899999999986 57899999999999998888889988 777666533 479999999998543
No 12
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.78 E-value=4.2e-19 Score=174.01 Aligned_cols=125 Identities=23% Similarity=0.423 Sum_probs=109.1
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeec-CCCCCeeceEEEEEecCCC
Q 001250 344 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAHSA 422 (1114)
Q Consensus 344 LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~-nt~NPvWNE~F~f~va~~~ 422 (1114)
...|+|+|+|++|++|+.+|.++. +||||+|.+.+.+. ||++++ ++.||+|||+|.|.+....
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~-kT~~~~~~~~nP~Wne~f~f~v~~~~ 70 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNN---------------MDPYVQLTCRTQDQ-KSNVAEGMGTTPEWNETFIFTVSEGT 70 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCS---------------SCCCEEEESSSCEE-ECCCCTTCCSSCEEEEEEEEEEESSC
T ss_pred CCcEEEEEEEEeccCCCCcccCCC---------------cCceEEEEECCccc-eeEeccCCCCCCccCcEEEEEECCCC
Confidence 356899999999999999987765 89999999999875 999998 8999999999999998877
Q ss_pred ceEEEEEEEecCC-CCccceEEEEeeeee-ecCceeeeeeeeccCCCCCCCCCCeEEEEEEEeccccc
Q 001250 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQI-YSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERL 488 (1114)
Q Consensus 423 ~~L~f~V~D~D~~-gddfIGqa~IpL~eL-~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~~~ 488 (1114)
..|+|+|||+|.. ++++||++.|++.++ ..+...+.||+|. .+++ ..|+|+|+++|.|...+
T Consensus 71 ~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~~---~~G~i~l~l~~~p~~~~ 134 (136)
T 1wfj_A 71 TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDEE---YKGEIWVALSFKPSGPS 134 (136)
T ss_dssp CEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETTE---EEEEEEEEEEEEECCSC
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cCCc---cCEEEEEEEEEEeCCCC
Confidence 8999999999985 589999999999999 4566678999998 4333 34799999999997654
No 13
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.78 E-value=1.4e-18 Score=173.73 Aligned_cols=123 Identities=20% Similarity=0.341 Sum_probs=99.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC-----EEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g-----~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
.|.|+|+|++|++|+.+|.++. +||||+|.+.+ ....||++++++.||+|||+|.|.+..
T Consensus 19 ~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 83 (153)
T 3b7y_A 19 SRIVRVRVIAGIGLAKKDILGA---------------SDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP 83 (153)
T ss_dssp CEEEEEEEEEEESCC----------------------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT
T ss_pred ccEEEEEEEEeeCCCCCCCCCC---------------CCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC
Confidence 4679999999999999987765 89999999974 345699999999999999999999987
Q ss_pred CCceEEEEEEEecCC-CCccceEEEEeeeeeecCcee------eeeeeeccCCCCCCCCCCeEEEEEEEec
Q 001250 421 SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKV------EGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1114)
Q Consensus 421 ~~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~i------d~W~pLl~~~Gkp~k~~g~L~L~l~F~p 484 (1114)
....|+|+|||+|.. .+++||++.|++.+|..+... +.||+|....++. +..|+|+|+++|.|
T Consensus 84 ~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 84 QQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLP 153 (153)
T ss_dssp TTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEECC
T ss_pred CCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCC-CcceEEEEEEEEeC
Confidence 778999999999986 588999999999999866432 5899997655433 34589999999986
No 14
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.77 E-value=9.6e-19 Score=172.21 Aligned_cols=130 Identities=16% Similarity=0.305 Sum_probs=105.2
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCC
Q 001250 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1114)
Q Consensus 343 ~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~ 422 (1114)
.+++|+|+|+|++|++|+.+|.++++. +++. .+...+||||+|.+++..++||++++++.||+|||+|.|.+...
T Consensus 2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~---~g~~-~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~- 76 (136)
T 1gmi_A 2 VVFNGLLKIKICEAVSLKPTAWSLRDA---VGPR-PQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG- 76 (136)
T ss_dssp CCEEEEEEEEEEEEESCCCCHHHHCC----CCSS-CCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-
T ss_pred cccceEEEEEEEeCcCCCCcccccccc---cccc-cCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-
Confidence 357899999999999999888544210 1110 01224899999999998888999999999999999999998755
Q ss_pred ceEEEEEEEecCC-CCccceEEEEeeeeeecC--ceeeeeeeeccCCCCCCCCCCeEEEEEEEecc
Q 001250 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSG--GKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1114)
Q Consensus 423 ~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG--~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~ 485 (1114)
..|.|+|||+|.. .+++||++.|++.++..+ ...+.|++|.. .|+|+|+++|...
T Consensus 77 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--------~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--------EGKVYVIIDLSGS 134 (136)
T ss_dssp CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--------SCEEEEEEEEEEE
T ss_pred CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--------CeEEEEEEEEEec
Confidence 7999999999985 488999999999999864 34689999841 3699999999764
No 15
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.77 E-value=6.7e-18 Score=167.97 Aligned_cols=120 Identities=25% Similarity=0.390 Sum_probs=104.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCCce
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSAAE 424 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~ 424 (1114)
..|.|+|+|++|++|+.+|.++. +||||+|.+++.+. ||++++++.||+|||+|.|.+..+...
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~-kT~~~~~t~nP~Wne~f~f~v~~~~~~ 78 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGS---------------SDPYVTVQVGKTKK-RTKTIYGNLNPVWEENFHFECHNSSDR 78 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEETTEEE-ECCCCCSCSSCEEEEEEEEEECSTTCE
T ss_pred cccEEEEEEEeeeCCCCCCCCCC---------------cCeEEEEEECCEEE-ECCccCCCCCCCcccEEEEEecCCCCE
Confidence 36899999999999999988765 89999999988765 999999999999999999999888889
Q ss_pred EEEEEEEecCC------------CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEe
Q 001250 425 VHFFVKDSDVV------------GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1114)
Q Consensus 425 L~f~V~D~D~~------------gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~ 483 (1114)
|.|+|||+|.. ++++||++.|++.++. ...+.|++|....++. +..|+|+|+++|.
T Consensus 79 l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~-~~~G~i~l~l~~e 146 (148)
T 3kwu_A 79 IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKS-AVSGAIRLHISVE 146 (148)
T ss_dssp EEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTC-CCCCEEEEEEEEE
T ss_pred EEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCC-CCceEEEEEEEEE
Confidence 99999999984 6999999999999994 4567999998554433 2457999999985
No 16
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.75 E-value=2.7e-18 Score=165.82 Aligned_cols=117 Identities=21% Similarity=0.352 Sum_probs=98.5
Q ss_pred ceEEEEEEEEeeCCCCC---CCCCcccccccccccCCCCCCCcEEEEEECC--EEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 346 HGNLDIWIYSAKNLPNM---DMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~---D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
.|.|.|+|++|++|+.+ |..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.+..
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 66 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDT---------------PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 66 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCC---------------CCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECT
T ss_pred CcEEEEEEEeeeCCCCCCccccCCC---------------CCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecC
Confidence 47899999999999985 44443 89999999986 245699999999999999999999954
Q ss_pred C-CceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEe
Q 001250 421 S-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1114)
Q Consensus 421 ~-~~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~ 483 (1114)
. ...|.|+|||+|..++++||++.|+|.+|..|...+.|++|.. .+.+.|+|+|+..
T Consensus 67 ~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le~~ 124 (126)
T 1rlw_A 67 NQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEVA 124 (126)
T ss_dssp TSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEECC
T ss_pred CCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEEeC
Confidence 4 5789999999999889999999999999999998999999963 1224666666544
No 17
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.74 E-value=1.7e-17 Score=170.36 Aligned_cols=124 Identities=21% Similarity=0.352 Sum_probs=99.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC-----EEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g-----~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
.|+|+|+|++|++|+.+|.++. +||||+|.+.+ ....||+|++++.||+|||+|.|.+..
T Consensus 7 ~g~L~V~v~~a~~L~~~d~~g~---------------~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~ 71 (176)
T 3m7f_B 7 TRVVRVKVIAGIGLAKKDILGA---------------SDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP 71 (176)
T ss_dssp CEEEEEEEEEEESCC---CCCC---------------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT
T ss_pred cEEEEEEEEEeeCCCCcCCCCC---------------cCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC
Confidence 4789999999999999988765 89999999975 145699999999999999999999987
Q ss_pred CCceEEEEEEEecCC-CCccceEEEEeeeeeecCcee-e-----eeeeeccCCCCCCCCCCeEEEEEEEecc
Q 001250 421 SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKV-E-----GTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1114)
Q Consensus 421 ~~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~i-d-----~W~pLl~~~Gkp~k~~g~L~L~l~F~p~ 485 (1114)
....|.|+|||+|.. .++|||++.|+|.+|..+... + .||+|..+.++. +..|+|+|+|+|.|.
T Consensus 72 ~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 72 QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLPK 142 (176)
T ss_dssp TTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTC-CCCSEEEEEEEECC-
T ss_pred CCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCC-ccCEEEEEEEEEEeC
Confidence 778999999999986 589999999999999876433 2 799998654443 245799999999997
No 18
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.72 E-value=3.7e-17 Score=159.68 Aligned_cols=120 Identities=21% Similarity=0.307 Sum_probs=98.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC-EEEEeeeeecCCCCCeeceEEEEEecCCCceE
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG-AVVGRTFVISNSEDPVWQQHFYVPVAHSAAEV 425 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g-~~v~RTrVI~nt~NPvWNE~F~f~va~~~~~L 425 (1114)
..|+|+|++|++|+.+|.++. +||||+|.+.+ ...+||+++++++||+|||+|.|.+.... .|
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~---------------sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l 68 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRL---------------PDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SI 68 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCC---------------CCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CE
T ss_pred EEEEEEEEEeECCCCCCCCCC---------------cCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EE
Confidence 369999999999999998775 89999999975 45569999999999999999999997665 49
Q ss_pred EEEEEEecCCC----CccceEEEEeeeeee-cCceeeeeeeeccCCC-CCCCCCCeEEEEEEE
Q 001250 426 HFFVKDSDVVG----SELIGTVAIPVEQIY-SGGKVEGTYPVLNGSG-KPCKPGATLTLSIQY 482 (1114)
Q Consensus 426 ~f~V~D~D~~g----ddfIGqa~IpL~eL~-sG~~id~W~pLl~~~G-kp~k~~g~L~L~l~F 482 (1114)
.|+|||+|..+ ++|||++.|++.+|. .+.....|++|....+ +..+..|+|+|+|++
T Consensus 69 ~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 69 TISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp EEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred EEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 99999999865 799999999999883 3333358899976532 223446899999875
No 19
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.70 E-value=5.8e-17 Score=167.11 Aligned_cols=129 Identities=23% Similarity=0.334 Sum_probs=102.4
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCC
Q 001250 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA 422 (1114)
Q Consensus 343 ~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~ 422 (1114)
....++|+|+|++|++|++.+..++ +||||+|.+++. .+||+|+++++||+|||+|.|.+. +.
T Consensus 32 ~~~~~~L~V~V~~A~~L~~~~~~~~---------------sDPYv~v~~~~~-~~kT~v~~~tlnP~Wne~f~f~v~-~~ 94 (173)
T 2nq3_A 32 LTMKSQLQITVISAKLKENKKNWFG---------------PSPYVEVTVDGQ-SKKTEKCNNTNSPKWKQPLTVIVT-PV 94 (173)
T ss_dssp CSCCEEEEEEEEEEEECCCC--CCC---------------CCEEEEEEETTE-EEECCCCSSCSSCEEEEEEEEEEC-TT
T ss_pred cCCceEEEEEEEEeECCCCcccCCC---------------CCeEEEEEECCE-EeEccccCCCCCCeECCEEEEEeC-CC
Confidence 3456889999999999994443332 899999999994 469999999999999999999985 47
Q ss_pred ceEEEEEEEecCC-CCccceEEEEeeeeeecCc-----eeeeeeeeccCCCCCCCCCCeEEEEEEEecccccc
Q 001250 423 AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGG-----KVEGTYPVLNGSGKPCKPGATLTLSIQYTPMERLS 489 (1114)
Q Consensus 423 ~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~-----~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~~~~ 489 (1114)
..|.|+|||+|.. .++|||++.|+|.+|..+. .++.|++|...++. .+..|+|+|.+.+.+++...
T Consensus 95 ~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~-~~~~G~L~v~l~~l~~~~~~ 166 (173)
T 2nq3_A 95 SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEP-TETIGDLSICLDGLQLESEV 166 (173)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCT-TSEEEEEEEEEESEECC---
T ss_pred CEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCC-CcccEEEEEEEeeeecchhh
Confidence 8999999999986 5889999999999987431 23679999876432 23457999999999875443
No 20
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.65 E-value=4.8e-16 Score=152.97 Aligned_cols=105 Identities=14% Similarity=0.267 Sum_probs=89.9
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC----CEEEEeeeeecCCCCCeeceEEEEE-e
Q 001250 344 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVP-V 418 (1114)
Q Consensus 344 LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~----g~~v~RTrVI~nt~NPvWNE~F~f~-v 418 (1114)
...|.|.|+|++|++|+. |..+. +||||+|.+. +....||+++++++||+|||+|.|. +
T Consensus 17 ~~~~~L~V~V~~a~~L~~-~~~g~---------------~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v 80 (134)
T 2b3r_A 17 YRNGTLFIMVMHIKDLVT-EDGAD---------------PNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGY 80 (134)
T ss_dssp EETTEEEEEEEEEECCCC-TTSCC---------------CCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESC
T ss_pred ecCCEEEEEEEEeeCCCC-CCCCC---------------CCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCc
Confidence 356789999999999996 65553 8999999992 2344699999999999999999999 7
Q ss_pred cC---CCceEEEEEEEecCCC-CccceEEEEeeeeeecCceeeeeeeecc
Q 001250 419 AH---SAAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLN 464 (1114)
Q Consensus 419 a~---~~~~L~f~V~D~D~~g-ddfIGqa~IpL~eL~sG~~id~W~pLl~ 464 (1114)
.. ....|.|+|||+|..+ +++||++.|+|.++..+...+.||+|.+
T Consensus 81 ~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 81 SKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp CHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred CHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 53 2479999999999864 8899999999999998888899999974
No 21
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.65 E-value=2.8e-16 Score=157.44 Aligned_cols=105 Identities=26% Similarity=0.320 Sum_probs=92.0
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC--CEEEEeeeeecCCCCCeeceEEEEEecCC-
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~--g~~v~RTrVI~nt~NPvWNE~F~f~va~~- 421 (1114)
..+.|.|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||+|||+|.|.+...
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 104 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDMGGT---------------SDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 104 (152)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHH
T ss_pred CCCEEEEEEEEeECCCCccCCCC---------------cCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHH
Confidence 34789999999999999987665 8999999994 23446999999999999999999998643
Q ss_pred --CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeecc
Q 001250 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLN 464 (1114)
Q Consensus 422 --~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~ 464 (1114)
...|.|+|||+|.. .+++||++.|++.++..|...+.|++|.+
T Consensus 105 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 105 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred cCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 47899999999986 58999999999999998888899999975
No 22
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.64 E-value=4.2e-16 Score=155.47 Aligned_cols=105 Identities=24% Similarity=0.366 Sum_probs=91.8
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
..|.|.|+|++|++|+.+|..+. +||||+|.+.. ....||++++++.||+|||+|.|.+..
T Consensus 29 ~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 93 (149)
T 1a25_A 29 DREVLIVVVRDAKNLVPMDPNGL---------------SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKE 93 (149)
T ss_dssp SSSEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCS
T ss_pred cCCEEEEEEEEeeCCCCCCCCCC---------------cCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEecc
Confidence 46789999999999999987765 89999999974 345699999999999999999999875
Q ss_pred C--CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccC
Q 001250 421 S--AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1114)
Q Consensus 421 ~--~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~ 465 (1114)
. ...|.|+|||+|.. .+++||++.|++.+|..+ ..+.||+|.+.
T Consensus 94 ~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~ 140 (149)
T 1a25_A 94 SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ 140 (149)
T ss_dssp GGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred ccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCC
Confidence 4 36899999999986 588999999999999876 47899999764
No 23
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.64 E-value=2.9e-16 Score=155.25 Aligned_cols=105 Identities=26% Similarity=0.320 Sum_probs=91.5
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC--CEEEEeeeeecCCCCCeeceEEEEEecCC-
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~--g~~v~RTrVI~nt~NPvWNE~F~f~va~~- 421 (1114)
..|.|.|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||+|||+|.|.+...
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 96 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGT---------------SDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 96 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBC---------------CCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHH
T ss_pred CCCEEEEEEEEecCCCCCCCCCC---------------cCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhh
Confidence 45789999999999999887664 8999999993 33456999999999999999999998643
Q ss_pred --CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeecc
Q 001250 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLN 464 (1114)
Q Consensus 422 --~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~ 464 (1114)
...|+|+|||+|.. .+++||++.|+|.+|..+...+.|++|..
T Consensus 97 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 97 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred cCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 37899999999986 58999999999999999988999999963
No 24
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.64 E-value=2.7e-16 Score=157.91 Aligned_cols=107 Identities=23% Similarity=0.363 Sum_probs=90.2
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEe--
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPV-- 418 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~v-- 418 (1114)
..|.|.|+|++|++|+.+| .+. +||||+|.+.. ....||++++++.||+|||+|.|.+
T Consensus 25 ~~~~L~V~v~~a~~L~~~d-~g~---------------~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 88 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISKQ-PGT---------------CDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQE 88 (153)
T ss_dssp SSSEEEEEEEEEESCCCCS-SSC---------------CCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCG
T ss_pred CCCEEEEEEEEeeCCCCCC-CCC---------------CCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEeccc
Confidence 4578999999999999988 454 89999999932 2346999999999999999999998
Q ss_pred cCCCceEEEEEEEecCC-C-CccceEEEEeeeeeec-CceeeeeeeeccCCC
Q 001250 419 AHSAAEVHFFVKDSDVV-G-SELIGTVAIPVEQIYS-GGKVEGTYPVLNGSG 467 (1114)
Q Consensus 419 a~~~~~L~f~V~D~D~~-g-ddfIGqa~IpL~eL~s-G~~id~W~pLl~~~G 467 (1114)
......|.|+|||+|.. + ++|||++.|++.+|.. +...++||+|.+...
T Consensus 89 ~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~ 140 (153)
T 3fbk_A 89 EDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHL 140 (153)
T ss_dssp GGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTG
T ss_pred HHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhh
Confidence 44446799999999985 3 8999999999999984 778899999987543
No 25
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.64 E-value=1.2e-16 Score=157.55 Aligned_cols=109 Identities=25% Similarity=0.298 Sum_probs=93.3
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCE-------------EEEeeeeecCCCCCe
Q 001250 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGA-------------VVGRTFVISNSEDPV 409 (1114)
Q Consensus 343 ~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~-------------~v~RTrVI~nt~NPv 409 (1114)
.+..|.|.|+|++|++|+.+|..+. +||||+|.+.+. ...||+++++++||+
T Consensus 14 ~y~~~~L~V~v~~a~~L~~~d~~g~---------------~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~ 78 (142)
T 1rh8_A 14 NYDLGNLIIHILQARNLVPRDNNGY---------------SDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78 (142)
T ss_dssp EEETTEEEEEEEEEESCCCCSSSSC---------------SCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCE
T ss_pred EEcCCEEEEEEEEecCCCCCCCCCC---------------CCceEEEEEecCCCcccccccccccceeeccccCCCCCCC
Confidence 3447899999999999999997765 899999999863 235999999999999
Q ss_pred eceEEEEE-ecC---CCceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCC
Q 001250 410 WQQHFYVP-VAH---SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGS 466 (1114)
Q Consensus 410 WNE~F~f~-va~---~~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~ 466 (1114)
|||+|.|. +.. ....|.|+|||+|.. .+++||++.|++.++..+...++||+|.+..
T Consensus 79 wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~ 140 (142)
T 1rh8_A 79 WNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140 (142)
T ss_dssp EEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred CCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence 99999997 542 357899999999996 4889999999999998777788999997543
No 26
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.64 E-value=3.1e-16 Score=154.12 Aligned_cols=107 Identities=23% Similarity=0.312 Sum_probs=90.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC----CEEEEeeeeecCCCCCeeceEEEEEecC-
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAH- 420 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~----g~~v~RTrVI~nt~NPvWNE~F~f~va~- 420 (1114)
.+.|.|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||+|||+|.|.+..
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~ 84 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRP---------------RNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 84 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCC---------------CCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCT
T ss_pred CCEEEEEEEEccCCCCcCCCCC---------------CCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCH
Confidence 4689999999999999987765 8999999993 2344699999999999999999999532
Q ss_pred C---CceEEEEEEEecCCC---CccceEEEEeeeeeecCceeeeeeeeccCCCC
Q 001250 421 S---AAEVHFFVKDSDVVG---SELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK 468 (1114)
Q Consensus 421 ~---~~~L~f~V~D~D~~g---ddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gk 468 (1114)
. ...|+|+|||+|..+ +++||++.|+|.++.... .+.||+|.+.+..
T Consensus 85 ~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g 137 (141)
T 1v27_A 85 REFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSG 137 (141)
T ss_dssp TGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSC
T ss_pred HHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcccccC
Confidence 2 378999999999865 899999999999987544 7899999875443
No 27
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=6.7e-16 Score=152.45 Aligned_cols=105 Identities=23% Similarity=0.251 Sum_probs=91.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC--CEEEEeeeeecCCCCCeeceEEEEEecC---
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAH--- 420 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~--g~~v~RTrVI~nt~NPvWNE~F~f~va~--- 420 (1114)
.+.|+|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||+|||+|.|.+..
T Consensus 25 ~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 89 (141)
T 2d8k_A 25 ESTLTVKIMKAQELPAKDFSGT---------------SDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 89 (141)
T ss_dssp SCCEEEEEEEEESCCCCSSSSC---------------CCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHH
T ss_pred CCEEEEEEEEeECCCCCCCCCC---------------CCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHH
Confidence 4679999999999999987665 8999999994 3345699999999999999999998532
Q ss_pred -CCceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccC
Q 001250 421 -SAAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1114)
Q Consensus 421 -~~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~ 465 (1114)
....|.|+|||+|.. .+++||++.|++.+|..+...+.|++|...
T Consensus 90 ~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 136 (141)
T 2d8k_A 90 VVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136 (141)
T ss_dssp HTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred cccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence 247899999999985 589999999999999988888999999754
No 28
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.63 E-value=4.8e-16 Score=150.63 Aligned_cols=101 Identities=25% Similarity=0.339 Sum_probs=83.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC----CEEEEeeeeecCCCCCeeceEEEEEecC-
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAH- 420 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~----g~~v~RTrVI~nt~NPvWNE~F~f~va~- 420 (1114)
.|.|.|+|++|++|+.+|..+. +||||+|.+. +...+||++++++.||+|||+|.|.+..
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 81 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRP---------------RNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 81 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCC---------------BCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCG
T ss_pred CCEEEEEEEEeeCCCCCCCCCC---------------CCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCH
Confidence 4689999999999999987765 8999999992 3445699999999999999999999532
Q ss_pred ---CCceEEEEEEEecCCC---CccceEEEEeeeeeecCceeeeeeee
Q 001250 421 ---SAAEVHFFVKDSDVVG---SELIGTVAIPVEQIYSGGKVEGTYPV 462 (1114)
Q Consensus 421 ---~~~~L~f~V~D~D~~g---ddfIGqa~IpL~eL~sG~~id~W~pL 462 (1114)
....|.|+|||+|..+ +++||++.|++.++.... .++||+|
T Consensus 82 ~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 82 REFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp GGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred HHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 2478999999999865 899999999999987544 7899998
No 29
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.63 E-value=1.8e-15 Score=165.85 Aligned_cols=127 Identities=24% Similarity=0.316 Sum_probs=107.5
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC--EEEEeeeeecCCCCCeeceEEEEEecCC-
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~~v~RTrVI~nt~NPvWNE~F~f~va~~- 421 (1114)
..|.|.|+|++|++|+.+|..+. +||||+|.+.. ....||+++++++||+|||+|.|.+...
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~ 81 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGT---------------SDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 81 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSS---------------CCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGG
T ss_pred CCCEEEEEEEEeeCCCCCCCCCC---------------CCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHH
Confidence 35789999999999999987665 89999999953 2345999999999999999999998653
Q ss_pred --CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEeccc
Q 001250 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPME 486 (1114)
Q Consensus 422 --~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~ 486 (1114)
...|+|+|+|+|.. .+++||++.|+|.+|..+...+.|++|....+......|+|++.++|.|..
T Consensus 82 ~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~ 149 (284)
T 2r83_A 82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTA 149 (284)
T ss_dssp CTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTT
T ss_pred hCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcC
Confidence 47899999999986 589999999999999988888999999876543333457999999998753
No 30
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.63 E-value=7.6e-16 Score=150.57 Aligned_cols=105 Identities=25% Similarity=0.377 Sum_probs=91.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC----CEEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~----g~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
..|.|.|+|++|++|+.+|..+. +||||+|.+. +....||++++++.||+|||+|.|.+..
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~ 78 (137)
T 3rdl_A 14 TDEKLHVTVRDAKNLIPMDPNGL---------------SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKP 78 (137)
T ss_dssp ETTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEECCTTCCCCEECCCCCSCSSCEEEEEEEEECCG
T ss_pred cCCEEEEEEEEeeCCCCCCCCCC---------------CCeeEEEEEEcCCCCCeeecCceEcCCCCCCcccEEEEEcCc
Confidence 56899999999999999988765 8999999994 3344699999999999999999999865
Q ss_pred C--CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccC
Q 001250 421 S--AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1114)
Q Consensus 421 ~--~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~ 465 (1114)
. ...|.|+|||+|.. .+++||++.|++.+|..+. .++||+|.+.
T Consensus 79 ~~~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 125 (137)
T 3rdl_A 79 SDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQ 125 (137)
T ss_dssp GGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHSC-EEEEEECBCH
T ss_pred hhcCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCc-cCceEECcCc
Confidence 4 35899999999986 5889999999999998665 7899999865
No 31
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.63 E-value=4.6e-16 Score=159.40 Aligned_cols=107 Identities=20% Similarity=0.270 Sum_probs=92.8
Q ss_pred eeceEEEEEEEEeeCCCCCCC-CCcccccccccccCCCCCCCcEEEEEECC--E--EEEeeeeecCCCCCeeceEEEEEe
Q 001250 344 LLHGNLDIWIYSAKNLPNMDM-FHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPV 418 (1114)
Q Consensus 344 LlhGtL~VtI~eAk~L~~~D~-~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~--~v~RTrVI~nt~NPvWNE~F~f~v 418 (1114)
+..|.|.|+|++|++|+.+|. .+. +||||+|.+.. . ..+||+|+++++||+|||+|.|.+
T Consensus 27 y~~~~L~V~v~~a~~L~~~d~~~g~---------------~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v 91 (171)
T 2q3x_A 27 DKKGQLEVEVIRARSLTQKPGSKST---------------PAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDE 91 (171)
T ss_dssp EETTEEEEEEEEEESCCCCC---CC---------------CEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSS
T ss_pred ECCCEEEEEEEEeeCCCCCCcCCCC---------------CCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEe
Confidence 357899999999999999985 454 89999999863 2 356999999999999999999999
Q ss_pred cCCCceEEEEEE-EecCC-CCccceEEEEeeeeeecCceeeeeeeeccC
Q 001250 419 AHSAAEVHFFVK-DSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1114)
Q Consensus 419 a~~~~~L~f~V~-D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~ 465 (1114)
......|.|+|| |+|.. .+++||++.|+|.++..+...+.||+|...
T Consensus 92 ~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 92 SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp CCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred cCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 777789999999 99986 478999999999999988888999999754
No 32
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=159.18 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=89.7
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC---E--EEEeeeeecCCCCCeeceEEEEEecC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG---A--VVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g---~--~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
.|.|.|+|++|++|+.+|..+. +||||+|.+.. . ...||+++++++||+|||+|.|.+..
T Consensus 42 ~~~L~V~Vi~a~~L~~~d~~g~---------------sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~ 106 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSALLQQQD---------------QKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY 106 (155)
T ss_dssp TTEEEEEEEEEECGGGTCCSCC---------------SEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCH
T ss_pred CCEEEEEEEEccCcCCcccCCC---------------CCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCH
Confidence 4689999999999999997765 89999999965 2 24699999999999999999999865
Q ss_pred C---CceEEEEEEEecCC-CCccceEEEEeeeeee-cCceeeeeeeec
Q 001250 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIY-SGGKVEGTYPVL 463 (1114)
Q Consensus 421 ~---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~-sG~~id~W~pLl 463 (1114)
. ...|+|+|||+|.. ++++||++.|++.++. .+...+.||+|+
T Consensus 107 ~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 3 46899999999985 5899999999999996 467788999996
No 33
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=155.38 Aligned_cols=108 Identities=15% Similarity=0.252 Sum_probs=90.6
Q ss_pred ceEEEEEEEEeeCCCCCC-CCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 346 HGNLDIWIYSAKNLPNMD-MFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D-~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
.|.|.|+|++|++|+.+| ..+. +||||+|.+.. ....||++++++.||+|||+|.|.+..
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 86 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKR---------------SNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPE 86 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTB---------------CCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCS
T ss_pred CCEEEEEEEEecCCCCcccCCCC---------------CCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeCh
Confidence 478999999999999888 4444 89999999963 224699999999999999999999876
Q ss_pred C---CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCC
Q 001250 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK 468 (1114)
Q Consensus 421 ~---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gk 468 (1114)
. ...|.|+|||+|.. .+++||++.|+|.++..+...+.|++|..+.+.
T Consensus 87 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~ 138 (148)
T 3fdw_A 87 SLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA 138 (148)
T ss_dssp TTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC---
T ss_pred hHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcccc
Confidence 4 35799999999986 488999999999999877778899999865544
No 34
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.1e-16 Score=151.88 Aligned_cols=106 Identities=23% Similarity=0.261 Sum_probs=89.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC--E--EEEeeeeecCCCCCeeceEEEEEecCC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--A--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~--~v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
.|.|.|+|++|++|+.+|..+ +||||+|.+.. . ...||++++++.||+|||+|.|.+...
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g----------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 86 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG----------------SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLP 86 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC----------------CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHH
T ss_pred CCEEEEEEEEeECCCCCCCCC----------------CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHH
Confidence 468999999999999887643 79999999942 2 345999999999999999999998643
Q ss_pred ---CceEEEEEEEecCCC---CccceEEEEeeeeeecCceeeeeeeeccCCC
Q 001250 422 ---AAEVHFFVKDSDVVG---SELIGTVAIPVEQIYSGGKVEGTYPVLNGSG 467 (1114)
Q Consensus 422 ---~~~L~f~V~D~D~~g---ddfIGqa~IpL~eL~sG~~id~W~pLl~~~G 467 (1114)
...|.|+|||+|..+ +++||++.|++.++..+...+.|++|....+
T Consensus 87 ~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 87 EVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138 (142)
T ss_dssp HHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred HhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence 358999999999864 4699999999999987777889999986543
No 35
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.62 E-value=1.3e-15 Score=150.41 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=87.3
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC---CEEEEeeeeecCCCCCeeceEEEEEecCC-
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA---GAVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~---g~~v~RTrVI~nt~NPvWNE~F~f~va~~- 421 (1114)
.+.|.|+|++|+ ++|..+. +||||+|.+. +....||+|+++++||+|||+|.|.+...
T Consensus 25 ~~~L~V~v~~a~---~~d~~g~---------------sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~ 86 (138)
T 1wfm_A 25 KAELFVTRLEAV---TSNHDGG---------------CDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE 86 (138)
T ss_dssp TTEEEEEEEEEE---CCCCSSC---------------CCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred CCEEEEEEEEEE---cCCCCCC---------------cceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHH
Confidence 468999999999 3676664 8999999993 44456999999999999999999998654
Q ss_pred --CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccC
Q 001250 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNG 465 (1114)
Q Consensus 422 --~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~ 465 (1114)
...|+|+|||+|.. .+++||++.|+|.++..+...+.|++|...
T Consensus 87 l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred cCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 46899999999985 589999999999999867778899999754
No 36
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.59 E-value=2.3e-15 Score=148.63 Aligned_cols=105 Identities=24% Similarity=0.344 Sum_probs=90.5
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEE-ec
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVP-VA 419 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~-va 419 (1114)
..|.|.|+|++|++|+.+|..+. +||||+|.+.+ ....||++++++.||+|||+|.|. +.
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~ 91 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGL---------------ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGIT 91 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSC---------------CCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCC
T ss_pred CCCEEEEEEEEecCCCCCCCCCC---------------CCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccC
Confidence 45789999999999999987664 89999999975 345699999999999999999998 54
Q ss_pred CC---CceEEEEEEEecCCC-CccceEEEEeeeeeecCceeeeeeeecc
Q 001250 420 HS---AAEVHFFVKDSDVVG-SELIGTVAIPVEQIYSGGKVEGTYPVLN 464 (1114)
Q Consensus 420 ~~---~~~L~f~V~D~D~~g-ddfIGqa~IpL~eL~sG~~id~W~pLl~ 464 (1114)
.. ...|.|+|||+|..+ +++||++.|++.+|..+...+.|++|..
T Consensus 92 ~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 92 EEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp HHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred HHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 32 268999999999864 7899999999999998888888998853
No 37
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.59 E-value=1.4e-15 Score=152.10 Aligned_cols=107 Identities=22% Similarity=0.338 Sum_probs=85.4
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEE--CCEE--EEeeeeecCCCCCeeceEEEEEecCC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAV--VGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L--~g~~--v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
.|.|.|+|++|++|+.+|..+. +||||+|.+ ++.. ..||+++++++||+|||+|.|.+...
T Consensus 29 ~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 93 (153)
T 1w15_A 29 TNTLTVVVLKARHLPKSDVSGL---------------SDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE 93 (153)
T ss_dssp TTEEEEEEEEEESCC------C---------------CCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSS
T ss_pred CCEEEEEEEEeECCCCcCCCCC---------------CCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHH
Confidence 4689999999999999987765 899999999 5543 45999999999999999999998765
Q ss_pred C---ceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCC
Q 001250 422 A---AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKP 469 (1114)
Q Consensus 422 ~---~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp 469 (1114)
. ..|+|+|||+|.. .+++||++.|++.+ .+...+.|++|++..+++
T Consensus 94 ~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~p~~~ 143 (153)
T 1w15_A 94 SLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICDFPRRQ 143 (153)
T ss_dssp SSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHSTTCC
T ss_pred HhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHhCCCCe
Confidence 2 6899999999986 58899999999988 345567899988755554
No 38
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.58 E-value=9.5e-16 Score=149.86 Aligned_cols=108 Identities=19% Similarity=0.301 Sum_probs=91.1
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecCC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
.|.|.|+|++|++|+.+|..+. +||||+|.+.+ ...+||++++++.||+|||+|.|.+...
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~g~---------------~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~ 79 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDIGGT---------------SDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79 (138)
T ss_dssp TTEEEEEEEEEESCCCCBTTTB---------------CCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGG
T ss_pred CCeEEEEEEEeeCCCCcCCCCC---------------cCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChh
Confidence 4789999999999999988665 89999999964 2456999999999999999999998655
Q ss_pred C---ceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 422 A---AEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 422 ~---~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
. ..|.|+|||+|.. .+++||++.|++.++.. ..+.|++|+...++++
T Consensus 80 ~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~~--~~~~W~~l~~~~~~~~ 130 (138)
T 3n5a_A 80 KLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPG--EVKHWKDMIARPRQPV 130 (138)
T ss_dssp GGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCHH--HHHHHHHHHHSTTCCE
T ss_pred hcCceEEEEEEEECCCCCCCcEEEEEEEccccCCh--HHHHHHHHHhCCCCeE
Confidence 4 6899999999986 58899999999998653 3468999987766643
No 39
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.58 E-value=5.9e-15 Score=145.14 Aligned_cols=105 Identities=24% Similarity=0.365 Sum_probs=87.9
Q ss_pred eceEEEEEEEEeeCCCCCCCC-CcccccccccccCCCCCCCcEEEEEECC--EEEEeeeeecCCCCCeeceEEEEE-ecC
Q 001250 345 LHGNLDIWIYSAKNLPNMDMF-HKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVP-VAH 420 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~-g~~~~~~~~k~~~~~itsDPYV~V~L~g--~~v~RTrVI~nt~NPvWNE~F~f~-va~ 420 (1114)
..+.|.|+|++|++|+.+|.+ +. +||||+|.+.. ...+||+++++++||+|||+|.|. +..
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~---------------~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~ 84 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMT---------------SDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPY 84 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTB---------------CEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCS
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCC---------------CCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCH
Confidence 356899999999999999875 54 89999999963 345699999999999999999996 654
Q ss_pred C---CceEEEEEEEecCC-CCccceEEEEeeeeeecCc-eeeeeeeecc
Q 001250 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGG-KVEGTYPVLN 464 (1114)
Q Consensus 421 ~---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~-~id~W~pLl~ 464 (1114)
. ...|.|+|||+|.. .+++||++.|+|.+|..+. ....|++|..
T Consensus 85 ~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 85 TQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp TTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred HHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 3 36899999999986 5889999999999998653 3456798864
No 40
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.58 E-value=5.2e-15 Score=149.11 Aligned_cols=105 Identities=26% Similarity=0.307 Sum_probs=86.1
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
..|.|.|+|++|++|+.+|..+. +||||+|.+.. ...+||++++++.||+|||+|.|.+..
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~~g~---------------~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 87 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDVGGL---------------SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 87 (159)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred CCCEEEEEEEEeeCCCCccCCCC---------------CCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCH
Confidence 35789999999999999987765 89999999953 245699999999999999999999865
Q ss_pred C---CceEEEEEEEecCC-CCccceEEEEeeeeee------------cCceeeeeeeecc
Q 001250 421 S---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIY------------SGGKVEGTYPVLN 464 (1114)
Q Consensus 421 ~---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~------------sG~~id~W~pLl~ 464 (1114)
. ...|.|+|||+|.. .+++||++.|++..+. .+..+++|++|..
T Consensus 88 ~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (159)
T ss_dssp GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred HHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence 4 36799999999986 4899999999998652 2345566776653
No 41
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.57 E-value=6.7e-15 Score=149.53 Aligned_cols=106 Identities=22% Similarity=0.344 Sum_probs=89.2
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECC----EEEEeeeeecCCCCCeeceEEEEEecCC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG----AVVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g----~~v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
.|.|.|+|++|++|+.+|.++. +||||+|.+.+ ....||++++++.||+|||+|.|.+...
T Consensus 36 ~~~L~V~v~~a~~L~~~d~~g~---------------~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 100 (166)
T 2cm5_A 36 QGGLIVGIIRCVHLAAMDANGY---------------SDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100 (166)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred CCEEEEEEEEeECCCCccCCCC---------------CCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchH
Confidence 5789999999999999987765 89999999975 2456999999999999999999998653
Q ss_pred ---CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCC
Q 001250 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGK 468 (1114)
Q Consensus 422 ---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gk 468 (1114)
...|.|+|||+|.. .+++||++.|++.++.. ..+.|++|++..++
T Consensus 101 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~~~~~ 149 (166)
T 2cm5_A 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE--RLKHWYECLKNKDK 149 (166)
T ss_dssp GGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHH--HHHHHHHHHHCTTC
T ss_pred hcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCc--hhHHHHHHHhCCCC
Confidence 36899999999986 48899999999998643 34578887765554
No 42
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.56 E-value=1.2e-14 Score=143.17 Aligned_cols=116 Identities=19% Similarity=0.258 Sum_probs=81.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeec-CCCCCeeceEEEEEecCCCce
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAHSAAE 424 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~-nt~NPvWNE~F~f~va~~~~~ 424 (1114)
.|.|.|+|++|++|+. .+. +||||+|. +... ||++++ ++.||+|||+|.|.+......
T Consensus 4 ~~~L~V~V~~A~~l~~---~g~---------------~DPYv~v~--~~~~-kt~~~~~~t~nP~WnE~f~f~v~~~~~~ 62 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA---QEK---------------FNTYVTLK--VQNV-KSTTIAVRGSQPSWEQDFMFEINRLDLG 62 (131)
T ss_dssp CEEEEEEEEEEECSSC---GGG---------------CEEEEEEE--ETTE-EEECCCEESSSCEEEEEEEEEECCCSSE
T ss_pred ceEEEEEEEEeECCCC---CCC---------------cCeEEEEE--ecCE-EEeEecCCCCCceECCEEEEEEeCCCCe
Confidence 4789999999998852 333 89999999 2222 566555 699999999999999887788
Q ss_pred EEEEEEEecCCCCccceEEEEeeeeeecCc------eeeeeeeeccCCCCCCC----CCCeEEEEEEE
Q 001250 425 VHFFVKDSDVVGSELIGTVAIPVEQIYSGG------KVEGTYPVLNGSGKPCK----PGATLTLSIQY 482 (1114)
Q Consensus 425 L~f~V~D~D~~gddfIGqa~IpL~eL~sG~------~id~W~pLl~~~Gkp~k----~~g~L~L~l~F 482 (1114)
|.|+|||+|..+|++||++.|+|++|.... -...|+.+..++|+.++ .+..+.+.++|
T Consensus 63 L~~~V~D~d~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 63 LTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp EEEEEEECCSSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred EEEEEEECCCCCCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 999999999667899999999999986432 11234444444544332 23457777776
No 43
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.9e-15 Score=148.00 Aligned_cols=110 Identities=19% Similarity=0.258 Sum_probs=88.4
Q ss_pred ceEEEEEEEEeeCCCC-CCCCCcccccccccccCCCCCCCcEEEEEECC--EEEEeeeeecCCCCCeeceEEEEEecCC-
Q 001250 346 HGNLDIWIYSAKNLPN-MDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAHS- 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~-~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~~v~RTrVI~nt~NPvWNE~F~f~va~~- 421 (1114)
.|.|.|+|++|++|+. +|..+. .+. ...+||||+|.+.. ....||+|++++.||+|||+|.|.+...
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~--~~~-------~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 95 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGS--RQD-------MAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLE 95 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCS--SCT-------TCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHH
T ss_pred CCEEEEEEEEEeCCCCccccccc--ccc-------CCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHH
Confidence 5689999999999998 454431 000 11389999999963 2346999999999999999999998653
Q ss_pred --CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeecc
Q 001250 422 --AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLN 464 (1114)
Q Consensus 422 --~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~ 464 (1114)
...|+|+|||+|.. .+++||++.|+|.+|..+...+.|++|..
T Consensus 96 l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 141 (147)
T 2enp_A 96 AQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP 141 (147)
T ss_dssp HHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred hccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence 35899999999985 48899999999999987766778999963
No 44
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.54 E-value=1.8e-14 Score=151.41 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=97.5
Q ss_pred hHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccccccccC
Q 001250 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTH 625 (1114)
Q Consensus 546 ~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~ 625 (1114)
.|.+|+++|.+||++|+|+.|.|. ...|.++|++|++|||+||||+ |......
T Consensus 47 ~~~~ll~~I~~A~~sI~i~~y~~~-------------~~~i~~aL~~aa~rGV~Vrii~-D~~~~~~------------- 99 (196)
T 4ggj_A 47 SLSRLLRALLAARSSLELCLFAFS-------------SPQLGRAVQLLHQRGVRVRVIT-DCDYMAL------------- 99 (196)
T ss_dssp HHHHHHHHHHTCSSEEEEEESCBC-------------CHHHHHHHHHHHHTTCEEEEEE-SSCCC---------------
T ss_pred HHHHHHHHHHHhheEEEEEEEEeC-------------CHHHHHHHHHHHHcCCcEEEEE-ecccccc-------------
Confidence 699999999999999999988652 2469999999999999999996 6432110
Q ss_pred cHHHHHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCCCcc
Q 001250 626 DEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLF 705 (1114)
Q Consensus 626 d~~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l~ 705 (1114)
.......+...||+|..... ....|+|++|||+ .++|+||.|++...+..
T Consensus 100 ~~~~~~~l~~~gi~v~~~~~----------------~~~~H~K~~viD~--------~~~~~GS~N~t~~~~~~------ 149 (196)
T 4ggj_A 100 NGSQIGLLRKAGIQVRHDQD----------------LGYMHHKFAIVDK--------KVLITGSLNWTTQAIQN------ 149 (196)
T ss_dssp -CCHHHHHHHTTCEEEECCS----------------SSCCCCEEEEETT--------TEEEEESCCBCHHHHHH------
T ss_pred cHHHHHHHHhcCCCcccccc----------------cccccCcEEEEcc--------eEEEecCccCChhhhcc------
Confidence 11234567789999875321 1357999999999 79999999987643211
Q ss_pred cccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEe-CHHHHHHHHHHHHHHHHhcC
Q 001250 706 RTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKID-GPAAYDVLTNFEERWRKASK 761 (1114)
Q Consensus 706 ~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVe-GPAA~Dl~~~F~qRWn~a~~ 761 (1114)
-| +..+.+. ++.|..+...|++.|+....
T Consensus 150 --------------------------n~-E~~~~i~~~~~~~~~~~~F~~~W~~~~p 179 (196)
T 4ggj_A 150 --------------------------NR-ENVLIMEDTEYVRLFLEEFERIWEEFDP 179 (196)
T ss_dssp --------------------------CC-EEEEEECCHHHHHHHHHHHHHHHHHTCC
T ss_pred --------------------------cc-eeEEEEECHHHHHHHHHHHHHHHHhCCC
Confidence 12 3444444 55799999999999997643
No 45
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.53 E-value=2.9e-14 Score=141.89 Aligned_cols=116 Identities=16% Similarity=0.315 Sum_probs=103.9
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeec-CCCCCeeceEEEEEecCC---Cc
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAHS---AA 423 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~-nt~NPvWNE~F~f~va~~---~~ 423 (1114)
.|+|+|..|.+|+. + +|||++|.+.+.+. |||+++ ++.||+|||.|.|++..+ .+
T Consensus 22 sL~V~l~~a~~Lpg-----~---------------~Dp~akv~FRg~k~-kTkvi~~~~~npvfnE~F~wpl~~~ld~~e 80 (144)
T 3l9b_A 22 ALIVHLKTVSELRG-----R---------------ADRIAKVTFRGQSF-YSRVLENCEDVADFDETFRWPVASSIDRNE 80 (144)
T ss_dssp EEEEEEEEEESCCS-----C---------------EEEEEEEEETTEEE-ECCCEEEECSCEEEEEEEEEEESSCCCTTC
T ss_pred EEEEEEEEecCCCC-----C---------------CCCeEEEEEeccce-eeEEeccCCCCceEcceEEecCCCCCCCCC
Confidence 49999999999982 2 89999999998885 999998 599999999999999755 47
Q ss_pred eEEEEEEEecC-CCCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEeccc
Q 001250 424 EVHFFVKDSDV-VGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPME 486 (1114)
Q Consensus 424 ~L~f~V~D~D~-~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~~ 486 (1114)
.|.|.|+|++. .++++||+++|+|++|..+..+..+.+|+|.++++.+ ++|.|.|+|.|.+
T Consensus 81 ~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~--a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 81 VLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIK--TSLSMEVRYQAAD 142 (144)
T ss_dssp EEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEE--EEEEEEEEEEETT
T ss_pred EEEEEEEECccccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccc--cEEEEEEEecCCC
Confidence 89999999998 4689999999999999987778888999999999875 7999999999864
No 46
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.48 E-value=3.2e-15 Score=177.09 Aligned_cols=124 Identities=22% Similarity=0.355 Sum_probs=23.4
Q ss_pred eeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCC---CCCeeceEEEEEec
Q 001250 343 LLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNS---EDPVWQQHFYVPVA 419 (1114)
Q Consensus 343 ~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt---~NPvWNE~F~f~va 419 (1114)
....|.|+|+|++|++|+.+ .||||+|.+++...+||++++++ .||+|||+|.|.+.
T Consensus 7 ~r~~~~L~V~VieAk~L~~~--------------------ddpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~ 66 (483)
T 3bxj_A 7 RRVDNVLKLWIIEARELPPK--------------------KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66 (483)
T ss_dssp EEEEECC-----------------------------------------------------------------CCEECC--
T ss_pred ceeccEEEEEEEEcCCcCCC--------------------CCCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecC
Confidence 34568899999999999864 38999999999877899999999 99999999999976
Q ss_pred CCCceEEEEEEEe-c----CCCCccceEEEEeeeeeecCceeeeeeeeccCCC---------------------CCCCCC
Q 001250 420 HSAAEVHFFVKDS-D----VVGSELIGTVAIPVEQIYSGGKVEGTYPVLNGSG---------------------KPCKPG 473 (1114)
Q Consensus 420 ~~~~~L~f~V~D~-D----~~gddfIGqa~IpL~eL~sG~~id~W~pLl~~~G---------------------kp~k~~ 473 (1114)
.....|.|+|||. | ..++++||++.|++++|..|...+.||+|.+.++ +..+.+
T Consensus 67 ~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 146 (483)
T 3bxj_A 67 PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGC 146 (483)
T ss_dssp ----------------------------------------CCEECC----------------------------------
T ss_pred CCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCC
Confidence 5568899999994 5 3579999999999999998888899999976543 112335
Q ss_pred CeEEEEEEEeccc
Q 001250 474 ATLTLSIQYTPME 486 (1114)
Q Consensus 474 g~L~L~l~F~p~~ 486 (1114)
|.|+|+++|.+..
T Consensus 147 G~lrL~v~~~~~~ 159 (483)
T 3bxj_A 147 PAVRLKARYQTMS 159 (483)
T ss_dssp ----CEEEEEECC
T ss_pred ceEEEEEEeeeee
Confidence 7899999998754
No 47
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.48 E-value=9.9e-14 Score=153.73 Aligned_cols=124 Identities=26% Similarity=0.328 Sum_probs=98.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC--CEEEEeeeeecCCCCCeeceEEEEEecCC--
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GAVVGRTFVISNSEDPVWQQHFYVPVAHS-- 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~--g~~v~RTrVI~nt~NPvWNE~F~f~va~~-- 421 (1114)
.|.|.|+|++|++|+.+|..+. +||||+|.+. +....||+|+++++||+|||+|.|.+...
T Consensus 19 ~~~L~v~v~~a~~L~~~d~~g~---------------~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 83 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDSNGF---------------SDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 83 (296)
T ss_dssp SCEEEEEEEEEECCCCCSTTSC---------------CCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred CCEEEEEEEEeECCCCcCCCCC---------------cCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHh
Confidence 4689999999999999998765 8999999992 34445999999999999999999998643
Q ss_pred -CceEEEEEEEecCC-CCccceEEEEe-eeeeec-CceeeeeeeeccCCCCCCCCCCeEEEEEEEecc
Q 001250 422 -AAEVHFFVKDSDVV-GSELIGTVAIP-VEQIYS-GGKVEGTYPVLNGSGKPCKPGATLTLSIQYTPM 485 (1114)
Q Consensus 422 -~~~L~f~V~D~D~~-gddfIGqa~Ip-L~eL~s-G~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p~ 485 (1114)
...|+|+|||+|.. .+++||++.|+ +.++.. +...+.|++|....++. ...|+|++.+.|.+.
T Consensus 84 ~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~vsl~y~~~ 150 (296)
T 1dqv_A 84 AQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEK-ADLGELNFSLCYLPT 150 (296)
T ss_dssp SSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCC-SCCCEEEEEEEEETT
T ss_pred cCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccc-cccceEEEEEEeccc
Confidence 35899999999985 58999999996 444442 33456899997655433 235799999998763
No 48
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.47 E-value=1.5e-13 Score=162.51 Aligned_cols=116 Identities=18% Similarity=0.279 Sum_probs=98.5
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCCC-ce
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHSA-AE 424 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~~-~~ 424 (1114)
.|+|.|+|++|++|+.+|.+|. +||||+|.+++.+ +||+|+++++||+|||+|.|.+.... ..
T Consensus 386 ~~~l~v~v~~a~~L~~~d~~~~---------------sdpyv~v~~~~~~-~~T~~~~~t~nP~w~e~f~f~~~~~~~~~ 449 (510)
T 3jzy_A 386 IGRLMVHVIEATELKACKPNGK---------------SNPYCEISMGSQS-YTTRTIQDTLNPKWNFNCQFFIKDLYQDV 449 (510)
T ss_dssp CEEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEETTEE-EECCCCSSCSSCEEEEEEEEEESCTTTCE
T ss_pred CceEEEEeceeecCCCCCCCCC---------------CCeEEEEEECCee-ccCCccCCCCCCccCceEEEEecCCCCCE
Confidence 4689999999999999998775 8999999998876 59999999999999999999997664 78
Q ss_pred EEEEEEEecCCC-CccceEEEEeeeeeecCce----eeeeeeeccCCCCCCCCCCeEEEEEEEe
Q 001250 425 VHFFVKDSDVVG-SELIGTVAIPVEQIYSGGK----VEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1114)
Q Consensus 425 L~f~V~D~D~~g-ddfIGqa~IpL~eL~sG~~----id~W~pLl~~~Gkp~k~~g~L~L~l~F~ 483 (1114)
|+|+|||+|..+ +++||++.|++.+|..|.. ++.|++|.+. ..|+|+|.+.+.
T Consensus 450 l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------~~G~i~l~~~l~ 507 (510)
T 3jzy_A 450 LCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------PTGEVWVRFDLQ 507 (510)
T ss_dssp EEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------SSCEEEEEEEEE
T ss_pred EEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC------CCceEEEEEEEE
Confidence 999999999964 8999999999999986643 6789998643 235777776653
No 49
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.46 E-value=9.6e-14 Score=142.45 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=71.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeec-CCCCCeeceEEEEEecCCCceE
Q 001250 347 GNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVIS-NSEDPVWQQHFYVPVAHSAAEV 425 (1114)
Q Consensus 347 GtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~-nt~NPvWNE~F~f~va~~~~~L 425 (1114)
|.|.|+|++|++|+. .+. +||||+|. ++. .||++++ ++.||+|||+|.|.+......|
T Consensus 14 ~~L~V~V~~A~~l~~---~g~---------------~DPYV~v~--~~~-~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L 72 (167)
T 2cjs_A 14 SLLCVGVKKAKFDGA---QEK---------------FNTYVTLK--VQN-VESTTIAVRGSQPSWEQDFMFEINRLDLGL 72 (167)
T ss_dssp CEEEEEEEEEECSSC---GGG---------------CEEEEEEE--ETT-EEEECCCEESSSCEEEEEEEEECCCTTSEE
T ss_pred EEEEEEEEEEECCCC---CCC---------------CCeEEEEE--ecc-eEEEEecCCCCCCCCCCEEEEEeeCCCCEE
Confidence 569999999998842 333 89999999 223 3677765 5999999999999998887889
Q ss_pred EEEEEEecCCCCccceEEEEeeeeeec
Q 001250 426 HFFVKDSDVVGSELIGTVAIPVEQIYS 452 (1114)
Q Consensus 426 ~f~V~D~D~~gddfIGqa~IpL~eL~s 452 (1114)
.|+|||+|..+|++||++.|+|++|..
T Consensus 73 ~~~V~D~d~~~dd~iG~~~i~L~~l~~ 99 (167)
T 2cjs_A 73 TVEVWNKGLIWDTMVGTVWIPLRTIRQ 99 (167)
T ss_dssp EEEEEECCSSCCEEEEEEEEEGGGSCB
T ss_pred EEEEEECCCCCCceEEEEEEEHHHhcc
Confidence 999999996679999999999999864
No 50
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.44 E-value=5.2e-13 Score=133.27 Aligned_cols=133 Identities=17% Similarity=0.222 Sum_probs=102.1
Q ss_pred hHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCcccccccccccccccC
Q 001250 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQTH 625 (1114)
Q Consensus 546 ~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t~ 625 (1114)
.++.+.++|.+||++|+|+.|.|. ...|.+.|.+++++||+|+||+ |....... .
T Consensus 15 ~~~~~~~~i~~A~~~I~i~~~~~~-------------~~~i~~aL~~a~~rGV~Vril~-~~~~~~~~-----------~ 69 (155)
T 1byr_A 15 ARVLVLSAIDSAKTSIRMMAYSFT-------------APDIMKALVAAKKRGVDVKIVI-DERGNTGR-----------A 69 (155)
T ss_dssp HHHHHHHHHHHCSSEEEEEESSBC-------------CHHHHHHHHHHHHTTCEEEEEE-ESTTCCSH-----------H
T ss_pred HHHHHHHHHHHHhhEEEEEEEEeC-------------CHHHHHHHHHHHHCCCEEEEEE-eCcccccc-----------c
Confidence 589999999999999999987542 1578999999999999999996 44332100 0
Q ss_pred cHHHHHHHhcCCcEEEEccCccCcccccccccccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCCCCCcc
Q 001250 626 DEETRRVFKHSSVKVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNPHHPLF 705 (1114)
Q Consensus 626 d~~~~~~~~h~gV~v~l~P~~~~~~~~~~~~~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~~H~l~ 705 (1114)
.....+.+++.|+++..... ....|.|++|||+ .++++|+.|++..-+
T Consensus 70 ~~~~~~~L~~~gv~v~~~~~----------------~~~~H~K~~iiD~--------~~~~iGS~N~~~~~~-------- 117 (155)
T 1byr_A 70 SIAAMNYIANSGIPLRTDSN----------------FPIQHDKVIIVDN--------VTVETGSFNFTKAAE-------- 117 (155)
T ss_dssp HHHHHHHHHHTTCCEEEECS----------------SSCCCCCEEEETT--------TEEEEESCCBSHHHH--------
T ss_pred cHHHHHHHHHCCCeEEEcCC----------------cccccceEEEECC--------CEEEEECCCCCcccc--------
Confidence 13345567788998876421 1358999999999 799999999976311
Q ss_pred cccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCH--HHHHHHHHHHHHHHHhc
Q 001250 706 RTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGP--AAYDVLTNFEERWRKAS 760 (1114)
Q Consensus 706 ~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGP--AA~Dl~~~F~qRWn~a~ 760 (1114)
..|++..+.|+|+ .|.++...|++.|+.+.
T Consensus 118 -------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~~ 149 (155)
T 1byr_A 118 -------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQGR 149 (155)
T ss_dssp -------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred -------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhCC
Confidence 2357899999993 89999999999998653
No 51
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.43 E-value=4.3e-13 Score=160.46 Aligned_cols=109 Identities=21% Similarity=0.244 Sum_probs=92.0
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecC--CCc
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAH--SAA 423 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~--~~~ 423 (1114)
.|.|+|+|++|++|+. |.++. +||||+|.+.+.+ +||+|+++++||+|||+|.|.+.. ...
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~---------------sDPYV~v~l~~~~-~kTkvik~tlNP~Wne~f~f~~~~~~~~~ 455 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTA---------------TDAYLKVFFGGQE-FRTGVVWNNNNPRWTDKMDFENVLLSTGG 455 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSC---------------CCEEEEEEETTEE-EECCCBCSCSSCBCCCCEEEEEEETTTCC
T ss_pred ccEEEEEEEEccCCCc-ccCCC---------------cCeEEEEEECCEe-eeeeeecCCCCCCCCeEEEEEEecCCCCC
Confidence 3689999999999998 88775 9999999999977 699999999999999999998643 467
Q ss_pred eEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCCCCCCeEEEEEEEec
Q 001250 424 EVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1114)
Q Consensus 424 ~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~p 484 (1114)
.|+|+|||+|.. .|||||++.++|. .|. .+.|++|. .|.|+++++.+-
T Consensus 456 ~L~~~V~D~D~~~~dD~LG~~~~~L~---~g~-~~~~~~l~---------~G~l~~~~~~~c 504 (540)
T 3nsj_A 456 PLRVQVWDADYGWDDDLLGSCDRSPH---SGF-HEVTCELN---------HGRVKFSYHAKC 504 (540)
T ss_dssp CEEEEEEECCSSSCCEEEEEEEECCC---SEE-EEEEEECS---------SSEEEEEEEEEE
T ss_pred EEEEEEEECCCCCCCCEEEEEEEEee---CCc-EEEEEEcC---------CeEEEEEEEEEE
Confidence 899999999996 5799999999987 454 67888862 247888877554
No 52
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.38 E-value=1.2e-12 Score=130.59 Aligned_cols=117 Identities=14% Similarity=0.051 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchh
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 918 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~a 918 (1114)
.++.++++++|++||+.|+|+++||. + .+|..+|.+|++ +|++|+||++......
T Consensus 13 ~~~~~~~~~~i~~A~~~I~i~~~~~~-~-----------------~~i~~aL~~a~~--rGV~Vril~~~~~~~~----- 67 (155)
T 1byr_A 13 GSARVLVLSAIDSAKTSIRMMAYSFT-A-----------------PDIMKALVAAKK--RGVDVKIVIDERGNTG----- 67 (155)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBC-C-----------------HHHHHHHHHHHH--TTCEEEEEEESTTCCS-----
T ss_pred CcHHHHHHHHHHHHhhEEEEEEEEeC-C-----------------HHHHHHHHHHHH--CCCEEEEEEeCccccc-----
Confidence 47899999999999999999998883 2 168899988764 6899999999765320
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCceeee-cCCCccccccCCceEEeccCCCceeCCCCCCCCcCCCCCCCCcceE
Q 001250 919 TQRILFWQHKTMQMMYETIYKALVEVGLEGAFS-PQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIA 997 (1114)
Q Consensus 919 vq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~-P~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEIa 997 (1114)
......++.|+++|++++.. +.. ..|.|++++|+ .++++||+|++.||+. .|.|++
T Consensus 68 -------------~~~~~~~~~L~~~gv~v~~~~~~~-------~~H~K~~iiD~-~~~~iGS~N~~~~~~~--~n~E~~ 124 (155)
T 1byr_A 68 -------------RASIAAMNYIANSGIPLRTDSNFP-------IQHDKVIIVDN-VTVETGSFNFTKAAET--KNSENA 124 (155)
T ss_dssp -------------HHHHHHHHHHHHTTCCEEEECSSS-------CCCCCEEEETT-TEEEEESCCBSHHHHH--TSCEEE
T ss_pred -------------cccHHHHHHHHHCCCeEEEcCCcc-------cccceEEEECC-CEEEEECCCCCccccc--cCcccE
Confidence 12345677788999988753 222 24999999998 7889999999999997 899999
Q ss_pred EEEEcC
Q 001250 998 MGAYQP 1003 (1114)
Q Consensus 998 v~i~dp 1003 (1114)
+.+.++
T Consensus 125 ~~i~~~ 130 (155)
T 1byr_A 125 VVIWNM 130 (155)
T ss_dssp EEEESC
T ss_pred EEEcCc
Confidence 999874
No 53
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.36 E-value=3.1e-12 Score=140.11 Aligned_cols=90 Identities=31% Similarity=0.437 Sum_probs=77.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC--CE--EEEeeeeecCCCCCeeceEEEEEecCC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~--g~--~v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
.|.|.|+|++|++|+.+|.++. +||||+|.+. +. ...||+|++++.||+|||+|.|.+...
T Consensus 149 ~~~l~v~v~~a~~L~~~d~~~~---------------~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 213 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDVGGL---------------SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 213 (284)
T ss_dssp TTEEEEEEEEEESCCCCSTTSC---------------CCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTT
T ss_pred CCceEEEEEEeECCCCcCCCCC---------------cCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHH
Confidence 4679999999999999987765 8999999984 33 346999999999999999999998755
Q ss_pred ---CceEEEEEEEecCC-CCccceEEEEeeeee
Q 001250 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQI 450 (1114)
Q Consensus 422 ---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL 450 (1114)
...|.|+|||+|.. ++++||++.|++..+
T Consensus 214 ~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~ 246 (284)
T 2r83_A 214 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 246 (284)
T ss_dssp TGGGEEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred HhCceEEEEEEEeCCCCCCCcEEEEEEECCCCC
Confidence 35799999999985 589999999999864
No 54
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.35 E-value=4.3e-13 Score=165.25 Aligned_cols=103 Identities=22% Similarity=0.366 Sum_probs=92.0
Q ss_pred ceEEEEEEEEeeCCCC---CCCCCcccccccccccCCCCCCCcEEEEEECC--EEEEeeeeecCCCCCeeceEEEEEecC
Q 001250 346 HGNLDIWIYSAKNLPN---MDMFHKTLGGMFNSQMNTKITSDPYVTIAVAG--AVVGRTFVISNSEDPVWQQHFYVPVAH 420 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~---~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g--~~v~RTrVI~nt~NPvWNE~F~f~va~ 420 (1114)
.|+|+|+|++|++|+. +|..+. +||||+|.+.+ ...+||+|+++++||+|||+|.|.+..
T Consensus 17 ~g~L~V~Vi~A~nL~~~~~~D~~g~---------------sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~ 81 (749)
T 1cjy_A 17 SHKFTVVVLRATKVTKGAFGDMLDT---------------PDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 81 (749)
T ss_dssp CEEEEEEEEEEECCCSCHHHHHHCC---------------CCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECT
T ss_pred ccEEEEEEEEEECCCCccccCCCCC---------------cCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecC
Confidence 4789999999999998 776654 89999999985 234699999999999999999999987
Q ss_pred C-CceEEEEEEEecCCCCccceEEEEeeeeeecCceeeeeeeec
Q 001250 421 S-AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSGGKVEGTYPVL 463 (1114)
Q Consensus 421 ~-~~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG~~id~W~pLl 463 (1114)
. ...|+|+|||+|..++++||++.|+|.+|..|...+.|++|.
T Consensus 82 ~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 82 NQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp TSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred CCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEecC
Confidence 4 578999999999977999999999999999888889999995
No 55
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.33 E-value=9.9e-13 Score=139.34 Aligned_cols=150 Identities=14% Similarity=0.125 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecCCCccccccccccccccc
Q 001250 545 KCWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDDPTSRSILGYKMDGVMQT 624 (1114)
Q Consensus 545 ~~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~~~s~~~lg~k~~gvm~t 624 (1114)
+.++.|+++|++||++|+|+.|.|. ...|.++|++||+|||+||||+ |...+...
T Consensus 58 ~~~~~ii~~I~~A~~sI~i~~Y~~~-------------~~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~----------- 112 (220)
T 4gel_A 58 RNVAKIVEQIDRAVYSIDLAIYTFT-------------SLFLADSIKRALQRGVIIRIIS-DGEMVYSK----------- 112 (220)
T ss_dssp HHHHHHHHHHHTCSSEEEEECSCBC-------------CHHHHHHHHHHHHHTCEEEEEC-CTTTTTST-----------
T ss_pred HHHHHHHHHHHHhhhEEEEEEEEeC-------------CHHHHHHHHHHHHcCCeEEEEE-echhhhhh-----------
Confidence 4689999999999999999988652 2579999999999999999995 76543211
Q ss_pred CcHHHHHHHhcCCcEEEEccCccCccccc--ccc--cccccccccccceEEEcCCCCCCCccEEEEEcccccCCCcCCCC
Q 001250 625 HDEETRRVFKHSSVKVLLCPRIAGKRHSW--AKQ--KEVGTIYTHHQKTVIVDADAGYNRRKIIAFVGGLDLCDGRYDNP 700 (1114)
Q Consensus 625 ~d~~~~~~~~h~gV~v~l~P~~~~~~~~~--~~~--~~~~~~~rHHQKiVVID~~~~~~~r~~VAFvGGiDL~dgRwDt~ 700 (1114)
......+...++.+............+ +.+ ...+.+.+.|.|++|||+ .++++|+.|++..-.
T Consensus 113 --~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~--------~~v~~GS~N~t~~s~--- 179 (220)
T 4gel_A 113 --GSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCY--------SIVISGSVNWTALGL--- 179 (220)
T ss_dssp --TCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCC--------CEEEEESCCBSHHHH---
T ss_pred --HHHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceecccccc--------ceEEecCcccccccc---
Confidence 112233445566555421110000111 000 011235688999999998 799999999765211
Q ss_pred CCCcccccccccCCCCCCCcccCCCCCCCCCCeeEEEEEEeCHHHHHHHHHHHHHHHHhcC
Q 001250 701 HHPLFRTLQTLHKDDYHNPTFTGNTTGCPREPWHDLHSKIDGPAAYDVLTNFEERWRKASK 761 (1114)
Q Consensus 701 ~H~l~~~l~~~~~~Dy~np~~~~~~~~~pr~PWHDvh~rVeGPAA~Dl~~~F~qRWn~a~~ 761 (1114)
...|.|+.+..+|++|.++.+.|.+.|+....
T Consensus 180 -----------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~~ 211 (220)
T 4gel_A 180 -----------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFAK 211 (220)
T ss_dssp -----------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSEE
T ss_pred -----------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhccC
Confidence 24578999999999999999999999997543
No 56
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.27 E-value=8.8e-13 Score=146.08 Aligned_cols=109 Identities=28% Similarity=0.348 Sum_probs=88.8
Q ss_pred ceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC--CE--EEEeeeeecCCCCCeeceEEEEEecCC
Q 001250 346 HGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA--GA--VVGRTFVISNSEDPVWQQHFYVPVAHS 421 (1114)
Q Consensus 346 hGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~--g~--~v~RTrVI~nt~NPvWNE~F~f~va~~ 421 (1114)
.|.|.|+|++|++|+.+|..+. +||||+|.+. +. ...||++++++.||+|||+|.|.+...
T Consensus 151 ~~~l~v~v~~a~~L~~~d~~g~---------------~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 215 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDLTGF---------------SDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 215 (296)
T ss_dssp TTEEEEEEEEEESCCCCSSSSC---------------CCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSG
T ss_pred cceeEEEEEEeecCCccCCCCC---------------CCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHH
Confidence 3689999999999999998765 8999999996 32 345999999999999999999998755
Q ss_pred ---CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCCCCCC
Q 001250 422 ---AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGSGKPC 470 (1114)
Q Consensus 422 ---~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~Gkp~ 470 (1114)
...|.|+|||+|.. .+++||++.|++.++.. ...+.|++++...++++
T Consensus 216 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~~~~~~~ 267 (296)
T 1dqv_A 216 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLANPRKPV 267 (296)
T ss_dssp GGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSSSSSSCS
T ss_pred HccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHhCCCCce
Confidence 35799999999986 58999999999987643 13457777776555544
No 57
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.24 E-value=6.9e-12 Score=131.72 Aligned_cols=132 Identities=11% Similarity=0.079 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchh
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 918 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~a 918 (1114)
.+....++++|++||+.|+|+. |++++. +|+++|.+|. .+||+|+||+-.....
T Consensus 45 ~~~~~~ll~~I~~A~~sI~i~~-y~~~~~-----------------~i~~aL~~aa--~rGV~Vrii~D~~~~~------ 98 (196)
T 4ggj_A 45 ESSLSRLLRALLAARSSLELCL-FAFSSP-----------------QLGRAVQLLH--QRGVRVRVITDCDYMA------ 98 (196)
T ss_dssp CCHHHHHHHHHHTCSSEEEEEE-SCBCCH-----------------HHHHHHHHHH--HTTCEEEEEESSCCC-------
T ss_pred HHHHHHHHHHHHHhheEEEEEE-EEeCCH-----------------HHHHHHHHHH--HcCCcEEEEEeccccc------
Confidence 3566889999999999999997 666553 7999999986 4689999998532110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeec-CCCccccccCCceEEeccCCCceeCCCCCCCCcCCCCCCCCcceE
Q 001250 919 TQRILFWQHKTMQMMYETIYKALVEVGLEGAFSP-QDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPERSMEGTRDTEIA 997 (1114)
Q Consensus 919 vq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P-~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~RSM~G~rDsEIa 997 (1114)
...+.+..|.++||++++.. ..+ .|.|++++|+ .++++||+|++.||+. .|.|..
T Consensus 99 --------------~~~~~~~~l~~~gi~v~~~~~~~~-------~H~K~~viD~-~~~~~GS~N~t~~~~~--~n~E~~ 154 (196)
T 4ggj_A 99 --------------LNGSQIGLLRKAGIQVRHDQDLGY-------MHHKFAIVDK-KVLITGSLNWTTQAIQ--NNRENV 154 (196)
T ss_dssp ----------------CCHHHHHHHTTCEEEECCSSSC-------CCCEEEEETT-TEEEEESCCBCHHHHH--HCCEEE
T ss_pred --------------ccHHHHHHHHhcCCCccccccccc-------ccCcEEEEcc-eEEEecCccCChhhhc--ccceeE
Confidence 11123456889999886432 122 3999999998 7899999999999998 899999
Q ss_pred EEEEcCcchhhcccCCCchhHHHHHHHHHHHH
Q 001250 998 MGAYQPEYTWARMKRHPYGQIYGYRMSLWAEH 1029 (1114)
Q Consensus 998 v~i~dp~~~~a~~~~~~~g~i~~lR~~Lw~EH 1029 (1114)
+.+++++.. .+....-.++|.+.
T Consensus 155 ~~i~~~~~~---------~~~~~~F~~~W~~~ 177 (196)
T 4ggj_A 155 LIMEDTEYV---------RLFLEEFERIWEEF 177 (196)
T ss_dssp EEECCHHHH---------HHHHHHHHHHHHHT
T ss_pred EEEECHHHH---------HHHHHHHHHHHHhC
Confidence 998876422 12333446678653
No 58
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.07 E-value=1.7e-10 Score=141.75 Aligned_cols=107 Identities=24% Similarity=0.407 Sum_probs=90.9
Q ss_pred eeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEEC----CEEEEeeeeecCCCCCeeceEEEEEec
Q 001250 344 LLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVA----GAVVGRTFVISNSEDPVWQQHFYVPVA 419 (1114)
Q Consensus 344 LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~----g~~v~RTrVI~nt~NPvWNE~F~f~va 419 (1114)
+..+.|.|+|.+|++|..+|.++. +||||+|.+. .....||+++++++||+|||+|.|.+.
T Consensus 169 ~~~~~L~V~v~~a~~L~~~d~~g~---------------sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~ 233 (674)
T 3pfq_A 169 IDREVLIVVVRDAKNLVPMDPNGL---------------SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233 (674)
T ss_dssp ECSSEEEEEEEEEESCCCCSTTSS---------------CCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECC
T ss_pred eccceeeeeeecccccCCCCcccc---------------cCcccccccccCccccccccccccccccCCCccceeeeecc
Confidence 346789999999999999998775 8999999992 223359999999999999999999986
Q ss_pred CC--CceEEEEEEEecCC-CCccceEEEEeeeeeecCceeeeeeeeccCC
Q 001250 420 HS--AAEVHFFVKDSDVV-GSELIGTVAIPVEQIYSGGKVEGTYPVLNGS 466 (1114)
Q Consensus 420 ~~--~~~L~f~V~D~D~~-gddfIGqa~IpL~eL~sG~~id~W~pLl~~~ 466 (1114)
.. ...|.|+|||+|.. .+++||++.++++++..+. .++|+.|++..
T Consensus 234 ~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~ 282 (674)
T 3pfq_A 234 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE 282 (674)
T ss_dssp STTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCTT
T ss_pred cCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeecccc
Confidence 44 46799999999985 5899999999999998654 58999998653
No 59
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=98.94 E-value=8.1e-09 Score=100.33 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=85.2
Q ss_pred EEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEEE---ee-eeecCCCCCeeceEEEEEecCCCc
Q 001250 348 NLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVVG---RT-FVISNSEDPVWQQHFYVPVAHSAA 423 (1114)
Q Consensus 348 tL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v~---RT-rVI~nt~NPvWNE~F~f~va~~~~ 423 (1114)
.|+|.+.+++--+-+.. + ...||||.|.++....+ +| ...++|..|+|||+|.-.+. ...
T Consensus 7 flRi~~~~~~~~~~~~~-~--------------~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~-~Gr 70 (126)
T 1yrk_A 7 FLRIAFNSYELGSLQAE-D--------------EANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY-EGR 70 (126)
T ss_dssp EEEEEEEEEECSSCCCS-S--------------SSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC-TTC
T ss_pred cEEeeeccccccccCCc-c--------------ccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee-CCE
Confidence 48999877664222211 1 13899999999987765 77 66677999999999999976 456
Q ss_pred eEEEEEEEecCCCCccceEEEEeeeeee-----cCceeeeeeeeccCCCCCCCCCCeEEEEEEEe
Q 001250 424 EVHFFVKDSDVVGSELIGTVAIPVEQIY-----SGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1114)
Q Consensus 424 ~L~f~V~D~D~~gddfIGqa~IpL~eL~-----sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~ 483 (1114)
.|.|.|++... +|+..++|++++|. .+...+.|++|. +.|+|++.++|.
T Consensus 71 ~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe--------P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 71 VIQIVLMRAAE---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMSVQYF 124 (126)
T ss_dssp EEEEEEEEETT---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEEE
T ss_pred EEEEEEEcCCC---CeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEEe
Confidence 89999997655 99999999999998 456789999994 246899999875
No 60
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=98.92 E-value=6e-10 Score=136.46 Aligned_cols=117 Identities=16% Similarity=0.086 Sum_probs=90.9
Q ss_pred HHHHHHHHhccc-----EEEEEeeeec-cCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCc
Q 001250 843 TAYVKAIRSAQH-----FIYIENQYFI-GSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTG 916 (1114)
Q Consensus 843 ~AYl~aI~~Ak~-----fIYIENQYFi-~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~ 916 (1114)
++++++|++|++ .|+| ++||+ +++ .|+.+|++|++ +|++|.||++...-.. .
T Consensus 350 ~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~d~-----------------~I~~AL~~AA~--rGV~VrVLvd~~a~~~-~- 407 (687)
T 1xdp_A 350 EHVLELLRQASFDPSVLAIKI-NIYRVAKDS-----------------RIIDSMIHAAH--NGKKVTVVVELQARFD-E- 407 (687)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-EESSCCTTC-----------------HHHHHHHHHHH--TTCEEEEEECTTCSST-T-
T ss_pred hhHHHHHHHHhhCCcceEEEE-EeeeecCcH-----------------HHHHHHHHHHh--cCCEEEEEECCCcccc-h-
Confidence 467889999997 9999 89999 443 79999999864 6899999999865210 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCceEEeccCC---Cce---eCCCCCCCCcCCCCC
Q 001250 917 AATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDT---SLS---GNPTAPNTPERSMEG 990 (1114)
Q Consensus 917 ~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~HsK~~ivDd---~~~---~~IGSANiN~RSM~G 990 (1114)
.....+++.|.++|+++++... ++++|+|++++|+ ..+ +.|||+|+|.||+.
T Consensus 408 ---------------~~n~~~~~~L~~aGV~V~~~~~------~~k~H~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~- 465 (687)
T 1xdp_A 408 ---------------EANIHWAKRLTEAGVHVIFSAP------GLKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTAR- 465 (687)
T ss_dssp ---------------TTTTTTTHHHHHHTCEEEECCT------TCEECCEEEEEEEEETTEEEEEEEEESSCSCTTGGG-
T ss_pred ---------------hhHHHHHHHHHHCCCEEEEecC------CccccceEEEEEeccCCeEEEEEEEeCCcCCcchhh-
Confidence 0122456778999999875322 2346999999993 244 89999999999997
Q ss_pred CCCcceEEEEEcCc
Q 001250 991 TRDTEIAMGAYQPE 1004 (1114)
Q Consensus 991 ~rDsEIav~i~dp~ 1004 (1114)
.++|+++.++++.
T Consensus 466 -~n~D~~l~i~~~~ 478 (687)
T 1xdp_A 466 -LYTDYSLLTADAR 478 (687)
T ss_dssp -TEEEEEEEECCHH
T ss_pred -hcceEEEEEeCHH
Confidence 9999999998765
No 61
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=98.91 E-value=8.5e-09 Score=101.42 Aligned_cols=109 Identities=18% Similarity=0.278 Sum_probs=86.8
Q ss_pred EEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEECCEEE---Eee-eeecCCCCCeeceEEEEEecCCCce
Q 001250 349 LDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAVAGAVV---GRT-FVISNSEDPVWQQHFYVPVAHSAAE 424 (1114)
Q Consensus 349 L~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L~g~~v---~RT-rVI~nt~NPvWNE~F~f~va~~~~~ 424 (1114)
|+|.+.+.+--+-+...+ ...||||.|.++.... ++| ...++|..|+|||+|.-.+. ....
T Consensus 12 lRi~l~~~~~~~~~~~~~--------------~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~-~Gr~ 76 (138)
T 2enj_A 12 LRIGLSNFDCGSCQSCQG--------------EAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN-KGRV 76 (138)
T ss_dssp EEEEEEEEECCCCCCSCC--------------CCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC-SSCE
T ss_pred eEEEeeccccCCCCCccc--------------ccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE-CCeE
Confidence 899998777544332111 1389999999998777 888 66777999999999998875 4568
Q ss_pred EEEEEEEecCCCCccceEEEEeeeeee-----cCceeeeeeeeccCCCCCCCCCCeEEEEEEEe
Q 001250 425 VHFFVKDSDVVGSELIGTVAIPVEQIY-----SGGKVEGTYPVLNGSGKPCKPGATLTLSIQYT 483 (1114)
Q Consensus 425 L~f~V~D~D~~gddfIGqa~IpL~eL~-----sG~~id~W~pLl~~~Gkp~k~~g~L~L~l~F~ 483 (1114)
|.|.|++... +|+..++|++++|. .+...+.|++|. +.|+|++.++|.
T Consensus 77 l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe--------P~Gkl~v~i~~~ 129 (138)
T 2enj_A 77 MQIIVKGKNV---DLISETTVELYSLAERCRKNNGKTEIWLELK--------PQGRMLMNARYF 129 (138)
T ss_dssp EEEEEECSSC---SCCEEEEEESHHHHHHHHHTTTCEEEEEECB--------SSCEEEEEEEEC
T ss_pred EEEEEEcCCC---CeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEEE
Confidence 9999996554 99999999999998 456789999994 246899999986
No 62
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=98.83 E-value=3.9e-09 Score=111.64 Aligned_cols=123 Identities=12% Similarity=-0.019 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchh
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 918 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~a 918 (1114)
.+..+..+++|.+||+.|+|+. |++++. +|+.+|.+|++ +||+|+||+-......
T Consensus 57 ~~~~~~ii~~I~~A~~sI~i~~-Y~~~~~-----------------~I~~aL~~Aa~--RGV~VRii~D~~~~~~----- 111 (220)
T 4gel_A 57 LRNVAKIVEQIDRAVYSIDLAI-YTFTSL-----------------FLADSIKRALQ--RGVIIRIISDGEMVYS----- 111 (220)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEC-SCBCCH-----------------HHHHHHHHHHH--HTCEEEEECCTTTTTS-----
T ss_pred HHHHHHHHHHHHHhhhEEEEEE-EEeCCH-----------------HHHHHHHHHHH--cCCeEEEEEechhhhh-----
Confidence 4566778999999999999996 777663 79999999864 6899999985432110
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCceeee-cCCCc--ccc-----------ccCCceEEeccCCCceeCCCCCCCC
Q 001250 919 TQRILFWQHKTMQMMYETIYKALVEVGLEGAFS-PQDYL--NFF-----------CLGNREVIDQTDTSLSGNPTAPNTP 984 (1114)
Q Consensus 919 vq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~-P~~Yl--~f~-----------~L~~HsK~~ivDd~~~~~IGSANiN 984 (1114)
....+..|..+|+...+. +...+ .|+ ..++|.|++++|. .++++||+|++
T Consensus 112 ---------------~~~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~-~~v~~GS~N~t 175 (220)
T 4gel_A 112 ---------------KGSQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCY-SIVISGSVNWT 175 (220)
T ss_dssp ---------------TTCHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCC-CEEEEESCCBS
T ss_pred ---------------hHHHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceecccccc-ceEEecCcccc
Confidence 011234466667665432 11111 011 1246777777776 68899999999
Q ss_pred cCCCCCCCCcceEEEEEcCc
Q 001250 985 ERSMEGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus 985 ~RSM~G~rDsEIav~i~dp~ 1004 (1114)
.||+. .|.|..+++.++.
T Consensus 176 ~~s~~--~N~E~~~vi~~~~ 193 (220)
T 4gel_A 176 ALGLG--GNWENCIITADDK 193 (220)
T ss_dssp HHHHH--TSBEEEEEECCHH
T ss_pred ccccc--cCceEEEEEECHH
Confidence 99998 7999999987764
No 63
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=98.67 E-value=3.8e-08 Score=115.95 Aligned_cols=124 Identities=13% Similarity=0.037 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchh
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 918 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~a 918 (1114)
.++..+++++|++||++|+||+.||.++. ++.+|+.+|.+|+++++||+|+|+++...+....-++
T Consensus 36 ~~~~~~l~~~I~~A~~~I~i~~~~~~~d~--------------~g~~l~~aL~~aa~r~~GV~Vril~D~~~~~r~~~g~ 101 (458)
T 3hsi_A 36 AEFKTQIIELIRNAKKRIYVTALYWQKDE--------------AGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLLGA 101 (458)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCBCSSH--------------HHHHHHHHHHHHHHHSTTCEEEEEEETTGGGSCCC--
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEEEecCc--------------HHHHHHHHHHHHHhcCCCCEEEEEEECcccccccccc
Confidence 36889999999999999999999998763 3468999999998888899999999974321100000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccee---ee-cCCCccccccCCceEEeccCCCceeCCCCCCCCcCCCC
Q 001250 919 TQRILFWQHKTMQMMYETIYKALVEVG--LEGA---FS-PQDYLNFFCLGNREVIDQTDTSLSGNPTAPNTPERSME 989 (1114)
Q Consensus 919 vq~il~wq~~tm~~~~~si~~~L~~aG--v~~~---~~-P~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANiN~RSM~ 989 (1114)
. .+ ....+++.+|+++| |++. |. |..+.. ..-++|.|++++|+ .+.+.| +||+++.+.
T Consensus 102 ~---------~~-~~~~~~~~~L~~~g~nv~v~~~~f~~p~~~~~-~~~r~H~Ki~viD~-~v~~~G-~Ni~d~y~~ 165 (458)
T 3hsi_A 102 E---------KS-ATNADWYCEQRQTYQLPDDPNMFFGVPINTRE-VFGVLHVKGFVFDD-TVLYSG-ASINNVYLH 165 (458)
T ss_dssp -------------CCHHHHHHHHHHHHTCTTCCCCEEEECSSSSG-GGCCEECCEEEETT-EEEEES-CCBSTTTTT
T ss_pred c---------cc-cccHHHHHHHHhhCCCceEeeeecCCcccccc-ccCcceeeEEEECC-CEEEEe-eecCHHHhc
Confidence 0 00 01246777888877 6655 22 432221 22367999999999 677777 999999996
No 64
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=98.39 E-value=1.9e-07 Score=111.04 Aligned_cols=133 Identities=12% Similarity=0.044 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeee-ccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCch
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYF-IGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGA 917 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYF-i~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~ 917 (1114)
.++..+++++|++||++|+|+.-+| ..+ .++.+|+++|++|++++++|+|+|++-..+.+...
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d--------------~~g~~i~~aL~~aa~rGp~V~Vril~D~~g~~~~~-- 128 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPNG--------------AFQDAIVAGLKESAAKGNKLKVRILVGAAPVYHMN-- 128 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCH--------------HHHHHHHHHHHHHHHTTCCEEEEEEEECCC--CCC--
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCCC--------------hHHHHHHHHHHHHHhCCCCcEEEEEEeCccccccc--
Confidence 5799999999999999999997552 222 23458999999987665559999999764322100
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eecC---CCc---cccccCCceEEeccCCCceeCCCCCCC-CcCCCC
Q 001250 918 ATQRILFWQHKTMQMMYETIYKALVEVGLEGA-FSPQ---DYL---NFFCLGNREVIDQTDTSLSGNPTAPNT-PERSME 989 (1114)
Q Consensus 918 avq~il~wq~~tm~~~~~si~~~L~~aGv~~~-~~P~---~Yl---~f~~L~~HsK~~ivDd~~~~~IGSANi-N~RSM~ 989 (1114)
. ....++++|+++|++.. +.|. .+. ..+. ++|.|++++|+ .++++||+|| +++.+.
T Consensus 129 ~--------------~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-r~H~K~~ViD~-~~a~~Gg~Nl~~d~y~~ 192 (506)
T 1v0w_A 129 V--------------IPSKYRDELTAKLGKAAENITLNVASMTTSKTAFS-WNHSKILVVDG-QSALTGGINSWKDDYLD 192 (506)
T ss_dssp C--------------HHHHHHHHHHHHHGGGGGGEEEEEEEECSBTTTTB-CBCCCEEEETT-TEEEEESCCCCHHHHTS
T ss_pred c--------------CCHHHHHHHHhcccceeecCccccccccccCCccc-cceeeEEEECC-cEEEeeccccCcccccc
Confidence 0 12345566777655321 0010 011 0112 78999999998 7999999998 666553
Q ss_pred CC-CCcceEEEEEcC
Q 001250 990 GT-RDTEIAMGAYQP 1003 (1114)
Q Consensus 990 G~-rDsEIav~i~dp 1003 (1114)
.+ .-.++.+.+..+
T Consensus 193 ~~~~~~D~~v~i~G~ 207 (506)
T 1v0w_A 193 TTHPVSDVDLALTGP 207 (506)
T ss_dssp SSSCCBEEEEEEESH
T ss_pred CCCCceEEEEEEECH
Confidence 10 226777777654
No 65
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=97.75 E-value=3.7e-05 Score=94.20 Aligned_cols=119 Identities=8% Similarity=-0.009 Sum_probs=88.1
Q ss_pred HHHHHHHHHhccc-----EEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCc
Q 001250 842 HTAYVKAIRSAQH-----FIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTG 916 (1114)
Q Consensus 842 ~~AYl~aI~~Ak~-----fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~ 916 (1114)
.++++++|++|++ .|.|+ .|.++.. ..|+.+|++|++ .|++|.|++-...-...
T Consensus 354 f~~vi~~I~~A~~DP~V~sIk~t-lYr~~~d----------------s~Iv~ALi~AA~--rGv~V~vLvel~arfde-- 412 (705)
T 2o8r_A 354 YDYVVRLLMEAAISPDVSEIRLT-QYRVAEN----------------SSIISALEAAAQ--SGKKVSVFVELKARFDE-- 412 (705)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEEE-ESCCCSC----------------CHHHHHHHHHHH--TTCEEEEEECCCSCC----
T ss_pred HHHHHHHHHHhccCCCceEEEEE-EEEEcCC----------------HHHHHHHHHHHH--CCCEEEEEEeCCCCcch--
Confidence 4689999999999 99975 5766542 179999999865 57888888875432110
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCceEEeccCCC--c------eeCCCCCCCCcCCC
Q 001250 917 AATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTS--L------SGNPTAPNTPERSM 988 (1114)
Q Consensus 917 ~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~HsK~~ivDd~--~------~~~IGSANiN~RSM 988 (1114)
-....+.++|.++|+++.| .+.++++|+|+++||.. . ++.+|+.|+|+.+.
T Consensus 413 ---------------e~ni~wa~~Le~aGv~Vv~------g~~~lk~H~Ki~lIdrr~~~~g~~~~y~~igtGN~n~~ta 471 (705)
T 2o8r_A 413 ---------------ENNLRLSERMRRSGIRIVY------SMPGLKVHAKTALILYHTPAGERPQGIALLSTGNFNETTA 471 (705)
T ss_dssp -----------------CHHHHHHHHHHTCEEEE------CCTTCCBCCCEEEEEECCCSSSCCCEEEEEESSCSSCCCS
T ss_pred ---------------hhhHHHHHHHHHCCCEEEE------ccCCCCceeEEEEEecccccCCceeEEEeccccceeeeEE
Confidence 0112456789999999864 13467899999999973 1 35679999999999
Q ss_pred CCCCCcceEEEEEcCc
Q 001250 989 EGTRDTEIAMGAYQPE 1004 (1114)
Q Consensus 989 ~G~rDsEIav~i~dp~ 1004 (1114)
. .-+++++...++.
T Consensus 472 r--iy~D~~l~t~~~~ 485 (705)
T 2o8r_A 472 R--IYSDTTLMTANTD 485 (705)
T ss_dssp S--CEEEEEEEECCHH
T ss_pred E--EEeeeeeeecChH
Confidence 7 8899999887765
No 66
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=93.38 E-value=0.0057 Score=69.38 Aligned_cols=108 Identities=12% Similarity=0.017 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCCCchh
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWPEGVPTGAA 918 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~Peg~p~~~a 918 (1114)
..|.+...++|++|++-|||...+..- .++...|.+|+ .+|++|.||+|..|+.. .
T Consensus 118 ~~I~~ri~eli~~A~~eI~i~~~~~~l------------------~~l~~~L~~a~--~RGV~Vrvi~~~~~d~a----~ 173 (342)
T 3qph_A 118 DEAIEMFRESLYSAKNEVIVVTPSEFF------------------ETIREDLIKTL--ERGVTVSLYIDKIPDLS----E 173 (342)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECHHHH------------------HHHHHHHHHHH--HTTCEEEEEESSCCCCG----G
T ss_pred HHHHHHHHHHHHhhheEEEEEeCHHHH------------------HHHHHHHHHHH--hCCCEEEEEECCCCChh----h
Confidence 579999999999999999998643221 24556666654 57899999998765421 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCceEEeccCCCceeCCCCCCC-Cc---CCCCCCCCc
Q 001250 919 TQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNREVIDQTDTSLSGNPTAPNT-PE---RSMEGTRDT 994 (1114)
Q Consensus 919 vq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~HsK~~ivDd~~~~~IGSANi-N~---RSM~G~rDs 994 (1114)
|. + + ..+..++..+ . .-.++++|. ..+++|++|. ++ ||+. .++
T Consensus 174 ------~~-------~------~-~~~~~vR~~~---~-------~p~l~ivD~-~~alv~~~~~~~~~~~rS~~--~~~ 220 (342)
T 3qph_A 174 ------FK-------G------K-GNFFVRQFYK---L-------NHLIGMTDG-KEVVTIQNATFDSIGPPSFK--STY 220 (342)
T ss_dssp ------GS-------S------S-SEEEEEECSC---C-------CSEEEEETT-TEEEEECSSSCCSSCCCEEE--ECC
T ss_pred ------hh-------c------c-ccceEEEEcC---C-------CcEEEEEEC-CEEEEecccccccccccccc--ccc
Confidence 00 0 0 1111222111 1 113477777 7899999998 44 9997 899
Q ss_pred ceEEEEEcCc
Q 001250 995 EIAMGAYQPE 1004 (1114)
Q Consensus 995 EIav~i~dp~ 1004 (1114)
| ++.+.|+.
T Consensus 221 e-aliv~~~~ 229 (342)
T 3qph_A 221 P-EIIFSQYS 229 (342)
T ss_dssp H-HHHHHHHH
T ss_pred c-EEEEECHH
Confidence 9 88877654
No 67
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=91.80 E-value=0.21 Score=53.71 Aligned_cols=49 Identities=18% Similarity=0.055 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEEecC
Q 001250 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLVWDD 607 (1114)
Q Consensus 546 ~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLvwD~ 607 (1114)
..+.+.+.|++|+++|+|..|. + .-.+|.+.|++++++||.|+|+++..
T Consensus 11 Ii~r~~e~I~~A~~el~lsi~~----------e---~l~~l~~~L~~A~~rGV~V~liv~~~ 59 (233)
T 2f5t_X 11 AIEMFRESLYSAKNEVIVVTPS----------E---FFETIREDLIKTLERGVTVSLYIDKI 59 (233)
T ss_dssp HHHHHHHHHHTCSSEEEEEECG----------G---GHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHhhhEEEEEeCH----------H---HHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4788999999999999997761 1 34789999999999999999999765
No 68
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=81.84 E-value=3.4 Score=52.66 Aligned_cols=71 Identities=13% Similarity=0.234 Sum_probs=49.4
Q ss_pred eceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEE--CCEEEE---eeeeecCCCCCeeceEEEEEec
Q 001250 345 LHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYVPVA 419 (1114)
Q Consensus 345 lhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L--~g~~v~---RTrVI~nt~NPvWNE~F~f~va 419 (1114)
+...|.|+|..+.++...+ .++.||++.| +++... .|+.+.-..+|.|||.+.|++.
T Consensus 215 ~~~~f~i~i~~~~~~~~~~------------------~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~ 276 (940)
T 2wxf_A 215 LEQPFSIELIEGRKVNADE------------------RMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDIS 276 (940)
T ss_dssp CCSEEEEEEEEEECCCC---------------------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEE
T ss_pred cCCceEEEEEEecccCCCC------------------CceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccc
Confidence 3456999999999986431 1678988877 454432 4544555778999998777753
Q ss_pred --CC--CceEEEEEEEec
Q 001250 420 --HS--AAEVHFFVKDSD 433 (1114)
Q Consensus 420 --~~--~~~L~f~V~D~D 433 (1114)
+. .+.|.|+|++..
T Consensus 277 i~dLPr~a~L~~ti~~~~ 294 (940)
T 2wxf_A 277 VCDLPRMARLCFALYAVV 294 (940)
T ss_dssp GGGCCTTCEEEEEEEEEC
T ss_pred cccCCcccEEEEEEEEec
Confidence 22 589999999864
No 69
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=76.43 E-value=6.6 Score=39.65 Aligned_cols=98 Identities=14% Similarity=0.107 Sum_probs=69.5
Q ss_pred cEEEEEECCEEEEeeeeecCCCCCeeceEEEEEecCC--------CceEEEEEEEecCCCCccceEEEEeeeeeecC-ce
Q 001250 385 PYVTIAVAGAVVGRTFVISNSEDPVWQQHFYVPVAHS--------AAEVHFFVKDSDVVGSELIGTVAIPVEQIYSG-GK 455 (1114)
Q Consensus 385 PYV~V~L~g~~v~RTrVI~nt~NPvWNE~F~f~va~~--------~~~L~f~V~D~D~~gddfIGqa~IpL~eL~sG-~~ 455 (1114)
.||++.+-.-....|-++. ..+|.+|-+-.+.|... ...|.+++....-..-+.||++.|++.+|... ..
T Consensus 44 tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g~~~~tla~~~I~l~~lLe~~~~ 122 (156)
T 2yrb_A 44 TFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILEKSGR 122 (156)
T ss_dssp EEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECSSCEEEEEEEEECCSHHHHCCSC
T ss_pred EEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeCCCceEEEEEEEEhHHhhCcCCc
Confidence 3666666554444777766 89999998777777543 24688888876444456899999999999843 44
Q ss_pred eeeeeeeccCCCCCCCCCCeEEEEEEEec
Q 001250 456 VEGTYPVLNGSGKPCKPGATLTLSIQYTP 484 (1114)
Q Consensus 456 id~W~pLl~~~Gkp~k~~g~L~L~l~F~p 484 (1114)
+.+..+|.+.+|+.. .-|.|.+.|++..
T Consensus 123 i~g~~~L~g~~g~~~-~~G~LeywiRL~~ 150 (156)
T 2yrb_A 123 IFCTASLIGTKGDIP-NFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEEECBSSSCCT-TSEEEEEEEEEEE
T ss_pred eEEEEEEEcCCCCcc-eEEEEEEEEEEec
Confidence 667889998887421 2368998888763
No 70
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=76.24 E-value=3.1 Score=46.99 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhcccceEEEEEEEecceeEEeCCCCChHHHHHHHHHHHhccCCEEEEEE
Q 001250 546 CWYDICNAISQAQRLIYITGWSVWHKVKLVRDASPALDCTLGELLRSKSQEGVRVLLLV 604 (1114)
Q Consensus 546 ~f~al~~AI~~Ak~~I~I~gW~~~p~i~L~Rdd~~~~g~rL~dLLk~KA~eGVrVrlLv 604 (1114)
....+.+.|.+|+++|++..|. + .-..+.+.|++++++||+|++++
T Consensus 120 I~~ri~eli~~A~~eI~i~~~~----------~---~l~~l~~~L~~a~~RGV~Vrvi~ 165 (342)
T 3qph_A 120 AIEMFRESLYSAKNEVIVVTPS----------E---FFETIREDLIKTLERGVTVSLYI 165 (342)
T ss_dssp HHHHHHHHHHHCSSEEEEEECH----------H---HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHhhheEEEEEeCH----------H---HHHHHHHHHHHHHhCCCEEEEEE
Confidence 4788999999999999998761 1 23567789999999999999997
No 71
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=71.75 E-value=7.5 Score=50.14 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=57.5
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEE--CCEEEE---eeeeecCCCCCeeceEEEE
Q 001250 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFYV 416 (1114)
Q Consensus 342 ~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L--~g~~v~---RTrVI~nt~NPvWNE~F~f 416 (1114)
+|-+...+.|+|..+.++.... .. ..+-||++.| +++... +|+.+. ..+|.|||-++|
T Consensus 350 lw~~~~~f~v~i~~~~~~n~~~-~~---------------~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f 412 (1091)
T 3hhm_A 350 LWVINSALRIKILCATYVNVNI-RD---------------IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNY 412 (1091)
T ss_dssp GGGCCSEEEEEEEEESCCCCCC-SS---------------CCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEE
T ss_pred hhhCCCCEEEEEEEecCCCCCc-cc---------------cceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEe
Confidence 4666778999999999886322 11 2577998887 333321 444333 567889997777
Q ss_pred Ee--cCC--CceEEEEEEEecCC-----CCccceEEEEeee
Q 001250 417 PV--AHS--AAEVHFFVKDSDVV-----GSELIGTVAIPVE 448 (1114)
Q Consensus 417 ~v--a~~--~~~L~f~V~D~D~~-----gddfIGqa~IpL~ 448 (1114)
++ .+. .+.|.|+|++.... ....||.+.++|-
T Consensus 413 ~i~i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~lf 453 (1091)
T 3hhm_A 413 DIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINLF 453 (1091)
T ss_dssp EEEGGGCCTTCEEEEEECCCCCCC-------CCEEEEEESB
T ss_pred cCccccCChhcEEEEEEEEecCccCcccccceeEEeeeeeE
Confidence 65 333 58999999986542 1235666666654
No 72
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=64.55 E-value=11 Score=40.01 Aligned_cols=38 Identities=11% Similarity=0.308 Sum_probs=31.6
Q ss_pred EeeeeecCCCCCeeceEEEEEecCC---CceEEEEEEEecC
Q 001250 397 GRTFVISNSEDPVWQQHFYVPVAHS---AAEVHFFVKDSDV 434 (1114)
Q Consensus 397 ~RTrVI~nt~NPvWNE~F~f~va~~---~~~L~f~V~D~D~ 434 (1114)
.+|-|...+.+|.|+|++.+.+... ...|.|+++....
T Consensus 79 ~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 79 YKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp EECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred EEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 4888888899999999999998644 4789999987554
No 73
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=64.15 E-value=20 Score=45.88 Aligned_cols=77 Identities=10% Similarity=0.048 Sum_probs=49.0
Q ss_pred eeeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEE--CCEEEE--eeeeecCCCCCeeceEEEEE
Q 001250 342 VLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG--RTFVISNSEDPVWQQHFYVP 417 (1114)
Q Consensus 342 ~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L--~g~~v~--RTrVI~nt~NPvWNE~F~f~ 417 (1114)
+|-+...++|+|..+......+ .. .++.||++.| +++... +|.-+.-+.+|.|||-++|+
T Consensus 213 lw~~~~~f~i~i~~~~~~~~~~-~~---------------~~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~ 276 (961)
T 1e7u_A 213 LWDCDRKFRVKIRGIDIPVLPR-TA---------------DLTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFS 276 (961)
T ss_dssp CSCCCSEEEEEEEEEECSSCCT-TS---------------CEEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEE
T ss_pred eeeccCceEEEEeecccccccC-CC---------------CceEEEEEEEEECCEEcccceeeccccCCCcccceeEEec
Confidence 4556667899999886521000 01 2578988766 555443 34434446689999987776
Q ss_pred ec--CC--CceEEEEEEEecC
Q 001250 418 VA--HS--AAEVHFFVKDSDV 434 (1114)
Q Consensus 418 va--~~--~~~L~f~V~D~D~ 434 (1114)
+. +. .+.|.|+|++...
T Consensus 277 i~i~dLPr~a~L~~ti~~~~~ 297 (961)
T 1e7u_A 277 IKIKDLPKGALLNLQIYCGAK 297 (961)
T ss_dssp EEGGGCCTTCEEEEEEEEEEC
T ss_pred cccccCCcccEEEEEEEeccc
Confidence 53 32 5899999998653
No 74
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=58.44 E-value=7 Score=50.57 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=51.0
Q ss_pred ceeeeceEEEEEEEEeeCCCCCCCCCcccccccccccCCCCCCCcEEEEEE--CCEEEE---eeeeecCCCCCeeceEEE
Q 001250 341 KVLLLHGNLDIWIYSAKNLPNMDMFHKTLGGMFNSQMNTKITSDPYVTIAV--AGAVVG---RTFVISNSEDPVWQQHFY 415 (1114)
Q Consensus 341 ~~~LlhGtL~VtI~eAk~L~~~D~~g~~~~~~~~k~~~~~itsDPYV~V~L--~g~~v~---RTrVI~nt~NPvWNE~F~ 415 (1114)
.+|-+...+.|+|..+.++...+ .++.||++.| +++... +|+.+.-..+|.|||-+.
T Consensus 347 s~~~~~~~f~i~i~~~~~~~~~~------------------~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~ 408 (1092)
T 2y3a_A 347 HIWDNNNPFQITLVKGNKLNTEE------------------TVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLE 408 (1092)
T ss_dssp -CCCCCSEEEEEECCCCCCCCCS------------------SCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEE
T ss_pred ehhhcCCCEEEEEEEeccCCCCC------------------CceEEEEEEEEECCEEccCceecccccCCCCCccceeEE
Confidence 45667788999999999886331 1567777555 555442 444444467899999877
Q ss_pred EEec--CC--CceEEEEEEEec
Q 001250 416 VPVA--HS--AAEVHFFVKDSD 433 (1114)
Q Consensus 416 f~va--~~--~~~L~f~V~D~D 433 (1114)
|++. +. .+.|.|+||+..
T Consensus 409 f~i~~~dLPr~a~L~~ti~~~~ 430 (1092)
T 2y3a_A 409 FDINICDLPRMARLCFAVYAVL 430 (1092)
T ss_dssp EEEESSSCCTTCEEEEECCCC-
T ss_pred eCCccccCChhcEEEEEEEEec
Confidence 7654 32 588999998854
No 75
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=40.36 E-value=50 Score=35.80 Aligned_cols=90 Identities=10% Similarity=0.039 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecCCCccccccCCce
Q 001250 886 IALKIADKIRAHERFAAYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEGAFSPQDYLNFFCLGNRE 965 (1114)
Q Consensus 886 Ia~aLa~aira~~gf~V~IVlP~~Peg~p~~~avq~il~wq~~tm~~~~~si~~~L~~aGv~~~~~P~~Yl~f~~L~~Hs 965 (1114)
+...+.+.+. +|.+|++|+-..-+... . .+...++|+..|++.+..-+.-| + |+
T Consensus 53 fy~~f~~h~~--~Ggkv~~IlGgstsQrl--T----------------SKQavEElL~cGvev~IiNrkRi--~----Ha 106 (358)
T 2c1l_A 53 FYETFTEHIN--QGGRVIAILGGSTSQRL--S----------------SRQVVEELLNRGVEVHIINRKRI--L----HA 106 (358)
T ss_dssp THHHHHHHHH--TTCEEEEEEECCSSSCC--B----------------BHHHHHHHHHTTCEEEEEECSSC--B----CC
T ss_pred ecHHHHHHHh--cCCcEEEEEcccccccc--c----------------HHHHHHHHHhcCCceEEeeeeee--c----ch
Confidence 4455555543 46778777765332211 1 23456778899998753211112 2 99
Q ss_pred EEeccCC--CceeCCCCCCCCcCCCCCCCCcceEEEEEcC
Q 001250 966 VIDQTDT--SLSGNPTAPNTPERSMEGTRDTEIAMGAYQP 1003 (1114)
Q Consensus 966 K~~ivDd--~~~~~IGSANiN~RSM~G~rDsEIav~i~dp 1003 (1114)
|+..... ....+|||.|+-.--|. .|-||++.+.+.
T Consensus 107 K~Yg~~~n~g~~LIV~SgNfT~pGms--QNvE~sllld~~ 144 (358)
T 2c1l_A 107 KLYGTSNNLGESLVVSSGNFTGPGMS--QNIEASLLLDNN 144 (358)
T ss_dssp EEEEEEETTEEEEEEESCCBSTTTTT--TSBEEEEEECHH
T ss_pred hhhcccCCCceEEEEecCCccccccc--cceeEEEEEcCC
Confidence 9866421 13458999999999997 999999988654
No 76
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=33.11 E-value=49 Score=35.32 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcccEEEEEeeeeccCCCCccccccCCCCCchHHHHHHHHHHHHHhCCCeEEEEEecCCC
Q 001250 839 MSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWSSYRDLGANNLIPMEIALKIADKIRAHERFAAYIVIPMWP 910 (1114)
Q Consensus 839 ~sI~~AYl~aI~~Ak~fIYIENQYFi~~~~~w~~~~~~~a~N~I~~eIa~aLa~aira~~gf~V~IVlP~~P 910 (1114)
..|.+-..++|++|++-|+|. ++.. .+ .+|...|.+|. ++|+.|+|++...+
T Consensus 9 e~Ii~r~~e~I~~A~~el~ls----i~~e-------------~l-~~l~~~L~~A~--~rGV~V~liv~~~~ 60 (233)
T 2f5t_X 9 DEAIEMFRESLYSAKNEVIVV----TPSE-------------FF-ETIREDLIKTL--ERGVTVSLYIDKIP 60 (233)
T ss_dssp HHHHHHHHHHHHTCSSEEEEE----ECGG-------------GH-HHHHHHHHHHH--HTTCEEEEEESSCC
T ss_pred HHHHHHHHHHHHHhhhEEEEE----eCHH-------------HH-HHHHHHHHHHH--HCCCEEEEEEcCCc
Confidence 578888999999999999993 3332 11 36777777765 57899999987643
Done!