Query 001253
Match_columns 1114
No_of_seqs 1153 out of 7137
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 18:43:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.3E-96 1E-100 928.2 39.0 682 29-723 7-748 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.1E-77 1.1E-81 754.8 28.2 604 83-693 79-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-65 4.6E-70 643.3 38.1 619 84-721 10-656 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 7.4E-64 2.5E-68 627.5 38.4 598 64-678 4-634 (680)
5 3t6q_A CD180 antigen; protein- 100.0 1.4E-59 4.9E-64 580.6 28.2 563 105-720 15-591 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 2E-58 6.8E-63 589.2 34.9 541 105-703 7-571 (844)
7 3t6q_A CD180 antigen; protein- 100.0 5.3E-58 1.8E-62 566.6 34.7 537 86-672 20-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-58 1.4E-62 567.6 27.1 562 128-720 13-589 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 6.4E-57 2.2E-61 556.9 33.0 533 83-646 16-560 (606)
10 4eco_A Uncharacterized protein 100.0 8.6E-58 2.9E-62 563.8 20.9 502 34-571 30-600 (636)
11 4ecn_A Leucine-rich repeat pro 100.0 5.9E-57 2E-61 563.4 20.5 505 30-571 265-864 (876)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-54 3.6E-59 554.7 37.9 533 154-719 8-564 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 2.3E-52 7.7E-57 512.6 25.3 535 153-719 10-560 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 3.9E-51 1.3E-55 501.6 31.0 512 84-648 13-535 (570)
15 4eco_A Uncharacterized protein 100.0 6.4E-51 2.2E-55 502.5 22.4 468 102-619 81-600 (636)
16 3omv_A RAF proto-oncogene seri 100.0 9.7E-51 3.3E-55 446.9 19.4 266 805-1089 32-301 (307)
17 2z81_A CD282 antigen, TOLL-lik 100.0 3.2E-50 1.1E-54 490.9 25.0 492 63-599 3-514 (549)
18 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-50 1.2E-54 490.5 21.7 488 180-702 11-520 (549)
19 4asz_A BDNF/NT-3 growth factor 100.0 1.1E-50 3.7E-55 447.0 15.1 259 808-1089 12-290 (299)
20 4g8a_A TOLL-like receptor 4; l 100.0 4.9E-49 1.7E-53 489.8 29.8 592 48-723 8-614 (635)
21 4aoj_A High affinity nerve gro 100.0 5.6E-50 1.9E-54 447.6 19.1 259 808-1089 40-320 (329)
22 4gt4_A Tyrosine-protein kinase 100.0 5E-50 1.7E-54 443.7 17.6 256 809-1086 26-304 (308)
23 2z7x_B TOLL-like receptor 1, v 100.0 5.9E-50 2E-54 484.8 18.3 476 226-719 4-510 (520)
24 4aw0_A HPDK1, 3-phosphoinositi 100.0 5.7E-50 2E-54 439.0 14.2 269 809-1103 32-302 (311)
25 4fih_A Serine/threonine-protei 100.0 6.4E-49 2.2E-53 437.4 19.4 249 809-1081 74-323 (346)
26 4b9d_A Serine/threonine-protei 100.0 2.4E-49 8.3E-54 441.5 15.6 251 809-1081 24-276 (350)
27 4ase_A Vascular endothelial gr 100.0 4.9E-49 1.7E-53 443.4 16.8 272 799-1091 54-350 (353)
28 4g3f_A NF-kappa-beta-inducing 100.0 1.1E-48 3.8E-53 434.4 18.9 254 809-1089 58-317 (336)
29 4ecn_A Leucine-rich repeat pro 100.0 8.6E-48 2.9E-52 480.8 27.8 483 102-619 323-864 (876)
30 2z7x_B TOLL-like receptor 1, v 100.0 6.6E-48 2.3E-52 466.8 23.9 459 105-623 3-485 (520)
31 3hyh_A Carbon catabolite-derep 100.0 2.9E-48 9.9E-53 420.1 18.1 248 809-1081 13-262 (275)
32 3hmm_A TGF-beta receptor type- 100.0 9.1E-48 3.1E-52 427.2 22.3 270 809-1091 3-300 (303)
33 4fie_A Serine/threonine-protei 100.0 8.3E-48 2.9E-52 439.0 20.5 250 808-1081 150-400 (423)
34 3fpq_A Serine/threonine-protei 100.0 4.6E-48 1.6E-52 422.5 17.5 248 812-1081 29-282 (290)
35 3ubd_A Ribosomal protein S6 ki 100.0 4.3E-48 1.5E-52 424.6 11.3 264 809-1102 24-292 (304)
36 4g8a_A TOLL-like receptor 4; l 100.0 5.1E-46 1.8E-50 462.5 31.3 523 68-620 35-581 (635)
37 4g31_A Eukaryotic translation 100.0 5E-46 1.7E-50 410.7 19.2 249 809-1081 5-279 (299)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-45 5.3E-50 449.8 18.5 459 225-702 34-520 (562)
39 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-44 4.3E-49 441.8 23.8 455 81-575 34-514 (562)
40 4b99_A Mitogen-activated prote 100.0 2.7E-43 9.2E-48 403.9 21.5 266 809-1081 54-344 (398)
41 3v5w_A G-protein coupled recep 100.0 1.9E-43 6.4E-48 420.1 18.3 251 809-1081 189-449 (689)
42 4f9c_A Cell division cycle 7-r 100.0 5.6E-43 1.9E-47 397.2 20.5 198 808-1017 20-251 (361)
43 1jl5_A Outer protein YOPM; leu 100.0 4.5E-43 1.5E-47 413.3 19.7 421 197-697 10-434 (454)
44 1ogq_A PGIP-2, polygalacturona 100.0 5.6E-43 1.9E-47 392.9 17.5 295 30-329 2-302 (313)
45 1jl5_A Outer protein YOPM; leu 100.0 3.4E-42 1.2E-46 405.8 23.1 425 124-653 9-438 (454)
46 3uto_A Twitchin; kinase, muscl 100.0 1.3E-42 4.4E-47 418.5 18.6 251 809-1081 157-410 (573)
47 3uim_A Brassinosteroid insensi 100.0 1.1E-41 3.8E-46 386.0 22.7 290 795-1089 16-312 (326)
48 3v47_A TOLL-like receptor 5B a 100.0 5.1E-42 1.7E-46 408.1 19.0 385 298-701 14-417 (455)
49 3v47_A TOLL-like receptor 5B a 100.0 3.2E-41 1.1E-45 401.1 24.8 364 246-623 30-412 (455)
50 2qkw_B Protein kinase; three-h 100.0 1.5E-40 5.2E-45 375.6 25.0 282 800-1090 30-317 (321)
51 3s95_A LIMK-1, LIM domain kina 100.0 2.5E-40 8.5E-45 372.0 21.1 260 808-1089 9-283 (310)
52 3fxz_A Serine/threonine-protei 100.0 3.1E-40 1.1E-44 368.2 21.5 250 808-1081 19-269 (297)
53 3sxs_A Cytoplasmic tyrosine-pr 100.0 1.4E-40 4.9E-45 365.5 17.9 261 807-1091 6-267 (268)
54 4hcu_A Tyrosine-protein kinase 100.0 1.3E-40 4.3E-45 366.2 16.9 258 808-1089 9-267 (269)
55 2izr_A Casein kinase I isoform 100.0 4.4E-40 1.5E-44 373.3 21.5 276 808-1103 8-296 (330)
56 2nru_A Interleukin-1 receptor- 100.0 3.7E-39 1.3E-43 362.0 28.3 284 797-1088 13-306 (307)
57 1csn_A Casein kinase-1; phosph 100.0 8.9E-40 3E-44 365.3 23.1 276 808-1102 9-297 (298)
58 4eqm_A Protein kinase; transfe 100.0 2.5E-40 8.5E-45 368.5 17.9 266 808-1090 10-277 (294)
59 3p86_A Serine/threonine-protei 100.0 2.2E-40 7.4E-45 371.3 16.7 266 803-1090 31-300 (309)
60 2psq_A Fibroblast growth facto 100.0 8E-40 2.7E-44 376.2 21.6 260 808-1089 80-365 (370)
61 3gen_A Tyrosine-protein kinase 100.0 1.2E-40 4.2E-45 369.3 13.9 261 805-1089 20-281 (283)
62 4aw2_A Serine/threonine-protei 100.0 2.4E-40 8.2E-45 386.1 16.3 265 801-1081 66-338 (437)
63 3zgw_A Maternal embryonic leuc 100.0 1.4E-39 4.9E-44 369.0 21.7 250 808-1081 9-260 (347)
64 3kul_A Ephrin type-A receptor 100.0 6.4E-40 2.2E-44 370.5 18.7 261 808-1090 48-315 (325)
65 3fe3_A MAP/microtubule affinit 100.0 9.2E-40 3.1E-44 368.7 18.8 249 808-1081 14-264 (328)
66 3cbl_A C-FES, proto-oncogene t 100.0 2.4E-40 8.4E-45 382.0 14.4 263 806-1090 111-376 (377)
67 4euu_A Serine/threonine-protei 100.0 7.4E-39 2.5E-43 361.4 25.5 275 808-1089 8-310 (319)
68 2yab_A Death-associated protei 100.0 2.3E-39 7.8E-44 369.7 21.2 254 808-1081 11-272 (361)
69 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-39 4.8E-44 383.8 20.0 359 238-697 34-392 (457)
70 3lb7_A RAF proto-oncogene seri 100.0 3.8E-39 1.3E-43 361.0 22.6 266 806-1090 33-302 (307)
71 4dc2_A Protein kinase C IOTA t 100.0 1.1E-39 3.6E-44 375.6 18.0 251 808-1076 51-307 (396)
72 3q4u_A Activin receptor type-1 100.0 6E-39 2.1E-43 359.1 23.7 261 808-1086 7-300 (301)
73 3soc_A Activin receptor type-2 100.0 1E-39 3.4E-44 368.7 17.2 271 807-1090 22-320 (322)
74 1tki_A Titin; serine kinase, m 100.0 1.2E-39 4E-44 367.3 17.4 251 808-1081 4-257 (321)
75 3niz_A Rhodanese family protei 100.0 4.5E-39 1.5E-43 361.3 21.9 267 808-1081 20-300 (311)
76 1o6l_A RAC-beta serine/threoni 100.0 1.7E-39 5.7E-44 367.4 18.5 250 809-1081 5-260 (337)
77 1qcf_A Haematopoetic cell kina 100.0 6.3E-40 2.2E-44 388.0 15.4 263 803-1090 182-446 (454)
78 2c30_A Serine/threonine-protei 100.0 9.3E-39 3.2E-43 360.3 24.2 261 797-1081 23-294 (321)
79 3v8s_A RHO-associated protein 100.0 1E-39 3.4E-44 377.9 16.5 260 803-1081 63-329 (410)
80 2qol_A Ephrin receptor; recept 100.0 1.2E-39 4.1E-44 374.9 16.9 262 808-1091 44-312 (373)
81 2vd5_A DMPK protein; serine/th 100.0 1E-39 3.6E-44 378.1 16.5 264 801-1081 53-327 (412)
82 4hgt_A Casein kinase I isoform 100.0 4.8E-39 1.6E-43 359.0 20.8 275 807-1102 7-294 (296)
83 4fr4_A YANK1, serine/threonine 100.0 5E-39 1.7E-43 368.7 21.3 252 809-1081 15-271 (384)
84 3uzp_A CKI-delta, CKID, casein 100.0 8.2E-39 2.8E-43 357.1 22.4 274 808-1102 8-294 (296)
85 3op5_A Serine/threonine-protei 100.0 1.6E-39 5.6E-44 373.7 17.1 288 807-1105 33-346 (364)
86 3vhe_A Vascular endothelial gr 100.0 1.4E-39 4.8E-44 374.1 16.4 271 798-1089 11-356 (359)
87 3tt0_A Basic fibroblast growth 100.0 3.4E-39 1.2E-43 373.3 19.6 271 806-1098 66-362 (382)
88 3h4j_B AMPK kdaid, SNF1-like p 100.0 2.1E-39 7.2E-44 366.2 17.0 248 809-1081 9-258 (336)
89 3bz5_A Internalin-J, INLJ; leu 100.0 5.3E-39 1.8E-43 378.9 21.1 352 271-694 19-370 (457)
90 3t9t_A Tyrosine-protein kinase 100.0 2E-39 6.7E-44 356.3 16.1 258 808-1089 7-265 (267)
91 3o0g_A Cell division protein k 100.0 1.5E-38 5.1E-43 354.1 23.3 267 809-1081 2-282 (292)
92 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 1.5E-39 5E-44 384.4 15.7 264 803-1091 178-443 (452)
93 1mp8_A Focal adhesion kinase 1 100.0 1.9E-39 6.5E-44 359.2 15.4 261 806-1089 12-277 (281)
94 1ob3_A PFPK5, cell division co 100.0 4.5E-39 1.5E-43 357.5 18.4 266 809-1081 2-280 (288)
95 3ugc_A Tyrosine-protein kinase 100.0 3.4E-39 1.2E-43 359.9 17.3 264 808-1089 9-292 (295)
96 2y0a_A Death-associated protei 100.0 9.1E-39 3.1E-43 361.2 20.4 253 809-1081 11-271 (326)
97 1k9a_A Carboxyl-terminal SRC k 100.0 1.1E-38 3.8E-43 376.7 21.8 255 806-1090 190-447 (450)
98 3txo_A PKC-L, NPKC-ETA, protei 100.0 1.3E-39 4.3E-44 371.0 13.1 252 807-1081 21-280 (353)
99 3p1a_A MYT1 kinase, membrane-a 100.0 1.1E-38 3.8E-43 358.2 20.7 247 808-1081 56-304 (311)
100 1rjb_A FL cytokine receptor; k 100.0 5.2E-39 1.8E-43 367.0 17.9 265 804-1089 40-335 (344)
101 3l9p_A Anaplastic lymphoma kin 100.0 1.6E-39 5.6E-44 373.4 13.8 260 808-1089 70-346 (367)
102 3a8x_A Protein kinase C IOTA t 100.0 1E-38 3.5E-43 362.8 20.2 250 809-1076 9-264 (345)
103 4f0f_A Serine/threonine-protei 100.0 2.4E-38 8.1E-43 351.6 22.5 256 808-1086 18-287 (287)
104 1fot_A TPK1 delta, CAMP-depend 100.0 6.9E-39 2.4E-43 359.8 18.2 247 809-1081 6-258 (318)
105 2bdw_A Hypothetical protein K1 100.0 8.9E-39 3.1E-43 366.1 19.3 253 808-1081 28-284 (362)
106 3tki_A Serine/threonine-protei 100.0 7.1E-39 2.4E-43 361.4 18.1 253 809-1082 7-262 (323)
107 2id5_A Lingo-1, leucine rich r 100.0 5.1E-39 1.7E-43 384.4 17.7 349 345-721 14-362 (477)
108 3soa_A Calcium/calmodulin-depe 100.0 9.9E-39 3.4E-43 374.0 19.5 254 808-1081 10-267 (444)
109 3og7_A AKAP9-BRAF fusion prote 100.0 1.2E-38 4.2E-43 354.2 19.3 264 806-1088 21-288 (289)
110 1opk_A P150, C-ABL, proto-onco 100.0 6.3E-39 2.2E-43 382.9 17.9 259 806-1088 217-478 (495)
111 2i1m_A Macrophage colony-stimu 100.0 5.4E-39 1.9E-43 365.0 16.4 266 803-1089 40-327 (333)
112 1xjd_A Protein kinase C, theta 100.0 1.6E-39 5.6E-44 368.5 12.0 252 806-1080 14-268 (345)
113 4eut_A Serine/threonine-protei 100.0 2.6E-38 9.1E-43 367.5 22.4 276 808-1090 8-311 (396)
114 1kob_A Twitchin; kinase, intra 100.0 1.4E-38 4.8E-43 366.5 19.8 251 809-1081 51-304 (387)
115 1qpc_A LCK kinase; alpha beta 100.0 5.4E-39 1.9E-43 355.2 15.6 261 804-1089 8-270 (279)
116 1luf_A Muscle-specific tyrosin 100.0 4.4E-39 1.5E-43 367.5 15.4 264 805-1090 43-337 (343)
117 1t46_A HOMO sapiens V-KIT hard 100.0 9.7E-39 3.3E-43 359.6 17.9 264 805-1089 19-308 (313)
118 1p4o_A Insulin-like growth fac 100.0 3E-39 1E-43 365.3 13.8 270 799-1090 15-301 (322)
119 2i0e_A Protein kinase C-beta I 100.0 4.6E-39 1.6E-43 366.0 15.2 252 807-1081 18-276 (353)
120 3dtc_A Mitogen-activated prote 100.0 8.5E-39 2.9E-43 352.1 16.6 257 808-1086 6-271 (271)
121 3uc3_A Serine/threonine-protei 100.0 1.8E-38 6E-43 363.7 19.7 252 808-1081 19-274 (361)
122 2jii_A Serine/threonine-protei 100.0 5.9E-39 2E-43 367.4 15.6 275 808-1102 41-350 (352)
123 2h34_A Serine/threonine-protei 100.0 6.6E-38 2.2E-42 351.7 23.8 264 809-1091 34-299 (309)
124 3c0i_A Peripheral plasma membr 100.0 5.2E-39 1.8E-43 367.0 15.1 255 808-1081 23-286 (351)
125 2r5t_A Serine/threonine-protei 100.0 4E-39 1.4E-43 369.1 14.1 253 808-1083 37-291 (373)
126 2ivs_A Proto-oncogene tyrosine 100.0 1.1E-38 3.6E-43 359.5 17.3 262 806-1089 20-312 (314)
127 3kfa_A Tyrosine-protein kinase 100.0 3.8E-39 1.3E-43 358.3 13.2 262 804-1089 8-272 (288)
128 3poz_A Epidermal growth factor 100.0 9.6E-39 3.3E-43 361.5 16.8 258 808-1088 14-278 (327)
129 2w4o_A Calcium/calmodulin-depe 100.0 2E-38 6.7E-43 361.7 19.4 250 808-1081 52-305 (349)
130 3cok_A Serine/threonine-protei 100.0 2.2E-38 7.6E-43 350.1 19.1 251 809-1081 11-262 (278)
131 1rdq_E PKA C-alpha, CAMP-depen 100.0 1.2E-38 4.2E-43 362.6 17.3 247 809-1081 41-293 (350)
132 3qup_A Tyrosine-protein kinase 100.0 6.6E-39 2.3E-43 362.6 15.0 268 803-1091 17-301 (323)
133 2pmi_A Negative RE, cyclin-dep 100.0 2.5E-38 8.5E-43 356.4 19.3 266 808-1081 4-293 (317)
134 3kmu_A ILK, integrin-linked ki 100.0 2.2E-38 7.4E-43 348.7 18.4 253 809-1088 10-270 (271)
135 2pvf_A Fibroblast growth facto 100.0 2.7E-38 9.1E-43 359.3 19.5 265 807-1093 33-323 (334)
136 3mdy_A Bone morphogenetic prot 100.0 2.3E-37 7.7E-42 352.4 26.9 272 804-1090 32-333 (337)
137 3ork_A Serine/threonine protei 100.0 5E-38 1.7E-42 353.1 21.1 264 808-1089 11-282 (311)
138 2wqm_A Serine/threonine-protei 100.0 7.8E-38 2.7E-42 351.6 22.4 264 808-1089 31-298 (310)
139 3sv0_A Casein kinase I-like; t 100.0 5E-38 1.7E-42 371.0 21.7 280 808-1106 6-296 (483)
140 2acx_A G protein-coupled recep 100.0 3.7E-38 1.2E-42 375.6 20.4 255 808-1081 183-444 (576)
141 4e5w_A Tyrosine-protein kinase 100.0 4.8E-38 1.6E-42 352.0 19.8 263 808-1087 20-301 (302)
142 1u59_A Tyrosine-protein kinase 100.0 7E-38 2.4E-42 347.8 20.8 259 808-1089 8-273 (287)
143 2y94_A 5'-AMP-activated protei 100.0 3.2E-38 1.1E-42 372.0 19.0 249 809-1081 16-266 (476)
144 2xir_A Vascular endothelial gr 100.0 1.7E-38 5.8E-43 358.2 16.0 272 799-1091 17-313 (316)
145 3pls_A Macrophage-stimulating 100.0 8.8E-38 3E-42 349.1 21.6 264 810-1094 22-293 (298)
146 2eue_A Carbon catabolite derep 100.0 1.1E-37 3.8E-42 343.9 22.0 248 809-1081 13-262 (275)
147 2x4f_A Myosin light chain kina 100.0 2.3E-38 7.8E-43 364.0 17.1 253 812-1086 92-349 (373)
148 2zv2_A Calcium/calmodulin-depe 100.0 1.2E-37 4.2E-42 347.8 22.5 252 808-1081 12-292 (298)
149 3qd2_B Eukaryotic translation 100.0 6.3E-38 2.1E-42 356.2 20.3 249 809-1081 6-325 (332)
150 2eva_A TAK1 kinase - TAB1 chim 100.0 4.9E-38 1.7E-42 352.3 19.0 255 809-1090 8-265 (307)
151 3gni_B Strad alpha; kinase fol 100.0 9.6E-38 3.3E-42 362.6 22.1 276 808-1087 24-341 (389)
152 3cc6_A Protein tyrosine kinase 100.0 3.9E-38 1.3E-42 348.7 17.7 260 807-1089 10-274 (281)
153 1u5q_A Serine/threonine protei 100.0 2.8E-38 9.7E-43 359.8 16.9 249 809-1082 54-306 (348)
154 4fvq_A Tyrosine-protein kinase 100.0 2.2E-38 7.6E-43 352.3 15.7 257 808-1093 7-280 (289)
155 1b6c_B TGF-B superfamily recep 100.0 2.7E-37 9.4E-42 352.5 25.1 275 799-1091 32-339 (342)
156 3c1x_A Hepatocyte growth facto 100.0 6.4E-38 2.2E-42 360.0 19.8 262 809-1092 89-359 (373)
157 3c4z_A Rhodopsin kinase; Ser/T 100.0 8.7E-38 3E-42 372.0 21.5 251 808-1076 184-438 (543)
158 2h8h_A Proto-oncogene tyrosine 100.0 8.2E-39 2.8E-43 385.5 12.5 264 802-1090 260-525 (535)
159 3lzb_A Epidermal growth factor 100.0 3.3E-38 1.1E-42 356.8 16.6 259 808-1089 14-279 (327)
160 3gxj_A TGF-beta receptor type- 100.0 2.4E-39 8.3E-44 362.7 7.2 266 808-1091 2-300 (303)
161 3f66_A Hepatocyte growth facto 100.0 1.4E-37 4.8E-42 347.5 21.4 260 809-1090 25-293 (298)
162 3ttj_A Mitogen-activated prote 100.0 7.4E-38 2.5E-42 369.9 20.0 264 808-1081 61-355 (464)
163 2a2a_A Death-associated protei 100.0 8.6E-38 2.9E-42 353.0 19.6 254 808-1081 11-272 (321)
164 1o6v_A Internalin A; bacterial 100.0 4.5E-37 1.5E-41 365.7 26.8 347 195-596 43-389 (466)
165 1o6v_A Internalin A; bacterial 100.0 5.9E-37 2E-41 364.6 27.8 346 124-524 44-389 (466)
166 2ozo_A Tyrosine-protein kinase 100.0 4E-38 1.4E-42 384.7 18.0 267 808-1097 334-607 (613)
167 3lxl_A Tyrosine-protein kinase 100.0 4.3E-38 1.5E-42 356.5 17.0 272 808-1097 22-312 (327)
168 2v62_A Serine/threonine-protei 100.0 3.1E-38 1.1E-42 360.2 15.9 275 808-1094 36-334 (345)
169 1mqb_A Ephrin type-A receptor 100.0 7.3E-38 2.5E-42 355.1 18.8 263 808-1092 43-313 (333)
170 3kk8_A Calcium/calmodulin depe 100.0 1.3E-37 4.5E-42 345.1 20.2 253 808-1081 5-261 (284)
171 3kex_A Receptor tyrosine-prote 100.0 2.5E-38 8.5E-43 357.9 14.6 257 809-1088 13-276 (325)
172 3dls_A PAS domain-containing s 100.0 6.2E-38 2.1E-42 355.4 17.8 245 808-1082 23-275 (335)
173 3fdn_A Serine/threonine-protei 100.0 4.1E-38 1.4E-42 348.1 15.9 250 808-1082 8-258 (279)
174 4agu_A Cyclin-dependent kinase 100.0 1E-37 3.4E-42 351.0 19.0 266 809-1081 3-284 (311)
175 3a62_A Ribosomal protein S6 ki 100.0 6.8E-38 2.3E-42 354.2 17.7 251 808-1081 16-276 (327)
176 3g33_A Cell division protein k 100.0 8.8E-38 3E-42 350.8 18.5 269 806-1081 6-296 (308)
177 3kn6_A Ribosomal protein S6 ki 100.0 3.3E-38 1.1E-42 356.3 15.0 247 814-1081 16-270 (325)
178 4ejn_A RAC-alpha serine/threon 100.0 2.4E-38 8.3E-43 374.0 14.1 251 808-1081 147-404 (446)
179 3llt_A Serine/threonine kinase 100.0 1.2E-37 3.9E-42 358.2 18.9 207 799-1017 25-263 (360)
180 2qr7_A Ribosomal protein S6 ki 100.0 1.2E-37 4.1E-42 353.5 18.8 251 808-1081 21-277 (342)
181 3f3z_A Calcium/calmodulin-depe 100.0 1.4E-37 4.7E-42 343.5 18.7 250 808-1081 8-261 (277)
182 3lxp_A Non-receptor tyrosine-p 100.0 2.6E-37 8.9E-42 348.4 21.3 262 810-1090 32-312 (318)
183 1nxk_A MAP kinase-activated pr 100.0 1.9E-37 6.5E-42 359.9 20.7 251 809-1082 61-322 (400)
184 3hko_A Calcium/calmodulin-depe 100.0 1.1E-37 3.7E-42 356.2 18.1 260 805-1081 22-330 (345)
185 3g2f_A Bone morphogenetic prot 100.0 1.2E-37 4.2E-42 354.4 18.3 272 808-1093 12-323 (336)
186 3bhy_A Death-associated protei 100.0 1.8E-37 6.2E-42 343.8 19.1 263 808-1090 4-276 (283)
187 3i6u_A CDS1, serine/threonine- 100.0 2.7E-37 9.1E-42 361.2 21.3 255 807-1081 133-399 (419)
188 3is5_A Calcium-dependent prote 100.0 6.3E-37 2.2E-41 339.5 22.9 250 809-1081 22-278 (285)
189 3gbz_A Kinase, CMGC CDK; ssgci 100.0 9.6E-38 3.3E-42 353.6 16.4 278 806-1101 31-328 (329)
190 1fvr_A Tyrosine-protein kinase 100.0 1.5E-37 5E-42 352.2 17.9 264 809-1096 25-308 (327)
191 1vzo_A Ribosomal protein S6 ki 100.0 8E-38 2.7E-42 357.8 15.5 256 809-1082 54-322 (355)
192 1u46_A ACK-1, activated CDC42 100.0 4.3E-38 1.5E-42 350.3 12.9 266 808-1093 17-289 (291)
193 2rku_A Serine/threonine-protei 100.0 1.8E-37 6.1E-42 345.8 17.7 251 808-1081 14-265 (294)
194 3lm5_A Serine/threonine-protei 100.0 3.2E-37 1.1E-41 349.1 19.7 264 798-1081 17-287 (327)
195 3brb_A Proto-oncogene tyrosine 100.0 1.1E-37 3.9E-42 350.8 16.0 267 802-1089 27-309 (313)
196 2yex_A Serine/threonine-protei 100.0 4.1E-37 1.4E-41 339.6 20.1 253 808-1081 6-261 (276)
197 1byg_A CSK, protein (C-termina 100.0 7.7E-38 2.6E-42 345.8 14.1 253 808-1090 20-275 (278)
198 3byv_A Rhoptry kinase; malaria 100.0 2.9E-38 1E-42 365.0 11.2 248 808-1086 72-366 (377)
199 1xbb_A Tyrosine-protein kinase 100.0 9.5E-38 3.2E-42 347.5 14.7 260 807-1089 14-280 (291)
200 2owb_A Serine/threonine-protei 100.0 2.1E-37 7.2E-42 351.8 17.8 251 808-1081 40-291 (335)
201 2buj_A Serine/threonine-protei 100.0 2.2E-37 7.4E-42 349.3 17.6 264 807-1092 27-310 (317)
202 3mtl_A Cell division protein k 100.0 1.3E-37 4.5E-42 351.7 15.7 268 809-1086 2-288 (324)
203 3nyv_A Calmodulin-domain prote 100.0 1.5E-37 5.2E-42 371.7 17.0 253 808-1081 25-281 (484)
204 3oz6_A Mitogen-activated prote 100.0 3E-37 1E-41 358.1 18.8 268 807-1082 7-329 (388)
205 2w1i_A JAK2; chromosomal rearr 100.0 3.7E-37 1.3E-41 348.6 18.9 264 808-1089 40-323 (326)
206 1cm8_A Phosphorylated MAP kina 100.0 2.7E-37 9.3E-42 354.7 18.0 265 808-1087 24-315 (367)
207 1ua2_A CAK, cell division prot 100.0 2.5E-37 8.6E-42 352.8 17.6 268 807-1082 8-292 (346)
208 3e7e_A HBUB1, BUB1A, mitotic c 100.0 5.5E-37 1.9E-41 352.9 20.6 253 806-1089 62-340 (365)
209 2vgo_A Serine/threonine-protei 100.0 2E-37 6.9E-42 343.5 16.3 253 809-1086 14-269 (284)
210 3dbq_A Dual specificity protei 100.0 4.6E-37 1.6E-41 350.2 19.4 253 808-1082 8-274 (343)
211 2zmd_A Dual specificity protei 100.0 2.6E-37 9E-42 357.7 17.2 253 808-1082 55-321 (390)
212 3a7i_A MST3 kinase, serine/thr 100.0 7E-37 2.4E-41 342.7 20.2 250 808-1082 21-271 (303)
213 4aaa_A Cyclin-dependent kinase 100.0 3.6E-37 1.2E-41 349.4 18.0 267 809-1081 25-306 (331)
214 3nsz_A CK II alpha, casein kin 100.0 6.4E-37 2.2E-41 347.5 20.0 259 808-1081 35-319 (330)
215 2ac3_A MAP kinase-interacting 100.0 2.5E-37 8.5E-42 348.6 16.5 257 809-1081 12-295 (316)
216 2id5_A Lingo-1, leucine rich r 100.0 4.6E-37 1.6E-41 367.4 19.4 322 321-646 14-335 (477)
217 3q60_A ROP5B; pseudokinase, tr 100.0 2.8E-37 9.4E-42 356.1 16.6 255 809-1081 62-352 (371)
218 3pfq_A PKC-B, PKC-beta, protei 100.0 2E-37 6.8E-42 382.0 16.4 247 807-1076 339-587 (674)
219 2yfx_A Tyrosine-protein kinase 100.0 2E-37 6.9E-42 351.0 15.2 260 808-1089 29-305 (327)
220 3com_A Serine/threonine-protei 100.0 7.9E-37 2.7E-41 344.2 19.9 251 807-1081 27-278 (314)
221 2y7j_A Phosphorylase B kinase 100.0 4.7E-37 1.6E-41 352.7 18.2 257 805-1081 90-359 (365)
222 3mi9_A Cell division protein k 100.0 8.1E-37 2.8E-41 349.7 20.1 267 809-1081 17-311 (351)
223 2ycf_A Serine/threonine-protei 100.0 7.7E-37 2.6E-41 345.4 19.5 254 808-1081 9-274 (322)
224 2y4i_B KSR2, HKSR2, kinase sup 100.0 3.1E-37 1.1E-41 348.3 15.5 279 801-1102 25-316 (319)
225 2r3i_A Cell division protein k 100.0 8.9E-37 3E-41 341.2 19.0 264 809-1081 3-283 (299)
226 3lij_A Calcium/calmodulin depe 100.0 6.1E-37 2.1E-41 366.8 18.8 251 809-1081 37-291 (494)
227 2h6d_A 5'-AMP-activated protei 100.0 1.4E-36 4.8E-41 335.2 20.2 250 808-1081 10-261 (276)
228 3q5i_A Protein kinase; CDPK, m 100.0 6.5E-37 2.2E-41 367.5 19.0 253 808-1081 35-301 (504)
229 3mwu_A Calmodulin-domain prote 100.0 5.2E-37 1.8E-41 366.8 17.7 252 808-1081 21-276 (486)
230 2xrw_A Mitogen-activated prote 100.0 8.6E-37 3E-41 351.7 18.8 259 809-1081 25-318 (371)
231 2jam_A Calcium/calmodulin-depe 100.0 5.3E-37 1.8E-41 343.7 16.6 250 808-1081 8-261 (304)
232 1t4h_A Serine/threonine-protei 100.0 7.3E-37 2.5E-41 340.2 17.5 249 809-1081 26-282 (290)
233 3pg1_A Mitogen-activated prote 100.0 3.6E-37 1.2E-41 354.3 15.4 274 801-1081 14-316 (362)
234 3ll6_A Cyclin G-associated kin 100.0 2.8E-37 9.6E-42 351.6 14.0 264 806-1096 25-316 (337)
235 2a19_B Interferon-induced, dou 100.0 5E-37 1.7E-41 340.4 15.6 250 807-1090 9-276 (284)
236 3rp9_A Mitogen-activated prote 100.0 1.3E-36 4.5E-41 360.9 20.1 195 809-1009 53-280 (458)
237 2clq_A Mitogen-activated prote 100.0 2.2E-36 7.7E-41 337.2 20.3 251 809-1081 22-278 (295)
238 2w5a_A Serine/threonine-protei 100.0 2.1E-37 7E-42 342.6 11.8 255 809-1085 6-271 (279)
239 3eb0_A Putative uncharacterize 100.0 1.2E-36 4.1E-41 352.2 18.1 262 805-1081 3-321 (383)
240 3n9x_A Phosphotransferase; mal 100.0 3E-36 1E-40 354.0 21.7 200 808-1013 25-252 (432)
241 4fl3_A Tyrosine-protein kinase 100.0 7.1E-37 2.4E-41 374.4 16.9 250 815-1087 375-630 (635)
242 3eqc_A Dual specificity mitoge 100.0 1.6E-36 5.6E-41 348.5 18.8 201 808-1016 32-233 (360)
243 2j7t_A Serine/threonine-protei 100.0 3.2E-37 1.1E-41 345.2 12.5 252 808-1081 18-275 (302)
244 2pml_X PFPK7, Ser/Thr protein 100.0 8.5E-37 2.9E-41 349.3 16.0 263 808-1081 30-322 (348)
245 3kvw_A DYRK2, dual specificity 100.0 2.2E-36 7.7E-41 354.3 19.3 198 808-1017 96-303 (429)
246 2j0j_A Focal adhesion kinase 1 100.0 6.7E-37 2.3E-41 376.1 15.5 260 806-1088 387-651 (656)
247 1x8b_A WEE1HU, WEE1-like prote 100.0 1.7E-36 5.7E-41 337.0 16.8 245 808-1081 10-279 (289)
248 2vwi_A Serine/threonine-protei 100.0 2.7E-37 9.3E-42 346.1 10.5 262 805-1081 11-287 (303)
249 2x7f_A TRAF2 and NCK-interacti 100.0 7.9E-37 2.7E-41 346.1 14.3 253 805-1081 20-286 (326)
250 1phk_A Phosphorylase kinase; g 100.0 2.2E-36 7.6E-41 337.7 17.7 254 808-1081 16-283 (298)
251 3fme_A Dual specificity mitoge 100.0 3.4E-36 1.2E-40 334.8 19.1 259 807-1086 5-273 (290)
252 2fst_X Mitogen-activated prote 100.0 1.4E-36 4.9E-41 348.2 16.3 262 808-1081 28-311 (367)
253 4e7w_A Glycogen synthase kinas 100.0 2.5E-36 8.6E-41 350.2 16.8 260 809-1081 40-321 (394)
254 1zy4_A Serine/threonine-protei 100.0 3.3E-36 1.1E-40 337.2 17.2 251 808-1081 5-283 (303)
255 1j1b_A Glycogen synthase kinas 100.0 4.4E-36 1.5E-40 351.0 18.8 264 809-1086 54-343 (420)
256 1wak_A Serine/threonine-protei 100.0 1.7E-35 5.8E-40 345.2 23.6 263 808-1081 36-391 (397)
257 3qyz_A Mitogen-activated prote 100.0 1E-35 3.5E-40 342.1 20.7 265 808-1081 26-313 (364)
258 3an0_A Dual specificity mitoge 100.0 7.3E-36 2.5E-40 340.2 19.2 259 806-1086 48-317 (340)
259 3oja_B Anopheles plasmodium-re 100.0 5.3E-36 1.8E-40 367.4 18.9 335 342-720 51-385 (597)
260 4exu_A Mitogen-activated prote 100.0 4.2E-36 1.4E-40 346.0 16.7 258 808-1081 41-323 (371)
261 2wtk_C Serine/threonine-protei 100.0 4.3E-35 1.5E-39 328.5 24.2 257 808-1086 4-270 (305)
262 3rgf_A Cyclin-dependent kinase 100.0 7.3E-36 2.5E-40 348.4 18.2 264 809-1081 20-333 (405)
263 2wei_A Calmodulin-domain prote 100.0 5.9E-36 2E-40 332.2 16.6 253 807-1081 20-276 (287)
264 3fhr_A MAP kinase-activated pr 100.0 1.2E-35 4E-40 337.2 19.3 254 809-1085 28-293 (336)
265 2vx3_A Dual specificity tyrosi 100.0 1.4E-35 4.8E-40 343.2 20.3 201 807-1017 52-262 (382)
266 1blx_A Cyclin-dependent kinase 100.0 8.7E-36 3E-40 337.6 17.8 267 807-1081 9-296 (326)
267 3e3p_A Protein kinase, putativ 100.0 6.6E-36 2.2E-40 343.6 17.0 268 803-1081 17-314 (360)
268 3o6n_A APL1; leucine-rich repe 100.0 1.2E-35 4.1E-40 345.2 19.3 335 366-720 45-379 (390)
269 1z57_A Dual specificity protei 100.0 1.1E-35 3.7E-40 338.8 18.6 261 808-1081 13-328 (339)
270 2b9h_A MAP kinase FUS3, mitoge 100.0 1E-35 3.4E-40 341.1 17.6 265 808-1081 10-305 (353)
271 3cek_A Dual specificity protei 100.0 2.9E-36 1E-40 339.2 11.9 263 797-1081 16-292 (313)
272 1ogq_A PGIP-2, polygalacturona 100.0 3.6E-36 1.2E-40 337.5 12.4 258 439-723 51-312 (313)
273 3o6n_A APL1; leucine-rich repe 100.0 2.6E-35 9E-40 342.3 19.9 352 52-452 2-353 (390)
274 3coi_A Mitogen-activated prote 100.0 1.7E-35 5.7E-40 339.0 17.4 257 809-1081 24-305 (353)
275 3aln_A Dual specificity mitoge 100.0 2.5E-35 8.7E-40 333.8 17.5 255 808-1081 21-285 (327)
276 2i6l_A Mitogen-activated prote 100.0 5.6E-35 1.9E-39 330.0 20.1 261 808-1081 10-305 (320)
277 2eu9_A Dual specificity protei 100.0 3.5E-35 1.2E-39 336.9 17.7 261 808-1081 18-333 (355)
278 2dyl_A Dual specificity mitoge 100.0 3.1E-35 1.1E-39 331.8 16.9 253 808-1081 24-283 (318)
279 3a99_A Proto-oncogene serine/t 100.0 7.5E-36 2.6E-40 336.6 10.5 244 807-1081 41-293 (320)
280 1q8y_A SR protein kinase; tran 100.0 8.7E-35 3E-39 336.1 19.0 263 808-1081 18-333 (373)
281 3p23_A Serine/threonine-protei 100.0 5.4E-35 1.9E-39 342.0 16.9 251 806-1081 21-283 (432)
282 3qa8_A MGC80376 protein; kinas 100.0 1.1E-35 3.9E-40 356.9 11.2 271 809-1089 14-310 (676)
283 3uqc_A Probable conserved tran 100.0 1.6E-34 5.4E-39 319.5 18.9 240 808-1093 30-270 (286)
284 2iwi_A Serine/threonine-protei 100.0 2.7E-35 9.3E-40 331.2 13.0 246 805-1081 27-283 (312)
285 3oja_B Anopheles plasmodium-re 100.0 1.1E-34 3.7E-39 355.8 19.3 350 50-452 6-359 (597)
286 2rio_A Serine/threonine-protei 100.0 1.7E-34 5.7E-39 339.2 19.4 250 809-1081 15-295 (434)
287 4fcg_A Uncharacterized protein 100.0 5.2E-35 1.8E-39 330.0 10.4 284 28-331 21-314 (328)
288 4fmz_A Internalin; leucine ric 100.0 1.1E-33 3.7E-38 323.4 20.0 306 339-692 41-346 (347)
289 4fmz_A Internalin; leucine ric 100.0 6.1E-33 2.1E-37 317.1 25.2 307 290-619 40-346 (347)
290 2pzi_A Probable serine/threoni 100.0 1.2E-33 4.3E-38 351.1 19.4 240 808-1086 79-326 (681)
291 3dzo_A Rhoptry kinase domain; 100.0 8E-34 2.7E-38 331.1 14.5 241 809-1080 78-362 (413)
292 3m2w_A MAP kinase-activated pr 100.0 6.1E-33 2.1E-37 309.8 20.0 229 809-1081 17-256 (299)
293 2ft3_A Biglycan; proteoglycan, 100.0 2E-32 6.9E-37 310.4 17.9 288 367-690 34-331 (332)
294 1xku_A Decorin; proteoglycan, 100.0 3.8E-32 1.3E-36 308.0 19.6 296 366-690 31-330 (330)
295 2vuw_A Serine/threonine-protei 100.0 1.2E-33 4.2E-38 321.1 6.6 245 807-1080 18-329 (336)
296 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-31 3.6E-36 304.5 20.7 266 368-642 56-331 (332)
297 1xku_A Decorin; proteoglycan, 100.0 2.9E-31 1E-35 300.7 23.6 288 343-641 32-329 (330)
298 1z7x_W Ribonuclease inhibitor; 100.0 3.3E-35 1.1E-39 350.0 -11.1 383 222-624 3-445 (461)
299 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-34 4.4E-39 344.9 -7.3 357 245-621 2-413 (461)
300 2z80_A TOLL-like receptor 2, v 100.0 1.1E-30 3.7E-35 298.9 9.8 276 394-697 35-319 (353)
301 2z66_A Variable lymphocyte rec 100.0 1.9E-30 6.5E-35 290.6 10.3 256 463-720 29-292 (306)
302 2z66_A Variable lymphocyte rec 100.0 3.6E-29 1.2E-33 280.2 18.4 249 369-621 10-263 (306)
303 3ogk_B Coronatine-insensitive 100.0 1.5E-31 5.2E-36 329.0 -2.8 381 217-619 68-501 (592)
304 3ogk_B Coronatine-insensitive 100.0 2.5E-31 8.6E-36 327.1 -2.0 394 220-616 110-548 (592)
305 3zyj_A Leucine-rich repeat-con 100.0 5.4E-29 1.9E-33 293.7 18.1 258 441-704 46-304 (440)
306 3zyi_A Leucine-rich repeat-con 100.0 4.2E-29 1.4E-33 295.7 16.6 257 441-703 57-314 (452)
307 4fcg_A Uncharacterized protein 100.0 4.4E-29 1.5E-33 281.5 14.5 233 438-691 81-313 (328)
308 2z80_A TOLL-like receptor 2, v 100.0 4.3E-29 1.5E-33 285.6 13.9 269 347-619 36-314 (353)
309 1wwl_A Monocyte differentiatio 100.0 3.1E-30 1.1E-34 289.3 3.8 249 434-693 39-310 (312)
310 1ozn_A Reticulon 4 receptor; N 100.0 2.9E-28 9.9E-33 269.8 16.5 237 438-676 32-269 (285)
311 3o53_A Protein LRIM1, AGAP0063 100.0 2.6E-29 8.8E-34 282.5 6.1 251 345-633 13-265 (317)
312 1ozn_A Reticulon 4 receptor; N 100.0 8.6E-28 3E-32 266.0 18.0 205 391-595 33-238 (285)
313 3o53_A Protein LRIM1, AGAP0063 100.0 2.7E-29 9.3E-34 282.3 5.4 265 394-673 14-281 (317)
314 1wwl_A Monocyte differentiatio 99.9 2.5E-28 8.5E-33 273.8 11.6 254 314-596 39-310 (312)
315 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-27 8E-32 287.3 18.1 266 368-678 42-307 (622)
316 3zyi_A Leucine-rich repeat-con 99.9 6.1E-27 2.1E-31 277.1 20.0 227 391-619 76-303 (452)
317 3zyj_A Leucine-rich repeat-con 99.9 6.5E-27 2.2E-31 275.9 19.9 246 369-619 46-292 (440)
318 3oja_A Leucine-rich immune mol 99.9 2.1E-28 7E-33 291.2 4.7 236 413-687 33-270 (487)
319 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-26 5.9E-31 279.7 21.4 268 343-655 41-308 (622)
320 3oja_A Leucine-rich immune mol 99.9 1.9E-27 6.4E-32 282.9 10.8 238 382-633 26-265 (487)
321 4azs_A Methyltransferase WBDD; 99.9 1.4E-27 4.7E-32 287.7 6.7 188 816-1012 241-437 (569)
322 2z62_A TOLL-like receptor 4, v 99.9 5.3E-26 1.8E-30 250.3 15.9 234 443-701 12-246 (276)
323 2o6q_A Variable lymphocyte rec 99.9 2.4E-25 8.3E-30 244.0 15.9 217 62-308 3-219 (270)
324 2p1m_B Transport inhibitor res 99.9 2.5E-28 8.5E-33 300.5 -10.4 134 485-619 371-519 (594)
325 2p1m_B Transport inhibitor res 99.9 1.3E-28 4.5E-33 303.0 -12.9 170 226-397 47-242 (594)
326 3rfs_A Internalin B, repeat mo 99.9 3.6E-25 1.2E-29 242.8 13.2 228 439-680 20-247 (272)
327 3rfs_A Internalin B, repeat mo 99.9 4.4E-25 1.5E-29 242.1 12.9 209 436-656 39-247 (272)
328 2z62_A TOLL-like receptor 4, v 99.9 1.6E-24 5.6E-29 238.4 16.6 206 438-645 28-238 (276)
329 1p9a_G Platelet glycoprotein I 99.9 7.3E-25 2.5E-29 242.2 13.4 207 483-697 7-213 (290)
330 2o6q_A Variable lymphocyte rec 99.9 1.7E-24 5.9E-29 237.2 16.0 206 488-697 18-223 (270)
331 3en9_A Glycoprotease, O-sialog 99.9 8.4E-25 2.9E-29 262.0 10.8 188 812-1014 339-539 (540)
332 3goz_A Leucine-rich repeat-con 99.9 1.1E-25 3.9E-30 257.9 1.1 260 347-626 3-304 (362)
333 3goz_A Leucine-rich repeat-con 99.9 2E-25 6.7E-30 255.9 1.2 225 395-619 3-266 (362)
334 1p9a_G Platelet glycoprotein I 99.9 5.1E-23 1.7E-27 227.4 16.7 175 417-595 34-208 (290)
335 4glp_A Monocyte differentiatio 99.9 4.5E-24 1.5E-28 239.0 7.6 226 439-693 65-308 (310)
336 2ca6_A RAN GTPase-activating p 99.9 1.6E-25 5.4E-30 259.4 -5.1 242 454-696 24-320 (386)
337 4glp_A Monocyte differentiatio 99.9 8.2E-24 2.8E-28 236.9 8.3 203 414-620 64-286 (310)
338 2ast_B S-phase kinase-associat 99.9 3.3E-24 1.1E-28 243.5 5.1 250 416-676 49-314 (336)
339 3m19_A Variable lymphocyte rec 99.9 7E-23 2.4E-27 221.7 14.4 191 62-260 3-193 (251)
340 2ca6_A RAN GTPase-activating p 99.9 1.1E-24 3.9E-29 252.2 -1.6 244 358-622 24-319 (386)
341 2ast_B S-phase kinase-associat 99.9 7.3E-24 2.5E-28 240.6 4.3 221 368-592 49-282 (336)
342 2xwt_C Thyrotropin receptor; s 99.9 2.3E-22 7.9E-27 216.0 14.7 196 415-616 32-236 (239)
343 1h6u_A Internalin H; cell adhe 99.9 1.4E-22 4.7E-27 226.3 11.9 192 436-644 39-230 (308)
344 3m19_A Variable lymphocyte rec 99.9 4.8E-22 1.6E-26 215.1 15.8 180 439-621 15-194 (251)
345 2xwt_C Thyrotropin receptor; s 99.9 4.5E-22 1.5E-26 213.7 13.9 178 367-547 32-218 (239)
346 1h6u_A Internalin H; cell adhe 99.9 2.3E-22 7.8E-27 224.5 11.9 209 442-693 23-231 (308)
347 4ay9_X Follicle-stimulating ho 99.9 1.1E-21 3.8E-26 223.4 13.4 224 463-692 31-259 (350)
348 1zar_A RIO2 kinase; serine kin 99.9 8.9E-22 3E-26 215.9 11.0 163 806-998 87-274 (282)
349 4ay9_X Follicle-stimulating ho 99.8 4.5E-21 1.5E-25 218.3 15.6 238 322-567 13-255 (350)
350 2o6s_A Variable lymphocyte rec 99.8 3E-21 1E-25 202.4 12.6 185 63-295 6-190 (208)
351 3cvr_A Invasion plasmid antige 99.8 6.7E-22 2.3E-26 236.5 8.1 210 52-318 32-254 (571)
352 2o6s_A Variable lymphocyte rec 99.8 6.7E-21 2.3E-25 199.8 14.7 133 487-619 29-161 (208)
353 3cvr_A Invasion plasmid antige 99.8 3.7E-21 1.3E-25 230.0 12.6 167 439-630 81-254 (571)
354 2v70_A SLIT-2, SLIT homolog 2 99.8 2.3E-21 7.9E-26 204.8 6.7 179 538-720 15-194 (220)
355 2v9t_B SLIT homolog 2 protein 99.8 6.4E-21 2.2E-25 201.4 6.8 179 538-720 15-193 (220)
356 4b8c_D Glucose-repressible alc 99.8 3.6E-21 1.2E-25 239.1 5.5 240 30-304 128-369 (727)
357 4b8c_D Glucose-repressible alc 99.8 1E-20 3.4E-25 235.2 8.6 192 492-694 207-406 (727)
358 1dce_A Protein (RAB geranylger 99.8 5.9E-22 2E-26 238.5 -7.0 202 461-686 348-567 (567)
359 1m9s_A Internalin B; cell inva 99.8 1.1E-19 3.7E-24 220.0 9.2 170 438-621 43-212 (605)
360 3e6j_A Variable lymphocyte rec 99.8 8.8E-19 3E-23 186.3 13.9 157 62-260 17-173 (229)
361 1h6t_A Internalin B; cell adhe 99.8 3.3E-19 1.1E-23 196.9 10.7 149 435-595 65-213 (291)
362 1m9s_A Internalin B; cell inva 99.8 7.6E-19 2.6E-23 212.6 14.1 190 319-524 22-211 (605)
363 1h6t_A Internalin B; cell adhe 99.8 5.4E-19 1.8E-23 195.3 11.5 171 363-547 43-213 (291)
364 2xot_A Amphoterin-induced prot 99.8 7.1E-19 2.4E-23 201.0 12.1 156 464-619 41-202 (361)
365 3e6j_A Variable lymphocyte rec 99.8 5.4E-19 1.8E-23 187.9 10.1 154 538-696 23-176 (229)
366 2xot_A Amphoterin-induced prot 99.8 1.5E-18 5.3E-23 198.2 12.9 176 417-596 21-203 (361)
367 2v70_A SLIT-2, SLIT homolog 2 99.8 2.7E-18 9.2E-23 181.2 13.5 114 507-620 54-167 (220)
368 1w8a_A SLIT protein; signaling 99.8 4.2E-19 1.4E-23 183.1 6.7 158 561-722 11-169 (192)
369 2v9t_B SLIT homolog 2 protein 99.8 2.9E-18 1E-22 180.9 13.2 132 488-619 34-165 (220)
370 1dce_A Protein (RAB geranylger 99.8 3.2E-20 1.1E-24 223.5 -2.8 217 123-373 346-567 (567)
371 1xeu_A Internalin C; cellular 99.7 9.5E-19 3.3E-23 190.1 7.1 169 438-621 19-187 (263)
372 4ezg_A Putative uncharacterize 99.7 8.4E-18 2.9E-22 174.3 11.5 154 459-619 41-194 (197)
373 1xeu_A Internalin C; cellular 99.7 5E-18 1.7E-22 184.4 9.9 169 342-525 19-187 (263)
374 1zth_A RIO1 serine protein kin 99.7 2.6E-18 8.8E-23 186.1 6.6 139 811-962 49-219 (258)
375 4ezg_A Putative uncharacterize 99.7 2.4E-17 8.1E-22 170.9 11.7 150 438-595 44-194 (197)
376 1w8a_A SLIT protein; signaling 99.7 1.2E-16 4.2E-21 164.6 13.1 132 489-623 11-143 (192)
377 2wfh_A SLIT homolog 2 protein 99.7 1.7E-17 5.9E-22 170.9 6.1 157 561-722 13-169 (193)
378 3sb4_A Hypothetical leucine ri 99.7 4.7E-17 1.6E-21 183.4 7.8 290 269-588 24-327 (329)
379 3sb4_A Hypothetical leucine ri 99.7 5.8E-17 2E-21 182.7 8.5 296 236-564 13-327 (329)
380 2ell_A Acidic leucine-rich nuc 99.6 8.3E-16 2.8E-20 154.8 10.6 132 462-595 24-160 (168)
381 2ell_A Acidic leucine-rich nuc 99.6 1.2E-15 4.1E-20 153.6 11.5 132 414-547 24-160 (168)
382 4gyi_A RIO2 kinase; protein ki 99.6 2.8E-16 9.6E-21 175.7 6.1 141 811-963 97-266 (397)
383 2je0_A Acidic leucine-rich nuc 99.6 1.2E-15 4.1E-20 150.2 8.5 126 463-590 18-148 (149)
384 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 150.5 7.6 127 486-614 17-148 (149)
385 2o6r_A Variable lymphocyte rec 99.6 1E-15 3.5E-20 155.6 7.0 133 561-697 10-142 (177)
386 2wfh_A SLIT homolog 2 protein 99.6 8.6E-15 2.9E-19 150.7 12.4 126 442-571 14-139 (193)
387 2o6r_A Variable lymphocyte rec 99.6 8E-15 2.7E-19 148.9 11.5 132 489-623 10-141 (177)
388 1ds9_A Outer arm dynein; leuci 99.5 1.8E-16 6.1E-21 164.4 -3.5 132 481-619 43-185 (198)
389 4fdw_A Leucine rich hypothetic 99.5 4.2E-14 1.4E-18 162.6 15.5 249 357-617 127-381 (401)
390 4fdw_A Leucine rich hypothetic 99.5 8.3E-14 2.8E-18 160.1 16.2 113 455-570 264-382 (401)
391 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-14 6.2E-19 146.1 8.7 131 459-595 16-153 (176)
392 1ds9_A Outer arm dynein; leuci 99.5 4.6E-16 1.6E-20 161.3 -3.5 114 433-551 43-157 (198)
393 1a9n_A U2A', U2A'; complex (nu 99.5 3.2E-14 1.1E-18 144.2 7.6 105 463-571 43-153 (176)
394 4fs7_A Uncharacterized protein 99.5 7.1E-13 2.4E-17 153.1 19.7 41 190-231 63-103 (394)
395 4fs7_A Uncharacterized protein 99.5 6.7E-13 2.3E-17 153.4 18.2 334 234-610 59-392 (394)
396 3g39_A Variable lymphocyte rec 99.4 6.5E-14 2.2E-18 140.9 6.0 110 584-697 11-120 (170)
397 2r9u_A Variable lymphocyte rec 99.4 1.8E-13 6.2E-18 138.1 6.0 108 585-696 15-122 (174)
398 3g39_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 131.9 10.4 85 487-571 31-115 (170)
399 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.5E-17 131.7 9.5 103 442-547 16-118 (174)
400 3un9_A NLR family member X1; l 99.3 1.6E-13 5.6E-18 156.1 -2.8 136 462-597 101-254 (372)
401 3un9_A NLR family member X1; l 99.3 1.2E-13 4E-18 157.3 -4.7 144 438-581 101-262 (372)
402 2ifg_A High affinity nerve gro 99.3 2.3E-12 8E-17 146.2 5.5 108 587-698 13-122 (347)
403 4gt6_A Cell surface protein; l 99.2 7E-10 2.4E-14 127.9 19.5 334 192-571 57-391 (394)
404 2ifg_A High affinity nerve gro 99.1 5.7E-11 2E-15 134.7 9.8 89 482-571 27-116 (347)
405 3tm0_A Aminoglycoside 3'-phosp 99.1 1.6E-10 5.4E-15 125.4 12.2 143 809-961 14-213 (263)
406 4gt6_A Cell surface protein; l 99.1 1.2E-09 4.3E-14 125.8 20.2 335 258-617 51-389 (394)
407 1nd4_A Aminoglycoside 3'-phosp 99.0 7E-10 2.4E-14 120.1 9.5 129 818-961 29-214 (264)
408 3dxp_A Putative acyl-COA dehyd 98.9 4.7E-09 1.6E-13 119.4 11.6 143 813-961 42-248 (359)
409 4h09_A Hypothetical leucine ri 98.9 4.8E-08 1.7E-12 111.9 19.2 109 433-544 235-343 (379)
410 2ra8_A Uncharacterized protein 98.8 1.8E-09 6.1E-14 121.6 4.7 63 533-595 251-320 (362)
411 2ra8_A Uncharacterized protein 98.8 2.4E-09 8.2E-14 120.5 5.5 158 432-593 166-341 (362)
412 3sg8_A APH(2'')-ID; antibiotic 98.8 2.5E-09 8.5E-14 118.6 5.2 185 814-1013 25-287 (304)
413 4h09_A Hypothetical leucine ri 98.7 2.8E-07 9.4E-12 105.6 20.5 132 481-616 212-343 (379)
414 3rw6_A Nuclear RNA export fact 98.6 1.2E-10 4.2E-15 124.0 -13.8 12 63-74 77-88 (267)
415 3r70_A Aminoglycoside phosphot 98.5 4.5E-07 1.5E-11 101.0 11.3 137 810-962 38-238 (320)
416 3rw6_A Nuclear RNA export fact 98.3 8.1E-08 2.8E-12 102.3 1.0 16 559-574 221-236 (267)
417 4gkh_A Aminoglycoside 3'-phosp 98.3 3E-06 1E-10 91.8 12.1 135 816-961 31-223 (272)
418 1io0_A Tropomodulin; LRR prote 98.3 1.6E-07 5.4E-12 95.3 1.1 14 605-618 150-163 (185)
419 1io0_A Tropomodulin; LRR prote 98.3 1.2E-07 4.1E-12 96.2 0.2 116 480-595 30-164 (185)
420 3d1u_A Putative fructosamine-3 98.3 6.1E-06 2.1E-10 89.9 13.7 141 812-961 18-216 (288)
421 3tdw_A Gentamicin resistance p 98.2 6.3E-06 2.2E-10 90.9 12.6 136 814-961 24-224 (306)
422 3ovc_A Hygromycin-B 4-O-kinase 98.1 1.1E-05 3.7E-10 91.1 10.6 141 813-962 45-244 (362)
423 3ats_A Putative uncharacterize 98.0 4.7E-06 1.6E-10 94.3 7.4 84 814-897 25-122 (357)
424 2olc_A MTR kinase, methylthior 97.7 9.7E-05 3.3E-09 84.8 11.8 78 814-893 35-120 (397)
425 2q83_A YTAA protein; 2635576, 97.6 0.00015 5E-09 81.4 11.1 139 815-961 38-252 (346)
426 2pyw_A Uncharacterized protein 97.6 7.1E-05 2.4E-09 86.5 8.6 77 930-1009 231-312 (420)
427 3e4g_A ATP synthase subunit S, 97.6 2.3E-05 7.9E-10 77.1 3.1 84 222-305 61-150 (176)
428 3jr1_A Putative fructosamine-3 97.6 0.00021 7.2E-09 78.3 10.9 136 814-957 41-232 (312)
429 3f7w_A Putative fructosamine-3 97.6 0.00022 7.6E-09 77.7 10.9 80 809-895 15-97 (288)
430 3e4g_A ATP synthase subunit S, 97.5 3.8E-05 1.3E-09 75.6 2.9 82 511-592 62-149 (176)
431 3rfe_A Platelet glycoprotein I 97.2 0.00014 4.7E-09 68.4 2.7 84 635-720 12-98 (130)
432 3dxq_A Choline/ethanolamine ki 97.1 0.0011 3.8E-08 72.6 9.2 137 814-962 23-203 (301)
433 2ppq_A HSK, HK, homoserine kin 97.0 0.0017 5.7E-08 71.9 10.1 156 800-961 8-217 (322)
434 3csv_A Aminoglycoside phosphot 97.0 0.0024 8.1E-08 71.1 10.6 139 816-962 25-218 (333)
435 1zyl_A Hypothetical protein YI 96.9 0.0048 1.6E-07 68.4 12.4 140 815-961 32-223 (328)
436 3feg_A Choline/ethanolamine ki 96.8 0.0034 1.2E-07 70.6 9.7 139 815-961 56-254 (379)
437 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00022 7.4E-09 71.6 -0.6 15 532-546 155-169 (197)
438 1nw1_A Choline kinase (49.2 KD 96.7 0.0036 1.2E-07 72.0 9.5 72 815-895 79-159 (429)
439 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00053 1.8E-08 68.8 1.7 14 510-523 98-111 (197)
440 2qg7_A Ethanolamine kinase PV0 96.3 0.01 3.6E-07 68.5 9.9 73 815-895 114-188 (458)
441 3c5i_A Choline kinase; choline 96.2 0.0054 1.8E-07 69.3 7.0 73 815-895 39-121 (369)
442 3i1a_A Spectinomycin phosphotr 96.2 0.024 8.3E-07 62.9 12.2 32 931-962 206-237 (339)
443 2yle_A Protein spire homolog 1 95.9 0.038 1.3E-06 55.5 10.3 102 894-1012 34-135 (229)
444 3rfe_A Platelet glycoprotein I 95.8 0.0095 3.3E-07 55.7 5.6 36 511-546 32-67 (130)
445 3f2s_A CK, chetk-alpha, cholin 95.5 0.029 9.9E-07 63.2 9.0 143 815-961 58-280 (401)
446 3mes_A Choline kinase; malaria 94.4 0.056 1.9E-06 61.5 7.3 73 815-895 76-157 (424)
447 3g15_A CK, chetk-alpha, cholin 90.4 0.17 6E-06 57.4 4.4 30 932-961 245-280 (401)
448 4ann_A ESSB; membrane protein, 74.0 6.5 0.00022 39.4 7.2 115 866-1014 43-158 (215)
449 4ano_A ESSB; membrane protein, 66.7 10 0.00034 38.2 6.8 115 866-1014 48-163 (219)
450 3cxl_A N-chimerin; SH2, RHO-GA 65.2 0.81 2.8E-05 52.7 -1.8 63 813-879 146-215 (463)
451 2k1k_A Ephrin type-A receptor 47.9 13 0.00044 25.7 2.6 6 750-755 14-19 (38)
452 2l2t_A Receptor tyrosine-prote 43.3 19 0.00066 25.7 3.0 12 748-759 11-22 (44)
453 2x6h_A GH13170P, VPS34, phosph 35.7 1.5E+02 0.0052 35.3 11.0 45 909-960 529-575 (696)
454 3ls8_A Phosphatidylinositol 3- 32.7 1.5E+02 0.0052 34.7 10.1 46 908-960 454-501 (614)
455 1cja_A Protein (actin-fragmin 29.2 90 0.0031 33.4 6.8 141 811-961 71-237 (342)
456 2knc_A Integrin alpha-IIB; tra 29.0 52 0.0018 24.7 3.5 19 748-766 15-33 (54)
457 2k9y_A Ephrin type-A receptor 28.8 40 0.0014 23.6 2.8 14 747-760 13-26 (41)
458 2lz0_A Uncharacterized protein 28.7 38 0.0013 29.2 3.3 47 257-304 7-53 (100)
459 2jwa_A Receptor tyrosine-prote 28.6 30 0.001 24.7 2.0 8 748-755 13-20 (44)
460 2l8s_A Integrin alpha-1; trans 22.1 83 0.0028 23.5 3.4 19 748-766 12-30 (54)
461 2lz0_A Uncharacterized protein 22.0 94 0.0032 26.7 4.5 38 192-230 14-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.3e-96 Score=928.19 Aligned_cols=682 Identities=32% Similarity=0.500 Sum_probs=643.3
Q ss_pred cCCCcchHHHHHHhHhhccCCCCCCCCCCCCCCCCCccceEEEecCCCccEEEEEeecCCCcCcc---cCCCCCCCCccC
Q 001253 29 KGLVNIEGQILLLIKSKLVDNSNYLGNWNPNDSTPCGWIGVNCTTNDFGAVVFSLNLTKMNLSGY---LSPNIGGLVHLT 105 (1114)
Q Consensus 29 ~~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~C~w~gv~C~~~~~~~~v~~l~l~~~~l~g~---~~~~l~~l~~L~ 105 (1114)
..+.++|++|||+||+++.||. .+++|+. +.+||.|.||+|+ .++|++|+|+++++.|. +++++++|++|+
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~-~~~~C~w~gv~C~----~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSS-NKNPCTFDGVTCR----DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCT-TSCGGGSTTEEEE----TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCC-CCCCcCCcceEEC----CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 3446789999999999999988 9999984 4679999999997 26899999999999999 999999999999
Q ss_pred EEEecCCcccCCCCcccCCCCCCCEEEccCCCccccccc--ccccccccceeccccccccCCCCccc-ccCcccchhhhc
Q 001253 106 ALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHIPK--ELGNLSSLTILNIYNNRISGPFPKEI-GKLSALSQLVAY 182 (1114)
Q Consensus 106 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~l~ 182 (1114)
.++++.|.+. .+|+.|+.+++|++|+|++|.++|.+|. .++++++|++|+|++|++.+.+|..+ .++++|++|+++
T Consensus 81 ~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 81 SLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp EEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred ccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 9999999885 4778999999999999999999999998 99999999999999999999999887 899999999999
Q ss_pred ccccCCCCCCC---ccccccccceeccccccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCccc
Q 001253 183 SNNISGSLPPT---LGNLKRLKSFRAGQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLS 259 (1114)
Q Consensus 183 ~n~i~~~~p~~---l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 259 (1114)
+|++++..|.. +.++++|++|++++|.+.+..|. ..+++|++|+|++|++++.+|. ++.+++|++|++++|+++
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence 99999988887 89999999999999999977664 8899999999999999988887 999999999999999999
Q ss_pred CccccccccccccchhhcccccccCCchhhhcCCCccceeeecccccccccCcccccc-ccccccccccccCCCCCchhh
Q 001253 260 GVIPKELGNCTSLETLALYDNKQVGQLPKELGSIGSLKYLYIYRNELNGTIPREIGKL-SSALEIDFSENSLIGEIPVEL 338 (1114)
Q Consensus 260 ~~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~~~~l 338 (1114)
+.+|..++++++|++|++++|.+.+.+|.. .+++|++|+|++|.+.+.+|..+... ++|++|++++|++.+.+|..+
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH
Confidence 999999999999999999999999888875 89999999999999999999998876 999999999999999999999
Q ss_pred hcccccceeecccccccCccccc-ccccccCCEEEcccccccccccCcccccc-ceeeeeccCCcccCCCCCCCCc--Cc
Q 001253 339 SKILGLELLYLFENKLTGVIPVE-LTTLKNLTKLDLSINSLTGTIPLGFQYLT-NLIMLQLFDNSLVGGIPQRLGA--YS 414 (1114)
Q Consensus 339 ~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~--l~ 414 (1114)
..+++|+.|++++|++++.+|.. +..+++|++|+|++|++++.+|..+..++ +|++|++++|++.+.+|..+.. ++
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 394 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence 99999999999999999777765 99999999999999999999999999998 9999999999999999888877 88
Q ss_pred cceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecc
Q 001253 415 QLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELD 494 (1114)
Q Consensus 415 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 494 (1114)
+|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|+++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCC
Q 001253 495 QNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGAL 574 (1114)
Q Consensus 495 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 574 (1114)
+|++++.+|..+.++++|++|+|++|++++.+|.+++.+++|++|+|++|++++.+|..+..+++|+.|+|++|+++|.+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccc----------------------------------------------CCeeeccCccCCCcccccccccccc
Q 001253 575 PREIGSLFQ----------------------------------------------LELLKLSENELSGSIPVQIGNLSRL 608 (1114)
Q Consensus 575 p~~~~~l~~----------------------------------------------L~~L~L~~N~l~~~~p~~~~~l~~L 608 (1114)
|..+..... ++.++++.|.++|.+|..++.+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 988765433 3345566688899999999999999
Q ss_pred cccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccccccccceEEecc
Q 001253 609 TELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSY 688 (1114)
Q Consensus 609 ~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~ 688 (1114)
+.|||++|+|+|.+|.++++++.|+ .|+|++|+++|.+|..|+++++|++||||+|+|+|.||..|.++++|+.||+|+
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~-~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLF-ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCC-EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred cEEECcCCcccccCCHHHhccccCC-EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 9999999999999999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCcccccccccccccCCCCCCCCCCCCC
Q 001253 689 NNLTGPIPSSQTFQNMSVNSFSGSKGLCGGPLQNC 723 (1114)
Q Consensus 689 N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~p~~~~ 723 (1114)
|+++|.||.+++|++++..+|.||+++||.|+..|
T Consensus 714 N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C 748 (768)
T 3rgz_A 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748 (768)
T ss_dssp SEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCC
T ss_pred CcccccCCCchhhccCCHHHhcCCchhcCCCCcCC
Confidence 99999999999999999999999999999998655
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.1e-77 Score=754.82 Aligned_cols=604 Identities=33% Similarity=0.466 Sum_probs=561.9
Q ss_pred EeecCCCcCcccC--CCCCCCCccCEEEecCCcccCCCCc--ccCCCCCCCEEEccCCCccccccccc-ccccccceecc
Q 001253 83 LNLTKMNLSGYLS--PNIGGLVHLTALDLSFNQLSRNIPK--EIGNCSSLEVLNLNNNRLEAHIPKEL-GNLSSLTILNI 157 (1114)
Q Consensus 83 l~l~~~~l~g~~~--~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L 157 (1114)
|++.++...|.++ +.++.+++|++|||++|.++|.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|+|
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 3444444455444 8899999999999999999999998 99999999999999999998888876 89999999999
Q ss_pred ccccccCCCCcc---cccCcccchhhhcccccCCCCCCCccccccccceeccccccccccCCCCCCCCccceeecccccc
Q 001253 158 YNNRISGPFPKE---IGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQNLISGSLPSEIGGCESLQYLGLAQNQL 234 (1114)
Q Consensus 158 ~~N~l~~~~p~~---~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 234 (1114)
++|++++..|.. +.++++|++|++++|.+++.+|. .++++|++|++++|.+.+.+|. ++++++|++|+|++|++
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence 999999888887 88999999999999999987764 8899999999999999988887 99999999999999999
Q ss_pred CCCCcccccccccccEEEecCCcccCccccccccccccchhhcccccccCCchhhhcCC-CccceeeecccccccccCcc
Q 001253 235 SGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQVGQLPKELGSI-GSLKYLYIYRNELNGTIPRE 313 (1114)
Q Consensus 235 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~ 313 (1114)
++.+|..++.+++|++|++++|++++.+|.. .+++|++|++++|.+.+.+|..+..+ ++|++|+|++|++.+.+|..
T Consensus 236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 313 (768)
T 3rgz_A 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313 (768)
T ss_dssp CSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG
T ss_pred CCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH
Confidence 9999999999999999999999999888875 89999999999999999999998875 99999999999999999999
Q ss_pred ccccccccccccccccCCCCCchh-hhcccccceeecccccccCcccccccccc-cCCEEEcccccccccccCcccc--c
Q 001253 314 IGKLSSALEIDFSENSLIGEIPVE-LSKILGLELLYLFENKLTGVIPVELTTLK-NLTKLDLSINSLTGTIPLGFQY--L 389 (1114)
Q Consensus 314 l~~l~~L~~L~ls~N~l~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~--l 389 (1114)
++.+++|++|++++|.+.+.+|.. +.++++|+.|++++|++++.+|..+..++ +|++|++++|++++.+|..+.. +
T Consensus 314 ~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 999999999999999999888876 99999999999999999999999999988 9999999999999999988877 8
Q ss_pred cceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEee
Q 001253 390 TNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRL 469 (1114)
Q Consensus 390 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 469 (1114)
++|++|++++|++.+.+|..+..+++|++|+|++|++++.+|..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeeccccccccc
Q 001253 470 GGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGR 549 (1114)
Q Consensus 470 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 549 (1114)
++|++++.+|..+..+++|++|+|++|++++.+|.+++.+++|++|+|++|+++|.+|..++++++|+.|++++|+++|.
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccc----------------------------------------------eEEECccccccCCCchhhhhccc
Q 001253 550 IPLEIFSCKML----------------------------------------------QRLDLSWNKFVGALPREIGSLFQ 583 (1114)
Q Consensus 550 ~p~~~~~l~~L----------------------------------------------~~L~Ls~N~l~~~~p~~~~~l~~ 583 (1114)
+|..++.+..+ +.++++.|.+.|.+|..++.+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 99887664433 33455668889999999999999
Q ss_pred CCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhcc
Q 001253 584 LELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLN 663 (1114)
Q Consensus 584 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 663 (1114)
|++|||++|+++|.+|..++++++|+.|+|++|+|+|.+|..++++++|+ .||||+|+++|.+|..++++++|++||||
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN-ILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC-EEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCC-EEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 99999999999999999999999999999999999999999999999999 79999999999999999999999999999
Q ss_pred CcccccCCCCccccccccceEEeccCc-ccC
Q 001253 664 NNHLSGEIPGSFVNLSSLLGCNFSYNN-LTG 693 (1114)
Q Consensus 664 ~N~l~g~ip~~~~~l~~l~~l~ls~N~-l~g 693 (1114)
+|+|+|.||.. ..+..+....+.+|+ |+|
T Consensus 713 ~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 713 NNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp SSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred CCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 99999999975 445566667788886 666
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-65 Score=643.29 Aligned_cols=619 Identities=21% Similarity=0.197 Sum_probs=444.8
Q ss_pred eecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCCCCCCEEEccCCCcccccccccccccccceecccccccc
Q 001253 84 NLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRIS 163 (1114)
Q Consensus 84 ~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 163 (1114)
++++++++ .+|..+. +++++|+|++|++++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|+++
T Consensus 10 ~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 10 DCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp ECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred ECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC
Confidence 33444454 3555554 67899999999998777778888999999999999988888888888999999999999888
Q ss_pred CCCCcccccCcccchhhhcccccCCCCCCCccccccccceeccccccccccCCCCCCCCccceeeccccccCCCCccccc
Q 001253 164 GPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIG 243 (1114)
Q Consensus 164 ~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 243 (1114)
+..+..|+++++|++|++++|++++..|.+|+++++|++|++++|.+++..|..++++++|++|+|++|++++..+..++
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhh
Confidence 55555788888888888888888877777888888888888888888877777788888888888888888766666554
Q ss_pred --ccccccEEEecCCcccCccccccccccccchhhcccccccCCchhhhc---CCCccceeeecccccccccCccccccc
Q 001253 244 --MLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQVGQLPKELG---SIGSLKYLYIYRNELNGTIPREIGKLS 318 (1114)
Q Consensus 244 --~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~---~l~~L~~L~L~~n~l~~~~p~~l~~l~ 318 (1114)
.+++|++|++++|++++..|..+..+++|+.|++++|.+.......+. ..++|++|++++|.+.+..|..+..++
T Consensus 167 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~ 246 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLK 246 (680)
T ss_dssp GGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGG
T ss_pred ccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccC
Confidence 447788888888888877777777777888887777765433222221 236677777777777666666666554
Q ss_pred c--ccccccccccCCCCCchhhhcccccceeecccccccCcccccccccccCCEEEcccccccccccCccccccceeeee
Q 001253 319 S--ALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQ 396 (1114)
Q Consensus 319 ~--L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 396 (1114)
. |++|++++|.+.+..|..+..+++|+.|++++|++++..|..|..+++|++|++++|...+.++.
T Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~------------ 314 (680)
T 1ziw_A 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL------------ 314 (680)
T ss_dssp GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----------------
T ss_pred cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc------------
Confidence 3 66666666666555555555555555555555555555555555555555555555443321110
Q ss_pred ccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCC--cCcccccC--CcceEEeeccc
Q 001253 397 LFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGS--IPTGVTRC--KSLVQLRLGGN 472 (1114)
Q Consensus 397 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~--~p~~~~~l--~~L~~L~L~~N 472 (1114)
+.+.......|..+++|++|++++|++++..+..|..+++|++|++++|.+... ....+..+ ++|+.|++++|
T Consensus 315 ---~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n 391 (680)
T 1ziw_A 315 ---ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391 (680)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred ---ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence 000001112455666777777777777766666666777777777777664322 12223322 57888888888
Q ss_pred eeeccCCchhhccccccEeecccccCCCCcc-ccccccccCcEEEecCceeccCCCccccCCCCcceeeccccccc--cc
Q 001253 473 SFTGSFPSDLCKLANLSTVELDQNQFSGPIP-TEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLT--GR 549 (1114)
Q Consensus 473 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~ 549 (1114)
++++..|..|..+++|++|+|++|++++.+| ..|.++++|++|++++|++++..+..|..+++|+.|++++|.++ +.
T Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 471 (680)
T 1ziw_A 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence 8887778888888888888888888876554 67788888888888888888777888888888888888888876 46
Q ss_pred ccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCccc--------ccccccccccccccCCCcCCCC
Q 001253 550 IPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIP--------VQIGNLSRLTELQMGGNSFSGG 621 (1114)
Q Consensus 550 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--------~~~~~l~~L~~L~ls~N~l~~~ 621 (1114)
+|..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+ ..+.++++|+.|+|++|+|+..
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 77788888888888888888887777778888888888888888885422 2378899999999999999955
Q ss_pred CChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccc-cccccceEEeccCcccCCCCC-cc
Q 001253 622 IPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFV-NLSSLLGCNFSYNNLTGPIPS-SQ 699 (1114)
Q Consensus 622 ~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~-~l~~l~~l~ls~N~l~g~ip~-~~ 699 (1114)
.+..|..+++|+ .|+|++|++++..+..|.++++|+.|+|++|+|++.+|..|. .+++|+.+++++|+|.|.++. .+
T Consensus 552 ~~~~~~~l~~L~-~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~ 630 (680)
T 1ziw_A 552 PVEVFKDLFELK-IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW 630 (680)
T ss_dssp CTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSS
T ss_pred CHHHcccccCcc-eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHH
Confidence 556789999998 799999999988788889999999999999999999988888 899999999999999999986 44
Q ss_pred ccccccccc--cc--CCCCCCCCCCC
Q 001253 700 TFQNMSVNS--FS--GSKGLCGGPLQ 721 (1114)
Q Consensus 700 ~~~~~~~~~--~~--~n~~lc~~p~~ 721 (1114)
-..++.... +. .....|..|..
T Consensus 631 ~~~~~~~~~~~~~~~~~~~~C~~p~~ 656 (680)
T 1ziw_A 631 FVNWINETHTNIPELSSHYLCNTPPH 656 (680)
T ss_dssp EECCSSCC------------------
T ss_pred HHHHHHhcCcccccccCCcEECCchH
Confidence 434443321 11 23446776653
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.4e-64 Score=627.45 Aligned_cols=598 Identities=21% Similarity=0.201 Sum_probs=430.8
Q ss_pred CccceEEEe-------cCCCccEEEEEeecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCCCCCCEEEccCC
Q 001253 64 CGWIGVNCT-------TNDFGAVVFSLNLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNN 136 (1114)
Q Consensus 64 C~w~gv~C~-------~~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 136 (1114)
|.+.-|.|+ +.+.+..++.|+|+++++++..+..++++++|++|+|++|.+++..|..++++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 444445554 3344556899999999999988888999999999999999999999999999999999999999
Q ss_pred CcccccccccccccccceeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccceeccccccccccCC
Q 001253 137 RLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQNLISGSLPS 216 (1114)
Q Consensus 137 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 216 (1114)
.+++..+..|+++++|++|+|++|++++..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+++..+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 99976666899999999999999999988889999999999999999999999999999999999999999999987776
Q ss_pred CCC--CCCccceeeccccccCCCCcccccccccccEEEecCCcccCccccccc---cccccchhhcccccccCCchhhhc
Q 001253 217 EIG--GCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELG---NCTSLETLALYDNKQVGQLPKELG 291 (1114)
Q Consensus 217 ~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~Ls~N~~~~~~p~~~~ 291 (1114)
.+. .+++|++|++++|++++..|..+..+++|+.|++.+|.+.+.....+. ..++|+.|++++|.+.+..|..|.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 654 568999999999999998999999999999999999998754333222 347899999999999999999999
Q ss_pred CCCc--cceeeecccccccccCccccccccccccccccccCCCCCchhhhcccccceeecccccccCc-----cc----c
Q 001253 292 SIGS--LKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGV-----IP----V 360 (1114)
Q Consensus 292 ~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-----~~----~ 360 (1114)
.++. |++|+|++|++.+..|..++.+++|++|++++|.+.+..|..+..+++|+.|++++|...+. +| .
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 8865 99999999999988889999999999999999999999999999999999999998765532 12 2
Q ss_pred cccccccCCEEEcccccccccccCccccccceeeeeccCCcccCC--CCCCCCcC--ccceEEEeecccccCCCCccccc
Q 001253 361 ELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGG--IPQRLGAY--SQLWVVDLSDNHLTGKIPRHICR 436 (1114)
Q Consensus 361 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~ 436 (1114)
.|..+++|++|++++|.+++..+..|..+++|++|++++|.+... ....|..+ ++|++|++++|++++..|..|..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 566677777777777777776666677777777777777654321 11222222 34555555555555544555555
Q ss_pred cCccceeeeccCCccCCcC-cccccCCcceEEeeccceeeccCCchhhccccccEeecccccCC--CCccccccccccCc
Q 001253 437 NTSLIFLNLETNKLTGSIP-TGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFS--GPIPTEIGNCNALQ 513 (1114)
Q Consensus 437 ~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~ 513 (1114)
+++|++|++++|++++.+| ..+..+++|++|++++|++.+..+..|..+++|+.|++++|.++ +.+|..|.++++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 5555555555555544333 34444555555555555554444444444555555555555443 23444444444445
Q ss_pred EEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCcc
Q 001253 514 RLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENE 593 (1114)
Q Consensus 514 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 593 (1114)
.|+|++|+|++..+..|.++++|++|+|++|++++..+..+ .+..+..+..+++|++|+|++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN----------------PGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS----------------TTSCCCTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc----------------cCCcchhhcCCCCCCEEECCCCC
Confidence 55554444444444444444444444444444442111000 00011235666677777777777
Q ss_pred CCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCcccc-chhhhHhhhccCcccccCCC
Q 001253 594 LSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELG-NLILLEYLLLNNNHLSGEIP 672 (1114)
Q Consensus 594 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~g~ip 672 (1114)
++...+..|.++++|+.|+|++|+|++..+..|..+++|+ .|+|++|+|++..|..++ .+++|+.|+|++|++....+
T Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK-SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCC-EEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 7644344567777777777777777755555566777776 577777777777666666 67788888888888887665
Q ss_pred --Cccccc
Q 001253 673 --GSFVNL 678 (1114)
Q Consensus 673 --~~~~~l 678 (1114)
.+|..+
T Consensus 627 ~~~~~~~~ 634 (680)
T 1ziw_A 627 SIAWFVNW 634 (680)
T ss_dssp CCSSEECC
T ss_pred cHHHHHHH
Confidence 344443
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-59 Score=580.58 Aligned_cols=563 Identities=21% Similarity=0.191 Sum_probs=381.5
Q ss_pred CEEEecCCcccCCCCcccCCCCCCCEEEccCCCcccccccccccccccceeccccccccCCCCcccccCcccchhhhccc
Q 001253 105 TALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSN 184 (1114)
Q Consensus 105 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n 184 (1114)
+.++.++..++ .+|..+.. ++++|+|++|.+++..|..|+++++|++|+|++|++++..|.+|+++++|++|++++|
T Consensus 15 ~~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 68999998886 68877754 7899999999999888889999999999999999998777777877777777777777
Q ss_pred ccCCCCCCCccccccccceeccccccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCcccCcccc
Q 001253 185 NISGSLPPTLGNLKRLKSFRAGQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPK 264 (1114)
Q Consensus 185 ~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 264 (1114)
++++..|.+|+++++|++|++++|.+++..|..++++++|++|+|++|++++..+..+..+++|++|++++|.+++..|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 77766666777777777777776666655566666666666666666666643323333356666666666666555455
Q ss_pred ccccccccc--hhhcccccccCCchhhhcCCCccceeeecccccccccCccccccccccccccccccCCCCCchhhhccc
Q 001253 265 ELGNCTSLE--TLALYDNKQVGQLPKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKIL 342 (1114)
Q Consensus 265 ~l~~l~~L~--~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~ 342 (1114)
.++.+++|+ .|++++|.+.+..|..+.. .+|++|++++|. .++..+..+.
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-------------------------~~L~~L~l~~~~---~~~~~~~~l~ 223 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-------------------------AVFQSLNFGGTQ---NLLVIFKGLK 223 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTT-------------------------CEEEEEECTTCS---CHHHHHHHTT
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhh-------------------------ccccccccCCch---hHHHHhhhcc
Confidence 555555555 4455555444444433322 344444444443 2223333333
Q ss_pred ccceeecccccccCcccccccccccCCEEEcccccccccccCcccccc--ceeeeeccCCcccCCCCCCCCcCccceEEE
Q 001253 343 GLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLT--NLIMLQLFDNSLVGGIPQRLGAYSQLWVVD 420 (1114)
Q Consensus 343 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 420 (1114)
++....+.-+.+. .+...+++ +..|..+. +|+.|++++|.+.+..+..|..+++|++|+
T Consensus 224 ~~~l~~l~~~~~~-----------~~~~~~i~--------~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 224 NSTIQSLWLGTFE-----------DMDDEDIS--------PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284 (606)
T ss_dssp TCEEEEEECCCCT-----------TSCCCCCC--------GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred ccchhheechhhc-----------cccccccC--------hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence 3222222211111 11111111 11122221 455555555555555555556666666666
Q ss_pred eecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCc-hhhccccccEeecccccCC
Q 001253 421 LSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPS-DLCKLANLSTVELDQNQFS 499 (1114)
Q Consensus 421 Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~ 499 (1114)
+++|+++ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|+++
T Consensus 285 l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 285 LTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp CTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred ccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence 6666665 4555566666666666666666655566666666666677766666654444 3666777777777777776
Q ss_pred CCc--cccccccccCcEEEecCceeccCCCccccCCCCcceeeccccccccccccc-ccccccceEEECccccccCCCch
Q 001253 500 GPI--PTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLE-IFSCKMLQRLDLSWNKFVGALPR 576 (1114)
Q Consensus 500 ~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~ 576 (1114)
+.. |..+..+++|++|++++|++++..|..|..+++|++|++++|++++..|.. +..+++|+.|++++|.+++..|.
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 554 566777777777777777777777777777777777777777777655544 66777888888888888777777
Q ss_pred hhhhcccCCeeeccCccCCCc---ccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccc
Q 001253 577 EIGSLFQLELLKLSENELSGS---IPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGN 653 (1114)
Q Consensus 577 ~~~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~ 653 (1114)
.++.+++|++|++++|++++. .+..+..+++|+.|++++|++++.+|..+..+++|+ .|+|++|++++.+|..+.+
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~ 522 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN-HVDLSHNRLTSSSIEALSH 522 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEECCSSCCCGGGGGGGTT
T ss_pred HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC-EEECCCCccCcCChhHhCc
Confidence 788888888888888888752 235678888888888888888888888888888888 7899999999988999999
Q ss_pred hhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCCCccccccccccc---ccCCCCCCCCCC
Q 001253 654 LILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPSSQTFQNMSVNS---FSGSKGLCGGPL 720 (1114)
Q Consensus 654 l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~~~~~~~~~~~~---~~~n~~lc~~p~ 720 (1114)
++.| +|||++|++++.+|..|..+++|+.+++++|+|.|.++..+...++.... .......|..|.
T Consensus 523 l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~ 591 (606)
T 3t6q_A 523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPP 591 (606)
T ss_dssp CCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESG
T ss_pred cccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCch
Confidence 9999 99999999999999999999999999999999999998765555443221 112234676654
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-58 Score=589.15 Aligned_cols=541 Identities=21% Similarity=0.169 Sum_probs=363.1
Q ss_pred CEEEecCCcccCCCCcccCCCCCCCEEEccCCCcccccccccccccccceeccccccccCCC-CcccccCcccchhhhcc
Q 001253 105 TALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPF-PKEIGKLSALSQLVAYS 183 (1114)
Q Consensus 105 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~ 183 (1114)
+..|.++++++ .+|. -.++|++|+|++|.+++..|..|.++++|++|+|++|.+.+.+ |.+|+++++|++|++++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 57888999997 5776 4588999999999999888999999999999999999665555 77788888888888888
Q ss_pred cccCCCCCCCccccccccceeccccccccccCCC--CCCCCccceeeccccccCCCCc-ccccccccccEEEecCCcccC
Q 001253 184 NNISGSLPPTLGNLKRLKSFRAGQNLISGSLPSE--IGGCESLQYLGLAQNQLSGEIP-KEIGMLKYLTDVILWGNQLSG 260 (1114)
Q Consensus 184 n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~ 260 (1114)
|++.+..|.+|+++++|++|++++|.+++..|.. ++++++|++|+|++|++++..+ ..|+.+++|++|+|++|.+++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 8888777888888888888888888887766654 7788888888888888876544 567788888888888888877
Q ss_pred ccccccccc--cccchhhcccccccCCchhhhcCCCc------cceeeecccccccccCcccccc---cccccccccccc
Q 001253 261 VIPKELGNC--TSLETLALYDNKQVGQLPKELGSIGS------LKYLYIYRNELNGTIPREIGKL---SSALEIDFSENS 329 (1114)
Q Consensus 261 ~~p~~l~~l--~~L~~L~Ls~N~~~~~~p~~~~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~ls~N~ 329 (1114)
..|..+..+ ++|+.|+++.|.+.+..|..++.+.+ |++|++++|.+.+.+|..+... .++..++++.+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 777777766 67777777777777766666555544 6666666666665555544332 233333333222
Q ss_pred CCCCCchhhhcccccceeecccccccCccccccccc--ccCCEEEcccccccccccCccccccceeeeeccCCcccCCCC
Q 001253 330 LIGEIPVELSKILGLELLYLFENKLTGVIPVELTTL--KNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIP 407 (1114)
Q Consensus 330 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 407 (1114)
... ....+.+.......|..+ ++|+.|+|++|.+.+..+..|..+++|+.|++++|++.+..+
T Consensus 243 ~~~---------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 243 MGA---------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp CBC---------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred ccc---------------cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 110 011222322223333332 455555555555555555555555555555555555554444
Q ss_pred CCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhcccc
Q 001253 408 QRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLAN 487 (1114)
Q Consensus 408 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 487 (1114)
..|..+++|++|+|++|++++.. |..+..+++|++|++++|++.+..+..|..+++
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~------------------------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELY------------------------SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCC------------------------SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred HHhcCCCCCCEEECCCCCCCccC------------------------HHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 44555555555555555554444 444444555555555555554444444555555
Q ss_pred ccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccc-cccccccccceEEECc
Q 001253 488 LSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRI-PLEIFSCKMLQRLDLS 566 (1114)
Q Consensus 488 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls 566 (1114)
|++|+|++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|++++|++++.- +..+..+++|+.|+|+
T Consensus 364 L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls 434 (844)
T 3j0a_A 364 LQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434 (844)
T ss_dssp CCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEE
T ss_pred CCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCC
Confidence 55555555555421 12455666666666665 33332 345566666666665321 1123356677777777
Q ss_pred cccccCCCch-hhhhcccCCeeeccCccCC-----CcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhccc
Q 001253 567 WNKFVGALPR-EIGSLFQLELLKLSENELS-----GSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSY 640 (1114)
Q Consensus 567 ~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~ 640 (1114)
+|++++..+. .+..+++|++|+|++|.++ +..+..|.++++|+.|+|++|+|++.+|..|..+++|+ .|+|++
T Consensus 435 ~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~ 513 (844)
T 3j0a_A 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR-GLSLNS 513 (844)
T ss_dssp SCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS-EEEEES
T ss_pred CCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhh-eeECCC
Confidence 7777654332 3445677778888888776 34456788899999999999999988888899999998 799999
Q ss_pred ccccccCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCCCcccccc
Q 001253 641 NNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPSSQTFQN 703 (1114)
Q Consensus 641 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~~~~~~~ 703 (1114)
|+|++..|..+. ++|+.|||++|+|+|.+|..|. +|+.+++++|++.|.++..+...+
T Consensus 514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~f~~~ 571 (844)
T 3j0a_A 514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFINW 571 (844)
T ss_dssp CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCCSHHHH
T ss_pred CCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccHHHHHH
Confidence 999988777776 7899999999999999998865 788999999999999987544443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.3e-58 Score=566.57 Aligned_cols=537 Identities=19% Similarity=0.187 Sum_probs=347.0
Q ss_pred cCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCCCCCCEEEccCCCcccccccccccccccceeccccccccCC
Q 001253 86 TKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGP 165 (1114)
Q Consensus 86 ~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 165 (1114)
++.++. .+|..+.. ++++|||++|.|++..|.+|+++++|++|+|++|.+.+..|..|+++++|++|+|++|++++.
T Consensus 20 ~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 20 ENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96 (606)
T ss_dssp TTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred CCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc
Confidence 333443 34554543 689999999999988899999999999999999999998899999999999999999999988
Q ss_pred CCcccccCcccchhhhcccccCCCCCCCccccccccceeccccccccccCCCCCCCCccceeeccccccCCCCccccccc
Q 001253 166 FPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGML 245 (1114)
Q Consensus 166 ~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 245 (1114)
.|..|+++++|++|++++|.+++..|..++++++|++|++++|.+.+..+..+.++++|++|+|++|++++..|..++.+
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence 89999999999999999999998778999999999999999999997555556669999999999999998888899999
Q ss_pred cccc--EEEecCCcccCccccccccccccchhhcccccccCCchhhhcCCCccceeeecccccccccCcccccccccccc
Q 001253 246 KYLT--DVILWGNQLSGVIPKELGNCTSLETLALYDNKQVGQLPKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEI 323 (1114)
Q Consensus 246 ~~L~--~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 323 (1114)
++|+ .|++++|.+++..|..+.. .+|+.|++++|. .++..+..+.+++...+..+.+.+ +...
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~-----------~~~~ 241 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFED-----------MDDE 241 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTT-----------SCCC
T ss_pred cccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhcc-----------cccc
Confidence 9999 9999999999877766554 689999999986 556666666666555554333221 1111
Q ss_pred ccccccCCCCCchhhhccc--ccceeecccccccCcccccccccccCCEEEcccccccccccCccccccceeeeeccCCc
Q 001253 324 DFSENSLIGEIPVELSKIL--GLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNS 401 (1114)
Q Consensus 324 ~ls~N~l~~~~~~~l~~l~--~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 401 (1114)
+++ +..+..+. +|+.|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.
T Consensus 242 ~i~--------~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 242 DIS--------PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp CCC--------GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC
T ss_pred ccC--------hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCC
Confidence 111 11222222 5666666666666666666666666666666666666 455556666666666666666
Q ss_pred ccCCCCCCCCcCccceEEEeecccccCCCCc-cccccCccceeeeccCCccCCc--CcccccCCcceEEeeccceeeccC
Q 001253 402 LVGGIPQRLGAYSQLWVVDLSDNHLTGKIPR-HICRNTSLIFLNLETNKLTGSI--PTGVTRCKSLVQLRLGGNSFTGSF 478 (1114)
Q Consensus 402 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~ 478 (1114)
+.+..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++.. +..+..+++|++|++++|++.+..
T Consensus 313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 392 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC
T ss_pred cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC
Confidence 6555555555555555555555555544333 2445555555555555555433 444445555555555555555444
Q ss_pred CchhhccccccEeecccccCCCCccc-cccccccCcEEEecCceeccCCCccccCCCCcceeeccccccccccccccccc
Q 001253 479 PSDLCKLANLSTVELDQNQFSGPIPT-EIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSC 557 (1114)
Q Consensus 479 p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 557 (1114)
|..+..+++|++|++++|++++..|. .+.++++|++|++++|.+++..|..+..+++|++|++++|++++...
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------ 466 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI------ 466 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE------
T ss_pred HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc------
Confidence 44455555555555555555443332 24444555555555555544444444444444444444444443110
Q ss_pred ccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhh
Q 001253 558 KMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALN 637 (1114)
Q Consensus 558 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~ 637 (1114)
..+..+..+++|++|++++|++++..|..|+++++|+.|+|++|++++.+|..+..++.| .|+
T Consensus 467 ---------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L--~L~ 529 (606)
T 3t6q_A 467 ---------------QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI--YLN 529 (606)
T ss_dssp ---------------CSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC--EEE
T ss_pred ---------------ccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc--EEE
Confidence 112334444555555555555554444455555555555555555555555555555555 255
Q ss_pred cccccccccCCccccchhhhHhhhccCcccccCCC
Q 001253 638 LSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIP 672 (1114)
Q Consensus 638 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip 672 (1114)
|++|++++.+|..+..+++|+.|+|++|++++..+
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 55555555555555555555555555555555443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.1e-58 Score=567.58 Aligned_cols=562 Identities=19% Similarity=0.160 Sum_probs=409.0
Q ss_pred CCEEEccCCCcccccccccccccccceeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccceeccc
Q 001253 128 LEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQ 207 (1114)
Q Consensus 128 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~ 207 (1114)
.++++.+++.++ .+|..+. ++|++|+|++|++++..+..|+++++|++|++++|++++..|.+|+++++|++|++++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 467888888888 4666554 7888999999998877777888888888888888888877777888888888888888
Q ss_pred cccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCcccC-ccccccccccccchhhcccccccCCc
Q 001253 208 NLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSG-VIPKELGNCTSLETLALYDNKQVGQL 286 (1114)
Q Consensus 208 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~~~~~~ 286 (1114)
|.+++..|..|+++++|++|+|++|++++..+..++.+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 88887778888888888888888888876666778888888888888888775 45777777777888888777777776
Q ss_pred hhhhcCCCccc----eeeecccccccccCccccccccccccccccccCC-CCCchhhhcccccceeecccccccCccccc
Q 001253 287 PKELGSIGSLK----YLYIYRNELNGTIPREIGKLSSALEIDFSENSLI-GEIPVELSKILGLELLYLFENKLTGVIPVE 361 (1114)
Q Consensus 287 p~~~~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 361 (1114)
|..|+.+++|+ +|++++|.+.+..+..+.. .+|++|++++|.+. +..|..+.++++|+.+++..+.+.+..
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--- 245 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--- 245 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC---
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCC---
Confidence 76666665554 6777777776443333333 36777777777665 344555666666666665544433210
Q ss_pred ccccccCCEEEcccccccccccCccccccceeeeec-cCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCcc
Q 001253 362 LTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQL-FDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSL 440 (1114)
Q Consensus 362 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L-~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L 440 (1114)
.+.. +....+..+..+ .++.+.+ ..|.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|
T Consensus 246 -----~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L 309 (606)
T 3vq2_A 246 -----NLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKW 309 (606)
T ss_dssp -----CCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCC
T ss_pred -----cccc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccC
Confidence 0000 001111112222 3455555 55666666665 666777777777777775 344 66666777
Q ss_pred ceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCC--ccccccccccCcEEEec
Q 001253 441 IFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGP--IPTEIGNCNALQRLHLS 518 (1114)
Q Consensus 441 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls 518 (1114)
++|++++|++ +.+| .+ .+++|++|++++|+..+.+ .+..+++|++|++++|++++. +|..+..+++|++|+|+
T Consensus 310 ~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~ 384 (606)
T 3vq2_A 310 QSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384 (606)
T ss_dssp SEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC
T ss_pred CEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC
Confidence 7777777777 4566 34 7777777777777544333 456777777777777777755 36777778888888888
Q ss_pred CceeccCCCccccCCCCcceeeccccccccccc-ccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCC-
Q 001253 519 DNYFTGELPREVGNLSNLVTFNVSSNFLTGRIP-LEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSG- 596 (1114)
Q Consensus 519 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~- 596 (1114)
+|.+++ +|..+..+++|+.|++++|++++..| ..+..+++|+.|++++|++++..|..++.+++|++|++++|++++
T Consensus 385 ~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 385 FNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp SCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence 888774 55777788888888888888876666 567778888888888888887788888888888888888888887
Q ss_pred cccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccc
Q 001253 597 SIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFV 676 (1114)
Q Consensus 597 ~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~ 676 (1114)
.+|..++.+++|++|+|++|++++.+|..+..+++|+ .|+|++|++++.+|..|+++++|+.|||++|+|+ .+|..+.
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~ 541 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ-LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQ 541 (606)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGG
T ss_pred chHHhhccCCCCCEEECCCCcCCccChhhhcccccCC-EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHh
Confidence 4788888889999999999999888888888999998 7999999999998999999999999999999999 6777799
Q ss_pred ccc-ccceEEeccCcccCCCCCccccccccccc---ccCCCCCCCCCC
Q 001253 677 NLS-SLLGCNFSYNNLTGPIPSSQTFQNMSVNS---FSGSKGLCGGPL 720 (1114)
Q Consensus 677 ~l~-~l~~l~ls~N~l~g~ip~~~~~~~~~~~~---~~~n~~lc~~p~ 720 (1114)
.++ +|+.|++++|+|.|.+|..+..+++.... .......|..|.
T Consensus 542 ~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 589 (606)
T 3vq2_A 542 HFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPV 589 (606)
T ss_dssp GSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGGCCCC---
T ss_pred hhcccCcEEEccCCCcccCCccHHHHHHHHcCcccccCCccceeCCCh
Confidence 997 59999999999999999876555654321 112234566554
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.4e-57 Score=556.86 Aligned_cols=533 Identities=20% Similarity=0.192 Sum_probs=365.4
Q ss_pred EeecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCCCCCCEEEccCCCcccccccccccccccceeccccccc
Q 001253 83 LNLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRI 162 (1114)
Q Consensus 83 l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l 162 (1114)
++.++++++ .+|..+. ++|++|+|++|++++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|++
T Consensus 16 ~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 16 YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp EECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 455555555 3455444 7899999999999988888999999999999999999988899999999999999999999
Q ss_pred cCCCCcccccCcccchhhhcccccCCCCCCCccccccccceecccccccc-ccCCCCCCCCccceeeccccccCCCCccc
Q 001253 163 SGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQNLISG-SLPSEIGGCESLQYLGLAQNQLSGEIPKE 241 (1114)
Q Consensus 163 ~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 241 (1114)
++..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+.+ .+|..++++++|++|+|++|++++..|..
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 98889999999999999999999998887899999999999999999986 67999999999999999999999888888
Q ss_pred cccccccc----EEEecCCcccCccccccccccccchhhccccccc-CCchhhhcCCCccceeeecccccccccCccccc
Q 001253 242 IGMLKYLT----DVILWGNQLSGVIPKELGNCTSLETLALYDNKQV-GQLPKELGSIGSLKYLYIYRNELNGTIPREIGK 316 (1114)
Q Consensus 242 l~~l~~L~----~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 316 (1114)
++.+++|+ +|++++|.+++..+..+... +|++|++++|.+. +..|..+.++++|+.+++..+.+.+...
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~----- 246 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN----- 246 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC-----
T ss_pred hhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc-----
Confidence 88888775 79999999996655555544 8999999999876 4577888999999999887766542110
Q ss_pred cccccccccccccCCCCCchhhhcccccceeec-ccccccCcccccccccccCCEEEcccccccccccCccccccceeee
Q 001253 317 LSSALEIDFSENSLIGEIPVELSKILGLELLYL-FENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIML 395 (1114)
Q Consensus 317 l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L-~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 395 (1114)
+..+ ....+..+..+ .++.+++ ..|.+.+..|. +..+++|+.|++++|.+.. +| .+..+++|++|
T Consensus 247 ---l~~~-------~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L 312 (606)
T 3vq2_A 247 ---LEIF-------EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSL 312 (606)
T ss_dssp ---CSCC-------CGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEE
T ss_pred ---cccc-------ChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEE
Confidence 0000 00011111111 2344444 44455554444 5555666666666666542 33 55555566666
Q ss_pred eccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCC--cCcccccCCcceEEeeccce
Q 001253 396 QLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGS--IPTGVTRCKSLVQLRLGGNS 473 (1114)
Q Consensus 396 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~ 473 (1114)
++++|.+ +.+| .+ .+++|++|++++|+..+.. .+..+++|++|++++|++++. .|..+..+++|++|++++|.
T Consensus 313 ~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 313 SIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp EEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred EcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence 6666666 4444 23 5566666666666433222 344556666666666666543 25555666666666666666
Q ss_pred eeccCCchhhccccccEeecccccCCCCcc-ccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccc-ccc
Q 001253 474 FTGSFPSDLCKLANLSTVELDQNQFSGPIP-TEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTG-RIP 551 (1114)
Q Consensus 474 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p 551 (1114)
+++ +|..+..+++|++|++++|++++..| ..+.++++|++|++++|++++..|..+.++++|++|++++|.+++ .+|
T Consensus 388 l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 466 (606)
T 3vq2_A 388 AII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466 (606)
T ss_dssp EEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH
Confidence 653 44556666666666666666665555 456666666666666666666666666666666666666666665 245
Q ss_pred ccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcc-
Q 001253 552 LEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLS- 630 (1114)
Q Consensus 552 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~- 630 (1114)
..+..+++|+.|+|++|++++..|..++.+++|++|+|++|++++..|..+.++++|+.|++++|+|+ .+|..+..+.
T Consensus 467 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~ 545 (606)
T 3vq2_A 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPK 545 (606)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCT
T ss_pred HhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcc
Confidence 55666666666666666666666666666666666666666666666666666666666666666666 4555566554
Q ss_pred hhhHHhhccccccccc
Q 001253 631 SLQIALNLSYNNLSGL 646 (1114)
Q Consensus 631 ~L~~~L~Ls~N~l~~~ 646 (1114)
+|+ .|++++|.+.+.
T Consensus 546 ~L~-~l~l~~N~~~c~ 560 (606)
T 3vq2_A 546 SLA-FFNLTNNSVACI 560 (606)
T ss_dssp TCC-EEECCSCCCCCS
T ss_pred cCc-EEEccCCCcccC
Confidence 355 566666666654
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.6e-58 Score=563.82 Aligned_cols=502 Identities=21% Similarity=0.251 Sum_probs=376.7
Q ss_pred chHHHHHHhHhhccCC-CCC-------CCCCCCCCCCCCcc---ceEEEecCCCccEEEEEeecCCCcCcccCCCCCCCC
Q 001253 34 IEGQILLLIKSKLVDN-SNY-------LGNWNPNDSTPCGW---IGVNCTTNDFGAVVFSLNLTKMNLSGYLSPNIGGLV 102 (1114)
Q Consensus 34 ~~~~~ll~~k~~~~~~-~~~-------~~~W~~~~~~~C~w---~gv~C~~~~~~~~v~~l~l~~~~l~g~~~~~l~~l~ 102 (1114)
.|++||.+||.++.++ +.. ..+|+.+ .+||.| .||+|+.. ++|++|+|++++++|.+|+++++|+
T Consensus 30 ~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~~~~GV~C~~~---~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 30 KDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSN---GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTTCCTTEEECTT---CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred HHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCcccccCCCCeEEcCC---CCEEEEEecCcccCCcCChHHhcCc
Confidence 5899999999998544 222 3489864 679999 99999753 6799999999999999999999999
Q ss_pred ccCEEEecCCcccCCCCcccCCCCCCCEEEccCCCcccccccccccccccceeccccccccCCCCccccc-Ccccchhhh
Q 001253 103 HLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGK-LSALSQLVA 181 (1114)
Q Consensus 103 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~l 181 (1114)
+|++|||++|++.. .+..++.. .+...+|... +.+|+ +++++|.+.+.+|..+.. +..+..+++
T Consensus 106 ~L~~L~Ls~N~~~~-~~~~~~~~-----------~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l 170 (636)
T 4eco_A 106 ELEVLALGSHGEKV-NERLFGPK-----------GISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDP 170 (636)
T ss_dssp TCCEEESCCGGGGG-TCCSBSTT-----------SBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCT
T ss_pred cceEEECcCCcccc-CCcccccc-----------ccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCc
Confidence 99999999997631 11111110 0011234333 56666 777777777777766663 344444544
Q ss_pred cccccCCCCCCCccccccccceecc--ccccccccCCCCCCCCccceeeccccccCCC-----------------Ccccc
Q 001253 182 YSNNISGSLPPTLGNLKRLKSFRAG--QNLISGSLPSEIGGCESLQYLGLAQNQLSGE-----------------IPKEI 242 (1114)
Q Consensus 182 ~~n~i~~~~p~~l~~l~~L~~L~l~--~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-----------------~p~~l 242 (1114)
....+.. .....++.+.+. .|.+++ +|.+++++++|++|+|++|++++. +|..+
T Consensus 171 ~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l 243 (636)
T 4eco_A 171 QQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243 (636)
T ss_dssp TSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred ccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence 4333321 112233333333 467776 777777777777777777777764 77777
Q ss_pred c--ccccccEEEecCCcccCccccccccccccchhhccccc-ccC-CchhhhcCC------CccceeeecccccccccCc
Q 001253 243 G--MLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNK-QVG-QLPKELGSI------GSLKYLYIYRNELNGTIPR 312 (1114)
Q Consensus 243 ~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-~~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~ 312 (1114)
+ .+++|++|+|++|++.+.+|..++++++|++|++++|+ +.+ .+|..++.+ ++|++|++++|+++ .+|.
T Consensus 244 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence 7 78888888888888887888888888888888888887 776 777777766 88888888888888 7887
Q ss_pred --cccccccccccccccccCCCCCchhhhcccccceeecccccccCccccccccccc-CCEEEcccccccccccCccccc
Q 001253 313 --EIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELTTLKN-LTKLDLSINSLTGTIPLGFQYL 389 (1114)
Q Consensus 313 --~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l 389 (1114)
.++.+++|++|++++|++.|.+| .+..+++|+.|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..+
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~ 399 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAK 399 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTT
T ss_pred hhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhc
Confidence 78888888888888888887888 8888888888899888888 66777888888 999999999998 677777765
Q ss_pred c--ceeeeeccCCcccCCCCCCCC-------cCccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCccc-c
Q 001253 390 T--NLIMLQLFDNSLVGGIPQRLG-------AYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGV-T 459 (1114)
Q Consensus 390 ~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~-~ 459 (1114)
+ +|++|++++|.+.+..|..+. .+++|++|+|++|+++...+..+..+++|++|+|++|+++ .+|..+ .
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~ 478 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLK 478 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSE
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhc
Confidence 5 899999999999988888888 7789999999999999544445556899999999999999 555543 3
Q ss_pred cC-------CcceEEeeccceeeccCCchhh--ccccccEeecccccCCCCccccccccccCcEEEecC------ceecc
Q 001253 460 RC-------KSLVQLRLGGNSFTGSFPSDLC--KLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSD------NYFTG 524 (1114)
Q Consensus 460 ~l-------~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~ 524 (1114)
.. ++|++|+|++|+++ .+|..+. .+++|++|+|++|+|++ +|..+.++++|++|+|++ |++.+
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~ 556 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred cccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc
Confidence 33 39999999999999 7888887 99999999999999997 899999999999999955 55555
Q ss_pred CCCccccCCCCcceeecccccccccccccccccccceEEECcccccc
Q 001253 525 ELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFV 571 (1114)
Q Consensus 525 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 571 (1114)
.+|..+.++++|+.|+|++|++ +.+|..+. ++|+.|+|++|++.
T Consensus 557 ~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 557 EWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred cChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 6666666666666666666666 35555544 45666666666554
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.9e-57 Score=563.43 Aligned_cols=505 Identities=20% Similarity=0.176 Sum_probs=351.0
Q ss_pred CCCcchHHHHHHhHhhccCCCCCCCCCCCCC----CCC--Ccc------------ceEEEecCCCccEEEEEeecCCCcC
Q 001253 30 GLVNIEGQILLLIKSKLVDNSNYLGNWNPND----STP--CGW------------IGVNCTTNDFGAVVFSLNLTKMNLS 91 (1114)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~----~~~--C~w------------~gv~C~~~~~~~~v~~l~l~~~~l~ 91 (1114)
++..+|++||++||+++.|| +|+.++ .+| |.| .||+|+. .++|+.|+|+++++.
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~---~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN---NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT---TSCEEEEECTTTCCE
T ss_pred ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC---CCCEEEEECccCCCC
Confidence 44457999999999999776 897654 345 999 9999976 368999999999999
Q ss_pred cccCCCCCCCCccCEEEe-cCCcccCCCCcccCCCC-CCCEE--------------E-ccCCCcccc-----------cc
Q 001253 92 GYLSPNIGGLVHLTALDL-SFNQLSRNIPKEIGNCS-SLEVL--------------N-LNNNRLEAH-----------IP 143 (1114)
Q Consensus 92 g~~~~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~l~-~L~~L--------------~-L~~n~l~~~-----------~p 143 (1114)
|.+|+++++|++|++||| ++|.++|..|....... .+... + .....+.+. .+
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 99988877543211110 00000 0 000000000 00
Q ss_pred cccccccccceecccc--ccccCCCCcccccCcccchhhhcccccCC-----------------CCCCCcc--ccccccc
Q 001253 144 KELGNLSSLTILNIYN--NRISGPFPKEIGKLSALSQLVAYSNNISG-----------------SLPPTLG--NLKRLKS 202 (1114)
Q Consensus 144 ~~l~~l~~L~~L~L~~--N~l~~~~p~~~~~l~~L~~L~l~~n~i~~-----------------~~p~~l~--~l~~L~~ 202 (1114)
-.......++.+.++. |++++ +|..|+++++|++|++++|++++ .+|+.++ ++++|++
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 0011122333333333 55554 55555555555555555555555 3777766 7777777
Q ss_pred eeccccccccccCCCCCCCCccceeeccccc-cCC-CCcccccccc-------cccEEEecCCcccCcccc--ccccccc
Q 001253 203 FRAGQNLISGSLPSEIGGCESLQYLGLAQNQ-LSG-EIPKEIGMLK-------YLTDVILWGNQLSGVIPK--ELGNCTS 271 (1114)
Q Consensus 203 L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l~-------~L~~L~L~~N~l~~~~p~--~l~~l~~ 271 (1114)
|++++|.+.+.+|..|+++++|++|+|++|+ ++| .+|..++.++ +|++|+|++|+++ .+|. .++++++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 7777777777777777777777777777776 776 6776666655 7777777777777 6666 7777777
Q ss_pred cchhhcccccccCCchhhhcCCCccceeeecccccccccCcccccccc-ccccccccccCCCCCchhhhcccc--cceee
Q 001253 272 LETLALYDNKQVGQLPKELGSIGSLKYLYIYRNELNGTIPREIGKLSS-ALEIDFSENSLIGEIPVELSKILG--LELLY 348 (1114)
Q Consensus 272 L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~ls~N~l~~~~~~~l~~l~~--L~~L~ 348 (1114)
|+.|+|++|.+. .+| .|+.+++|++|+|++|++. .+|..+..+++ |++|++++|.+. .+|..+..+.. |+.|+
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence 777777777766 666 6777777777777777777 67777777777 777777777776 56666655543 77777
Q ss_pred cccccccCccccc---cc--ccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCC-------cCccc
Q 001253 349 LFENKLTGVIPVE---LT--TLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLG-------AYSQL 416 (1114)
Q Consensus 349 L~~N~l~~~~~~~---~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------~l~~L 416 (1114)
|++|++++.+|.. +. .+++|+.|+|++|.++...+..+..+++|+.|+|++|++....+..+. ++++|
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGC
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCc
Confidence 7777777655432 22 234788888888888844333445778888888888888733333333 23489
Q ss_pred eEEEeecccccCCCCcccc--ccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecc
Q 001253 417 WVVDLSDNHLTGKIPRHIC--RNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELD 494 (1114)
Q Consensus 417 ~~L~Ls~N~l~~~~~~~~~--~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 494 (1114)
++|+|++|+|+ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++|+ +++
T Consensus 731 ~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ls 790 (876)
T 4ecn_A 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------DAE 790 (876)
T ss_dssp CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------CTT
T ss_pred cEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------------Ccc
Confidence 99999999999 6788877 88999999999999997 78888899999999998876 566
Q ss_pred cccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECcccccc
Q 001253 495 QNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFV 571 (1114)
Q Consensus 495 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 571 (1114)
+|++.+.+|..|.++++|+.|+|++|+| +.+|..+. ++|+.|+|++|++....+..+.....+..+.|.+|++.
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred cccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 7777777777777777777777777777 46666655 57777777777776545555555555666667777654
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-54 Score=554.75 Aligned_cols=533 Identities=21% Similarity=0.201 Sum_probs=404.7
Q ss_pred eeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccceecccccccccc-CCCCCCCCccceeecccc
Q 001253 154 ILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQNLISGSL-PSEIGGCESLQYLGLAQN 232 (1114)
Q Consensus 154 ~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~Ls~N 232 (1114)
..+.+++.++ .+|. -.++|++|++++|.+++..|..|.++++|++|++++|...+.+ |.+|+++++|++|+|++|
T Consensus 8 ~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 4566666676 4554 3466777777777777666777777777777777777544444 666777777777777777
Q ss_pred ccCCCCcccccccccccEEEecCCcccCccccc--cccccccchhhcccccccCCch-hhhcCCCccceeeecccccccc
Q 001253 233 QLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKE--LGNCTSLETLALYDNKQVGQLP-KELGSIGSLKYLYIYRNELNGT 309 (1114)
Q Consensus 233 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~Ls~N~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~ 309 (1114)
.+++..|..|+.+++|++|+|++|.+++.+|.. ++++++|++|+|++|.+.+..+ ..|+++++|++|+|++|.+.+.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 777666677777777777777777776655544 6667777777777776665543 4566677777777777766666
Q ss_pred cCcccccc--ccccccccccccCCCCCchhhhcccc------cceeecccccccCccccccccc---ccCCEEEcccccc
Q 001253 310 IPREIGKL--SSALEIDFSENSLIGEIPVELSKILG------LELLYLFENKLTGVIPVELTTL---KNLTKLDLSINSL 378 (1114)
Q Consensus 310 ~p~~l~~l--~~L~~L~ls~N~l~~~~~~~l~~l~~------L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l 378 (1114)
.|..+..+ ++|+.|++++|.+.+..|..+..+.+ |+.|++++|.+++..+..+... .+++.|+++.+.+
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 66666655 56666666666666655555444433 5555555555554444443322 3444555443322
Q ss_pred cccccCccccccceeeeeccCCcccCCCCCCCCcC--ccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCc
Q 001253 379 TGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAY--SQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPT 456 (1114)
Q Consensus 379 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~ 456 (1114)
.. .+..+.+.+.....|..+ ++|+.|+|++|.+.+..+..|..+++|+.|+|++|++++..|.
T Consensus 244 ~~---------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 244 GA---------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp BC---------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred cc---------------cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence 21 112334444444555554 7899999999999988899999999999999999999988899
Q ss_pred ccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCc
Q 001253 457 GVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNL 536 (1114)
Q Consensus 457 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 536 (1114)
.|..+++|++|+|++|++++..|..|..+++|++|++++|++++..+..|.++++|++|+|++|.+++. ..+++|
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L 383 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSI 383 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSC
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCc
Confidence 999999999999999999988899999999999999999999988888999999999999999999853 238899
Q ss_pred ceeecccccccccccccccccccceEEECccccccCCC-chhhhhcccCCeeeccCccCCCcccc-cccccccccccccC
Q 001253 537 VTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGAL-PREIGSLFQLELLKLSENELSGSIPV-QIGNLSRLTELQMG 614 (1114)
Q Consensus 537 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~ls 614 (1114)
+.|++++|+++ .+|.. ..+++.|++++|++++.. +..++.+++|++|+|++|++++..+. .+..+++|+.|+|+
T Consensus 384 ~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 384 PDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp SEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred chhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCC
Confidence 99999999998 66654 567999999999999653 33466899999999999999965543 45678999999999
Q ss_pred CCcCC-----CCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccC
Q 001253 615 GNSFS-----GGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYN 689 (1114)
Q Consensus 615 ~N~l~-----~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N 689 (1114)
+|.++ +..|..|..+++|+ .|+|++|+|++.+|..|..+++|+.|||++|+|++.+|..+. ++|+.||+++|
T Consensus 460 ~N~l~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 460 ENMLQLAWETELCWDVFEGLSHLQ-VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp SCCCSSSCCSCCCSSCSSCBCCEE-CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred CCccccccccccchhhhcCccccc-EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence 99997 55567789999999 799999999999999999999999999999999998888876 89999999999
Q ss_pred cccCCCCCcccccccccccccCCCCCCCCC
Q 001253 690 NLTGPIPSSQTFQNMSVNSFSGSKGLCGGP 719 (1114)
Q Consensus 690 ~l~g~ip~~~~~~~~~~~~~~~n~~lc~~p 719 (1114)
+++|.+|. .|..+....+.+|+-.|+.+
T Consensus 537 ~l~~~~~~--~~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 537 QLLAPNPD--VFVSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCCCCSC--CCSSCCEEEEEEECCCCSSS
T ss_pred cCCCCChh--HhCCcCEEEecCCCcccccc
Confidence 99999885 35566666677888777544
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-52 Score=512.60 Aligned_cols=535 Identities=19% Similarity=0.174 Sum_probs=378.1
Q ss_pred ceeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccceeccccccccccCCCCCCCCccceeecccc
Q 001253 153 TILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQNLISGSLPSEIGGCESLQYLGLAQN 232 (1114)
Q Consensus 153 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N 232 (1114)
+..+.++..++ .+|..+. +++++|++++|++++..+.+|.++++|++|++++|.+++..|..|+++++|++|+|++|
T Consensus 10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 44556665665 4555443 35666777777776666666666777777777777666666666666667777777777
Q ss_pred ccCCCCcccccccccccEEEecCCcccCccccccccccccchhhcccccccC-CchhhhcCCCccceeeecccccccccC
Q 001253 233 QLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQVG-QLPKELGSIGSLKYLYIYRNELNGTIP 311 (1114)
Q Consensus 233 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p 311 (1114)
++++..|..|+.+++|++|++++|++++..+..++++++|++|++++|.+.+ .+|..|+++++|++|++++|++.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 6665555666666666666666666665544456666666666666666555 356666666666666666666665555
Q ss_pred ccccccccc----cccccccccCCCCCchhhhcccccceeecccccccC-cccccccccccCCEEEcccccccccccCcc
Q 001253 312 REIGKLSSA----LEIDFSENSLIGEIPVELSKILGLELLYLFENKLTG-VIPVELTTLKNLTKLDLSINSLTGTIPLGF 386 (1114)
Q Consensus 312 ~~l~~l~~L----~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 386 (1114)
..++.+.+| ++|++++|.+.+..+..+... +|+.|++++|.... ..+..+..+++++.+++..+.+..
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~------ 239 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN------ 239 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC------
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC------
Confidence 555555555 455555555555444444433 45555555543321 123333444444444433222210
Q ss_pred ccccceeeeeccCCcccCCCCCCCCcCc--cceEEEeecc-cccCCCCccccccCccceeeeccCCccCCcCcccccCCc
Q 001253 387 QYLTNLIMLQLFDNSLVGGIPQRLGAYS--QLWVVDLSDN-HLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKS 463 (1114)
Q Consensus 387 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~Ls~N-~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~ 463 (1114)
.+.+.......+..+. .++.+++++| .+.+..|..+..+++|+.|++++|.++ .+|..+..+ +
T Consensus 240 ------------~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~ 305 (570)
T 2z63_A 240 ------------EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-G 305 (570)
T ss_dssp ------------CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-C
T ss_pred ------------chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-C
Confidence 0011111222233332 3566777777 777777788888888888888888887 577777777 8
Q ss_pred ceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCC--CccccCCCCcceeec
Q 001253 464 LVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGEL--PREVGNLSNLVTFNV 541 (1114)
Q Consensus 464 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L 541 (1114)
|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. |..+.++++|++|++
T Consensus 306 L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 380 (570)
T 2z63_A 306 WQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380 (570)
T ss_dssp CSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEEC
T ss_pred ccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEEC
Confidence 888888888887 5555 4678888888888888766655 67888999999999888654 677888889999999
Q ss_pred ccccccccccccccccccceEEECccccccCCCc-hhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCC-
Q 001253 542 SSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALP-REIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFS- 619 (1114)
Q Consensus 542 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~- 619 (1114)
++|.+++ +|..+..+++|+.|++++|++++..| ..+..+++|++|++++|.+.+..|..+.++++|++|++++|+++
T Consensus 381 ~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 459 (570)
T 2z63_A 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459 (570)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc
Confidence 9999884 44458888999999999999987765 56888999999999999999888889999999999999999997
Q ss_pred CCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCCCcc
Q 001253 620 GGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPSSQ 699 (1114)
Q Consensus 620 ~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~~~ 699 (1114)
+.+|..+..+++|+ .|+|++|++++..|..|+++++|++|+|++|++++.+|..|.++++|+.|++++|+++|.+|..+
T Consensus 460 ~~~p~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 460 NFLPDIFTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp GEECSCCTTCTTCC-EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred ccchhhhhcccCCC-EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 57889999999998 79999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cc-cccccc--cccCCCCCCCCC
Q 001253 700 TF-QNMSVN--SFSGSKGLCGGP 719 (1114)
Q Consensus 700 ~~-~~~~~~--~~~~n~~lc~~p 719 (1114)
.+ .|+... ...+.. .|+.|
T Consensus 539 ~~~~wl~~~~~~~~~~~-~C~~~ 560 (570)
T 2z63_A 539 YLSRWLNKNSQKEQGSA-KCSGS 560 (570)
T ss_dssp HHHHHHHHTGGGEESCC-BBTTT
T ss_pred HHHHHHHhccccCCCch-hhCCC
Confidence 66 555432 233333 67665
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-51 Score=501.63 Aligned_cols=512 Identities=20% Similarity=0.201 Sum_probs=308.6
Q ss_pred eecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCCCCCCEEEccCCCcccccccccccccccceecccccccc
Q 001253 84 NLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRIS 163 (1114)
Q Consensus 84 ~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 163 (1114)
+.++.+++. +|..+. +++++|||++|++++..+.+|+.+++|++|+|++|.+++..|..|+++++|++|+|++|+++
T Consensus 13 ~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 13 QCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp ECCSSCCSS-CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EeCCCCccc-cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence 334444442 444432 46899999999998888888999999999999999999877888999999999999999998
Q ss_pred CCCCcccccCcccchhhhcccccCCCCCCCccccccccceecccccccc-ccCCCCCCCCccceeeccccccCCCCcccc
Q 001253 164 GPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQNLISG-SLPSEIGGCESLQYLGLAQNQLSGEIPKEI 242 (1114)
Q Consensus 164 ~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 242 (1114)
+..|..|+++++|++|++++|++++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|++++..|..+
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~ 169 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc
Confidence 7777888899999999999988886666678888888888888888876 468888888888888888888887677778
Q ss_pred cccccc----cEEEecCCcccCccccccccccccchhhcccccccC-CchhhhcCCCccceeeecccccccccCcccccc
Q 001253 243 GMLKYL----TDVILWGNQLSGVIPKELGNCTSLETLALYDNKQVG-QLPKELGSIGSLKYLYIYRNELNGTIPREIGKL 317 (1114)
Q Consensus 243 ~~l~~L----~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 317 (1114)
+.+++| +.|++++|.+++..|..+..+ +|+.|++++|.... .++..+..+++++.+.+....+.. .
T Consensus 170 ~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~ 240 (570)
T 2z63_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------E 240 (570)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------C
T ss_pred cchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC--------c
Confidence 888777 788888888887777666655 78888888775332 355667777777776665443321 0
Q ss_pred ccccccccccccCCCCCchhhhccc--ccceeecccc-cccCcccccccccccCCEEEcccccccccccCccccccceee
Q 001253 318 SSALEIDFSENSLIGEIPVELSKIL--GLELLYLFEN-KLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIM 394 (1114)
Q Consensus 318 ~~L~~L~ls~N~l~~~~~~~l~~l~--~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 394 (1114)
..+..+ . ...+..+. .++.+++.++ .+.+..+..+..+++|+.|++++|.++ .+|..+..+ +|++
T Consensus 241 ~~l~~~--~--------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~ 308 (570)
T 2z63_A 241 GNLEKF--D--------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQH 308 (570)
T ss_dssp SSCEEC--C--------TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSE
T ss_pred hhhhhc--c--------hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccE
Confidence 111110 0 11111111 2444555555 455555555556666666666666655 344444444 5555
Q ss_pred eeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeecccee
Q 001253 395 LQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSF 474 (1114)
Q Consensus 395 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 474 (1114)
|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++..
T Consensus 309 L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~-------------------- 363 (570)
T 2z63_A 309 LELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG-------------------- 363 (570)
T ss_dssp EEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEE--------------------
T ss_pred EeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccc--------------------
Confidence 555555554 2222 2344555555555555443332 33444555555555444322
Q ss_pred eccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCC-ccccCCCCcceeeccccccccccccc
Q 001253 475 TGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELP-REVGNLSNLVTFNVSSNFLTGRIPLE 553 (1114)
Q Consensus 475 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~ 553 (1114)
..|..+..+++|++|++++|++++..+. +..+++|++|++++|.+++..| ..+.++++|++|++++|.+++..|..
T Consensus 364 --~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 440 (570)
T 2z63_A 364 --CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440 (570)
T ss_dssp --EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred --cccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh
Confidence 0134444444455555555544432222 4445555555555555544333 33444555555555555554444444
Q ss_pred ccccccceEEECcccccc-CCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchh
Q 001253 554 IFSCKMLQRLDLSWNKFV-GALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSL 632 (1114)
Q Consensus 554 ~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 632 (1114)
+..+++|+.|+|++|+++ +.+|..+..+++|++|++++|++++..|..+.++++|++|++++|++++.+|..+..+++|
T Consensus 441 ~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 444555555555555554 3344455555555555555555554445555555555555555555554444445555555
Q ss_pred hHHhhcccccccccCC
Q 001253 633 QIALNLSYNNLSGLIP 648 (1114)
Q Consensus 633 ~~~L~Ls~N~l~~~~p 648 (1114)
+ .|++++|.+++..|
T Consensus 521 ~-~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 521 Q-KIWLHTNPWDCSCP 535 (570)
T ss_dssp C-EEECCSSCBCCCTT
T ss_pred c-EEEecCCcccCCCc
Confidence 5 45555555555443
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.4e-51 Score=502.53 Aligned_cols=468 Identities=21% Similarity=0.274 Sum_probs=392.4
Q ss_pred CccCEEEecCCcccCCCCcccCCCCCCCEEEccCCCcccccccccccccccceeccccccccCCCCcccccCcccchhhh
Q 001253 102 VHLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVA 181 (1114)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l 181 (1114)
.+++.|+|++|+++|.+|++|++|++|++|+|++|.+.. .+..++... +...+|... +..|+ +++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~-~~~~~~~~~-----------~~~~~~~~~--~~~l~-l~l 145 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV-NERLFGPKG-----------ISANMSDEQ--KQKMR-MHY 145 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGG-TCCSBSTTS-----------BCTTCCHHH--HHHHH-THH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCcccc-CCccccccc-----------cccCchHHH--HHHHH-hhH
Confidence 467899999999988899999999999999998887642 111122110 112455555 67787 999
Q ss_pred cccccCCCCCCCccc-cccccceeccccccccccCCCCCCCCccceeecc--ccccCCCCcccccccccccEEEecCCcc
Q 001253 182 YSNNISGSLPPTLGN-LKRLKSFRAGQNLISGSLPSEIGGCESLQYLGLA--QNQLSGEIPKEIGMLKYLTDVILWGNQL 258 (1114)
Q Consensus 182 ~~n~i~~~~p~~l~~-l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls--~N~l~~~~p~~l~~l~~L~~L~L~~N~l 258 (1114)
++|.+.+.+|..+.. +.++..+++....+.. .....++.+.+. .|+++| +|..|+.+++|++|+|++|.+
T Consensus 146 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l 218 (636)
T 4eco_A 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218 (636)
T ss_dssp HHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCC
T ss_pred HHhhhccCchhhHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcc
Confidence 999999999988874 4455555555444431 222344445554 689998 999999999999999999999
Q ss_pred cCc-----------------cccccc--cccccchhhcccccccCCchhhhcCCCccceeeecccc-ccc-ccCcccccc
Q 001253 259 SGV-----------------IPKELG--NCTSLETLALYDNKQVGQLPKELGSIGSLKYLYIYRNE-LNG-TIPREIGKL 317 (1114)
Q Consensus 259 ~~~-----------------~p~~l~--~l~~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l 317 (1114)
++. +|..++ ++++|++|+|++|.+.+.+|..|+++++|++|+|++|+ +++ .+|..++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L 298 (636)
T 4eco_A 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298 (636)
T ss_dssp CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhh
Confidence 986 899999 99999999999999999999999999999999999998 998 899999887
Q ss_pred ------ccccccccccccCCCCCch--hhhcccccceeecccccccCcccccccccccCCEEEcccccccccccCccccc
Q 001253 318 ------SSALEIDFSENSLIGEIPV--ELSKILGLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYL 389 (1114)
Q Consensus 318 ------~~L~~L~ls~N~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 389 (1114)
++|++|++++|+++ .+|. .+.++++|+.|++++|+++|.+| .|..+++|++|+|++|+++ .+|..|..+
T Consensus 299 ~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 375 (636)
T 4eco_A 299 ADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGF 375 (636)
T ss_dssp HHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEE
T ss_pred hccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhh
Confidence 99999999999999 8888 89999999999999999998888 9999999999999999999 888899999
Q ss_pred cc-eeeeeccCCcccCCCCCCCCcCc--cceEEEeecccccCCCCcccc-------ccCccceeeeccCCccCCcCcccc
Q 001253 390 TN-LIMLQLFDNSLVGGIPQRLGAYS--QLWVVDLSDNHLTGKIPRHIC-------RNTSLIFLNLETNKLTGSIPTGVT 459 (1114)
Q Consensus 390 ~~-L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~-------~~~~L~~L~Ls~N~l~~~~p~~~~ 459 (1114)
++ |++|++++|.+. .+|..+...+ +|++|++++|++++.+|..+. .+++|++|++++|++++..+..+.
T Consensus 376 ~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 454 (636)
T 4eco_A 376 TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454 (636)
T ss_dssp CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH
T ss_pred cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc
Confidence 99 999999999999 7788887755 999999999999999999888 888999999999999954444456
Q ss_pred cCCcceEEeeccceeeccCCchhhc-c-------ccccEeecccccCCCCcccccc--ccccCcEEEecCceeccCCCcc
Q 001253 460 RCKSLVQLRLGGNSFTGSFPSDLCK-L-------ANLSTVELDQNQFSGPIPTEIG--NCNALQRLHLSDNYFTGELPRE 529 (1114)
Q Consensus 460 ~l~~L~~L~L~~N~l~~~~p~~~~~-l-------~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~ 529 (1114)
.+++|++|+|++|+++ .+|..+.. . ++|++|+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..
T Consensus 455 ~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~ 531 (636)
T 4eco_A 455 TGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531 (636)
T ss_dssp TTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred cCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh
Confidence 6999999999999999 66655433 3 29999999999999 7888887 99999999999999997 8999
Q ss_pred ccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCccccccccccccc
Q 001253 530 VGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLT 609 (1114)
Q Consensus 530 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 609 (1114)
+.++++|+.|+|++|+ ++++|++.+.+|..++.+++|++|+|++|++ +.+|..+. ++|+
T Consensus 532 ~~~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~ 590 (636)
T 4eco_A 532 PLNSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNIS 590 (636)
T ss_dssp GGGCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCC
T ss_pred hhcCCCCCEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCC
Confidence 9999999999998876 5667777777777777777788888888887 46776655 6788
Q ss_pred ccccCCCcCC
Q 001253 610 ELQMGGNSFS 619 (1114)
Q Consensus 610 ~L~ls~N~l~ 619 (1114)
.|||++|++.
T Consensus 591 ~L~Ls~N~l~ 600 (636)
T 4eco_A 591 VLDIKDNPNI 600 (636)
T ss_dssp EEECCSCTTC
T ss_pred EEECcCCCCc
Confidence 8888888665
No 16
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=9.7e-51 Score=446.87 Aligned_cols=266 Identities=27% Similarity=0.398 Sum_probs=211.4
Q ss_pred HHHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceE
Q 001253 805 VVATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 805 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 884 (1114)
++..++|++.++||+|+||+||+|+++. .||||+++.... .....+.|.+|+.++++++|||||+++|++.+ +..|
T Consensus 32 ei~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~-~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~ 107 (307)
T 3omv_A 32 EIEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDP-TPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLA 107 (307)
T ss_dssp BCCTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCE
T ss_pred EEcHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEE
Confidence 3455788899999999999999999763 699999875443 34456789999999999999999999998864 5689
Q ss_pred EEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCC
Q 001253 885 LMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDM 964 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~ 964 (1114)
+|||||++|+|.++++.....+++.++..|+.|||+||+|||++ +||||||||+|||+++++.+||+|||+|+....
T Consensus 108 iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~ 184 (307)
T 3omv_A 108 IVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSR 184 (307)
T ss_dssp EEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC---
T ss_pred EEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceeccc
Confidence 99999999999999987777899999999999999999999998 999999999999999999999999999987543
Q ss_pred CC-CCccccccccccccCcccccc---CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 965 PQ-SKSMSAIAGSYGYIAPEYAYT---MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 965 ~~-~~~~~~~~g~~~y~aPE~~~~---~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
.. .......+||+.|||||++.+ .+|+.++|||||||++|||+||+.||...... ..+...+..+..
T Consensus 185 ~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~----~~~~~~~~~~~~----- 255 (307)
T 3omv_A 185 WSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR----DQIIFMVGRGYA----- 255 (307)
T ss_dssp ---------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH----HHHHHHHHTTCC-----
T ss_pred CCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChH----HHHHHHHhcCCC-----
Confidence 22 233456789999999999864 45899999999999999999999999754432 222222222111
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
.+.. ...+......+.+++.+||+.||++||||+||++.|+.++..
T Consensus 256 ~p~~---~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~ 301 (307)
T 3omv_A 256 SPDL---SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS 301 (307)
T ss_dssp CCCS---TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred CCCc---ccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcc
Confidence 1111 111222345688999999999999999999999999988643
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.2e-50 Score=490.95 Aligned_cols=492 Identities=19% Similarity=0.211 Sum_probs=351.0
Q ss_pred CCccceEEEecCCCccEEEEEeecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCCCCCCEEEccCCCccccc
Q 001253 63 PCGWIGVNCTTNDFGAVVFSLNLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHI 142 (1114)
Q Consensus 63 ~C~w~gv~C~~~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 142 (1114)
.|.|.|| |+.. +++++ .+|+.+. ++|++|+|++|++++..|.+|+.+++|++|+|++|.+++..
T Consensus 3 ~C~~~~~-c~~~------------~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 66 (549)
T 2z81_A 3 SCDASGV-CDGR------------SRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66 (549)
T ss_dssp EECTTSE-EECT------------TSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEEC
T ss_pred cCCCCce-EECC------------CCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccC
Confidence 4999999 9653 23344 4566554 78999999999999888899999999999999999999888
Q ss_pred ccccccccccceeccccccccCCCCcccccCcccchhhhcccccCC-CCCCCccccccccceeccccccccccC-CCCCC
Q 001253 143 PKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISG-SLPPTLGNLKRLKSFRAGQNLISGSLP-SEIGG 220 (1114)
Q Consensus 143 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~ 220 (1114)
|..|+++++|++|+|++|++++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+++
T Consensus 67 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence 8899999999999999999998777779999999999999999986 456788888888888888887444444 67888
Q ss_pred CCccceeeccccccCCCCcccccccccccEEEecCCcccCccccccccccccchhhcccccccCCc--hh-hhcCCCccc
Q 001253 221 CESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQVGQL--PK-ELGSIGSLK 297 (1114)
Q Consensus 221 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~~~--p~-~~~~l~~L~ 297 (1114)
+++|++|++++|++++..|..++.+++|++|++++|.+....+..+..+++|++|++++|.+.+.. |. ....+++|+
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 226 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence 888888888888888778888888888888888888876432223356777888888877776642 21 223466777
Q ss_pred eeeecccccccccCcc----ccccccccccccccccCCCCCchhhhcccccceeecccccccCcccccccccccCCEEEc
Q 001253 298 YLYIYRNELNGTIPRE----IGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELTTLKNLTKLDL 373 (1114)
Q Consensus 298 ~L~L~~n~l~~~~p~~----l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 373 (1114)
+|++++|.+.+..+.. +..+++|+.+++++|.+.+..... ......+..+.+|+.|++
T Consensus 227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~------------------~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN------------------PSESDVVSELGKVETVTI 288 (549)
T ss_dssp EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC------------------CCTTTCCCCCTTCCEEEE
T ss_pred ceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc------------------ccchhhhhhhcccccccc
Confidence 7777777776543322 234455555555555544321000 000112344555666666
Q ss_pred ccccccccc-----cCccccccceeeeeccCCcccCCCCCCC-CcCccceEEEeecccccCCCC---ccccccCccceee
Q 001253 374 SINSLTGTI-----PLGFQYLTNLIMLQLFDNSLVGGIPQRL-GAYSQLWVVDLSDNHLTGKIP---RHICRNTSLIFLN 444 (1114)
Q Consensus 374 s~N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~L~~L~ 444 (1114)
+++.+.... +..+...++|++|++++|.+. .+|..+ ..+++|++|+|++|++++.+| ..+..+++|++|+
T Consensus 289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~ 367 (549)
T 2z81_A 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367 (549)
T ss_dssp ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEE
T ss_pred cccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEE
Confidence 666554211 111233455666667666665 334333 456777777777777766543 2356667777777
Q ss_pred eccCCccCCcC--cccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCcee
Q 001253 445 LETNKLTGSIP--TGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYF 522 (1114)
Q Consensus 445 Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 522 (1114)
+++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|+|++|+|
T Consensus 368 Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l 443 (549)
T 2z81_A 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNL 443 (549)
T ss_dssp CTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCC
T ss_pred ccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCCh
Confidence 77777765332 34677778888888888777 57777777788888888888877 344333 25788888888888
Q ss_pred ccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCccc
Q 001253 523 TGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIP 599 (1114)
Q Consensus 523 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 599 (1114)
++.+ ..+++|++|+|++|+++ .+|. ...+++|+.|+|++|++++.+|..+..+++|++|++++|.+.+..|
T Consensus 444 ~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 444 DSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 8643 46788888888888888 6775 4568889999999999988888888889999999999999887655
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.5e-50 Score=490.52 Aligned_cols=488 Identities=20% Similarity=0.189 Sum_probs=319.1
Q ss_pred hhcccccCCCCCCCccccccccceeccccccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCccc
Q 001253 180 VAYSNNISGSLPPTLGNLKRLKSFRAGQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLS 259 (1114)
Q Consensus 180 ~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 259 (1114)
+.++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|++++..|..|+.+++|++|+|++|+++
T Consensus 11 ~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 11 DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 44556666 5666554 56777777777777666777777777777777777777666667777777777777777777
Q ss_pred CccccccccccccchhhcccccccC-CchhhhcCCCccceeeecccccccccC-ccccccccccccccccccCCCCCchh
Q 001253 260 GVIPKELGNCTSLETLALYDNKQVG-QLPKELGSIGSLKYLYIYRNELNGTIP-REIGKLSSALEIDFSENSLIGEIPVE 337 (1114)
Q Consensus 260 ~~~p~~l~~l~~L~~L~Ls~N~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~~~~ 337 (1114)
+..|..++++++|++|++++|.+.+ ..|..++.+++|++|++++|.+.+.+| ..+..+++|++|++++|.+.+..|..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 6666667777777777777776665 345566677777777777776433443 45666666666666666666666666
Q ss_pred hhcccccceeecccccccCcccccccccccCCEEEcccccccccc--c-CccccccceeeeeccCCcccCCCCCCCCcCc
Q 001253 338 LSKILGLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTI--P-LGFQYLTNLIMLQLFDNSLVGGIPQRLGAYS 414 (1114)
Q Consensus 338 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 414 (1114)
+..+++|+.|++++|.+.......+..+++|++|++++|++++.. + .....+++|+.|++++|.+.+..+..
T Consensus 168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----- 242 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE----- 242 (549)
T ss_dssp TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH-----
T ss_pred hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH-----
Confidence 666666666666666665433333344566666666666665431 1 11223444445555554444322111
Q ss_pred cceEEEeecccccCCCCccccccCccceeeeccCCccCCc------CcccccCCcceEEeeccceeecc-----CCchhh
Q 001253 415 QLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSI------PTGVTRCKSLVQLRLGGNSFTGS-----FPSDLC 483 (1114)
Q Consensus 415 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~------p~~~~~l~~L~~L~L~~N~l~~~-----~p~~~~ 483 (1114)
++..+..+++|+.|++++|.+.+.. ...+..+.+|+.|++.++.+... ++..+.
T Consensus 243 ---------------l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 243 ---------------LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp ---------------HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred ---------------HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 1112233344555555555444311 12234455666666666654421 222234
Q ss_pred ccccccEeecccccCCCCccccc-cccccCcEEEecCceeccCCC---ccccCCCCcceeeccccccccccc--cccccc
Q 001253 484 KLANLSTVELDQNQFSGPIPTEI-GNCNALQRLHLSDNYFTGELP---REVGNLSNLVTFNVSSNFLTGRIP--LEIFSC 557 (1114)
Q Consensus 484 ~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l 557 (1114)
...+|+.|++++|+++ .+|..+ ..+++|++|+|++|++++.+| ..++.+++|++|+|++|++++..+ ..+..+
T Consensus 308 ~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386 (549)
T ss_dssp HSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC
T ss_pred hcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC
Confidence 4566777777777776 455554 467777777777777776553 336677777777787777764322 346677
Q ss_pred ccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhh
Q 001253 558 KMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALN 637 (1114)
Q Consensus 558 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~ 637 (1114)
++|+.|+|++|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|+|++|+|++.+ ..+++|+ .|+
T Consensus 387 ~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~-~L~ 457 (549)
T 2z81_A 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQ-ELY 457 (549)
T ss_dssp TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCC-EEE
T ss_pred CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhc-EEE
Confidence 77888888888777 56777777778888888888877 344433 257888888888888643 4667777 688
Q ss_pred cccccccccCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCCCccccc
Q 001253 638 LSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPSSQTFQ 702 (1114)
Q Consensus 638 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~~~~~~ 702 (1114)
|++|+|+ .+|. .+.+++|++|||++|+|++.+|+.|..+++|+.|++++|+|.|.+|....+.
T Consensus 458 Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~ 520 (549)
T 2z81_A 458 ISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 520 (549)
T ss_dssp CCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHH
T ss_pred CCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHH
Confidence 8888888 4565 5678899999999999999999999999999999999999999999644443
No 19
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=1.1e-50 Score=447.03 Aligned_cols=259 Identities=26% Similarity=0.439 Sum_probs=213.3
Q ss_pred hcCCcCCceecccCCeEEEEEEeC------CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR------TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG 881 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 881 (1114)
.++|.+.++||+|+||+||+|++. +++.||||+++.. .....++|.+|++++++++|||||+++|+|.+++
T Consensus 12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~ 88 (299)
T 4asz_A 12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA---SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD 88 (299)
T ss_dssp GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC---ChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC
Confidence 367888999999999999999864 4778999999753 3344678999999999999999999999999999
Q ss_pred ceEEEEecCCCCCHHHHhccC------------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC
Q 001253 882 SNLLMYEYMARGSLGELLHGA------------SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF 949 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~ 949 (1114)
..|+|||||++|+|.++++.. ...++|.++..++.|||+||+|||++ +|+||||||+|||+++++
T Consensus 89 ~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~ 165 (299)
T 4asz_A 89 PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENL 165 (299)
T ss_dssp SEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGG
T ss_pred EEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCC
Confidence 999999999999999999743 24799999999999999999999998 999999999999999999
Q ss_pred CeEEeeccCceecCCCCCC-ccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHH
Q 001253 950 EAHVGDFGLAKVIDMPQSK-SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVR 1027 (1114)
Q Consensus 950 ~~kl~DfG~a~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~ 1027 (1114)
.+||+|||+|+........ ......||+.|||||++.+..|+.++|||||||++|||+| |+.||..... .+.+.
T Consensus 166 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~----~~~~~ 241 (299)
T 4asz_A 166 LVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN----NEVIE 241 (299)
T ss_dssp CEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH----HHHHH
T ss_pred cEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH----HHHHH
Confidence 9999999999865432222 2234579999999999999999999999999999999999 8999975432 22222
Q ss_pred HHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1028 NFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
. +..+.. . +.+.....++.+++.+||+.||++||||+||++.|+++.+.
T Consensus 242 ~-i~~~~~--------~----~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 242 C-ITQGRV--------L----QRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp H-HHHTCC--------C----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred H-HHcCCC--------C----CCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 2 222111 0 11122335688999999999999999999999999998664
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.9e-49 Score=489.75 Aligned_cols=592 Identities=22% Similarity=0.202 Sum_probs=352.8
Q ss_pred CCCCCCCCCCCCCCCCCccceEEEecCCCccEEEEEeecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCCCC
Q 001253 48 DNSNYLGNWNPNDSTPCGWIGVNCTTNDFGAVVFSLNLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNCSS 127 (1114)
Q Consensus 48 ~~~~~~~~W~~~~~~~C~w~gv~C~~~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 127 (1114)
|+...+++|+... |..|....|.... . ..+.++.+++ .+|+.+. +.+++||||+|+|++..|.+|+++++
T Consensus 8 ~~~~~~~~~~~~~--p~~~~~c~~~~~~--~---~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~ 77 (635)
T 4g8a_A 8 DDDDKLAAANSSI--PESWEPCVEVVPN--I---TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPE 77 (635)
T ss_dssp -------------------CCSEEEETT--T---EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCcchhhcccCCC--CCCCCCccccCCC--C---EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCC
Confidence 4455677887543 3445554443321 1 2355555665 3455442 36899999999998777788999999
Q ss_pred CCEEEccCCCcccccccccccccccceeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccceeccc
Q 001253 128 LEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQ 207 (1114)
Q Consensus 128 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~ 207 (1114)
|++|+|++|.|++..|++|++|++|++|+|++|+|++..+..|.++++|++|++++|++++..+..|+++++|++|++++
T Consensus 78 L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 157 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc
Confidence 99999999999987788899999999999999999866667788888888888888888866666777777777777777
Q ss_pred ccccc-ccCCCCCCCCccceeeccccccCCCCccccccccccc----EEEecCCcccCccccccccccccchhhcccccc
Q 001253 208 NLISG-SLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLT----DVILWGNQLSGVIPKELGNCTSLETLALYDNKQ 282 (1114)
Q Consensus 208 n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~ 282 (1114)
|.+.+ ..|..++.+++|++|+|++|++++..|..+..+++++ .++++.|.++...+. ......++.|++.+|..
T Consensus 158 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 158 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFD 236 (635)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCS
T ss_pred CccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccc
Confidence 77754 3456666777777777777777766666666555433 566666666643333 33333455566655543
Q ss_pred cCC-chhhhcCCCccceeeecccccccccCccccccccccccccccccCCCCCchhhhcccccceeecccccccCccccc
Q 001253 283 VGQ-LPKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVE 361 (1114)
Q Consensus 283 ~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 361 (1114)
... .+..+..+..++...+..+..... ..+.......
T Consensus 237 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~------------------------------------------~~l~~~~~~~ 274 (635)
T 4g8a_A 237 SLNVMKTCIQGLAGLEVHRLVLGEFRNE------------------------------------------GNLEKFDKSA 274 (635)
T ss_dssp SHHHHHHHHHTTTTCEEEEEEEECCTTS------------------------------------------CCCSCCCTTT
T ss_pred cccccchhhcCCcccccccccccccccc------------------------------------------cccccccccc
Confidence 322 223344445444444433222100 0001111112
Q ss_pred ccccccCCEEEccccccc---ccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccC
Q 001253 362 LTTLKNLTKLDLSINSLT---GTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNT 438 (1114)
Q Consensus 362 ~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 438 (1114)
+..+..+..+++..+... ...+..+..+.+++.+.+.+|.+.... .+.....|+.|++++|.+.+..+. .+.
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~ 349 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLK 349 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCT
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cch
Confidence 222233333333332221 112223333444444444444443222 123344566666666666543322 234
Q ss_pred ccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEec
Q 001253 439 SLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLS 518 (1114)
Q Consensus 439 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 518 (1114)
.|+.++++.|.+... .....+++|+.|++++|.+... +..+..+..+.+|+.|+++
T Consensus 350 ~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~----------------------~~~~~~~~~~~~L~~L~~~ 405 (635)
T 4g8a_A 350 SLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFK----------------------GCCSQSDFGTISLKYLDLS 405 (635)
T ss_dssp TCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEE----------------------EECCHHHHSCSCCCEEECC
T ss_pred hhhhcccccccCCCC--cccccccccccchhhccccccc----------------------cccccchhhhhhhhhhhcc
Confidence 455555555555422 1223445555555555544311 1223333444555555555
Q ss_pred CceeccCCCccccCCCCcceeeccccccccccc-ccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCC-C
Q 001253 519 DNYFTGELPREVGNLSNLVTFNVSSNFLTGRIP-LEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELS-G 596 (1114)
Q Consensus 519 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~ 596 (1114)
.|.+.+ .+..+..+++|+.+++++|......+ ..+..+++++.+++++|.+.+..|..+..++.|++|+|++|.+. +
T Consensus 406 ~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~ 484 (635)
T 4g8a_A 406 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484 (635)
T ss_dssp SCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred cccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc
Confidence 555542 33445555555555555555443333 23445666666666666666666666666777777777776533 3
Q ss_pred cccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccc
Q 001253 597 SIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFV 676 (1114)
Q Consensus 597 ~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~ 676 (1114)
..|..|..+++|++|||++|+|++.+|..|.++++|+ .|+|++|+|++..|..|+++++|++|||++|+|++.+|+.|.
T Consensus 485 ~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~-~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 563 (635)
T 4g8a_A 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 563 (635)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT
T ss_pred cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC-EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH
Confidence 4667777778888888888888877788888888887 688888888888888889999999999999999999999999
Q ss_pred cc-cccceEEeccCcccCCCCCccccccccccc---ccCCCCCCCCCCCCC
Q 001253 677 NL-SSLLGCNFSYNNLTGPIPSSQTFQNMSVNS---FSGSKGLCGGPLQNC 723 (1114)
Q Consensus 677 ~l-~~l~~l~ls~N~l~g~ip~~~~~~~~~~~~---~~~n~~lc~~p~~~~ 723 (1114)
.+ ++|+.|++++|+|+|.+...+-.+|+.... .......|..|....
T Consensus 564 ~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~ 614 (635)
T 4g8a_A 564 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 614 (635)
T ss_dssp CCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTT
T ss_pred hhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHC
Confidence 98 689999999999999988655444443221 112235687765433
No 21
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=5.6e-50 Score=447.62 Aligned_cols=259 Identities=26% Similarity=0.431 Sum_probs=207.6
Q ss_pred hcCCcCCceecccCCeEEEEEEeC------CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR------TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG 881 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 881 (1114)
.++|.+.++||+|+||+||+|+++ +++.||||+++.. .....++|.+|++++++++|||||+++|+|.+++
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~---~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~ 116 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA---SESARQDFQREAELLTMLQHQHIVRFFGVCTEGR 116 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC---SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS
T ss_pred HHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC---CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC
Confidence 357888899999999999999864 4788999999743 3345678999999999999999999999999999
Q ss_pred ceEEEEecCCCCCHHHHhccCC--------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC
Q 001253 882 SNLLMYEYMARGSLGELLHGAS--------------STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD 947 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~--------------~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~ 947 (1114)
..|+|||||++|+|.++++... ..++|.++..++.|||+||+|||+. +|+||||||+|||+++
T Consensus 117 ~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~ 193 (329)
T 4aoj_A 117 PLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQ 193 (329)
T ss_dssp SEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEET
T ss_pred EEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECC
Confidence 9999999999999999997532 3589999999999999999999998 9999999999999999
Q ss_pred CCCeEEeeccCceecCCCCC-CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHH
Q 001253 948 KFEAHVGDFGLAKVIDMPQS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTW 1025 (1114)
Q Consensus 948 ~~~~kl~DfG~a~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~ 1025 (1114)
++.+||+|||+|+....... ......+||+.|||||++.+..|+.++|||||||++|||+| |+.||..... .+.
T Consensus 194 ~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~----~~~ 269 (329)
T 4aoj_A 194 GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN----TEA 269 (329)
T ss_dssp TTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH----HHH
T ss_pred CCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH----HHH
Confidence 99999999999987643322 23345679999999999999999999999999999999999 8999975432 222
Q ss_pred HHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1026 VRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
+.. +..+. ++ +.+.....++.+++.+||+.||++||||+||++.|+.+.+.
T Consensus 270 ~~~-i~~g~--------~~----~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 270 IDC-ITQGR--------EL----ERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp HHH-HHHTC--------CC----CCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred HHH-HHcCC--------CC----CCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 222 22111 11 11222335688999999999999999999999999998654
No 22
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=5e-50 Score=443.66 Aligned_cols=256 Identities=27% Similarity=0.403 Sum_probs=211.3
Q ss_pred cCCcCCceecccCCeEEEEEEeC------CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR------TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS 882 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 882 (1114)
.+++..++||+|+||+||+|++. +++.||||+++..... ...++|.+|+.++++++|||||+++|+|.+++.
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~--~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~ 103 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEG--PLREEFRHEAMLRARLQHPNVVCLLGVVTKDQP 103 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccCh--HHHHHHHHHHHHHHhCCCCCCCCcceEEEECCE
Confidence 45777889999999999999973 4678999999755432 346789999999999999999999999999999
Q ss_pred eEEEEecCCCCCHHHHhccCC---------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC
Q 001253 883 NLLMYEYMARGSLGELLHGAS---------------STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD 947 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~---------------~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~ 947 (1114)
.++|||||++|+|.++++... ..++|.++..++.|||+||+|||++ +||||||||+|||+++
T Consensus 104 ~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~ 180 (308)
T 4gt4_A 104 LSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYD 180 (308)
T ss_dssp CEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECG
T ss_pred EEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECC
Confidence 999999999999999996432 3689999999999999999999998 9999999999999999
Q ss_pred CCCeEEeeccCceecCCCC-CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHH
Q 001253 948 KFEAHVGDFGLAKVIDMPQ-SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTW 1025 (1114)
Q Consensus 948 ~~~~kl~DfG~a~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~ 1025 (1114)
++++||+|||+|+...... .......+||+.|||||++.+..|+.++|||||||++|||+| |+.||..... .+
T Consensus 181 ~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~----~~- 255 (308)
T 4gt4_A 181 KLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN----QD- 255 (308)
T ss_dssp GGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH----HH-
T ss_pred CCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH----HH-
Confidence 9999999999998654322 223445689999999999999999999999999999999998 8999975432 22
Q ss_pred HHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhh
Q 001253 1026 VRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSES 1086 (1114)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1086 (1114)
+...+..+.. . +.+......+.++|.+||+.||++||||+||++.|+.+
T Consensus 256 ~~~~i~~~~~--------~----~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 256 VVEMIRNRQV--------L----PCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHHHHHTTCC--------C----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHHHHcCCC--------C----CCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 2222322211 1 11222345688999999999999999999999999875
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.9e-50 Score=484.83 Aligned_cols=476 Identities=19% Similarity=0.181 Sum_probs=330.1
Q ss_pred eeeccccccCCCCcccccccccccEEEecCCcccCccccccccccccchhhcccccccCCchhhhcCCCccceeeecccc
Q 001253 226 YLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQVGQLPKELGSIGSLKYLYIYRNE 305 (1114)
Q Consensus 226 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~ 305 (1114)
+|++++|+++ .+|..+. ++|++|++++|++++..|..|.++++|++|+|++|++.+..|..|+.+++|++|+|++|+
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 3445555554 3444333 445555555555554444445555555555555555554445555555555555555555
Q ss_pred cccccCccccccccccccccccccCCC-CCchhhhcccccceeecccccccCcccccccccccC--CEEEcccccc--cc
Q 001253 306 LNGTIPREIGKLSSALEIDFSENSLIG-EIPVELSKILGLELLYLFENKLTGVIPVELTTLKNL--TKLDLSINSL--TG 380 (1114)
Q Consensus 306 l~~~~p~~l~~l~~L~~L~ls~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~Ls~N~l--~~ 380 (1114)
++ .+|.. .+++|++|++++|.+.+ .+|..++++++|+.|++++|++++ ..+..+++| ++|++++|.+ .+
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 55 34433 45555666666666554 345566666666666666666654 345555566 7777777777 66
Q ss_pred cccCcccccc-ceeeeeccCCcccCCCCC-CCCcCccceEEEeeccc-------ccCCCCccccccCccceeeeccCCcc
Q 001253 381 TIPLGFQYLT-NLIMLQLFDNSLVGGIPQ-RLGAYSQLWVVDLSDNH-------LTGKIPRHICRNTSLIFLNLETNKLT 451 (1114)
Q Consensus 381 ~~~~~~~~l~-~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~~~~L~~L~Ls~N~l~ 451 (1114)
..|..+..+. +...+++++|.+.+.++. .+..+++|+.|++++|. +.+.+| .+..+++|+.|++++|.++
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence 6666666655 344566777776665443 46677788888888876 555555 6777788888888888776
Q ss_pred CCcCcccc---cCCcceEEeeccceeeccCCchh-----hccccccEeecccccCCCCcc-cccccc---ccCcEEEecC
Q 001253 452 GSIPTGVT---RCKSLVQLRLGGNSFTGSFPSDL-----CKLANLSTVELDQNQFSGPIP-TEIGNC---NALQRLHLSD 519 (1114)
Q Consensus 452 ~~~p~~~~---~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~L~Ls~ 519 (1114)
+..+..+. ..++|++|++++|+++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence 53322221 24578888888888888888887 7888888888888888 344 555554 6788889988
Q ss_pred ceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccC--CCchhhhhcccCCeeeccCccCCCc
Q 001253 520 NYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVG--ALPREIGSLFQLELLKLSENELSGS 597 (1114)
Q Consensus 520 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~ 597 (1114)
|.+.+.. .+..+++|++|++++|++++.+|..+..+++|+.|+|++|++++ .+|..++.+++|++|++++|++++.
T Consensus 312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred Ccccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 8876432 12678888999999999988788888889999999999999886 5667888999999999999999975
Q ss_pred cccc-ccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccc
Q 001253 598 IPVQ-IGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFV 676 (1114)
Q Consensus 598 ~p~~-~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~ 676 (1114)
+|.. +..+++|++|++++|++++.+|..+. ++|+ .|+|++|+++ .+|..+..+++|++|||++|+|++..+..|.
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~-~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 465 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK-VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC-EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc--ccCC-EEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhc
Confidence 6654 78889999999999999888887765 5777 7999999999 6788888999999999999999954444499
Q ss_pred cccccceEEeccCcccCCCCCccc-cccccccc-ccCCCCCCCCC
Q 001253 677 NLSSLLGCNFSYNNLTGPIPSSQT-FQNMSVNS-FSGSKGLCGGP 719 (1114)
Q Consensus 677 ~l~~l~~l~ls~N~l~g~ip~~~~-~~~~~~~~-~~~n~~lc~~p 719 (1114)
.+++|+.|++++|+++|.++..+. ..++.... .......|+.|
T Consensus 466 ~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p 510 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 510 (520)
T ss_dssp TCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTT
T ss_pred cCCcccEEECcCCCCcccCCchHHHHHHHHhccccCCCCCCcCCc
Confidence 999999999999999999886544 22332221 12234567765
No 24
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=5.7e-50 Score=439.05 Aligned_cols=269 Identities=20% Similarity=0.273 Sum_probs=222.4
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.++||+|+||+||+|+.+ +|+.||||++.+.........+.+.+|++++++++|||||++++++++++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 57999999999999999999976 79999999997654323334677899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC-
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ- 966 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~- 966 (1114)
||++||+|.+++++ ...+++.++..++.||+.||+|||++ +|+||||||+|||+++++.+||+|||+|+.+....
T Consensus 112 Ey~~gG~L~~~i~~-~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~ 187 (311)
T 4aw0_A 112 SYAKNGELLKYIRK-IGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187 (311)
T ss_dssp CCCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTT
T ss_pred ecCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCC
Confidence 99999999999974 35799999999999999999999999 99999999999999999999999999999875332
Q ss_pred CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
.....+.+||+.|||||++.+..|+.++||||+||++|||++|+.||.... ..+..+..... .+ .
T Consensus 188 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~----~~~~~~~i~~~-~~---------~- 252 (311)
T 4aw0_A 188 QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN----EGLIFAKIIKL-EY---------D- 252 (311)
T ss_dssp CCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHT-CC---------C-
T ss_pred cccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHcC-CC---------C-
Confidence 234557799999999999999999999999999999999999999997432 23333332222 11 1
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCcccccCCCCCc
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFEFSPMDHDSD 1103 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~~~~~~~~~~ 1103 (1114)
.+.....++.+++.+||+.||++|||++|++.. ..+ ..+.++..+||+.-
T Consensus 253 ---~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~-~~i---~~Hp~F~~idw~~l 302 (311)
T 4aw0_A 253 ---FPEKFFPKARDLVEKLLVLDATKRLGCEEMEGY-GPL---KAHPFFESVTWENL 302 (311)
T ss_dssp ---CCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCH-HHH---HTSGGGTTCCCTTG
T ss_pred ---CCcccCHHHHHHHHHHccCCHhHCcChHHHcCC-HHH---HCCCCcCCCCHHHh
Confidence 111223467899999999999999999986432 111 24678889999864
No 25
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=6.4e-49 Score=437.43 Aligned_cols=249 Identities=22% Similarity=0.361 Sum_probs=209.5
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
+.|++.++||+|+||+||+|+++ +|+.||||++....... .+.+.+|+.+++.++|||||+++++|.+++..|+||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivm 150 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR---RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM 150 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSS---GGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhH---HHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 56899999999999999999986 79999999997654432 345788999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
|||+||+|.++++. ..+++.++..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+.+... .
T Consensus 151 Ey~~gg~L~~~l~~--~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~-~ 224 (346)
T 4fih_A 151 EFLEGGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-V 224 (346)
T ss_dssp CCCTTEEHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSS-S
T ss_pred eCCCCCcHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCC-C
Confidence 99999999999974 4699999999999999999999999 9999999999999999999999999999976532 2
Q ss_pred CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccCC
Q 001253 968 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQ 1047 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1114)
....+.+||+.|||||++.+..|+.++||||+||++|||++|+.||.... ..+.++....... +.
T Consensus 225 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~----~~~~~~~i~~~~~-------~~---- 289 (346)
T 4fih_A 225 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP----PLKAMKMIRDNLP-------PR---- 289 (346)
T ss_dssp CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----HHHHHHHHHHSSC-------CC----
T ss_pred CcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC----HHHHHHHHHcCCC-------CC----
Confidence 33456789999999999999999999999999999999999999997432 2233332222110 01
Q ss_pred CcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1048 DEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1048 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.........++.+++.+||+.||++|||++|+++
T Consensus 290 ~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 290 LKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred CCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1111223456889999999999999999999875
No 26
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=2.4e-49 Score=441.54 Aligned_cols=251 Identities=23% Similarity=0.344 Sum_probs=205.4
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.++||+|+||+||+|+++ +|+.||||++...... ....+.+.+|+.++++++|||||++++++.+++..|+||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMS-SKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCC-HHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence 68999999999999999999976 7999999999766543 334667899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 888 EYMARGSLGELLHGA-SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+||+|.++++.. ...+++.++..++.||+.||+|||++ +|+||||||+|||+++++.+||+|||+|+.... .
T Consensus 103 Ey~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~-~ 178 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS-T 178 (350)
T ss_dssp ECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCH-H
T ss_pred eCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecC-C
Confidence 999999999999744 34679999999999999999999999 999999999999999999999999999987532 1
Q ss_pred CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
.....+.+||+.|||||++.+..|+.++||||+||++|||++|+.||... ...+.+....... +.
T Consensus 179 ~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~----~~~~~~~~i~~~~-~~---------- 243 (350)
T 4b9d_A 179 VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG----SMKNLVLKIISGS-FP---------- 243 (350)
T ss_dssp HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS----SHHHHHHHHHHTC-CC----------
T ss_pred cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc----CHHHHHHHHHcCC-CC----------
Confidence 12234568999999999999999999999999999999999999999743 3333333333221 10
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
..+.....++.+++.+||+.||++|||++|+++
T Consensus 244 --~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 244 --PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp --CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred --CCCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 111122346889999999999999999999975
No 27
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=4.9e-49 Score=443.38 Aligned_cols=272 Identities=25% Similarity=0.388 Sum_probs=222.2
Q ss_pred CCHHHHHHHhcCCcCCceecccCCeEEEEEEeC------CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCC-Ccee
Q 001253 799 FTFKDLVVATDNFDERFVIGRGACGTVYRAVLR------TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRH-RNIV 871 (1114)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv 871 (1114)
+..+++++..++|++.++||+|+||+||+|++. +++.||||++..... ....+.|.+|+.++++++| ||||
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~--~~~~~~~~~E~~il~~l~hhpnIV 131 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT--HSEHRALMSELKILIHIGHHLNVV 131 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccC--hHHHHHHHHHHHHHHHcCCCCcEE
Confidence 445667788899999999999999999999964 246899999975443 2345679999999999965 8999
Q ss_pred eEEeEEEec-CceEEEEecCCCCCHHHHhccC---------------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEe
Q 001253 872 KLYGFCYHQ-GSNLLMYEYMARGSLGELLHGA---------------SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFH 935 (1114)
Q Consensus 872 ~l~~~~~~~-~~~~lv~E~~~~gsL~~~l~~~---------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH 935 (1114)
+++|+|.+. +..|+|||||++|+|.++++.. ...+++.++..++.|||+||+|||++ +|||
T Consensus 132 ~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiH 208 (353)
T 4ase_A 132 NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIH 208 (353)
T ss_dssp CEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCC
T ss_pred EEEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---Ceec
Confidence 999999764 5689999999999999999742 23589999999999999999999999 9999
Q ss_pred cCCCCCCeEECCCCCeEEeeccCceecCCCCCC-ccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCC
Q 001253 936 RDIKSNNILLDDKFEAHVGDFGLAKVIDMPQSK-SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPV 1013 (1114)
Q Consensus 936 ~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~ 1013 (1114)
|||||+|||+++++.+||+|||+|+........ .....+||+.|||||++.+..|+.++|||||||++|||+| |+.||
T Consensus 209 RDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf 288 (353)
T 4ase_A 209 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY 288 (353)
T ss_dssp SCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred CccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCC
Confidence 999999999999999999999999976433332 3345679999999999999999999999999999999998 89999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCC
Q 001253 1014 QPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQG 1091 (1114)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~ 1091 (1114)
........+...+.+ +. ++ ..+.....++.++|.+||+.||++||||+||++.|+++.+...
T Consensus 289 ~~~~~~~~~~~~i~~----g~--------~~----~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~~ 350 (353)
T 4ase_A 289 PGVKIDEEFCRRLKE----GT--------RM----RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 350 (353)
T ss_dssp TTCCCSHHHHHHHHH----TC--------CC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHc----CC--------CC----CCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHhh
Confidence 865543333222222 11 11 1112223468899999999999999999999999999876543
No 28
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.1e-48 Score=434.38 Aligned_cols=254 Identities=25% Similarity=0.294 Sum_probs=209.5
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
+.|+..++||+|+||+||+|+++ +|+.||||+++.... ..+|+.+++.++|||||++++++.+++..|+||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~--------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivm 129 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF--------RVEELVACAGLSSPRIVPLYGAVREGPWVNIFM 129 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC--------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh--------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 56888889999999999999986 799999999975432 236999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC-CeEEeeccCceecCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF-EAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~-~~kl~DfG~a~~~~~~~ 966 (1114)
|||+||+|.++++.. ..+++.++..++.||+.||+|||++ +|+||||||+|||++.++ ++||+|||+|+.+....
T Consensus 130 Ey~~gg~L~~~l~~~-~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 130 ELLEGGSLGQLIKQM-GCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred eccCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCC
Confidence 999999999999743 4799999999999999999999998 999999999999999988 69999999999765322
Q ss_pred C----CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccc
Q 001253 967 S----KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDA 1042 (1114)
Q Consensus 967 ~----~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1114)
. ......+||+.|||||++.+..|+.++||||+||++|||++|+.||.............. ....
T Consensus 206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~----~~~~------- 274 (336)
T 4g3f_A 206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIAS----EPPP------- 274 (336)
T ss_dssp --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHH----SCCG-------
T ss_pred cccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHc----CCCC-------
Confidence 1 122346899999999999999999999999999999999999999986554443332221 1110
Q ss_pred cccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1043 RLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1043 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
. ...+......+.+++.+||+.||++|||+.|+++.+.++...
T Consensus 275 -~---~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~ 317 (336)
T 4g3f_A 275 -I---REIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQE 317 (336)
T ss_dssp -G---GGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -c---hhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhh
Confidence 0 011122345688999999999999999999999998887554
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.6e-48 Score=480.83 Aligned_cols=483 Identities=21% Similarity=0.212 Sum_probs=274.2
Q ss_pred CccCEEEecCCcccCCCCcccCCCCCCCEEEc-cCCCcccccccccccc----ccc--ceeccccc-cccCCCCcccccC
Q 001253 102 VHLTALDLSFNQLSRNIPKEIGNCSSLEVLNL-NNNRLEAHIPKELGNL----SSL--TILNIYNN-RISGPFPKEIGKL 173 (1114)
Q Consensus 102 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L-~~n~l~~~~p~~l~~l----~~L--~~L~L~~N-~l~~~~p~~~~~l 173 (1114)
.+++.|+|++|+++|.+|++|++|++|++|+| ++|.++|..|-..... +.+ +.+..... .+....|. ..+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~--~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR--LNL 400 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGG--GGS
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcc--hhh
Confidence 57889999999999999999999999999999 8888887644221111 110 11110000 00000000 011
Q ss_pred cccchhhhcccccCCCCCCCccccccccceeccc--cccccccCCCCCCCCccceeeccccccCC---------------
Q 001253 174 SALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQ--NLISGSLPSEIGGCESLQYLGLAQNQLSG--------------- 236 (1114)
Q Consensus 174 ~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~--n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--------------- 236 (1114)
..+....+..+.. ..+....+...++.+.+.. |.+++ +|..|+++++|++|+|++|++++
T Consensus 401 s~l~~~~l~~~~~--~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~ 477 (876)
T 4ecn_A 401 SDLLQDAINRNPE--MKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477 (876)
T ss_dssp CHHHHHHHHTCTT--SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hHHHHHHhhhCcc--ccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccc
Confidence 1111111111110 0111112223334444433 55555 55566666666666666666665
Q ss_pred --CCccccc--ccccccEEEecCCcccCccccccccccccchhhccccc-ccC-CchhhhcCCC-------ccceeeecc
Q 001253 237 --EIPKEIG--MLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNK-QVG-QLPKELGSIG-------SLKYLYIYR 303 (1114)
Q Consensus 237 --~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~-~~~-~~p~~~~~l~-------~L~~L~L~~ 303 (1114)
.+|..++ .+++|++|+|++|.+.+.+|..|+++++|+.|+|++|+ +.+ .+|..++.++ +|++|+|++
T Consensus 478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred cccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 3666665 66666666666666666666666666666666666665 555 5666555544 677777777
Q ss_pred cccccccCc--cccccccccccccccccCCCCCchhhhcccccceeecccccccCccccccccccc-CCEEEcccccccc
Q 001253 304 NELNGTIPR--EIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELTTLKN-LTKLDLSINSLTG 380 (1114)
Q Consensus 304 n~l~~~~p~--~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~ 380 (1114)
|++. .+|. .++.+++|++|++++|++. .+| .+..+++|+.|+|++|+++ .+|..+..+++ |+.|+|++|.++
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence 7666 6666 6666666666666666666 555 6666666666666666666 55556666666 666666666666
Q ss_pred cccCccccccc--eeeeeccCCcccCCCCCCC---C--cCccceEEEeecccccCCCCccc-cccCccceeeeccCCccC
Q 001253 381 TIPLGFQYLTN--LIMLQLFDNSLVGGIPQRL---G--AYSQLWVVDLSDNHLTGKIPRHI-CRNTSLIFLNLETNKLTG 452 (1114)
Q Consensus 381 ~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~---~--~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~L~~L~Ls~N~l~~ 452 (1114)
.+|..+..++. |+.|++++|++.+.+|... . ..++|+.|+|++|+++ .+|..+ ..+++|+.|+|++|+|+
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~- 710 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT- 710 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-
Confidence 55555555543 6666666666665544322 1 2235666666666666 334333 35566666666666666
Q ss_pred CcCccccc--------CCcceEEeeccceeeccCCchhh--ccccccEeecccccCCCCccccccccccCcEEEecCcee
Q 001253 453 SIPTGVTR--------CKSLVQLRLGGNSFTGSFPSDLC--KLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYF 522 (1114)
Q Consensus 453 ~~p~~~~~--------l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 522 (1114)
.+|..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|+|++ +|..+.++++|+.|+|++|+
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~- 787 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR- 787 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-
T ss_pred ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-
Confidence 34443322 125666666666665 4555554 55666666666666654 45555566666666665532
Q ss_pred ccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccc
Q 001253 523 TGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQI 602 (1114)
Q Consensus 523 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 602 (1114)
++++|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..+
T Consensus 788 -----------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 788 -----------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp -----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred -----------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 1233555556666666666666666666666 45555544 466666666666665444555
Q ss_pred cccccccccccCCCcCC
Q 001253 603 GNLSRLTELQMGGNSFS 619 (1114)
Q Consensus 603 ~~l~~L~~L~ls~N~l~ 619 (1114)
.....+..+.|++|++.
T Consensus 848 ~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 848 CPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp HHHHHTTCCEEECCTTS
T ss_pred cccccchheeecCCCcc
Confidence 44445555566666554
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.6e-48 Score=466.84 Aligned_cols=459 Identities=19% Similarity=0.214 Sum_probs=278.0
Q ss_pred CEEEecCCcccCCCCcccCCCCCCCEEEccCCCcccccccccccccccceeccccccccCCCCcccccCcccchhhhccc
Q 001253 105 TALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSN 184 (1114)
Q Consensus 105 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n 184 (1114)
++||+++|+++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 45666666665 4665554 66677777777666655566666666666666666666555555555555555555555
Q ss_pred ccCCCCCCCccccccccceecccccccc-ccCCCCCCCCccceeeccccccCCCCcccccccccc--cEEEecCCcc--c
Q 001253 185 NISGSLPPTLGNLKRLKSFRAGQNLISG-SLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYL--TDVILWGNQL--S 259 (1114)
Q Consensus 185 ~i~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L--~~L~L~~N~l--~ 259 (1114)
+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|+|++|++++ ..++.+++| ++|++++|.+ +
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 555 33333 44445555555554443 234455555555555555555543 233444444 5555555544 3
Q ss_pred CccccccccccccchhhcccccccCCchhhhcCCCccceeeecccccccccCc-ccccccccccccccccc-------CC
Q 001253 260 GVIPKELGNCTSLETLALYDNKQVGQLPKELGSIGSLKYLYIYRNELNGTIPR-EIGKLSSALEIDFSENS-------LI 331 (1114)
Q Consensus 260 ~~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~ls~N~-------l~ 331 (1114)
+..|..+..++. +...+++++|.+.+.++. .+..+++|+.|++++|. +.
T Consensus 154 ~~~~~~l~~l~~-----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 154 KEDPEGLQDFNT-----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp SCCTTTTTTCCE-----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred cccccccccccc-----------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence 344444433321 122334444444333322 23344444444444443 22
Q ss_pred CCCchhhhcccccceeecccccccCccccccc---ccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCC
Q 001253 332 GEIPVELSKILGLELLYLFENKLTGVIPVELT---TLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQ 408 (1114)
Q Consensus 332 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 408 (1114)
+.+| .+..+++|+.|++++|.+++..+..+. ..++|++|++++|++++.+|..+...
T Consensus 211 ~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~------------------- 270 (520)
T 2z7x_B 211 SILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY------------------- 270 (520)
T ss_dssp HHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC-------------------
T ss_pred cchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhc-------------------
Confidence 2222 334444444444444444332111110 12345555555555554444433000
Q ss_pred CCCcCccceEEEeecccccCCCC-cccccc---CccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhc
Q 001253 409 RLGAYSQLWVVDLSDNHLTGKIP-RHICRN---TSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCK 484 (1114)
Q Consensus 409 ~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 484 (1114)
....+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|++++..|..++.
T Consensus 271 ~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 346 (520)
T 2z7x_B 271 SGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGH 346 (520)
T ss_dssp CSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCC
T ss_pred ccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhcc
Confidence 005566666666666666 333 344333 56777777777766322 1256777888888888888777888888
Q ss_pred cccccEeecccccCCC--CccccccccccCcEEEecCceeccCCCc-cccCCCCcceeecccccccccccccccccccce
Q 001253 485 LANLSTVELDQNQFSG--PIPTEIGNCNALQRLHLSDNYFTGELPR-EVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQ 561 (1114)
Q Consensus 485 l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 561 (1114)
+++|++|++++|++++ .+|..+..+++|++|+|++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|+
T Consensus 347 l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~ 424 (520)
T 2z7x_B 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK 424 (520)
T ss_dssp CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC
T ss_pred CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCC
Confidence 8888888888888876 4567788888888888888888874554 477888888888888888877776654 7899
Q ss_pred EEECccccccCCCchhhhhcccCCeeeccCccCCCccccc-ccccccccccccCCCcCCCCCC
Q 001253 562 RLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQ-IGNLSRLTELQMGGNSFSGGIP 623 (1114)
Q Consensus 562 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~~~~p 623 (1114)
.|+|++|+++ .+|..+..+++|++|+|++|+++ .+|.. +..+++|++|++++|++++..+
T Consensus 425 ~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 9999999998 78888888999999999999999 45554 8889999999999999987544
No 31
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=2.9e-48 Score=420.11 Aligned_cols=248 Identities=23% Similarity=0.364 Sum_probs=193.5
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.+.||+|+||+||+|+.+ +|+.||||++.+.........+.+.+|+.++++++|||||++++++.+++..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 68999999999999999999975 79999999998766555555678999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+ +|+|.+++... ..+++.++..++.|++.||+|||++ +|+||||||+|||+++++.+||+|||+|+.... .
T Consensus 93 Ey~-~g~L~~~l~~~-~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~--~ 165 (275)
T 3hyh_A 93 EYA-GNELFDYIVQR-DKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD--G 165 (275)
T ss_dssp ECC-CEEHHHHHHHS-CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC--------
T ss_pred eCC-CCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCC--C
Confidence 999 57999998743 5799999999999999999999999 999999999999999999999999999987542 2
Q ss_pred CccccccccccccCccccccCCC-CcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 968 KSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~~~-~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
....+.+||+.|||||++.+..+ +.++||||+||++|||++|+.||... ......+..... .+ .
T Consensus 166 ~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~----~~~~~~~~i~~~-~~---------~- 230 (275)
T 3hyh_A 166 NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE----SIPVLFKNISNG-VY---------T- 230 (275)
T ss_dssp ---------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS----SHHHHHHHHHHT-CC---------C-
T ss_pred CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCC----CHHHHHHHHHcC-CC---------C-
Confidence 33456789999999999998886 57999999999999999999999642 233333332221 11 1
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.+......+.+++.+||+.||++|||++|+++
T Consensus 231 ---~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 231 ---LPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ---CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ---CCCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 11112346789999999999999999999976
No 32
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=9.1e-48 Score=427.19 Aligned_cols=270 Identities=27% Similarity=0.337 Sum_probs=205.7
Q ss_pred cCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC----ceE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG----SNL 884 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~ 884 (1114)
++|.+.++||+|+||+||+|+++ |+.||||++..... ....++.|+..+.+++|||||+++++|.+++ ..|
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~~----~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~ 77 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSREE----RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGGH----HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECccch----hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEE
Confidence 46888899999999999999985 89999999964321 1223445677778899999999999998764 579
Q ss_pred EEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEecCCCCCCeEECCCCCeEEeeccCc
Q 001253 885 LMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDC-----KPRIFHRDIKSNNILLDDKFEAHVGDFGLA 959 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-----~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a 959 (1114)
+|||||++|+|.++++. ..++|..+.+++.|+++||+|||+++ .++|+||||||+|||+++++++||+|||+|
T Consensus 78 lV~Ey~~~gsL~~~l~~--~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla 155 (303)
T 3hmm_A 78 LVSDYHEHGSLFDYLNR--YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp EEEECCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred EEecCCCCCcHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCC
Confidence 99999999999999984 46899999999999999999999762 458999999999999999999999999999
Q ss_pred eecCCCCCC---ccccccccccccCccccccC------CCCcccchHHHHHHHHHHHhCCCCCCCCC----------CCC
Q 001253 960 KVIDMPQSK---SMSAIAGSYGYIAPEYAYTM------KVTEKCDIYSYGVVLLELLTGRAPVQPLD----------QGG 1020 (1114)
Q Consensus 960 ~~~~~~~~~---~~~~~~g~~~y~aPE~~~~~------~~~~~~DvwslGvil~el~tg~~p~~~~~----------~~~ 1020 (1114)
+........ .....+||+.|||||++.+. .++.++|||||||++|||+||+.||.... ...
T Consensus 156 ~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~ 235 (303)
T 3hmm_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD 235 (303)
T ss_dssp EEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSS
T ss_pred ccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhccccc
Confidence 876533221 22346799999999998754 46789999999999999999987664322 112
Q ss_pred CHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCC
Q 001253 1021 DLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQG 1091 (1114)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~ 1091 (1114)
.....+...+..... ++.+.. .....+....+.+++.+||+.||++||||+||++.|+++.+..+
T Consensus 236 ~~~~~~~~~~~~~~~-----rp~~p~-~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~~~ 300 (303)
T 3hmm_A 236 PSVEEMRKVVCEQKL-----RPNIPN-RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEG 300 (303)
T ss_dssp CCHHHHHHHHTTSCC-----CCCCCG-GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHhcccC-----CCCCCc-cccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHHcC
Confidence 222233332222111 111110 11233456678999999999999999999999999999976543
No 33
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=8.3e-48 Score=439.01 Aligned_cols=250 Identities=23% Similarity=0.368 Sum_probs=209.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.+.|++.++||+|+||+||+|+++ +|+.||||++....... .+.+.+|+.+++.++|||||+++++|.+++..|+|
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iV 226 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR---RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV 226 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSS---GGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhH---HHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEE
Confidence 367999999999999999999986 79999999997654332 45588999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
||||+||+|.++++. ..+++.++..++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+.+...
T Consensus 227 mEy~~gG~L~~~i~~--~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~- 300 (423)
T 4fie_A 227 MEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE- 300 (423)
T ss_dssp EECCTTEEHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSS-
T ss_pred EeCCCCCcHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCC-
Confidence 999999999999974 4699999999999999999999999 9999999999999999999999999999976532
Q ss_pred CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
.....+.+||+.|||||++.+..|+.++||||+||++|||++|+.||.... ..+.++...... ...+
T Consensus 301 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~----~~~~~~~i~~~~-------~~~~-- 367 (423)
T 4fie_A 301 VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP----PLKAMKMIRDNL-------PPRL-- 367 (423)
T ss_dssp CCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----HHHHHHHHHHSC-------CCCC--
T ss_pred CccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC----HHHHHHHHHcCC-------CCCC--
Confidence 234456789999999999999999999999999999999999999996432 223333222211 1111
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.........+.+++.+||+.||++|||++|+++
T Consensus 368 --~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 368 --KNLHKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp --SCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred --cccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 111122346889999999999999999999875
No 34
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=4.6e-48 Score=422.52 Aligned_cols=248 Identities=25% Similarity=0.370 Sum_probs=199.5
Q ss_pred cCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe----cCceEEE
Q 001253 812 DERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH----QGSNLLM 886 (1114)
Q Consensus 812 ~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lv 886 (1114)
+..++||+|+||+||+|+++ +++.||+|++...... ....+.|.+|+.++++++|||||+++++|.+ ++..|+|
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~-~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lv 107 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCC-HHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEE
Confidence 56678999999999999976 7899999999765443 3345679999999999999999999999875 3457999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC-CCCeEEeeccCceecCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD-KFEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~-~~~~kl~DfG~a~~~~~~ 965 (1114)
||||+||+|.+++++ ...+++..+..++.||++||+|||++ .++|+||||||+|||++. ++.+||+|||+|+...
T Consensus 108 mEy~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~-- 183 (290)
T 3fpq_A 108 TELMTSGTLKTYLKR-FKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR-- 183 (290)
T ss_dssp EECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC--
T ss_pred EeCCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECCCCCEEEEeCcCCEeCC--
Confidence 999999999999974 35789999999999999999999998 123999999999999984 7999999999998642
Q ss_pred CCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc
Q 001253 966 QSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 966 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
.....+.+||+.|||||++.+ +|+.++|||||||++|||+||+.||..... ... +...+..+.. ...
T Consensus 184 -~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~---~~~-~~~~i~~~~~-----~~~-- 250 (290)
T 3fpq_A 184 -ASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN---AAQ-IYRRVTSGVK-----PAS-- 250 (290)
T ss_dssp -TTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS---HHH-HHHHHTTTCC-----CGG--
T ss_pred -CCccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCc---HHH-HHHHHHcCCC-----CCC--
Confidence 233456789999999998865 699999999999999999999999964332 222 2222222111 000
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.+.....++.+++.+||+.||++|||++|+++
T Consensus 251 ----~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 251 ----FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp ----GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ----CCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 11112235789999999999999999999875
No 35
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=4.3e-48 Score=424.57 Aligned_cols=264 Identities=25% Similarity=0.281 Sum_probs=205.3
Q ss_pred cCCcCCceecccCCeEEEEEEeC----CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR----TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 884 (1114)
++|++.+.||+|+||+||+|+.. +++.||||++.+....... ...+.+|+.++++++|||||++++++.+++..|
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~-~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ 102 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRD-RVRTKMERDILVEVNHPFIVKLHYAFQTEGKLY 102 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEE-CC------CCCCCCCCTTEECEEEEEEETTEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHH-HHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEE
Confidence 57999999999999999999863 5789999999765432211 335778999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCC
Q 001253 885 LMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDM 964 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~ 964 (1114)
+||||++||+|.+++++ ...+++.++..++.|++.||+|||++ +|+||||||+|||+++++.+||+|||+|+....
T Consensus 103 ivmEy~~gg~L~~~l~~-~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 178 (304)
T 3ubd_A 103 LILDFLRGGDLFTRLSK-EVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESID 178 (304)
T ss_dssp EEECCCTTCEEHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC---
T ss_pred EEEEcCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceeccC
Confidence 99999999999999974 34799999999999999999999999 999999999999999999999999999986532
Q ss_pred CCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccc
Q 001253 965 PQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARL 1044 (1114)
Q Consensus 965 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1114)
......+.+||+.|||||++.+..|+.++||||+||++|||++|+.||.... ..+......... .
T Consensus 179 -~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~----~~~~~~~i~~~~----------~ 243 (304)
T 3ubd_A 179 -HEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKD----RKETMTMILKAK----------L 243 (304)
T ss_dssp ---CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCC----------C
T ss_pred -CCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcC----HHHHHHHHHcCC----------C
Confidence 2233456789999999999999999999999999999999999999997432 233333322211 1
Q ss_pred cCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHH-HHHHHHhhhccCCCcccccCCCCC
Q 001253 1045 NLQDEKTVSHMITVLKIAMLCTNISPFDRPTMRE-VVLMLSESNRRQGHFEFSPMDHDS 1102 (1114)
Q Consensus 1045 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~e-vl~~L~~i~~~~~~~~~~~~~~~~ 1102 (1114)
. .+.....++.+++.+||+.||++|||+.. .++++ ..+.++..+||+.
T Consensus 244 ~----~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~ei------l~Hp~f~~idw~~ 292 (304)
T 3ubd_A 244 G----MPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEI------KRHSFFSTIDWNK 292 (304)
T ss_dssp C----CCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHH------HTSGGGTTCCHHH
T ss_pred C----CCCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHH------HcCccccCCCHHH
Confidence 1 11122346889999999999999999631 11111 1355666777653
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.1e-46 Score=462.53 Aligned_cols=523 Identities=20% Similarity=0.152 Sum_probs=403.1
Q ss_pred eEEEec-------CCCccEEEEEeecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCCCCCCEEEccCCCccc
Q 001253 68 GVNCTT-------NDFGAVVFSLNLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEA 140 (1114)
Q Consensus 68 gv~C~~-------~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 140 (1114)
.|.|+. .+.+..++.|+|++|++++..+.+|.++++|++|||++|+|++..|.+|.+|++|++|+|++|+|++
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 466743 3445568999999999998888899999999999999999998788899999999999999999998
Q ss_pred ccccccccccccceeccccccccCCCCcccccCcccchhhhcccccCC-CCCCCccccccccceeccccccccccCCCCC
Q 001253 141 HIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISG-SLPPTLGNLKRLKSFRAGQNLISGSLPSEIG 219 (1114)
Q Consensus 141 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~ 219 (1114)
..++.|.++++|++|+|++|++++..+..|+++++|++|++++|.+++ .+|..++++++|++|++++|.+++..|..+.
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 788889999999999999999998777889999999999999999976 4688999999999999999999998888887
Q ss_pred CCCccc----eeeccccccCCCCcccccccccccEEEecCCcccCc-cccccccccccchhhccccccc------CCchh
Q 001253 220 GCESLQ----YLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGV-IPKELGNCTSLETLALYDNKQV------GQLPK 288 (1114)
Q Consensus 220 ~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~~~------~~~p~ 288 (1114)
.+.+++ .++++.|.++. ++........+..+++.+|..+.. .+..+..+..++...+..+... .....
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~-i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~ 273 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 273 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCE-ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTT
T ss_pred chhhhhhhhhhhhcccCcccc-cCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccc
Confidence 776654 68899999984 555555556788899999876643 3445667777776665433221 12222
Q ss_pred hhcCCCccceeeecccccccccCccccccccccccccccccCCCCCchhhhcccccceeecccccccCcccccccccccC
Q 001253 289 ELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELTTLKNL 368 (1114)
Q Consensus 289 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 368 (1114)
.+..+..+..+.+..+..... .......+....+++.+.+.++.+.... .+.....|
T Consensus 274 ~~~~~~~l~~~~l~~~~~~~~---------------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L 330 (635)
T 4g8a_A 274 ALEGLCNLTIEEFRLAYLDYY---------------------LDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGW 330 (635)
T ss_dssp TTGGGGGSEEEEEEEECCCSC---------------------EEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCC
T ss_pred ccccccchhhhhhhhhhhccc---------------------ccchhhhhhhhccccccccccccccccc--ccccchhh
Confidence 333344444444433322110 0112233444556666777766665443 24455677
Q ss_pred CEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccC--CCCccccccCccceeeec
Q 001253 369 TKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTG--KIPRHICRNTSLIFLNLE 446 (1114)
Q Consensus 369 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~~L~~L~Ls 446 (1114)
+.|++++|.+.+..+. .+..|+.+.+.+|.+... .....+++|++|++++|.+.. ..+..+..+.+|++|+++
T Consensus 331 ~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~ 405 (635)
T 4g8a_A 331 QHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405 (635)
T ss_dssp SEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECC
T ss_pred hhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcc
Confidence 7888888877654433 345666777777766532 234467888888888888753 345666777888889988
Q ss_pred cCCccCCcCcccccCCcceEEeeccceeeccCC-chhhccccccEeecccccCCCCccccccccccCcEEEecCceec-c
Q 001253 447 TNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFP-SDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFT-G 524 (1114)
Q Consensus 447 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~ 524 (1114)
.|.+.. .+..+..+++|+.+++++|++....+ ..+..+.+++.++++.|++++..+..+..++.|+.|+|++|++. +
T Consensus 406 ~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~ 484 (635)
T 4g8a_A 406 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484 (635)
T ss_dssp SCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred cccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc
Confidence 888874 56667888899999998888775544 45778888999999999998888888888999999999988754 4
Q ss_pred CCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccc
Q 001253 525 ELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGN 604 (1114)
Q Consensus 525 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 604 (1114)
..|..|..+++|++|+|++|+|++..|..+.++++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..+..
T Consensus 485 ~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred cCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 57788888999999999999998777888888999999999999998888888888999999999999999888888888
Q ss_pred c-ccccccccCCCcCCC
Q 001253 605 L-SRLTELQMGGNSFSG 620 (1114)
Q Consensus 605 l-~~L~~L~ls~N~l~~ 620 (1114)
+ ++|+.|+|++|++..
T Consensus 565 l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 565 FPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCTTCCEEECTTCCBCC
T ss_pred hhCcCCEEEeeCCCCcc
Confidence 7 679999999998874
No 37
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=5e-46 Score=410.72 Aligned_cols=249 Identities=23% Similarity=0.383 Sum_probs=190.3
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC------
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG------ 881 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 881 (1114)
++|++.+.||+|+||+||+|+++ +|+.||||++.... .+...+.+.+|+.++++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~--~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~ 82 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPN--RELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQ 82 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECS--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccc
Confidence 46899999999999999999976 79999999997543 2344567889999999999999999999987654
Q ss_pred ------ceEEEEecCCCCCHHHHhccCCC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEE
Q 001253 882 ------SNLLMYEYMARGSLGELLHGASS--TLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHV 953 (1114)
Q Consensus 882 ------~~~lv~E~~~~gsL~~~l~~~~~--~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl 953 (1114)
..|+||||+++|+|.++++.... ..++..+..++.|+++||+|||++ +|+||||||+|||++.++.+||
T Consensus 83 ~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl 159 (299)
T 4g31_A 83 PSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKV 159 (299)
T ss_dssp ----CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEE
T ss_pred ccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEE
Confidence 36899999999999999985432 456777889999999999999999 9999999999999999999999
Q ss_pred eeccCceecCCCCC-----------CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCH
Q 001253 954 GDFGLAKVIDMPQS-----------KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDL 1022 (1114)
Q Consensus 954 ~DfG~a~~~~~~~~-----------~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~ 1022 (1114)
+|||+|+....... ....+.+||+.|||||++.+..|+.++||||+||++|||++ ||.... +.
T Consensus 160 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~---~~ 233 (299)
T 4g31_A 160 GDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQM---ER 233 (299)
T ss_dssp CCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHH---HH
T ss_pred ccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCcc---HH
Confidence 99999987643221 12345689999999999999999999999999999999996 664211 11
Q ss_pred HHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1023 VTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
...+.. +....+ ++..........+++.+||+.||++|||+.|+++
T Consensus 234 ~~~~~~-~~~~~~------------p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 234 VRTLTD-VRNLKF------------PPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHHHHH-HHTTCC------------CHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHH-HhcCCC------------CCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 111111 111110 1122233345678999999999999999999875
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-45 Score=449.82 Aligned_cols=459 Identities=19% Similarity=0.191 Sum_probs=290.8
Q ss_pred ceeeccccccCCCCcccccccccccEEEecCCcccCccccccccccccchhhcccccccCCchhhhcCCCccceeeeccc
Q 001253 225 QYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQVGQLPKELGSIGSLKYLYIYRN 304 (1114)
Q Consensus 225 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n 304 (1114)
+++++++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|.+.+..|+.|+.+++|++|+|++|
T Consensus 34 ~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 44444444444 2343332 44444444444444444444444444555555444444444444555555555555555
Q ss_pred ccccccCccccccccccccccccccCCC-CCchhhhcccccceeecccccccCcccccccccccC--CEEEcccccc--c
Q 001253 305 ELNGTIPREIGKLSSALEIDFSENSLIG-EIPVELSKILGLELLYLFENKLTGVIPVELTTLKNL--TKLDLSINSL--T 379 (1114)
Q Consensus 305 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~Ls~N~l--~ 379 (1114)
+++ .+|.. .+++|++|++++|++.+ .+|..+.++++|+.|++++|++++. .+..+++| ++|++++|.+ +
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 554 33433 45555555555555544 2344555555555555555555532 23333333 6666666666 5
Q ss_pred ccccCcccccc-ceeeeeccCCcccCCCCC-CCCcCccceEEEeeccc-----ccCCCCccccccCccceeeeccCCccC
Q 001253 380 GTIPLGFQYLT-NLIMLQLFDNSLVGGIPQ-RLGAYSQLWVVDLSDNH-----LTGKIPRHICRNTSLIFLNLETNKLTG 452 (1114)
Q Consensus 380 ~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~~~~L~~L~Ls~N~l~~ 452 (1114)
+..|..|..+. ....+++++|.+.+.++. .+..+++|+.|++++|+ +.+ ....+..+++|+.|+++++.+.+
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcH
Confidence 55555555443 122445566665554432 34456666667776664 221 12334555666666666665553
Q ss_pred Cc----CcccccCCcceEEeeccceeeccCCchh-----hccccccEeecccccCCCCcc-cccccc---ccCcEEEecC
Q 001253 453 SI----PTGVTRCKSLVQLRLGGNSFTGSFPSDL-----CKLANLSTVELDQNQFSGPIP-TEIGNC---NALQRLHLSD 519 (1114)
Q Consensus 453 ~~----p~~~~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~L~Ls~ 519 (1114)
.. +..+ ..++|++|++++|.++|.+|..+ ..++.|+.++++.|.+ .+| ..+..+ .+|++|++++
T Consensus 264 ~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 264 KCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp HHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccC
Confidence 21 1111 23477788888888777777766 6666777777777776 333 333322 5688888888
Q ss_pred ceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCC--CchhhhhcccCCeeeccCccCCCc
Q 001253 520 NYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGA--LPREIGSLFQLELLKLSENELSGS 597 (1114)
Q Consensus 520 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~ 597 (1114)
|.+.... ....+++|++|++++|++++.+|..+..+++|+.|+|++|++++. +|..++.+++|++|++++|++++.
T Consensus 341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred CCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 8775321 125778888888888888877888888888888888888888863 356688888899999999988875
Q ss_pred ccc-cccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccc
Q 001253 598 IPV-QIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFV 676 (1114)
Q Consensus 598 ~p~-~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~ 676 (1114)
+|. .+..+++|++|++++|++++.+|..+. ++|+ .|+|++|+++ .+|..+..+++|+.|||++|+|++..+..|.
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~-~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 494 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVK-VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFD 494 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCS-EEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTT
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCC-EEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHh
Confidence 554 477888999999999999887777664 5676 6899999998 5677777999999999999999954444499
Q ss_pred cccccceEEeccCcccCCCCCccccc
Q 001253 677 NLSSLLGCNFSYNNLTGPIPSSQTFQ 702 (1114)
Q Consensus 677 ~l~~l~~l~ls~N~l~g~ip~~~~~~ 702 (1114)
.+++|+.|++++|+|.|.+|..+.++
T Consensus 495 ~l~~L~~L~l~~N~~~c~c~~~~~~~ 520 (562)
T 3a79_B 495 RLTSLQYIWLHDNPWDCTCPGIRYLS 520 (562)
T ss_dssp TCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred cCCCCCEEEecCCCcCCCcchHHHHH
Confidence 99999999999999999998765544
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-44 Score=441.80 Aligned_cols=455 Identities=18% Similarity=0.154 Sum_probs=313.7
Q ss_pred EEEeecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCCCCCCEEEccCCCcccccccccccccccceeccccc
Q 001253 81 FSLNLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNN 160 (1114)
Q Consensus 81 ~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N 160 (1114)
..++++++++++ +|..+. ++|++|+|++|.|++..|.+|+.+++|++|+|++|.+++..|+.|+++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 467889999986 776665 79999999999999888889999999999999999999988999999999999999999
Q ss_pred cccCCCCcccccCcccchhhhcccccCC-CCCCCccccccccceeccccccccccCCCCCCCCcc--ceeecccccc--C
Q 001253 161 RISGPFPKEIGKLSALSQLVAYSNNISG-SLPPTLGNLKRLKSFRAGQNLISGSLPSEIGGCESL--QYLGLAQNQL--S 235 (1114)
Q Consensus 161 ~l~~~~p~~~~~l~~L~~L~l~~n~i~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L--~~L~Ls~N~l--~ 235 (1114)
+++ .+|.. .+++|++|++++|++++ .+|..|+++++|++|++++|.+.+. .+..+++| ++|+|++|++ +
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 998 67766 89999999999999987 4568999999999999999998853 45555555 9999999999 8
Q ss_pred CCCcccccccc-cccEEEecCCcccCcccc-ccccccccchhhcccccc----cCCchhhhcCCCccceeeecccccccc
Q 001253 236 GEIPKEIGMLK-YLTDVILWGNQLSGVIPK-ELGNCTSLETLALYDNKQ----VGQLPKELGSIGSLKYLYIYRNELNGT 309 (1114)
Q Consensus 236 ~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~~----~~~~p~~~~~l~~L~~L~L~~n~l~~~ 309 (1114)
+..|..+..++ ..-.+++++|.+.+.++. .+.++++|+.|++++|.. .......+..+++|+.|++.++.+.+.
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 88888888765 222668888988876654 567888999999988842 112334577788888888888776532
Q ss_pred cCccc---cccccccccccccccCCCCCchhh-----hcccccceeecccccccCccccccccc---ccCCEEEcccccc
Q 001253 310 IPREI---GKLSSALEIDFSENSLIGEIPVEL-----SKILGLELLYLFENKLTGVIPVELTTL---KNLTKLDLSINSL 378 (1114)
Q Consensus 310 ~p~~l---~~l~~L~~L~ls~N~l~~~~~~~l-----~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l 378 (1114)
....+ ...++|++|++++|.+.+.+|..+ .+++.|+.+++..|.+ ......+..+ .+|++|++++|.+
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCc
Confidence 11110 112355566666666555555544 4444444444444443 1111111111 3344555555444
Q ss_pred cccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccC--CcCc
Q 001253 379 TGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTG--SIPT 456 (1114)
Q Consensus 379 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~--~~p~ 456 (1114)
. ... ....+++|++|++++|++++.+|..+..+++|++|++++|++++ .+|.
T Consensus 344 ~------------------------~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 397 (562)
T 3a79_B 344 I------------------------HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397 (562)
T ss_dssp C------------------------CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH
T ss_pred c------------------------ccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchh
Confidence 3 211 11345556666666666665556666666666666666666664 2234
Q ss_pred ccccCCcceEEeeccceeeccCCc-hhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCC
Q 001253 457 GVTRCKSLVQLRLGGNSFTGSFPS-DLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSN 535 (1114)
Q Consensus 457 ~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 535 (1114)
.+..+++|++|++++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|++|+|++|+|+ .+|..+..+++
T Consensus 398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~ 474 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA 474 (562)
T ss_dssp TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCC
T ss_pred hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCC
Confidence 566666666666666666653443 356667777777777777666555543 57777777777777 55665557777
Q ss_pred cceeeccccccccccccc-ccccccceEEECccccccCCCc
Q 001253 536 LVTFNVSSNFLTGRIPLE-IFSCKMLQRLDLSWNKFVGALP 575 (1114)
Q Consensus 536 L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p 575 (1114)
|++|+|++|+++ .+|.. +..+++|+.|+|++|.+.+..+
T Consensus 475 L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 475 LQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 777777777777 55555 6677777778888887776543
No 40
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.7e-43 Score=403.88 Aligned_cols=266 Identities=23% Similarity=0.319 Sum_probs=203.5
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe------cC
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH------QG 881 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~ 881 (1114)
++|++.++||+|+||+||+|+++ +|+.||||+++..... ....+.+.+|+.+++.++|||||++++++.. .+
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~-~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDV-VTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSS-HHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccc-hHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 67999999999999999999986 7999999999765443 3335667889999999999999999999764 35
Q ss_pred ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 882 SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
..|+|||||+ |+|.+++.. ...+++.++..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+.
T Consensus 133 ~~~ivmE~~~-g~L~~~i~~-~~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~ 207 (398)
T 4b99_A 133 SVYVVLDLME-SDLHQIIHS-SQPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMARG 207 (398)
T ss_dssp CEEEEEECCS-EEHHHHHTS-SSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEEeCCC-CCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecceeee
Confidence 7899999996 589999974 45799999999999999999999999 999999999999999999999999999986
Q ss_pred cCCC---CCCccccccccccccCccccccC-CCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcc-
Q 001253 962 IDMP---QSKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLV- 1036 (1114)
Q Consensus 962 ~~~~---~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~- 1036 (1114)
+... ......+.+||+.|||||++.+. .++.++||||+||++|||++|+.||.+....+.+. .+..........
T Consensus 208 ~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~-~I~~~~g~p~~~~ 286 (398)
T 4b99_A 208 LCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQ-LIMMVLGTPSPAV 286 (398)
T ss_dssp C-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHH-HHHHHHCCCCGGG
T ss_pred cccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHH-HHHHhcCCCChHH
Confidence 5422 12334567899999999998875 46899999999999999999999997543222111 111111111000
Q ss_pred -ccccc-------ccccCCCccc-----HHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1037 -SGMLD-------ARLNLQDEKT-----VSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1037 -~~~~~-------~~~~~~~~~~-----~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
..... ..+......+ ......+.+++.+||..||++|||++|+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 287 IQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp TC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 00000 0000000001 112346789999999999999999999876
No 41
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=1.9e-43 Score=420.12 Aligned_cols=251 Identities=24% Similarity=0.240 Sum_probs=203.1
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCC---CChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNRE---GNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 884 (1114)
++|++.++||+|+||+||+|+.+ +|+.||||++.+... .........+.++.+++.++|||||+++++|.+.+..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 67999999999999999999986 799999999975432 12222223344567788889999999999999999999
Q ss_pred EEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCC
Q 001253 885 LMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDM 964 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~ 964 (1114)
+||||++||+|.+++.. ...+++..+..++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+.+..
T Consensus 269 lVmEy~~GGdL~~~l~~-~~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~ 344 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQ-HGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSK 344 (689)
T ss_dssp EEECCCCSCBHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred EEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeeecCC
Confidence 99999999999999974 35799999999999999999999999 999999999999999999999999999997643
Q ss_pred CCCCccccccccccccCccccc-cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccc
Q 001253 965 PQSKSMSAIAGSYGYIAPEYAY-TMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDAR 1043 (1114)
Q Consensus 965 ~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
. ...+.+||+.|||||++. +..|+.++||||+||++|||++|+.||...... +.....+......
T Consensus 345 ~---~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~-~~~~i~~~i~~~~---------- 410 (689)
T 3v5w_A 345 K---KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK-DKHEIDRMTLTMA---------- 410 (689)
T ss_dssp C---CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC-CHHHHHHHHHHCC----------
T ss_pred C---CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-HHHHHHHhhcCCC----------
Confidence 2 335678999999999996 457999999999999999999999999754332 2223222222211
Q ss_pred ccCCCcccHHHHHHHHHHHhhccCCCCCCCCC-----HHHHHH
Q 001253 1044 LNLQDEKTVSHMITVLKIAMLCTNISPFDRPT-----MREVVL 1081 (1114)
Q Consensus 1044 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-----~~evl~ 1081 (1114)
...+.....++.+++.+||+.||.+|++ ++||++
T Consensus 411 ----~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 411 ----VELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp ----CCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred ----CCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 1111223346889999999999999998 677653
No 42
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=5.6e-43 Score=397.21 Aligned_cols=198 Identities=26% Similarity=0.374 Sum_probs=171.3
Q ss_pred hcCCcCCceecccCCeEEEEEEeC----CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCc
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR----TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGS 882 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 882 (1114)
.++|++.++||+|+||+||+|+.+ +++.||||++..... ...+.+|+++++.+ +|||||++++++.+.+.
T Consensus 20 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~-----~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~ 94 (361)
T 4f9c_A 20 SNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSH-----PIRIAAELQCLTVAGGQDNVMGVKYCFRKNDH 94 (361)
T ss_dssp GGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSC-----HHHHHHHHHHHHHTCSBTTBCCCSEEEEETTE
T ss_pred cCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccC-----HHHHHHHHHHHHHhcCCCCCceEEEEEEECCE
Confidence 478999999999999999999864 468899999865432 45678899999988 69999999999999999
Q ss_pred eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCC-CCeEEeeccCcee
Q 001253 883 NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDK-FEAHVGDFGLAKV 961 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~-~~~kl~DfG~a~~ 961 (1114)
.|+||||+++|+|.++++ .+++.++..++.|++.||+|||++ ||+||||||+|||++.+ +.+||+|||+|+.
T Consensus 95 ~~lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~ 167 (361)
T 4f9c_A 95 VVIAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFGLAQG 167 (361)
T ss_dssp EEEEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EEEEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCCCCcc
Confidence 999999999999999995 489999999999999999999999 99999999999999876 7999999999986
Q ss_pred cCCCCC---------------------------CccccccccccccCccccccC-CCCcccchHHHHHHHHHHHhCCCCC
Q 001253 962 IDMPQS---------------------------KSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSYGVVLLELLTGRAPV 1013 (1114)
Q Consensus 962 ~~~~~~---------------------------~~~~~~~g~~~y~aPE~~~~~-~~~~~~DvwslGvil~el~tg~~p~ 1013 (1114)
...... ....+.+||+.|||||++.+. .|+.++||||+||++|||++|+.||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf 247 (361)
T 4f9c_A 168 THDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPF 247 (361)
T ss_dssp CTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred cCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCC
Confidence 543211 122345799999999999875 4899999999999999999999999
Q ss_pred CCCC
Q 001253 1014 QPLD 1017 (1114)
Q Consensus 1014 ~~~~ 1017 (1114)
....
T Consensus 248 ~~~~ 251 (361)
T 4f9c_A 248 YKAS 251 (361)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 6544
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.5e-43 Score=413.28 Aligned_cols=421 Identities=23% Similarity=0.215 Sum_probs=216.5
Q ss_pred cccccceeccccccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCcccCccccccccccccchhh
Q 001253 197 LKRLKSFRAGQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLA 276 (1114)
Q Consensus 197 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 276 (1114)
.+.|++|++++|.+ +.+|.+++++++|++|++++|+++|.+|.+++.+++|+.+++.+|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 46777777777777 57777777777777777777777777777777776665544444321 3455566
Q ss_pred cccccccCCchhhhcCCCccceeeecccccccccCccccccccccccccccccCCCCCchhhhcccccceeecccccccC
Q 001253 277 LYDNKQVGQLPKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTG 356 (1114)
Q Consensus 277 Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 356 (1114)
+++|.+.+ +|.. .++|++|++++|.+++ +|.. .++|++|++++|++.+. +.. .++|++|++++|++++
T Consensus 78 l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 78 LNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp CTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS
T ss_pred ecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC
Confidence 66665444 2221 2566677777776664 5543 25666777777766642 211 1467777777777775
Q ss_pred cccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccc
Q 001253 357 VIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICR 436 (1114)
Q Consensus 357 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 436 (1114)
+| .|..+++|++|++++|++++ +|..+ .+|++|++++|++.+ +| .++.+++|++|++++|++++ +|...
T Consensus 146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~-- 214 (454)
T 1jl5_A 146 -LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP-- 214 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC--
T ss_pred -Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc--
Confidence 44 47777777777777777774 44332 467777777777765 34 46777777777777777764 33322
Q ss_pred cCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEE
Q 001253 437 NTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLH 516 (1114)
Q Consensus 437 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 516 (1114)
++|++|++++|+++ .+|. +..+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. +++|++|+
T Consensus 215 -~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 283 (454)
T 1jl5_A 215 -LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLD 283 (454)
T ss_dssp -TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred -CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEE
Confidence 46777777777776 4553 6677777777777777763 4432 3567777777777764 4433 36677777
Q ss_pred ecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCC
Q 001253 517 LSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSG 596 (1114)
Q Consensus 517 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 596 (1114)
+++|++++. |.. .++|++|++++|++++ ++.. .++|+.|++++|++++ +|.. +++|++|++++|+++
T Consensus 284 ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~- 350 (454)
T 1jl5_A 284 VSENIFSGL-SEL---PPNLYYLNASSNEIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA- 350 (454)
T ss_dssp CCSSCCSEE-SCC---CTTCCEEECCSSCCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-
T ss_pred CcCCccCcc-cCc---CCcCCEEECcCCcCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-
Confidence 777777652 211 1467777777777763 2211 1467777777777764 4443 466777777777777
Q ss_pred cccccccccccccccccCCCcCCC--CCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCccccc--CCC
Q 001253 597 SIPVQIGNLSRLTELQMGGNSFSG--GIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSG--EIP 672 (1114)
Q Consensus 597 ~~p~~~~~l~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g--~ip 672 (1114)
.+|. .+++|++|++++|++++ .+|.++.. |+.|++.|.+|.. +++|++||+++|+++| .+|
T Consensus 351 ~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~---------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 351 EVPE---LPQNLKQLHVEYNPLREFPDIPESVED---------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE---------EECCC--------------------------------
T ss_pred cccc---hhhhccEEECCCCCCCcCCCChHHHHh---------hhhcccccccccc---cCcCCEEECCCCcCCccccch
Confidence 3554 35667777777777776 56655433 3346666666653 3667788888888877 666
Q ss_pred CccccccccceEEeccCcccCCCCC
Q 001253 673 GSFVNLSSLLGCNFSYNNLTGPIPS 697 (1114)
Q Consensus 673 ~~~~~l~~l~~l~ls~N~l~g~ip~ 697 (1114)
.+ ++.|.+++|.+.+.+|.
T Consensus 416 ~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 416 ES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp -------------------------
T ss_pred hh------HhheeCcCcccCCcccc
Confidence 54 34456677777776553
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.6e-43 Score=392.92 Aligned_cols=295 Identities=28% Similarity=0.437 Sum_probs=262.9
Q ss_pred CCCcchHHHHHHhHhhccCCCCCCCCCCCCCCCCCc--cceEEEecCCCccEEEEEeecCCCcCc--ccCCCCCCCCccC
Q 001253 30 GLVNIEGQILLLIKSKLVDNSNYLGNWNPNDSTPCG--WIGVNCTTNDFGAVVFSLNLTKMNLSG--YLSPNIGGLVHLT 105 (1114)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~C~--w~gv~C~~~~~~~~v~~l~l~~~~l~g--~~~~~l~~l~~L~ 105 (1114)
.|.++|++||++||+++.||. .+++|+.. .+||. |.||+|+.....++|+.|+|+++++.| .+|+.++++++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~-~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCC-CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 588999999999999998776 78999864 56898 999999764333679999999999999 8999999999999
Q ss_pred EEEecC-CcccCCCCcccCCCCCCCEEEccCCCcccccccccccccccceeccccccccCCCCcccccCcccchhhhccc
Q 001253 106 ALDLSF-NQLSRNIPKEIGNCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSN 184 (1114)
Q Consensus 106 ~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n 184 (1114)
+|+|++ |++.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|++++.+|..+.++++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccc-cccceeccccccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCcccCccc
Q 001253 185 NISGSLPPTLGNLK-RLKSFRAGQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIP 263 (1114)
Q Consensus 185 ~i~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 263 (1114)
++++.+|..+++++ +|++|++++|.+++.+|..+..++ |++|+|++|++++.+|..++.+++|+.|+|++|++++.+|
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC
Confidence 99989999999988 899999999999988998888887 9999999999988888889999999999999999987666
Q ss_pred cccccccccchhhcccccccCCchhhhcCCCccceeeecccccccccCcccccccccccccccccc
Q 001253 264 KELGNCTSLETLALYDNKQVGQLPKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENS 329 (1114)
Q Consensus 264 ~~l~~l~~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~ 329 (1114)
. +..+++|++|++++|.+.+.+|..|..+++|++|+|++|++++.+|.. +.+++|+.+++++|.
T Consensus 239 ~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp G-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred c-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 5 778888888888888888888888888888888888888888877775 777778888887776
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.4e-42 Score=405.76 Aligned_cols=425 Identities=23% Similarity=0.249 Sum_probs=206.2
Q ss_pred CCCCCCEEEccCCCcccccccccccccccceeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccce
Q 001253 124 NCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSF 203 (1114)
Q Consensus 124 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L 203 (1114)
..++|++|++++|.+ +.+|.+|+++++|++|++++|++.|.+|.+++++++|+.+++..|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 357788888888888 57888888888888888888888888888888888887777776542 456777
Q ss_pred eccccccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCcccCccccccccccccchhhccccccc
Q 001253 204 RAGQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQV 283 (1114)
Q Consensus 204 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~ 283 (1114)
++++|.+++ +|.. .++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|++|++++|.+.
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 777777764 3332 2567777777777775 5543 3667777777777764 2221 145666666666555
Q ss_pred CCchhhhcCCCccceeeecccccccccCccccccccccccccccccCCCCCchhhhcccccceeecccccccCccccccc
Q 001253 284 GQLPKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELT 363 (1114)
Q Consensus 284 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 363 (1114)
+ +| .|+.+++|++|++++|++++ +|..+ . +|+.|++++|++++. | .+.
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~------------------------~L~~L~L~~n~l~~l-~-~~~ 192 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---P------------------------SLEFIAAGNNQLEEL-P-ELQ 192 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---T------------------------TCCEEECCSSCCSSC-C-CCT
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---c------------------------cccEEECcCCcCCcC-c-ccc
Confidence 4 44 35566666666666666553 34322 2 444555555555442 2 345
Q ss_pred ccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCcccee
Q 001253 364 TLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFL 443 (1114)
Q Consensus 364 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L 443 (1114)
.+++|++|++++|++++ +|... ++|++|++++|.+. .+|. ++.+++|++|++++|++++ +|.. .++|++|
T Consensus 193 ~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L 262 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEAL 262 (454)
T ss_dssp TCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEE
T ss_pred CCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEE
Confidence 55555555555555553 22211 35555555555555 3332 5555566666666666553 2321 2456666
Q ss_pred eeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCcccccccc-ccCcEEEecCcee
Q 001253 444 NLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNC-NALQRLHLSDNYF 522 (1114)
Q Consensus 444 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l 522 (1114)
++++|++++ +|.. .++|++|++++|++++. |.. .++|+.|++++|++++ ++ .+ ++|++|++++|++
T Consensus 263 ~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 263 NVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKL 329 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCC
T ss_pred ECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcc
Confidence 666666664 3332 25666666666666642 111 1466777777777763 22 22 4677777777777
Q ss_pred ccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccC--CCchhhhhcccCCeeeccCccCCCcccc
Q 001253 523 TGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVG--ALPREIGSLFQLELLKLSENELSGSIPV 600 (1114)
Q Consensus 523 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 600 (1114)
++ +|.. +++|++|++++|+++ .+|. .+++|+.|++++|++++ .+|.+++. |+.|.+.|.+|.
T Consensus 330 ~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~ 393 (454)
T 1jl5_A 330 IE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPE 393 (454)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-------
T ss_pred cc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhccccccccc
Confidence 75 4443 467777777777777 4565 35777777777777776 56655543 234566666665
Q ss_pred cccccccccccccCCCcCCC--CCChhhcCcchhhHHhhcccccccccCCccccc
Q 001253 601 QIGNLSRLTELQMGGNSFSG--GIPAELGSLSSLQIALNLSYNNLSGLIPPELGN 653 (1114)
Q Consensus 601 ~~~~l~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~ 653 (1114)
. +++|+.|++++|++++ .+|.++. .|.+++|.+.+.+|.+...
T Consensus 394 ~---~~~L~~L~ls~N~l~~~~~iP~sl~-------~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 394 L---PQNLKQLHVETNPLREFPDIPESVE-------DLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp -------------------------------------------------------
T ss_pred c---cCcCCEEECCCCcCCccccchhhHh-------heeCcCcccCCccccCHHH
Confidence 3 4678888888888876 6665432 3556777777776655544
No 46
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=1.3e-42 Score=418.49 Aligned_cols=251 Identities=26% Similarity=0.340 Sum_probs=211.1
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.+.||+|+||+||+|+.+ +|+.||+|++..... ...+.+.+|+.+++.++|||||+++++|.+++..|+||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~---~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~ 233 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHE---SDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIY 233 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH---HHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccch---hhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEE
Confidence 68999999999999999999986 799999999975432 33567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCC--CCeEEeeccCceecCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDK--FEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~--~~~kl~DfG~a~~~~~~ 965 (1114)
|||+||+|.+++......+++.++..++.||+.||+|||++ +|+||||||+|||++.+ +.+||+|||+|+.+.
T Consensus 234 E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~-- 308 (573)
T 3uto_A 234 EFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLD-- 308 (573)
T ss_dssp ECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECC--
T ss_pred eecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEcc--
Confidence 99999999999986667899999999999999999999999 99999999999999854 899999999999865
Q ss_pred CCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc
Q 001253 966 QSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 966 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
........+||+.|||||++.+..|+.++||||+||++|||++|+.||.+.. ..+..+..... .+ .
T Consensus 309 ~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~----~~~~~~~i~~~-~~---------~ 374 (573)
T 3uto_A 309 PKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEN----DDETLRNVKSC-DW---------N 374 (573)
T ss_dssp TTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS----HHHHHHHHHTT-CC---------C
T ss_pred CCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC----HHHHHHHHHhC-CC---------C
Confidence 3344456789999999999999999999999999999999999999997433 22223222221 11 1
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
............+.+||.+||+.||.+|||+.|+++
T Consensus 375 ~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 375 MDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp CCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 111111223346789999999999999999999876
No 47
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=1.1e-41 Score=385.97 Aligned_cols=290 Identities=41% Similarity=0.757 Sum_probs=238.7
Q ss_pred CCCCCCHHHHHHHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEE
Q 001253 795 PKEGFTFKDLVVATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLY 874 (1114)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~ 874 (1114)
....+++.++....++|++.+.||+|+||+||+|+.++|+.||||++........ ...+.+|+.+++.++||||++++
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~--~~~~~~e~~~l~~l~h~~iv~~~ 93 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGG--ELQFQTEVEMISMAVHRNLLRLR 93 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----C--CCHHHHHHHGGGTCCCTTBCCCC
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchH--HHHHHHHHHHHHhccCCCccceE
Confidence 3456888999999999999999999999999999988899999999976543322 23588999999999999999999
Q ss_pred eEEEecCceEEEEecCCCCCHHHHhccCC---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCe
Q 001253 875 GFCYHQGSNLLMYEYMARGSLGELLHGAS---STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEA 951 (1114)
Q Consensus 875 ~~~~~~~~~~lv~E~~~~gsL~~~l~~~~---~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~ 951 (1114)
+++...+..++||||+++|+|.++++... ..+++..+..++.|++.||+|||+.+.++|+||||||+||+++.++.+
T Consensus 94 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~ 173 (326)
T 3uim_A 94 GFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEA 173 (326)
T ss_dssp EEECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCE
T ss_pred EEEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCE
Confidence 99999999999999999999999997543 359999999999999999999999877799999999999999999999
Q ss_pred EEeeccCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCC----CCCCCCHHHHHH
Q 001253 952 HVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQP----LDQGGDLVTWVR 1027 (1114)
Q Consensus 952 kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~----~~~~~~~~~~~~ 1027 (1114)
||+|||+++..............||+.|+|||++.+..++.++||||+||++|||++|+.||.. .........|+.
T Consensus 174 kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 253 (326)
T 3uim_A 174 VVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVK 253 (326)
T ss_dssp EECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHT
T ss_pred EeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHH
Confidence 9999999997754444445556799999999999988999999999999999999999999962 223334445544
Q ss_pred HHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1028 NFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
........ ....+.... ..........+.+++.+||+.||.+|||++|+++.|++....
T Consensus 254 ~~~~~~~~-~~~~~~~~~--~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~~~ 312 (326)
T 3uim_A 254 GLLKEKKL-EALVDVDLQ--GNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLA 312 (326)
T ss_dssp TTTSSCCS-TTSSCTTCT--TSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSSCS
T ss_pred HHhhchhh-hhhcChhhc--cccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcchh
Confidence 43333222 222222222 344566778899999999999999999999999999985433
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.1e-42 Score=408.05 Aligned_cols=385 Identities=22% Similarity=0.232 Sum_probs=256.6
Q ss_pred eeeecccccccccCccccccccccccccccccCCCCCchhhhcccccceeecccccccCcc-cccccccccCCEEEcccc
Q 001253 298 YLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVI-PVELTTLKNLTKLDLSIN 376 (1114)
Q Consensus 298 ~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N 376 (1114)
.++.+++.++ .+|. +. +++++|++++|.+.+..|..+.++++|++|++++|.+.+.+ +..|..+++|++|+|++|
T Consensus 14 ~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4555555554 4444 21 45666666666666555556666666666666666654332 345556666666666666
Q ss_pred cccccccCccccccceeeeeccCCcccCCCCC--CCCcCccceEEEeecccccCCCCcc-ccccCccceeeeccCCccCC
Q 001253 377 SLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQ--RLGAYSQLWVVDLSDNHLTGKIPRH-ICRNTSLIFLNLETNKLTGS 453 (1114)
Q Consensus 377 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~L~~L~Ls~N~l~~~ 453 (1114)
++++..|..|..+++|++|++++|++.+..+. .+..+++|++|+|++|++++..|.. +..+++|++|++++|++++.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 66655555566666666666666665543322 2555555556666655555554443 45555555555555555555
Q ss_pred cCcccccC--CcceEEeeccceeeccCCchh--------hccccccEeecccccCCCCcccccccc---ccCcEEEecCc
Q 001253 454 IPTGVTRC--KSLVQLRLGGNSFTGSFPSDL--------CKLANLSTVELDQNQFSGPIPTEIGNC---NALQRLHLSDN 520 (1114)
Q Consensus 454 ~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~--------~~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~Ls~N 520 (1114)
.+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|++++..|..+..+ ++|+.|++++|
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 55555444 455555555555553333221 133445555555555544444444332 44444554444
Q ss_pred eeccCCCccccCCCCcceeecccccccccccccccc--cccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcc
Q 001253 521 YFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFS--CKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSI 598 (1114)
Q Consensus 521 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 598 (1114)
.+.+... ..+.+.+..+..+.. .++|+.|++++|++++.+|..++.+++|++|+|++|++++..
T Consensus 250 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 250 YNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 4332110 011122112222222 368999999999999999999999999999999999999888
Q ss_pred cccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccccc
Q 001253 599 PVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNL 678 (1114)
Q Consensus 599 p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l 678 (1114)
|..|.++++|++|+|++|++++..|..+..+++|+ .|+|++|++++..|..|+.+++|++|+|++|+|++.++..|..+
T Consensus 316 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE-VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC-EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhHhcCcccCCEEECCCCccCCcChhHhcCcccCC-EEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 99999999999999999999988899999999999 79999999999999999999999999999999999888889999
Q ss_pred cccceEEeccCcccCCCCCcccc
Q 001253 679 SSLLGCNFSYNNLTGPIPSSQTF 701 (1114)
Q Consensus 679 ~~l~~l~ls~N~l~g~ip~~~~~ 701 (1114)
++|+.|++++|+++|.+|.-..+
T Consensus 395 ~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp TTCCEEECCSSCBCCCTTTTHHH
T ss_pred CcccEEEccCCCcccCCCcchHH
Confidence 99999999999999999965444
No 49
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.2e-41 Score=401.10 Aligned_cols=364 Identities=18% Similarity=0.211 Sum_probs=187.5
Q ss_pred ccccEEEecCCcccCccccccccccccchhhcccccccCCc-hhhhcCCCccceeeecccccccccCccccccccccccc
Q 001253 246 KYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQVGQL-PKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEID 324 (1114)
Q Consensus 246 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 324 (1114)
++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ +..|..+++|++|+|++|++.+..|..++.+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 34444444444444444444555555555555555444333 23345555555555555555544455555555555555
Q ss_pred cccccCCCCCchh--hhcccccceeecccccccCccccc-ccccccCCEEEcccccccccccCccccc--cceeeeeccC
Q 001253 325 FSENSLIGEIPVE--LSKILGLELLYLFENKLTGVIPVE-LTTLKNLTKLDLSINSLTGTIPLGFQYL--TNLIMLQLFD 399 (1114)
Q Consensus 325 ls~N~l~~~~~~~--l~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~ 399 (1114)
+++|.+.+.++.. +..+++|+.|+|++|++++..|.. +..+++|++|++++|.+++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 5555554433333 555556666666666666555544 5666666666666666666666655554 4566666666
Q ss_pred CcccCCCCCCC--------CcCccceEEEeecccccCCCCcccccc---CccceeeeccCCccCCcCcccccCCcceEEe
Q 001253 400 NSLVGGIPQRL--------GAYSQLWVVDLSDNHLTGKIPRHICRN---TSLIFLNLETNKLTGSIPTGVTRCKSLVQLR 468 (1114)
Q Consensus 400 N~l~~~~~~~~--------~~l~~L~~L~Ls~N~l~~~~~~~~~~~---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 468 (1114)
|.+.+..+..+ ..+++|++|++++|++++..|..+... ++|+.|++++|.+.+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------- 255 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-------------- 255 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------
Confidence 66655444332 234566666666666665555554443 55566666655544321
Q ss_pred eccceeeccCCchhhcc--ccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccc
Q 001253 469 LGGNSFTGSFPSDLCKL--ANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFL 546 (1114)
Q Consensus 469 L~~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 546 (1114)
+..+.+.+..+..+..+ ++|++|++++|++++.+|..+..+++|++|+|++|++++..|..|.++++|++|+|++|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 11112222222222222 3455555555555555555555555555555555555555555555555555555555555
Q ss_pred cccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCC
Q 001253 547 TGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIP 623 (1114)
Q Consensus 547 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 623 (1114)
++..|..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++..|
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 54444444555555555555555554445555555555555555555554333344455555555555555544433
No 50
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=1.5e-40 Score=375.62 Aligned_cols=282 Identities=38% Similarity=0.635 Sum_probs=231.4
Q ss_pred CHHHHHHHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe
Q 001253 800 TFKDLVVATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH 879 (1114)
Q Consensus 800 ~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 879 (1114)
.+.++....++|+..+.||+|+||+||+|++++|+.||||++..... ...+.+.+|+.+++.++||||+++++++.+
T Consensus 30 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 106 (321)
T 2qkw_B 30 PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESS---QGIEEFETEIETLSFCRHPHLVSLIGFCDE 106 (321)
T ss_dssp CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCS---SHHHHHHHHHHGGGSCCCTTBCCEEEECCC
T ss_pred cHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccCh---HHHHHHHHHHHHHHhCCCCCEeeEEEEEcC
Confidence 33444456789999999999999999999988899999999875533 235678999999999999999999999999
Q ss_pred cCceEEEEecCCCCCHHHHhccCC---CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeec
Q 001253 880 QGSNLLMYEYMARGSLGELLHGAS---STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDF 956 (1114)
Q Consensus 880 ~~~~~lv~E~~~~gsL~~~l~~~~---~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df 956 (1114)
++..++||||+++|+|.+++.... ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 107 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Df 183 (321)
T 2qkw_B 107 RNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDF 183 (321)
T ss_dssp TTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCC
T ss_pred CCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeec
Confidence 999999999999999999997543 3589999999999999999999998 9999999999999999999999999
Q ss_pred cCceecCCCC-CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCC--CCHHHHHHHHHhcC
Q 001253 957 GLAKVIDMPQ-SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQG--GDLVTWVRNFIRNN 1033 (1114)
Q Consensus 957 G~a~~~~~~~-~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~--~~~~~~~~~~~~~~ 1033 (1114)
|+++...... ........||+.|+|||++.+..++.++||||+|+++|||++|+.||...... .....|........
T Consensus 184 g~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (321)
T 2qkw_B 184 GISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNG 263 (321)
T ss_dssp TTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTT
T ss_pred ccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccc
Confidence 9998654222 22234456999999999999999999999999999999999999999754432 23444544433333
Q ss_pred CcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1034 SLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
... ...++... ..........+.+++.+||+.||++|||++|+++.|+.+.+..
T Consensus 264 ~~~-~~~~~~~~--~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~ 317 (321)
T 2qkw_B 264 QLE-QIVDPNLA--DKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ 317 (321)
T ss_dssp CCC-SSSSSSCT--TCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred cHH-HhcChhhc--cccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhcc
Confidence 222 22233222 3345667788999999999999999999999999999986543
No 51
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=371.96 Aligned_cols=260 Identities=24% Similarity=0.423 Sum_probs=214.0
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.++||+|+||+||+|+++ +++.||+|++... .....+.+.+|+.++++++||||+++++++.+++..++|
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~---~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 85 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF---DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFI 85 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC---CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC---CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEE
Confidence 367999999999999999999986 6899999998543 334567899999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++|+|.++++.....+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 86 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 162 (310)
T 3s95_A 86 TEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEK 162 (310)
T ss_dssp EECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC---
T ss_pred EEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceeccccc
Confidence 999999999999987777899999999999999999999999 99999999999999999999999999998764322
Q ss_pred CC-------------ccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCC-HHHHHHHHHhc
Q 001253 967 SK-------------SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGD-LVTWVRNFIRN 1032 (1114)
Q Consensus 967 ~~-------------~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~-~~~~~~~~~~~ 1032 (1114)
.. ......||+.|+|||++.+..++.++||||+|+++|||++|..|+........ ...........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~ 242 (310)
T 3s95_A 163 TQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR 242 (310)
T ss_dssp -----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHH
T ss_pred ccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccc
Confidence 21 11256799999999999999999999999999999999999999875432211 00001111110
Q ss_pred CCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1033 NSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
. .+......+.+++.+||+.||++|||++|+++.|++++..
T Consensus 243 ----------~------~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~ 283 (310)
T 3s95_A 243 ----------Y------CPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMH 283 (310)
T ss_dssp ----------T------CCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ----------c------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence 0 0011123578899999999999999999999999998654
No 52
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=3.1e-40 Score=368.16 Aligned_cols=250 Identities=24% Similarity=0.363 Sum_probs=208.5
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.++||+|+||+||+|++. +|+.||||++....... .+.+.+|+.+++.++||||+++++++..++..++|
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 95 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPK---KELIINEILVMRENKNPNIVNYLDSYLVGDELWVV 95 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSC---HHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccH---HHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEE
Confidence 368999999999999999999964 78999999997654433 56688999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++|+|.+++... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 96 ~e~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 169 (297)
T 3fxz_A 96 MEYLAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE- 169 (297)
T ss_dssp EECCTTCBHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCST-
T ss_pred EECCCCCCHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCc-
Confidence 9999999999999743 689999999999999999999999 9999999999999999999999999999876532
Q ss_pred CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
........||+.|+|||++.+..++.++||||+||++|||++|+.||..... ............. .
T Consensus 170 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~----~~~~~~~~~~~~~-------~--- 235 (297)
T 3fxz_A 170 QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP----LRALYLIATNGTP-------E--- 235 (297)
T ss_dssp TCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHHHHHCSC-------C---
T ss_pred ccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHhCCCC-------C---
Confidence 2334456899999999999999999999999999999999999999964332 2222221111110 0
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
...+......+.+++.+||+.||++|||++|+++
T Consensus 236 -~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 236 -LQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp -CSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -CCCccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 1112223346889999999999999999999976
No 53
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=1.4e-40 Score=365.51 Aligned_cols=261 Identities=22% Similarity=0.370 Sum_probs=216.5
Q ss_pred HhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
..++|++.+.||+|+||+||+|+++++..||+|++...... .+.+.+|+.++++++||||+++++++.+++..++|
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 81 (268)
T 3sxs_A 6 KREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS----EDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIV 81 (268)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBC----HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEE
T ss_pred chhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCc----HHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEE
Confidence 35789999999999999999999998889999999765432 45688999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++++|.+++......+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.+.......
T Consensus 82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~ 158 (268)
T 3sxs_A 82 TEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ 158 (268)
T ss_dssp EECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC
T ss_pred EEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchhh
Confidence 999999999999986666799999999999999999999999 99999999999999999999999999998765443
Q ss_pred CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
........+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||..... .............
T Consensus 159 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~----~~~~~~~~~~~~~---------- 224 (268)
T 3sxs_A 159 YVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTN----SEVVLKVSQGHRL---------- 224 (268)
T ss_dssp EEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCH----HHHHHHHHTTCCC----------
T ss_pred hhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccCh----HHHHHHHHcCCCC----------
Confidence 333344567788999999999899999999999999999999 9999964332 2222221111100
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCC
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQG 1091 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~ 1091 (1114)
..+......+.+++.+||+.||++|||++|+++.|+++..+..
T Consensus 225 ---~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~~k 267 (268)
T 3sxs_A 225 ---YRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREKDK 267 (268)
T ss_dssp ---CCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC---
T ss_pred ---CCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhccC
Confidence 0011122468899999999999999999999999999977643
No 54
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.3e-40 Score=366.17 Aligned_cols=258 Identities=24% Similarity=0.382 Sum_probs=216.6
Q ss_pred hcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
.++|++.+.||+|+||+||+|++.+++.||+|++...... .+++.+|+.++++++||||+++++++.+++..++||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 84 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS----EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVF 84 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEE
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEecccccC----HHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEE
Confidence 4689999999999999999999988999999999765432 456889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+++++|.++++.....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++.......
T Consensus 85 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 161 (269)
T 4hcu_A 85 EFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY 161 (269)
T ss_dssp ECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred EeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEecccccccccccccc
Confidence 99999999999987777899999999999999999999999 999999999999999999999999999986543322
Q ss_pred CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 968 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
.......+++.|+|||++.+..++.++||||+|+++|||++ |+.||.... .............
T Consensus 162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~----~~~~~~~~~~~~~------------ 225 (269)
T 4hcu_A 162 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS----NSEVVEDISTGFR------------ 225 (269)
T ss_dssp HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC----HHHHHHHHHTTCC------------
T ss_pred ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCC----HHHHHHHHhcCcc------------
Confidence 23344567889999999999999999999999999999999 999996433 2222222221100
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
...+......+.+++.+||+.||++|||++|+++.|+++...
T Consensus 226 -~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 226 -LYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp -CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -CCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 011111234688999999999999999999999999998764
No 55
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=4.4e-40 Score=373.26 Aligned_cols=276 Identities=20% Similarity=0.244 Sum_probs=226.5
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 885 (1114)
.++|++.+.||+|+||+||+|+.. +|+.||||++..... .+.+.+|+.+++++ +||||+++++++..++..++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~l 82 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR-----APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAM 82 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS-----SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc-----hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEE
Confidence 467999999999999999999974 789999999875543 23477899999999 99999999999999999999
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCC-----eEEeeccCce
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFE-----AHVGDFGLAK 960 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~-----~kl~DfG~a~ 960 (1114)
||||+ +++|.+++......+++..+..++.|+++||+|||+. +|+||||||+||+++.++. +||+|||+++
T Consensus 83 v~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~ 158 (330)
T 2izr_A 83 VLELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK 158 (330)
T ss_dssp EEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCE
T ss_pred EEEeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccce
Confidence 99999 8899999987667899999999999999999999999 9999999999999998887 9999999998
Q ss_pred ecCCCCCC------ccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCC
Q 001253 961 VIDMPQSK------SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNS 1034 (1114)
Q Consensus 961 ~~~~~~~~------~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~ 1034 (1114)
.+...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||..... .+..+.........
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~-~~~~~~~~~i~~~~- 236 (330)
T 2izr_A 159 EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKA-DTLKERYQKIGDTK- 236 (330)
T ss_dssp ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC-SSHHHHHHHHHHHH-
T ss_pred eeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCcccccc-ccHHHHHHHHHhhh-
Confidence 76433321 12456899999999999999999999999999999999999999986543 33333322211110
Q ss_pred cccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCcccccCCCCCc
Q 001253 1035 LVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFEFSPMDHDSD 1103 (1114)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~~~~~~~~~~ 1103 (1114)
..............+.+++.+||+.||.+||+++++++.|+++..+.+......+||+..
T Consensus 237 ---------~~~~~~~~~~~~p~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~~~~~~~~~dw~~~ 296 (330)
T 2izr_A 237 ---------RATPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGK 296 (330)
T ss_dssp ---------HHSCHHHHTTTCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTCCCSCCCTTTTS
T ss_pred ---------ccCCHHHHhccChHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCccCCCC
Confidence 000000000001278899999999999999999999999999999998888889999843
No 56
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=3.7e-39 Score=361.95 Aligned_cols=284 Identities=35% Similarity=0.585 Sum_probs=232.7
Q ss_pred CCCCHHHHHHHhcCCcCC------ceecccCCeEEEEEEeCCCcEEEEEEecccCC-CChhhHHHHHHHHHHHhcCCCCc
Q 001253 797 EGFTFKDLVVATDNFDER------FVIGRGACGTVYRAVLRTGHTVAVKKLASNRE-GNNNVDNSFRAEILTLGKIRHRN 869 (1114)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~------~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~-~~~~~~~~~~~E~~~l~~l~h~n 869 (1114)
..++++++..++++|... ++||+|+||+||+|+. +++.||||++..... ......+.+.+|+.+++.++|||
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 91 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN 91 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence 457888999999888877 8999999999999997 488999999976543 23344677899999999999999
Q ss_pred eeeEEeEEEecCceEEEEecCCCCCHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC
Q 001253 870 IVKLYGFCYHQGSNLLMYEYMARGSLGELLHGA--SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD 947 (1114)
Q Consensus 870 iv~l~~~~~~~~~~~lv~E~~~~gsL~~~l~~~--~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~ 947 (1114)
|+++++++.+.+..++||||+++|+|.+++... ...+++..+..++.|+++||+|||+. +|+||||||+||++++
T Consensus 92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~ 168 (307)
T 2nru_A 92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILLDE 168 (307)
T ss_dssp BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECT
T ss_pred eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEEcC
Confidence 999999999999999999999999999998632 34689999999999999999999998 9999999999999999
Q ss_pred CCCeEEeeccCceecCCCCCC-ccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 001253 948 KFEAHVGDFGLAKVIDMPQSK-SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWV 1026 (1114)
Q Consensus 948 ~~~~kl~DfG~a~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~ 1026 (1114)
++.+||+|||+++........ ......|++.|+|||++.+ .++.++||||+|+++|+|++|+.||...........+.
T Consensus 169 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~ 247 (307)
T 2nru_A 169 AFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIK 247 (307)
T ss_dssp TCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHH
T ss_pred CCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHH
Confidence 999999999999876432222 2334579999999998765 48899999999999999999999998766555444444
Q ss_pred HHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001253 1027 RNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNR 1088 (1114)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~ 1088 (1114)
+.............+..+ ...+......+.+++.+||+.||.+|||++|+++.|+++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 248 EEIEDEEKTIEDYIDKKM---NDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HHHHTTSCCHHHHSCSSC---SCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHhhhhhhhhhhhccccc---cccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 443333332233323322 23345566789999999999999999999999999999854
No 57
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=8.9e-40 Score=365.34 Aligned_cols=276 Identities=20% Similarity=0.232 Sum_probs=226.2
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 885 (1114)
.++|++.+.||+|+||+||+|+.. +|+.||||++..... .+.+.+|+..++.+ +|++++++++++.+....++
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~l 83 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD-----APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVL 83 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT-----SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc-----cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEE
Confidence 467999999999999999999974 789999999865443 23477899999999 79999999999999999999
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCC-----eEEeeccCce
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFE-----AHVGDFGLAK 960 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~-----~kl~DfG~a~ 960 (1114)
||||+ +++|.++++.....+++..+..++.|+++||+|||+. +|+||||||+||+++.++. +||+|||+++
T Consensus 84 v~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~ 159 (298)
T 1csn_A 84 VIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK 159 (298)
T ss_dssp EEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred EEEec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECcccc
Confidence 99999 8899999987777899999999999999999999998 9999999999999987776 9999999998
Q ss_pred ecCCCCC------CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCC
Q 001253 961 VIDMPQS------KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNS 1034 (1114)
Q Consensus 961 ~~~~~~~------~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~ 1034 (1114)
....... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||........ ...........
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~-~~~~~~~~~~~- 237 (298)
T 1csn_A 160 FYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATN-KQKYERIGEKK- 237 (298)
T ss_dssp ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCH-HHHHHHHHHHH-
T ss_pred ccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhcccc-HHHHHHHHhhc-
Confidence 7654332 123456799999999999999999999999999999999999999986543322 22221111100
Q ss_pred cccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCcccccCCCCC
Q 001253 1035 LVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFEFSPMDHDS 1102 (1114)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~~~~~~~~~ 1102 (1114)
. .... ..........+.+++.+||+.||++||++++|++.|+++..+.+.....++||+.
T Consensus 238 ~-----~~~~---~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~~~~~~~dw~~ 297 (298)
T 1csn_A 238 Q-----STPL---RELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENFDWNL 297 (298)
T ss_dssp H-----HSCH---HHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTCCSCSCCGGGC
T ss_pred c-----CccH---HHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCCCCccccCC
Confidence 0 0000 0000112346889999999999999999999999999999999999999999964
No 58
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.5e-40 Score=368.49 Aligned_cols=266 Identities=24% Similarity=0.335 Sum_probs=213.7
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|++. +++.||+|++...........+.+.+|+..+++++||||+++++++.+++..|+|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 368999999999999999999976 7899999999877666666677899999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++++|.+++... ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 90 ~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 165 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESH-GPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS 165 (294)
T ss_dssp EECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC----
T ss_pred EeCCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCcccccccc
Confidence 9999999999999743 4689999999999999999999999 99999999999999999999999999998765433
Q ss_pred CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
........||+.|+|||.+.+..++.++||||+|+++|||++|+.||.... .............. ...
T Consensus 166 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~----~~~~~~~~~~~~~~-----~~~--- 233 (294)
T 4eqm_A 166 LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGET----AVSIAIKHIQDSVP-----NVT--- 233 (294)
T ss_dssp ---------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSC----HHHHHHHHHSSCCC-----CHH---
T ss_pred ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC----hHHHHHHHhhccCC-----Ccc---
Confidence 334445679999999999999999999999999999999999999996433 22222222221100 000
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCC-CHHHHHHHHHhhhccC
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRP-TMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RP-s~~evl~~L~~i~~~~ 1090 (1114)
..........+.+++.+|++.||.+|| +++++.+.|+++....
T Consensus 234 -~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~ 277 (294)
T 4eqm_A 234 -TDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHEN 277 (294)
T ss_dssp -HHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSS
T ss_pred -hhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhc
Confidence 001111234688999999999999998 9999999999985543
No 59
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=2.2e-40 Score=371.31 Aligned_cols=266 Identities=32% Similarity=0.449 Sum_probs=207.8
Q ss_pred HHHHHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc
Q 001253 803 DLVVATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS 882 (1114)
Q Consensus 803 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 882 (1114)
++.+..++|++.++||+|+||+||+|+++ |+.||||++..... .....+.+.+|+.++++++||||+++++++.+.+.
T Consensus 31 ~~~i~~~~y~i~~~lG~G~~g~V~~~~~~-~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 108 (309)
T 3p86_A 31 DMDIPWCDLNIKEKIGAGSFGTVHRAEWH-GSDVAVKILMEQDF-HAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPN 108 (309)
T ss_dssp -CBCCGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEECCCCC-SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTC
T ss_pred cccCChhHceeeeEeecCCCeEEEEEEEC-CCcEEEEEecCCCC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCc
Confidence 33455688999999999999999999885 88999999976543 33445678899999999999999999999999999
Q ss_pred eEEEEecCCCCCHHHHhccCCC--CCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEecCCCCCCeEECCCCCeEEeeccC
Q 001253 883 NLLMYEYMARGSLGELLHGASS--TLDWQTRFMIALGAAEGLSYLHHDCKPR--IFHRDIKSNNILLDDKFEAHVGDFGL 958 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~~--~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~Nill~~~~~~kl~DfG~ 958 (1114)
.++||||+++|+|.++++.... .+++..+..++.|+++||+|||+. + |+||||||+||+++.++.+||+|||+
T Consensus 109 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~ 185 (309)
T 3p86_A 109 LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDFGL 185 (309)
T ss_dssp CEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCCC-
T ss_pred eEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCCCC
Confidence 9999999999999999985432 489999999999999999999998 8 99999999999999999999999999
Q ss_pred ceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccc
Q 001253 959 AKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSG 1038 (1114)
Q Consensus 959 a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1114)
++..... ........||+.|+|||++.+..++.++||||+||++|||++|+.||..... .+..........
T Consensus 186 a~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~----~~~~~~~~~~~~---- 256 (309)
T 3p86_A 186 SRLKAST-FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNP----AQVVAAVGFKCK---- 256 (309)
T ss_dssp -----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCH----HHHHHHHHHSCC----
T ss_pred Ccccccc-ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHhcCC----
Confidence 9864322 2223456799999999999999999999999999999999999999975432 222222111110
Q ss_pred cccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1039 MLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
. ...+......+.+++.+||+.||++|||++|+++.|+++.+..
T Consensus 257 ----~----~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~ 300 (309)
T 3p86_A 257 ----R----LEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA 300 (309)
T ss_dssp ----C----CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC--
T ss_pred ----C----CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhC
Confidence 0 1111222346889999999999999999999999999987653
No 60
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=8e-40 Score=376.23 Aligned_cols=260 Identities=25% Similarity=0.410 Sum_probs=213.5
Q ss_pred hcCCcCCceecccCCeEEEEEEeC--------CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR--------TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCY 878 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~--------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~ 878 (1114)
.++|++.+.||+|+||+||+|++. ++..||||+++... .....+.+.+|+.+++++ +||||+++++++.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~ 157 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLGACT 157 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTC--BHHHHHHHHHHHHHHHHSCCCTTBCCEEEEEC
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCc--CHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEc
Confidence 478999999999999999999862 35679999997543 233456789999999999 8999999999999
Q ss_pred ecCceEEEEecCCCCCHHHHhccCC---------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCe
Q 001253 879 HQGSNLLMYEYMARGSLGELLHGAS---------------STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNI 943 (1114)
Q Consensus 879 ~~~~~~lv~E~~~~gsL~~~l~~~~---------------~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Ni 943 (1114)
+.+..|+||||+++|+|.++++... ..+++.++..++.|+++||+|||+. +|+||||||+||
T Consensus 158 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NI 234 (370)
T 2psq_A 158 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNV 234 (370)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGE
T ss_pred cCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhE
Confidence 9999999999999999999997543 3589999999999999999999999 999999999999
Q ss_pred EECCCCCeEEeeccCceecCCCCC-CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCC
Q 001253 944 LLDDKFEAHVGDFGLAKVIDMPQS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGD 1021 (1114)
Q Consensus 944 ll~~~~~~kl~DfG~a~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~ 1021 (1114)
+++.++.+||+|||+++....... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... ..
T Consensus 235 ll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~-~~ 313 (370)
T 2psq_A 235 LVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV-EE 313 (370)
T ss_dssp EECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG-GG
T ss_pred EECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCH-HH
Confidence 999999999999999987653322 22334567889999999999999999999999999999999 9999975432 12
Q ss_pred HHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1022 LVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
.... +..+.. ...+......+.+++.+||+.||++||++.|+++.|+++...
T Consensus 314 ~~~~----~~~~~~------------~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~ 365 (370)
T 2psq_A 314 LFKL----LKEGHR------------MDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL 365 (370)
T ss_dssp HHHH----HHTTCC------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHH----HhcCCC------------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 2211 111110 111122334688999999999999999999999999998653
No 61
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=1.2e-40 Score=369.27 Aligned_cols=261 Identities=22% Similarity=0.347 Sum_probs=214.5
Q ss_pred HHHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceE
Q 001253 805 VVATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 805 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 884 (1114)
.+..++|++.+.||+|+||+||+|+++++..||+|++...... .+++.+|+.++++++||||+++++++.+.+..+
T Consensus 20 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 95 (283)
T 3gen_A 20 EIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS----EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIF 95 (283)
T ss_dssp BCCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred cCCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCC----HHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeE
Confidence 3456789999999999999999999998889999999765432 456889999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCC
Q 001253 885 LMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDM 964 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~ 964 (1114)
+||||+++++|.+++......+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 96 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 172 (283)
T 3gen_A 96 IITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD 172 (283)
T ss_dssp EEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCC
T ss_pred EEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccccccccc
Confidence 99999999999999986566899999999999999999999999 999999999999999999999999999986543
Q ss_pred CCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCccccccccc
Q 001253 965 PQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDAR 1043 (1114)
Q Consensus 965 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
..........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||..... ............
T Consensus 173 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~----~~~~~~~~~~~~--------- 239 (283)
T 3gen_A 173 DEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN----SETAEHIAQGLR--------- 239 (283)
T ss_dssp HHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCH----HHHHHHHHTTCC---------
T ss_pred cccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccCh----hHHHHHHhcccC---------
Confidence 32222334457889999999999999999999999999999998 9999975432 222222111100
Q ss_pred ccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1044 LNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1044 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
...+......+.+++.+||+.||++|||++|+++.|+++...
T Consensus 240 ----~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 240 ----LYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp ----CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ----CCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence 001111124688999999999999999999999999998754
No 62
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=2.4e-40 Score=386.08 Aligned_cols=265 Identities=22% Similarity=0.252 Sum_probs=211.9
Q ss_pred HHHHHHHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe
Q 001253 801 FKDLVVATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH 879 (1114)
Q Consensus 801 ~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 879 (1114)
++++....++|++.++||+|+||+||+|+++ +++.||+|++.+.........+.+.+|..++..++||||++++++|.+
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 145 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD 145 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence 3444556789999999999999999999987 578999999975322111223347889999999999999999999999
Q ss_pred cCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCc
Q 001253 880 QGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLA 959 (1114)
Q Consensus 880 ~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a 959 (1114)
++..|+||||+++|+|.+++......+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+|
T Consensus 146 ~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DFGla 222 (437)
T 4aw2_A 146 DNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSC 222 (437)
T ss_dssp SSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcchhhh
Confidence 9999999999999999999987667899999999999999999999998 9999999999999999999999999999
Q ss_pred eecCCCCCCccccccccccccCccccc-----cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCC
Q 001253 960 KVIDMPQSKSMSAIAGSYGYIAPEYAY-----TMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNS 1034 (1114)
Q Consensus 960 ~~~~~~~~~~~~~~~g~~~y~aPE~~~-----~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~ 1034 (1114)
+.............+||+.|+|||++. ...++.++||||+||++|||++|+.||..... .+.........
T Consensus 223 ~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~----~~~~~~i~~~~- 297 (437)
T 4aw2_A 223 LKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESL----VETYGKIMNHK- 297 (437)
T ss_dssp EECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHHHHHTHH-
T ss_pred hhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCCh----hHHHHhhhhcc-
Confidence 876544444445568999999999987 56689999999999999999999999975332 22222221110
Q ss_pred cccccccccccCCCcccHHHHHHHHHHHhhccCCCCCC--CCCHHHHHH
Q 001253 1035 LVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFD--RPTMREVVL 1081 (1114)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~--RPs~~evl~ 1081 (1114)
..... +.........+.+++.+|+..+|++ ||+++|+++
T Consensus 298 -------~~~~~-p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 298 -------ERFQF-PTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp -------HHCCC-CSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred -------ccccC-CcccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 00000 0000112346788999999988888 999998875
No 63
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=368.97 Aligned_cols=250 Identities=22% Similarity=0.352 Sum_probs=198.8
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|++. +|+.||||++........ .+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 9 ~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~--~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv 86 (347)
T 3zgw_A 9 LKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSD--LPRIKTEIEALKNLRHQHICQLYHVLETANKIFMV 86 (347)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC-----CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchH--HHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEE
Confidence 478999999999999999999975 799999999976554322 34688999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++.......
T Consensus 87 ~E~~~gg~L~~~l~~~-~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~ 162 (347)
T 3zgw_A 87 LEYCPGGELFDYIISQ-DRLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNK 162 (347)
T ss_dssp EECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC-----
T ss_pred EeCCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEEEEeccCcccccCCC
Confidence 9999999999999743 4689999999999999999999999 99999999999999999999999999998655443
Q ss_pred CCccccccccccccCccccccCCC-CcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~-~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
.......+||+.|+|||++.+..+ +.++||||+||++|||++|+.||... ......+..... .+ .
T Consensus 163 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~----~~~~~~~~i~~~-~~---------~ 228 (347)
T 3zgw_A 163 DYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDD----NVMALYKKIMRG-KY---------D 228 (347)
T ss_dssp ---------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCS----SHHHHHHHHHHT-CC---------C
T ss_pred CccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC----CHHHHHHHHHcC-CC---------C
Confidence 444556789999999999988775 88999999999999999999999643 223333332221 11 1
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.+......+.+++.+||+.||++|||++|+++
T Consensus 229 ----~p~~~s~~~~~li~~~L~~dP~~Rps~~eil~ 260 (347)
T 3zgw_A 229 ----VPKWLSPSSILLLQQMLQVDPKKRISMKNLLN 260 (347)
T ss_dssp ----CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ----CCCCCCHHHHHHHHHHcccCHhHCcCHHHHhc
Confidence 11112345778999999999999999999986
No 64
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.4e-40 Score=370.49 Aligned_cols=261 Identities=23% Similarity=0.376 Sum_probs=213.1
Q ss_pred hcCCcCCceecccCCeEEEEEEeC----CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR----TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN 883 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 883 (1114)
.++|++.+.||+|+||+||+|+++ .+..||||+++... .....+.+.+|+.++++++||||+++++++.+++..
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 125 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGY--TERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLA 125 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCC
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCcc
Confidence 467999999999999999999985 34569999997543 234456789999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
++||||+++|+|.++++.....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 126 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 202 (325)
T 3kul_A 126 MIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLE 202 (325)
T ss_dssp EEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred EEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCcccccc
Confidence 999999999999999987777899999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCC--ccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 964 MPQSK--SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 964 ~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
..... ......+|+.|+|||++.+..++.++||||+||++|||++ |+.||..... ............
T Consensus 203 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~----~~~~~~~~~~~~------ 272 (325)
T 3kul_A 203 DDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTN----RDVISSVEEGYR------ 272 (325)
T ss_dssp ----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCH----HHHHHHHHTTCC------
T ss_pred cCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCH----HHHHHHHHcCCC------
Confidence 33222 2223456788999999998999999999999999999999 9999964332 222222111100
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
...+......+.+++.+||+.||++|||++|+++.|+++....
T Consensus 273 -------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~ 315 (325)
T 3kul_A 273 -------LPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSP 315 (325)
T ss_dssp -------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSC
T ss_pred -------CCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCc
Confidence 1111223346889999999999999999999999999986643
No 65
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=9.2e-40 Score=368.65 Aligned_cols=249 Identities=23% Similarity=0.356 Sum_probs=208.3
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|++. +|+.||||++...... ....+.+.+|+.+++.++||||+++++++...+..|+|
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 92 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLN-PTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 92 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence 367999999999999999999984 8999999999765443 33456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++|+|.+++... ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 93 ~e~~~~~~L~~~l~~~-~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~-- 166 (328)
T 3fe3_A 93 MEYASGGEVFDYLVAH-GRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTV-- 166 (328)
T ss_dssp ECCCTTCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSS--
T ss_pred EECCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCC--
Confidence 9999999999999743 4689999999999999999999999 999999999999999999999999999986542
Q ss_pred CCccccccccccccCccccccCCCC-cccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVT-EKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~-~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
.......+||+.|+|||++.+..++ .++||||+||++|||++|+.||.... ........... .+ .
T Consensus 167 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~----~~~~~~~i~~~-~~---------~ 232 (328)
T 3fe3_A 167 GGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQN----LKELRERVLRG-KY---------R 232 (328)
T ss_dssp SCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHC-CC---------C
T ss_pred CCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCC----HHHHHHHHHhC-CC---------C
Confidence 2344567899999999999888775 79999999999999999999997432 22222222221 11 1
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.+......+.+++.+||+.||.+|||++|+++
T Consensus 233 ----~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 233 ----IPFYMSTDCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp ----CCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred ----CCCCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 11112346789999999999999999999876
No 66
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=2.4e-40 Score=381.98 Aligned_cols=263 Identities=24% Similarity=0.366 Sum_probs=215.8
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceE
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 884 (1114)
+..++|++.+.||+|+||+||+|+++ +++.||||+++... .....+.+.+|+.++++++||||+++++++..++..+
T Consensus 111 ~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 188 (377)
T 3cbl_A 111 LNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETL--PPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIY 188 (377)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTS--CHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred EchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccC--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcE
Confidence 44578999999999999999999987 78999999987543 2233456889999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCC
Q 001253 885 LMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDM 964 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~ 964 (1114)
+||||+++|+|.++++.....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 189 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~ 265 (377)
T 3cbl_A 189 IVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEAD 265 (377)
T ss_dssp EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTT
T ss_pred EEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCC
Confidence 99999999999999986666799999999999999999999999 999999999999999999999999999986432
Q ss_pred CCCCc-cccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccccc
Q 001253 965 PQSKS-MSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDA 1042 (1114)
Q Consensus 965 ~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1114)
..... .....+++.|+|||++.+..++.++|||||||++|||++ |..||..... ..+...+..+..
T Consensus 266 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~-----~~~~~~~~~~~~------- 333 (377)
T 3cbl_A 266 GVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSN-----QQTREFVEKGGR------- 333 (377)
T ss_dssp SEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCH-----HHHHHHHHTTCC-------
T ss_pred CceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHcCCC-------
Confidence 21111 122346788999999998899999999999999999998 9999975432 222222322111
Q ss_pred cccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1043 RLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1043 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
. ..+......+.+++.+||+.||++|||++++++.|+++.+++
T Consensus 334 -~----~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~~ 376 (377)
T 3cbl_A 334 -L----PCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKRH 376 (377)
T ss_dssp -C----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred -C----CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhhc
Confidence 1 111122346889999999999999999999999999997654
No 67
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.4e-39 Score=361.42 Aligned_cols=275 Identities=20% Similarity=0.257 Sum_probs=221.1
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC--ceE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG--SNL 884 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~ 884 (1114)
.++|++.++||+|+||+||+|+++ +|+.||||++....... ..+.+.+|+.++++++||||+++++++.... ..+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 85 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLR--PVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV 85 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGS--CHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccc--hHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEE
Confidence 367999999999999999999987 68999999997544322 2566789999999999999999999998765 679
Q ss_pred EEEecCCCCCHHHHhccCCC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEE----CCCCCeEEeeccC
Q 001253 885 LMYEYMARGSLGELLHGASS--TLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILL----DDKFEAHVGDFGL 958 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~--~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill----~~~~~~kl~DfG~ 958 (1114)
+||||+++|+|.+++..... .+++.++..++.|+++||+|||+. +|+||||||+||++ +.++.+||+|||+
T Consensus 86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~ 162 (319)
T 4euu_A 86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA 162 (319)
T ss_dssp EEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTT
T ss_pred EEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCC
Confidence 99999999999999975432 489999999999999999999999 99999999999999 7888899999999
Q ss_pred ceecCCCCCCccccccccccccCccccc--------cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHH
Q 001253 959 AKVIDMPQSKSMSAIAGSYGYIAPEYAY--------TMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFI 1030 (1114)
Q Consensus 959 a~~~~~~~~~~~~~~~g~~~y~aPE~~~--------~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~ 1030 (1114)
++..... .......||+.|+|||++. +..++.++||||+||++|||++|+.||............+....
T Consensus 163 a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~ 240 (319)
T 4euu_A 163 ARELEDD--EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKII 240 (319)
T ss_dssp CEECCTT--CCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHH
T ss_pred ceecCCC--CceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHh
Confidence 9876432 2334567999999999886 57789999999999999999999999976655444444554444
Q ss_pred hcCCcc--c---------ccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1031 RNNSLV--S---------GMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1031 ~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
...... . ..+.................+.+++.+||+.||++|||++|+++...+..-+
T Consensus 241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~~~ 310 (319)
T 4euu_A 241 TGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (319)
T ss_dssp HHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHTC-
T ss_pred cCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHhhc
Confidence 322110 0 0011122222334566777899999999999999999999999999876544
No 68
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=2.3e-39 Score=369.71 Aligned_cols=254 Identities=23% Similarity=0.290 Sum_probs=208.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCCh---hhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNN---NVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN 883 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 883 (1114)
.++|++.+.||+|+||+||+|+.+ +|+.||+|++........ ...+.+.+|+.+++.++||||+++++++.+.+..
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 467999999999999999999986 789999999986543221 2356789999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC----CeEEeeccCc
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF----EAHVGDFGLA 959 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~DfG~a 959 (1114)
|+||||+++|+|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+||++++++ .+||+|||++
T Consensus 91 ~lv~e~~~gg~L~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DFG~a 166 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQ-KESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (361)
T ss_dssp EEEEECCCSCBHHHHHTT-CSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCSSC
T ss_pred EEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEecCCc
Confidence 999999999999999974 45799999999999999999999999 999999999999998877 7999999999
Q ss_pred eecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccc
Q 001253 960 KVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGM 1039 (1114)
Q Consensus 960 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1114)
+.... .......+||+.|+|||++.+..++.++||||+||++|+|++|..||.... ........... .+
T Consensus 167 ~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~----~~~~~~~i~~~-~~---- 235 (361)
T 2yab_A 167 HEIED--GVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT----KQETLANITAV-SY---- 235 (361)
T ss_dssp EECCT--TCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS----HHHHHHHHHTT-CC----
T ss_pred eEcCC--CCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHhc-CC----
Confidence 87653 223345679999999999999999999999999999999999999997532 22222222111 11
Q ss_pred ccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1040 LDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.............+.+++.+||..||++|||+.|+++
T Consensus 236 -----~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 236 -----DFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp -----CCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred -----CCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0001111122346889999999999999999999874
No 69
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-39 Score=383.81 Aligned_cols=359 Identities=20% Similarity=0.205 Sum_probs=158.2
Q ss_pred CcccccccccccEEEecCCcccCccccccccccccchhhcccccccCCchhhhcCCCccceeeecccccccccCcccccc
Q 001253 238 IPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQVGQLPKELGSIGSLKYLYIYRNELNGTIPREIGKL 317 (1114)
Q Consensus 238 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 317 (1114)
.+..++.+++|++|++++|.+++. | .++.+++|++|++++|.+.+. | ++.+++|++|++++|++++. | ++.+
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence 333444444444444444444432 2 344444444444444443332 1 44444444444444444431 1 3344
Q ss_pred ccccccccccccCCCCCchhhhcccccceeecccccccCcccccccccccCCEEEcccccccccccCccccccceeeeec
Q 001253 318 SSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQL 397 (1114)
Q Consensus 318 ~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 397 (1114)
++|++|++++|++++. + +..+++|+.|++++|++++. .+..+++|++|++++|...+.+ .+..+++|++|++
T Consensus 106 ~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 4444444444444331 1 33344444444444444432 1344444444444444322222 2333334444444
Q ss_pred cCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeecc
Q 001253 398 FDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGS 477 (1114)
Q Consensus 398 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 477 (1114)
++|++++. | +..+++|+.|++++|++++. .+..+++|++|++++|++++
T Consensus 178 ------------------------s~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 178 ------------------------SFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp ------------------------CSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred ------------------------CCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence 44444331 1 33334444444444444432 14444444444444444443
Q ss_pred CCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeeccccccccccccccccc
Q 001253 478 FPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSC 557 (1114)
Q Consensus 478 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 557 (1114)
+| +..+++|+.|++++|++++.. ++.+++|+.|++++| +|+.|++++|.+.+.+| +..+
T Consensus 227 ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l 285 (457)
T 3bz5_A 227 ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGC 285 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTC
T ss_pred cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--cccc
Confidence 23 444445555555555554332 233444455544443 23344445555444444 2344
Q ss_pred ccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhh
Q 001253 558 KMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALN 637 (1114)
Q Consensus 558 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~ 637 (1114)
++|+.|++++|.+.+.+|. ..++|+.|++++| ++|++|++++|+|++. + ++.++.|+ .|+
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~-~L~ 345 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLK-SLS 345 (457)
T ss_dssp TTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCS-EEE
T ss_pred ccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCc-EEE
Confidence 5555555555554444442 2233444443333 3445555555555542 2 44555554 455
Q ss_pred cccccccccCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCCC
Q 001253 638 LSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPS 697 (1114)
Q Consensus 638 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~ 697 (1114)
+++|+|++. +.|+.|++++|.++|. .++..|..+++++|+++|.||.
T Consensus 346 l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 346 CVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred CCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 555555541 2344555555555554 2344455556666666666654
No 70
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=3.8e-39 Score=361.00 Aligned_cols=266 Identities=27% Similarity=0.409 Sum_probs=210.0
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEE
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 885 (1114)
+..++|++.++||+|+||+||+|+++ ..+|+|+++.... .....+.+.+|+.++++++||||+++++++. .+..++
T Consensus 33 i~~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~l 108 (307)
T 3lb7_A 33 IEASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDP-TPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAI 108 (307)
T ss_dssp CCTTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEE
T ss_pred ecccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEE
Confidence 34578999999999999999999875 3699999876443 3344577899999999999999999999875 556899
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCC
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~ 965 (1114)
||||+++++|.+++......+++.++..++.|+++||+|||+. +|+||||||+||++++++.+||+|||+++.....
T Consensus 109 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~ 185 (307)
T 3lb7_A 109 VTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp EEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEEECCCCSSCC----
T ss_pred EEecCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEEEccCCCceecccc
Confidence 9999999999999987778899999999999999999999999 9999999999999999999999999999865321
Q ss_pred -CCCccccccccccccCccccc---cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccc
Q 001253 966 -QSKSMSAIAGSYGYIAPEYAY---TMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLD 1041 (1114)
Q Consensus 966 -~~~~~~~~~g~~~y~aPE~~~---~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1114)
.........||+.|+|||++. +..++.++|||||||++|||++|+.||............ ...... .
T Consensus 186 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~----~~~~~~-----~ 256 (307)
T 3lb7_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFM----VGRGYA-----S 256 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHH----HHHTCC-----C
T ss_pred cccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHHHH----HhcCCC-----C
Confidence 223334567999999999986 667889999999999999999999999755432222211 111111 1
Q ss_pred ccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1042 ARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1042 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
+... .........+.+++.+||+.||++||++.|+++.|+.++...
T Consensus 257 ~~~~---~~~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~ 302 (307)
T 3lb7_A 257 PDLS---KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp CCST---TSCSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred cchh---hhhcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhc
Confidence 1110 011122346889999999999999999999999999987654
No 71
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=1.1e-39 Score=375.57 Aligned_cols=251 Identities=22% Similarity=0.301 Sum_probs=203.6
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 885 (1114)
.++|++.++||+|+||+||+|+.+ +++.||+|++++.........+.+..|..+++++ +||||+++++++.+++..|+
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 468999999999999999999986 6889999999876544444445677899998877 89999999999999999999
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCC
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~ 965 (1114)
||||+++|+|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+|+....
T Consensus 131 V~E~~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~~~- 205 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQR-QRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR- 205 (396)
T ss_dssp EEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC-
T ss_pred EEEcCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeeccc-
Confidence 9999999999999974 34789999999999999999999999 999999999999999999999999999986322
Q ss_pred CCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCC----CHHHHHHHHHhcCCccccccc
Q 001253 966 QSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGG----DLVTWVRNFIRNNSLVSGMLD 1041 (1114)
Q Consensus 966 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 1041 (1114)
........+||+.|+|||++.+..++.++||||+||++|||++|+.||....... .....+...+....
T Consensus 206 ~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~------- 278 (396)
T 4dc2_A 206 PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ------- 278 (396)
T ss_dssp TTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCC-------
T ss_pred CCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccc-------
Confidence 2334456789999999999999999999999999999999999999996543211 11222222222111
Q ss_pred ccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCH
Q 001253 1042 ARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTM 1076 (1114)
Q Consensus 1042 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 1076 (1114)
. ..+......+.+++.+||+.||++||++
T Consensus 279 --~----~~p~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 279 --I----RIPRSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp --C----CCCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred --c----CCCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 1 1112233468899999999999999996
No 72
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=6e-39 Score=359.15 Aligned_cols=261 Identities=25% Similarity=0.344 Sum_probs=206.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhc--CCCCceeeEEeEEEec----C
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGK--IRHRNIVKLYGFCYHQ----G 881 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~----~ 881 (1114)
.++|++.+.||+|+||+||+|++ +|+.||||++.... ...+..|.+++.. ++||||+++++++... .
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~------~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~ 79 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSRD------EKSWFRETELYNTVMLRHENILGFIASDMTSRHSST 79 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGGG------HHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEecccc------chhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCc
Confidence 47899999999999999999998 48999999986432 3344556655555 7999999999997653 4
Q ss_pred ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEecCCCCCCeEECCCCCeEE
Q 001253 882 SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLH--------HDCKPRIFHRDIKSNNILLDDKFEAHV 953 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH~Dlk~~Nill~~~~~~kl 953 (1114)
..++||||+++|+|.++++ ...+++..+..++.|+++||+||| +. +|+||||||+||+++.++.+||
T Consensus 80 ~~~lv~e~~~~g~L~~~l~--~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl 154 (301)
T 3q4u_A 80 QLWLITHYHEMGSLYDYLQ--LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCI 154 (301)
T ss_dssp EEEEEECCCTTCBHHHHHT--TCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEE
T ss_pred eeEEehhhccCCCHHHHHh--hcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEE
Confidence 5789999999999999996 357999999999999999999999 76 9999999999999999999999
Q ss_pred eeccCceecCCCCCCc---cccccccccccCccccccC------CCCcccchHHHHHHHHHHHhC----------CCCCC
Q 001253 954 GDFGLAKVIDMPQSKS---MSAIAGSYGYIAPEYAYTM------KVTEKCDIYSYGVVLLELLTG----------RAPVQ 1014 (1114)
Q Consensus 954 ~DfG~a~~~~~~~~~~---~~~~~g~~~y~aPE~~~~~------~~~~~~DvwslGvil~el~tg----------~~p~~ 1014 (1114)
+|||+++......... .....||+.|+|||++.+. .++.++|||||||++|||++| +.||.
T Consensus 155 ~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~ 234 (301)
T 3q4u_A 155 ADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFY 234 (301)
T ss_dssp CCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTT
T ss_pred eeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccccccccccc
Confidence 9999998764332221 2345799999999999876 456799999999999999999 88887
Q ss_pred CCCCCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhh
Q 001253 1015 PLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSES 1086 (1114)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1086 (1114)
......................... . ...........+.+++.+||+.||++|||+.|+++.|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 235 DVVPNDPSFEDMRKVVCVDQQRPNI-----P-NRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp TTSCSSCCHHHHHHHHTTSCCCCCC-----C-GGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred ccCCCCcchhhhhHHHhccCCCCCC-----C-hhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 6655444444444433322111110 0 0112334567899999999999999999999999999986
No 73
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=1e-39 Score=368.73 Aligned_cols=271 Identities=26% Similarity=0.338 Sum_probs=211.5
Q ss_pred HhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc----
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS---- 882 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 882 (1114)
..++|++.++||+|+||+||+|++. ++.||||++.... .....+..|+.++++++||||+++++++.+...
T Consensus 22 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~----~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~ 96 (322)
T 3soc_A 22 QSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD----KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVD 96 (322)
T ss_dssp TTEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEE
T ss_pred chhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc----hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCce
Confidence 3478999999999999999999987 8999999996532 223455678999999999999999999987553
Q ss_pred eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC-------CCCeEecCCCCCCeEECCCCCeEEee
Q 001253 883 NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDC-------KPRIFHRDIKSNNILLDDKFEAHVGD 955 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-------~~~ivH~Dlk~~Nill~~~~~~kl~D 955 (1114)
.++||||+++|+|.++++. ..+++..+..++.|+++||+|||+.+ .++|+||||||+||+++.++.+||+|
T Consensus 97 ~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~D 174 (322)
T 3soc_A 97 LWLITAFHEKGSLSDFLKA--NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIAD 174 (322)
T ss_dssp EEEEEECCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECC
T ss_pred EEEEEecCCCCCHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEcc
Confidence 6999999999999999974 35999999999999999999999751 33899999999999999999999999
Q ss_pred ccCceecCCCCC-CccccccccccccCcccccc-----CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCH-------
Q 001253 956 FGLAKVIDMPQS-KSMSAIAGSYGYIAPEYAYT-----MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDL------- 1022 (1114)
Q Consensus 956 fG~a~~~~~~~~-~~~~~~~g~~~y~aPE~~~~-----~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~------- 1022 (1114)
||+++....... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.........
T Consensus 175 Fg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~ 254 (322)
T 3soc_A 175 FGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIG 254 (322)
T ss_dssp CTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHC
T ss_pred CCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhc
Confidence 999987653322 22344679999999999886 35667899999999999999999999764432211
Q ss_pred ----HHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1023 ----VTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1023 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
...+......... .+... ...........+.+++.+||+.||++|||+.|+++.|+++++..
T Consensus 255 ~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~~ 320 (322)
T 3soc_A 255 QHPSLEDMQEVVVHKKK-----RPVLR-DYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRLT 320 (322)
T ss_dssp SSCCHHHHHHHHTTSCC-----CCCCC-GGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred cCCchhhhhhhhhcccC-----CCCcc-ccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 1111111111110 01100 00112344567999999999999999999999999999987643
No 74
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.2e-39 Score=367.30 Aligned_cols=251 Identities=21% Similarity=0.251 Sum_probs=209.1
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|+++ +++.||+|++.... .....+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~----~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv 79 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG----TDQVLVKKEISILNIARHRNILHLHESFESMEELVMI 79 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT----HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc----ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEE
Confidence 368999999999999999999986 68899999986432 2355688999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC--CCCeEEeeccCceecCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD--KFEAHVGDFGLAKVIDM 964 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~--~~~~kl~DfG~a~~~~~ 964 (1114)
|||+++|+|.+++......+++.++..++.|+++||+|||+. +|+||||||+||+++. ++.+||+|||+++....
T Consensus 80 ~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~ 156 (321)
T 1tki_A 80 FEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP 156 (321)
T ss_dssp ECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCT
T ss_pred EEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCC
Confidence 999999999999986666899999999999999999999999 9999999999999987 78999999999987642
Q ss_pred CCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccc
Q 001253 965 PQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARL 1044 (1114)
Q Consensus 965 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1114)
........||+.|+|||++.+..++.++||||+||++|+|++|..||.... ....+........
T Consensus 157 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~~~~i~~~~~---------- 220 (321)
T 1tki_A 157 --GDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAET----NQQIIENIMNAEY---------- 220 (321)
T ss_dssp --TCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHHTCC----------
T ss_pred --CCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCC----HHHHHHHHHcCCC----------
Confidence 233445679999999999998889999999999999999999999997533 2233333222111
Q ss_pred cCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1045 NLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1045 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.............+.+++.+||+.||++|||+.|+++
T Consensus 221 ~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~ 257 (321)
T 1tki_A 221 TFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ 257 (321)
T ss_dssp CCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred CCChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0000011122346889999999999999999999987
No 75
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=4.5e-39 Score=361.31 Aligned_cols=267 Identities=22% Similarity=0.358 Sum_probs=207.7
Q ss_pred hcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
.++|++.++||+|+||+||+|++++|+.||+|++...... ....+.+.+|+.++++++||||+++++++.+++..++||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 98 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAED-EGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC-------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEeccccc-chhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence 3789999999999999999999988999999999765432 233567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+++ ++.+++......+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....+.
T Consensus 99 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~- 173 (311)
T 3niz_A 99 EFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFGIPV- 173 (311)
T ss_dssp ECCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETTSCC-
T ss_pred cCCCC-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecCCCc-
Confidence 99986 88888887777899999999999999999999999 99999999999999999999999999998765322
Q ss_pred CccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccc--cc-----
Q 001253 968 KSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVS--GM----- 1039 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~----- 1039 (1114)
.......||+.|+|||++.+ ..++.++||||+||++|||++|+.||........... +........... ..
T Consensus 174 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~ 252 (311)
T 3niz_A 174 RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPK-IFSILGTPNPREWPQVQELPL 252 (311)
T ss_dssp C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHH-HHHHHCCCCTTTSGGGTTSHH
T ss_pred ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHH-HHHHHCCCChHHhhhhhccch
Confidence 23344578999999999876 5689999999999999999999999987655443333 322222111000 00
Q ss_pred -ccccccCCCcc-----cHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1040 -LDARLNLQDEK-----TVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1040 -~~~~~~~~~~~-----~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
........... ......++.+++.+||++||++|||++|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 253 WKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred hhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 00000000000 1112246789999999999999999999874
No 76
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=1.7e-39 Score=367.44 Aligned_cols=250 Identities=22% Similarity=0.254 Sum_probs=207.8
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.+.||+|+||+||+|+.+ +|+.||+|++.+...........+.+|+.+++.++||||+++++++.+.+..|+||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 67999999999999999999986 79999999997653222223566888999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+++|+|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.... ..
T Consensus 85 E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~-~~ 159 (337)
T 1o6l_A 85 EYANGGELFFHLSR-ERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS-DG 159 (337)
T ss_dssp ECCTTCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC-TT
T ss_pred eCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhccc-CC
Confidence 99999999999974 34789999999999999999999999 999999999999999999999999999986432 22
Q ss_pred CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccCC
Q 001253 968 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQ 1047 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1114)
......+||+.|+|||++.+..++.++||||+||++|||++|+.||.... ............ ..
T Consensus 160 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~----~~~~~~~i~~~~----------~~-- 223 (337)
T 1o6l_A 160 ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD----HERLFELILMEE----------IR-- 223 (337)
T ss_dssp CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCC----------CC--
T ss_pred CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCC----HHHHHHHHHcCC----------CC--
Confidence 33456789999999999999999999999999999999999999997432 222222222211 11
Q ss_pred CcccHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 001253 1048 DEKTVSHMITVLKIAMLCTNISPFDRP-----TMREVVL 1081 (1114)
Q Consensus 1048 ~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1081 (1114)
.+......+.+++.+||+.||++|| +++|+++
T Consensus 224 --~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 224 --FPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp --CCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred --CCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 1112234678999999999999999 8999875
No 77
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=6.3e-40 Score=387.99 Aligned_cols=263 Identities=25% Similarity=0.394 Sum_probs=215.5
Q ss_pred HHHHHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc
Q 001253 803 DLVVATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS 882 (1114)
Q Consensus 803 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 882 (1114)
++++..++|++.++||+|+||+||+|+++++..||||+++.... ..+.+.+|+.++++++||||+++++++. .+.
T Consensus 182 ~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~----~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~ 256 (454)
T 1qcf_A 182 AWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSM----SVEAFLAEANVMKTLQHDKLVKLHAVVT-KEP 256 (454)
T ss_dssp CSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSB----CHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSS
T ss_pred ceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCc----cHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCc
Confidence 34556788999999999999999999998889999999976442 2567899999999999999999999986 667
Q ss_pred eEEEEecCCCCCHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 883 NLLMYEYMARGSLGELLHGAS-STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
.++||||+++|+|.++++... ..+++..+..++.|+++||+|||+. +|+||||||+|||++.++.+||+|||+++.
T Consensus 257 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~ 333 (454)
T 1qcf_A 257 IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARV 333 (454)
T ss_dssp CEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGG
T ss_pred cEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceE
Confidence 899999999999999997432 3688999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 962 IDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 962 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
.............+++.|+|||++....++.++|||||||++|||++ |+.||..... .+........ .
T Consensus 334 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~----~~~~~~i~~~-~------ 402 (454)
T 1qcf_A 334 IEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN----PEVIRALERG-Y------ 402 (454)
T ss_dssp BCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH----HHHHHHHHHT-C------
T ss_pred cCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCH----HHHHHHHHcC-C------
Confidence 54322222233457789999999998999999999999999999999 9999975432 2222221111 0
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
+ ...+......+.++|.+||+.||++|||+++|++.|+++....
T Consensus 403 --~----~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~ 446 (454)
T 1qcf_A 403 --R----MPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTAT 446 (454)
T ss_dssp --C----CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSS
T ss_pred --C----CCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhcc
Confidence 0 0111223346889999999999999999999999999986543
No 78
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=9.3e-39 Score=360.32 Aligned_cols=261 Identities=22% Similarity=0.332 Sum_probs=212.9
Q ss_pred CCCCHHHHHHHhcC----------CcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC
Q 001253 797 EGFTFKDLVVATDN----------FDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI 865 (1114)
Q Consensus 797 ~~~~~~~~~~~~~~----------~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l 865 (1114)
..++++++..+.+. |+..++||+|+||+||+|+.+ +|+.||||++...... ..+.+.+|+.+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~---~~~~~~~E~~~l~~l 99 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQ---RRELLFNEVVIMRDY 99 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC---SHHHHHHHHHHHTTC
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchh---HHHHHHHHHHHHHhC
Confidence 34677776665543 677789999999999999987 7999999999755433 256688999999999
Q ss_pred CCCceeeEEeEEEecCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEE
Q 001253 866 RHRNIVKLYGFCYHQGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILL 945 (1114)
Q Consensus 866 ~h~niv~l~~~~~~~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill 945 (1114)
+||||+++++++...+..++||||+++++|.+++.. ..+++..+..++.|+++||+|||+. +|+||||||+||++
T Consensus 100 ~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~--~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll 174 (321)
T 2c30_A 100 QHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQ--VRLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILL 174 (321)
T ss_dssp CCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEE
T ss_pred CCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEE
Confidence 999999999999999999999999999999999973 4689999999999999999999998 99999999999999
Q ss_pred CCCCCeEEeeccCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHH
Q 001253 946 DDKFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTW 1025 (1114)
Q Consensus 946 ~~~~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~ 1025 (1114)
+.++.+||+|||+++...... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||.... ....
T Consensus 175 ~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~----~~~~ 249 (321)
T 2c30_A 175 TLDGRVKLSDFGFCAQISKDV-PKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDS----PVQA 249 (321)
T ss_dssp CTTCCEEECCCTTCEECCSSS-CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----HHHH
T ss_pred CCCCcEEEeeeeeeeecccCc-cccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC----HHHH
Confidence 999999999999998764322 23345679999999999999999999999999999999999999996432 2222
Q ss_pred HHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1026 VRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
......... +.. .........+.+++.+||+.||++|||++|+++
T Consensus 250 ~~~~~~~~~-------~~~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 250 MKRLRDSPP-------PKL----KNSHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp HHHHHHSSC-------CCC----TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHhcCCC-------CCc----CccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 222222110 000 011122346889999999999999999999986
No 79
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=1e-39 Score=377.95 Aligned_cols=260 Identities=22% Similarity=0.260 Sum_probs=208.7
Q ss_pred HHHHHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC
Q 001253 803 DLVVATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG 881 (1114)
Q Consensus 803 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 881 (1114)
++....++|++.++||+|+||+||+|+.+ +++.||+|++.+.........+.+.+|+.+++.++||||+++++++.+++
T Consensus 63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~ 142 (410)
T 3v8s_A 63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR 142 (410)
T ss_dssp HHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence 44455689999999999999999999987 68999999997532211112334778999999999999999999999999
Q ss_pred ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 882 SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
..|+||||++||+|.++++. ..+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+|+.
T Consensus 143 ~~~lV~E~~~gg~L~~~l~~--~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~a~~ 217 (410)
T 3v8s_A 143 YLYMVMEYMPGGDLVNLMSN--YDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMK 217 (410)
T ss_dssp EEEEEECCCTTEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred EEEEEEeCCCCCcHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccceeEe
Confidence 99999999999999999974 3589999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCCccccccccccccCccccccCC----CCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccc
Q 001253 962 IDMPQSKSMSAIAGSYGYIAPEYAYTMK----VTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVS 1037 (1114)
Q Consensus 962 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~----~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1114)
............+||+.|+|||++.+.. ++.++||||+||++|||++|+.||..... ............
T Consensus 218 ~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~----~~~~~~i~~~~~--- 290 (410)
T 3v8s_A 218 MNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL----VGTYSKIMNHKN--- 290 (410)
T ss_dssp CCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHHHHHTHHH---
T ss_pred eccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCCh----hhHHHHHHhccc---
Confidence 6543333345678999999999998765 78999999999999999999999975332 222222221100
Q ss_pred ccccccccCCCcccHHHHHHHHHHHhhccCCCCCC--CCCHHHHHH
Q 001253 1038 GMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFD--RPTMREVVL 1081 (1114)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~--RPs~~evl~ 1081 (1114)
.+. .+........+.+++.+|++.+|.+ ||+++|+++
T Consensus 291 -----~~~--~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 291 -----SLT--FPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp -----HCC--CCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred -----ccc--CCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 000 0001112346789999999999988 999999875
No 80
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=1.2e-39 Score=374.90 Aligned_cols=262 Identities=24% Similarity=0.413 Sum_probs=203.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeC----CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR----TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN 883 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 883 (1114)
.++|++.+.||+|+||+||+|+++ ++..||||+++... .....+.+.+|+.++++++||||+++++++.+.+..
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~ 121 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGY--TEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPV 121 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCcc--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCce
Confidence 468999999999999999999965 57789999997543 334466799999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
++||||+++|+|.++++.....+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 122 ~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 198 (373)
T 2qol_A 122 MIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVLE 198 (373)
T ss_dssp EEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred EEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCccccccc
Confidence 999999999999999987777899999999999999999999998 99999999999999999999999999998764
Q ss_pred CCCCCc--cccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 964 MPQSKS--MSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 964 ~~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
...... .....+++.|+|||++.+..++.++|||||||++|||++ |+.||..... .+..+ .+....
T Consensus 199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~----~~~~~-~i~~~~------ 267 (373)
T 2qol_A 199 DDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN----QDVIK-AVDEGY------ 267 (373)
T ss_dssp ---------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCH----HHHHH-HHHTTE------
T ss_pred cCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCH----HHHHH-HHHcCC------
Confidence 332211 122345778999999999999999999999999999998 9999965432 22222 122110
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCC
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQG 1091 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~ 1091 (1114)
+ ...+......+.+++.+||+.||++||++.|+++.|+++....+
T Consensus 268 --~----~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~~ 312 (373)
T 2qol_A 268 --R----LPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNPG 312 (373)
T ss_dssp --E----CCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCGG
T ss_pred --C----CCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCcc
Confidence 0 01111223468899999999999999999999999999866543
No 81
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=378.05 Aligned_cols=264 Identities=22% Similarity=0.233 Sum_probs=209.4
Q ss_pred HHHHHHHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe
Q 001253 801 FKDLVVATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH 879 (1114)
Q Consensus 801 ~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 879 (1114)
+++.....++|++.++||+|+||+||+|+.+ +|+.||+|++.+.........+.+.+|..++..++||||+++++++.+
T Consensus 53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 132 (412)
T 2vd5_A 53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD 132 (412)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence 3444456689999999999999999999986 799999999975432222223457889999999999999999999999
Q ss_pred cCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCc
Q 001253 880 QGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLA 959 (1114)
Q Consensus 880 ~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a 959 (1114)
.+..|+||||+++|+|.+++......+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||++
T Consensus 133 ~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~DFGla 209 (412)
T 2vd5_A 133 ENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLADFGSC 209 (412)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEeechhh
Confidence 9999999999999999999986666899999999999999999999998 9999999999999999999999999999
Q ss_pred eecCCCCCCccccccccccccCccccc-------cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhc
Q 001253 960 KVIDMPQSKSMSAIAGSYGYIAPEYAY-------TMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRN 1032 (1114)
Q Consensus 960 ~~~~~~~~~~~~~~~g~~~y~aPE~~~-------~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 1032 (1114)
+.............+||+.|+|||++. +..++.++||||+||++|||++|+.||..... .+........
T Consensus 210 ~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~----~~~~~~i~~~ 285 (412)
T 2vd5_A 210 LKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADST----AETYGKIVHY 285 (412)
T ss_dssp EECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSH----HHHHHHHHTH
T ss_pred eeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCH----HHHHHHHHhc
Confidence 876543333334568999999999987 35689999999999999999999999975432 2222221111
Q ss_pred CCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCC---CCHHHHHH
Q 001253 1033 NSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDR---PTMREVVL 1081 (1114)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R---Ps~~evl~ 1081 (1114)
. ..... +.........+.+++.+||. +|++| |+++|+++
T Consensus 286 ~--------~~~~~-p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 286 K--------EHLSL-PLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp H--------HHCCC-C----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred c--------cCcCC-CccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 0 00000 00011123468899999999 99998 58888753
No 82
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=4.8e-39 Score=359.00 Aligned_cols=275 Identities=19% Similarity=0.246 Sum_probs=218.6
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEE-EecCceE
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFC-YHQGSNL 884 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~ 884 (1114)
..++|++.+.||+|+||+||+|++. +++.||||++...... +.+.+|+.+++.++|++++..+.++ ...+..+
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-----~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~ 81 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH-----PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNV 81 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---C-----CCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccc-----hHHHHHHHHHHHhcCCCCCCeeeeecCCCCceE
Confidence 3478999999999999999999974 7899999987654432 2477899999999988766666655 5667789
Q ss_pred EEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEE---CCCCCeEEeeccCcee
Q 001253 885 LMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILL---DDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~DfG~a~~ 961 (1114)
+||||+ +++|.+++......+++..+..++.|++.||+|||+. +|+||||||+||++ ++++.+||+|||+++.
T Consensus 82 lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~ 157 (296)
T 4hgt_A 82 MVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK 157 (296)
T ss_dssp EEEECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred EEEEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCcccee
Confidence 999999 8899999986677899999999999999999999999 99999999999999 7889999999999987
Q ss_pred cCCCCC------CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCC--HHHHHHHHHhcC
Q 001253 962 IDMPQS------KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGD--LVTWVRNFIRNN 1033 (1114)
Q Consensus 962 ~~~~~~------~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~ 1033 (1114)
...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||........ ....+.......
T Consensus 158 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 237 (296)
T 4hgt_A 158 YRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST 237 (296)
T ss_dssp CBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS
T ss_pred ccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccc
Confidence 654322 123356799999999999999999999999999999999999999986543322 211111111100
Q ss_pred CcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCcccccCCCCC
Q 001253 1034 SLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFEFSPMDHDS 1102 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~~~~~~~~~ 1102 (1114)
.. . .........+.+++.+||+.||++|||++|+++.|+++..+.+.....++||+.
T Consensus 238 ~~-~-----------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~~~~~~~~dw~~ 294 (296)
T 4hgt_A 238 PI-E-----------VLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNM 294 (296)
T ss_dssp CH-H-----------HHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHTCCTTCCCGGGG
T ss_pred hh-h-----------hhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCccCccchhh
Confidence 00 0 000111246889999999999999999999999999999999999999999975
No 83
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=5e-39 Score=368.74 Aligned_cols=252 Identities=23% Similarity=0.318 Sum_probs=207.5
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.+.||+|+||+||+|+.+ +++.||+|++...........+.+.+|+.+++.++|||||++++++.+.+..|+||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 67999999999999999999976 68999999997654322233567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+++|+|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++... ..
T Consensus 95 e~~~gg~L~~~l~~-~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~--~~ 168 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQ-NVHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLP--RE 168 (384)
T ss_dssp CCCTTEEHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC--TT
T ss_pred ecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeecc--CC
Confidence 99999999999984 45799999999999999999999999 99999999999999999999999999998764 23
Q ss_pred CccccccccccccCcccccc---CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccc
Q 001253 968 KSMSAIAGSYGYIAPEYAYT---MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARL 1044 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~---~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1114)
......+||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... ..............
T Consensus 169 ~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~-~~~~~~~~~~~~~~----------- 236 (384)
T 4fr4_A 169 TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSS-TSSKEIVHTFETTV----------- 236 (384)
T ss_dssp CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTT-SCHHHHHHHHHHCC-----------
T ss_pred CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCC-ccHHHHHHHHhhcc-----------
Confidence 34456789999999999864 4589999999999999999999999975433 22333333222211
Q ss_pred cCCCcccHHHHHHHHHHHhhccCCCCCCCCC-HHHHHH
Q 001253 1045 NLQDEKTVSHMITVLKIAMLCTNISPFDRPT-MREVVL 1081 (1114)
Q Consensus 1045 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-~~evl~ 1081 (1114)
...+......+.+++.+||+.||.+||+ ++++.+
T Consensus 237 ---~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 237 ---VTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp ---CCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred ---cCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 0111122346889999999999999998 666653
No 84
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=8.2e-39 Score=357.12 Aligned_cols=274 Identities=19% Similarity=0.249 Sum_probs=222.2
Q ss_pred hcCCcCCceecccCCeEEEEEEe-CCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEE-EecCceEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVL-RTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFC-YHQGSNLL 885 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~l 885 (1114)
.++|++.+.||+|+||+||+|++ .+|+.||||++..... .+.+.+|+.+++.++|++++..+.++ ...+..++
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~l 82 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK-----HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVM 82 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS-----CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc-----hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEE
Confidence 46899999999999999999997 4789999999876543 23578899999999988766666655 55677899
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEEC---CCCCeEEeeccCceec
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLD---DKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~---~~~~~kl~DfG~a~~~ 962 (1114)
||||+ +++|.+++......+++..+..++.|++.||+|||+. +|+||||||+||+++ +++.+||+|||+++..
T Consensus 83 v~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~ 158 (296)
T 3uzp_A 83 VMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKY 158 (296)
T ss_dssp EEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEEC
T ss_pred EEEec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccc
Confidence 99999 8899999986677899999999999999999999999 999999999999994 8889999999999876
Q ss_pred CCCCCC------ccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCC--CHHHHHHHHHhcCC
Q 001253 963 DMPQSK------SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGG--DLVTWVRNFIRNNS 1034 (1114)
Q Consensus 963 ~~~~~~------~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~ 1034 (1114)
...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||....... .....+........
T Consensus 159 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 238 (296)
T 3uzp_A 159 RDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 238 (296)
T ss_dssp BCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSC
T ss_pred cccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCc
Confidence 543321 2345679999999999999999999999999999999999999998654322 22222222111100
Q ss_pred cccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCcccccCCCCC
Q 001253 1035 LVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFEFSPMDHDS 1102 (1114)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~~~~~~~~~ 1102 (1114)
. . .........+.+++.+||+.||++|||++++++.|+++....+.....++||+.
T Consensus 239 ~------~------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~~~~~~dw~~ 294 (296)
T 3uzp_A 239 I------E------VLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNM 294 (296)
T ss_dssp H------H------HHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTCCSSCCCGGGG
T ss_pred h------H------HHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCCcccccccccc
Confidence 0 0 000112246889999999999999999999999999999999999999999975
No 85
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=1.6e-39 Score=373.69 Aligned_cols=288 Identities=16% Similarity=0.232 Sum_probs=220.2
Q ss_pred HhcCCcCCceecccCCeEEEEEEeCC------CcEEEEEEecccCCCChh--------hHHHHHHHHHHHhcCCCCceee
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLRT------GHTVAVKKLASNREGNNN--------VDNSFRAEILTLGKIRHRNIVK 872 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~~------g~~vavK~~~~~~~~~~~--------~~~~~~~E~~~l~~l~h~niv~ 872 (1114)
..++|++.++||+|+||+||+|+++. ++.||||++......... ....+..|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 34689999999999999999999864 478999998754321100 0112334556677889999999
Q ss_pred EEeEEEec----CceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEEC--
Q 001253 873 LYGFCYHQ----GSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLD-- 946 (1114)
Q Consensus 873 l~~~~~~~----~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~-- 946 (1114)
+++++... ...|+||||+ +++|.+++......+++..+..++.|++.||+|||+. +|+||||||+|||++
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~~~ 188 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLNYK 188 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEESS
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEecC
Confidence 99998775 4579999999 8999999987767899999999999999999999999 999999999999999
Q ss_pred CCCCeEEeeccCceecCCCCC------CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCC
Q 001253 947 DKFEAHVGDFGLAKVIDMPQS------KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGG 1020 (1114)
Q Consensus 947 ~~~~~kl~DfG~a~~~~~~~~------~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~ 1020 (1114)
.++.+||+|||+++.+..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 189 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~ 268 (364)
T 3op5_A 189 NPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDP 268 (364)
T ss_dssp CTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCH
T ss_pred CCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCH
Confidence 889999999999987542211 11234569999999999999999999999999999999999999998544333
Q ss_pred CHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCcccccCCC
Q 001253 1021 DLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFEFSPMDH 1100 (1114)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~~~~~~~ 1100 (1114)
......+...... ...+.+..+. .......+.+++.+||+.||++||++.++++.|+++....+.....++||
T Consensus 269 ~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~~~~~~~~dw 341 (364)
T 3op5_A 269 KYVRDSKIRYREN--IASLMDKCFP-----AANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSKDDGKLDL 341 (364)
T ss_dssp HHHHHHHHHHHHC--HHHHHHHHSC-----TTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHhhhh--HHHHHHHhcc-----cccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcCCCcCCccce
Confidence 3333332222110 1111111110 01113468899999999999999999999999999999999999999999
Q ss_pred CCccc
Q 001253 1101 DSDQK 1105 (1114)
Q Consensus 1101 ~~~~~ 1105 (1114)
+....
T Consensus 342 ~~~~~ 346 (364)
T 3op5_A 342 SVVEN 346 (364)
T ss_dssp -----
T ss_pred EeccC
Confidence 86553
No 86
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=1.4e-39 Score=374.10 Aligned_cols=271 Identities=25% Similarity=0.377 Sum_probs=218.5
Q ss_pred CCCHHHHHHHhcCCcCCceecccCCeEEEEEEe------CCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCce
Q 001253 798 GFTFKDLVVATDNFDERFVIGRGACGTVYRAVL------RTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNI 870 (1114)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~ni 870 (1114)
.+...++.+..++|++.++||+|+||+||+|++ .+++.||||++..... ....+.+.+|+.+++++ +||||
T Consensus 11 ~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~hpni 88 (359)
T 3vhe_A 11 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT--HSEHRALMSELKILIHIGHHLNV 88 (359)
T ss_dssp CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTB
T ss_pred CCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCC--HHHHHHHHHHHHHHHhhcCCcce
Confidence 345566777889999999999999999999984 2568999999975432 33356789999999999 78999
Q ss_pred eeEEeEEEecCc-eEEEEecCCCCCHHHHhccCCC---------------------------------------------
Q 001253 871 VKLYGFCYHQGS-NLLMYEYMARGSLGELLHGASS--------------------------------------------- 904 (1114)
Q Consensus 871 v~l~~~~~~~~~-~~lv~E~~~~gsL~~~l~~~~~--------------------------------------------- 904 (1114)
+++++++.+.+. .++||||+++|+|.++++....
T Consensus 89 v~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (359)
T 3vhe_A 89 VNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFV 168 (359)
T ss_dssp CCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC---------------------------------------
T ss_pred eeeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccc
Confidence 999999987654 8999999999999999975432
Q ss_pred --------------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCC
Q 001253 905 --------------------TLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDM 964 (1114)
Q Consensus 905 --------------------~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~ 964 (1114)
.+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~ 245 (359)
T 3vhe_A 169 EEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYK 245 (359)
T ss_dssp ---------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTS
T ss_pred cccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeecc
Confidence 289999999999999999999999 999999999999999999999999999986543
Q ss_pred CCC-CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccccc
Q 001253 965 PQS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDA 1042 (1114)
Q Consensus 965 ~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1114)
... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||............+.. ...
T Consensus 246 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~----~~~------- 314 (359)
T 3vhe_A 246 DPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKE----GTR------- 314 (359)
T ss_dssp CTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHH----TCC-------
T ss_pred cccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHc----CCC-------
Confidence 222 23345678999999999999999999999999999999998 99999765433322222221 110
Q ss_pred cccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1043 RLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1043 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
...+......+.+++.+||+.||++|||++|+++.|+++...
T Consensus 315 -----~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 356 (359)
T 3vhe_A 315 -----MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 356 (359)
T ss_dssp -----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence 001111234688999999999999999999999999998754
No 87
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-39 Score=373.28 Aligned_cols=271 Identities=25% Similarity=0.391 Sum_probs=219.4
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeC--------CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeE
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLR--------TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGF 876 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~--------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~ 876 (1114)
+..++|++.++||+|+||+||+|++. ++..||||+++... .....+.+.+|+++++++ +||||++++++
T Consensus 66 i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~ 143 (382)
T 3tt0_A 66 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDA--TEKDLSDLISEMEMMKMIGKHKNIINLLGA 143 (382)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred cchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeecccc--CHHHHHHHHHHHHHHHHhcCCchhhhheee
Confidence 34578999999999999999999962 34679999997653 233456788999999999 99999999999
Q ss_pred EEecCceEEEEecCCCCCHHHHhccCC---------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCC
Q 001253 877 CYHQGSNLLMYEYMARGSLGELLHGAS---------------STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSN 941 (1114)
Q Consensus 877 ~~~~~~~~lv~E~~~~gsL~~~l~~~~---------------~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~ 941 (1114)
+..++..++||||+++|+|.+++.... ..+++..+..++.|+++||+|||+. +|+||||||+
T Consensus 144 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~ 220 (382)
T 3tt0_A 144 CTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAAR 220 (382)
T ss_dssp ECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGG
T ss_pred eccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcc
Confidence 999999999999999999999997543 3589999999999999999999999 9999999999
Q ss_pred CeEECCCCCeEEeeccCceecCCCCC-CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCC
Q 001253 942 NILLDDKFEAHVGDFGLAKVIDMPQS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQG 1019 (1114)
Q Consensus 942 Nill~~~~~~kl~DfG~a~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~ 1019 (1114)
||++++++.+||+|||+++....... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||....
T Consensus 221 NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~-- 298 (382)
T 3tt0_A 221 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP-- 298 (382)
T ss_dssp GEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--
T ss_pred eEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC--
Confidence 99999999999999999987643322 23344567899999999999999999999999999999999 999996433
Q ss_pred CCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCcccccC
Q 001253 1020 GDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFEFSPM 1098 (1114)
Q Consensus 1020 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~~~~~ 1098 (1114)
..+..+ .+...... ..+......+.+++.+||+.||++|||++|+++.|+++.......+....
T Consensus 299 --~~~~~~-~~~~~~~~------------~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~~~~~~ 362 (382)
T 3tt0_A 299 --VEELFK-LLKEGHRM------------DKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQEMGYY 362 (382)
T ss_dssp --HHHHHH-HHHTTCCC------------CCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCSCC----
T ss_pred --HHHHHH-HHHcCCCC------------CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhcCCCCCC
Confidence 222222 22221110 11112234688999999999999999999999999999887776666554
No 88
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-39 Score=366.17 Aligned_cols=248 Identities=24% Similarity=0.327 Sum_probs=204.3
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.+.||+|+||+||+|++. +|+.||||++...........+.+.+|+.+++.++||||+++++++..++..++||
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 88 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI 88 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 67999999999999999999974 78999999997543222233457889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+ +|+|.+++.. ...+++.++..++.|+++||+|||+. +|+||||||+||++++++.+||+|||++.... ..
T Consensus 89 E~~-~g~l~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~--~~ 161 (336)
T 3h4j_B 89 EYA-GGELFDYIVE-KKRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMT--DG 161 (336)
T ss_dssp CCC-CEEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTT--TS
T ss_pred ECC-CCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceecc--CC
Confidence 999 6799988864 34689999999999999999999999 99999999999999999999999999998654 22
Q ss_pred CccccccccccccCccccccCCC-CcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 968 KSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~~~-~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
......+||+.|+|||++.+..+ +.++||||+||++|+|++|+.||....... ....+.....
T Consensus 162 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~--------------~~~~i~~~~~-- 225 (336)
T 3h4j_B 162 NFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPN--------------LFKKVNSCVY-- 225 (336)
T ss_dssp BTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTT--------------CBCCCCSSCC--
T ss_pred cccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHH--------------HHHHHHcCCC--
Confidence 33455689999999999988776 689999999999999999999997543211 1111111111
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
..+......+.+++.+||+.||.+|||++|+++
T Consensus 226 --~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 226 --VMPDFLSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp --CCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred --CCcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 112223346789999999999999999999976
No 89
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.3e-39 Score=378.89 Aligned_cols=352 Identities=23% Similarity=0.199 Sum_probs=283.4
Q ss_pred ccchhhcccccccCCchhhhcCCCccceeeecccccccccCccccccccccccccccccCCCCCchhhhcccccceeecc
Q 001253 271 SLETLALYDNKQVGQLPKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLF 350 (1114)
Q Consensus 271 ~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~ 350 (1114)
+++..........+..+..++.+++|++|++++|.+++ +| .++.+++|++|++++|++++. | +..+++|+.|+++
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls 93 (457)
T 3bz5_A 19 NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACD 93 (457)
T ss_dssp HHHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECC
T ss_pred HHHHHHHHhcCcCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECc
Confidence 33333333444444555567777778888888877774 34 577777888888888877764 3 7777888888888
Q ss_pred cccccCcccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCC
Q 001253 351 ENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKI 430 (1114)
Q Consensus 351 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 430 (1114)
+|++++. + +..+++|++|++++|++++. + +..+++|++|++++|++++. .++.+++|++|++++|+..+.+
T Consensus 94 ~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 94 SNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp SSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC
T ss_pred CCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc
Confidence 8888875 2 77888888888888888863 3 78888888888888888874 2778889999999999665555
Q ss_pred CccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccc
Q 001253 431 PRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCN 510 (1114)
Q Consensus 431 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 510 (1114)
.+..+++|++|++++|++++ +| +..+++|+.|++++|++++. .+..+++|++|++++|++++ +| ++.++
T Consensus 165 --~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~ 233 (457)
T 3bz5_A 165 --DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLT 233 (457)
T ss_dssp --CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCT
T ss_pred --ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccC
Confidence 47788999999999999996 44 78889999999999999865 38888999999999999997 55 88899
Q ss_pred cCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeecc
Q 001253 511 ALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLS 590 (1114)
Q Consensus 511 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 590 (1114)
+|+.|++++|+|++.. ++.+++|+.|++++|. |+.|++++|.+.+.+| ++.+++|+.|+++
T Consensus 234 ~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVT 294 (457)
T ss_dssp TCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCT
T ss_pred CCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECC
Confidence 9999999999999754 4567888999988774 4578899999988887 5788999999999
Q ss_pred CccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccC
Q 001253 591 ENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGE 670 (1114)
Q Consensus 591 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ 670 (1114)
+|...+.+|. ..++|+.|++++| ++|+ .|+|++|+|++. | ++++++|+.||+++|+|+|
T Consensus 295 ~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~-~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~- 353 (457)
T 3bz5_A 295 HNTQLYLLDC---QAAGITELDLSQN-------------PKLV-YLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD- 353 (457)
T ss_dssp TCTTCCEEEC---TTCCCSCCCCTTC-------------TTCC-EEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-
T ss_pred CCcccceecc---CCCcceEechhhc-------------ccCC-EEECCCCccccc-c--cccCCcCcEEECCCCCCCC-
Confidence 9999988885 4567888888877 3566 699999999995 3 9999999999999999997
Q ss_pred CCCccccccccceEEeccCcccCC
Q 001253 671 IPGSFVNLSSLLGCNFSYNNLTGP 694 (1114)
Q Consensus 671 ip~~~~~l~~l~~l~ls~N~l~g~ 694 (1114)
++.|..|++++|+++|.
T Consensus 354 -------l~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 354 -------FSSVGKIPALNNNFEAE 370 (457)
T ss_dssp -------CTTGGGSSGGGTSEEEE
T ss_pred -------ccccccccccCCcEEec
Confidence 24677789999999997
No 90
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2e-39 Score=356.29 Aligned_cols=258 Identities=24% Similarity=0.373 Sum_probs=215.4
Q ss_pred hcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
.++|++.+.||+|+||+||+|++.+++.||+|++...... .+.+.+|+.++++++||||+++++++.+++..++||
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 82 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS----EEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVT 82 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBC----HHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCC----HHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEE
Confidence 4689999999999999999999988899999999765432 457889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+++++|.+++......+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||+++.......
T Consensus 83 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~ 159 (267)
T 3t9t_A 83 EFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY 159 (267)
T ss_dssp CCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred eCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEcccccccccccccc
Confidence 99999999999987777899999999999999999999999 999999999999999999999999999986543222
Q ss_pred CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 968 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
.......+++.|+|||++.+..++.++||||+|+++|||++ |+.||.... .............
T Consensus 160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~----~~~~~~~i~~~~~------------ 223 (267)
T 3t9t_A 160 TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS----NSEVVEDISTGFR------------ 223 (267)
T ss_dssp HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC----HHHHHHHHHTTCC------------
T ss_pred cccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCC----HHHHHHHHhcCCc------------
Confidence 22234467889999999998899999999999999999999 899986432 2222222211100
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
...+......+.+++.+||+.||++|||++|+++.|+++..+
T Consensus 224 -~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 224 -LYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp -CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -CCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 001111234688999999999999999999999999998754
No 91
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=1.5e-38 Score=354.10 Aligned_cols=267 Identities=22% Similarity=0.348 Sum_probs=207.2
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.++||+|+||+||+|+++ +|+.||||++...... ....+.+.+|+.++++++||||+++++++.+++..++||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 80 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDD-EGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVF 80 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSS-TTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCc-CCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEE
Confidence 57999999999999999999986 6899999999765543 334567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+++ ++.+.+......+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....+ .
T Consensus 81 e~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~-~ 155 (292)
T 3o0g_A 81 EFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIP-V 155 (292)
T ss_dssp ECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSC-C
T ss_pred ecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCc-c
Confidence 99986 66666665667899999999999999999999999 9999999999999999999999999999876432 2
Q ss_pred CccccccccccccCccccccCC-CCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccc--cccc---
Q 001253 968 KSMSAIAGSYGYIAPEYAYTMK-VTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVS--GMLD--- 1041 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~~-~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--- 1041 (1114)
.......||+.|+|||++.+.. ++.++||||+||++|||++|..||.......+....+........... ....
T Consensus 156 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 235 (292)
T 3o0g_A 156 RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPD 235 (292)
T ss_dssp SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTT
T ss_pred ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhccccc
Confidence 3334567899999999998766 799999999999999999998886543332222222222221110000 0000
Q ss_pred -------ccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1042 -------ARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1042 -------~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
+...............+.+++.+||+.||++|||++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 236 YKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp CCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0000000111223456789999999999999999999875
No 92
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=1.5e-39 Score=384.39 Aligned_cols=264 Identities=25% Similarity=0.399 Sum_probs=210.4
Q ss_pred HHHHHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc
Q 001253 803 DLVVATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS 882 (1114)
Q Consensus 803 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 882 (1114)
.+.+..++|++.++||+|+||+||+|+++.+..||||+++..... .+.|.+|+.++++++||||+++++++.+ +.
T Consensus 178 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~ 252 (452)
T 1fmk_A 178 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS----PEAFLQEAQVMKKLRHEKLVQLYAVVSE-EP 252 (452)
T ss_dssp CSBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSC----HHHHHHHHHHHHHCCCTTBCCEEEEECS-SS
T ss_pred ccccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCC----HHHHHHHHHHHHhCCCCCEeeEEEEEcC-Cc
Confidence 344556889999999999999999999998888999999765432 4678999999999999999999999876 67
Q ss_pred eEEEEecCCCCCHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 883 NLLMYEYMARGSLGELLHGA-SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
.++||||+++|+|.++++.. ...+++..+..++.|+++||+|||+. +|+||||||+|||+++++.+||+|||+++.
T Consensus 253 ~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~ 329 (452)
T 1fmk_A 253 IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARL 329 (452)
T ss_dssp CEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC-
T ss_pred eEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCcccee
Confidence 89999999999999999743 34689999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 962 IDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 962 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
.............+++.|+|||++.+..++.++|||||||++|||++ |+.||..... .+.... +..+.
T Consensus 330 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~----~~~~~~-i~~~~------ 398 (452)
T 1fmk_A 330 IEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN----REVLDQ-VERGY------ 398 (452)
T ss_dssp -------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH----HHHHHH-HHTTC------
T ss_pred cCCCceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCH----HHHHHH-HHcCC------
Confidence 65333333344567889999999999999999999999999999999 9999975432 222222 22111
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCC
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQG 1091 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~ 1091 (1114)
+ ...+......+.+++.+||+.||++|||++++++.|+++.....
T Consensus 399 --~----~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~ 443 (452)
T 1fmk_A 399 --R----MPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE 443 (452)
T ss_dssp --C----CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSC
T ss_pred --C----CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCC
Confidence 0 01112233468899999999999999999999999999865543
No 93
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=1.9e-39 Score=359.21 Aligned_cols=261 Identities=25% Similarity=0.382 Sum_probs=202.0
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeCC----CcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLRT----GHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG 881 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~----g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 881 (1114)
+..++|++.+.||+|+||+||+|++.. +..||+|++.... .....+.+.+|+.++++++||||+++++++. ++
T Consensus 12 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~ 88 (281)
T 1mp8_A 12 IQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCT--SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-EN 88 (281)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTT--SHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SS
T ss_pred EehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccC--CHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cC
Confidence 345789999999999999999999752 4579999986543 2344667889999999999999999999984 56
Q ss_pred ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 882 SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
..++||||+++|+|.+++......+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 89 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~ 165 (281)
T 1mp8_A 89 PVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRY 165 (281)
T ss_dssp SCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC------
T ss_pred ccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECccccccc
Confidence 78999999999999999987666899999999999999999999998 999999999999999999999999999987
Q ss_pred cCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 962 IDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 962 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
.............+++.|+|||++.+..++.++||||+|+++|||++ |..||...... +....+ .....
T Consensus 166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~-~~~~~i----~~~~~----- 235 (281)
T 1mp8_A 166 MEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN-DVIGRI----ENGER----- 235 (281)
T ss_dssp -------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGG-GHHHHH----HTTCC-----
T ss_pred cCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHH-HHHHHH----HcCCC-----
Confidence 65433333344567889999999998999999999999999999997 99999754432 222111 11110
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
...+......+.+++.+||+.||++|||+.|+++.|+++...
T Consensus 236 -------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 277 (281)
T 1mp8_A 236 -------LPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 277 (281)
T ss_dssp -------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -------CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 011112234688999999999999999999999999998653
No 94
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=4.5e-39 Score=357.53 Aligned_cols=266 Identities=24% Similarity=0.386 Sum_probs=203.6
Q ss_pred cCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEEe
Q 001253 809 DNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMYE 888 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~E 888 (1114)
++|++.++||+|+||+||+|+.++|+.||+|++...... ....+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 80 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKED-EGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFE 80 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGG-GCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEE
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccc-cccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEE
Confidence 578999999999999999999988999999999755432 2234668899999999999999999999999999999999
Q ss_pred cCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCCC
Q 001253 889 YMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQSK 968 (1114)
Q Consensus 889 ~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~ 968 (1114)
|+++ +|.+++......+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++....+. .
T Consensus 81 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~ 155 (288)
T 1ob3_A 81 HLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPV-R 155 (288)
T ss_dssp CCSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC----
T ss_pred ecCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCccc-c
Confidence 9986 99999987667899999999999999999999999 99999999999999999999999999998764322 2
Q ss_pred ccccccccccccCccccccC-CCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCC---ccc----ccc
Q 001253 969 SMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNS---LVS----GML 1040 (1114)
Q Consensus 969 ~~~~~~g~~~y~aPE~~~~~-~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~ 1040 (1114)
......||+.|+|||++.+. .++.++||||+||++|||++|+.||............. ....... +.. ...
T Consensus 156 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 234 (288)
T 1ob3_A 156 KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIF-RILGTPNSKNWPNVTELPKY 234 (288)
T ss_dssp ------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH-HHHCCCCTTTSTTGGGSTTC
T ss_pred ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHHCCCChhhchhhhccccc
Confidence 23345789999999998764 58999999999999999999999997543222111111 1111100 000 000
Q ss_pred cccccCCC-----cccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1041 DARLNLQD-----EKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1041 ~~~~~~~~-----~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
++...... .........+.+++.+||+.||++|||++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 235 DPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp CTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 00000000 001112346789999999999999999999875
No 95
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=3.4e-39 Score=359.91 Aligned_cols=264 Identities=28% Similarity=0.426 Sum_probs=208.2
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-----CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEec--
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-----TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQ-- 880 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-- 880 (1114)
.++|++.++||+|+||+||+|+++ +++.||||++.... ....+.+.+|+.++++++||||+++++++...
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 85 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST---EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR 85 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHH
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCC---HHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCC
Confidence 478999999999999999999842 68899999987432 34456789999999999999999999998653
Q ss_pred CceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 881 GSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 881 ~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
...++||||+++|+|.+++......+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~ 162 (295)
T 3ugc_A 86 RNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTK 162 (295)
T ss_dssp TSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC
T ss_pred CceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCcccc
Confidence 568999999999999999987666799999999999999999999998 99999999999999999999999999998
Q ss_pred ecCCCCC--CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCC----------CC-CHHHHHH
Q 001253 961 VIDMPQS--KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQ----------GG-DLVTWVR 1027 (1114)
Q Consensus 961 ~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~----------~~-~~~~~~~ 1027 (1114)
....... .......++..|+|||++.+..++.++||||+|+++|||++|..|+..... .. .....+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (295)
T 3ugc_A 163 VLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 242 (295)
T ss_dssp -------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHH
T ss_pred cccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHH
Confidence 7643222 222334578889999999999999999999999999999999998853210 00 0000111
Q ss_pred HHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1028 NFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
..+.... + ...+......+.+++.+||+.||++|||++|+++.|+++...
T Consensus 243 ~~~~~~~--------~----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~ 292 (295)
T 3ugc_A 243 ELLKNNG--------R----LPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDN 292 (295)
T ss_dssp HHHHTTC--------C----CCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHhccC--------c----CCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence 1111110 0 111222335688999999999999999999999999998764
No 96
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.1e-39 Score=361.22 Aligned_cols=253 Identities=25% Similarity=0.317 Sum_probs=207.9
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCC---hhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGN---NNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 884 (1114)
++|++.+.||+|+||+||+|+.+ +|+.||+|++....... ....+.+.+|+.+++.++||||+++++++.+.+..+
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 90 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 90 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 67999999999999999999986 68999999997654322 123567899999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC----CeEEeeccCce
Q 001253 885 LMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF----EAHVGDFGLAK 960 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~DfG~a~ 960 (1114)
+||||+++|+|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||+++
T Consensus 91 lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~ 166 (326)
T 2y0a_A 91 LILELVAGGELFDFLAE-KESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH 166 (326)
T ss_dssp EEEECCCSCBHHHHHTT-SSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred EEEEcCCCCCHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECCCCe
Confidence 99999999999999974 45799999999999999999999998 999999999999999887 79999999998
Q ss_pred ecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 961 VIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 961 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
..... .......||+.|+|||++.+..++.++||||+||++|+|++|+.||.... ............ .
T Consensus 167 ~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~~~~~~~~~-~----- 234 (326)
T 2y0a_A 167 KIDFG--NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT----KQETLANVSAVN-Y----- 234 (326)
T ss_dssp ECCTT--SCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS----HHHHHHHHHHTC-C-----
T ss_pred ECCCC--CccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCC----HHHHHHHHHhcC-C-----
Confidence 76422 23345679999999999999999999999999999999999999996432 222222221111 0
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.............+.+++.+||+.||++|||+.|+++
T Consensus 235 ----~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 235 ----EFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp ----CCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ----CcCccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0000011112346789999999999999999999986
No 97
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=1.1e-38 Score=376.65 Aligned_cols=255 Identities=26% Similarity=0.420 Sum_probs=210.5
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC-ceE
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG-SNL 884 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~ 884 (1114)
+..++|++.++||+|+||+||+|.++ |+.||||+++... ..+.|.+|+.++++++||||+++++++...+ ..|
T Consensus 190 i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~ 263 (450)
T 1k9a_A 190 LNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLY 263 (450)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT-----TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEE
T ss_pred cChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch-----HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceE
Confidence 34578999999999999999999987 7899999997543 2467899999999999999999999987765 789
Q ss_pred EEEecCCCCCHHHHhccCCC-CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 885 LMYEYMARGSLGELLHGASS-TLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~-~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
+||||+++|+|.++++.... .+++..+..++.|+++||+|||+. +|+||||||+|||++.++.+||+|||+++...
T Consensus 264 iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~ 340 (450)
T 1k9a_A 264 IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEAS 340 (450)
T ss_dssp EEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCccccc
Confidence 99999999999999985543 479999999999999999999999 99999999999999999999999999998643
Q ss_pred CCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDA 1042 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1114)
.. .....+++.|+|||++.+..++.++|||||||++|||++ |+.||...... +....+ ..+.
T Consensus 341 ~~----~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~-~~~~~i----~~~~-------- 403 (450)
T 1k9a_A 341 ST----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK-DVVPRV----EKGY-------- 403 (450)
T ss_dssp ----------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTT-THHHHH----HTTC--------
T ss_pred cc----ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHH----HcCC--------
Confidence 21 223367889999999999999999999999999999998 99999765432 222222 1110
Q ss_pred cccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1043 RLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1043 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
+ ...+......+.++|.+||+.||++|||+.|+++.|+++....
T Consensus 404 ~----~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~~ 447 (450)
T 1k9a_A 404 K----MDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTHE 447 (450)
T ss_dssp C----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred C----CCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHhh
Confidence 0 1111223356889999999999999999999999999987653
No 98
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=370.96 Aligned_cols=252 Identities=23% Similarity=0.290 Sum_probs=202.3
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceE
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 884 (1114)
..++|++.++||+|+||+||+|+.+ +|+.||||++.+.........+.+.+|..+++.+ +||||+++++++.+.+..|
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 3478999999999999999999976 6899999999865332333356678899999988 7999999999999999999
Q ss_pred EEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCC
Q 001253 885 LMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDM 964 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~ 964 (1114)
+||||+++|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+|+....
T Consensus 101 lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~ 176 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQKS-RRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC 176 (353)
T ss_dssp EEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred EEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeeccc
Confidence 999999999999999743 5689999999999999999999999 999999999999999999999999999985432
Q ss_pred CCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccc
Q 001253 965 PQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARL 1044 (1114)
Q Consensus 965 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1114)
........+||+.|+|||++.+..++.++||||+||++|||++|+.||.... ..+......... .
T Consensus 177 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~----~~~~~~~i~~~~----------~ 241 (353)
T 3txo_A 177 -NGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAEN----EDDLFEAILNDE----------V 241 (353)
T ss_dssp ----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCC----------C
T ss_pred -CCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCC----HHHHHHHHHcCC----------C
Confidence 2233456789999999999999999999999999999999999999997533 222233222211 1
Q ss_pred cCCCcccHHHHHHHHHHHhhccCCCCCCCCCH------HHHHH
Q 001253 1045 NLQDEKTVSHMITVLKIAMLCTNISPFDRPTM------REVVL 1081 (1114)
Q Consensus 1045 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~------~evl~ 1081 (1114)
. .+......+.+++.+||+.||++||++ .|+++
T Consensus 242 ~----~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~ 280 (353)
T 3txo_A 242 V----YPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR 280 (353)
T ss_dssp C----CCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred C----CCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence 1 111123467889999999999999998 66654
No 99
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=358.22 Aligned_cols=247 Identities=22% Similarity=0.261 Sum_probs=196.0
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 885 (1114)
.++|++.++||+|+||+||+|+++ +|+.||||++.......... ..+..|+..+.++ +||||+++++++.+++..++
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~-~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~l 134 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDR-ARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYL 134 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHH-HHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHH-HHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEE
Confidence 368999999999999999999987 79999999987655443333 3344455544444 99999999999999999999
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCC
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~ 965 (1114)
||||+ +++|.+++......+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||+++.....
T Consensus 135 v~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~ 210 (311)
T 3p1a_A 135 QTELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTA 210 (311)
T ss_dssp EEECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC--
T ss_pred EEecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeecccC
Confidence 99999 5699999887677899999999999999999999998 9999999999999999999999999999876432
Q ss_pred CCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc
Q 001253 966 QSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 966 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
.......||+.|+|||++.+ .++.++|||||||++|||++|..|+.... . ... +..... ..
T Consensus 211 --~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~------~-~~~-~~~~~~-----~~--- 271 (311)
T 3p1a_A 211 --GAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGE------G-WQQ-LRQGYL-----PP--- 271 (311)
T ss_dssp ------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHH------H-HHH-HTTTCC-----CH---
T ss_pred --CCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCcc------H-HHH-HhccCC-----Cc---
Confidence 23344579999999998876 79999999999999999999977764211 1 111 111110 00
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.........+.+++.+||++||++|||++|+++
T Consensus 272 ---~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 272 ---EFTAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp ---HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ---ccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 111122356889999999999999999999885
No 100
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.2e-39 Score=366.99 Aligned_cols=265 Identities=24% Similarity=0.383 Sum_probs=213.1
Q ss_pred HHHHhcCCcCCceecccCCeEEEEEEeC------CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeE
Q 001253 804 LVVATDNFDERFVIGRGACGTVYRAVLR------TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGF 876 (1114)
Q Consensus 804 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~ 876 (1114)
+.+..++|++.+.||+|+||+||+|++. ++..||||++...... ...+.+.+|+.+++++ +||||++++++
T Consensus 40 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~~hp~iv~~~~~ 117 (344)
T 1rjb_A 40 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADS--SEREALMSELKMMTQLGSHENIVNLLGA 117 (344)
T ss_dssp GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC--------CHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred cccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCH--HHHHHHHHHHHHHHhhcCCCCeeeEEEE
Confidence 4456688999999999999999999962 4568999999754322 2356788999999999 89999999999
Q ss_pred EEecCceEEEEecCCCCCHHHHhccCCC----------------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 001253 877 CYHQGSNLLMYEYMARGSLGELLHGASS----------------------TLDWQTRFMIALGAAEGLSYLHHDCKPRIF 934 (1114)
Q Consensus 877 ~~~~~~~~lv~E~~~~gsL~~~l~~~~~----------------------~l~~~~~~~i~~~i~~~L~~LH~~~~~~iv 934 (1114)
+...+..++||||+++|+|.+++..... .+++..+..++.|+++||+|||+. +|+
T Consensus 118 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~iv 194 (344)
T 1rjb_A 118 CTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCV 194 (344)
T ss_dssp ECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred EeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 9999999999999999999999975432 378999999999999999999999 999
Q ss_pred ecCCCCCCeEECCCCCeEEeeccCceecCCCCCC-ccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCC
Q 001253 935 HRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQSK-SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAP 1012 (1114)
Q Consensus 935 H~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p 1012 (1114)
||||||+||+++.++.+||+|||++......... ......||+.|+|||++.+..++.++|||||||++|||++ |..|
T Consensus 195 H~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p 274 (344)
T 1rjb_A 195 HRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNP 274 (344)
T ss_dssp ETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred cCCCChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999866433222 2334567889999999999999999999999999999998 9999
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1013 VQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
|............ +..... ...+......+.+++.+||+.||.+|||+.|+++.|+.+...
T Consensus 275 ~~~~~~~~~~~~~----~~~~~~------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 335 (344)
T 1rjb_A 275 YPGIPVDANFYKL----IQNGFK------------MDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLAD 335 (344)
T ss_dssp STTCCCSHHHHHH----HHTTCC------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred cccCCcHHHHHHH----HhcCCC------------CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 9765443322222 222110 011112234688999999999999999999999999998554
No 101
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=373.42 Aligned_cols=260 Identities=26% Similarity=0.350 Sum_probs=210.4
Q ss_pred hcCCcCCceecccCCeEEEEEEeC------CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR------TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG 881 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 881 (1114)
.++|++.++||+|+||+||+|++. +++.||||+++... .......+.+|+.++++++||||+++++++.+..
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~ 147 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC--SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL 147 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccccc--ChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Confidence 467999999999999999999953 46789999986433 2334557889999999999999999999999999
Q ss_pred ceEEEEecCCCCCHHHHhccCC------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC---CeE
Q 001253 882 SNLLMYEYMARGSLGELLHGAS------STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF---EAH 952 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~------~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~k 952 (1114)
..++||||+++|+|.++++... ..+++.++..++.|+++||+|||+. +|+||||||+|||++.++ .+|
T Consensus 148 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~k 224 (367)
T 3l9p_A 148 PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 224 (367)
T ss_dssp SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEE
T ss_pred CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEE
Confidence 9999999999999999997432 4689999999999999999999999 999999999999999555 599
Q ss_pred EeeccCceecCCC-CCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHH
Q 001253 953 VGDFGLAKVIDMP-QSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFI 1030 (1114)
Q Consensus 953 l~DfG~a~~~~~~-~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~ 1030 (1114)
|+|||+++..... .........||+.|+|||++.+..++.++|||||||++|||++ |..||.... ....... +
T Consensus 225 L~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~----~~~~~~~-i 299 (367)
T 3l9p_A 225 IGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS----NQEVLEF-V 299 (367)
T ss_dssp ECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC----HHHHHHH-H
T ss_pred ECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC----HHHHHHH-H
Confidence 9999999754322 2223344568999999999999999999999999999999998 999996433 2222222 2
Q ss_pred hcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1031 RNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
..... ...+......+.+++.+||+.||++|||+.|+++.|+.+...
T Consensus 300 ~~~~~------------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~ 346 (367)
T 3l9p_A 300 TSGGR------------MDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 346 (367)
T ss_dssp HTTCC------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HcCCC------------CCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence 22111 011112234688999999999999999999999999998654
No 102
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=1e-38 Score=362.75 Aligned_cols=250 Identities=22% Similarity=0.304 Sum_probs=205.6
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 886 (1114)
++|++.+.||+|+||+||+|+.+ +++.||+|++.+.........+.+.+|..+++++ +||||+++++++.+.+..|+|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 67999999999999999999986 6899999999877655555566788999999887 899999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.... .
T Consensus 89 ~e~~~gg~L~~~l~~~-~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~-~ 163 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQ-RKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR-P 163 (345)
T ss_dssp ECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSCC-T
T ss_pred EeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccccC-C
Confidence 9999999999999743 4689999999999999999999999 999999999999999999999999999986432 2
Q ss_pred CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCC----CHHHHHHHHHhcCCcccccccc
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGG----DLVTWVRNFIRNNSLVSGMLDA 1042 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 1042 (1114)
.......+||+.|+|||++.+..++.++||||+||++|||++|+.||....... .....+...+....
T Consensus 164 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~-------- 235 (345)
T 3a8x_A 164 GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ-------- 235 (345)
T ss_dssp TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCC--------
T ss_pred CCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCC--------
Confidence 233456789999999999999999999999999999999999999997533211 11122222221111
Q ss_pred cccCCCcccHHHHHHHHHHHhhccCCCCCCCCCH
Q 001253 1043 RLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTM 1076 (1114)
Q Consensus 1043 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 1076 (1114)
.. .+......+.+++.+||+.||++||++
T Consensus 236 -~~----~p~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 236 -IR----IPRSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp -CC----CCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred -CC----CCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 11 111223468899999999999999996
No 103
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=2.4e-38 Score=351.64 Aligned_cols=256 Identities=28% Similarity=0.471 Sum_probs=207.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhh----HHHHHHHHHHHhcCCCCceeeEEeEEEecCc
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNV----DNSFRAEILTLGKIRHRNIVKLYGFCYHQGS 882 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~----~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 882 (1114)
.++|++.+.||+|+||+||+|++. +++.||+|++.......... .+.+.+|+.++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 478999999999999999999985 78999999997654433221 167889999999999999999999986544
Q ss_pred eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEecCCCCCCeEECCCCC-----eEEee
Q 001253 883 NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPR--IFHRDIKSNNILLDDKFE-----AHVGD 955 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~Nill~~~~~-----~kl~D 955 (1114)
++||||+++|+|.+.+......+++..+..++.|++.||+|||+. + |+||||||+||+++.++. +||+|
T Consensus 97 -~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~kl~D 172 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAKVAD 172 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEEECC
T ss_pred -eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEEeCC
Confidence 799999999999999987777899999999999999999999998 7 999999999999988776 99999
Q ss_pred ccCceecCCCCCCccccccccccccCcccc--ccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcC
Q 001253 956 FGLAKVIDMPQSKSMSAIAGSYGYIAPEYA--YTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNN 1033 (1114)
Q Consensus 956 fG~a~~~~~~~~~~~~~~~g~~~y~aPE~~--~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 1033 (1114)
||+++... .......||+.|+|||++ ....++.++||||+||++|||++|+.||...... ............
T Consensus 173 fg~~~~~~----~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--~~~~~~~~~~~~ 246 (287)
T 4f0f_A 173 FGLSQQSV----HSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYG--KIKFINMIREEG 246 (287)
T ss_dssp CTTCBCCS----SCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCC--HHHHHHHHHHSC
T ss_pred CCcccccc----ccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCcccccc--HHHHHHHHhccC
Confidence 99998533 233456799999999998 4556788999999999999999999999754432 222222222211
Q ss_pred CcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhh
Q 001253 1034 SLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSES 1086 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1086 (1114)
.. ...+......+.+++.+||+.||++|||++|+++.|+++
T Consensus 247 -~~-----------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 247 -LR-----------PTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp -CC-----------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred -CC-----------CCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 10 111122234688999999999999999999999999874
No 104
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=6.9e-39 Score=359.78 Aligned_cols=247 Identities=24% Similarity=0.311 Sum_probs=206.5
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.+.||+|+||+||+|+.+ +|+.||+|++.+.........+.+.+|+.+++.++||||+++++++.+.+..|+||
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~ 85 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 85 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence 67999999999999999999986 79999999997653222223566788999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+++|+|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 86 e~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~--- 158 (318)
T 1fot_A 86 DYIEGGELFSLLRK-SQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPD--- 158 (318)
T ss_dssp CCCCSCBHHHHHHH-TSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSS---
T ss_pred eCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCC---
Confidence 99999999999974 34689999999999999999999998 999999999999999999999999999987542
Q ss_pred CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccCC
Q 001253 968 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQ 1047 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1114)
.....+||+.|+|||++.+..++.++||||+||++|||++|+.||.... ............ ..
T Consensus 159 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~----~~~~~~~i~~~~----------~~-- 221 (318)
T 1fot_A 159 -VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN----TMKTYEKILNAE----------LR-- 221 (318)
T ss_dssp -CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHHCC----------CC--
T ss_pred -ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC----HHHHHHHHHhCC----------CC--
Confidence 2345689999999999999999999999999999999999999997532 222333322211 11
Q ss_pred CcccHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 001253 1048 DEKTVSHMITVLKIAMLCTNISPFDRP-----TMREVVL 1081 (1114)
Q Consensus 1048 ~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1081 (1114)
.+......+.+++.+|++.||++|| +++|+++
T Consensus 222 --~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 222 --FPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp --CCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred --CCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 1111234688999999999999999 8888873
No 105
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=8.9e-39 Score=366.08 Aligned_cols=253 Identities=24% Similarity=0.326 Sum_probs=207.8
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|+.+ +|+.||+|++...... ....+.+.+|+.+++.++||||+++++++.+++..|+|
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 106 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 106 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 468999999999999999999976 6899999999765443 33456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC---CeEEeeccCceecC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF---EAHVGDFGLAKVID 963 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~kl~DfG~a~~~~ 963 (1114)
|||+++|+|.+++.. ...+++..+..++.|+++||+|||+. +|+||||||+||+++.++ .+||+|||+++...
T Consensus 107 ~e~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~ 182 (362)
T 2bdw_A 107 FDLVTGGELFEDIVA-REFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 182 (362)
T ss_dssp ECCCCSCBHHHHHTT-CSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCT
T ss_pred EecCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceEec
Confidence 999999999999874 45789999999999999999999999 999999999999998654 59999999998764
Q ss_pred CCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDAR 1043 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
. ........||+.|+|||++.+..++.++||||+||++|+|++|+.||.... .......... +.+
T Consensus 183 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~----~~~~~~~i~~-~~~-------- 247 (362)
T 2bdw_A 183 D--SEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED----QHRLYAQIKA-GAY-------- 247 (362)
T ss_dssp T--CCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHH-TCC--------
T ss_pred C--CcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC----HHHHHHHHHh-CCC--------
Confidence 2 223345689999999999999999999999999999999999999997433 2222222211 111
Q ss_pred ccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1044 LNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1044 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.............+.+++.+||+.||++|||+.|+++
T Consensus 248 -~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 284 (362)
T 2bdw_A 248 -DYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 284 (362)
T ss_dssp -CCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred -CCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 0011111122346889999999999999999999875
No 106
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=7.1e-39 Score=361.43 Aligned_cols=253 Identities=26% Similarity=0.371 Sum_probs=204.0
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.++||+|+||+||+|+++ +++.||||++....... ..+.+.+|+.+++.++||||+++++++.+++..|+||
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~ 84 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVD--CPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL 84 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC---------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccc--hHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence 68999999999999999999987 78999999996544322 2356889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC-
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ- 966 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~- 966 (1114)
||+++|+|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.+....
T Consensus 85 e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 160 (323)
T 3tki_A 85 EYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160 (323)
T ss_dssp ECCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred EcCCCCcHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccCCc
Confidence 99999999999974 44699999999999999999999998 99999999999999999999999999998654222
Q ss_pred CCccccccccccccCccccccCCC-CcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~-~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
........||+.|+|||++.+..+ +.++||||+||++|||++|+.||.......... ..........
T Consensus 161 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~---~~~~~~~~~~--------- 228 (323)
T 3tki_A 161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY---SDWKEKKTYL--------- 228 (323)
T ss_dssp ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHH---HHHHTTCTTS---------
T ss_pred ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHH---HHHhcccccC---------
Confidence 222345689999999999987775 778999999999999999999997544332211 1111111100
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLM 1082 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 1082 (1114)
.........+.+++.+||+.||++|||++|+++.
T Consensus 229 ---~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 229 ---NPWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (323)
T ss_dssp ---TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred ---CccccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 0111223467889999999999999999998763
No 107
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.1e-39 Score=384.36 Aligned_cols=349 Identities=17% Similarity=0.142 Sum_probs=224.1
Q ss_pred ceeecccccccCcccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecc
Q 001253 345 ELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDN 424 (1114)
Q Consensus 345 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 424 (1114)
+.++.+++.++.+ |..+. ++++.|+|++|+|++..+..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~i-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAV-PEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSC-CSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcC-CCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4566666666643 43332 46777777777777666667777777777777777776666666666677777777776
Q ss_pred cccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccc
Q 001253 425 HLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPT 504 (1114)
Q Consensus 425 ~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 504 (1114)
++++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 66655555566666666666666666655555666666666666666666655555566666666666666666555455
Q ss_pred cccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccC
Q 001253 505 EIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQL 584 (1114)
Q Consensus 505 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 584 (1114)
.|.++++|+.|+|++|.+++..+..|..+++|+.|++++|.+.+.+|.......+|+.|+|++|++++.
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----------- 239 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV----------- 239 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC-----------
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc-----------
Confidence 555566666666666665555555555555555555555555545554444444555555555555433
Q ss_pred CeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccC
Q 001253 585 ELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNN 664 (1114)
Q Consensus 585 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 664 (1114)
.+..+.++++|+.|+|++|++++..+..|..+.+|+ .|+|++|++++..|..|.++++|+.|||++
T Consensus 240 -------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 240 -------------PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ-EIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp -------------CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCC-EEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred -------------CHHHhcCccccCeeECCCCcCCccChhhccccccCC-EEECCCCccceECHHHhcCcccCCEEECCC
Confidence 223444455555555555555544444555555555 566666666666677777788888888888
Q ss_pred cccccCCCCccccccccceEEeccCcccCCCCCcccccccccccccCCCCCCCCCCC
Q 001253 665 NHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPSSQTFQNMSVNSFSGSKGLCGGPLQ 721 (1114)
Q Consensus 665 N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~p~~ 721 (1114)
|+|++..+..|..+++|+.|++++|+|.|.++..|.+++.....+.++...|+.|..
T Consensus 306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 306 NQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp SCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGG
T ss_pred CcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchH
Confidence 888887777888888999999999999988887766666555667777788887653
No 108
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=9.9e-39 Score=374.03 Aligned_cols=254 Identities=21% Similarity=0.276 Sum_probs=206.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.++||+|+||+||+|..+ +|+.||+|++...... ....+.+.+|+.+++.++||||+++++++.+++..|+|
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLS-ARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCH-HHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCC-HHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 478999999999999999999976 7899999999765432 23356788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEEC---CCCCeEEeeccCceecC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLD---DKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~---~~~~~kl~DfG~a~~~~ 963 (1114)
|||+++|+|.+.+... ..+++..+..++.|+++||+|||+. +|+||||||+||+++ .++.+||+|||+++...
T Consensus 89 ~E~~~gg~L~~~i~~~-~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~ 164 (444)
T 3soa_A 89 FDLVTGGELFEDIVAR-EYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVE 164 (444)
T ss_dssp ECCCBCCBHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCC
T ss_pred EEeCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeEEec
Confidence 9999999999998743 5699999999999999999999999 999999999999998 56789999999998764
Q ss_pred CCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDAR 1043 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
.. ........||+.|+|||++.+..++.++||||+||++|+|++|+.||.... ........... .+
T Consensus 165 ~~-~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~----~~~~~~~i~~~-~~-------- 230 (444)
T 3soa_A 165 GE-QQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDED----QHRLYQQIKAG-AY-------- 230 (444)
T ss_dssp TT-CCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSS----HHHHHHHHHHT-CC--------
T ss_pred CC-CceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCcc----HHHHHHHHHhC-CC--------
Confidence 32 233345689999999999999999999999999999999999999996433 22222222211 11
Q ss_pred ccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1044 LNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1044 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.............+.+++.+||+.||++|||+.|+++
T Consensus 231 -~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 231 -DFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp -CCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred -CCCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0011111122346889999999999999999999986
No 109
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=1.2e-38 Score=354.16 Aligned_cols=264 Identities=27% Similarity=0.442 Sum_probs=201.8
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEE
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 885 (1114)
+..++|++.++||+|+||+||+|+++ ..||+|+++.... .....+.+.+|+.++++++||||+++++++ .....++
T Consensus 21 i~~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~l 96 (289)
T 3og7_A 21 IPDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAP-TPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAI 96 (289)
T ss_dssp CCTTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEE
T ss_pred cCccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCC-CHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEE
Confidence 44578999999999999999999875 3699999976544 334456789999999999999999999965 5567899
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCC
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~ 965 (1114)
||||+++++|.+++......+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 97 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 173 (289)
T 3og7_A 97 VTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRW 173 (289)
T ss_dssp EEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC--------
T ss_pred EEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceeccccccc
Confidence 9999999999999987777899999999999999999999999 9999999999999999999999999999865422
Q ss_pred -CCCccccccccccccCccccc---cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccc
Q 001253 966 -QSKSMSAIAGSYGYIAPEYAY---TMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLD 1041 (1114)
Q Consensus 966 -~~~~~~~~~g~~~y~aPE~~~---~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1114)
.........||+.|+|||++. +..++.++||||+|+++|||++|+.||........ +...+.........
T Consensus 174 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~-- 247 (289)
T 3og7_A 174 SGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ----IIEMVGRGSLSPDL-- 247 (289)
T ss_dssp ----------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHH----HHHHHHHTSCCCCT--
T ss_pred cccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHH----HHHHhcccccCcch--
Confidence 222334567999999999986 66788899999999999999999999975443222 22222222111110
Q ss_pred ccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001253 1042 ARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNR 1088 (1114)
Q Consensus 1042 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~ 1088 (1114)
..........+.+++.+||+.||.+|||++|+++.|+++.+
T Consensus 248 ------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 248 ------SKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp ------TSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred ------hhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 01111223468899999999999999999999999999854
No 110
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=6.3e-39 Score=382.92 Aligned_cols=259 Identities=24% Similarity=0.407 Sum_probs=214.9
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceE
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 884 (1114)
+..++|++.++||+|+||+||+|+++ ++..||||+++..... .+.|.+|+.++++++||||++++++|.+.+..+
T Consensus 217 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~ 292 (495)
T 1opk_A 217 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME----VEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFY 292 (495)
T ss_dssp CCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSC----HHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred cCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccc----hHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEE
Confidence 34577999999999999999999987 4889999999754332 567899999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 885 LMYEYMARGSLGELLHGA-SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
+||||+++|+|.++++.. ...+++..+..++.|+++||+|||++ +|+||||||+|||++.++.+||+|||+++...
T Consensus 293 lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 369 (495)
T 1opk_A 293 IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMT 369 (495)
T ss_dssp EEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCT
T ss_pred EEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceecc
Confidence 999999999999999753 35689999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDA 1042 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1114)
...........+++.|+|||++.+..++.++|||||||++|||++ |+.||...... ...+. +....
T Consensus 370 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~-~~~~~----~~~~~-------- 436 (495)
T 1opk_A 370 GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS-QVYEL----LEKDY-------- 436 (495)
T ss_dssp TCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG-GHHHH----HHTTC--------
T ss_pred CCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHH-HHHHH----HHcCC--------
Confidence 333233334457789999999999999999999999999999999 99999754422 22222 21110
Q ss_pred cccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001253 1043 RLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNR 1088 (1114)
Q Consensus 1043 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~ 1088 (1114)
+ ...+......+.++|.+||+.||++|||+.|+++.|+++..
T Consensus 437 ~----~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~ 478 (495)
T 1opk_A 437 R----MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 478 (495)
T ss_dssp C----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred C----CCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence 0 11112233468899999999999999999999999998754
No 111
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=5.4e-39 Score=365.04 Aligned_cols=266 Identities=26% Similarity=0.427 Sum_probs=215.3
Q ss_pred HHHHHhcCCcCCceecccCCeEEEEEEeC-CC-----cEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEe
Q 001253 803 DLVVATDNFDERFVIGRGACGTVYRAVLR-TG-----HTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYG 875 (1114)
Q Consensus 803 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g-----~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~ 875 (1114)
++....++|++.+.||+|+||+||+|++. ++ ..||+|++..... ....+.+.+|+.+++.+ +||||+++++
T Consensus 40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~iv~~~~ 117 (333)
T 2i1m_A 40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAH--ADEKEALMSELKIMSHLGQHENIVNLLG 117 (333)
T ss_dssp GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccC--hHHHHHHHHHHHHHHhhcCCCCeeeEEE
Confidence 34456688999999999999999999975 22 4899999975542 23456788999999999 8999999999
Q ss_pred EEEecCceEEEEecCCCCCHHHHhccC-------------CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCC
Q 001253 876 FCYHQGSNLLMYEYMARGSLGELLHGA-------------SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNN 942 (1114)
Q Consensus 876 ~~~~~~~~~lv~E~~~~gsL~~~l~~~-------------~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~N 942 (1114)
++.+.+..++||||+++|+|.+++... ...+++..+..++.|++.||+|||+. +|+||||||+|
T Consensus 118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~N 194 (333)
T 2i1m_A 118 ACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARN 194 (333)
T ss_dssp EECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGG
T ss_pred EEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccce
Confidence 999999999999999999999998642 34679999999999999999999999 99999999999
Q ss_pred eEECCCCCeEEeeccCceecCCCCCC-ccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCC
Q 001253 943 ILLDDKFEAHVGDFGLAKVIDMPQSK-SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGG 1020 (1114)
Q Consensus 943 ill~~~~~~kl~DfG~a~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~ 1020 (1114)
|+++.++.+||+|||+++........ ......+|+.|+|||++.+..++.++|||||||++|||++ |..||.......
T Consensus 195 Il~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~ 274 (333)
T 2i1m_A 195 VLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNS 274 (333)
T ss_dssp CEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSH
T ss_pred EEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhH
Confidence 99999999999999999865433222 2234567889999999999999999999999999999998 999997654433
Q ss_pred CHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1021 DLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
.....+.. ... ...+......+.+++.+||+.||.+|||+.|+++.|+++...
T Consensus 275 ~~~~~~~~----~~~------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~ 327 (333)
T 2i1m_A 275 KFYKLVKD----GYQ------------MAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQE 327 (333)
T ss_dssp HHHHHHHH----TCC------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc----CCC------------CCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHh
Confidence 22222221 100 001111234688999999999999999999999999988553
No 112
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=1.6e-39 Score=368.46 Aligned_cols=252 Identities=23% Similarity=0.317 Sum_probs=205.2
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCce
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSN 883 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 883 (1114)
...++|++.+.||+|+||+||+|+.+ +|+.||||+++..........+.+..|..+++.+ +||||+++++++.+.+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 44578999999999999999999986 6899999999765322122345677888888876 999999999999999999
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
|+||||+++|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 94 ~lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 169 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSC-HKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKENM 169 (345)
T ss_dssp EEEEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEEeCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhhhcc
Confidence 9999999999999999743 4689999999999999999999999 99999999999999999999999999998643
Q ss_pred CCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDAR 1043 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
. ........+||+.|+|||++.+..++.++||||+||++|||++|+.||.... .....+.......
T Consensus 170 ~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~----~~~~~~~i~~~~~--------- 235 (345)
T 1xjd_A 170 L-GDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD----EEELFHSIRMDNP--------- 235 (345)
T ss_dssp C-TTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCCC---------
T ss_pred c-CCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCC----HHHHHHHHHhCCC---------
Confidence 2 2233456789999999999999999999999999999999999999997433 2222222222110
Q ss_pred ccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHH-HHH
Q 001253 1044 LNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMR-EVV 1080 (1114)
Q Consensus 1044 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~-evl 1080 (1114)
..+......+.+++.+||+.||++||++. |++
T Consensus 236 -----~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 236 -----FYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp -----CCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred -----CCCcccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 01111234678999999999999999997 554
No 113
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=367.53 Aligned_cols=276 Identities=21% Similarity=0.269 Sum_probs=222.4
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC--ceE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG--SNL 884 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~ 884 (1114)
.++|++.++||+|+||+||+|+++ +|+.||||++....... ..+.+.+|+.++++++||||+++++++...+ ..+
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~--~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 85 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLR--PVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKV 85 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGS--CHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccc--hHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeE
Confidence 367999999999999999999987 68999999997544322 2566788999999999999999999998765 679
Q ss_pred EEEecCCCCCHHHHhccCCC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEE----CCCCCeEEeeccC
Q 001253 885 LMYEYMARGSLGELLHGASS--TLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILL----DDKFEAHVGDFGL 958 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~--~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill----~~~~~~kl~DfG~ 958 (1114)
+||||+++|+|.++++.... .+++..+..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+
T Consensus 86 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~ 162 (396)
T 4eut_A 86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA 162 (396)
T ss_dssp EEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGG
T ss_pred EEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCC
Confidence 99999999999999975332 389999999999999999999999 99999999999999 7788899999999
Q ss_pred ceecCCCCCCccccccccccccCcccccc--------CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHH
Q 001253 959 AKVIDMPQSKSMSAIAGSYGYIAPEYAYT--------MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFI 1030 (1114)
Q Consensus 959 a~~~~~~~~~~~~~~~g~~~y~aPE~~~~--------~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~ 1030 (1114)
++.... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||..........+.+....
T Consensus 163 a~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~ 240 (396)
T 4eut_A 163 ARELED--DEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKII 240 (396)
T ss_dssp CEECCC--GGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHH
T ss_pred ceEccC--CCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHh
Confidence 987642 223345679999999999865 5678899999999999999999999987665555555555544
Q ss_pred hcCCcc--cc---------cccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1031 RNNSLV--SG---------MLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1031 ~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
...... .. .+.................+.+++.+||++||++||+++|+++.++++..+.
T Consensus 241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~~ 311 (396)
T 4eut_A 241 TGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHRM 311 (396)
T ss_dssp HSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTCE
T ss_pred cCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhce
Confidence 432110 00 0111222223334567778899999999999999999999999999986553
No 114
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=1.4e-38 Score=366.47 Aligned_cols=251 Identities=22% Similarity=0.281 Sum_probs=208.2
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.+.||+|+||+||+|+.+ +|+.||+|++..... .....+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~---~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 127 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYP---LDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLIL 127 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSH---HHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccch---hhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEE
Confidence 67999999999999999999986 789999999875432 23456889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC--CCCeEEeeccCceecCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD--KFEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~--~~~~kl~DfG~a~~~~~~ 965 (1114)
||+++|+|.+++......+++..+..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||+++....
T Consensus 128 E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~- 203 (387)
T 1kob_A 128 EFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP- 203 (387)
T ss_dssp ECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT-
T ss_pred EcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecCC-
Confidence 99999999999986666899999999999999999999999 9999999999999974 57799999999987643
Q ss_pred CCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc
Q 001253 966 QSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 966 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
........||+.|+|||++.+..++.++||||+||++|||++|+.||.... ..............
T Consensus 204 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~----~~~~~~~i~~~~~~---------- 268 (387)
T 1kob_A 204 -DEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED----DLETLQNVKRCDWE---------- 268 (387)
T ss_dssp -TSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS----HHHHHHHHHHCCCC----------
T ss_pred -CcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCC----HHHHHHHHHhCCCC----------
Confidence 223345579999999999999999999999999999999999999997532 22223222221110
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
............+.+++.+||+.||++|||+.|+++
T Consensus 269 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 269 FDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp CCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred CCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 001111122346889999999999999999999986
No 115
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=5.4e-39 Score=355.22 Aligned_cols=261 Identities=26% Similarity=0.408 Sum_probs=213.9
Q ss_pred HHHHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce
Q 001253 804 LVVATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN 883 (1114)
Q Consensus 804 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 883 (1114)
+.+..++|++.+.||+|+||+||+|+.++++.||||++...... .+.+.+|+.+++.++||||+++++++. .+..
T Consensus 8 ~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~ 82 (279)
T 1qpc_A 8 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS----PDAFLAEANLMKQLQHQRLVRLYAVVT-QEPI 82 (279)
T ss_dssp TBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSC----HHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSC
T ss_pred cccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCccc----HHHHHHHHHHHHhCCCcCcceEEEEEc-CCCc
Confidence 34556789999999999999999999988889999999754432 567889999999999999999999986 4568
Q ss_pred EEEEecCCCCCHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 884 LLMYEYMARGSLGELLHGAS-STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
++||||+++++|.+++.... ..+++..+..++.|+++||+|||+. +|+||||||+||++++++.+||+|||.++..
T Consensus 83 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~ 159 (279)
T 1qpc_A 83 YIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLI 159 (279)
T ss_dssp EEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccc
Confidence 99999999999999997432 2689999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCccccccc
Q 001253 963 DMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLD 1041 (1114)
Q Consensus 963 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1114)
............+++.|+|||++.+..++.++||||+|+++|||++ |+.||..... .+..........
T Consensus 160 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~----~~~~~~~~~~~~------- 228 (279)
T 1qpc_A 160 EDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN----PEVIQNLERGYR------- 228 (279)
T ss_dssp SSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH----HHHHHHHHTTCC-------
T ss_pred cCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCH----HHHHHHHhcccC-------
Confidence 5433333344567889999999998889999999999999999999 8999864332 222222211100
Q ss_pred ccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1042 ARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1042 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
...+......+.+++.+||+.||++|||++++++.|+++...
T Consensus 229 ------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 270 (279)
T 1qpc_A 229 ------MVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA 270 (279)
T ss_dssp ------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ------CCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHh
Confidence 001112234688999999999999999999999999998654
No 116
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=4.4e-39 Score=367.49 Aligned_cols=264 Identities=27% Similarity=0.457 Sum_probs=214.3
Q ss_pred HHHhcCCcCCceecccCCeEEEEEEeC------CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEE
Q 001253 805 VVATDNFDERFVIGRGACGTVYRAVLR------TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCY 878 (1114)
Q Consensus 805 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 878 (1114)
....++|++.+.||+|+||+||+|+++ +++.||||+++... .....+.+.+|+.++++++||||+++++++.
T Consensus 43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~ 120 (343)
T 1luf_A 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEA--SADMQADFQREAALMAEFDNPNIVKLLGVCA 120 (343)
T ss_dssp BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEecccc--CHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc
Confidence 345688999999999999999999974 34889999997543 2344677899999999999999999999999
Q ss_pred ecCceEEEEecCCCCCHHHHhccCC-----------------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEe
Q 001253 879 HQGSNLLMYEYMARGSLGELLHGAS-----------------------STLDWQTRFMIALGAAEGLSYLHHDCKPRIFH 935 (1114)
Q Consensus 879 ~~~~~~lv~E~~~~gsL~~~l~~~~-----------------------~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH 935 (1114)
+.+..++||||+++|+|.++++... ..+++.++..++.|+++||+|||+. +|+|
T Consensus 121 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH 197 (343)
T 1luf_A 121 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVH 197 (343)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCC
T ss_pred cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---Ceec
Confidence 9999999999999999999997532 5789999999999999999999999 9999
Q ss_pred cCCCCCCeEECCCCCeEEeeccCceecCCCCC-CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCC
Q 001253 936 RDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPV 1013 (1114)
Q Consensus 936 ~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~ 1013 (1114)
|||||+||+++.++.+||+|||+++....... .......+|+.|+|||++.+..++.++||||||+++|||++ |+.||
T Consensus 198 ~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~ 277 (343)
T 1luf_A 198 RDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPY 277 (343)
T ss_dssp SCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCCCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcC
Confidence 99999999999999999999999986532221 22334568899999999999999999999999999999999 99999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1014 QPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
.... ..+... .+..+... ..+......+.+++.+||+.||++|||+.|+++.|+++..+.
T Consensus 278 ~~~~----~~~~~~-~~~~~~~~------------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~ 337 (343)
T 1luf_A 278 YGMA----HEEVIY-YVRDGNIL------------ACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERA 337 (343)
T ss_dssp TTSC----HHHHHH-HHHTTCCC------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC--
T ss_pred CCCC----hHHHHH-HHhCCCcC------------CCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhh
Confidence 6432 222222 22222110 011122346889999999999999999999999999986643
No 117
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=9.7e-39 Score=359.65 Aligned_cols=264 Identities=25% Similarity=0.404 Sum_probs=216.5
Q ss_pred HHHhcCCcCCceecccCCeEEEEEEe------CCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEE
Q 001253 805 VVATDNFDERFVIGRGACGTVYRAVL------RTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFC 877 (1114)
Q Consensus 805 ~~~~~~~~~~~~lG~G~~g~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~ 877 (1114)
....++|++.+.||+|+||+||+|++ .+++.||||++..... ....+.+.+|+.+++++ +||||+++++++
T Consensus 19 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~ 96 (313)
T 1t46_A 19 EFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAH--LTEREALMSELKVLSYLGNHMNIVNLLGAC 96 (313)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred ccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchh--HHHHHHHHHHHHHHhhcccCCCeeeEEEEE
Confidence 34457899999999999999999985 2568999999975433 23356788999999999 999999999999
Q ss_pred EecCceEEEEecCCCCCHHHHhccCCC-----------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCC
Q 001253 878 YHQGSNLLMYEYMARGSLGELLHGASS-----------------TLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKS 940 (1114)
Q Consensus 878 ~~~~~~~lv~E~~~~gsL~~~l~~~~~-----------------~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~ 940 (1114)
.+++..++||||+++|+|.+++..... .+++..+..++.|+++||+|||+. +|+||||||
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp 173 (313)
T 1t46_A 97 TIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAA 173 (313)
T ss_dssp CSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSG
T ss_pred ecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCcc
Confidence 999999999999999999999975432 489999999999999999999999 999999999
Q ss_pred CCeEECCCCCeEEeeccCceecCCCCCC-ccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCC
Q 001253 941 NNILLDDKFEAHVGDFGLAKVIDMPQSK-SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQ 1018 (1114)
Q Consensus 941 ~Nill~~~~~~kl~DfG~a~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~ 1018 (1114)
+||+++.++.+||+|||+++........ ......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||.....
T Consensus 174 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~ 253 (313)
T 1t46_A 174 RNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV 253 (313)
T ss_dssp GGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS
T ss_pred ceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccc
Confidence 9999999999999999999876533322 2234567889999999999999999999999999999999 9999976554
Q ss_pred CCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1019 GGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
.......+.. .. . ...+......+.+++.+||+.||.+|||+.|+++.|+++...
T Consensus 254 ~~~~~~~~~~----~~------~------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 308 (313)
T 1t46_A 254 DSKFYKMIKE----GF------R------MLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE 308 (313)
T ss_dssp SHHHHHHHHH----TC------C------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHhcc----CC------C------CCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence 3322222221 10 0 001112234688999999999999999999999999998654
No 118
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=3e-39 Score=365.31 Aligned_cols=270 Identities=23% Similarity=0.378 Sum_probs=217.3
Q ss_pred CCHHHHHHHhcCCcCCceecccCCeEEEEEEeC------CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceee
Q 001253 799 FTFKDLVVATDNFDERFVIGRGACGTVYRAVLR------TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVK 872 (1114)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~ 872 (1114)
+..+++.+..++|++.+.||+|+||+||+|+++ +++.||||++..... ......+.+|+.+++.++||||++
T Consensus 15 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~ 92 (322)
T 1p4o_A 15 YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAAS--MRERIEFLNEASVMKEFNCHHVVR 92 (322)
T ss_dssp CCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSC--HHHHHHHHHHHHHGGGCCCTTBCC
T ss_pred cChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccC--HHHHHHHHHHHHHHHhcCCCCEee
Confidence 344455567789999999999999999999865 367899999875432 233556889999999999999999
Q ss_pred EEeEEEecCceEEEEecCCCCCHHHHhccCC---------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCe
Q 001253 873 LYGFCYHQGSNLLMYEYMARGSLGELLHGAS---------STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNI 943 (1114)
Q Consensus 873 l~~~~~~~~~~~lv~E~~~~gsL~~~l~~~~---------~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Ni 943 (1114)
+++++.+.+..++||||+++|+|.++++... ..+++..+..++.|++.||+|||+. +|+||||||+||
T Consensus 93 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NI 169 (322)
T 1p4o_A 93 LLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNC 169 (322)
T ss_dssp EEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGE
T ss_pred eEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceE
Confidence 9999999999999999999999999986421 4578999999999999999999999 999999999999
Q ss_pred EECCCCCeEEeeccCceecCCCCC-CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCC
Q 001253 944 LLDDKFEAHVGDFGLAKVIDMPQS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGD 1021 (1114)
Q Consensus 944 ll~~~~~~kl~DfG~a~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~ 1021 (1114)
+++.++.+||+|||+++....... .......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||....
T Consensus 170 li~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~---- 245 (322)
T 1p4o_A 170 MVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS---- 245 (322)
T ss_dssp EECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC----
T ss_pred EEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCC----
Confidence 999999999999999986542221 12233467889999999999999999999999999999999 888886432
Q ss_pred HHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1022 LVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
....... +...... ..+......+.+++.+||+.||++|||+.|+++.|+++....
T Consensus 246 ~~~~~~~-~~~~~~~------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~~ 301 (322)
T 1p4o_A 246 NEQVLRF-VMEGGLL------------DKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 301 (322)
T ss_dssp HHHHHHH-HHTTCCC------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTT
T ss_pred HHHHHHH-HHcCCcC------------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhccC
Confidence 2222222 2221110 011122346889999999999999999999999999986643
No 119
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=4.6e-39 Score=366.02 Aligned_cols=252 Identities=22% Similarity=0.280 Sum_probs=205.8
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceE
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 884 (1114)
..++|++.++||+|+||+||+|+.+ +|+.||+|++.+.........+.+..|..++..+ +||+|+++++++.+.+..|
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 3478999999999999999999987 5889999999765322223356678899999888 8999999999999999999
Q ss_pred EEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCC
Q 001253 885 LMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDM 964 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~ 964 (1114)
+||||++||+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 98 lv~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 173 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQV-GRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 173 (353)
T ss_dssp EEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEEeCCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCccccccc
Confidence 999999999999999743 4689999999999999999999999 999999999999999999999999999986432
Q ss_pred CCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccc
Q 001253 965 PQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARL 1044 (1114)
Q Consensus 965 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1114)
........+||+.|+|||++.+..++.++||||+||++|||++|+.||.... .....+...... .
T Consensus 174 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~----~~~~~~~i~~~~----------~ 238 (353)
T 2i0e_A 174 -DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED----EDELFQSIMEHN----------V 238 (353)
T ss_dssp -TTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCC----------C
T ss_pred -CCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCC----HHHHHHHHHhCC----------C
Confidence 2233456789999999999999999999999999999999999999997432 222333322211 1
Q ss_pred cCCCcccHHHHHHHHHHHhhccCCCCCCCCC-----HHHHHH
Q 001253 1045 NLQDEKTVSHMITVLKIAMLCTNISPFDRPT-----MREVVL 1081 (1114)
Q Consensus 1045 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs-----~~evl~ 1081 (1114)
. .+......+.+++.+||+.||++||+ ++|+++
T Consensus 239 ~----~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 239 A----YPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp C----CCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred C----CCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence 1 11122346889999999999999996 455553
No 120
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=8.5e-39 Score=352.05 Aligned_cols=257 Identities=29% Similarity=0.447 Sum_probs=196.8
Q ss_pred hcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCC-hhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGN-NNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.++||+|+||+||+|++. |+.||||++....... ....+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 367999999999999999999986 8999999987654322 23356788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC--------CCCeEEeeccC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD--------KFEAHVGDFGL 958 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~--------~~~~kl~DfG~ 958 (1114)
|||+++++|.++++ ...+++..+..++.|+++||+|||+....+|+||||||+||+++. ++.+||+|||+
T Consensus 85 ~e~~~~~~L~~~~~--~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~ 162 (271)
T 3dtc_A 85 MEFARGGPLNRVLS--GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGL 162 (271)
T ss_dssp EECCTTEEHHHHHT--SSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC
T ss_pred EEcCCCCCHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCc
Confidence 99999999999996 457899999999999999999999982122999999999999986 77899999999
Q ss_pred ceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccc
Q 001253 959 AKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSG 1038 (1114)
Q Consensus 959 a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1114)
++...... .....|++.|+|||.+.+..++.++||||+|+++|||++|+.||..... .......... ...
T Consensus 163 ~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~----~~~~~~~~~~-~~~-- 232 (271)
T 3dtc_A 163 AREWHRTT---KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDG----LAVAYGVAMN-KLA-- 232 (271)
T ss_dssp ----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCH----HHHHHHHHTS-CCC--
T ss_pred cccccccc---ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHhhhcC-CCC--
Confidence 98654222 2345799999999999999999999999999999999999999975332 1111111111 110
Q ss_pred cccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhh
Q 001253 1039 MLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSES 1086 (1114)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i 1086 (1114)
...+......+.+++.+||+.||++|||+.|+++.|+++
T Consensus 233 ---------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 233 ---------LPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp ---------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred ---------CCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 111122234688999999999999999999999999864
No 121
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=1.8e-38 Score=363.74 Aligned_cols=252 Identities=24% Similarity=0.311 Sum_probs=199.5
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.++||+|+||+||+|+.+ +++.||||++...... .+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 94 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAI----DENVQREIINHRSLRHPNIVRFKEVILTPTHLAII 94 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTS----CHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccc----cHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEE
Confidence 468999999999999999999987 7899999999765433 35578999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCC--eEEeeccCceecCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFE--AHVGDFGLAKVIDM 964 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~--~kl~DfG~a~~~~~ 964 (1114)
|||+++|+|.+++.. ...+++..+..++.|+++||+|||+. +|+||||||+||+++.++. +||+|||+++...
T Consensus 95 ~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~- 169 (361)
T 3uc3_A 95 MEYASGGELYERICN-AGRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSV- 169 (361)
T ss_dssp EECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC-----
T ss_pred EEeCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCcccccc-
Confidence 999999999999974 34689999999999999999999998 9999999999999987765 9999999998532
Q ss_pred CCCCccccccccccccCccccccCCCCcc-cchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccc
Q 001253 965 PQSKSMSAIAGSYGYIAPEYAYTMKVTEK-CDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDAR 1043 (1114)
Q Consensus 965 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~-~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
.........||+.|+|||++.+..++.+ +||||+||++|+|++|+.||............++.........
T Consensus 170 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~------- 241 (361)
T 3uc3_A 170 -LHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSI------- 241 (361)
T ss_dssp ------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCC-------
T ss_pred -ccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCC-------
Confidence 2223345579999999999988887665 8999999999999999999987766666666555543321100
Q ss_pred ccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1044 LNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1044 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.........+.+++.+||+.||++|||+.|+++
T Consensus 242 -----~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~ 274 (361)
T 3uc3_A 242 -----PDDIRISPECCHLISRIFVADPATRISIPEIKT 274 (361)
T ss_dssp -----CTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred -----CCcCCCCHHHHHHHHHHccCChhHCcCHHHHHh
Confidence 011112246789999999999999999999976
No 122
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-39 Score=367.37 Aligned_cols=275 Identities=16% Similarity=0.193 Sum_probs=219.8
Q ss_pred hcCCcCCceecccCCeEEEEEEeCC---------CcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceee------
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLRT---------GHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVK------ 872 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~~---------g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------ 872 (1114)
.++|++.+.||+|+||+||+|++.. ++.||||++... +.+.+|+.++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~--------~~~~~E~~~l~~l~h~niv~~~~~~~ 112 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD--------GRLFNEQNFFQRAAKPLQVNKWKKLY 112 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT--------STHHHHHHHHHHHCCHHHHHHHHHHT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc--------chHHHHHHHHHHhcccchhhhhhhhc
Confidence 3689999999999999999999763 789999998754 23778999999999999887
Q ss_pred ---------EEeEEEe-cCceEEEEecCCCCCHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCC
Q 001253 873 ---------LYGFCYH-QGSNLLMYEYMARGSLGELLHGA-SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSN 941 (1114)
Q Consensus 873 ---------l~~~~~~-~~~~~lv~E~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~ 941 (1114)
+++++.. ++..++||||+ +++|.+++... ...+++..+..++.|+++||+|||+. +|+||||||+
T Consensus 113 ~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~ 188 (352)
T 2jii_A 113 STPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAE 188 (352)
T ss_dssp TCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGG
T ss_pred cCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHH
Confidence 6777776 67889999999 89999999854 35799999999999999999999999 9999999999
Q ss_pred CeEECCCC--CeEEeeccCceecCCCCC------CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCC
Q 001253 942 NILLDDKF--EAHVGDFGLAKVIDMPQS------KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPV 1013 (1114)
Q Consensus 942 Nill~~~~--~~kl~DfG~a~~~~~~~~------~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~ 1013 (1114)
||+++.++ .+||+|||+++.+..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||
T Consensus 189 NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf 268 (352)
T 2jii_A 189 NIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPW 268 (352)
T ss_dssp GEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTT
T ss_pred HEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCc
Confidence 99999998 899999999986542211 1223457999999999999999999999999999999999999999
Q ss_pred CCCCCCCC-HHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCC
Q 001253 1014 QPLDQGGD-LVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGH 1092 (1114)
Q Consensus 1014 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~ 1092 (1114)
........ .............. +.+. ..........+.+++.+||+.||++|||++|+++.|+++....+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~ 340 (352)
T 2jii_A 269 TNCLPNTEDIMKQKQKFVDKPGP---FVGP-----CGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLRV 340 (352)
T ss_dssp GGGTTCHHHHHHHHHHHHHSCCC---EECT-----TSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCcCHHHHHHHHHhccCChhh---hhhh-----ccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcCC
Confidence 76542222 22222222221110 0000 000011124688999999999999999999999999999999999
Q ss_pred cccccCCCCC
Q 001253 1093 FEFSPMDHDS 1102 (1114)
Q Consensus 1093 ~~~~~~~~~~ 1102 (1114)
...+++||+.
T Consensus 341 ~~~~~~dw~~ 350 (352)
T 2jii_A 341 SPYDPIGLPM 350 (352)
T ss_dssp CTTSCCCCCC
T ss_pred CcCccccCcC
Confidence 9999999975
No 123
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.6e-38 Score=351.74 Aligned_cols=264 Identities=22% Similarity=0.255 Sum_probs=206.0
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.+.||+|+||+||+|++. +++.||+|++...........+.+.+|+.++++++||||+++++++..++..++||
T Consensus 34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 113 (309)
T 2h34_A 34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDM 113 (309)
T ss_dssp CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEE
Confidence 68999999999999999999976 78999999998766555555678999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+++++|.++++.. ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||++........
T Consensus 114 e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~ 189 (309)
T 2h34_A 114 RLINGVDLAAMLRRQ-GPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATTDEKL 189 (309)
T ss_dssp ECCCCEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC---------
T ss_pred EecCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCcccccccc
Confidence 999999999999743 4689999999999999999999999 999999999999999999999999999987654333
Q ss_pred CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccCC
Q 001253 968 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQ 1047 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1114)
.......|++.|+|||++.+..++.++||||+|+++|||++|+.||.... .......+.......
T Consensus 190 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-----~~~~~~~~~~~~~~~---------- 254 (309)
T 2h34_A 190 TQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ-----LSVMGAHINQAIPRP---------- 254 (309)
T ss_dssp -------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCH-----HHHHHHHHHSCCCCG----------
T ss_pred ccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCch-----HHHHHHHhccCCCCc----------
Confidence 33445679999999999999999999999999999999999999997432 222223222211100
Q ss_pred CcccHHHHHHHHHHHhhccCCCCCCCC-CHHHHHHHHHhhhccCC
Q 001253 1048 DEKTVSHMITVLKIAMLCTNISPFDRP-TMREVVLMLSESNRRQG 1091 (1114)
Q Consensus 1048 ~~~~~~~~~~l~~li~~cl~~dP~~RP-s~~evl~~L~~i~~~~~ 1091 (1114)
..........+.+++.+||+.||++|| +++++++.|+++.....
T Consensus 255 ~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~ 299 (309)
T 2h34_A 255 STVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATAD 299 (309)
T ss_dssp GGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC---
T ss_pred cccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhc
Confidence 001111223588899999999999999 99999999998865543
No 124
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=5.2e-39 Score=367.02 Aligned_cols=255 Identities=22% Similarity=0.302 Sum_probs=205.2
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCC--CChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNRE--GNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 884 (1114)
.++|++.+.||+|+||+||+|+.+ +|+.||||++..... ......+.+.+|+.+++.++||||+++++++.+++..|
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 367999999999999999999976 789999999864321 11123567899999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHhcc---CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCC---eEEeeccC
Q 001253 885 LMYEYMARGSLGELLHG---ASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFE---AHVGDFGL 958 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~---~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~DfG~ 958 (1114)
+||||+++|+|.+.+.. ....+++..+..++.|+++||+|||+. +|+||||||+||+++.++. +||+|||+
T Consensus 103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~ 179 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGV 179 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCTT
T ss_pred EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCcc
Confidence 99999999999888753 234689999999999999999999999 9999999999999987654 99999999
Q ss_pred ceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccc
Q 001253 959 AKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSG 1038 (1114)
Q Consensus 959 a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1114)
++..... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||.... .......... .+
T Consensus 180 a~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~-----~~~~~~i~~~-~~--- 249 (351)
T 3c0i_A 180 AIQLGES-GLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK-----ERLFEGIIKG-KY--- 249 (351)
T ss_dssp CEECCTT-SCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH-----HHHHHHHHHT-CC---
T ss_pred eeEecCC-CeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH-----HHHHHHHHcC-CC---
Confidence 9876532 222345679999999999999999999999999999999999999997522 1222222221 11
Q ss_pred cccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1039 MLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.............+.+++.+||+.||++|||+.|+++
T Consensus 250 ------~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 250 ------KMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp ------CCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ------CCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0000000112346889999999999999999999975
No 125
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=4e-39 Score=369.15 Aligned_cols=253 Identities=23% Similarity=0.254 Sum_probs=198.6
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHH-HhcCCCCceeeEEeEEEecCceEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILT-LGKIRHRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~l 885 (1114)
.++|++.++||+|+||+||+|+.+ +++.||+|++.+...........+..|..+ ++.++||||+++++++.+.+..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 367999999999999999999987 688999999987654433334556667766 577899999999999999999999
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCC
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~ 965 (1114)
||||++||+|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 117 v~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~- 191 (373)
T 2r5t_A 117 VLDYINGGELFYHLQR-ERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIE- 191 (373)
T ss_dssp EEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGGBC-
T ss_pred EEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCcccccccc-
Confidence 9999999999999974 34688999999999999999999999 999999999999999999999999999986432
Q ss_pred CCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc
Q 001253 966 QSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 966 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
........+||+.|+|||++.+..++.++||||+||++|||++|+.||.... .....+...... ..
T Consensus 192 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~----~~~~~~~i~~~~----------~~ 257 (373)
T 2r5t_A 192 HNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN----TAEMYDNILNKP----------LQ 257 (373)
T ss_dssp CCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSB----HHHHHHHHHHSC----------CC
T ss_pred CCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC----HHHHHHHHHhcc----------cC
Confidence 2233456789999999999999999999999999999999999999997533 222233322211 11
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHH
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLML 1083 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L 1083 (1114)
. +......+.+++.+||+.||.+||++.+.++.+
T Consensus 258 ~----~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i 291 (373)
T 2r5t_A 258 L----KPNITNSARHLLEGLLQKDRTKRLGAKDDFMEI 291 (373)
T ss_dssp C----CSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHHH
T ss_pred C----CCCCCHHHHHHHHHHcccCHHhCCCCCCCHHHH
Confidence 1 111234678999999999999999986544444
No 126
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1.1e-38 Score=359.50 Aligned_cols=262 Identities=25% Similarity=0.392 Sum_probs=214.4
Q ss_pred HHhcCCcCCceecccCCeEEEEEEe------CCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVL------RTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH 879 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 879 (1114)
...++|++.+.||+|+||+||+|++ .+++.||||++.... .....+.+.+|+.++++++||||+++++++.+
T Consensus 20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~ 97 (314)
T 2ivs_A 20 FPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENA--SPSELRDLLSEFNVLKQVNHPHVIKLYGACSQ 97 (314)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS
T ss_pred cchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCC--CHHHHHHHHHHHHHHhhCCCCceeeEEEEEec
Confidence 3457899999999999999999986 245789999997543 23445678899999999999999999999999
Q ss_pred cCceEEEEecCCCCCHHHHhccCC-----------------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEec
Q 001253 880 QGSNLLMYEYMARGSLGELLHGAS-----------------------STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHR 936 (1114)
Q Consensus 880 ~~~~~lv~E~~~~gsL~~~l~~~~-----------------------~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~ 936 (1114)
.+..++||||+++|+|.+++.... ..+++.++..++.|+++||+|||+. +|+||
T Consensus 98 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~ 174 (314)
T 2ivs_A 98 DGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHR 174 (314)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred CCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCccc
Confidence 999999999999999999997533 2489999999999999999999999 99999
Q ss_pred CCCCCCeEECCCCCeEEeeccCceecCCCCCC-ccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCC
Q 001253 937 DIKSNNILLDDKFEAHVGDFGLAKVIDMPQSK-SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQ 1014 (1114)
Q Consensus 937 Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~ 1014 (1114)
||||+||++++++.+||+|||+++........ ......+++.|+|||.+.+..++.++||||+|+++|||++ |+.||.
T Consensus 175 dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~ 254 (314)
T 2ivs_A 175 DLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYP 254 (314)
T ss_dssp CCSGGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred ccchheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999876433221 2234467889999999999899999999999999999999 999997
Q ss_pred CCCCCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1015 PLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
..... ..... +..... ...+......+.+++.+||+.||++||++.|+++.|+++..+
T Consensus 255 ~~~~~-~~~~~----~~~~~~------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 255 GIPPE-RLFNL----LKTGHR------------MERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp TCCGG-GHHHH----HHTTCC------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred CCCHH-HHHHH----hhcCCc------------CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence 54432 22221 121110 011112234688999999999999999999999999998654
No 127
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=3.8e-39 Score=358.31 Aligned_cols=262 Identities=24% Similarity=0.400 Sum_probs=217.3
Q ss_pred HHHHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc
Q 001253 804 LVVATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS 882 (1114)
Q Consensus 804 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 882 (1114)
+.+..++|++.+.||+|+||+||+|+++ +++.||+|++..... ..+.+.+|+.++++++||||+++++++.+++.
T Consensus 8 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~----~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 83 (288)
T 3kfa_A 8 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM----EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP 83 (288)
T ss_dssp TBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCST----HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred ccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHH----HHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence 3345688999999999999999999987 588999999975432 35678899999999999999999999999999
Q ss_pred eEEEEecCCCCCHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 883 NLLMYEYMARGSLGELLHGA-SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
.++||||+++++|.+++... ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.+..
T Consensus 84 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~ 160 (288)
T 3kfa_A 84 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRL 160 (288)
T ss_dssp EEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGT
T ss_pred EEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCcccee
Confidence 99999999999999999753 34689999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 962 IDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 962 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
.............+++.|+|||++.+..++.++||||+|+++|+|++ |..||...... .....+ ....
T Consensus 161 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~-~~~~~~----~~~~------ 229 (288)
T 3kfa_A 161 MTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS-QVYELL----EKDY------ 229 (288)
T ss_dssp SCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG-GHHHHH----HTTC------
T ss_pred ccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH-HHHHHH----hccC------
Confidence 65444344445567889999999999999999999999999999999 99998754322 222211 1110
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
. ...+......+.+++.+||+.||++|||++|+++.|+++...
T Consensus 230 --~----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~ 272 (288)
T 3kfa_A 230 --R----MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 272 (288)
T ss_dssp --C----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --C----CCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence 0 111112234688999999999999999999999999988654
No 128
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=9.6e-39 Score=361.50 Aligned_cols=258 Identities=24% Similarity=0.427 Sum_probs=203.7
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcE----EEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHT----VAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS 882 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~----vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 882 (1114)
.++|++.++||+|+||+||+|++. +++. ||+|++..... ....+.+.+|+.++++++||||+++++++.++.
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~- 90 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS--PKANKEILDEAYVMASVDNPHVCRLLGICLTST- 90 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC---------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccC--HHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-
Confidence 367999999999999999999975 4443 57887754332 233567899999999999999999999998754
Q ss_pred eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 883 NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
.++|+||+++|+|.+++......+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 91 ~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~ 167 (327)
T 3poz_A 91 VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167 (327)
T ss_dssp EEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHH
T ss_pred eEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEc
Confidence 7899999999999999987777899999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCCC-ccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 963 DMPQSK-SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 963 ~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
...... ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... ...... +.....
T Consensus 168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-~~~~~~----~~~~~~----- 237 (327)
T 3poz_A 168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-SEISSI----LEKGER----- 237 (327)
T ss_dssp TTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG-GGHHHH----HHTTCC-----
T ss_pred cCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCH-HHHHHH----HHcCCC-----
Confidence 533322 2234457889999999999999999999999999999999 9999975432 222222 211110
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNR 1088 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~ 1088 (1114)
...+......+.+++.+||+.||++||+++|+++.|+++..
T Consensus 238 -------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 238 -------LPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp -------CCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred -------CCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 01112223468899999999999999999999999998754
No 129
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=361.75 Aligned_cols=250 Identities=24% Similarity=0.321 Sum_probs=190.6
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|+++ +++.||||++..... .+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~-----~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 126 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVD-----KKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLV 126 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC---------------CHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchh-----HHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEE
Confidence 478999999999999999999987 688999999975432 35678899999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC---CCCeEEeeccCceecC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD---KFEAHVGDFGLAKVID 963 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~DfG~a~~~~ 963 (1114)
|||+++|+|.+++.. ...+++.++..++.|+++||+|||+. +|+||||||+||+++. ++.+||+|||+++...
T Consensus 127 ~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~ 202 (349)
T 2w4o_A 127 LELVTGGELFDRIVE-KGYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVE 202 (349)
T ss_dssp ECCCCSCBHHHHHTT-CSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC------
T ss_pred EEeCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccC
Confidence 999999999999974 34689999999999999999999999 9999999999999975 8899999999998654
Q ss_pred CCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDAR 1043 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
. ........||+.|+|||++.+..++.++|||||||++|||++|+.||...... ....+..... ..
T Consensus 203 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~---~~~~~~i~~~-~~-------- 268 (349)
T 2w4o_A 203 H--QVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD---QFMFRRILNC-EY-------- 268 (349)
T ss_dssp ------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCH---HHHHHHHHTT-CC--------
T ss_pred c--ccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCccc---HHHHHHHHhC-CC--------
Confidence 2 22334567999999999999999999999999999999999999999754321 1122222221 11
Q ss_pred ccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1044 LNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1044 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.............+.+++.+||+.||++|||+.|+++
T Consensus 269 -~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 269 -YFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp -CCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred -ccCCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0001111122346889999999999999999999876
No 130
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=350.11 Aligned_cols=251 Identities=24% Similarity=0.385 Sum_probs=187.3
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.+.||+|+||+||+|+.. +|+.||||++...........+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (278)
T 3cok_A 11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVL 90 (278)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEE
Confidence 57999999999999999999975 78999999997543322233567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+++++|.+++......+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||.+.......
T Consensus 91 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~- 166 (278)
T 3cok_A 91 EMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPH- 166 (278)
T ss_dssp ECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC----
T ss_pred ecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeeccCCC-
Confidence 99999999999987667899999999999999999999999 99999999999999999999999999998764322
Q ss_pred CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccCC
Q 001253 968 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQ 1047 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1114)
.......|++.|+|||++.+..++.++||||+|+++|||++|+.||......... .. .......
T Consensus 167 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~----~~----------~~~~~~~-- 230 (278)
T 3cok_A 167 EKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTL----NK----------VVLADYE-- 230 (278)
T ss_dssp -------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-------------------CCSSCCC--
T ss_pred CcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHH----HH----------HhhcccC--
Confidence 2223457999999999999989999999999999999999999999754432211 00 0001111
Q ss_pred CcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1048 DEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1048 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.+......+.+++.+||+.||++|||++|+++
T Consensus 231 --~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 231 --MPSFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp --CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred --CccccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 11122346789999999999999999999875
No 131
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=1.2e-38 Score=362.60 Aligned_cols=247 Identities=19% Similarity=0.236 Sum_probs=206.5
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.+.||+|+||+||+|+.+ +|+.||+|++...........+.+.+|+.+++.++||||+++++++.+.+..|+||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 67999999999999999999986 78999999997653322233567888999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+++|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 121 e~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~--- 193 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRI-GRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG--- 193 (350)
T ss_dssp ECCTTCBHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSS---
T ss_pred cCCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccC---
Confidence 999999999999743 4689999999999999999999999 999999999999999999999999999987542
Q ss_pred CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccCC
Q 001253 968 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQ 1047 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1114)
.....+||+.|+|||++.+..++.++||||+||++|||++|+.||.... ........... . ..
T Consensus 194 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~----~~~~~~~i~~~-~---------~~-- 256 (350)
T 1rdq_E 194 -RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ----PIQIYEKIVSG-K---------VR-- 256 (350)
T ss_dssp -CBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHC-C---------CC--
T ss_pred -CcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCC----HHHHHHHHHcC-C---------CC--
Confidence 2345679999999999999999999999999999999999999997432 22222222221 1 11
Q ss_pred CcccHHHHHHHHHHHhhccCCCCCCCCC-----HHHHHH
Q 001253 1048 DEKTVSHMITVLKIAMLCTNISPFDRPT-----MREVVL 1081 (1114)
Q Consensus 1048 ~~~~~~~~~~l~~li~~cl~~dP~~RPs-----~~evl~ 1081 (1114)
.+......+.+++.+||+.||++||+ ++|+++
T Consensus 257 --~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 257 --FPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp --CCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred --CCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 11122346889999999999999998 777764
No 132
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=6.6e-39 Score=362.65 Aligned_cols=268 Identities=23% Similarity=0.372 Sum_probs=198.2
Q ss_pred HHHHHhcCCcCCceecccCCeEEEEEEeCC-C---cEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEE
Q 001253 803 DLVVATDNFDERFVIGRGACGTVYRAVLRT-G---HTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCY 878 (1114)
Q Consensus 803 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-g---~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 878 (1114)
++.+..++|++.+.||+|+||+||+|+++. + ..||||+++...... ...+.+.+|+.++++++||||+++++++.
T Consensus 17 ~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~ 95 (323)
T 3qup_A 17 DVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIAS-SDIEEFLREAACMKEFDHPHVAKLVGVSL 95 (323)
T ss_dssp TTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------C-HHHHHHHHHHHHHTTCCCTTBCCCCEEEE
T ss_pred hcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCH-HHHHHHHHHHHHHHHCCCCceehhhceee
Confidence 334456789999999999999999999763 3 279999997654333 33567889999999999999999999998
Q ss_pred ecCce------EEEEecCCCCCHHHHhccC-----CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC
Q 001253 879 HQGSN------LLMYEYMARGSLGELLHGA-----SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD 947 (1114)
Q Consensus 879 ~~~~~------~lv~E~~~~gsL~~~l~~~-----~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~ 947 (1114)
..... ++||||+++|+|.+++... ...+++..+..++.|+++||+|||+. +|+||||||+||++++
T Consensus 96 ~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~ 172 (323)
T 3qup_A 96 RSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAE 172 (323)
T ss_dssp CC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECT
T ss_pred ccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcC
Confidence 77655 9999999999999998532 22689999999999999999999999 9999999999999999
Q ss_pred CCCeEEeeccCceecCCCCC-CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHH
Q 001253 948 KFEAHVGDFGLAKVIDMPQS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTW 1025 (1114)
Q Consensus 948 ~~~~kl~DfG~a~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~ 1025 (1114)
++.+||+|||+++....... .......+++.|+|||.+.+..++.++||||+||++|||++ |+.||....... ..
T Consensus 173 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~-~~-- 249 (323)
T 3qup_A 173 DMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAE-IY-- 249 (323)
T ss_dssp TSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG-HH--
T ss_pred CCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHH-HH--
Confidence 99999999999986543222 22234457889999999999999999999999999999999 899997544322 11
Q ss_pred HHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCC
Q 001253 1026 VRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQG 1091 (1114)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~ 1091 (1114)
........ ...+......+.+++.+||+.||++|||+.|+++.|+++.....
T Consensus 250 -~~~~~~~~-------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~ 301 (323)
T 3qup_A 250 -NYLIGGNR-------------LKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLS 301 (323)
T ss_dssp -HHHHTTCC-------------CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred -HHHhcCCC-------------CCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhh
Confidence 11111110 01111223468899999999999999999999999999966443
No 133
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=2.5e-38 Score=356.45 Aligned_cols=266 Identities=21% Similarity=0.390 Sum_probs=191.0
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.++||+|+||+||+|+.+ +|+.||+|++...... ...+.+.+|+.++++++||||+++++++.+++..++|
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 81 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEE--GTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLV 81 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTT--CSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeeccccc--ccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEE
Confidence 467999999999999999999976 6899999999765432 2245678899999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccC-----CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 887 YEYMARGSLGELLHGA-----SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~-----~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
|||+++ +|.+++... ...+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 82 ~e~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~ 157 (317)
T 2pmi_A 82 FEFMDN-DLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARA 157 (317)
T ss_dssp EECCCC-BHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEE
T ss_pred EEecCC-CHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCcccee
Confidence 999985 999988632 24689999999999999999999998 999999999999999999999999999987
Q ss_pred cCCCCCCccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCC--cccc
Q 001253 962 IDMPQSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNS--LVSG 1038 (1114)
Q Consensus 962 ~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~ 1038 (1114)
...+. .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||........ ...+.+...... ....
T Consensus 158 ~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~-~~~i~~~~~~~~~~~~~~ 235 (317)
T 2pmi_A 158 FGIPV-NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQ-LKLIFDIMGTPNESLWPS 235 (317)
T ss_dssp TTSCC-CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCSCCTTTCGG
T ss_pred cCCCc-ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH-HHHHHHHhCCCChhHhhh
Confidence 64322 22345578999999999876 4689999999999999999999999975443211 111212111100 0000
Q ss_pred c-----ccccccCCCc----------ccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1039 M-----LDARLNLQDE----------KTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1039 ~-----~~~~~~~~~~----------~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
. .......... ........+.+++.+||+.||++|||++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 236 VTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp GGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 0 0000000000 00112346889999999999999999999874
No 134
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=2.2e-38 Score=348.74 Aligned_cols=253 Identities=20% Similarity=0.317 Sum_probs=208.1
Q ss_pred cCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEec--CceEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQ--GSNLLM 886 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lv 886 (1114)
++|++.+.||+|+||+||+|+++ ++.||||++...... ....+.+.+|+.++++++||||+++++++.+. +..++|
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWS-TRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCC-HHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccC-HHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 67999999999999999999987 889999999765433 34456789999999999999999999999887 778999
Q ss_pred EecCCCCCHHHHhccCCC-CCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 887 YEYMARGSLGELLHGASS-TLDWQTRFMIALGAAEGLSYLHHDCKPR--IFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~-~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
|||+++|+|.++++.... .+++..+..++.|+++||+|||+. + ++||||||+||+++.++.++++|||++....
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~ 164 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ 164 (271)
T ss_dssp EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS
T ss_pred ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceeeec
Confidence 999999999999986544 589999999999999999999998 7 9999999999999999999999999876432
Q ss_pred CCCCCccccccccccccCccccccCCCCc---ccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTMKVTE---KCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~---~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
.....||+.|+|||++.+..++. ++||||+|+++|||++|+.||..... .............
T Consensus 165 ------~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~----~~~~~~~~~~~~~----- 229 (271)
T 3kmu_A 165 ------SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSN----MEIGMKVALEGLR----- 229 (271)
T ss_dssp ------CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCH----HHHHHHHHHSCCC-----
T ss_pred ------ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccCh----HHHHHHHHhcCCC-----
Confidence 12346899999999998765554 79999999999999999999974332 2222222222110
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNR 1088 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~ 1088 (1114)
...+......+.+++.+||+.||++|||++|+++.|+++..
T Consensus 230 -------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 230 -------PTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp -------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred -------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 01111223468899999999999999999999999999864
No 135
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=2.7e-38 Score=359.27 Aligned_cols=265 Identities=24% Similarity=0.394 Sum_probs=213.7
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC--------CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEE
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR--------TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFC 877 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~--------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~ 877 (1114)
..++|++.+.||+|+||+||+|++. +++.||||++.... .....+.+.+|+.+++++ +||||+++++++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 110 (334)
T 2pvf_A 33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDA--TEKDLSDLVSEMEMMKMIGKHKNIINLLGAC 110 (334)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTC--CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCC--cHHHHHHHHHHHHHHHHhhcCCCEeeEEEEE
Confidence 4588999999999999999999863 46789999997543 233456788999999999 899999999999
Q ss_pred EecCceEEEEecCCCCCHHHHhccCC---------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCC
Q 001253 878 YHQGSNLLMYEYMARGSLGELLHGAS---------------STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNN 942 (1114)
Q Consensus 878 ~~~~~~~lv~E~~~~gsL~~~l~~~~---------------~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~N 942 (1114)
.+.+..++||||+++|+|.+++.... ..+++..+..++.|+++||+|||+. +|+||||||+|
T Consensus 111 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~N 187 (334)
T 2pvf_A 111 TQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARN 187 (334)
T ss_dssp CSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGG
T ss_pred ccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccce
Confidence 99999999999999999999997543 2489999999999999999999999 99999999999
Q ss_pred eEECCCCCeEEeeccCceecCCCCC-CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCC
Q 001253 943 ILLDDKFEAHVGDFGLAKVIDMPQS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGG 1020 (1114)
Q Consensus 943 ill~~~~~~kl~DfG~a~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~ 1020 (1114)
|+++.++.+||+|||+++....... .......+++.|+|||++.+..++.++||||+|+++|||++ |+.||....
T Consensus 188 Ill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~--- 264 (334)
T 2pvf_A 188 VLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP--- 264 (334)
T ss_dssp EEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC---
T ss_pred EEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCC---
Confidence 9999999999999999987653322 12233467889999999998889999999999999999999 999996432
Q ss_pred CHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCc
Q 001253 1021 DLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHF 1093 (1114)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~ 1093 (1114)
..+..+. +..... ...+......+.+++.+||+.||.+|||+.|+++.|+++.......
T Consensus 265 -~~~~~~~-~~~~~~------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~~~ 323 (334)
T 2pvf_A 265 -VEELFKL-LKEGHR------------MDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTTNE 323 (334)
T ss_dssp -HHHHHHH-HHHTCC------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC--
T ss_pred -HHHHHHH-HhcCCC------------CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccccC
Confidence 2222222 211110 0111122346889999999999999999999999999997654443
No 136
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.3e-37 Score=352.41 Aligned_cols=272 Identities=25% Similarity=0.336 Sum_probs=211.0
Q ss_pred HHHHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhc--CCCCceeeEEeEEEec-
Q 001253 804 LVVATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGK--IRHRNIVKLYGFCYHQ- 880 (1114)
Q Consensus 804 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~- 880 (1114)
.....++|++.++||+|+||+||+|+++ ++.||||++.... ...+..|.+++.. ++||||+++++++...
T Consensus 32 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~------~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~ 104 (337)
T 3mdy_A 32 QRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE------EASWFRETEIYQTVLMRHENILGFIAADIKGT 104 (337)
T ss_dssp HTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESC
T ss_pred ccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc------cchhhhHHHHHHHHhhcCCCeeeEEEEEccCC
Confidence 3345578999999999999999999987 8999999986432 2334445555554 4899999999999887
Q ss_pred ---CceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC-----CCCeEecCCCCCCeEECCCCCeE
Q 001253 881 ---GSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDC-----KPRIFHRDIKSNNILLDDKFEAH 952 (1114)
Q Consensus 881 ---~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~-----~~~ivH~Dlk~~Nill~~~~~~k 952 (1114)
...++||||+++|+|.++++. ..+++..+..++.|++.||+|||+.+ .++|+||||||+||+++.++.+|
T Consensus 105 ~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~k 182 (337)
T 3mdy_A 105 GSWTQLYLITDYHENGSLYDYLKS--TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCC 182 (337)
T ss_dssp GGGCEEEEEECCCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEE
T ss_pred CCCCceEEEEeccCCCcHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEE
Confidence 678999999999999999974 36899999999999999999999752 34899999999999999999999
Q ss_pred EeeccCceecCCCCCC---ccccccccccccCccccccCCCCcc------cchHHHHHHHHHHHhC----------CCCC
Q 001253 953 VGDFGLAKVIDMPQSK---SMSAIAGSYGYIAPEYAYTMKVTEK------CDIYSYGVVLLELLTG----------RAPV 1013 (1114)
Q Consensus 953 l~DfG~a~~~~~~~~~---~~~~~~g~~~y~aPE~~~~~~~~~~------~DvwslGvil~el~tg----------~~p~ 1013 (1114)
|+|||+++........ ......||+.|+|||++.+..++.+ +|||||||++|||++| +.||
T Consensus 183 l~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~ 262 (337)
T 3mdy_A 183 IADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPY 262 (337)
T ss_dssp ECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTT
T ss_pred EEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccH
Confidence 9999999865432221 1234579999999999987766665 9999999999999999 7777
Q ss_pred CCCCCCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1014 QPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
......................... .. ...........+.+++.+||+.||++|||+.|+++.|+++....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~ 333 (337)
T 3mdy_A 263 HDLVPSDPSYEDMREIVCIKKLRPS-----FP-NRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ 333 (337)
T ss_dssp TTTSCSSCCHHHHHHHHTTSCCCCC-----CC-GGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred hhhcCCCCchhhhHHHHhhhccCcc-----cc-ccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence 6655444444444443332221111 00 01112356678999999999999999999999999999987654
No 137
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=5e-38 Score=353.14 Aligned_cols=264 Identities=23% Similarity=0.347 Sum_probs=204.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce---
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN--- 883 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 883 (1114)
.++|++.+.||+|+||+||+|++. +++.||||++.............+.+|+.++++++||||+++++++......
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 368999999999999999999974 7899999999877666666667889999999999999999999998876544
Q ss_pred -EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 884 -LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 884 -~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
|+||||+++++|.++++.. ..+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~ 166 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTE-GPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAI 166 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC---
T ss_pred cEEEEecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCcccc
Confidence 9999999999999999743 4689999999999999999999999 9999999999999999999999999999866
Q ss_pred CCCCC--CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 963 DMPQS--KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 963 ~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
..... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||.... .................
T Consensus 167 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~----~~~~~~~~~~~~~~~~~-- 240 (311)
T 3ork_A 167 ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS----PVSVAYQHVREDPIPPS-- 240 (311)
T ss_dssp ---------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS----HHHHHHHHHHCCCCCHH--
T ss_pred cccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC----hHHHHHHHhcCCCCCcc--
Confidence 43222 22334579999999999999999999999999999999999999996433 22222222222111100
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHH-HHHHHHHhhhcc
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMR-EVVLMLSESNRR 1089 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~-evl~~L~~i~~~ 1089 (1114)
.........+.+++.+||+.||++||++. ++.+.+.++...
T Consensus 241 --------~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~ 282 (311)
T 3ork_A 241 --------ARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNG 282 (311)
T ss_dssp --------HHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHTT
T ss_pred --------cccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhcC
Confidence 00111234688999999999999999554 556677666443
No 138
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=7.8e-38 Score=351.64 Aligned_cols=264 Identities=22% Similarity=0.316 Sum_probs=205.4
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|+.. +|+.||||++...........+.+.+|+.++++++||||+++++++..++..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 367999999999999999999975 7899999999875555555667889999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhcc---CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 887 YEYMARGSLGELLHG---ASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~---~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
|||+++++|.+++.. ....+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||+++...
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~ 187 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence 999999999999863 355789999999999999999999999 99999999999999999999999999998654
Q ss_pred CCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDAR 1043 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
... .......|++.|+|||++.+..++.++||||||+++|||++|+.||..... ......+. +.......
T Consensus 188 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~--~~~~~~~~-~~~~~~~~------ 257 (310)
T 2wqm_A 188 SKT-TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM--NLYSLCKK-IEQCDYPP------ 257 (310)
T ss_dssp ------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---C--CHHHHHHH-HHTTCSCC------
T ss_pred CCC-ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccch--hHHHHHHH-hhcccCCC------
Confidence 222 223345789999999999999999999999999999999999999974332 22222222 22111100
Q ss_pred ccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1044 LNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1044 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
.........+.+++.+||+.||++|||++|+++.|++++..
T Consensus 258 -----~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~ 298 (310)
T 2wqm_A 258 -----LPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHAC 298 (310)
T ss_dssp -----CCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -----CcccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHh
Confidence 00111234688999999999999999999999999998664
No 139
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=5e-38 Score=370.96 Aligned_cols=280 Identities=20% Similarity=0.247 Sum_probs=224.6
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCC-CceeeEEeEEEecCceEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRH-RNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~~l 885 (1114)
.++|++.++||+|+||+||+|++. +++.||||++...... ..+..|+++++.++| +++..+..++...+..++
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~-----~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~l 80 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH-----PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVL 80 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS-----CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEE
Confidence 468999999999999999999974 7899999998755442 236789999999987 566666667777888899
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEE---CCCCCeEEeeccCceec
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILL---DDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~DfG~a~~~ 962 (1114)
||||+ +++|.+++......+++..+..++.||+.||+|||+. +|+||||||+|||+ +.++.+||+|||+++.+
T Consensus 81 vme~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~ 156 (483)
T 3sv0_A 81 VMDLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKY 156 (483)
T ss_dssp EEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEEC
T ss_pred EEECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceec
Confidence 99999 8899999987677899999999999999999999999 99999999999999 58899999999999876
Q ss_pred CCCCCC------ccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcc
Q 001253 963 DMPQSK------SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLV 1036 (1114)
Q Consensus 963 ~~~~~~------~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1114)
...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......... ..+...... ...
T Consensus 157 ~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~-~~~~~i~~~-~~~ 234 (483)
T 3sv0_A 157 RDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKK-QKYEKISEK-KVA 234 (483)
T ss_dssp BCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHH-HHHHHHHHH-HHH
T ss_pred cCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHH-HHHHHHhhc-ccc
Confidence 543321 223567999999999999999999999999999999999999999865543322 222211111 000
Q ss_pred cccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCcccccCCCCCcccc
Q 001253 1037 SGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFEFSPMDHDSDQKL 1106 (1114)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~~~~~~~~~~~~~ 1106 (1114)
..+ . ........++.+++.+||+.||++||++.+|++.|+++..+.+..++..+||+.....
T Consensus 235 ~~~-~-------~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~~~~~~~~~dW~~~~~~ 296 (483)
T 3sv0_A 235 TSI-E-------ALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVFDWTILKYQ 296 (483)
T ss_dssp SCH-H-------HHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCCCSSCCHHHHHTC-
T ss_pred ccH-H-------HHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHcCCCccCCcCchhhccc
Confidence 000 0 0001112468899999999999999999999999999999999999999998755443
No 140
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=3.7e-38 Score=375.62 Aligned_cols=255 Identities=25% Similarity=0.310 Sum_probs=210.5
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.++||+|+||+||+|+.+ +|+.||+|++.............+.+|+.+++.++||||+++++++.+.+..|+|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 467999999999999999999986 7999999999764322222356678899999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCC
Q 001253 887 YEYMARGSLGELLHGAS-STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~ 965 (1114)
|||++||+|.+++.... ..+++..+..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+++....
T Consensus 263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~- 338 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPE- 338 (576)
T ss_dssp ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT-
T ss_pred EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceeccc-
Confidence 99999999999997543 3599999999999999999999999 999999999999999999999999999987642
Q ss_pred CCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc
Q 001253 966 QSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 966 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
.......+||+.|+|||++.+..++.++||||+||++|||++|+.||.............+..... .
T Consensus 339 -~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~-~----------- 405 (576)
T 2acx_A 339 -GQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEV-P----------- 405 (576)
T ss_dssp -TCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHC-C-----------
T ss_pred -CccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcc-c-----------
Confidence 223345689999999999999999999999999999999999999998655433333332222211 1
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRP-----TMREVVL 1081 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1081 (1114)
...+......+.+++.+||+.||++|| +++|+++
T Consensus 406 --~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 406 --EEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp --CCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred --ccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 011112234688999999999999999 7788864
No 141
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=4.8e-38 Score=351.98 Aligned_cols=263 Identities=25% Similarity=0.378 Sum_probs=209.0
Q ss_pred hcCCcCCceecccCCeEEEEEEe-----CCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEec--
Q 001253 808 TDNFDERFVIGRGACGTVYRAVL-----RTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQ-- 880 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~-----~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-- 880 (1114)
.++|++.++||+|+||+||+|++ .+++.||+|++...... ...+.+.+|+.+++.++||||+++++++.+.
T Consensus 20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 97 (302)
T 4e5w_A 20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGG--NHIADLKKEIEILRNLYHENIVKYKGICTEDGG 97 (302)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-------CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---
T ss_pred hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccc--hhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCC
Confidence 36689999999999999999994 36899999999765432 2356789999999999999999999999876
Q ss_pred CceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 881 GSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 881 ~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
...++||||+++|+|.+++......+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 98 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~ 174 (302)
T 4e5w_A 98 NGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTK 174 (302)
T ss_dssp CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred ceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECcccccc
Confidence 568999999999999999976667899999999999999999999999 99999999999999999999999999998
Q ss_pred ecCCCCC--CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCC----------CCCCHHHHHHH
Q 001253 961 VIDMPQS--KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLD----------QGGDLVTWVRN 1028 (1114)
Q Consensus 961 ~~~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~----------~~~~~~~~~~~ 1028 (1114)
....... .......||..|+|||++.+..++.++||||+|+++|||++|+.|+.... ........+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (302)
T 4e5w_A 175 AIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVN 254 (302)
T ss_dssp ECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHH
T ss_pred cccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHH
Confidence 7653332 22334568889999999999999999999999999999999998864211 00111111111
Q ss_pred HHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhh
Q 001253 1029 FIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESN 1087 (1114)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~ 1087 (1114)
...... ....+......+.+++.+||+.||.+|||+.|+++.|+++.
T Consensus 255 ~~~~~~------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 255 TLKEGK------------RLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHHTTC------------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHhccC------------CCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 111111 01112223356889999999999999999999999999874
No 142
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7e-38 Score=347.77 Aligned_cols=259 Identities=24% Similarity=0.345 Sum_probs=211.5
Q ss_pred hcCCcCCc-eecccCCeEEEEEEeC---CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce
Q 001253 808 TDNFDERF-VIGRGACGTVYRAVLR---TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN 883 (1114)
Q Consensus 808 ~~~~~~~~-~lG~G~~g~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 883 (1114)
.++|.+.+ .||+|+||+||+|+++ ++..||||+++... .....+.+.+|+.+++.++||||+++++++ ..+..
T Consensus 8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~ 84 (287)
T 1u59_A 8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT--EKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEAL 84 (287)
T ss_dssp GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSE
T ss_pred HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCcc--chhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCc
Confidence 35676666 8999999999999864 57889999997653 234466788999999999999999999999 55678
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
++||||+++++|.+++......+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 85 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~ 161 (287)
T 1u59_A 85 MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALG 161 (287)
T ss_dssp EEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECT
T ss_pred EEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeec
Confidence 999999999999999987677899999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCC--ccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 964 MPQSK--SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 964 ~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
..... ......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||..... .+.. ..+.....
T Consensus 162 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~----~~~~-~~i~~~~~----- 231 (287)
T 1u59_A 162 ADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG----PEVM-AFIEQGKR----- 231 (287)
T ss_dssp TCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT----HHHH-HHHHTTCC-----
T ss_pred cCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH----HHHH-HHHhcCCc-----
Confidence 33221 1233457899999999998889999999999999999998 9999975432 1111 12222110
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
...+......+.+++.+||+.||++||++.|+++.|+++...
T Consensus 232 -------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 273 (287)
T 1u59_A 232 -------MECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS 273 (287)
T ss_dssp -------CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -------CCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 111122334688999999999999999999999999998443
No 143
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=3.2e-38 Score=371.95 Aligned_cols=249 Identities=27% Similarity=0.397 Sum_probs=207.8
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|.+.+.||+|+||+||+|+++ +|+.||||++...........+.+.+|+.+++.++||||+++++++...+..|+||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 67999999999999999999986 79999999997653322233567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+++|+|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.... .
T Consensus 96 E~~~gg~L~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~--~ 169 (476)
T 2y94_A 96 EYVSGGELFDYICK-NGRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSD--G 169 (476)
T ss_dssp ECCSSEEHHHHTTS-SSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCT--T
T ss_pred eCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhccc--c
Confidence 99999999999974 45799999999999999999999998 999999999999999999999999999987643 2
Q ss_pred CccccccccccccCccccccCCC-CcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 968 KSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~~~-~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
......+||+.|+|||++.+..+ +.++||||+||++|||++|+.||..... ....+.... +.+ .
T Consensus 170 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~----~~~~~~i~~-~~~---------~- 234 (476)
T 2y94_A 170 EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV----PTLFKKICD-GIF---------Y- 234 (476)
T ss_dssp CCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS----HHHHHHHHT-TCC---------C-
T ss_pred ccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH----HHHHHHHhc-CCc---------C-
Confidence 33445689999999999988775 6899999999999999999999974332 222222221 111 1
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.+......+.+++.+||+.||++|||++|+++
T Consensus 235 ---~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 235 ---TPQYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp ---CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ---CCccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 01112246789999999999999999999986
No 144
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=1.7e-38 Score=358.20 Aligned_cols=272 Identities=25% Similarity=0.386 Sum_probs=218.6
Q ss_pred CCHHHHHHHhcCCcCCceecccCCeEEEEEEe------CCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCcee
Q 001253 799 FTFKDLVVATDNFDERFVIGRGACGTVYRAVL------RTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIV 871 (1114)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~------~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv 871 (1114)
+....+....++|++.+.||+|+||+||+|++ .+++.||||++..... ....+.+.+|+.+++++ +||||+
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~~hp~iv 94 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGAT--HSEHRALMSELKILIHIGHHLNVV 94 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCC--HHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCC--cHHHHHHHHHHHHHHhcccCCCee
Confidence 34455666778999999999999999999984 2568999999975432 33456788999999999 799999
Q ss_pred eEEeEEEecC-ceEEEEecCCCCCHHHHhccCCC---------------CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEe
Q 001253 872 KLYGFCYHQG-SNLLMYEYMARGSLGELLHGASS---------------TLDWQTRFMIALGAAEGLSYLHHDCKPRIFH 935 (1114)
Q Consensus 872 ~l~~~~~~~~-~~~lv~E~~~~gsL~~~l~~~~~---------------~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH 935 (1114)
++++++...+ ..++||||+++|+|.+++..... .+++..+..++.|+++||+|||+. +|+|
T Consensus 95 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H 171 (316)
T 2xir_A 95 NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIH 171 (316)
T ss_dssp CEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCC
T ss_pred eEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---Cccc
Confidence 9999998755 58999999999999999985443 289999999999999999999999 9999
Q ss_pred cCCCCCCeEECCCCCeEEeeccCceecCCCCC-CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCC
Q 001253 936 RDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPV 1013 (1114)
Q Consensus 936 ~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~ 1013 (1114)
|||||+||+++.++.+||+|||+++....... .......||+.|+|||++.+..++.++||||+|+++|||++ |+.||
T Consensus 172 ~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~ 251 (316)
T 2xir_A 172 RDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY 251 (316)
T ss_dssp SCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred ccCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999987643322 22334568899999999999999999999999999999998 99999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCC
Q 001253 1014 QPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQG 1091 (1114)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~ 1091 (1114)
............+.. ... . ..+......+.+++.+||+.||.+|||+.|+++.|+++.....
T Consensus 252 ~~~~~~~~~~~~~~~----~~~--------~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 313 (316)
T 2xir_A 252 PGVKIDEEFCRRLKE----GTR--------M----RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 313 (316)
T ss_dssp TTCCCSHHHHHHHHH----TCC--------C----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHhcc----Ccc--------C----CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 765433222222211 110 0 0111123468899999999999999999999999999876543
No 145
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=8.8e-38 Score=349.14 Aligned_cols=264 Identities=25% Similarity=0.320 Sum_probs=211.7
Q ss_pred CCcCCceecccCCeEEEEEEeC-C---CcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce-E
Q 001253 810 NFDERFVIGRGACGTVYRAVLR-T---GHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN-L 884 (1114)
Q Consensus 810 ~~~~~~~lG~G~~g~Vy~~~~~-~---g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-~ 884 (1114)
.|+..++||+|+||+||+|++. + +..||+|++.... .....+.+.+|+.++++++||||+++++++.+.+.. +
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 99 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRIT--EMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPH 99 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCC--SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccc--cHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcE
Confidence 4666789999999999999864 2 2379999987533 233456788999999999999999999999876655 9
Q ss_pred EEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCC
Q 001253 885 LMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDM 964 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~ 964 (1114)
+||||+.+|+|.+++......+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||+++....
T Consensus 100 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 176 (298)
T 3pls_A 100 VLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDILD 176 (298)
T ss_dssp EEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTT
T ss_pred EEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccccC
Confidence 99999999999999987777899999999999999999999999 999999999999999999999999999986532
Q ss_pred CC---CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccc
Q 001253 965 PQ---SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLD 1041 (1114)
Q Consensus 965 ~~---~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1114)
.. ........+++.|+|||.+.+..++.++||||+|+++|||++|..|+............+.. ...
T Consensus 177 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~----~~~------ 246 (298)
T 3pls_A 177 REYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQ----GRR------ 246 (298)
T ss_dssp GGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHT----TCC------
T ss_pred CcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhc----CCC------
Confidence 21 12233456889999999999999999999999999999999976665443333333322221 110
Q ss_pred ccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCcc
Q 001253 1042 ARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFE 1094 (1114)
Q Consensus 1042 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~ 1094 (1114)
...+......+.+++.+||+.||.+|||++|+++.|+++..+.....
T Consensus 247 ------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~~ 293 (298)
T 3pls_A 247 ------LPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGDH 293 (298)
T ss_dssp ------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSCC
T ss_pred ------CCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhccc
Confidence 01111123468899999999999999999999999999977655443
No 146
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.1e-37 Score=343.90 Aligned_cols=248 Identities=23% Similarity=0.355 Sum_probs=183.0
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.+.||+|+||+||+|++. +|+.||+|++...........+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 57999999999999999999965 78999999998765555555678899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+ ++++.+++.. ...+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++..... .
T Consensus 93 e~~-~~~l~~~~~~-~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~--~ 165 (275)
T 2eue_A 93 EYA-GNELFDYIVQ-RDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD--G 165 (275)
T ss_dssp ECC-CEEHHHHHHT-SSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCSSCC--------
T ss_pred hhc-CCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEEeecccceeccC--c
Confidence 999 5688888764 35699999999999999999999999 999999999999999999999999999986542 2
Q ss_pred CccccccccccccCccccccCCC-CcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 968 KSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~~~-~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
.......||+.|+|||++.+..+ +.++||||+|+++|||++|+.||.... .....+...... . .
T Consensus 166 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~~~~~-~---------~- 230 (275)
T 2eue_A 166 NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES----IPVLFKNISNGV-Y---------T- 230 (275)
T ss_dssp ---------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHTC-C---------C-
T ss_pred ccccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHhCC-C---------C-
Confidence 22344579999999999987765 689999999999999999999996432 222222222211 0 0
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.+......+.+++.+||+.||.+|||++|+++
T Consensus 231 ---~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 231 ---LPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp ---CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred ---CCccCCHHHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 11112345789999999999999999999875
No 147
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=364.01 Aligned_cols=253 Identities=23% Similarity=0.282 Sum_probs=202.2
Q ss_pred cCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEEecC
Q 001253 812 DERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMYEYM 890 (1114)
Q Consensus 812 ~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~E~~ 890 (1114)
...+.||+|+||+||+|+.. +|+.||+|++..... ...+.+.+|+.++++++||||+++++++.+.+..++||||+
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~ 168 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGM---KDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYV 168 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSH---HHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEccccc---ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCC
Confidence 33568999999999999975 789999999976432 33567899999999999999999999999999999999999
Q ss_pred CCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEE--CCCCCeEEeeccCceecCCCCCC
Q 001253 891 ARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILL--DDKFEAHVGDFGLAKVIDMPQSK 968 (1114)
Q Consensus 891 ~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill--~~~~~~kl~DfG~a~~~~~~~~~ 968 (1114)
++|+|.+++......+++..+..++.|+++||+|||+. +|+||||||+||++ +.++.+||+|||+++..... .
T Consensus 169 ~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~--~ 243 (373)
T 2x4f_A 169 DGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPR--E 243 (373)
T ss_dssp TTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTT--C
T ss_pred CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCc--c
Confidence 99999999976666799999999999999999999999 99999999999999 67789999999999976432 2
Q ss_pred ccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccCCC
Q 001253 969 SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQD 1048 (1114)
Q Consensus 969 ~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1114)
......||+.|+|||++.+..++.++|||||||++|||++|+.||.... ....+......... ...
T Consensus 244 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~----~~~~~~~i~~~~~~----------~~~ 309 (373)
T 2x4f_A 244 KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDN----DAETLNNILACRWD----------LED 309 (373)
T ss_dssp BCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHHTCCC----------SCS
T ss_pred ccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHhccCC----------CCh
Confidence 3344579999999999999899999999999999999999999997543 22333333322110 011
Q ss_pred cccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHhh
Q 001253 1049 EKTVSHMITVLKIAMLCTNISPFDRPTMREVVL--MLSES 1086 (1114)
Q Consensus 1049 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~i 1086 (1114)
.........+.+++.+||+.||.+|||+.|+++ .+++.
T Consensus 310 ~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~ 349 (373)
T 2x4f_A 310 EEFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSDH 349 (373)
T ss_dssp GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCH
T ss_pred hhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCC
Confidence 111122346889999999999999999999987 55443
No 148
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=347.82 Aligned_cols=252 Identities=21% Similarity=0.311 Sum_probs=197.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCC-----------------------hhhHHHHHHHHHHHh
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGN-----------------------NNVDNSFRAEILTLG 863 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~-----------------------~~~~~~~~~E~~~l~ 863 (1114)
.++|++.+.||+|+||+||+|+.+ +++.||||++....... ....+.+.+|+.+++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 368999999999999999999975 68999999997653211 112346889999999
Q ss_pred cCCCCceeeEEeEEEe--cCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCC
Q 001253 864 KIRHRNIVKLYGFCYH--QGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSN 941 (1114)
Q Consensus 864 ~l~h~niv~l~~~~~~--~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~ 941 (1114)
+++||||+++++++.+ .+..++||||+++++|.+++. ...+++..+..++.|+++||+|||+. +|+||||||+
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~ 166 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT--LKPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKPS 166 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC--SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGG
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHH
Confidence 9999999999999987 567899999999999998765 35799999999999999999999999 9999999999
Q ss_pred CeEECCCCCeEEeeccCceecCCCCCCccccccccccccCccccccCC---CCcccchHHHHHHHHHHHhCCCCCCCCCC
Q 001253 942 NILLDDKFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMK---VTEKCDIYSYGVVLLELLTGRAPVQPLDQ 1018 (1114)
Q Consensus 942 Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~---~~~~~DvwslGvil~el~tg~~p~~~~~~ 1018 (1114)
||+++.++.+||+|||+++...... .......||+.|+|||++.+.. ++.++||||+||++|||++|+.||....
T Consensus 167 Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~- 244 (298)
T 2zv2_A 167 NLLVGEDGHIKIADFGVSNEFKGSD-ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER- 244 (298)
T ss_dssp GEEECTTSCEEECCCTTCEECSSSS-CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS-
T ss_pred HEEECCCCCEEEecCCCcccccccc-ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc-
Confidence 9999999999999999998764322 2234567999999999997665 4778999999999999999999996432
Q ss_pred CCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1019 GGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
........... ... . .........+.+++.+||+.||++|||+.|+++
T Consensus 245 ---~~~~~~~~~~~-~~~-------~----~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 245 ---IMCLHSKIKSQ-ALE-------F----PDQPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp ---HHHHHHHHHHC-CCC-------C----CSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ---HHHHHHHHhcc-cCC-------C----CCccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 22222221111 110 0 001112246889999999999999999999864
No 149
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=6.3e-38 Score=356.19 Aligned_cols=249 Identities=22% Similarity=0.350 Sum_probs=199.4
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC------
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG------ 881 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 881 (1114)
++|++.+.||+|+||+||+|+++ +|+.||||++..... ....+.+.+|+.++++++||||+++++++.+..
T Consensus 6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~--~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 83 (332)
T 3qd2_B 6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNR--ELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE 83 (332)
T ss_dssp HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCST--TTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCc--hhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence 67999999999999999999987 799999999975443 234577899999999999999999999986543
Q ss_pred ---------------------------------------------------ceEEEEecCCCCCHHHHhccCCC--CCCH
Q 001253 882 ---------------------------------------------------SNLLMYEYMARGSLGELLHGASS--TLDW 908 (1114)
Q Consensus 882 ---------------------------------------------------~~~lv~E~~~~gsL~~~l~~~~~--~l~~ 908 (1114)
..++||||+++|+|.++++.... ..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~ 163 (332)
T 3qd2_B 84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREH 163 (332)
T ss_dssp HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCH
T ss_pred hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhh
Confidence 27899999999999999985432 4567
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC-----------Cccccccccc
Q 001253 909 QTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS-----------KSMSAIAGSY 977 (1114)
Q Consensus 909 ~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~-----------~~~~~~~g~~ 977 (1114)
..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....... .......||+
T Consensus 164 ~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 240 (332)
T 3qd2_B 164 GVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK 240 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CG
T ss_pred HHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCc
Confidence 78899999999999999999 999999999999999999999999999987654321 2234457999
Q ss_pred cccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHH
Q 001253 978 GYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMIT 1057 (1114)
Q Consensus 978 ~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1114)
.|+|||++.+..++.++||||+||++|||++|..|+.. ....... ..... ...........
T Consensus 241 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~------~~~~~~~-~~~~~------------~~~~~~~~~~~ 301 (332)
T 3qd2_B 241 LYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQME------RVRIITD-VRNLK------------FPLLFTQKYPQ 301 (332)
T ss_dssp GGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHH------HHHHHHH-HHTTC------------CCHHHHHHCHH
T ss_pred CccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhH------HHHHHHH-hhccC------------CCcccccCChh
Confidence 99999999999999999999999999999998766421 1111111 11110 01122334456
Q ss_pred HHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1058 VLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1058 l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
+.+++.+||+.||++|||++|+++
T Consensus 302 ~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 302 EHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp HHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHccCCCCcCCCHHHHhh
Confidence 789999999999999999999985
No 150
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-38 Score=352.31 Aligned_cols=255 Identities=31% Similarity=0.485 Sum_probs=200.6
Q ss_pred cCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEEe
Q 001253 809 DNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMYE 888 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~E 888 (1114)
++|++.+.||+|+||+||+|+++ ++.||||++... ...+.+.+|+.++++++||||+++++++. +..++|||
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~-----~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e 79 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE-----SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVME 79 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST-----THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEE
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh-----hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEE
Confidence 67899999999999999999986 789999998643 23567899999999999999999999876 45899999
Q ss_pred cCCCCCHHHHhccCCC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCC-eEEeeccCceecCCC
Q 001253 889 YMARGSLGELLHGASS--TLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFE-AHVGDFGLAKVIDMP 965 (1114)
Q Consensus 889 ~~~~gsL~~~l~~~~~--~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~-~kl~DfG~a~~~~~~ 965 (1114)
|+++|+|.++++.... .+++..+..++.|+++||+|||+....+|+||||||+||+++.++. +||+|||+++.....
T Consensus 80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~ 159 (307)
T 2eva_A 80 YAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH 159 (307)
T ss_dssp CCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-------
T ss_pred cCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc
Confidence 9999999999985443 5789999999999999999999932238999999999999998886 799999999865322
Q ss_pred CCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc
Q 001253 966 QSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 966 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
.....||+.|+|||++.+..++.++||||||+++|||++|+.||..... ......... .....
T Consensus 160 ----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~--~~~~~~~~~-~~~~~---------- 222 (307)
T 2eva_A 160 ----MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGG--PAFRIMWAV-HNGTR---------- 222 (307)
T ss_dssp ---------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCS--SHHHHHHHH-HTTCC----------
T ss_pred ----cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCc--cHHHHHHHH-hcCCC----------
Confidence 2334699999999999999999999999999999999999999975432 222221111 11110
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
..........+.+++.+||+.||++|||++|+++.|+++....
T Consensus 223 --~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 265 (307)
T 2eva_A 223 --PPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF 265 (307)
T ss_dssp --CCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred --CCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhc
Confidence 0111112346789999999999999999999999999986654
No 151
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=9.6e-38 Score=362.56 Aligned_cols=276 Identities=18% Similarity=0.220 Sum_probs=210.1
Q ss_pred hcCCcCCceeccc--CCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceE
Q 001253 808 TDNFDERFVIGRG--ACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 808 ~~~~~~~~~lG~G--~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 884 (1114)
.++|++.++||+| +||+||+|+++ +|+.||||++...... ....+.+.+|+.+++.++|||||++++++.+++..|
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 102 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACS-NEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW 102 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccC-hHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence 4789999999999 99999999987 7999999999765443 344667889999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 885 LMYEYMARGSLGELLHGA-SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
+||||+++|+|.+++... ...+++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|||.+....
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 103 VVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMI 179 (389)
T ss_dssp EEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred EEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence 999999999999999754 35799999999999999999999999 99999999999999999999999999986542
Q ss_pred CCC------CCccccccccccccCcccccc--CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcC--
Q 001253 964 MPQ------SKSMSAIAGSYGYIAPEYAYT--MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNN-- 1033 (1114)
Q Consensus 964 ~~~------~~~~~~~~g~~~y~aPE~~~~--~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-- 1033 (1114)
... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||............+.......
T Consensus 180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 259 (389)
T 3gni_B 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLD 259 (389)
T ss_dssp ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC----------
T ss_pred cccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCcccc
Confidence 111 112233478999999999987 6799999999999999999999999976554433322221111000
Q ss_pred --------------------Cccccccc--c----cccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH--HHh
Q 001253 1034 --------------------SLVSGMLD--A----RLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLM--LSE 1085 (1114)
Q Consensus 1034 --------------------~~~~~~~~--~----~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~--L~~ 1085 (1114)
...+.... . ...............+.+++.+||+.||++|||++|+++- +++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~hp~f~~ 339 (389)
T 3gni_B 260 TSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQ 339 (389)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGGG
T ss_pred ccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcCHHHHH
Confidence 00000000 0 0000001112233568899999999999999999999853 444
Q ss_pred hh
Q 001253 1086 SN 1087 (1114)
Q Consensus 1086 i~ 1087 (1114)
+.
T Consensus 340 ~~ 341 (389)
T 3gni_B 340 IK 341 (389)
T ss_dssp C-
T ss_pred Hh
Confidence 43
No 152
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=3.9e-38 Score=348.66 Aligned_cols=260 Identities=25% Similarity=0.387 Sum_probs=208.4
Q ss_pred HhcCCcCCceecccCCeEEEEEEeCC----CcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLRT----GHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS 882 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~~----g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 882 (1114)
..++|++.+.||+|+||+||+|++.. +..||+|++.... .....+.+.+|+.+++.++||||+++++++.+ +.
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~ 86 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDC--TLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EP 86 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTS--CHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SS
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEeccccc--CchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CC
Confidence 34789999999999999999998642 3469999987653 23346778999999999999999999999865 45
Q ss_pred eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 883 NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
.++||||+++++|.+++......+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||++...
T Consensus 87 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 163 (281)
T 3cc6_A 87 TWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYI 163 (281)
T ss_dssp CEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGCC
T ss_pred CEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCccc
Confidence 7899999999999999987667799999999999999999999998 9999999999999999999999999999876
Q ss_pred CCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCccccccc
Q 001253 963 DMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLD 1041 (1114)
Q Consensus 963 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1114)
............+++.|+|||++.+..++.++||||+|+++|||++ |+.||...... .....+.. . ..
T Consensus 164 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~-~~~~~~~~---~-~~------ 232 (281)
T 3cc6_A 164 EDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENK-DVIGVLEK---G-DR------ 232 (281)
T ss_dssp ---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGG-GHHHHHHH---T-CC------
T ss_pred ccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChH-HHHHHHhc---C-CC------
Confidence 5433333344567889999999998999999999999999999998 99999754332 22222111 1 00
Q ss_pred ccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1042 ARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1042 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
. ..+......+.+++.+||+.||++|||+.|+++.|+++...
T Consensus 233 --~----~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~ 274 (281)
T 3cc6_A 233 --L----PKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQM 274 (281)
T ss_dssp --C----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --C----CCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHh
Confidence 0 01111234688999999999999999999999999998553
No 153
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=2.8e-38 Score=359.85 Aligned_cols=249 Identities=27% Similarity=0.405 Sum_probs=206.1
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
+.|+..+.||+|+||+||+|+.. +|+.||||++...........+.+.+|+.++++++||||+++++++.+++..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 56889999999999999999974 78999999998665555555677899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||++ |++.+++......+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 134 e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~--- 206 (348)
T 1u5q_A 134 EYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP--- 206 (348)
T ss_dssp ECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS---
T ss_pred ecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCC---
Confidence 9998 588888875567899999999999999999999999 999999999999999999999999999986532
Q ss_pred CccccccccccccCccccc---cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccc
Q 001253 968 KSMSAIAGSYGYIAPEYAY---TMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARL 1044 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~---~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1114)
.....||+.|+|||++. +..++.++|||||||++|||++|+.||.... ....+......... ..
T Consensus 207 --~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~----~~~~~~~~~~~~~~-------~~ 273 (348)
T 1u5q_A 207 --ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN----AMSALYHIAQNESP-------AL 273 (348)
T ss_dssp --BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----HHHHHHHHHHSCCC-------CC
T ss_pred --CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC----hHHHHHHHHhcCCC-------CC
Confidence 23457999999999984 5678999999999999999999999996433 22233332222110 00
Q ss_pred cCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 001253 1045 NLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLM 1082 (1114)
Q Consensus 1045 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 1082 (1114)
........+.+++.+||+.||++|||++|+++.
T Consensus 274 -----~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 274 -----QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp -----CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred -----CCCCCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 011122457889999999999999999999764
No 154
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=2.2e-38 Score=352.27 Aligned_cols=257 Identities=19% Similarity=0.326 Sum_probs=205.0
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CC-------cEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TG-------HTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH 879 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g-------~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 879 (1114)
.++|++.+.||+|+||+||+|+++ ++ ..||+|++..... ...+.+.+|+.++++++||||+++++++.+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 83 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHR---NYSESFFEAASMMSKLSHKHLVLNYGVCVC 83 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGG---GGHHHHHHHHHHHHTSCCTTBCCEEEEECC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccH---HHHHHHHHHHHHHHhCCCCCEeEEEEEEEe
Confidence 468999999999999999999975 33 4799999865432 335678999999999999999999999999
Q ss_pred cCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCC--------e
Q 001253 880 QGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFE--------A 951 (1114)
Q Consensus 880 ~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~--------~ 951 (1114)
++..++||||+++|+|.+++......+++..+..++.|+++||+|||+. +|+||||||+||+++.++. +
T Consensus 84 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~ 160 (289)
T 4fvq_A 84 GDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFI 160 (289)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCccccccccee
Confidence 9999999999999999999987666699999999999999999999999 9999999999999998887 9
Q ss_pred EEeeccCceecCCCCCCccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHH
Q 001253 952 HVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFI 1030 (1114)
Q Consensus 952 kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~ 1030 (1114)
||+|||.+.... ......|++.|+|||++.+ ..++.++||||+|+++|||++|..|+..... ...... ..
T Consensus 161 kl~Dfg~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~---~~~~~~-~~ 231 (289)
T 4fvq_A 161 KLSDPGISITVL-----PKDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALD---SQRKLQ-FY 231 (289)
T ss_dssp EECCCCSCTTTS-----CHHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSC---HHHHHH-HH
T ss_pred eeccCccccccc-----CccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccc---hHHHHH-Hh
Confidence 999999987542 1234568899999999987 6789999999999999999996555432222 111111 11
Q ss_pred hcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCc
Q 001253 1031 RNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHF 1093 (1114)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~ 1093 (1114)
....... .. ....+.+++.+||+.||++|||++|+++.|+++....+..
T Consensus 232 ~~~~~~~----------~~----~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~~~ 280 (289)
T 4fvq_A 232 EDRHQLP----------AP----KAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDLVP 280 (289)
T ss_dssp HTTCCCC----------CC----SSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC------
T ss_pred hccCCCC----------CC----CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCCC
Confidence 1111000 00 1224778999999999999999999999999997655443
No 155
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=2.7e-37 Score=352.48 Aligned_cols=275 Identities=26% Similarity=0.336 Sum_probs=217.6
Q ss_pred CCHHHHHHHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhc--CCCCceeeEEeE
Q 001253 799 FTFKDLVVATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGK--IRHRNIVKLYGF 876 (1114)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~ 876 (1114)
..+.......++|++.+.||+|+||+||+|+++ |+.||||++.... .+.+.+|++++.. ++||||++++++
T Consensus 32 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~------~~~~~~e~~~~~~~~l~h~ni~~~~~~ 104 (342)
T 1b6c_B 32 LPLLVQRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE------ERSWFREAEIYQTVMLRHENILGFIAA 104 (342)
T ss_dssp SCHHHHHHHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEECGGG------HHHHHHHHHHHHHSCCCCTTBCCEEEE
T ss_pred CceeecccccccEEEEeeecCCCCcEEEEEEEc-CccEEEEEeCchh------HHHHHHHHHHHHHhhcCCCcEEEEEee
Confidence 344444556689999999999999999999985 8999999986432 4556778888776 789999999999
Q ss_pred EEecC----ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEecCCCCCCeE
Q 001253 877 CYHQG----SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLH--------HDCKPRIFHRDIKSNNIL 944 (1114)
Q Consensus 877 ~~~~~----~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH~Dlk~~Nil 944 (1114)
+.... ..++||||+++|+|.++++. ..+++.++..++.|++.||+||| +. +|+||||||+||+
T Consensus 105 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIl 179 (342)
T 1b6c_B 105 DNKDNGTWTQLWLVSDYHEHGSLFDYLNR--YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNIL 179 (342)
T ss_dssp EECCCSSCCCEEEEECCCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEE
T ss_pred ecccCCccceeEEEEeecCCCcHHHHHhc--cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEE
Confidence 98876 78999999999999999974 36899999999999999999999 66 9999999999999
Q ss_pred ECCCCCeEEeeccCceecCCCCCC---ccccccccccccCccccccC------CCCcccchHHHHHHHHHHHhC------
Q 001253 945 LDDKFEAHVGDFGLAKVIDMPQSK---SMSAIAGSYGYIAPEYAYTM------KVTEKCDIYSYGVVLLELLTG------ 1009 (1114)
Q Consensus 945 l~~~~~~kl~DfG~a~~~~~~~~~---~~~~~~g~~~y~aPE~~~~~------~~~~~~DvwslGvil~el~tg------ 1009 (1114)
++.++.+||+|||+++........ ......||+.|+|||++.+. .++.++|||||||++|||++|
T Consensus 180 l~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~ 259 (342)
T 1b6c_B 180 VKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGI 259 (342)
T ss_dssp ECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTB
T ss_pred ECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCc
Confidence 999999999999999876533321 23445799999999998765 334689999999999999999
Q ss_pred ----CCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHh
Q 001253 1010 ----RAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSE 1085 (1114)
Q Consensus 1010 ----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~ 1085 (1114)
+.||............+...+...... +.... ..........+.+++.+||+.||++|||+.|+++.|++
T Consensus 260 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~ 333 (342)
T 1b6c_B 260 HEDYQLPYYDLVPSDPSVEEMRKVVCEQKLR-----PNIPN-RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQ 333 (342)
T ss_dssp CCCCCCTTTTTSCSSCCHHHHHHHHTTSCCC-----CCCCG-GGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHH
T ss_pred ccccccCccccCcCcccHHHHHHHHHHHHhC-----CCCcc-cccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHH
Confidence 778876554443333333333222111 11100 01223556689999999999999999999999999999
Q ss_pred hhccCC
Q 001253 1086 SNRRQG 1091 (1114)
Q Consensus 1086 i~~~~~ 1091 (1114)
+....+
T Consensus 334 i~~~~~ 339 (342)
T 1b6c_B 334 LSQQEG 339 (342)
T ss_dssp HHHTTC
T ss_pred HHHHhc
Confidence 977654
No 156
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.4e-38 Score=360.02 Aligned_cols=262 Identities=27% Similarity=0.401 Sum_probs=201.0
Q ss_pred cCCcCCceecccCCeEEEEEEeC--CC--cEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe-cCce
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR--TG--HTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH-QGSN 883 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~--~g--~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~ 883 (1114)
..|+..++||+|+||+||+|++. ++ ..||||++.... .....+.+.+|+.++++++||||+++++++.. ++..
T Consensus 89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ 166 (373)
T 3c1x_A 89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT--DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP 166 (373)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCS--CSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCC
T ss_pred ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCe
Confidence 35777889999999999999964 22 468999986533 23346778999999999999999999998754 5578
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
++||||+++|+|.++++.....+++..+..++.|+++||+|||+. +|+||||||+||++++++.+||+|||+++...
T Consensus 167 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~ 243 (373)
T 3c1x_A 167 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMY 243 (373)
T ss_dssp EEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred EEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeecccccccc
Confidence 999999999999999987777899999999999999999999999 99999999999999999999999999998654
Q ss_pred CCCC---CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCccccc
Q 001253 964 MPQS---KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGM 1039 (1114)
Q Consensus 964 ~~~~---~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1114)
.... .......+|+.|+|||++.+..++.++|||||||++|||++ |.+||..... .+....+. .+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~-~~~~~~~~----~~~~---- 314 (373)
T 3c1x_A 244 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT-FDITVYLL----QGRR---- 314 (373)
T ss_dssp --------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCS-SCHHHHHH----TTCC----
T ss_pred ccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCH-HHHHHHHH----cCCC----
Confidence 3221 12234467889999999999999999999999999999999 6667764433 33322221 1110
Q ss_pred ccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCC
Q 001253 1040 LDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGH 1092 (1114)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~ 1092 (1114)
. ..+......+.+++.+||+.||++|||++|+++.|+++......
T Consensus 315 ----~----~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~ 359 (373)
T 3c1x_A 315 ----L----LQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 359 (373)
T ss_dssp ----C----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCS
T ss_pred ----C----CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhccc
Confidence 0 01111234688999999999999999999999999999765443
No 157
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=8.7e-38 Score=371.97 Aligned_cols=251 Identities=23% Similarity=0.299 Sum_probs=208.3
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.++||+|+||+||+|+.+ +|+.||+|++.+.........+.+..|+.++++++||||+++++++.+.+..|+|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 367999999999999999999986 7999999999765432223356788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccC---CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 887 YEYMARGSLGELLHGA---SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~---~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
|||++||+|.+++... ...+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~ 340 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELK 340 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence 9999999999998743 34699999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDAR 1043 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||.............+......
T Consensus 341 ~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~---------- 409 (543)
T 3c4z_A 341 AGQ-TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQA---------- 409 (543)
T ss_dssp TTC-CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCC----------
T ss_pred CCC-cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcc----------
Confidence 322 223456899999999999999999999999999999999999999986654444444433322221
Q ss_pred ccCCCcccHHHHHHHHHHHhhccCCCCCCCCCH
Q 001253 1044 LNLQDEKTVSHMITVLKIAMLCTNISPFDRPTM 1076 (1114)
Q Consensus 1044 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 1076 (1114)
. ..+......+.+++.+||+.||++||++
T Consensus 410 ~----~~p~~~s~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 410 V----TYPDKFSPASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp C----CCCTTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred c----CCCcccCHHHHHHHHHhccCCHhHCCCC
Confidence 0 1111223467889999999999999975
No 158
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=8.2e-39 Score=385.47 Aligned_cols=264 Identities=25% Similarity=0.404 Sum_probs=214.8
Q ss_pred HHHHHHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC
Q 001253 802 KDLVVATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG 881 (1114)
Q Consensus 802 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 881 (1114)
+.+++..++|++.++||+|+||+||+|+++.+..||||+++..... .+.|.+|+.++++++||||+++++++.+ +
T Consensus 260 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~----~~~~~~E~~~l~~l~hpniv~~~~~~~~-~ 334 (535)
T 2h8h_A 260 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS----PEAFLQEAQVMKKLRHEKLVQLYAVVSE-E 334 (535)
T ss_dssp TCSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSC----HHHHHHHHHHHHHCCCTTBCCEEEEECS-S
T ss_pred cceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCC----HHHHHHHHHHHHhCCCCCEeeEEEEEee-c
Confidence 3344566889999999999999999999998888999999765432 4678999999999999999999999876 6
Q ss_pred ceEEEEecCCCCCHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 882 SNLLMYEYMARGSLGELLHGA-SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
..|+||||+++|+|.++++.. ...+++.++..++.|+++||+|||+. +|+||||||+|||+++++.+||+|||+++
T Consensus 335 ~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~ 411 (535)
T 2h8h_A 335 PIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLAR 411 (535)
T ss_dssp SCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTT
T ss_pred cceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccce
Confidence 789999999999999999743 34689999999999999999999999 99999999999999999999999999998
Q ss_pred ecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCccccc
Q 001253 961 VIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGM 1039 (1114)
Q Consensus 961 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1114)
..............++..|+|||++.+..++.++|||||||++|||++ |+.||..... .+... .+..+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~----~~~~~-~i~~~~----- 481 (535)
T 2h8h_A 412 LIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN----REVLD-QVERGY----- 481 (535)
T ss_dssp TCCCHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCH----HHHHH-HHHTTC-----
T ss_pred ecCCCceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH----HHHHH-HHHcCC-----
Confidence 654221112233457789999999999999999999999999999999 8999975432 22222 222211
Q ss_pred ccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1040 LDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
+. ..+......+.++|.+||+.||++|||+++|++.|+++....
T Consensus 482 ---~~----~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~ 525 (535)
T 2h8h_A 482 ---RM----PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST 525 (535)
T ss_dssp ---CC----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCC
T ss_pred ---CC----CCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhcc
Confidence 00 111122346889999999999999999999999999986543
No 159
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-38 Score=356.81 Aligned_cols=259 Identities=25% Similarity=0.425 Sum_probs=203.5
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcE----EEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHT----VAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS 882 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~----vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 882 (1114)
.++|++.++||+|+||+||+|++. +++. ||+|.+..... ....+.+.+|+.++++++||||+++++++..+.
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~- 90 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATS--PKANKEILDEAYVMASVDNPHVCRLLGICLTST- 90 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSS--CCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccC--HHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-
Confidence 468999999999999999999975 4544 57777654332 233677899999999999999999999998754
Q ss_pred eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 883 NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
.++|+||+.+|+|.+++......+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 91 ~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~ 167 (327)
T 3lzb_A 91 VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167 (327)
T ss_dssp EEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC----
T ss_pred ceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeEc
Confidence 7899999999999999987777899999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCC-CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 963 DMPQS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 963 ~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
..... .......+|+.|+|||++.+..++.++||||+||++|||++ |+.||...... ..... +....
T Consensus 168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~-~~~~~----~~~~~------ 236 (327)
T 3lzb_A 168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS-EISSI----LEKGE------ 236 (327)
T ss_dssp ------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG-GHHHH----HHTTC------
T ss_pred cCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHH-HHHHH----HHcCC------
Confidence 43222 22234457889999999999999999999999999999999 99999754432 22221 11111
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
. ...+......+.+++.+||+.||.+||++.|+++.|+++...
T Consensus 237 --~----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 279 (327)
T 3lzb_A 237 --R----LPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp --C----CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred --C----CCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence 0 011112234688999999999999999999999999998643
No 160
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=2.4e-39 Score=362.73 Aligned_cols=266 Identities=27% Similarity=0.356 Sum_probs=191.7
Q ss_pred hcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhc--CCCCceeeEEeEEEecC----
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGK--IRHRNIVKLYGFCYHQG---- 881 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~---- 881 (1114)
.++|++.+.||+|+||+||+|+++ |+.||||++.... ...+.+|.+++.. ++||||+++++++....
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~------~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 74 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE------ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT 74 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-TT------HHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEecccc------hhhHHHHHHHHHHHhccCcceeeeeeecccCCCccc
Confidence 368999999999999999999876 8999999986432 3456678888877 79999999999998876
Q ss_pred ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH--------hCCCCCeEecCCCCCCeEECCCCCeEE
Q 001253 882 SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLH--------HDCKPRIFHRDIKSNNILLDDKFEAHV 953 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH--------~~~~~~ivH~Dlk~~Nill~~~~~~kl 953 (1114)
..++||||+++|+|.++++. ..+++..+..++.|++.||+||| +. +|+||||||+||+++.++.+||
T Consensus 75 ~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~~~~~~~kl 149 (303)
T 3gxj_A 75 QLWLVSDYHEHGSLFDYLNR--YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCI 149 (303)
T ss_dssp EEEEEEECCTTCCHHHHHHH--CCBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTCCC-B
T ss_pred eeEEEEeccCCCCHHHHHhc--cCcchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEECCCCCEEE
Confidence 78999999999999999974 36788889999999999999999 76 9999999999999999999999
Q ss_pred eeccCceecCCCCCC---ccccccccccccCccccccC------CCCcccchHHHHHHHHHHHhC----------CCCCC
Q 001253 954 GDFGLAKVIDMPQSK---SMSAIAGSYGYIAPEYAYTM------KVTEKCDIYSYGVVLLELLTG----------RAPVQ 1014 (1114)
Q Consensus 954 ~DfG~a~~~~~~~~~---~~~~~~g~~~y~aPE~~~~~------~~~~~~DvwslGvil~el~tg----------~~p~~ 1014 (1114)
+|||+++........ ......||+.|+|||++.+. .++.++|||||||++|||++| +.||.
T Consensus 150 ~DFg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~ 229 (303)
T 3gxj_A 150 ADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY 229 (303)
T ss_dssp CCCCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTT
T ss_pred eecCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeecccc
Confidence 999999765433221 12344799999999998766 445689999999999999999 66765
Q ss_pred CCCCCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCC
Q 001253 1015 PLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQG 1091 (1114)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~ 1091 (1114)
...........+...+..... .+.... ..........+.+++.+||+.||++|||++|+++.|+++....+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~~~ 300 (303)
T 3gxj_A 230 DLVPSDPSVEEMRKVVCEQKL-----RPNIPN-RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEG 300 (303)
T ss_dssp TTCC-CCCCC-CHHHHTTSCC-----CCCCCG-GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC--
T ss_pred ccCCCCccHHHHHHHHHHhhc-----CCCccc-cccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhhcc
Confidence 443222111111111111111 111100 01123556689999999999999999999999999999977654
No 161
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=1.4e-37 Score=347.46 Aligned_cols=260 Identities=26% Similarity=0.386 Sum_probs=206.6
Q ss_pred cCCcCCceecccCCeEEEEEEeCC----CcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEE-ecCce
Q 001253 809 DNFDERFVIGRGACGTVYRAVLRT----GHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCY-HQGSN 883 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~~----g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~-~~~~~ 883 (1114)
.+|++.++||+|+||+||+|++.+ +..||+|++.... .....+.+.+|+.++++++||||+++++++. .++..
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 102 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRIT--DIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP 102 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCC--SHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCC
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCC--CHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCce
Confidence 568889999999999999999652 2358999987533 3334567889999999999999999999865 45678
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
++||||+++|+|.++++.....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 103 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~ 179 (298)
T 3f66_A 103 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMY 179 (298)
T ss_dssp EEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCCCS
T ss_pred EEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECccccccccc
Confidence 999999999999999987777899999999999999999999999 99999999999999999999999999998654
Q ss_pred CCCC---CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhC-CCCCCCCCCCCCHHHHHHHHHhcCCccccc
Q 001253 964 MPQS---KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTG-RAPVQPLDQGGDLVTWVRNFIRNNSLVSGM 1039 (1114)
Q Consensus 964 ~~~~---~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1114)
.... .......+|+.|+|||.+.+..++.++||||+|+++|||++| .+||... ...+....+.. ...
T Consensus 180 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-~~~~~~~~~~~---~~~----- 250 (298)
T 3f66_A 180 DKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV-NTFDITVYLLQ---GRR----- 250 (298)
T ss_dssp CGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTS-CTTTHHHHHHT---TCC-----
T ss_pred ccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccC-CHHHHHHHHhc---CCC-----
Confidence 3221 223345678899999999999999999999999999999995 4555433 33333222211 100
Q ss_pred ccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1040 LDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
...+......+.+++.+||+.||++|||++|+++.|+++....
T Consensus 251 --------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~ 293 (298)
T 3f66_A 251 --------LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTF 293 (298)
T ss_dssp --------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTS
T ss_pred --------CCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhh
Confidence 0001112246889999999999999999999999999987643
No 162
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=7.4e-38 Score=369.87 Aligned_cols=264 Identities=23% Similarity=0.303 Sum_probs=198.2
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC-----
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG----- 881 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----- 881 (1114)
.++|++.++||+|+||+||+|++. +|+.||||++..... .....+.+.+|+.+++.++||||+++++++...+
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 139 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 139 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGG-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECcccc-ChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence 478999999999999999999976 789999999976532 3344567889999999999999999999997553
Q ss_pred -ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 882 -SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 882 -~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
..|+||||+++ ++.+.+. ..+++..+..++.|+++||+|||+. +|+||||||+|||++.++.+||+|||+|+
T Consensus 140 ~~~~lv~E~~~~-~l~~~~~---~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a~ 212 (464)
T 3ttj_A 140 QDVYLVMELMDA-NLCQVIQ---MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLAR 212 (464)
T ss_dssp CEEEEEEECCSE-EHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC-
T ss_pred CeEEEEEeCCCC-CHHHHHh---hcCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEeee
Confidence 46999999987 5666665 2489999999999999999999999 99999999999999999999999999998
Q ss_pred ecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH------------
Q 001253 961 VIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRN------------ 1028 (1114)
Q Consensus 961 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~------------ 1028 (1114)
.... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.+..+.+...++.
T Consensus 213 ~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~ 290 (464)
T 3ttj_A 213 TAGT--SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKL 290 (464)
T ss_dssp ------CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTS
T ss_pred ecCC--CcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHc
Confidence 7542 23345578999999999999999999999999999999999999999754422211111110
Q ss_pred ------HHhcCCccccc-----ccc-cccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1029 ------FIRNNSLVSGM-----LDA-RLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1029 ------~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
+.......... ... ...............+.+++.+||++||++|||++|+++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 291 QPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp CHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred chhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 01000000000 000 000001111222567899999999999999999999886
No 163
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=8.6e-38 Score=352.96 Aligned_cols=254 Identities=23% Similarity=0.286 Sum_probs=208.5
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCCh---hhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNN---NVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN 883 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 883 (1114)
.++|++.+.||+|+||+||+|+.+ +|+.||+|++........ ...+.+.+|+.+++.++||||+++++++.+.+..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 367999999999999999999986 689999999986543321 2356789999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC----CeEEeeccCc
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF----EAHVGDFGLA 959 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~DfG~a 959 (1114)
++||||+++++|.+++.. ...+++..+..++.|+++||+|||+. +|+||||||+||+++.++ .+||+|||++
T Consensus 91 ~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~ 166 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQ-KESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (321)
T ss_dssp EEEECCCCSCBHHHHHHT-CSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCTTC
T ss_pred EEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccCccc
Confidence 999999999999999974 45789999999999999999999999 999999999999999888 7999999999
Q ss_pred eecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccc
Q 001253 960 KVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGM 1039 (1114)
Q Consensus 960 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1114)
+..... .......||+.|+|||++.+..++.++||||+|+++|+|++|+.||.... ........... ..
T Consensus 167 ~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~i~~~-~~---- 235 (321)
T 2a2a_A 167 HEIEDG--VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDT----KQETLANITSV-SY---- 235 (321)
T ss_dssp EECCTT--CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS----HHHHHHHHHTT-CC----
T ss_pred eecCcc--ccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCC----HHHHHHHHHhc-cc----
Confidence 876532 22345579999999999999999999999999999999999999996432 22222222211 10
Q ss_pred ccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1040 LDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.............+.+++.+||+.||++|||+.|+++
T Consensus 236 -----~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 236 -----DFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp -----CCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred -----ccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 0000011112346889999999999999999999986
No 164
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.5e-37 Score=365.71 Aligned_cols=347 Identities=24% Similarity=0.365 Sum_probs=190.7
Q ss_pred cccccccceeccccccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCcccCccccccccccccch
Q 001253 195 GNLKRLKSFRAGQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLET 274 (1114)
Q Consensus 195 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 274 (1114)
..+++|+.|++.++.+. .+| .+..+++|++|+|++|.+++. |. ++.+++|++|++++|++++..+ ++++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34677888888888776 344 367778888888888888754 33 7788888888888888876544 777778888
Q ss_pred hhcccccccCCchhhhcCCCccceeeecccccccccCccccccccccccccccccCCCCCchhhhcccccceeecccccc
Q 001253 275 LALYDNKQVGQLPKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKL 354 (1114)
Q Consensus 275 L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l 354 (1114)
|++++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|++|+++ |.+.+.. .+.++++|+.|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 8887777665533 7777777777777777763 22 35566666666664 3333221 144445555555555554
Q ss_pred cCcccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccc
Q 001253 355 TGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHI 434 (1114)
Q Consensus 355 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 434 (1114)
++. ..+..+++|++|++++|.+++..+ +. .+++|++|++++|++++. ..+
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~------------------------~l~~L~~L~l~~n~l~~~--~~l 239 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LG------------------------ILTNLDELSLNGNQLKDI--GTL 239 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GG------------------------GCTTCCEEECCSSCCCCC--GGG
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--cc------------------------ccCCCCEEECCCCCcccc--hhh
Confidence 432 124444444444444444443332 33 344444444444444422 233
Q ss_pred cccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcE
Q 001253 435 CRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQR 514 (1114)
Q Consensus 435 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 514 (1114)
..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 444445555555555443322 4444555555555555543222 4445555555555555554332 445555555
Q ss_pred EEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccC
Q 001253 515 LHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENEL 594 (1114)
Q Consensus 515 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 594 (1114)
|+|++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|.+
T Consensus 314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 5555555554333 44455555555555555432 234445555555555555554443 45555555555555555
Q ss_pred CC
Q 001253 595 SG 596 (1114)
Q Consensus 595 ~~ 596 (1114)
++
T Consensus 388 ~~ 389 (466)
T 1o6v_A 388 TN 389 (466)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 165
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.9e-37 Score=364.64 Aligned_cols=346 Identities=27% Similarity=0.381 Sum_probs=197.8
Q ss_pred CCCCCCEEEccCCCcccccccccccccccceeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccce
Q 001253 124 NCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSF 203 (1114)
Q Consensus 124 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L 203 (1114)
.+++|+.|++++|.+.. +|+ +..+++|++|+|++|++++..| +.++++|++|++++|.+++..| +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 35667777777777764 443 6667777777777777764332 6666666666666666654333 5555555555
Q ss_pred eccccccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCcccCccccccccccccchhhccccccc
Q 001253 204 RAGQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQV 283 (1114)
Q Consensus 204 ~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~ 283 (1114)
++++|.+.+..+ +.++++|++|++++|++++ ++ .++.+++|++|+++ |.+.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~---------------------- 170 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL---------------------- 170 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC----------------------
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc----------------------
Confidence 555555543222 4455555555555555542 22 24444444444443 223222
Q ss_pred CCchhhhcCCCccceeeecccccccccCccccccccccccccccccCCCCCchhhhcccccceeecccccccCccccccc
Q 001253 284 GQLPKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELT 363 (1114)
Q Consensus 284 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 363 (1114)
.+ ++.+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..| +..+++|+.|++++|++++. ..+.
T Consensus 171 --~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~ 240 (466)
T 1o6v_A 171 --KP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLA 240 (466)
T ss_dssp --GG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred --hh--hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhh
Confidence 11 44444455555555544421 124444455555555555444333 44455555555555555543 2455
Q ss_pred ccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCcccee
Q 001253 364 TLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFL 443 (1114)
Q Consensus 364 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L 443 (1114)
.+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|+|++|++++..+ +..+++|++|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 56666666666666665443 5566666666666666655433 5566666666666666665433 5566667777
Q ss_pred eeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceec
Q 001253 444 NLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFT 523 (1114)
Q Consensus 444 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 523 (1114)
++++|++++..| +..+++|++|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|++++|.++
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 777777665544 56667777777777776643 356667777777777777766655 666777777777777776
Q ss_pred c
Q 001253 524 G 524 (1114)
Q Consensus 524 ~ 524 (1114)
+
T Consensus 389 ~ 389 (466)
T 1o6v_A 389 N 389 (466)
T ss_dssp C
T ss_pred C
Confidence 4
No 166
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=384.70 Aligned_cols=267 Identities=24% Similarity=0.324 Sum_probs=210.4
Q ss_pred hcCCcCCc-eecccCCeEEEEEEeC---CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce
Q 001253 808 TDNFDERF-VIGRGACGTVYRAVLR---TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN 883 (1114)
Q Consensus 808 ~~~~~~~~-~lG~G~~g~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 883 (1114)
.+++.+.+ +||+|+||+||+|.++ ++..||||+++..... ...+.+.+|+.++++++|||||++++++.. +..
T Consensus 334 ~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~--~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~ 410 (613)
T 2ozo_A 334 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEK--ADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EAL 410 (613)
T ss_dssp TTSEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSS--TTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSE
T ss_pred ccceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCCh--HHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCe
Confidence 34455555 7999999999999864 4667999999765332 236779999999999999999999999976 568
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
++||||+++|+|.+++......+++..+..++.|+++||+|||+. +|+||||||+|||++.++.+||+|||+++...
T Consensus 411 ~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~ 487 (613)
T 2ozo_A 411 MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALG 487 (613)
T ss_dssp EEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC
T ss_pred EEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCccccc
Confidence 999999999999999987777899999999999999999999999 99999999999999999999999999998754
Q ss_pred CCCCC--ccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 964 MPQSK--SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 964 ~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
..... ......+++.|+|||++.+..++.++|||||||++|||++ |+.||...... + +...+..+..
T Consensus 488 ~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~----~-~~~~i~~~~~----- 557 (613)
T 2ozo_A 488 ADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP----E-VMAFIEQGKR----- 557 (613)
T ss_dssp --------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSH----H-HHHHHHTTCC-----
T ss_pred CCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHH----H-HHHHHHcCCC-----
Confidence 32221 1223346789999999999999999999999999999998 99999764431 1 1222222111
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCccccc
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFEFSP 1097 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~~~~ 1097 (1114)
. ..+......+.++|.+||+.||++||+++++++.|+++..........+
T Consensus 558 ---~----~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~~~~~~ 607 (613)
T 2ozo_A 558 ---M----ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVEGG 607 (613)
T ss_dssp ---C----CCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSCSCCCS
T ss_pred ---C----CCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhccccCCc
Confidence 1 1112233568899999999999999999999999999866554444333
No 167
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=4.3e-38 Score=356.53 Aligned_cols=272 Identities=25% Similarity=0.343 Sum_probs=211.0
Q ss_pred hcCCcCCceecccCCeEEEEEEe-----CCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEE--ec
Q 001253 808 TDNFDERFVIGRGACGTVYRAVL-----RTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCY--HQ 880 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~-----~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~ 880 (1114)
.++|++.+.||+|+||+||+|++ .+++.||||++.... ....+.+.+|+.++++++||||+++++++. +.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~ 98 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG---PDQQRDFQREIQILKALHSDFIVKYRGVSYGPGR 98 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC---HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSS
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC---HHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCC
Confidence 37899999999999999999994 368899999997543 334567899999999999999999999987 44
Q ss_pred CceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 881 GSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 881 ~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
...++||||+++++|.+++......+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~ 175 (327)
T 3lxl_A 99 QSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAK 175 (327)
T ss_dssp CEEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCE
T ss_pred ceEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcccccce
Confidence 568899999999999999986556799999999999999999999998 99999999999999999999999999998
Q ss_pred ecCCCCCC--ccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCC----------CCCHHHHHHH
Q 001253 961 VIDMPQSK--SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQ----------GGDLVTWVRN 1028 (1114)
Q Consensus 961 ~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~----------~~~~~~~~~~ 1028 (1114)
........ ......||+.|+|||++.+..++.++||||+|+++|+|++|+.||..... .......+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (327)
T 3lxl_A 176 LLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLE 255 (327)
T ss_dssp ECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHH
T ss_pred ecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHH
Confidence 76433221 22345688899999999999999999999999999999999999853221 0011111111
Q ss_pred HHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCccccc
Q 001253 1029 FIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFEFSP 1097 (1114)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~~~~ 1097 (1114)
....+. ....+......+.+++.+||+.||++|||++|+++.|+++..........+
T Consensus 256 ~~~~~~------------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~~~~~ 312 (327)
T 3lxl_A 256 LLEEGQ------------RLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRGCETHA 312 (327)
T ss_dssp HHHTTC------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-----------
T ss_pred Hhhccc------------CCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcCccccc
Confidence 111110 011122334568899999999999999999999999999966555444333
No 168
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=3.1e-38 Score=360.20 Aligned_cols=275 Identities=15% Similarity=0.197 Sum_probs=205.2
Q ss_pred hcCCcCCceecccCCeEEEEEEeC----CCcEEEEEEecccCCCChh--------hHHHHHHHHHHHhcCCCCceeeEEe
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR----TGHTVAVKKLASNREGNNN--------VDNSFRAEILTLGKIRHRNIVKLYG 875 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~--------~~~~~~~E~~~l~~l~h~niv~l~~ 875 (1114)
.++|++.+.||+|+||+||+|++. ++..||||++......... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 468999999999999999999986 5788999998765331110 1233567888899999999999999
Q ss_pred EEEe----cCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC--
Q 001253 876 FCYH----QGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF-- 949 (1114)
Q Consensus 876 ~~~~----~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~-- 949 (1114)
++.. ....|+||||+ +++|.+++.... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~ 190 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKNPD 190 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSSTT
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCCCC
Confidence 9988 67889999999 899999998544 799999999999999999999999 999999999999999887
Q ss_pred CeEEeeccCceecCCCC------CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHH
Q 001253 950 EAHVGDFGLAKVIDMPQ------SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLV 1023 (1114)
Q Consensus 950 ~~kl~DfG~a~~~~~~~------~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~ 1023 (1114)
.+||+|||+++.+.... ........||+.|+|||++.+..++.++|||||||++|||++|+.||..........
T Consensus 191 ~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~ 270 (345)
T 2v62_A 191 QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAV 270 (345)
T ss_dssp SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHH
T ss_pred cEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHH
Confidence 99999999998764221 112245579999999999999999999999999999999999999996433222222
Q ss_pred HHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCcc
Q 001253 1024 TWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFE 1094 (1114)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~ 1094 (1114)
...+...... ..... .... . .......+.+++.+||+.||++||+++++++.|++.....+..+
T Consensus 271 ~~~~~~~~~~-~~~~~-~~~~---~--~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~~d 334 (345)
T 2v62_A 271 QTAKTNLLDE-LPQSV-LKWA---P--SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGIPLGPLD 334 (345)
T ss_dssp HHHHHHHHHT-TTHHH-HHHS---C--TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCCCCCCCC
T ss_pred HHHHHhhccc-ccHHH-Hhhc---c--ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCCcccCCC
Confidence 2222211110 00000 0000 0 00122368899999999999999999999999999765443333
No 169
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7.3e-38 Score=355.09 Aligned_cols=263 Identities=25% Similarity=0.419 Sum_probs=207.7
Q ss_pred hcCCcCCceecccCCeEEEEEEeCC-----CcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLRT-----GHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS 882 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~~-----g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 882 (1114)
.++|+..+.||+|+||+||+|+++. +..||||++.... .......+.+|+.++++++||||+++++++.+.+.
T Consensus 43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 120 (333)
T 1mqb_A 43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGY--TEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKP 120 (333)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTC--CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCC
Confidence 3678888999999999999998652 2469999997543 23345678899999999999999999999999999
Q ss_pred eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 883 NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
.++||||+++|+|.+++......+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 121 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~ 197 (333)
T 1mqb_A 121 MMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVL 197 (333)
T ss_dssp EEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred cEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchhh
Confidence 9999999999999999987777899999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCCC--ccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCccccc
Q 001253 963 DMPQSK--SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGM 1039 (1114)
Q Consensus 963 ~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1114)
...... ......+|+.|+|||++.+..++.++||||+||++|||++ |+.||..... ...... +..+..
T Consensus 198 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~----~~~~~~-~~~~~~---- 268 (333)
T 1mqb_A 198 EDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN----HEVMKA-INDGFR---- 268 (333)
T ss_dssp -------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH----HHHHHH-HHTTCC----
T ss_pred ccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCH----HHHHHH-HHCCCc----
Confidence 432221 1223356789999999999999999999999999999999 9999964332 222222 221110
Q ss_pred ccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCC
Q 001253 1040 LDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGH 1092 (1114)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~ 1092 (1114)
...+......+.+++.+||+.||++||++.|+++.|+++......
T Consensus 269 --------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~ 313 (333)
T 1mqb_A 269 --------LPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDS 313 (333)
T ss_dssp --------CCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGG
T ss_pred --------CCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcchh
Confidence 011112234688999999999999999999999999998665443
No 170
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=1.3e-37 Score=345.10 Aligned_cols=253 Identities=24% Similarity=0.327 Sum_probs=207.2
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|.++ +|+.||+|++...... ....+.+.+|+.++++++||||+++++++.+++..++|
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v 83 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLS-ARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 83 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCC-HHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence 478999999999999999999976 6899999999765543 33456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCC---eEEeeccCceecC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFE---AHVGDFGLAKVID 963 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~DfG~a~~~~ 963 (1114)
|||+++++|.+.+... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++. +||+|||.+....
T Consensus 84 ~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~ 159 (284)
T 3kk8_A 84 FDLVTGGELFEDIVAR-EFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 159 (284)
T ss_dssp ECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred EecCCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcc
Confidence 9999999999888743 5689999999999999999999999 9999999999999987655 9999999998764
Q ss_pred CCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDAR 1043 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
. ........|++.|+|||++.+..++.++||||+|+++|+|++|+.||.... ........... ..
T Consensus 160 ~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~----~~~~~~~~~~~-~~-------- 224 (284)
T 3kk8_A 160 D--SEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED----QHRLYAQIKAG-AY-------- 224 (284)
T ss_dssp S--SCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHT-CC--------
T ss_pred c--CccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCc----hhHHHHHHHhc-cc--------
Confidence 2 233345679999999999999999999999999999999999999996433 22222221111 11
Q ss_pred ccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1044 LNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1044 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.............+.+++.+||+.||++|||+.|+++
T Consensus 225 -~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 225 -DYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK 261 (284)
T ss_dssp -CCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -cCCchhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 0001111122346889999999999999999999987
No 171
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=2.5e-38 Score=357.90 Aligned_cols=257 Identities=25% Similarity=0.404 Sum_probs=204.5
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcE----EEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHT----VAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN 883 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~----vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 883 (1114)
++|++.++||+|+||+||+|++. +++. ||+|++...... ...+.+.+|+.++++++||||+++++++. ++..
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~--~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~ 89 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGR--QSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSL 89 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSC--SCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccH--HHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCcc
Confidence 67999999999999999999975 4443 788877544322 12345678999999999999999999986 5678
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
++||||+++|+|.+++......+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 90 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~ 166 (325)
T 3kex_A 90 QLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLLP 166 (325)
T ss_dssp EEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGSC
T ss_pred EEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCcccccC
Confidence 999999999999999987666899999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCC-CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCccccccc
Q 001253 964 MPQS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLD 1041 (1114)
Q Consensus 964 ~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1114)
.... .......|++.|+|||++.+..++.++||||+||++|||++ |+.||...... .... .+......
T Consensus 167 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~-~~~~----~~~~~~~~----- 236 (325)
T 3kex_A 167 PDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA-EVPD----LLEKGERL----- 236 (325)
T ss_dssp CCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTT-HHHH----HHHTTCBC-----
T ss_pred cccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHH-HHHH----HHHcCCCC-----
Confidence 3332 22345568889999999999999999999999999999999 99999754322 1111 12211110
Q ss_pred ccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001253 1042 ARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNR 1088 (1114)
Q Consensus 1042 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~ 1088 (1114)
. .+......+.+++.+||+.||++|||++|+++.|+++..
T Consensus 237 ---~----~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~ 276 (325)
T 3kex_A 237 ---A----QPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMAR 276 (325)
T ss_dssp ---C----CCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred ---C----CCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 0 011112247789999999999999999999999998854
No 172
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.2e-38 Score=355.44 Aligned_cols=245 Identities=24% Similarity=0.338 Sum_probs=203.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCCh-----hhHHHHHHHHHHHhcCCCCceeeEEeEEEecC
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNN-----NVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG 881 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 881 (1114)
.++|++.+.||+|+||+||+|+++ +++.||||++........ ...+.+.+|+.++++++||||+++++++.+.+
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~ 102 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG 102 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence 468999999999999999999975 789999999986643221 12335678999999999999999999999999
Q ss_pred ceEEEEecCCCC-CHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 882 SNLLMYEYMARG-SLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 882 ~~~lv~E~~~~g-sL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
..++||||+.+| +|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 103 ~~~lv~e~~~~g~~l~~~~~~-~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~ 178 (335)
T 3dls_A 103 FFQLVMEKHGSGLDLFAFIDR-HPRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDFGSAA 178 (335)
T ss_dssp EEEEEEECCTTSCBHHHHHHT-CCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EEEEEEEeCCCCccHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeecccce
Confidence 999999999777 99999974 34699999999999999999999999 99999999999999999999999999998
Q ss_pred ecCCCCCCccccccccccccCccccccCCC-CcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccc
Q 001253 961 VIDMPQSKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGM 1039 (1114)
Q Consensus 961 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1114)
.... ........||+.|+|||++.+..+ +.++||||+||++|||++|+.||......
T Consensus 179 ~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-------------------- 236 (335)
T 3dls_A 179 YLER--GKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET-------------------- 236 (335)
T ss_dssp ECCT--TCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG--------------------
T ss_pred ECCC--CCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH--------------------
Confidence 7643 233345679999999999988877 78999999999999999999999642210
Q ss_pred ccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 001253 1040 LDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLM 1082 (1114)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 1082 (1114)
...... .+......+.+++.+||+.||++|||++|+++.
T Consensus 237 ~~~~~~----~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 237 VEAAIH----PPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp TTTCCC----CSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred HhhccC----CCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 011111 111123468899999999999999999999874
No 173
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=4.1e-38 Score=348.13 Aligned_cols=250 Identities=27% Similarity=0.392 Sum_probs=204.3
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|+++ +++.||+|++.............+.+|+.++++++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 468999999999999999999976 6789999999765433333456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++.....
T Consensus 88 ~e~~~~~~l~~~l~~~-~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~-- 161 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKL-SKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAPS-- 161 (279)
T ss_dssp ECCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC----
T ss_pred EecCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCCc--
Confidence 9999999999999743 4689999999999999999999998 999999999999999999999999999865432
Q ss_pred CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
.......|++.|+|||.+.+..++.++||||+|+++|+|++|+.||.... .............
T Consensus 162 -~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----~~~~~~~~~~~~~------------ 224 (279)
T 3fdn_A 162 -SRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT----YQETYKRISRVEF------------ 224 (279)
T ss_dssp -------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHHTCC------------
T ss_pred -ccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCc----HHHHHHHHHhCCC------------
Confidence 22344579999999999999999999999999999999999999996432 2222222211110
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLM 1082 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 1082 (1114)
..+......+.+++.+||+.||++|||++|+++.
T Consensus 225 --~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 225 --TFPDFVTEGARDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp --CCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred --CCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 0111123457889999999999999999999863
No 174
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=350.97 Aligned_cols=266 Identities=23% Similarity=0.336 Sum_probs=201.8
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.++||+|+||+||+|++. +|+.||||++..... .....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESED-DPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF 81 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC--HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeecccc-chHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence 57999999999999999999986 689999999876543 3344567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+++++|.++++. ...+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||.++......
T Consensus 82 e~~~~~~l~~~~~~-~~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 156 (311)
T 4agu_A 82 EYCDHTVLHELDRY-QRGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGPS- 156 (311)
T ss_dssp ECCSEEHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC----
T ss_pred EeCCCchHHHHHhh-hcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcc-
Confidence 99999999998873 45689999999999999999999999 99999999999999999999999999998764322
Q ss_pred CccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHH-----------hcCCc
Q 001253 968 KSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFI-----------RNNSL 1035 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~-----------~~~~~ 1035 (1114)
.......||+.|+|||++.+ ..++.++||||+|+++|+|++|+.||.......... .+.... ....+
T Consensus 157 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 235 (311)
T 4agu_A 157 DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLY-LIRKTLGDLIPRHQQVFSTNQY 235 (311)
T ss_dssp ---------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH-HHHHHHCSCCHHHHHHHHTCGG
T ss_pred cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHH-HHHHHhcccccccccccccccc
Confidence 22345579999999999876 668999999999999999999999997544322111 111111 11111
Q ss_pred ccccccccccCCCc---ccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1036 VSGMLDARLNLQDE---KTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1036 ~~~~~~~~~~~~~~---~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
......+....... ........+.+++.+||+.||++|||++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 236 FSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp GTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred cccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 11110000000000 00122346889999999999999999999885
No 175
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=6.8e-38 Score=354.21 Aligned_cols=251 Identities=24% Similarity=0.287 Sum_probs=196.0
Q ss_pred hcCCcCCceecccCCeEEEEEEe----CCCcEEEEEEecccCCC-ChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc
Q 001253 808 TDNFDERFVIGRGACGTVYRAVL----RTGHTVAVKKLASNREG-NNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS 882 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~----~~g~~vavK~~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 882 (1114)
.++|++.++||+|+||+||+|+. .+|+.||+|+++..... .......+.+|+.+++.++||||+++++++.+++.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 46899999999999999999997 47899999999765321 12234557789999999999999999999999999
Q ss_pred eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 883 NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
.|+||||+++|+|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 96 ~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~ 171 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLER-EGIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCKES 171 (327)
T ss_dssp EEEEEECCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred EEEEEeCCCCCcHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence 9999999999999999974 34688999999999999999999999 9999999999999999999999999999864
Q ss_pred CCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccc
Q 001253 963 DMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDA 1042 (1114)
Q Consensus 963 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1114)
... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||.... ............
T Consensus 172 ~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~----~~~~~~~i~~~~--------- 237 (327)
T 3a62_A 172 IHD-GTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGEN----RKKTIDKILKCK--------- 237 (327)
T ss_dssp --------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS----HHHHHHHHHHTC---------
T ss_pred ccC-CccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCC----HHHHHHHHHhCC---------
Confidence 322 222345679999999999999999999999999999999999999997433 222333322211
Q ss_pred cccCCCcccHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 001253 1043 RLNLQDEKTVSHMITVLKIAMLCTNISPFDRP-----TMREVVL 1081 (1114)
Q Consensus 1043 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1081 (1114)
.. .+......+.+++.+||+.||++|| ++.|+++
T Consensus 238 -~~----~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 238 -LN----LPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp -CC----CCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred -CC----CCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 11 1111234688999999999999999 7777765
No 176
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=8.8e-38 Score=350.81 Aligned_cols=269 Identities=23% Similarity=0.328 Sum_probs=201.1
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCC--ChhhHHHHHHHHHHHhcC---CCCceeeEEeEEEe
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREG--NNNVDNSFRAEILTLGKI---RHRNIVKLYGFCYH 879 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~--~~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~ 879 (1114)
...++|++.++||+|+||+||+|+++ +|+.||||++...... .......+.+|+.+++++ +||||+++++++..
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~ 85 (308)
T 3g33_A 6 MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCAT 85 (308)
T ss_dssp ----CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred ccccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeec
Confidence 34578999999999999999999974 7899999999754321 112234566777777666 49999999999987
Q ss_pred cC-----ceEEEEecCCCCCHHHHhccCCC-CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEE
Q 001253 880 QG-----SNLLMYEYMARGSLGELLHGASS-TLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHV 953 (1114)
Q Consensus 880 ~~-----~~~lv~E~~~~gsL~~~l~~~~~-~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl 953 (1114)
.. ..++||||+++ +|.+++..... .+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||
T Consensus 86 ~~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl 161 (308)
T 3g33_A 86 SRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKL 161 (308)
T ss_dssp CCSSSEEEEEEEEECCCC-BHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEE
T ss_pred cCCCCceeEEEEehhhhc-CHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEE
Confidence 65 47899999975 99999975443 499999999999999999999999 9999999999999999999999
Q ss_pred eeccCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcC
Q 001253 954 GDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNN 1033 (1114)
Q Consensus 954 ~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 1033 (1114)
+|||+++... .........||+.|+|||++.+..++.++||||+||++|||++|+.||........... +.+.....
T Consensus 162 ~Dfg~a~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~-i~~~~~~~ 238 (308)
T 3g33_A 162 ADFGLARIYS--YQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGK-IFDLIGLP 238 (308)
T ss_dssp CSCSCTTTST--TCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHH-HHHHHCCC
T ss_pred eeCccccccC--CCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH-HHHHhCCC
Confidence 9999998654 22334556899999999999999999999999999999999999999975433221111 11111110
Q ss_pred C---cccccc--cccccCCCcc-----cHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1034 S---LVSGML--DARLNLQDEK-----TVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1034 ~---~~~~~~--~~~~~~~~~~-----~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
. +..... ...+...... ..+....+.+++.+||++||++|||+.|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 239 PEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp CTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 0 000000 0000000000 1122346889999999999999999999875
No 177
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=3.3e-38 Score=356.28 Aligned_cols=247 Identities=23% Similarity=0.351 Sum_probs=181.1
Q ss_pred CceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-CCceeeEEeEEEecCceEEEEecCC
Q 001253 814 RFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-HRNIVKLYGFCYHQGSNLLMYEYMA 891 (1114)
Q Consensus 814 ~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~E~~~ 891 (1114)
.++||+|+||+||+|+++ +++.||||++... ....+.+|+.+++.++ ||||+++++++.++...|+||||++
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~------~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~ 89 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR------MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLN 89 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG------GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh------hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccC
Confidence 378999999999999986 7899999999643 2456788999999997 9999999999999999999999999
Q ss_pred CCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC---CeEEeeccCceecCCCCCC
Q 001253 892 RGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF---EAHVGDFGLAKVIDMPQSK 968 (1114)
Q Consensus 892 ~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~kl~DfG~a~~~~~~~~~ 968 (1114)
+|+|.+++... ..+++.++..++.|+++||+|||+. +|+||||||+||+++.++ .+||+|||+++.... ...
T Consensus 90 ~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~-~~~ 164 (325)
T 3kn6_A 90 GGELFERIKKK-KHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPP-DNQ 164 (325)
T ss_dssp SCBHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC----
T ss_pred CCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCC-CCC
Confidence 99999999853 5799999999999999999999999 999999999999998765 899999999987542 223
Q ss_pred ccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCC---CCHHHHHHHHHhcCCccccccccccc
Q 001253 969 SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQG---GDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 969 ~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
.....+||+.|+|||++.+..++.++||||+||++|||++|+.||...... ....+.... +..+. ..
T Consensus 165 ~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~-i~~~~---------~~ 234 (325)
T 3kn6_A 165 PLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKK-IKKGD---------FS 234 (325)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHH-HTTTC---------CC
T ss_pred cccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHH-HHcCC---------CC
Confidence 334567899999999999999999999999999999999999999754421 122222222 22211 11
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
............+.+++.+||+.||++|||++|+++
T Consensus 235 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 235 FEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp CCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred CCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 111111223457889999999999999999998863
No 178
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=2.4e-38 Score=374.00 Aligned_cols=251 Identities=21% Similarity=0.244 Sum_probs=198.3
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.++||+|+||+||+|+.+ +|+.||||++.............+.+|+.+++.++||||+++++++.+.+..|+|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 467999999999999999999976 7899999999865333333345677899999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHH-DCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~ 965 (1114)
|||+++|+|.+++.. ...+++..+..++.|+++||+|||+ . +|+||||||+|||++.++.+||+|||+|+....
T Consensus 227 ~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~- 301 (446)
T 4ejn_A 227 MEYANGGELFFHLSR-ERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK- 301 (446)
T ss_dssp ECCCSSCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-
T ss_pred EeeCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceeccC-
Confidence 999999999999974 3478999999999999999999998 7 999999999999999999999999999985432
Q ss_pred CCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc
Q 001253 966 QSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 966 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
........+||+.|+|||++.+..++.++||||+||++|||++|+.||.... ............ ..
T Consensus 302 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~----~~~~~~~i~~~~----------~~ 367 (446)
T 4ejn_A 302 DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD----HEKLFELILMEE----------IR 367 (446)
T ss_dssp -----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCC----------CC
T ss_pred CCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCC----HHHHHHHHHhCC----------CC
Confidence 2233455789999999999999999999999999999999999999996433 222222222211 01
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRP-----TMREVVL 1081 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~ 1081 (1114)
.+......+.+++.+||+.||.+|| +++|+++
T Consensus 368 ----~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 368 ----FPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp ----CCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred ----CCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 1111234688999999999999999 9999875
No 179
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.2e-37 Score=358.16 Aligned_cols=207 Identities=27% Similarity=0.332 Sum_probs=179.7
Q ss_pred CCHHHHHHHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-----CCceee
Q 001253 799 FTFKDLVVATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-----HRNIVK 872 (1114)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~ 872 (1114)
+++++.....++|++.++||+|+||+||+|++. +++.||||++... ....+.+..|+.+++.++ ||||++
T Consensus 25 ~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~e~~~l~~l~~~~~~h~~iv~ 100 (360)
T 3llt_A 25 FSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI----KKYTRSAKIEADILKKIQNDDINNNNIVK 100 (360)
T ss_dssp CCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC----HHHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred eeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc----hhhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence 344444455689999999999999999999985 7899999999642 233456778999998886 999999
Q ss_pred EEeEEEecCceEEEEecCCCCCHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC----
Q 001253 873 LYGFCYHQGSNLLMYEYMARGSLGELLHGAS-STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD---- 947 (1114)
Q Consensus 873 l~~~~~~~~~~~lv~E~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~---- 947 (1114)
+++++...+..++||||+ +++|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+|||++.
T Consensus 101 ~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~ 176 (360)
T 3llt_A 101 YHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFE 176 (360)
T ss_dssp EEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCC
T ss_pred ccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEcccccc
Confidence 999999999999999999 889999997543 4689999999999999999999999 9999999999999975
Q ss_pred ---------------------CCCeEEeeccCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHH
Q 001253 948 ---------------------KFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLEL 1006 (1114)
Q Consensus 948 ---------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el 1006 (1114)
++.+||+|||+|+.... ......||+.|+|||++.+..++.++||||+||++|||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el 252 (360)
T 3llt_A 177 KSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSD----YHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAEL 252 (360)
T ss_dssp EEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTS----CCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHH
T ss_pred ccccchhcccccccccccccCCCCEEEEeccCceecCC----CCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHH
Confidence 78999999999987432 22345799999999999999999999999999999999
Q ss_pred HhCCCCCCCCC
Q 001253 1007 LTGRAPVQPLD 1017 (1114)
Q Consensus 1007 ~tg~~p~~~~~ 1017 (1114)
++|+.||....
T Consensus 253 l~g~~pf~~~~ 263 (360)
T 3llt_A 253 YTGSLLFRTHE 263 (360)
T ss_dssp HHSSCSCCCSS
T ss_pred HHCCCCCCCCc
Confidence 99999997543
No 180
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=1.2e-37 Score=353.49 Aligned_cols=251 Identities=23% Similarity=0.294 Sum_probs=202.1
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 885 (1114)
.++|++.+.||+|+||+||+|+.+ +|+.||||++...... ..+|++++.++ +||||+++++++.+++..|+
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~-------~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~l 93 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD-------PTEEIEILLRYGQHPNIITLKDVYDDGKYVYV 93 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC-------CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEE
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC-------hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEE
Confidence 467999999999999999999986 6899999999765432 24577777777 79999999999999999999
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCC----CCeEEeeccCcee
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDK----FEAHVGDFGLAKV 961 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~----~~~kl~DfG~a~~ 961 (1114)
||||+++|+|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+||++.++ +.+||+|||+++.
T Consensus 94 v~E~~~gg~L~~~i~~-~~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~ 169 (342)
T 2qr7_A 94 VTELMKGGELLDKILR-QKFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQ 169 (342)
T ss_dssp EECCCCSCBHHHHHHT-CTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEE
T ss_pred EEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCccc
Confidence 9999999999999974 35799999999999999999999999 99999999999998543 3599999999987
Q ss_pred cCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccc
Q 001253 962 IDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLD 1041 (1114)
Q Consensus 962 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1114)
..... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ....+....... +.+
T Consensus 170 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-~~~~~~~~~i~~-~~~------ 240 (342)
T 2qr7_A 170 LRAEN-GLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPD-DTPEEILARIGS-GKF------ 240 (342)
T ss_dssp CBCTT-CCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTT-SCHHHHHHHHHH-CCC------
T ss_pred CcCCC-CceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCc-CCHHHHHHHHcc-CCc------
Confidence 64332 233456799999999999988899999999999999999999999975332 233333332222 111
Q ss_pred ccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1042 ARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1042 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.............+.+++.+||+.||++|||+.|+++
T Consensus 241 ---~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~ 277 (342)
T 2qr7_A 241 ---SLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR 277 (342)
T ss_dssp ---CCCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred ---ccCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 1111111223346889999999999999999999875
No 181
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=1.4e-37 Score=343.53 Aligned_cols=250 Identities=23% Similarity=0.290 Sum_probs=204.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.++||+|+||+||+|+++ ++..||+|++....... .+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~---~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVED---VDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLV 84 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSC---HHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccch---HHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEE
Confidence 367999999999999999999986 57899999997654433 56788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEE---CCCCCeEEeeccCceecC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILL---DDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~DfG~a~~~~ 963 (1114)
|||+++++|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||++....
T Consensus 85 ~e~~~~~~L~~~~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~ 160 (277)
T 3f3z_A 85 MELCTGGELFERVVH-KRVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK 160 (277)
T ss_dssp EECCCSCBHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred EeccCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceecc
Confidence 999999999998874 34689999999999999999999999 99999999999999 788999999999998764
Q ss_pred CCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDAR 1043 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
. ........||+.|+|||++.+. ++.++||||+|+++|||++|+.||..... .......... ..
T Consensus 161 ~--~~~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~----~~~~~~~~~~-~~-------- 224 (277)
T 3f3z_A 161 P--GKMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTD----SEVMLKIREG-TF-------- 224 (277)
T ss_dssp T--TSCBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHC-CC--------
T ss_pred C--ccchhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCH----HHHHHHHHhC-CC--------
Confidence 2 2334456799999999988664 89999999999999999999999975332 2222221111 10
Q ss_pred ccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1044 LNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1044 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.............+.+++.+||+.||++|||+.|+++
T Consensus 225 -~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 225 -TFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp -CCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred -CCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0000000112346889999999999999999999975
No 182
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=2.6e-37 Score=348.37 Aligned_cols=262 Identities=26% Similarity=0.388 Sum_probs=208.7
Q ss_pred CCcCCceecccCCeEEEEEEeC-----CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEec--Cc
Q 001253 810 NFDERFVIGRGACGTVYRAVLR-----TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQ--GS 882 (1114)
Q Consensus 810 ~~~~~~~lG~G~~g~Vy~~~~~-----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~ 882 (1114)
.|++.++||+|+||+||+|.++ +++.||||++.... .....+.+.+|+.++++++||||+++++++.+. ..
T Consensus 32 ~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (318)
T 3lxp_A 32 YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADA--GPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAAS 109 (318)
T ss_dssp GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTE
T ss_pred HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEecccc--ChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCce
Confidence 3499999999999999998753 68899999997553 234466789999999999999999999999874 56
Q ss_pred eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 883 NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
.++||||+++|+|.+++... .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 110 ~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~ 184 (318)
T 3lxp_A 110 LQLVMEYVPLGSLRDYLPRH--SIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAV 184 (318)
T ss_dssp EEEEECCCTTCBHHHHGGGS--CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred EEEEEecccCCcHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCccccccc
Confidence 79999999999999999743 489999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCC--CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCC---------C-CHHHHHHHHH
Q 001253 963 DMPQS--KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQG---------G-DLVTWVRNFI 1030 (1114)
Q Consensus 963 ~~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~---------~-~~~~~~~~~~ 1030 (1114)
..... .......+|+.|+|||++.+..++.++||||+|+++|||++|+.||...... + .....+...+
T Consensus 185 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (318)
T 3lxp_A 185 PEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELL 264 (318)
T ss_dssp CTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHH
Confidence 53322 1223456888999999999989999999999999999999999998632110 0 0000111111
Q ss_pred hcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1031 RNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
.... ....+......+.+++.+||+.||++|||++|+++.|+++..+.
T Consensus 265 ~~~~------------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~ 312 (318)
T 3lxp_A 265 ERGE------------RLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKY 312 (318)
T ss_dssp HTTC------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred hccc------------CCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhh
Confidence 1110 01112223357889999999999999999999999999986543
No 183
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=1.9e-37 Score=359.90 Aligned_cols=251 Identities=23% Similarity=0.269 Sum_probs=192.0
Q ss_pred cCCcCC-ceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHH-hcCCCCceeeEEeEEEe----cC
Q 001253 809 DNFDER-FVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTL-GKIRHRNIVKLYGFCYH----QG 881 (1114)
Q Consensus 809 ~~~~~~-~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~ 881 (1114)
++|.+. ++||+|+||+||+|+++ +|+.||||++.. ...+.+|+.++ +..+||||+++++++.. ..
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~--------~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~ 132 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD--------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRK 132 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC--------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc--------chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCc
Confidence 456665 68999999999999976 789999999853 23466788776 44589999999999876 56
Q ss_pred ceEEEEecCCCCCHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC---CCCeEEeecc
Q 001253 882 SNLLMYEYMARGSLGELLHGAS-STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD---KFEAHVGDFG 957 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~DfG 957 (1114)
..|+||||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+|||++. ++.+||+|||
T Consensus 133 ~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG 209 (400)
T 1nxk_A 133 CLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFG 209 (400)
T ss_dssp EEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCT
T ss_pred EEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEecc
Confidence 7899999999999999998543 4699999999999999999999998 9999999999999997 7899999999
Q ss_pred CceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccc
Q 001253 958 LAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVS 1037 (1114)
Q Consensus 958 ~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1114)
+++.... .......+||+.|+|||++.+..++.++|||||||++|||++|+.||.............. .+..+.+
T Consensus 210 ~a~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~-~i~~~~~-- 284 (400)
T 1nxk_A 210 FAKETTS--HNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKT-RIRMGQY-- 284 (400)
T ss_dssp TCEECC-------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHH-HHHHTCC--
T ss_pred cccccCC--CCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHH-HHHcCcc--
Confidence 9987542 2233456899999999999999999999999999999999999999976543221111111 1111111
Q ss_pred ccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 001253 1038 GMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLM 1082 (1114)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 1082 (1114)
.............+.+++.+||+.||++|||+.|+++-
T Consensus 285 -------~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 285 -------EFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp -------CCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred -------cCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 00011111223468899999999999999999999873
No 184
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.1e-37 Score=356.24 Aligned_cols=260 Identities=24% Similarity=0.271 Sum_probs=203.6
Q ss_pred HHHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCC--CChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC
Q 001253 805 VVATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNRE--GNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG 881 (1114)
Q Consensus 805 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~--~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 881 (1114)
....++|++.+.||+|+||+||+|+++ +++.||+|++..... ......+.+.+|+.++++++||||+++++++.+.+
T Consensus 22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~ 101 (345)
T 3hko_A 22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ 101 (345)
T ss_dssp HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC
Confidence 345688999999999999999999975 788999999975421 12234567899999999999999999999999999
Q ss_pred ceEEEEecCCCCCHHHHhccC---------------------------------------CCCCCHHHHHHHHHHHHHHH
Q 001253 882 SNLLMYEYMARGSLGELLHGA---------------------------------------SSTLDWQTRFMIALGAAEGL 922 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~---------------------------------------~~~l~~~~~~~i~~~i~~~L 922 (1114)
..++||||+++|+|.+++... ...+++..+..++.|+++||
T Consensus 102 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l 181 (345)
T 3hko_A 102 YICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSAL 181 (345)
T ss_dssp EEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHH
Confidence 999999999999999998521 11235777888999999999
Q ss_pred HHHHhCCCCCeEecCCCCCCeEECCCC--CeEEeeccCceecCCCCC---CccccccccccccCcccccc--CCCCcccc
Q 001253 923 SYLHHDCKPRIFHRDIKSNNILLDDKF--EAHVGDFGLAKVIDMPQS---KSMSAIAGSYGYIAPEYAYT--MKVTEKCD 995 (1114)
Q Consensus 923 ~~LH~~~~~~ivH~Dlk~~Nill~~~~--~~kl~DfG~a~~~~~~~~---~~~~~~~g~~~y~aPE~~~~--~~~~~~~D 995 (1114)
+|||+. +|+||||||+||+++.++ .+||+|||+++.+..... .......||+.|+|||++.+ ..++.++|
T Consensus 182 ~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~D 258 (345)
T 3hko_A 182 HYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCD 258 (345)
T ss_dssp HHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHH
T ss_pred HHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHH
Confidence 999999 999999999999998776 899999999987543221 22345679999999999875 67889999
Q ss_pred hHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCC
Q 001253 996 IYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPT 1075 (1114)
Q Consensus 996 vwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs 1075 (1114)
|||+||++|||++|+.||..... .+........... ............+.+++.+||+.||.+||+
T Consensus 259 iwslG~il~el~~g~~pf~~~~~----~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps 324 (345)
T 3hko_A 259 AWSAGVLLHLLLMGAVPFPGVND----ADTISQVLNKKLC----------FENPNYNVLSPLARDLLSNLLNRNVDERFD 324 (345)
T ss_dssp HHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHCCCC----------TTSGGGGGSCHHHHHHHHHHSCSCTTTSCC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCh----HHHHHHHHhcccc----------cCCcccccCCHHHHHHHHHHcCCChhHCCC
Confidence 99999999999999999975432 2233332222111 111111122346889999999999999999
Q ss_pred HHHHHH
Q 001253 1076 MREVVL 1081 (1114)
Q Consensus 1076 ~~evl~ 1081 (1114)
+.|+++
T Consensus 325 ~~~~l~ 330 (345)
T 3hko_A 325 AMRALQ 330 (345)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999986
No 185
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=354.41 Aligned_cols=272 Identities=24% Similarity=0.327 Sum_probs=202.4
Q ss_pred hcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHH--HHHHhcCCCCceeeEEeEEEe-----c
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAE--ILTLGKIRHRNIVKLYGFCYH-----Q 880 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E--~~~l~~l~h~niv~l~~~~~~-----~ 880 (1114)
.++|++.+.||+|+||+||+|++ +++.||||++.... ...+..| +..+..++||||+++++++.. .
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~------~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 84 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN------RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGR 84 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG------HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSC
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc------hhhHHHHHHHHHHHhccCcchhhheecccccccCCC
Confidence 36899999999999999999987 48999999996432 2233334 444556899999999986643 2
Q ss_pred CceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC------CCCeEecCCCCCCeEECCCCCeEEe
Q 001253 881 GSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDC------KPRIFHRDIKSNNILLDDKFEAHVG 954 (1114)
Q Consensus 881 ~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------~~~ivH~Dlk~~Nill~~~~~~kl~ 954 (1114)
...++||||+++|+|.++++.. ..++..+..++.|+++||+|||+.+ .++|+||||||+||+++.++.+||+
T Consensus 85 ~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~ 162 (336)
T 3g2f_A 85 MEYLLVMEYYPNGSLXKYLSLH--TSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVIS 162 (336)
T ss_dssp EEEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEEC
T ss_pred ceEEEEEecCCCCcHHHHHhhc--ccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEe
Confidence 2568999999999999999743 4589999999999999999999862 2389999999999999999999999
Q ss_pred eccCceecCCCC-------CCccccccccccccCcccccc-------CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCC
Q 001253 955 DFGLAKVIDMPQ-------SKSMSAIAGSYGYIAPEYAYT-------MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGG 1020 (1114)
Q Consensus 955 DfG~a~~~~~~~-------~~~~~~~~g~~~y~aPE~~~~-------~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~ 1020 (1114)
|||+++.+.... ........||+.|+|||++.+ ..++.++|||||||++|||++|..||.......
T Consensus 163 DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~ 242 (336)
T 3g2f_A 163 DFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVP 242 (336)
T ss_dssp CCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCC
T ss_pred eccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchh
Confidence 999998764321 122234579999999999876 456779999999999999999987765443322
Q ss_pred CHHH-------------HHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhh
Q 001253 1021 DLVT-------------WVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESN 1087 (1114)
Q Consensus 1021 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~ 1087 (1114)
.... .......... ..+.+.............+.+++.+||+.||++|||++|+++.|+++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll 317 (336)
T 3g2f_A 243 EYQMAFQTEVGNHPTFEDMQVLVSREK-----QRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELM 317 (336)
T ss_dssp CCCCTTHHHHCSSCCHHHHHHHHTTSC-----CCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCCchHHHHHhhhcccc-----cCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHH
Confidence 2111 1111111111 011111112223345667999999999999999999999999999997
Q ss_pred ccCCCc
Q 001253 1088 RRQGHF 1093 (1114)
Q Consensus 1088 ~~~~~~ 1093 (1114)
....+-
T Consensus 318 ~~~~~~ 323 (336)
T 3g2f_A 318 MIWERN 323 (336)
T ss_dssp HCCCC-
T ss_pred HHHHhc
Confidence 655443
No 186
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=1.8e-37 Score=343.79 Aligned_cols=263 Identities=24% Similarity=0.317 Sum_probs=210.3
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCC---hhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGN---NNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN 883 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 883 (1114)
.++|++.+.||+|+||+||+|+.+ +|+.||+|+++...... ....+.+.+|+.++++++||||+++++++.+++..
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 83 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV 83 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence 367999999999999999999987 78999999997654322 12356789999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC----CeEEeeccCc
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF----EAHVGDFGLA 959 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~DfG~a 959 (1114)
++||||+++++|.+++.. ...+++..+..++.|+++||+|||+. +++||||||+||+++.++ .+||+|||.+
T Consensus 84 ~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~ 159 (283)
T 3bhy_A 84 VLILELVSGGELFDFLAE-KESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIA 159 (283)
T ss_dssp EEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCTTC
T ss_pred EEEEeecCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEecccc
Confidence 999999999999999974 34689999999999999999999999 999999999999999877 8999999999
Q ss_pred eecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccc
Q 001253 960 KVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGM 1039 (1114)
Q Consensus 960 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1114)
...... .......|++.|+|||++.+..++.++||||+|+++|+|++|+.||.... ........... ..
T Consensus 160 ~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----~~~~~~~~~~~-~~---- 228 (283)
T 3bhy_A 160 HKIEAG--NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGET----KQETLTNISAV-NY---- 228 (283)
T ss_dssp EECC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHTT-CC----
T ss_pred eeccCC--CcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcc----hHHHHHHhHhc-cc----
Confidence 876422 22344579999999999999999999999999999999999999997533 22222221111 10
Q ss_pred ccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHhhhccC
Q 001253 1040 LDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL--MLSESNRRQ 1090 (1114)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~i~~~~ 1090 (1114)
.............+.+++.+||+.||++|||+.|+++ .+++++.+.
T Consensus 229 -----~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~~ 276 (283)
T 3bhy_A 229 -----DFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRRN 276 (283)
T ss_dssp -----CCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHHCC
T ss_pred -----CCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHHHh
Confidence 0000011112346889999999999999999999997 567765554
No 187
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=2.7e-37 Score=361.24 Aligned_cols=255 Identities=25% Similarity=0.355 Sum_probs=196.4
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCC-----ChhhHHHHHHHHHHHhcCCCCceeeEEeEEEec
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREG-----NNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQ 880 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 880 (1114)
..++|.+.++||+|+||+||+|+++ +++.||||++...... .......+.+|+.++++++||||+++++++. .
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-~ 211 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-A 211 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-S
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-c
Confidence 4578999999999999999999976 6899999999764321 1112234788999999999999999999985 4
Q ss_pred CceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC---CeEEeecc
Q 001253 881 GSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF---EAHVGDFG 957 (1114)
Q Consensus 881 ~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~kl~DfG 957 (1114)
+..|+||||+++|+|.+++.. ...+++..+..++.|+++||+|||+. +|+||||||+|||++.++ .+||+|||
T Consensus 212 ~~~~lv~e~~~~g~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~DFG 287 (419)
T 3i6u_A 212 EDYYIVLELMEGGELFDKVVG-NKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFG 287 (419)
T ss_dssp SEEEEEEECCTTCBGGGGTSS-SCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEECCSS
T ss_pred CceEEEEEcCCCCcHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEeecc
Confidence 557999999999999999874 45799999999999999999999999 999999999999997544 59999999
Q ss_pred CceecCCCCCCccccccccccccCcccccc---CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCC
Q 001253 958 LAKVIDMPQSKSMSAIAGSYGYIAPEYAYT---MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNS 1034 (1114)
Q Consensus 958 ~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~---~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~ 1034 (1114)
+|+... ........+||+.|+|||++.+ ..++.++||||+||++|||++|+.||............+.. ..
T Consensus 288 ~a~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~----~~ 361 (419)
T 3i6u_A 288 HSKILG--ETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITS----GK 361 (419)
T ss_dssp TTTSCC-------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHT----TC
T ss_pred cceecC--CCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhc----CC
Confidence 998754 2233445689999999999853 56888999999999999999999999865554444333322 11
Q ss_pred cccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1035 LVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
+ .............+.+++.+||+.||++|||++|+++
T Consensus 362 ~---------~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 362 Y---------NFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp C---------CCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred C---------CCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 1 0000111122346889999999999999999999886
No 188
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=6.3e-37 Score=339.53 Aligned_cols=250 Identities=26% Similarity=0.330 Sum_probs=198.5
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.++||+|+||+||+|+.+ +++.||+|++....... ..+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~--~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 99 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQV--PMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVM 99 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCS--CHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccch--hHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEE
Confidence 67999999999999999999976 68999999997665332 2567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhcc---CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEE---CCCCCeEEeeccCcee
Q 001253 888 EYMARGSLGELLHG---ASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILL---DDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 888 E~~~~gsL~~~l~~---~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~DfG~a~~ 961 (1114)
||+++|+|.+++.. ....+++..+..++.|+++||+|||+. +|+||||||+||++ +.++.+||+|||+++.
T Consensus 100 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~ 176 (285)
T 3is5_A 100 ETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAEL 176 (285)
T ss_dssp CCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC
T ss_pred EeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeeccee
Confidence 99999999998853 236799999999999999999999999 99999999999999 4567899999999986
Q ss_pred cCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccc
Q 001253 962 IDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLD 1041 (1114)
Q Consensus 962 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1114)
... ........|++.|+|||++. ..++.++||||+|+++|||++|+.||.... ..............
T Consensus 177 ~~~--~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~----~~~~~~~~~~~~~~------ 243 (285)
T 3is5_A 177 FKS--DEHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTS----LEEVQQKATYKEPN------ 243 (285)
T ss_dssp ------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHCCCC------
T ss_pred cCC--cccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCC----HHHHHhhhccCCcc------
Confidence 542 22334567999999999875 568999999999999999999999997433 22222221111110
Q ss_pred ccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1042 ARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1042 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
...... .....+.+++.+||+.||++|||++|+++
T Consensus 244 --~~~~~~---~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 244 --YAVECR---PLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp --CCC--C---CCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred --cccccC---cCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000000 01246789999999999999999999975
No 189
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=9.6e-38 Score=353.63 Aligned_cols=278 Identities=22% Similarity=0.330 Sum_probs=200.6
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceE
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 884 (1114)
...++|++.++||+|+||+||+|++. +++.||||++...... ....+.+.+|+.++++++||||+++++++.+++..+
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEE-EGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH 109 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC---------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccc-cccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence 34578999999999999999999976 7899999999755432 223456778999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEE-----CCCCCeEEeeccCc
Q 001253 885 LMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILL-----DDKFEAHVGDFGLA 959 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill-----~~~~~~kl~DfG~a 959 (1114)
+||||+++ +|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||++ ++++.+||+|||++
T Consensus 110 lv~e~~~~-~L~~~~~~~-~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a 184 (329)
T 3gbz_A 110 LIFEYAEN-DLKKYMDKN-PDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLA 184 (329)
T ss_dssp EEEECCSE-EHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTHH
T ss_pred EEEecCCC-CHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCCc
Confidence 99999985 999999744 4689999999999999999999999 99999999999999 45556999999999
Q ss_pred eecCCCCCCccccccccccccCccccccC-CCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcc--
Q 001253 960 KVIDMPQSKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLV-- 1036 (1114)
Q Consensus 960 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~-- 1036 (1114)
+..... ........||+.|+|||++.+. .++.++||||+||++|||++|+.||............... .......
T Consensus 185 ~~~~~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~-~~~~~~~~~ 262 (329)
T 3gbz_A 185 RAFGIP-IRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEV-LGLPDDTTW 262 (329)
T ss_dssp HHHC------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHH-HCCCCTTTS
T ss_pred cccCCc-ccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHH-hCCCchhhh
Confidence 876432 2233445789999999999874 4899999999999999999999999754322212111111 1110000
Q ss_pred ccc-----ccccccCCCcc------cHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCcccccCCCC
Q 001253 1037 SGM-----LDARLNLQDEK------TVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFEFSPMDHD 1101 (1114)
Q Consensus 1037 ~~~-----~~~~~~~~~~~------~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~~~~~~~~ 1101 (1114)
... +.......... .......+.+++.+||+.||++|||++|+++ +.++...+|+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~----------hp~f~~~~~~ 328 (329)
T 3gbz_A 263 PGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE----------HPYFSHNDFD 328 (329)
T ss_dssp TTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT----------SGGGSSSCSC
T ss_pred hhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC----------CcccCCCCCC
Confidence 000 00000000000 0112356889999999999999999999874 4566666665
No 190
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=1.5e-37 Score=352.16 Aligned_cols=264 Identities=26% Similarity=0.446 Sum_probs=209.8
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcE--EEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHT--VAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~--vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 884 (1114)
++|++.+.||+|+||+||+|+++ ++.. ||+|++...... ...+.+.+|+.+++++ +||||+++++++.+.+..+
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~--~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~ 102 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASK--DDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLY 102 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC--------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccch--HHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceE
Confidence 67999999999999999999975 5664 499998754322 2345688999999999 8999999999999999999
Q ss_pred EEEecCCCCCHHHHhccCC---------------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC
Q 001253 885 LMYEYMARGSLGELLHGAS---------------STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF 949 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~---------------~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~ 949 (1114)
+||||+++|+|.+++.... ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~ 179 (327)
T 1fvr_A 103 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENY 179 (327)
T ss_dssp EEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGG
T ss_pred EEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCC
Confidence 9999999999999997543 4789999999999999999999999 999999999999999999
Q ss_pred CeEEeeccCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHH
Q 001253 950 EAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRN 1028 (1114)
Q Consensus 950 ~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~ 1028 (1114)
.+||+|||+++.... ........+++.|+|||++.+..++.++||||+|+++|||++ |+.||.... .......
T Consensus 180 ~~kL~Dfg~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~----~~~~~~~ 253 (327)
T 1fvr_A 180 VAKIADFGLSRGQEV--YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT----CAELYEK 253 (327)
T ss_dssp CEEECCTTCEESSCE--ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC----HHHHHHH
T ss_pred eEEEcccCcCccccc--cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc----HHHHHHH
Confidence 999999999974321 122233457889999999998889999999999999999998 999996433 2222221
Q ss_pred HHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCcccc
Q 001253 1029 FIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFEFS 1096 (1114)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~~~ 1096 (1114)
+..+. . ...+......+.+++.+||+.||.+|||++|+++.|+++..........
T Consensus 254 -~~~~~--------~----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~~~~ 308 (327)
T 1fvr_A 254 -LPQGY--------R----LEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKTYVNT 308 (327)
T ss_dssp -GGGTC--------C----CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSSCSBCC
T ss_pred -hhcCC--------C----CCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhcCcccc
Confidence 11110 0 0111122346889999999999999999999999999997766555433
No 191
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=8e-38 Score=357.80 Aligned_cols=256 Identities=23% Similarity=0.261 Sum_probs=207.6
Q ss_pred cCCcCCceecccCCeEEEEEEe----CCCcEEEEEEecccCCC-ChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCc
Q 001253 809 DNFDERFVIGRGACGTVYRAVL----RTGHTVAVKKLASNREG-NNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGS 882 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~----~~g~~vavK~~~~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 882 (1114)
++|++.++||+|+||+||+|+. .+|+.||||+++..... .....+.+.+|+.+++++ +||||+++++++...+.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 6799999999999999999997 37899999998754311 111234466799999999 69999999999999999
Q ss_pred eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 883 NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
.++||||+++|+|.+++... ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++.+
T Consensus 134 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~ 209 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQR-ERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLSKEF 209 (355)
T ss_dssp EEEEECCCCSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred EEEEeecCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCCeec
Confidence 99999999999999999743 4689999999999999999999998 9999999999999999999999999999876
Q ss_pred CCCCCCccccccccccccCcccccc--CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 963 DMPQSKSMSAIAGSYGYIAPEYAYT--MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 963 ~~~~~~~~~~~~g~~~y~aPE~~~~--~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
...........+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.............+.......
T Consensus 210 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~------ 283 (355)
T 1vzo_A 210 VADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEP------ 283 (355)
T ss_dssp CGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCC------
T ss_pred ccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCC------
Confidence 4333334445689999999999985 44788999999999999999999999866555555554444333211
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHHH
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRP-----TMREVVLM 1082 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-----s~~evl~~ 1082 (1114)
..+......+.+++.+||+.||++|| +++|+++.
T Consensus 284 --------~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 284 --------PYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp --------CCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred --------CCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 11112234678899999999999999 99998764
No 192
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=4.3e-38 Score=350.34 Aligned_cols=266 Identities=24% Similarity=0.357 Sum_probs=201.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeC--CCc--EEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR--TGH--TVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN 883 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~--~g~--~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 883 (1114)
.++|++.++||+|+||+||+|+++ +++ .||||+++..........+.+.+|+.++++++||||+++++++..+. .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 468999999999999999999863 333 68999998765544555678999999999999999999999998754 8
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
++||||+++++|.+++......+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||+++...
T Consensus 96 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~ 172 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRALP 172 (291)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred eeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEcccccccccc
Confidence 999999999999999986666799999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCC--ccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 964 MPQSK--SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 964 ~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
..... ......+++.|+|||++.+..++.++||||+|+++|||++ |+.||.... ..............
T Consensus 173 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~----~~~~~~~~~~~~~~----- 243 (291)
T 1u46_A 173 QNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLN----GSQILHKIDKEGER----- 243 (291)
T ss_dssp C-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCC----HHHHHHHHHTSCCC-----
T ss_pred ccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCC----HHHHHHHHHccCCC-----
Confidence 33221 1233467889999999998889999999999999999999 999997543 22233322222110
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCc
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHF 1093 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~ 1093 (1114)
...+......+.+++.+||+.||++|||+.++++.|+++.......
T Consensus 244 -------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~ 289 (291)
T 1u46_A 244 -------LPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTDMRA 289 (291)
T ss_dssp -------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC------
T ss_pred -------CCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCccchhh
Confidence 0111122346889999999999999999999999999987655443
No 193
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=1.8e-37 Score=345.84 Aligned_cols=251 Identities=22% Similarity=0.327 Sum_probs=209.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|+++ +++.||+|++...........+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 367999999999999999999987 6889999999876655555667889999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++++|.+++.. ...+++.++..++.|+++||+|||+. +++||||||+||+++.++.+||+|||.+.......
T Consensus 94 ~e~~~~~~L~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 169 (294)
T 2rku_A 94 LELCRRRSLLELHKR-RKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 169 (294)
T ss_dssp EECCTTCBHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecccCc
Confidence 999999999999874 34789999999999999999999999 99999999999999999999999999998764222
Q ss_pred CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
.......|++.|+|||.+.+..++.++||||+|+++|||++|+.||.... ..+....... ... .
T Consensus 170 -~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~----~~~~~~~~~~-~~~---------~- 233 (294)
T 2rku_A 170 -ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC----LKETYLRIKK-NEY---------S- 233 (294)
T ss_dssp -CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHT-TCC---------C-
T ss_pred -cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHhh-ccC---------C-
Confidence 22344679999999999999899999999999999999999999996433 2222222111 110 0
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.+......+.+++.+||+.||++|||++|+++
T Consensus 234 ---~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 265 (294)
T 2rku_A 234 ---IPKHINPVAASLIQKMLQTDPTARPTINELLN 265 (294)
T ss_dssp ---CCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ---CccccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence 01112246788999999999999999999986
No 194
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=3.2e-37 Score=349.05 Aligned_cols=264 Identities=23% Similarity=0.311 Sum_probs=208.7
Q ss_pred CCCHHHHHHHhcCCcCC-ceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-CCceeeEE
Q 001253 798 GFTFKDLVVATDNFDER-FVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-HRNIVKLY 874 (1114)
Q Consensus 798 ~~~~~~~~~~~~~~~~~-~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~ 874 (1114)
...++......++|.+. +.||+|+||+||+|+.+ +|+.||+|++....... .....+.+|+.+++.++ ||||++++
T Consensus 17 n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~~~~~iv~~~ 95 (327)
T 3lm5_A 17 NLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQ-DCRAEILHEIAVLELAKSCPRVINLH 95 (327)
T ss_dssp CCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTE-ECHHHHHHHHHHHHHTTTCTTBCCEE
T ss_pred hhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcch-HHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 34455555666788887 88999999999999976 68999999998654432 33567889999999994 69999999
Q ss_pred eEEEecCceEEEEecCCCCCHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC---CCC
Q 001253 875 GFCYHQGSNLLMYEYMARGSLGELLHGA-SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD---KFE 950 (1114)
Q Consensus 875 ~~~~~~~~~~lv~E~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~---~~~ 950 (1114)
+++.+.+..++||||+++|+|.+++... ...+++..+..++.|++.||+|||+. +|+||||||+||+++. ++.
T Consensus 96 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~ 172 (327)
T 3lm5_A 96 EVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGD 172 (327)
T ss_dssp EEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCC
T ss_pred EEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCc
Confidence 9999999999999999999999998643 45799999999999999999999999 9999999999999998 789
Q ss_pred eEEeeccCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHH
Q 001253 951 AHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFI 1030 (1114)
Q Consensus 951 ~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~ 1030 (1114)
+||+|||+++..... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||..... ........
T Consensus 173 ~kL~Dfg~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~----~~~~~~i~ 246 (327)
T 3lm5_A 173 IKIVDFGMSRKIGHA--CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDN----QETYLNIS 246 (327)
T ss_dssp EEECCGGGCEEC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHH
T ss_pred EEEeeCccccccCCc--cccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc----hHHHHHHH
Confidence 999999999876422 233456799999999999999999999999999999999999999965332 22222211
Q ss_pred hcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1031 RNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
... ..............+.+++.+||+.||++|||++|+++
T Consensus 247 ~~~----------~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 247 QVN----------VDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp HTC----------CCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hcc----------cccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 110 00011111223346889999999999999999999874
No 195
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=1.1e-37 Score=350.78 Aligned_cols=267 Identities=24% Similarity=0.392 Sum_probs=203.6
Q ss_pred HHHHHHhcCCcCCceecccCCeEEEEEEeC----CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEE
Q 001253 802 KDLVVATDNFDERFVIGRGACGTVYRAVLR----TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFC 877 (1114)
Q Consensus 802 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~ 877 (1114)
+++.+..++|++.+.||+|+||+||+|++. ++..||+|++...... ....+.+.+|+.++++++||||+++++++
T Consensus 27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~ 105 (313)
T 3brb_A 27 EDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSS-QREIEEFLSEAACMKDFSHPNVIRLLGVC 105 (313)
T ss_dssp TTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCC-HHHHHHHHHHHHHHHTCCCTTBCCCCEEE
T ss_pred HhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccc-hhHHHHHHHHHHHHhcCCCCCeeeeeEEE
Confidence 344456688999999999999999999864 3458999998765432 33456788999999999999999999999
Q ss_pred EecC-----ceEEEEecCCCCCHHHHhc-----cCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC
Q 001253 878 YHQG-----SNLLMYEYMARGSLGELLH-----GASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD 947 (1114)
Q Consensus 878 ~~~~-----~~~lv~E~~~~gsL~~~l~-----~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~ 947 (1114)
.+.+ ..++||||+++|+|.+++. .....+++..+..++.|+++||+|||+. +|+||||||+||+++.
T Consensus 106 ~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~ 182 (313)
T 3brb_A 106 IEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRD 182 (313)
T ss_dssp EC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECT
T ss_pred eeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcC
Confidence 8755 3499999999999999984 2345799999999999999999999998 9999999999999999
Q ss_pred CCCeEEeeccCceecCCCCC-CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHH
Q 001253 948 KFEAHVGDFGLAKVIDMPQS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTW 1025 (1114)
Q Consensus 948 ~~~~kl~DfG~a~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~ 1025 (1114)
++.+||+|||+++....... .......+++.|+|||.+.+..++.++||||||+++|||++ |..||...... ....
T Consensus 183 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~-~~~~- 260 (313)
T 3brb_A 183 DMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH-EMYD- 260 (313)
T ss_dssp TSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG-GHHH-
T ss_pred CCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH-HHHH-
Confidence 99999999999986543222 22234467889999999999999999999999999999999 88888654332 1111
Q ss_pred HHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1026 VRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1026 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
..... .. ...+......+.+++.+||+.||++|||+.++++.|+++..+
T Consensus 261 --~~~~~-~~------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~ 309 (313)
T 3brb_A 261 --YLLHG-HR------------LKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLES 309 (313)
T ss_dssp --HHHTT-CC------------CCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --HHHcC-CC------------CCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 11111 00 011122234688999999999999999999999999998664
No 196
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=4.1e-37 Score=339.56 Aligned_cols=253 Identities=26% Similarity=0.375 Sum_probs=206.3
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|+.+ +++.||||++...... ...+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 83 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAV--DCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLF 83 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCT--THHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccch--hhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEE
Confidence 367999999999999999999986 7899999999755432 2356788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++++|.+++.. ...+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||.+.......
T Consensus 84 ~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 159 (276)
T 2yex_A 84 LEYCSGGELFDRIEP-DIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN 159 (276)
T ss_dssp EECCTTEEGGGGSBT-TTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred EEecCCCcHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCCc
Confidence 999999999999974 45789999999999999999999998 99999999999999999999999999998653222
Q ss_pred -CCccccccccccccCccccccCCC-CcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccc
Q 001253 967 -SKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARL 1044 (1114)
Q Consensus 967 -~~~~~~~~g~~~y~aPE~~~~~~~-~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1114)
........|++.|+|||++.+..+ +.++||||+|+++|||++|+.||.......... ..........
T Consensus 160 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~---~~~~~~~~~~-------- 228 (276)
T 2yex_A 160 RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY---SDWKEKKTYL-------- 228 (276)
T ss_dssp EECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHH---HHHHTTCTTS--------
T ss_pred chhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHH---HHhhhccccc--------
Confidence 122345679999999999987765 779999999999999999999997654332211 1111111100
Q ss_pred cCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1045 NLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1045 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.........+.+++.+||+.||++|||++|+++
T Consensus 229 ----~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 229 ----NPWKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp ----TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ----CchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 001122346788999999999999999999875
No 197
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=7.7e-38 Score=345.76 Aligned_cols=253 Identities=26% Similarity=0.429 Sum_probs=201.2
Q ss_pred hcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEec-CceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQ-GSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|+++ |+.||||++.... ..+.+.+|+.++++++||||+++++++... +..++|
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~-----~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv 93 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA-----TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV 93 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC-------HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEE
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh-----HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEE
Confidence 478999999999999999999986 8899999987543 256788999999999999999999997654 478999
Q ss_pred EecCCCCCHHHHhccCCC-CCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCC
Q 001253 887 YEYMARGSLGELLHGASS-TLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~-~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~ 965 (1114)
|||+++++|.+++..... .+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||++......
T Consensus 94 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~ 170 (278)
T 1byg_A 94 TEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST 170 (278)
T ss_dssp ECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC-------
T ss_pred EecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeecccccccccc
Confidence 999999999999974332 378999999999999999999999 9999999999999999999999999999864322
Q ss_pred CCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccc
Q 001253 966 QSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARL 1044 (1114)
Q Consensus 966 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1114)
.....+++.|+|||.+.+..++.++||||+|+++|||++ |+.||..... .+.. .. +..+. .
T Consensus 171 ----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~-~~~~---~~-~~~~~--------~- 232 (278)
T 1byg_A 171 ----QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL-KDVV---PR-VEKGY--------K- 232 (278)
T ss_dssp ---------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCG-GGHH---HH-HTTTC--------C-
T ss_pred ----ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCH-HHHH---HH-HhcCC--------C-
Confidence 223457889999999999999999999999999999998 9999975432 1111 11 11110 0
Q ss_pred cCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1045 NLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1045 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
...+......+.+++.+||+.||++|||+.|+++.|+++...+
T Consensus 233 ---~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~~ 275 (278)
T 1byg_A 233 ---MDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE 275 (278)
T ss_dssp ---CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred ---CCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence 1111122346889999999999999999999999999987654
No 198
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=2.9e-38 Score=364.96 Aligned_cols=248 Identities=16% Similarity=0.155 Sum_probs=194.7
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHH---HHHhcCCCCceeeEE-------eE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEI---LTLGKIRHRNIVKLY-------GF 876 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~---~~l~~l~h~niv~l~-------~~ 876 (1114)
.++|++.+.||+|+||+||+|+++ +|+.||||++...........+.+.+|+ +.+++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 467999999999999999999974 7999999999876555555567899999 555666899999998 66
Q ss_pred EEecCc-----------------eEEEEecCCCCCHHHHhccCCC------CCCHHHHHHHHHHHHHHHHHHHhCCCCCe
Q 001253 877 CYHQGS-----------------NLLMYEYMARGSLGELLHGASS------TLDWQTRFMIALGAAEGLSYLHHDCKPRI 933 (1114)
Q Consensus 877 ~~~~~~-----------------~~lv~E~~~~gsL~~~l~~~~~------~l~~~~~~~i~~~i~~~L~~LH~~~~~~i 933 (1114)
+.+.+. .|+||||+ +|+|.+++..... .+++..+..++.|+++||+|||+. +|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence 665542 78999999 5799999974321 233688889999999999999999 99
Q ss_pred EecCCCCCCeEECCCCCeEEeeccCceecCCCCCCccccccccccccCccccccC-----------CCCcccchHHHHHH
Q 001253 934 FHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTM-----------KVTEKCDIYSYGVV 1002 (1114)
Q Consensus 934 vH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-----------~~~~~~DvwslGvi 1002 (1114)
+||||||+|||++.++.+||+|||+|+... .......| +.|+|||++.+. .++.++|||||||+
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~----~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~i 302 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDG----ARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLV 302 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETT----CEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecC----CcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHH
Confidence 999999999999999999999999998633 23345567 999999999887 89999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH-
Q 001253 1003 LLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL- 1081 (1114)
Q Consensus 1003 l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~- 1081 (1114)
+|||++|+.||........ ...+... .. .....+.+++.+||+.||++|||+.|+++
T Consensus 303 l~elltg~~Pf~~~~~~~~--------------~~~~~~~----~~----~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h 360 (377)
T 3byv_A 303 IYWIWCADLPITKDAALGG--------------SEWIFRS----CK----NIPQPVRALLEGFLRYPKEDRLLPLQAMET 360 (377)
T ss_dssp HHHHHHSSCCC------CC--------------SGGGGSS----CC----CCCHHHHHHHHHHTCSSGGGCCCHHHHHTS
T ss_pred HHHHHHCCCCCcccccccc--------------hhhhhhh----cc----CCCHHHHHHHHHHcCCCchhCCCHHHHhhC
Confidence 9999999999965432111 0111010 01 11246889999999999999999999985
Q ss_pred -HHHhh
Q 001253 1082 -MLSES 1086 (1114)
Q Consensus 1082 -~L~~i 1086 (1114)
.++++
T Consensus 361 p~f~~~ 366 (377)
T 3byv_A 361 PEYEQL 366 (377)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 44444
No 199
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=9.5e-38 Score=347.46 Aligned_cols=260 Identities=22% Similarity=0.344 Sum_probs=207.2
Q ss_pred HhcCCcCCc-eecccCCeEEEEEEeC---CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc
Q 001253 807 ATDNFDERF-VIGRGACGTVYRAVLR---TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS 882 (1114)
Q Consensus 807 ~~~~~~~~~-~lG~G~~g~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 882 (1114)
..++|++.+ .||+|+||+||+|.+. +++.||||++..... .....+.+.+|+.+++.++||||+++++++ ..+.
T Consensus 14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~ 91 (291)
T 1xbb_A 14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN-DPALKDELLAEANVMQQLDNPYIVRMIGIC-EAES 91 (291)
T ss_dssp CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC------CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSS
T ss_pred cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeeccccc-CHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCC
Confidence 346788888 9999999999999643 568899999976543 233456789999999999999999999999 5677
Q ss_pred eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 883 NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
.++||||+++++|.+++... ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 92 ~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~ 167 (291)
T 1xbb_A 92 WMLVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKAL 167 (291)
T ss_dssp EEEEEECCTTEEHHHHHHHC-TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred cEEEEEeCCCCCHHHHHHhC-cCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcceee
Confidence 89999999999999999853 4689999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCCCc--cccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCccccc
Q 001253 963 DMPQSKS--MSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGM 1039 (1114)
Q Consensus 963 ~~~~~~~--~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1114)
....... .....+++.|+|||.+.+..++.++||||+|+++|||++ |+.||..... .. +...+.....
T Consensus 168 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~----~~-~~~~~~~~~~---- 238 (291)
T 1xbb_A 168 RADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG----SE-VTAMLEKGER---- 238 (291)
T ss_dssp CTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH----HH-HHHHHHTTCC----
T ss_pred ccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCH----HH-HHHHHHcCCC----
Confidence 5333211 222346789999999998889999999999999999999 9999975332 11 2222222111
Q ss_pred ccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1040 LDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
...+......+.+++.+||+.||.+||++.|+++.|+++-..
T Consensus 239 --------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~ 280 (291)
T 1xbb_A 239 --------MGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD 280 (291)
T ss_dssp --------CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred --------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 011122234688999999999999999999999999998543
No 200
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=2.1e-37 Score=351.80 Aligned_cols=251 Identities=22% Similarity=0.333 Sum_probs=210.2
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|.+.+.||+|+||+||+|++. +++.||+|++...........+.+.+|+.+++.++||||+++++++.+.+..|+|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 367999999999999999999986 6889999999876655555677889999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++++|.+++.. ...+++.++..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 120 ~e~~~~~~L~~~~~~-~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 195 (335)
T 2owb_A 120 LELCRRRSLLELHKR-RKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 195 (335)
T ss_dssp ECCCTTCBHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecccCc
Confidence 999999999999874 35789999999999999999999999 99999999999999999999999999998764222
Q ss_pred CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
.......|++.|+|||++.+..++.++||||||+++|||++|+.||.... ........... .. ..
T Consensus 196 -~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~~~~-~~---------~~ 260 (335)
T 2owb_A 196 -ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSC----LKETYLRIKKN-EY---------SI 260 (335)
T ss_dssp -CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHHT-CC---------CC
T ss_pred -ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCC----HHHHHHHHhcC-CC---------CC
Confidence 23345679999999999999999999999999999999999999996432 22222221111 10 00
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
+......+.+++.+||+.||++|||++|+++
T Consensus 261 ----~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 291 (335)
T 2owb_A 261 ----PKHINPVAASLIQKMLQTDPTARPTINELLN 291 (335)
T ss_dssp ----CTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ----CccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 1112235788999999999999999999986
No 201
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=349.27 Aligned_cols=264 Identities=21% Similarity=0.302 Sum_probs=207.5
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe----cC
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH----QG 881 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~ 881 (1114)
..++|++.+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|+.+++.++||||+++++++.. ..
T Consensus 27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (317)
T 2buj_A 27 DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHE---QQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKH 103 (317)
T ss_dssp TTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESS---HHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEE
T ss_pred CCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCC---HHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCc
Confidence 4578999999999999999999974 78999999986532 3346678899999999999999999999873 34
Q ss_pred ceEEEEecCCCCCHHHHhcc---CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccC
Q 001253 882 SNLLMYEYMARGSLGELLHG---ASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGL 958 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~---~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~ 958 (1114)
..++||||+++|+|.+++.. ....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||.
T Consensus 104 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~ 180 (317)
T 2buj_A 104 EAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGS 180 (317)
T ss_dssp EEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSS
T ss_pred eeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCc
Confidence 67899999999999999874 456799999999999999999999999 999999999999999999999999999
Q ss_pred ceecCCCCCC--------ccccccccccccCccccccCC---CCcccchHHHHHHHHHHHhCCCCCCCCCCC-CCHHHHH
Q 001253 959 AKVIDMPQSK--------SMSAIAGSYGYIAPEYAYTMK---VTEKCDIYSYGVVLLELLTGRAPVQPLDQG-GDLVTWV 1026 (1114)
Q Consensus 959 a~~~~~~~~~--------~~~~~~g~~~y~aPE~~~~~~---~~~~~DvwslGvil~el~tg~~p~~~~~~~-~~~~~~~ 1026 (1114)
+......... ......||+.|+|||++.+.. ++.++||||||+++|||++|+.||...... ......+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~ 260 (317)
T 2buj_A 181 MNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAV 260 (317)
T ss_dssp CEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHH
T ss_pred chhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHh
Confidence 8764321111 012345799999999987554 688999999999999999999999532211 1111111
Q ss_pred HHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCC
Q 001253 1027 RNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGH 1092 (1114)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~ 1092 (1114)
. .. .. ..........+.+++.+||+.||.+|||++|+++.|+++......
T Consensus 261 ~----~~----------~~--~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~ 310 (317)
T 2buj_A 261 Q----NQ----------LS--IPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPG 310 (317)
T ss_dssp H----CC--------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC
T ss_pred h----cc----------CC--CCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCC
Confidence 1 10 00 011112234688999999999999999999999999998765443
No 202
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=351.72 Aligned_cols=268 Identities=19% Similarity=0.324 Sum_probs=199.9
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.++||+|+||+||+|+.+ +++.||||++........ ...+.+|+.++++++||||+++++++.+++..++||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~--~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 79 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGA--PCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVF 79 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC--------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEeccccccc--chhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEe
Confidence 57899999999999999999986 789999999975443211 123456999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+++ +|.+++......+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....+ .
T Consensus 80 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~-~ 154 (324)
T 3mtl_A 80 EYLDK-DLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIP-T 154 (324)
T ss_dssp ECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC-----
T ss_pred ccccc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCC-c
Confidence 99985 99999987777899999999999999999999999 9999999999999999999999999999865422 2
Q ss_pred CccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc-
Q 001253 968 KSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN- 1045 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1045 (1114)
.......||+.|+|||++.+ ..++.++||||+||++|||++|+.||....... ....+........ ...+.....
T Consensus 155 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~~--~~~~~~~~~~ 231 (324)
T 3mtl_A 155 KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEE-QLHFIFRILGTPT--EETWPGILSN 231 (324)
T ss_dssp --------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCC--TTTSTTGGGC
T ss_pred cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCC--hHhchhhhcc
Confidence 23344578999999999876 568999999999999999999999997543221 1222222211100 000000000
Q ss_pred ---------CC-C----cccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHhh
Q 001253 1046 ---------LQ-D----EKTVSHMITVLKIAMLCTNISPFDRPTMREVVL--MLSES 1086 (1114)
Q Consensus 1046 ---------~~-~----~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~i 1086 (1114)
.. . .........+.+++.+||+.||++|||++|+++ .+.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~ 288 (324)
T 3mtl_A 232 EEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSL 288 (324)
T ss_dssp HHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGG
T ss_pred hhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhc
Confidence 00 0 001122346789999999999999999999987 44444
No 203
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=1.5e-37 Score=371.67 Aligned_cols=253 Identities=26% Similarity=0.387 Sum_probs=209.4
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.++||+|+||+||+|+.+ +|+.||||++...........+.+.+|+.++++++||||+++++++.+.+..|+|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 467999999999999999999986 7899999999766544444567789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEE---CCCCCeEEeeccCceecC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILL---DDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~DfG~a~~~~ 963 (1114)
|||+.+|+|.+++.. ...+++..+..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++.+.
T Consensus 105 ~e~~~~~~L~~~~~~-~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 180 (484)
T 3nyv_A 105 GEVYTGGELFDEIIS-RKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE 180 (484)
T ss_dssp ECCCCSCBHHHHHHT-CSCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBC
T ss_pred EecCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcc
Confidence 999999999999874 45789999999999999999999999 99999999999999 567899999999998764
Q ss_pred CCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDAR 1043 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
. ........||+.|+|||++.+ .++.++||||+||++|+|++|+.||.... .....+.... +.+
T Consensus 181 ~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~~~~i~~-~~~-------- 244 (484)
T 3nyv_A 181 A--SKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGAN----EYDILKKVEK-GKY-------- 244 (484)
T ss_dssp C--CCSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHH-CCC--------
T ss_pred c--ccccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCC----HHHHHHHHHc-CCC--------
Confidence 2 233455679999999999876 69999999999999999999999997533 2222222222 111
Q ss_pred ccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1044 LNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1044 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
....+........+.+++.+||+.||++|||+.|+++
T Consensus 245 -~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 245 -TFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp -CCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred -CCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 1111111223456889999999999999999999985
No 204
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3e-37 Score=358.11 Aligned_cols=268 Identities=24% Similarity=0.347 Sum_probs=193.4
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-CCceeeEEeEEEecC--c
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-HRNIVKLYGFCYHQG--S 882 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~--~ 882 (1114)
..++|++.++||+|+||+||+|+++ +|+.||||++...... ....+.+.+|+.+++.+. ||||+++++++...+ .
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~-~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~ 85 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQN-STDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD 85 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CC-HHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccC-hHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence 3478999999999999999999976 7899999999754332 334556778999999997 999999999997654 6
Q ss_pred eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 883 NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
.|+||||+++ +|.++++. ..+++..+..++.|+++||+|||+. +|+||||||+|||++.++.+||+|||+|+.+
T Consensus 86 ~~lv~e~~~~-~L~~~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 159 (388)
T 3oz6_A 86 VYLVFDYMET-DLHAVIRA--NILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSRSF 159 (388)
T ss_dssp EEEEEECCSE-EHHHHHHH--TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEES
T ss_pred EEEEecccCc-CHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCcccccc
Confidence 8999999985 99999974 4789999999999999999999999 9999999999999999999999999999865
Q ss_pred CCC--------------------CCCccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCC
Q 001253 963 DMP--------------------QSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGD 1021 (1114)
Q Consensus 963 ~~~--------------------~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~ 1021 (1114)
... ........+||+.|+|||++.+ ..++.++||||+||++|||++|+.||........
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~ 239 (388)
T 3oz6_A 160 VNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQ 239 (388)
T ss_dssp SSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred cccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 321 1122344689999999999986 6789999999999999999999999975442221
Q ss_pred HHHHHHHHHhcCCcc----------ccccc--------ccccCCCcc------------cHHHHHHHHHHHhhccCCCCC
Q 001253 1022 LVTWVRNFIRNNSLV----------SGMLD--------ARLNLQDEK------------TVSHMITVLKIAMLCTNISPF 1071 (1114)
Q Consensus 1022 ~~~~~~~~~~~~~~~----------~~~~~--------~~~~~~~~~------------~~~~~~~l~~li~~cl~~dP~ 1071 (1114)
+...+ +.+...... ..... ......... .......+.+++.+||+.||+
T Consensus 240 ~~~i~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~ 318 (388)
T 3oz6_A 240 LERII-GVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPN 318 (388)
T ss_dssp HHHHH-HHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGG
T ss_pred HHHHH-HhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcc
Confidence 11111 111110000 00000 000000000 001234688999999999999
Q ss_pred CCCCHHHHHHH
Q 001253 1072 DRPTMREVVLM 1082 (1114)
Q Consensus 1072 ~RPs~~evl~~ 1082 (1114)
+|||++|+++-
T Consensus 319 ~R~t~~e~l~H 329 (388)
T 3oz6_A 319 KRISANDALKH 329 (388)
T ss_dssp GSCCHHHHTTS
T ss_pred cCCCHHHHhCC
Confidence 99999998764
No 205
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.7e-37 Score=348.60 Aligned_cols=264 Identities=28% Similarity=0.438 Sum_probs=210.7
Q ss_pred hcCCcCCceecccCCeEEEEEEe-----CCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC-
Q 001253 808 TDNFDERFVIGRGACGTVYRAVL-----RTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG- 881 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~-----~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~- 881 (1114)
.++|++.+.||+|+||+||+|++ .+|+.||||++.... ....+.+.+|+.++++++||||+++++++...+
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 116 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST---EEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGR 116 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC---SHHHHHHHHHHHHHHTCCCTTBCCEEEEECC---
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC---HHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCC
Confidence 46799999999999999999984 368899999997542 234567899999999999999999999987654
Q ss_pred -ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 882 -SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 882 -~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
..++||||+++++|.+++......+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 117 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~ 193 (326)
T 2w1i_A 117 RNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTK 193 (326)
T ss_dssp -CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred CceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchh
Confidence 78999999999999999987767899999999999999999999998 99999999999999999999999999998
Q ss_pred ecCCCCCC--ccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCC----------CCCC-HHHHHH
Q 001253 961 VIDMPQSK--SMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLD----------QGGD-LVTWVR 1027 (1114)
Q Consensus 961 ~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~----------~~~~-~~~~~~ 1027 (1114)
........ ......++..|+|||.+.+..++.++||||+|+++|||++|..|+.... .... ....+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (326)
T 2w1i_A 194 VLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLI 273 (326)
T ss_dssp ECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHH
T ss_pred hccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHH
Confidence 76533221 1223457788999999998889999999999999999999999875321 0000 001111
Q ss_pred HHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1028 NFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
..+.... + ...+......+.+++.+||+.||++|||+.|+++.|+++..+
T Consensus 274 ~~~~~~~--------~----~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~ 323 (326)
T 2w1i_A 274 ELLKNNG--------R----LPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQ 323 (326)
T ss_dssp HHHHTTC--------C----CCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHhhcCC--------C----CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 1111110 0 111122335688999999999999999999999999998653
No 206
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.7e-37 Score=354.69 Aligned_cols=265 Identities=23% Similarity=0.355 Sum_probs=200.2
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC-----
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG----- 881 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----- 881 (1114)
.++|++.+.||+|+||+||+|++. +|+.||||++..... .....+.+.+|+.+++.++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 102 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQ-SELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF 102 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCcccc-CHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence 367999999999999999999975 799999999965443 3344567889999999999999999999997653
Q ss_pred -ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 882 -SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 882 -~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
..|+||||+ +++|.++++. ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 103 ~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~ 176 (367)
T 1cm8_A 103 TDFYLVMPFM-GTDLGKLMKH--EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLAR 176 (367)
T ss_dssp CCCEEEEECC-SEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred ceEEEEEecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeeccc
Confidence 459999999 7799999974 4689999999999999999999999 99999999999999999999999999998
Q ss_pred ecCCCCCCccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhc-CCcccc
Q 001253 961 VIDMPQSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRN-NSLVSG 1038 (1114)
Q Consensus 961 ~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~ 1038 (1114)
.... .....+||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... ...+...... +.....
T Consensus 177 ~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~----~~~l~~i~~~~g~~~~~ 248 (367)
T 1cm8_A 177 QADS----EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDH----LDQLKEIMKVTGTPPAE 248 (367)
T ss_dssp ECCS----SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHHHCCCCHH
T ss_pred cccc----ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHHhcCCCCHH
Confidence 7542 2345678999999999887 6799999999999999999999999975432 2222211110 000000
Q ss_pred ccc--------------ccccCC--CcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHhhh
Q 001253 1039 MLD--------------ARLNLQ--DEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL--MLSESN 1087 (1114)
Q Consensus 1039 ~~~--------------~~~~~~--~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~i~ 1087 (1114)
... +..... ..........+.+++.+||+.||++|||++|+++ .+++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~~ 315 (367)
T 1cm8_A 249 FVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLH 315 (367)
T ss_dssp HHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC
T ss_pred HHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcChHHHhhc
Confidence 000 000000 0011122356889999999999999999999987 455543
No 207
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.5e-37 Score=352.83 Aligned_cols=268 Identities=24% Similarity=0.318 Sum_probs=200.8
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCC--hhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGN--NNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN 883 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 883 (1114)
..++|++.+.||+|+||+||+|+++ +|+.||||++....... ....+.+.+|+.+++.++||||+++++++.+.+..
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI 87 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence 3478999999999999999999976 68999999997543321 11234678899999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecC
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~ 963 (1114)
++||||+++ +|.+++......+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 88 ~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~ 163 (346)
T 1ua2_A 88 SLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFG 163 (346)
T ss_dssp EEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTT
T ss_pred EEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEecccceecc
Confidence 999999987 89999987777899999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCCccccccccccccCccccccC-CCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDA 1042 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1114)
.. ........||+.|+|||++.+. .++.++||||+||++|||++|..||........+...+.. .... ....+..
T Consensus 164 ~~-~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~-~~~~--~~~~~~~ 239 (346)
T 1ua2_A 164 SP-NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFET-LGTP--TEEQWPD 239 (346)
T ss_dssp SC-CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHH-HCCC--CTTTSSS
T ss_pred CC-cccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH-cCCC--Chhhhhh
Confidence 32 2233456799999999998764 4889999999999999999999998754322211111111 1110 0000000
Q ss_pred c--------ccCCCccc-----HHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 001253 1043 R--------LNLQDEKT-----VSHMITVLKIAMLCTNISPFDRPTMREVVLM 1082 (1114)
Q Consensus 1043 ~--------~~~~~~~~-----~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 1082 (1114)
. .......+ ......+.+++.+||+.||++|||++|+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 240 MCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM 292 (346)
T ss_dssp TTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred hccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 0 00000001 1223578899999999999999999999863
No 208
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=5.5e-37 Score=352.90 Aligned_cols=253 Identities=15% Similarity=0.202 Sum_probs=206.7
Q ss_pred HHhcCCcCCceecccCCeEEEEEE------eCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC---CCceeeEEeE
Q 001253 806 VATDNFDERFVIGRGACGTVYRAV------LRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR---HRNIVKLYGF 876 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~------~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~ 876 (1114)
...++|++.++||+|+||+||+|+ ..+++.||||++.... ..++..|+.++++++ |+||++++++
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~------~~~~~~e~~~~~~l~~~~~~~iv~~~~~ 135 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN------PWEFYIGTQLMERLKPSMQHMFMKFYSA 135 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC------HHHHHHHHHHHHHSCGGGGGGBCCEEEE
T ss_pred ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC------hhHHHHHHHHHHHhhhhhhhhhhhhhee
Confidence 455789999999999999999994 3468899999986432 445777888888776 8999999999
Q ss_pred EEecCceEEEEecCCCCCHHHHhcc----CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC-----
Q 001253 877 CYHQGSNLLMYEYMARGSLGELLHG----ASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD----- 947 (1114)
Q Consensus 877 ~~~~~~~~lv~E~~~~gsL~~~l~~----~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~----- 947 (1114)
+..++..|+||||+++|+|.++++. ....+++..+..++.|+++||+|||+. +|+||||||+|||++.
T Consensus 136 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~ 212 (365)
T 3e7e_A 136 HLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQ 212 (365)
T ss_dssp EECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC
T ss_pred eecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCc
Confidence 9999999999999999999999974 345799999999999999999999998 9999999999999998
Q ss_pred ------CCCeEEeeccCceecCC-CCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCC
Q 001253 948 ------KFEAHVGDFGLAKVIDM-PQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGG 1020 (1114)
Q Consensus 948 ------~~~~kl~DfG~a~~~~~-~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~ 1020 (1114)
++.+||+|||+|+.+.. .........+||+.|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 213 ~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~ 292 (365)
T 3e7e_A 213 DDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE 292 (365)
T ss_dssp ------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE
T ss_pred cccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCc
Confidence 89999999999986532 22334456689999999999999999999999999999999999999986432211
Q ss_pred CHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCC-CCHHHHHHHHHhhhcc
Q 001253 1021 DLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDR-PTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R-Ps~~evl~~L~~i~~~ 1089 (1114)
. .....+. ... ....+.+++..|++.+|.+| |+++++.+.|+++..+
T Consensus 293 --------------~---~~~~~~~--~~~---~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~ 340 (365)
T 3e7e_A 293 --------------C---KPEGLFR--RLP---HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQ 340 (365)
T ss_dssp --------------E---EECSCCT--TCS---SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred --------------e---eechhcc--ccC---cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 0 0011111 111 13356688999999999998 6899999999888654
No 209
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=2e-37 Score=343.53 Aligned_cols=253 Identities=25% Similarity=0.371 Sum_probs=208.3
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.+.||+|+||+||+|+.. +++.||+|++...........+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 67999999999999999999986 67899999997543322233567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||+++|+|.+++... ..+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||++.....
T Consensus 94 e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~--- 166 (284)
T 2vgo_A 94 EFAPRGELYKELQKH-GRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPS--- 166 (284)
T ss_dssp CCCTTEEHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSS---
T ss_pred EeCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCcc---
Confidence 999999999999743 4689999999999999999999998 999999999999999999999999999976532
Q ss_pred CccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccCC
Q 001253 968 KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQ 1047 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 (1114)
.......|++.|+|||++.+..++.++||||+|+++|+|++|+.||.... ........... . ..
T Consensus 167 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~~~~~-~---------~~-- 230 (284)
T 2vgo_A 167 LRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPS----HTETHRRIVNV-D---------LK-- 230 (284)
T ss_dssp SCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS----HHHHHHHHHTT-C---------CC--
T ss_pred cccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCC----HhHHHHHHhcc-c---------cC--
Confidence 22344579999999999999999999999999999999999999996433 22222222211 1 11
Q ss_pred CcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHhh
Q 001253 1048 DEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL--MLSES 1086 (1114)
Q Consensus 1048 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~i 1086 (1114)
.+......+.+++.+||+.||.+||+++|+++ .++..
T Consensus 231 --~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h~~~~~~ 269 (284)
T 2vgo_A 231 --FPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEHPWVKAN 269 (284)
T ss_dssp --CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTCHHHHHH
T ss_pred --CCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhCHHHHhh
Confidence 11112346789999999999999999999986 44443
No 210
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-37 Score=350.17 Aligned_cols=253 Identities=21% Similarity=0.318 Sum_probs=198.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCC--CceeeEEeEEEecCceEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRH--RNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~l 885 (1114)
.++|++.+.||+|+||+||+|..++++.||||++..... .....+.+.+|+.++++++| |||+++++++.+++..++
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 86 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 86 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeecccc-chHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEE
Confidence 467999999999999999999998899999999976543 33445678899999999986 999999999999999999
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCC
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~ 965 (1114)
|||+ .+++|.+++.. ...+++.++..++.|+++||+|||+. +|+||||||+|||++ ++.+||+|||+++.....
T Consensus 87 v~e~-~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~ 160 (343)
T 3dbq_A 87 VMEC-GNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 160 (343)
T ss_dssp EECC-CSEEHHHHHHH-SCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC---
T ss_pred EEeC-CCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccCcc
Confidence 9995 57799999985 45789999999999999999999999 999999999999997 678999999999876433
Q ss_pred CCC-ccccccccccccCcccccc-----------CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcC
Q 001253 966 QSK-SMSAIAGSYGYIAPEYAYT-----------MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNN 1033 (1114)
Q Consensus 966 ~~~-~~~~~~g~~~y~aPE~~~~-----------~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 1033 (1114)
... .....+||+.|+|||++.+ ..++.++||||+||++|||++|+.||.... .............
T Consensus 161 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~---~~~~~~~~~~~~~ 237 (343)
T 3dbq_A 161 TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII---NQISKLHAIIDPN 237 (343)
T ss_dssp ---------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCC---SHHHHHHHHHCTT
T ss_pred cccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhh---hHHHHHHHHhcCC
Confidence 222 2345679999999999865 678899999999999999999999996432 2222222222211
Q ss_pred CcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 001253 1034 SLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLM 1082 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 1082 (1114)
.. . ..+......+.+++.+||+.||.+|||+.|+++.
T Consensus 238 ~~--------~----~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 238 HE--------I----EFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp SC--------C----CCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cc--------c----CCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 10 0 0111112357899999999999999999999864
No 211
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=2.6e-37 Score=357.69 Aligned_cols=253 Identities=21% Similarity=0.324 Sum_probs=200.0
Q ss_pred hcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC--CCceeeEEeEEEecCceEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR--HRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~l 885 (1114)
.++|++.+.||+|+||+||+|..++++.||||++..... .....+.+.+|+.++++++ ||||+++++++..++..|+
T Consensus 55 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~l 133 (390)
T 2zmd_A 55 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 133 (390)
T ss_dssp TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTC-CHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred CCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccc-cHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEE
Confidence 356999999999999999999988899999999976543 3344677899999999996 5999999999999999999
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCC
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~ 965 (1114)
||| +.+++|.+++... ..+++.++..++.|+++||+|||+. +|+||||||+|||++ ++.+||+|||+++.+...
T Consensus 134 v~E-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~ 207 (390)
T 2zmd_A 134 VME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD 207 (390)
T ss_dssp EEE-CCSEEHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC---
T ss_pred EEe-cCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccCC
Confidence 999 5677999999854 4788999999999999999999998 999999999999995 579999999999876433
Q ss_pred CC-CccccccccccccCcccccc-----------CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcC
Q 001253 966 QS-KSMSAIAGSYGYIAPEYAYT-----------MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNN 1033 (1114)
Q Consensus 966 ~~-~~~~~~~g~~~y~aPE~~~~-----------~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 1033 (1114)
.. ......+||+.|+|||++.+ ..++.++|||||||++|||++|+.||.... .....+...+...
T Consensus 208 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~---~~~~~~~~~~~~~ 284 (390)
T 2zmd_A 208 TTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII---NQISKLHAIIDPN 284 (390)
T ss_dssp ------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCC---CHHHHHHHHHCTT
T ss_pred CccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhh---HHHHHHHHHhCcc
Confidence 22 12345679999999999865 368899999999999999999999996432 2222333322211
Q ss_pred CcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 001253 1034 SLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLM 1082 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 1082 (1114)
.. ...... ....+.+++.+||+.||.+|||+.|+++.
T Consensus 285 ~~--------~~~~~~----~~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 285 HE--------IEFPDI----PEKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp SC--------CCCCCC----SCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cc--------CCCCcc----chHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 10 000011 12367899999999999999999999853
No 212
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=7e-37 Score=342.65 Aligned_cols=250 Identities=27% Similarity=0.389 Sum_probs=207.5
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.+.|++.+.||+|+||+||+|+.. +++.||||++...... ...+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 98 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAE--DEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWII 98 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCS--TTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccH--HHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEE
Confidence 367999999999999999999975 7899999999765432 2356789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++++|.+++.. ..+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++.......
T Consensus 99 ~e~~~~~~L~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~ 173 (303)
T 3a7i_A 99 MEYLGGGSALDLLEP--GPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ 173 (303)
T ss_dssp EECCTTEEHHHHHTT--SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTTB
T ss_pred EEeCCCCcHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCccc
Confidence 999999999999973 5789999999999999999999999 99999999999999999999999999998764322
Q ss_pred CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
.......|++.|+|||++.+..++.++||||||+++|||++|+.||..... ...... +..... ..
T Consensus 174 -~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~-~~~~~~------~~--- 238 (303)
T 3a7i_A 174 -IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHP----MKVLFL-IPKNNP------PT--- 238 (303)
T ss_dssp -CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHH-HHHSCC------CC---
T ss_pred -cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCH----HHHHHH-hhcCCC------CC---
Confidence 233456799999999999999999999999999999999999999964331 122211 111110 00
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLM 1082 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~ 1082 (1114)
........+.+++.+||+.||++|||+.|+++.
T Consensus 239 ---~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 271 (303)
T 3a7i_A 239 ---LEGNYSKPLKEFVEACLNKEPSFRPTAKELLKH 271 (303)
T ss_dssp ---CCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTC
T ss_pred ---CccccCHHHHHHHHHHcCCChhhCcCHHHHhhC
Confidence 011122358899999999999999999999874
No 213
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=3.6e-37 Score=349.45 Aligned_cols=267 Identities=24% Similarity=0.397 Sum_probs=203.3
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.+.||+|+||+||+|+++ +|+.||||++..... .....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDD-DKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSS-CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCC-chHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 67999999999999999999986 689999999875543 3344566889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS 967 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~ 967 (1114)
||++++++.++.. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..... .
T Consensus 104 e~~~~~~l~~~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-~ 178 (331)
T 4aaa_A 104 EFVDHTILDDLEL-FPNGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAAP-G 178 (331)
T ss_dssp ECCSEEHHHHHHH-STTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred ecCCcchHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecCC-c
Confidence 9999999988876 345799999999999999999999999 9999999999999999999999999999865432 2
Q ss_pred CccccccccccccCccccccC-CCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH----------HHHhcCCcc
Q 001253 968 KSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVR----------NFIRNNSLV 1036 (1114)
Q Consensus 968 ~~~~~~~g~~~y~aPE~~~~~-~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~----------~~~~~~~~~ 1036 (1114)
.......|++.|+|||++.+. .++.++||||+||++|||++|+.||.............. .........
T Consensus 179 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (331)
T 4aaa_A 179 EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVF 258 (331)
T ss_dssp -----CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGG
T ss_pred cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhcccc
Confidence 233455799999999998875 689999999999999999999999975443222211111 011111111
Q ss_pred cccccccccCCCc---ccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1037 SGMLDARLNLQDE---KTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1037 ~~~~~~~~~~~~~---~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.....+....... ........+.+++.+||+.||++|||++|+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 259 AGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp TTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred ccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhc
Confidence 1111111110000 01122457889999999999999999999875
No 214
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=6.4e-37 Score=347.55 Aligned_cols=259 Identities=21% Similarity=0.274 Sum_probs=201.1
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-CCceeeEEeEEEe--cCce
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-HRNIVKLYGFCYH--QGSN 883 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--~~~~ 883 (1114)
.++|++.++||+|+||+||+|+.. +++.||||++.... .+.+.+|+.++++++ ||||+++++++.+ ....
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~------~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~ 108 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK------KKKIKREIKILENLRGGPNIITLADIVKDPVSRTP 108 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC------HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc------hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCce
Confidence 378999999999999999999975 78999999986422 466889999999997 9999999999987 5678
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC-CeEEeeccCceec
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF-EAHVGDFGLAKVI 962 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~-~~kl~DfG~a~~~ 962 (1114)
++||||+++++|.++++ .+++..+..++.|+++||+|||+. +|+||||||+||+++.++ .+||+|||+++..
T Consensus 109 ~lv~e~~~~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~ 181 (330)
T 3nsz_A 109 ALVFEHVNNTDFKQLYQ----TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFY 181 (330)
T ss_dssp EEEEECCCCCCHHHHGG----GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred EEEEeccCchhHHHHHH----hCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEc
Confidence 99999999999999986 488999999999999999999999 999999999999999776 8999999999876
Q ss_pred CCCCCCccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccc-
Q 001253 963 DMPQSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML- 1040 (1114)
Q Consensus 963 ~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1040 (1114)
... .......|++.|+|||++.+ ..++.++||||+||++|||++|+.||.......+....+..........+.+.
T Consensus 182 ~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 259 (330)
T 3nsz_A 182 HPG--QEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDK 259 (330)
T ss_dssp CTT--CCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCC--CccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHH
Confidence 432 23345579999999999877 67899999999999999999999999654332221111111111000000000
Q ss_pred -----cc------------cc--cCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1041 -----DA------------RL--NLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1041 -----~~------------~~--~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
++ .. .............+.+++.+||++||++|||++|+++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 260 YNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp TTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred hccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 00 00 0000111113457889999999999999999999875
No 215
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=2.5e-37 Score=348.60 Aligned_cols=257 Identities=23% Similarity=0.311 Sum_probs=197.3
Q ss_pred cCCcCC-ceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceEE
Q 001253 809 DNFDER-FVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 809 ~~~~~~-~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 885 (1114)
+.|++. ++||+|+||+||+|+.. +++.||||++..... ...+.+.+|+.++.++ +||||+++++++.+++..|+
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~l 88 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPG---HIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYL 88 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSS---CCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcc---hhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEE
Confidence 567774 78999999999999965 789999999976533 2356788999999885 79999999999999999999
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCC---eEEeeccCceec
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFE---AHVGDFGLAKVI 962 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~DfG~a~~~ 962 (1114)
||||+++|+|.+++... ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++. +||+|||+++..
T Consensus 89 v~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~ 164 (316)
T 2ac3_A 89 VFEKMRGGSILSHIHKR-RHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGI 164 (316)
T ss_dssp EEECCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC--
T ss_pred EEEcCCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCcccc
Confidence 99999999999999743 4689999999999999999999999 9999999999999998776 999999999765
Q ss_pred CCCCC------CccccccccccccCcccccc-----CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCH---------
Q 001253 963 DMPQS------KSMSAIAGSYGYIAPEYAYT-----MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDL--------- 1022 (1114)
Q Consensus 963 ~~~~~------~~~~~~~g~~~y~aPE~~~~-----~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~--------- 1022 (1114)
..... ......+||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 244 (316)
T 2ac3_A 165 KLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPA 244 (316)
T ss_dssp -----------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHH
T ss_pred ccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchh
Confidence 32211 12234569999999999875 56889999999999999999999999765432200
Q ss_pred -HHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1023 -VTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1023 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
...+...+.... ..............+.+++.+||+.||++|||++|+++
T Consensus 245 ~~~~~~~~i~~~~---------~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 245 CQNMLFESIQEGK---------YEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHHHHHHHHHCC---------CCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHHhccC---------cccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 011111111111 10000000112346889999999999999999999986
No 216
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-37 Score=367.39 Aligned_cols=322 Identities=21% Similarity=0.185 Sum_probs=290.3
Q ss_pred cccccccccCCCCCchhhhcccccceeecccccccCcccccccccccCCEEEcccccccccccCccccccceeeeeccCC
Q 001253 321 LEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDN 400 (1114)
Q Consensus 321 ~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 400 (1114)
..++.++++++ .+|..+. .+++.|+|++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46788888887 5565553 58999999999999998999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCc
Q 001253 401 SLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPS 480 (1114)
Q Consensus 401 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 480 (1114)
++.+..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 99988888899999999999999999999999999999999999999999988899999999999999999999977777
Q ss_pred hhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccc
Q 001253 481 DLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKML 560 (1114)
Q Consensus 481 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 560 (1114)
.+..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.+.+|.......+|++|+|++|++++..+..+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 89999999999999999998888899999999999999999888888877777899999999999995444577889999
Q ss_pred eEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhccc
Q 001253 561 QRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSY 640 (1114)
Q Consensus 561 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~ 640 (1114)
+.|+|++|++++..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|+ .|+|++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~ 329 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE-TLILDS 329 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC-EEECCS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC-EEEccC
Confidence 9999999999988888899999999999999999988888899999999999999999876666777777777 677777
Q ss_pred cccccc
Q 001253 641 NNLSGL 646 (1114)
Q Consensus 641 N~l~~~ 646 (1114)
|.+++.
T Consensus 330 N~l~c~ 335 (477)
T 2id5_A 330 NPLACD 335 (477)
T ss_dssp SCEECS
T ss_pred CCccCc
Confidence 777654
No 217
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=2.8e-37 Score=356.13 Aligned_cols=255 Identities=11% Similarity=0.045 Sum_probs=186.6
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHH---HHhcCCCCceeeEE-------eEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEIL---TLGKIRHRNIVKLY-------GFC 877 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~---~l~~l~h~niv~l~-------~~~ 877 (1114)
.+|++.++||+|+||+||+|++. +|+.||||++...........+.+.+|+. .++. +||||++++ +++
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehhe
Confidence 56889999999999999999976 78999999998876555555667788854 5555 799988755 555
Q ss_pred EecC-----------------ceEEEEecCCCCCHHHHhccCCCCCCHHHH------HHHHHHHHHHHHHHHhCCCCCeE
Q 001253 878 YHQG-----------------SNLLMYEYMARGSLGELLHGASSTLDWQTR------FMIALGAAEGLSYLHHDCKPRIF 934 (1114)
Q Consensus 878 ~~~~-----------------~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~------~~i~~~i~~~L~~LH~~~~~~iv 934 (1114)
...+ ..|+||||++ |+|.++++.....+++..+ ..++.|+++||+|||+. +|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~iv 216 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSK---GLV 216 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHC---CCc
Confidence 4433 3799999999 7999999854445566666 78889999999999999 999
Q ss_pred ecCCCCCCeEECCCCCeEEeeccCceecCCCCCCccccccccccccCcccccc--CCCCcccchHHHHHHHHHHHhCCCC
Q 001253 935 HRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYT--MKVTEKCDIYSYGVVLLELLTGRAP 1012 (1114)
Q Consensus 935 H~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~--~~~~~~~DvwslGvil~el~tg~~p 1012 (1114)
||||||+|||++.++.+||+|||+|+.... ......+|+.|+|||++.+ ..++.++||||+||++|||++|+.|
T Consensus 217 HrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~P 292 (371)
T 3q60_A 217 HGHFTPDNLFIMPDGRLMLGDVSALWKVGT----RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLP 292 (371)
T ss_dssp ETTCSGGGEEECTTSCEEECCGGGEEETTC----EEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCS
T ss_pred cCcCCHHHEEECCCCCEEEEecceeeecCC----CccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999987532 1224457799999999987 7799999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1013 VQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
|......... .+ .. ............ ..........+.+++.+||+.||++|||+.|+++
T Consensus 293 f~~~~~~~~~-~~-----~~-~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 293 FGLVTPGIKG-SW-----KR-PSLRVPGTDSLA--FGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352 (371)
T ss_dssp TTBCCTTCTT-CC-----CB-CCTTSCCCCSCC--CTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred CCCcCccccc-ch-----hh-hhhhhccccccc--hhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 9765322100 00 00 000000011111 1111123457889999999999999999999864
No 218
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=2e-37 Score=382.00 Aligned_cols=247 Identities=22% Similarity=0.275 Sum_probs=204.3
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceE
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 884 (1114)
..++|++.++||+|+||+||+|+++ +++.||||++++.........+.+..|..++..+ +||+|+++++++.+.+..|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 4578999999999999999999976 6889999999864322222345677899999887 7999999999999999999
Q ss_pred EEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCC
Q 001253 885 LMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDM 964 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~ 964 (1114)
+||||+++|+|.++++.. ..+++..+..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+|+....
T Consensus 419 lV~E~~~gg~L~~~l~~~-~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 494 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQV-GRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 494 (674)
T ss_dssp EEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEECCC
T ss_pred EEEeCcCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeecccc
Confidence 999999999999999843 4689999999999999999999999 999999999999999999999999999986432
Q ss_pred CCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccc
Q 001253 965 PQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARL 1044 (1114)
Q Consensus 965 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1114)
........+||+.|+|||++.+..++.++|||||||++|||++|+.||.... ..+..+..... . .
T Consensus 495 -~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~----~~~~~~~i~~~-~---------~ 559 (674)
T 3pfq_A 495 -DGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED----EDELFQSIMEH-N---------V 559 (674)
T ss_dssp -TTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHSS-C---------C
T ss_pred -CCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCC----HHHHHHHHHhC-C---------C
Confidence 2334456789999999999999999999999999999999999999997533 22233322221 1 1
Q ss_pred cCCCcccHHHHHHHHHHHhhccCCCCCCCCCH
Q 001253 1045 NLQDEKTVSHMITVLKIAMLCTNISPFDRPTM 1076 (1114)
Q Consensus 1045 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~ 1076 (1114)
..+......+.+++.+||+.||++||++
T Consensus 560 ----~~p~~~s~~~~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 560 ----AYPKSMSKEAVAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp ----CCCTTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred ----CCCccCCHHHHHHHHHHccCCHHHCCCC
Confidence 1112233468899999999999999997
No 219
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=2e-37 Score=350.99 Aligned_cols=260 Identities=26% Similarity=0.373 Sum_probs=206.4
Q ss_pred hcCCcCCceecccCCeEEEEEEeC------CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR------TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG 881 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 881 (1114)
.++|++.+.||+|+||+||+|++. +++.||||++.... .......+.+|+.++++++||||+++++++.+.+
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 106 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVC--SEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL 106 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSC--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecccc--chhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC
Confidence 478999999999999999999842 57789999996433 2344567889999999999999999999999999
Q ss_pred ceEEEEecCCCCCHHHHhccCC------CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC---CCCeE
Q 001253 882 SNLLMYEYMARGSLGELLHGAS------STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD---KFEAH 952 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~------~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~k 952 (1114)
..|+||||+++|+|.+++.... ..+++..+..++.|+++||+|||+. +|+||||||+||+++. +..+|
T Consensus 107 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~k 183 (327)
T 2yfx_A 107 PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAK 183 (327)
T ss_dssp SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEE
T ss_pred CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEE
Confidence 9999999999999999997543 3589999999999999999999999 9999999999999994 44699
Q ss_pred EeeccCceecCCCCC-CccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHH
Q 001253 953 VGDFGLAKVIDMPQS-KSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFI 1030 (1114)
Q Consensus 953 l~DfG~a~~~~~~~~-~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~ 1030 (1114)
|+|||+++....... .......|++.|+|||++.+..++.++||||||+++|||++ |+.||.... ...... .+
T Consensus 184 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~----~~~~~~-~~ 258 (327)
T 2yfx_A 184 IGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS----NQEVLE-FV 258 (327)
T ss_dssp ECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC----HHHHHH-HH
T ss_pred ECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcC----HHHHHH-HH
Confidence 999999975532222 22334568899999999999999999999999999999998 899986432 222222 22
Q ss_pred hcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhcc
Q 001253 1031 RNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRR 1089 (1114)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~ 1089 (1114)
...... ..+......+.+++.+||+.||.+||++.|+++.|+.+...
T Consensus 259 ~~~~~~------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~ 305 (327)
T 2yfx_A 259 TSGGRM------------DPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 305 (327)
T ss_dssp HTTCCC------------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred hcCCCC------------CCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence 221110 01112234688999999999999999999999999988654
No 220
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.9e-37 Score=344.15 Aligned_cols=251 Identities=25% Similarity=0.400 Sum_probs=202.8
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEE
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 885 (1114)
..++|++.+.||+|+||+||+|+++ +|+.||+|++..... .+.+.+|+.+++.++||||+++++++...+..++
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 101 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD-----LQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWI 101 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSC-----CHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHH-----HHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEE
Confidence 4578999999999999999999986 689999999976432 4568889999999999999999999999999999
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCC
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~ 965 (1114)
||||+++++|.+++......+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||.+......
T Consensus 102 v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 178 (314)
T 3com_A 102 VMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDT 178 (314)
T ss_dssp EEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBTT
T ss_pred EeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhhh
Confidence 9999999999999975567899999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc
Q 001253 966 QSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 966 ~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
........|++.|+|||++.+..++.++||||+|+++|+|++|+.||..... ............ ...
T Consensus 179 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~~~-------~~~- 245 (314)
T 3com_A 179 -MAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHP----MRAIFMIPTNPP-------PTF- 245 (314)
T ss_dssp -BSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHHHHSCC-------CCC-
T ss_pred -ccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCCh----HHHHHHHhcCCC-------ccc-
Confidence 2233455799999999999999999999999999999999999999974332 122211111110 000
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
..+......+.+++.+||+.||.+|||+.|+++
T Consensus 246 ---~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 246 ---RKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp ---SSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ---CCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 111122346889999999999999999999986
No 221
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=4.7e-37 Score=352.68 Aligned_cols=257 Identities=27% Similarity=0.411 Sum_probs=206.7
Q ss_pred HHHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCC-----hhhHHHHHHHHHHHhcC-CCCceeeEEeEE
Q 001253 805 VVATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGN-----NNVDNSFRAEILTLGKI-RHRNIVKLYGFC 877 (1114)
Q Consensus 805 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~-----~~~~~~~~~E~~~l~~l-~h~niv~l~~~~ 877 (1114)
....++|++.+.||+|+||.||+|+++ +|+.||||++....... ....+.+.+|+.+++++ +||||+++++++
T Consensus 90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 169 (365)
T 2y7j_A 90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY 169 (365)
T ss_dssp HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence 344578999999999999999999986 79999999997654321 12245678899999999 799999999999
Q ss_pred EecCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeecc
Q 001253 878 YHQGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFG 957 (1114)
Q Consensus 878 ~~~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG 957 (1114)
...+..|+||||+++++|.+++.. ...+++..+..++.|++.||+|||+. ||+||||||+||+++.++.+||+|||
T Consensus 170 ~~~~~~~lv~e~~~g~~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~ikl~DfG 245 (365)
T 2y7j_A 170 ESSSFMFLVFDLMRKGELFDYLTE-KVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQIRLSDFG 245 (365)
T ss_dssp EBSSEEEEEECCCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCT
T ss_pred eeCCEEEEEEEeCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEEecC
Confidence 999999999999999999999974 34689999999999999999999998 99999999999999999999999999
Q ss_pred CceecCCCCCCccccccccccccCcccccc------CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHh
Q 001253 958 LAKVIDMPQSKSMSAIAGSYGYIAPEYAYT------MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIR 1031 (1114)
Q Consensus 958 ~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~------~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~ 1031 (1114)
++..... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.... .....+....
T Consensus 246 ~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~----~~~~~~~i~~ 319 (365)
T 2y7j_A 246 FSCHLEP--GEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRR----QILMLRMIME 319 (365)
T ss_dssp TCEECCT--TCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHH
T ss_pred cccccCC--CcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCC----HHHHHHHHHh
Confidence 9987653 233345689999999998863 358889999999999999999999996432 1222222111
Q ss_pred cCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1032 NNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1032 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.... ............+.+++.+||+.||++|||+.|+++
T Consensus 320 -~~~~---------~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 320 -GQYQ---------FSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp -TCCC---------CCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred -CCCC---------CCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1110 000000112346889999999999999999999986
No 222
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=8.1e-37 Score=349.71 Aligned_cols=267 Identities=21% Similarity=0.343 Sum_probs=204.3
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEec-------
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQ------- 880 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------- 880 (1114)
++|++.++||+|+||+||+|+++ +|+.||||++....... .....+.+|+.+++.++||||+++++++...
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKE-GFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSS-SSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccc-cchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 68999999999999999999985 78999999987654432 2345677899999999999999999999873
Q ss_pred -CceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCc
Q 001253 881 -GSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLA 959 (1114)
Q Consensus 881 -~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a 959 (1114)
+..++||||+++ ++.+.+......+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 171 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLA 171 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccchhc
Confidence 467999999986 88888876667899999999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCC---CCccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCc
Q 001253 960 KVIDMPQ---SKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSL 1035 (1114)
Q Consensus 960 ~~~~~~~---~~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1114)
+.+.... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||....... ....+.........
T Consensus 172 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~~ 250 (351)
T 3mi9_A 172 RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQH-QLALISQLCGSITP 250 (351)
T ss_dssp EECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCT
T ss_pred ccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCCh
Confidence 8764222 223345678999999999876 458999999999999999999999997543211 12222222111000
Q ss_pred --cccccc----cccc--CCCcccH-H------HHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1036 --VSGMLD----ARLN--LQDEKTV-S------HMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1036 --~~~~~~----~~~~--~~~~~~~-~------~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
...... .... ....... . ....+.+++.+||+.||++|||++|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 251 EVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp TTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred hhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 000000 0000 0000000 0 1245789999999999999999999886
No 223
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=7.7e-37 Score=345.39 Aligned_cols=254 Identities=26% Similarity=0.365 Sum_probs=200.8
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCC-----ChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREG-----NNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG 881 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 881 (1114)
.++|++.+.||+|+||+||+|+++ +++.||||++...... .......+.+|+.++++++||||+++++++..+.
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 88 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 88 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence 468999999999999999999976 6899999999754321 1122345789999999999999999999987654
Q ss_pred ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCC---eEEeeccC
Q 001253 882 SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFE---AHVGDFGL 958 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~DfG~ 958 (1114)
.|+||||+++++|.+++.. ...+++..+..++.|+++||+|||+. +|+||||||+||+++.++. +||+|||+
T Consensus 89 -~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~ 163 (322)
T 2ycf_A 89 -YYIVLELMEGGELFDKVVG-NKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITDFGH 163 (322)
T ss_dssp -EEEEEECCTTEETHHHHST-TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECCCTT
T ss_pred -eEEEEecCCCCcHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEccCcc
Confidence 8999999999999999874 45789999999999999999999999 9999999999999987664 99999999
Q ss_pred ceecCCCCCCccccccccccccCccccc---cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCc
Q 001253 959 AKVIDMPQSKSMSAIAGSYGYIAPEYAY---TMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSL 1035 (1114)
Q Consensus 959 a~~~~~~~~~~~~~~~g~~~y~aPE~~~---~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1114)
++.... ........||+.|+|||++. ...++.++||||+||++|+|++|+.||............+.. ...
T Consensus 164 ~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~----~~~ 237 (322)
T 2ycf_A 164 SKILGE--TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITS----GKY 237 (322)
T ss_dssp CEECCC--CHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHH----TCC
T ss_pred ceeccc--ccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHh----Ccc
Confidence 987542 22234557999999999874 566889999999999999999999999866554444443332 110
Q ss_pred ccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1036 VSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1036 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.............+.+++.+||+.||++||++.|+++
T Consensus 238 ---------~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 238 ---------NFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp ---------CCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ---------ccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 0000011112346889999999999999999999884
No 224
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=3.1e-37 Score=348.31 Aligned_cols=279 Identities=21% Similarity=0.365 Sum_probs=206.2
Q ss_pred HHHHHHHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEec
Q 001253 801 FKDLVVATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQ 880 (1114)
Q Consensus 801 ~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 880 (1114)
.+++.+..++|++.+.||+|+||+||+|+++. .||+|++....... ...+.+.+|+.++++++||||+++++++.+.
T Consensus 25 ~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~ 101 (319)
T 2y4i_B 25 LQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNE-DQLKAFKREVMAYRQTRHENVVLFMGACMSP 101 (319)
T ss_dssp GGGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCC-CCCCCCCTTGGGGTTCCCTTBCCCCEEEECS
T ss_pred cccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCH-HHHHHHHHHHHHHhcCCCCCEeEEEEEEecC
Confidence 34444556889999999999999999999863 49999987654322 2234577899999999999999999999999
Q ss_pred CceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 881 GSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 881 ~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
+..++||||+++++|.+++......+++..+..++.|++.||+|||+. +++||||||+||+++ ++.+||+|||+++
T Consensus 102 ~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~ 177 (319)
T 2y4i_B 102 PHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFS 177 (319)
T ss_dssp SCEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC
T ss_pred CceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCcc
Confidence 999999999999999999987767899999999999999999999999 999999999999998 6799999999987
Q ss_pred ecCCCC----CCccccccccccccCcccccc---------CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 001253 961 VIDMPQ----SKSMSAIAGSYGYIAPEYAYT---------MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVR 1027 (1114)
Q Consensus 961 ~~~~~~----~~~~~~~~g~~~y~aPE~~~~---------~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~ 1027 (1114)
...... ........|++.|+|||++.+ ..++.++||||||+++|||++|+.||..... .....
T Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~----~~~~~ 253 (319)
T 2y4i_B 178 ISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPA----EAIIW 253 (319)
T ss_dssp ----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCH----HHHHH
T ss_pred ccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHH
Confidence 643211 122334569999999999874 4578899999999999999999999964332 22222
Q ss_pred HHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCcccccCCCCC
Q 001253 1028 NFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFEFSPMDHDS 1102 (1114)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~~~~~~~~~ 1102 (1114)
.. ..... +... .......+.+++.+||+.||++|||+.|+++.|+++..+..+...+..+|..
T Consensus 254 ~~-~~~~~------~~~~-----~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~~~~~~~~~~~~ 316 (319)
T 2y4i_B 254 QM-GTGMK------PNLS-----QIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNRRLSHPGHFWKS 316 (319)
T ss_dssp HH-HTTCC------CCCC-----CSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----------------
T ss_pred Hh-ccCCC------CCCC-----cCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhccCCCCcccccc
Confidence 21 11110 0000 0011235788999999999999999999999999999888777666666653
No 225
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=8.9e-37 Score=341.17 Aligned_cols=264 Identities=23% Similarity=0.346 Sum_probs=201.7
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.+.||+|+||+||+|+.+ +|+.||||++....... ...+.+.+|+.++++++||||+++++++..++..++||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETE-GVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF 81 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC---------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccch-hhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEE
Confidence 57899999999999999999986 78999999987554322 22456888999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 888 EYMARGSLGELLHGAS-STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
||++ ++|.+++.... ..+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||.+.....+.
T Consensus 82 e~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~ 157 (299)
T 2r3i_A 82 EFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV 157 (299)
T ss_dssp ECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred Eccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc
Confidence 9998 59999987543 4689999999999999999999999 99999999999999999999999999998764322
Q ss_pred CCccccccccccccCccccccCC-CCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccc----
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMK-VTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLD---- 1041 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~-~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 1041 (1114)
.......|++.|+|||++.+.. ++.++||||+|+++|||++|+.||......+......+. ... .....+.
T Consensus 158 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~ 233 (299)
T 2r3i_A 158 -RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRT-LGT--PDEVVWPGVTS 233 (299)
T ss_dssp -BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHH-HCC--CCTTTSTTGGG
T ss_pred -cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHH-hCC--CchhhhhHhhc
Confidence 2233456899999999998765 789999999999999999999999754332212221111 111 0000000
Q ss_pred -----ccccCCCc-----ccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1042 -----ARLNLQDE-----KTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1042 -----~~~~~~~~-----~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
........ ........+.+++.+||+.||++|||+.|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 234 MPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp STTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CcccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 00000000 00112346889999999999999999999986
No 226
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=6.1e-37 Score=366.78 Aligned_cols=251 Identities=25% Similarity=0.360 Sum_probs=199.6
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|++.++||+|+||+||+|+.+ +++.||+|++........ ....+.+|+.+++.++||||+++++++.+....|+||
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTS-SNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----C-TTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCch-HHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 57999999999999999999986 789999999976543222 2466889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCC---CCeEEeeccCceecCC
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDK---FEAHVGDFGLAKVIDM 964 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~---~~~kl~DfG~a~~~~~ 964 (1114)
||+++|+|.+.+... ..+++..+..++.|+++||+|||+. +|+||||||+||+++.. +.+||+|||+++....
T Consensus 116 e~~~~g~L~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~ 191 (494)
T 3lij_A 116 ECYKGGELFDEIIHR-MKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFEN 191 (494)
T ss_dssp ECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBT
T ss_pred ecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeECCC
Confidence 999999999988643 4689999999999999999999999 99999999999999764 4599999999987653
Q ss_pred CCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccc
Q 001253 965 PQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARL 1044 (1114)
Q Consensus 965 ~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1044 (1114)
.......+||+.|+|||++. ..++.++||||+||++|+|++|+.||..... ....+..... .+
T Consensus 192 --~~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~----~~~~~~i~~~-~~--------- 254 (494)
T 3lij_A 192 --QKKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTD----QEILRKVEKG-KY--------- 254 (494)
T ss_dssp --TBCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHHT-CC---------
T ss_pred --CccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHhC-CC---------
Confidence 23344567999999999876 4699999999999999999999999975332 2222222221 11
Q ss_pred cCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1045 NLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1045 ~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.............+.+++.+||+.||.+|||+.|+++
T Consensus 255 ~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~ 291 (494)
T 3lij_A 255 TFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291 (494)
T ss_dssp CCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCchhcccCCHHHHHHHHHHCCCChhhCccHHHHhc
Confidence 0011111122346889999999999999999999985
No 227
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=1.4e-36 Score=335.25 Aligned_cols=250 Identities=25% Similarity=0.375 Sum_probs=198.0
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|+++ +|+.||||++...........+.+.+|+..++.++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 468999999999999999999987 7999999999765332233456788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++++|.+++... ..+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+|||++......
T Consensus 90 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~- 164 (276)
T 2h6d_A 90 MEYVSGGELFDYICKH-GRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDG- 164 (276)
T ss_dssp EECCCSCBHHHHHHHH-CSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--
T ss_pred EeccCCCcHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccCCC-
Confidence 9999999999999743 4689999999999999999999999 9999999999999999999999999999875422
Q ss_pred CCccccccccccccCccccccCCC-CcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccccc
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLN 1045 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~-~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1114)
.......|++.|+|||.+.+..+ +.++||||+|+++|+|++|+.||.... .....+..... .. .
T Consensus 165 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~----~~~~~~~~~~~-~~---------~ 229 (276)
T 2h6d_A 165 -EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH----VPTLFKKIRGG-VF---------Y 229 (276)
T ss_dssp -------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHC-CC---------C
T ss_pred -cceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCc----HHHHHHHhhcC-cc---------c
Confidence 22334578999999999987765 689999999999999999999996432 22222221111 10 0
Q ss_pred CCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1046 LQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1046 ~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.+......+.+++.+||+.||++|||++|+++
T Consensus 230 ----~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 230 ----IPEYLNRSVATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp ----CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred ----CchhcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence 01112245788999999999999999999987
No 228
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=6.5e-37 Score=367.47 Aligned_cols=253 Identities=25% Similarity=0.326 Sum_probs=202.4
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCC----------hhhHHHHHHHHHHHhcCCCCceeeEEeE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGN----------NNVDNSFRAEILTLGKIRHRNIVKLYGF 876 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~----------~~~~~~~~~E~~~l~~l~h~niv~l~~~ 876 (1114)
.++|++.++||+|+||+||+|+.+ +++.||||++....... ....+.+.+|+.++++++||||++++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 478999999999999999999986 68899999997654321 1335678899999999999999999999
Q ss_pred EEecCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC---CeEE
Q 001253 877 CYHQGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF---EAHV 953 (1114)
Q Consensus 877 ~~~~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~kl 953 (1114)
+.++...|+||||+++|+|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++ .+||
T Consensus 115 ~~~~~~~~lv~e~~~gg~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl 190 (504)
T 3q5i_A 115 FEDKKYFYLVTEFYEGGELFEQIINR-HKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLNIKI 190 (504)
T ss_dssp EECSSEEEEEEECCTTCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSSEEE
T ss_pred EEcCCEEEEEEecCCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCccEEE
Confidence 99999999999999999999988643 4689999999999999999999999 999999999999998776 6999
Q ss_pred eeccCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcC
Q 001253 954 GDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNN 1033 (1114)
Q Consensus 954 ~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 1033 (1114)
+|||+++.... ........||+.|+|||++. ..++.++||||+||++|+|++|+.||.... ....+......
T Consensus 191 ~Dfg~a~~~~~--~~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~~~~i~~~- 262 (504)
T 3q5i_A 191 VDFGLSSFFSK--DYKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQN----DQDIIKKVEKG- 262 (504)
T ss_dssp CCCTTCEECCT--TSCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHC-
T ss_pred EECCCCEEcCC--CCccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHcC-
Confidence 99999987643 23345567999999999887 469999999999999999999999997533 22222222221
Q ss_pred CcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1034 SLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.+. ............+.+++.+||++||.+|||++|+++
T Consensus 263 ~~~---------~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~ 301 (504)
T 3q5i_A 263 KYY---------FDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN 301 (504)
T ss_dssp CCC---------CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCC---------CCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 110 000001112346889999999999999999999975
No 229
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=5.2e-37 Score=366.78 Aligned_cols=252 Identities=24% Similarity=0.344 Sum_probs=203.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.++||+|+||+||+|+.+ +++.||||++....... .....+.+|+.++++++||||+++++++.+....|+|
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN-KDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBC-SCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccc-hHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 367999999999999999999986 78999999997543222 2256788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEEC---CCCCeEEeeccCceecC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLD---DKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~---~~~~~kl~DfG~a~~~~ 963 (1114)
|||+++|+|.+.+... ..+++..+..++.|++.||+|||+. +|+||||||+||+++ .++.+||+|||+++...
T Consensus 100 ~e~~~~~~L~~~~~~~-~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 175 (486)
T 3mwu_A 100 GELYTGGELFDEIIKR-KRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175 (486)
T ss_dssp ECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBC
T ss_pred EEcCCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeECC
Confidence 9999999999988643 4789999999999999999999999 999999999999995 45679999999998654
Q ss_pred CCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDAR 1043 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
. .......+||+.|+|||++.+ .++.++||||+||++|+|++|+.||.... .....+.... +.+
T Consensus 176 ~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~~~~i~~-~~~-------- 239 (486)
T 3mwu_A 176 Q--NTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN----EYDILKRVET-GKY-------- 239 (486)
T ss_dssp C--C----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHH-TCC--------
T ss_pred C--CCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCC----HHHHHHHHHh-CCC--------
Confidence 2 233345679999999999876 59999999999999999999999997533 2222222222 111
Q ss_pred ccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1044 LNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1044 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
....+........+.+++.+||+.||++|||+.|+++
T Consensus 240 -~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~ 276 (486)
T 3mwu_A 240 -AFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (486)
T ss_dssp -CSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred -CCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 1111111223356889999999999999999999987
No 230
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=8.6e-37 Score=351.67 Aligned_cols=259 Identities=23% Similarity=0.296 Sum_probs=194.9
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC------
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG------ 881 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 881 (1114)
++|++.+.||+|+||+||+|+.. +++.||||++..... .....+.+.+|+.+++.++||||+++++++...+
T Consensus 25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQ-NQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccC-ChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 68999999999999999999976 789999999976543 3344567889999999999999999999997655
Q ss_pred ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 882 SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
..|+||||+++ +|.+.+. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 104 ~~~lv~e~~~~-~l~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~ 176 (371)
T 2xrw_A 104 DVYIVMELMDA-NLCQVIQ---MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLART 176 (371)
T ss_dssp EEEEEEECCSE-EHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC---
T ss_pred ceEEEEEcCCC-CHHHHHh---hccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeecccc
Confidence 67999999986 7888886 3589999999999999999999999 999999999999999999999999999986
Q ss_pred cCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhc---------
Q 001253 962 IDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRN--------- 1032 (1114)
Q Consensus 962 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~--------- 1032 (1114)
... ........||+.|+|||++.+..++.++||||+||++|||++|+.||..... ...+......
T Consensus 177 ~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~----~~~~~~i~~~~~~~~~~~~ 250 (371)
T 2xrw_A 177 AGT--SFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDH----IDQWNKVIEQLGTPCPEFM 250 (371)
T ss_dssp ---------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHHHHC-CCCCCHHHH
T ss_pred ccc--ccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHHHhCCCCHHHH
Confidence 542 2233456799999999999999999999999999999999999999975432 1122211111
Q ss_pred -------------CCccc-----ccccc-cccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1033 -------------NSLVS-----GMLDA-RLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1033 -------------~~~~~-----~~~~~-~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
..... ..... ...............+.+++.+||+.||++|||++|+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~ 318 (371)
T 2xrw_A 251 KKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQ 318 (371)
T ss_dssp TTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhC
Confidence 00000 00000 000001112233567899999999999999999999986
No 231
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=5.3e-37 Score=343.72 Aligned_cols=250 Identities=24% Similarity=0.316 Sum_probs=203.3
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|+.+ +|+.||+|++....... .+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~---~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFR---DSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLV 84 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC---------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccc---hHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEE
Confidence 467999999999999999999986 78999999997544322 45688999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEE---CCCCCeEEeeccCceecC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILL---DDKFEAHVGDFGLAKVID 963 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~DfG~a~~~~ 963 (1114)
|||+++++|.+++... ..+++..+..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++...
T Consensus 85 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 160 (304)
T 2jam_A 85 MQLVSGGELFDRILER-GVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ 160 (304)
T ss_dssp ECCCCSCBHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC
T ss_pred EEcCCCccHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecC
Confidence 9999999999998643 4689999999999999999999999 99999999999999 788999999999997543
Q ss_pred CCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccccc
Q 001253 964 MPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDAR 1043 (1114)
Q Consensus 964 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1114)
........|++.|+|||++.+..++.++||||+|+++|||++|+.||.... ........... ..
T Consensus 161 ---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----~~~~~~~i~~~-~~-------- 224 (304)
T 2jam_A 161 ---NGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEET----ESKLFEKIKEG-YY-------- 224 (304)
T ss_dssp ---CBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSC----HHHHHHHHHHC-CC--------
T ss_pred ---CCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC----HHHHHHHHHcC-CC--------
Confidence 222344579999999999999999999999999999999999999996432 22222222211 11
Q ss_pred ccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1044 LNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1044 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.............+.+++.+||+.||++|||+.|+++
T Consensus 225 -~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 225 -EFESPFWDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp -CCCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred -CCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0001111122346889999999999999999999986
No 232
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=7.3e-37 Score=340.18 Aligned_cols=249 Identities=24% Similarity=0.363 Sum_probs=200.3
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe----cCce
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH----QGSN 883 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~ 883 (1114)
+.|++.+.||+|+||+||+|.+. ++..||+|++...... ....+.+.+|+.+++.++||||+++++++.. ....
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 104 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLT-KSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCI 104 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhC-HHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceE
Confidence 45788889999999999999976 6889999999765443 3446778899999999999999999999875 3457
Q ss_pred EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEecCCCCCCeEEC-CCCCeEEeeccCce
Q 001253 884 LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPR--IFHRDIKSNNILLD-DKFEAHVGDFGLAK 960 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~Nill~-~~~~~kl~DfG~a~ 960 (1114)
++||||+++|+|.+++... ..+++..+..++.|++.||+|||+. + |+||||||+||+++ +++.+||+|||++.
T Consensus 105 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~ 180 (290)
T 1t4h_A 105 VLVTELMTSGTLKTYLKRF-KVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT 180 (290)
T ss_dssp EEEEECCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred EEEEEecCCCCHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCCcc
Confidence 9999999999999999743 5689999999999999999999998 7 99999999999998 78999999999997
Q ss_pred ecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 961 VIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 961 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
... ........|++.|+|||++.+ .++.++||||+|+++|+|++|+.||..... ....... ......
T Consensus 181 ~~~---~~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~---~~~~~~~-~~~~~~----- 247 (290)
T 1t4h_A 181 LKR---ASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN---AAQIYRR-VTSGVK----- 247 (290)
T ss_dssp GCC---TTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS---HHHHHHH-HTTTCC-----
T ss_pred ccc---ccccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCc---HHHHHHH-HhccCC-----
Confidence 543 223345579999999998764 589999999999999999999999975432 2222222 111110
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.. ..+......+.+++.+||+.||.+|||++|+++
T Consensus 248 ~~------~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 248 PA------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp CG------GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cc------ccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 00 011111246889999999999999999999875
No 233
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=3.6e-37 Score=354.31 Aligned_cols=274 Identities=21% Similarity=0.254 Sum_probs=202.9
Q ss_pred HHHHHHHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCC--------hhhHHHHHHHHHHHhcCCCCceee
Q 001253 801 FKDLVVATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGN--------NNVDNSFRAEILTLGKIRHRNIVK 872 (1114)
Q Consensus 801 ~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~ 872 (1114)
++++....++|++.+.||+|+||+||+|+..+|+.||||++....... ....+.+.+|+.++++++||||++
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~ 93 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG 93 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence 456677889999999999999999999998889999999997654332 122367899999999999999999
Q ss_pred EEeEEEec-----CceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC
Q 001253 873 LYGFCYHQ-----GSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD 947 (1114)
Q Consensus 873 l~~~~~~~-----~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~ 947 (1114)
+++++... ...|+||||++ |+|.+++......+++..+..++.|++.||+|||+. +|+||||||+||+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~ 169 (362)
T 3pg1_A 94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNILLAD 169 (362)
T ss_dssp CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECT
T ss_pred eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHEEEcC
Confidence 99998543 35799999998 589998886777899999999999999999999999 9999999999999999
Q ss_pred CCCeEEeeccCceecCCCCCCccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 001253 948 KFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWV 1026 (1114)
Q Consensus 948 ~~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~ 1026 (1114)
++.+||+|||+++... .........||+.|+|||++.+ ..++.++||||+||++|+|++|+.||......... ..+
T Consensus 170 ~~~~kl~Dfg~~~~~~--~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~-~~i 246 (362)
T 3pg1_A 170 NNDITICDFNLAREDT--ADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQL-NKI 246 (362)
T ss_dssp TCCEEECCTTC-----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH-HHH
T ss_pred CCCEEEEecCcccccc--cccccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHH-HHH
Confidence 9999999999998543 2223345579999999999877 67899999999999999999999999754321111 111
Q ss_pred HHHHhcCCccc----------ccccccccCCC-----cccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1027 RNFIRNNSLVS----------GMLDARLNLQD-----EKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1027 ~~~~~~~~~~~----------~~~~~~~~~~~-----~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
........... ........... .........+.+++.+||+.||++|||+.|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 247 VEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp HHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 11111110000 00000000000 011122346889999999999999999999986
No 234
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=351.62 Aligned_cols=264 Identities=24% Similarity=0.303 Sum_probs=192.9
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-CCceeeEEeEEEe----
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-HRNIVKLYGFCYH---- 879 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~---- 879 (1114)
....+|++.++||+|+||+||+|++. +++.||||++.... ....+.+.+|+.+++++. ||||+++++++..
T Consensus 25 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~ 101 (337)
T 3ll6_A 25 LGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNE---EEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEE 101 (337)
T ss_dssp ETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESS---HHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTT
T ss_pred ccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCc---hHHHHHHHHHHHHHHHhccCCChhhccccccccccc
Confidence 44578999999999999999999975 78999999986543 234567889999999996 9999999999953
Q ss_pred ----cCceEEEEecCCCCCHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC--eEecCCCCCCeEECCCCCe
Q 001253 880 ----QGSNLLMYEYMARGSLGELLHG--ASSTLDWQTRFMIALGAAEGLSYLHHDCKPR--IFHRDIKSNNILLDDKFEA 951 (1114)
Q Consensus 880 ----~~~~~lv~E~~~~gsL~~~l~~--~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~--ivH~Dlk~~Nill~~~~~~ 951 (1114)
....++||||++ |+|.+++.. ....+++..+..++.|++.||+|||+. + |+||||||+||+++.++.+
T Consensus 102 ~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~ 177 (337)
T 3ll6_A 102 SDTGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTI 177 (337)
T ss_dssp STTSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCE
T ss_pred cccCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCE
Confidence 334789999996 599998864 345799999999999999999999998 7 9999999999999999999
Q ss_pred EEeeccCceecCCCCCC-----------ccccccccccccCcccc---ccCCCCcccchHHHHHHHHHHHhCCCCCCCCC
Q 001253 952 HVGDFGLAKVIDMPQSK-----------SMSAIAGSYGYIAPEYA---YTMKVTEKCDIYSYGVVLLELLTGRAPVQPLD 1017 (1114)
Q Consensus 952 kl~DfG~a~~~~~~~~~-----------~~~~~~g~~~y~aPE~~---~~~~~~~~~DvwslGvil~el~tg~~p~~~~~ 1017 (1114)
||+|||+++........ ......||+.|+|||++ .+..++.++|||||||++|||++|+.||....
T Consensus 178 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~ 257 (337)
T 3ll6_A 178 KLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGA 257 (337)
T ss_dssp EBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred EEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchh
Confidence 99999999876432221 11245699999999998 56778899999999999999999999996432
Q ss_pred CCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCcccc
Q 001253 1018 QGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHFEFS 1096 (1114)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~~~~ 1096 (1114)
.. ..... .... .........+.+++.+||+.||++|||+.|+++.|+++..........
T Consensus 258 ~~----~~~~~--------------~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~~~~~~ 316 (337)
T 3ll6_A 258 KL----RIVNG--------------KYSI--PPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARNVNPKS 316 (337)
T ss_dssp --------------------------CCC--CTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTTCCTTS
T ss_pred HH----HhhcC--------------cccC--CcccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccCCCCCc
Confidence 21 11111 0000 000011124778999999999999999999999999997765544333
No 235
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=5e-37 Score=340.38 Aligned_cols=250 Identities=24% Similarity=0.400 Sum_probs=205.5
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe------
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH------ 879 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------ 879 (1114)
..++|++.+.||+|+||+||+|++. +++.||+|++.... +.+.+|+.++++++||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~ 81 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-------EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPE 81 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS-------GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC--
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc-------HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcc
Confidence 3467999999999999999999987 79999999997543 235689999999999999999999864
Q ss_pred ----------cCceEEEEecCCCCCHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCC
Q 001253 880 ----------QGSNLLMYEYMARGSLGELLHGA-SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDK 948 (1114)
Q Consensus 880 ----------~~~~~lv~E~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~ 948 (1114)
....++||||+++|+|.++++.. ...+++..+..++.|+++||+|||+. +|+||||||+||+++++
T Consensus 82 ~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~ 158 (284)
T 2a19_B 82 TSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDT 158 (284)
T ss_dssp -------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEET
T ss_pred cccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCC
Confidence 34579999999999999999743 35789999999999999999999999 99999999999999999
Q ss_pred CCeEEeeccCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Q 001253 949 FEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRN 1028 (1114)
Q Consensus 949 ~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~ 1028 (1114)
+.+||+|||++...... .......|++.|+|||++.+..++.++||||+|+++|||++|..|+... ......
T Consensus 159 ~~~kl~Dfg~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~------~~~~~~ 230 (284)
T 2a19_B 159 KQVKIGDFGLVTSLKND--GKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET------SKFFTD 230 (284)
T ss_dssp TEEEECCCTTCEESSCC--SCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH------HHHHHH
T ss_pred CCEEECcchhheecccc--ccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH------HHHHHH
Confidence 99999999999876532 2234457999999999999999999999999999999999999886421 111111
Q ss_pred HHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccC
Q 001253 1029 FIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQ 1090 (1114)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~ 1090 (1114)
...... . .. ....+.+++.+||+.||++|||+.|+++.|+.+....
T Consensus 231 -~~~~~~-----~------~~----~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~ 276 (284)
T 2a19_B 231 -LRDGII-----S------DI----FDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSP 276 (284)
T ss_dssp -HHTTCC-----C------TT----SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC--
T ss_pred -hhcccc-----c------cc----CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCC
Confidence 111110 0 11 1235778999999999999999999999999986653
No 236
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=1.3e-36 Score=360.85 Aligned_cols=195 Identities=27% Similarity=0.411 Sum_probs=156.2
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEec-----Cc
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQ-----GS 882 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 882 (1114)
++|++.++||+|+||+||+|+++ +|+.||||++..... .....+.+.+|+.++++++||||+++++++... ..
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFE-DLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhc-CHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 68999999999999999999976 789999999975443 333456788999999999999999999998543 46
Q ss_pred eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 883 NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
.|+||||++ |+|.+++.. ...+++..+..++.||++||+|||+. +|+||||||+|||++.++.+||+|||+|+..
T Consensus 132 ~~lv~e~~~-~~L~~~~~~-~~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~~~ 206 (458)
T 3rp9_A 132 LYVVLEIAD-SDFKKLFRT-PVYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLARTV 206 (458)
T ss_dssp EEEEECCCS-EEHHHHHHS-SCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCT
T ss_pred EEEEEeccc-cchhhhccc-CCCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccchhc
Confidence 899999985 599999974 45799999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCC--------------------------CccccccccccccCcccc-ccCCCCcccchHHHHHHHHHHHhC
Q 001253 963 DMPQS--------------------------KSMSAIAGSYGYIAPEYA-YTMKVTEKCDIYSYGVVLLELLTG 1009 (1114)
Q Consensus 963 ~~~~~--------------------------~~~~~~~g~~~y~aPE~~-~~~~~~~~~DvwslGvil~el~tg 1009 (1114)
..... ......+||+.|+|||++ .+..++.++||||+||++|||++|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 207 DYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp TSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred cCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 43221 123456789999999986 566799999999999999999993
No 237
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=337.18 Aligned_cols=251 Identities=25% Similarity=0.379 Sum_probs=198.4
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
++|....+||+|+||+||+|++. +++.||||++..... ...+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~---~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 98 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDS---RYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFM 98 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC------HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCch---HHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEE
Confidence 44566679999999999999975 688999999976533 23567889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC-CCCeEEeeccCceecCC
Q 001253 888 EYMARGSLGELLHGAS--STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD-KFEAHVGDFGLAKVIDM 964 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~--~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~-~~~~kl~DfG~a~~~~~ 964 (1114)
||+++++|.+++.... ..+++..+..++.|++.||+|||+. +++||||||+||+++. ++.+||+|||.++....
T Consensus 99 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~ 175 (295)
T 2clq_A 99 EQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAG 175 (295)
T ss_dssp ECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC
T ss_pred EeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccCC
Confidence 9999999999997543 3567889999999999999999999 9999999999999987 89999999999987643
Q ss_pred CCCCccccccccccccCccccccCC--CCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccc
Q 001253 965 PQSKSMSAIAGSYGYIAPEYAYTMK--VTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDA 1042 (1114)
Q Consensus 965 ~~~~~~~~~~g~~~y~aPE~~~~~~--~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1114)
. ........|++.|+|||++.+.. ++.++||||||+++|||++|+.||....... ....+...... .
T Consensus 176 ~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~~~~~~~~~-------~- 244 (295)
T 2clq_A 176 I-NPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQ--AAMFKVGMFKV-------H- 244 (295)
T ss_dssp ------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHH--HHHHHHHHHCC-------C-
T ss_pred C-CCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchh--HHHHhhccccc-------c-
Confidence 2 22234557999999999987644 7899999999999999999999996433211 11111111100 0
Q ss_pred cccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1043 RLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1043 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
...+......+.+++.+||+.||++||++.|+++
T Consensus 245 -----~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 245 -----PEIPESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp -----CCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred -----ccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 1111122346789999999999999999999875
No 238
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=2.1e-37 Score=342.55 Aligned_cols=255 Identities=23% Similarity=0.380 Sum_probs=204.9
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe--cCceEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH--QGSNLL 885 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~l 885 (1114)
++|++.+.||+|+||+||+|+.+ +|+.||+|++...... ....+.+.+|+.++++++||||+++++++.+ ....++
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMT-EAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCC-HHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 67999999999999999999986 7899999999765432 3446678899999999999999999998854 567899
Q ss_pred EEecCCCCCHHHHhccC---CCCCCHHHHHHHHHHHHHHHHHHHhCCCCC-----eEecCCCCCCeEECCCCCeEEeecc
Q 001253 886 MYEYMARGSLGELLHGA---SSTLDWQTRFMIALGAAEGLSYLHHDCKPR-----IFHRDIKSNNILLDDKFEAHVGDFG 957 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~---~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~-----ivH~Dlk~~Nill~~~~~~kl~DfG 957 (1114)
||||+++++|.+++... ...+++..+..++.|++.||+|||+. + ++||||||+||+++.++.+||+|||
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg 161 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 161 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence 99999999999999642 34589999999999999999999998 7 9999999999999999999999999
Q ss_pred CceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccc
Q 001253 958 LAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVS 1037 (1114)
Q Consensus 958 ~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1114)
.++..... ........|++.|+|||++.+..++.++||||+|+++|||++|+.||..... ...... +..+...
T Consensus 162 ~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~-i~~~~~~- 234 (279)
T 2w5a_A 162 LARILNHD-TSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ----KELAGK-IREGKFR- 234 (279)
T ss_dssp HHHHC----CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHH-HHHTCCC-
T ss_pred hheeeccc-cccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH----HHHHHH-Hhhcccc-
Confidence 99865422 1222345789999999999998999999999999999999999999975431 222222 2221110
Q ss_pred ccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHh
Q 001253 1038 GMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSE 1085 (1114)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~ 1085 (1114)
..+......+.+++.+||+.||++||++.|+++.+..
T Consensus 235 -----------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~ 271 (279)
T 2w5a_A 235 -----------RIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLI 271 (279)
T ss_dssp -----------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred -----------cCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhh
Confidence 0111223468899999999999999999999986544
No 239
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.2e-36 Score=352.25 Aligned_cols=262 Identities=21% Similarity=0.245 Sum_probs=197.1
Q ss_pred HHHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEec---
Q 001253 805 VVATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQ--- 880 (1114)
Q Consensus 805 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--- 880 (1114)
....++|++.++||+|+||+||+|++. +|+.||||++...... ..+|+.+++.++||||+++++++...
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~-------~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 75 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY-------KNRELDIMKVLDHVNIIKLVDYFYTTGDE 75 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS-------CCHHHHHHTTCCCTTBCCEEEEEEEC---
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch-------HHHHHHHHHHcCCCCccchhheeeecCcc
Confidence 345688999999999999999999975 7999999998755332 23699999999999999999998543
Q ss_pred -----------------------------------CceEEEEecCCCCCHHHHhc---cCCCCCCHHHHHHHHHHHHHHH
Q 001253 881 -----------------------------------GSNLLMYEYMARGSLGELLH---GASSTLDWQTRFMIALGAAEGL 922 (1114)
Q Consensus 881 -----------------------------------~~~~lv~E~~~~gsL~~~l~---~~~~~l~~~~~~~i~~~i~~~L 922 (1114)
...++||||+++ +|.+.+. .....+++..+..++.|+++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL 154 (383)
T 3eb0_A 76 EPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAV 154 (383)
T ss_dssp ----------------------------------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 337899999985 8877765 2456899999999999999999
Q ss_pred HHHHhCCCCCeEecCCCCCCeEEC-CCCCeEEeeccCceecCCCCCCccccccccccccCccccccC-CCCcccchHHHH
Q 001253 923 SYLHHDCKPRIFHRDIKSNNILLD-DKFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSYG 1000 (1114)
Q Consensus 923 ~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~DvwslG 1000 (1114)
+|||+. +|+||||||+||+++ .++.+||+|||+|+.... ........||+.|+|||++.+. .++.++||||+|
T Consensus 155 ~~LH~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~--~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG 229 (383)
T 3eb0_A 155 GFIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIP--SEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIG 229 (383)
T ss_dssp HHHHTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCT--TSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHH
T ss_pred HHHHHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCC--CCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHH
Confidence 999998 999999999999997 688999999999987642 2233455789999999998765 489999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhc----------CCcccccccccccCCC---cccHHHHHHHHHHHhhccC
Q 001253 1001 VVLLELLTGRAPVQPLDQGGDLVTWVRNFIRN----------NSLVSGMLDARLNLQD---EKTVSHMITVLKIAMLCTN 1067 (1114)
Q Consensus 1001 vil~el~tg~~p~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~---~~~~~~~~~l~~li~~cl~ 1067 (1114)
|++|||++|+.||......+.+...++. ... ..+.... -+...... ..+......+.+++.+||+
T Consensus 230 ~il~ell~g~~pf~~~~~~~~~~~i~~~-~g~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~L~ 307 (383)
T 3eb0_A 230 CVFGELILGKPLFSGETSIDQLVRIIQI-MGTPTKEQMIRMNPHYTEVR-FPTLKAKDWRKILPEGTPSLAIDLLEQILR 307 (383)
T ss_dssp HHHHHHHHSSCSSCCSSHHHHHHHHHHH-HCCCCHHHHHHHCTTC--CC-CCCCCCCCHHHHSCTTCCHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCCCCChHHHHHHHHHH-hCCCCHHHHHHhCccccccc-CCccCcccHHhhCCCCCCHHHHHHHHHHcc
Confidence 9999999999999754432222222211 110 0000000 00000000 0111233468899999999
Q ss_pred CCCCCCCCHHHHHH
Q 001253 1068 ISPFDRPTMREVVL 1081 (1114)
Q Consensus 1068 ~dP~~RPs~~evl~ 1081 (1114)
.||++|||+.|+++
T Consensus 308 ~dP~~R~t~~e~l~ 321 (383)
T 3eb0_A 308 YEPDLRINPYEAMA 321 (383)
T ss_dssp SSGGGSCCHHHHHT
T ss_pred CChhhCCCHHHHhc
Confidence 99999999999984
No 240
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=3e-36 Score=354.03 Aligned_cols=200 Identities=29% Similarity=0.394 Sum_probs=168.8
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEec-----C
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQ-----G 881 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~ 881 (1114)
.++|++.++||+|+||+||+|+++ +|+.||||++..... .....+.+.+|+.++++++||||+++++++... .
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 103 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFE-DLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD 103 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTT-SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhc-ChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence 368999999999999999999976 688999999975533 333456788999999999999999999999776 5
Q ss_pred ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 882 SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
..|+||||+++ +|.++++. ...+++..+..++.|+++||+|||+. +|+||||||+|||++.++.+||+|||+|+.
T Consensus 104 ~~~lv~e~~~~-~L~~~~~~-~~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla~~ 178 (432)
T 3n9x_A 104 ELYIVLEIADS-DLKKLFKT-PIFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLART 178 (432)
T ss_dssp CEEEEEECCSE-EHHHHHHS-SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred eEEEEEecCCc-CHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCccc
Confidence 68999999975 99999974 45799999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCC---------------------CccccccccccccCcccc-ccCCCCcccchHHHHHHHHHHHhCCCCC
Q 001253 962 IDMPQS---------------------KSMSAIAGSYGYIAPEYA-YTMKVTEKCDIYSYGVVLLELLTGRAPV 1013 (1114)
Q Consensus 962 ~~~~~~---------------------~~~~~~~g~~~y~aPE~~-~~~~~~~~~DvwslGvil~el~tg~~p~ 1013 (1114)
...... ......+||+.|+|||++ ....++.++||||+||++|||++|..||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~ 252 (432)
T 3n9x_A 179 INSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH 252 (432)
T ss_dssp C-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence 643221 123567899999999986 5667999999999999999999865444
No 241
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=7.1e-37 Score=374.43 Aligned_cols=250 Identities=24% Similarity=0.369 Sum_probs=200.1
Q ss_pred ceecccCCeEEEEEEeC---CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEEEecCC
Q 001253 815 FVIGRGACGTVYRAVLR---TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLMYEYMA 891 (1114)
Q Consensus 815 ~~lG~G~~g~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~E~~~ 891 (1114)
++||+|+||+||+|.++ +++.||||+++.... .....+++.+|+.++++++|||||++++++.. +..++||||++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~-~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~ 452 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEAN-DPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAE 452 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGG-CGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccC
Confidence 47999999999999753 567899999976543 23345779999999999999999999999964 56889999999
Q ss_pred CCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCC--Cc
Q 001253 892 RGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQS--KS 969 (1114)
Q Consensus 892 ~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~--~~ 969 (1114)
+|+|.++++. ...+++..+..++.||+.||+|||+. +|+||||||+|||++.++.+||+|||+|+.+..... ..
T Consensus 453 ~g~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~ 528 (635)
T 4fl3_A 453 LGPLNKYLQQ-NRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKA 528 (635)
T ss_dssp TEEHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------
T ss_pred CCCHHHHHhh-CCCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcccccc
Confidence 9999999974 45789999999999999999999999 999999999999999999999999999987643322 22
Q ss_pred cccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccCCC
Q 001253 970 MSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQD 1048 (1114)
Q Consensus 970 ~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1114)
.....+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... . .+...+..+.. .
T Consensus 529 ~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~----~-~~~~~i~~~~~------------~ 591 (635)
T 4fl3_A 529 QTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG----S-EVTAMLEKGER------------M 591 (635)
T ss_dssp ------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH----H-HHHHHHHTTCC------------C
T ss_pred ccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH----H-HHHHHHHcCCC------------C
Confidence 233457889999999999999999999999999999998 9999975432 1 12222222111 0
Q ss_pred cccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhh
Q 001253 1049 EKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESN 1087 (1114)
Q Consensus 1049 ~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~ 1087 (1114)
..+......+.++|.+||+.||++||++++|++.|+++.
T Consensus 592 ~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~ 630 (635)
T 4fl3_A 592 GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY 630 (635)
T ss_dssp CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 111223356889999999999999999999999999874
No 242
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=1.6e-36 Score=348.47 Aligned_cols=201 Identities=28% Similarity=0.476 Sum_probs=176.6
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|+++ +++.||+|++.... .....+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 109 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEI--KPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISIC 109 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCC--CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEecccc--CHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEE
Confidence 468999999999999999999987 78999999997653 334467789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++++|.++++.. ..+++..+..++.|++.||+|||+.. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 110 ~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 185 (360)
T 3eqc_A 110 MEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS- 185 (360)
T ss_dssp ECCCTTCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH-
T ss_pred EECCCCCCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCCCcccccc-
Confidence 9999999999999743 46899999999999999999999831 7999999999999999999999999999754321
Q ss_pred CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCC
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPL 1016 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~ 1016 (1114)
......||+.|+|||++.+..++.++||||+||++|||++|+.||...
T Consensus 186 --~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 233 (360)
T 3eqc_A 186 --MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP 233 (360)
T ss_dssp --C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred --cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 223457999999999999999999999999999999999999999753
No 243
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=3.2e-37 Score=345.25 Aligned_cols=252 Identities=23% Similarity=0.363 Sum_probs=200.1
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|+++ +++.||+|++...... ..+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~---~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 94 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEE---ELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIM 94 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----C---CHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHH---HHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEE
Confidence 378999999999999999999987 6899999998755332 256788999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++++|.+++......+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++......
T Consensus 95 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 170 (302)
T 2j7t_A 95 IEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT- 170 (302)
T ss_dssp EECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH-
T ss_pred EEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCcccccc-
Confidence 999999999999876667899999999999999999999999 9999999999999999999999999987643211
Q ss_pred CCccccccccccccCccccc-----cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccccc
Q 001253 967 SKSMSAIAGSYGYIAPEYAY-----TMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLD 1041 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~-----~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1114)
........|++.|+|||++. +..++.++||||+|+++|||++|+.||..... .............
T Consensus 171 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~~~~~~------ 240 (302)
T 2j7t_A 171 LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP----MRVLLKIAKSDPP------ 240 (302)
T ss_dssp HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHHHHSCCC------
T ss_pred ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCH----HHHHHHHhccCCc------
Confidence 11123456899999999883 66788999999999999999999999975432 2222222221110
Q ss_pred ccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1042 ARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1042 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
. ...+......+.+++.+||+.||++|||+.|+++
T Consensus 241 -~----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 241 -T----LLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp -C----CSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred -c----cCCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 0 0011122346889999999999999999999875
No 244
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=8.5e-37 Score=349.31 Aligned_cols=263 Identities=19% Similarity=0.267 Sum_probs=206.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhh--------------HHHHHHHHHHHhcCCCCceeeE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNV--------------DNSFRAEILTLGKIRHRNIVKL 873 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~--------------~~~~~~E~~~l~~l~h~niv~l 873 (1114)
.++|++.+.||+|+||+||+|++ +|+.||||++.......... .+.+.+|+.++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 36899999999999999999999 89999999997654322211 1778999999999999999999
Q ss_pred EeEEEecCceEEEEecCCCCCHHHH------hccC-CCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCCeEE
Q 001253 874 YGFCYHQGSNLLMYEYMARGSLGEL------LHGA-SSTLDWQTRFMIALGAAEGLSYLHH-DCKPRIFHRDIKSNNILL 945 (1114)
Q Consensus 874 ~~~~~~~~~~~lv~E~~~~gsL~~~------l~~~-~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlk~~Nill 945 (1114)
++++.+.+..++||||+++|+|.++ +... ...+++..+..++.|++.||+|||+ . +++||||||+||++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNILM 185 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEEE
Confidence 9999999999999999999999998 6532 5689999999999999999999998 7 99999999999999
Q ss_pred CCCCCeEEeeccCceecCCCCCCccccccccccccCccccccC-CCCc-ccchHHHHHHHHHHHhCCCCCCCCCCCCCHH
Q 001253 946 DDKFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTM-KVTE-KCDIYSYGVVLLELLTGRAPVQPLDQGGDLV 1023 (1114)
Q Consensus 946 ~~~~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~-~~DvwslGvil~el~tg~~p~~~~~~~~~~~ 1023 (1114)
+.++.+||+|||.+...... ......|++.|+|||++.+. .++. ++||||+|+++|||++|+.||.......
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--- 259 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK---KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLV--- 259 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT---EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSH---
T ss_pred cCCCcEEEeccccccccccc---cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHH---
Confidence 99999999999999875422 33456799999999999877 6666 9999999999999999999997554322
Q ss_pred HHHHHHHhcCCcccccccccc-cCC-----CcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1024 TWVRNFIRNNSLVSGMLDARL-NLQ-----DEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
..... +.............. ... ..........+.+++.+||+.||.+|||+.|+++
T Consensus 260 ~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 260 ELFNN-IRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp HHHHH-HTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHH-HhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 22222 221111000000000 000 0000223346889999999999999999999886
No 245
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=2.2e-36 Score=354.31 Aligned_cols=198 Identities=25% Similarity=0.314 Sum_probs=172.4
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC------CCCceeeEEeEEEec
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI------RHRNIVKLYGFCYHQ 880 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~ 880 (1114)
..+|++.++||+|+||+||+|++. +++.||||++.... ...+.+.+|+.+++.+ .|+||+++++++...
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~----~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~ 171 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK----RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR 171 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc----chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC
Confidence 467999999999999999999976 68999999996432 2345667788877766 577999999999999
Q ss_pred CceEEEEecCCCCCHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCC--eEEeecc
Q 001253 881 GSNLLMYEYMARGSLGELLHGAS-STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFE--AHVGDFG 957 (1114)
Q Consensus 881 ~~~~lv~E~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~--~kl~DfG 957 (1114)
+..++||||++ ++|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+|||++.++. +||+|||
T Consensus 172 ~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG 247 (429)
T 3kvw_A 172 NHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFG 247 (429)
T ss_dssp TEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCT
T ss_pred CeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeecc
Confidence 99999999997 58999887544 4699999999999999999999999 9999999999999999987 9999999
Q ss_pred CceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCC
Q 001253 958 LAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLD 1017 (1114)
Q Consensus 958 ~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~ 1017 (1114)
+|+.... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||....
T Consensus 248 ~a~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~ 303 (429)
T 3kvw_A 248 SSCYEHQ----RVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGED 303 (429)
T ss_dssp TCEETTC----CCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred cceecCC----cccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCC
Confidence 9986432 2334579999999999999999999999999999999999999997654
No 246
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=6.7e-37 Score=376.11 Aligned_cols=260 Identities=24% Similarity=0.368 Sum_probs=208.7
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeC----CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLR----TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG 881 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~----~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 881 (1114)
+..++|++.+.||+|+||+||+|++. .+..||||++.... .....+.+.+|+.++++++||||+++++++. ++
T Consensus 387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~ 463 (656)
T 2j0j_A 387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCT--SDSVREKFLQEALTMRQFDHPHIVKLIGVIT-EN 463 (656)
T ss_dssp CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTT--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SS
T ss_pred cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccC--CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cC
Confidence 44578999999999999999999975 24579999986533 2344567899999999999999999999985 46
Q ss_pred ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 882 SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
..++||||+++|+|.++++.....+++..+..++.|+++||+|||+. +|+||||||+|||++.++.+||+|||+++.
T Consensus 464 ~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~ 540 (656)
T 2j0j_A 464 PVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRY 540 (656)
T ss_dssp SCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCS
T ss_pred ceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCee
Confidence 78999999999999999987666899999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 962 IDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 962 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
.............+|+.|+|||++.+..++.++|||||||++|||++ |..||..... .+........ ..
T Consensus 541 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~----~~~~~~i~~~-~~----- 610 (656)
T 2j0j_A 541 MEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN----NDVIGRIENG-ER----- 610 (656)
T ss_dssp CCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH----HHHHHHHHHT-CC-----
T ss_pred cCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCH----HHHHHHHHcC-CC-----
Confidence 65443333344567889999999999999999999999999999997 9999975432 2222221111 10
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhc
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNR 1088 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~ 1088 (1114)
. ..+......+.+++.+||+.||++|||+.|+++.|+++..
T Consensus 611 ---~----~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~ 651 (656)
T 2j0j_A 611 ---L----PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILE 651 (656)
T ss_dssp ---C----CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ---C----CCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 0 1111223468899999999999999999999999999854
No 247
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=1.7e-36 Score=337.01 Aligned_cols=245 Identities=22% Similarity=0.317 Sum_probs=198.5
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 885 (1114)
.++|++.+.||+|+||+||+|+++ +++.||+|++........ ....+.+|+..+..+ +||||+++++++.+++..++
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~-~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSV-DEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSH-HHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccH-HHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 467999999999999999999987 799999999986654433 355677899999888 99999999999999999999
Q ss_pred EEecCCCCCHHHHhccC---CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCC--------------
Q 001253 886 MYEYMARGSLGELLHGA---SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDK-------------- 948 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~---~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~-------------- 948 (1114)
||||+++++|.+++... ...+++..+..++.|+++||+|||+. +|+||||||+||+++.+
T Consensus 89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~ 165 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDD 165 (289)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC----------------
T ss_pred EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCccccccccccc
Confidence 99999999999999743 25689999999999999999999999 99999999999999844
Q ss_pred -----CCeEEeeccCceecCCCCCCccccccccccccCccccccC-CCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCH
Q 001253 949 -----FEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDL 1022 (1114)
Q Consensus 949 -----~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~ 1022 (1114)
..+||+|||.+....... ...||+.|+|||++.+. .++.++||||+||++|||++|.+|+... ..
T Consensus 166 ~~~~~~~~kl~Dfg~~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~----~~ 236 (289)
T 1x8b_A 166 WASNKVMFKIGDLGHVTRISSPQ-----VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG----DQ 236 (289)
T ss_dssp ----CCCEEECCCTTCEETTCSC-----CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS----HH
T ss_pred ccCCceEEEEcccccccccCCcc-----ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch----hH
Confidence 479999999998764322 23589999999999765 5668999999999999999998776422 11
Q ss_pred HHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1023 VTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
. .. +..+.. ...+......+.+++.+||+.||++|||+.|+++
T Consensus 237 ~---~~-~~~~~~------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 237 W---HE-IRQGRL------------PRIPQVLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp H---HH-HHTTCC------------CCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred H---HH-HHcCCC------------CCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 1 11 111111 0011112346889999999999999999999875
No 248
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=2.7e-37 Score=346.05 Aligned_cols=262 Identities=27% Similarity=0.387 Sum_probs=187.4
Q ss_pred HHHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce
Q 001253 805 VVATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN 883 (1114)
Q Consensus 805 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 883 (1114)
.+..++|++.+.||+|+||+||+|++. +++.||||++...... ...+.+.+|+.++++++||||+++++++...+..
T Consensus 11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~ 88 (303)
T 2vwi_A 11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQ--TSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDEL 88 (303)
T ss_dssp --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC------------------CCCCCCCTTBCCEEEEEESSSCE
T ss_pred ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcc--hhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCc
Confidence 345688999999999999999999965 7899999998654322 2245688899999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHhcc-------CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeec
Q 001253 884 LLMYEYMARGSLGELLHG-------ASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDF 956 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~-------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df 956 (1114)
++||||+++++|.+++.. ....+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||+||
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~df 165 (303)
T 2vwi_A 89 WLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADF 165 (303)
T ss_dssp EEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCC
T ss_pred EEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEec
Confidence 999999999999999863 345689999999999999999999999 9999999999999999999999999
Q ss_pred cCceecCCCC----CCccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHh
Q 001253 957 GLAKVIDMPQ----SKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIR 1031 (1114)
Q Consensus 957 G~a~~~~~~~----~~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~ 1031 (1114)
|++....... ........||+.|+|||++.+ ..++.++||||+|+++|||++|+.||........ ......
T Consensus 166 g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~----~~~~~~ 241 (303)
T 2vwi_A 166 GVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKV----LMLTLQ 241 (303)
T ss_dssp HHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGH----HHHHHT
T ss_pred cchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhH----HHHHhc
Confidence 9997654221 112234579999999999876 5689999999999999999999999976443221 111111
Q ss_pred cCCc--ccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1032 NNSL--VSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1032 ~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.... .....+. .........+.+++.+||+.||.+|||+.|+++
T Consensus 242 ~~~~~~~~~~~~~------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 242 NDPPSLETGVQDK------EMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp SSCCCTTC-----------CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred cCCCccccccccc------hhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 1110 0000000 001112246789999999999999999999875
No 249
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.9e-37 Score=346.14 Aligned_cols=253 Identities=26% Similarity=0.396 Sum_probs=197.2
Q ss_pred HHHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEe---
Q 001253 805 VVATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYH--- 879 (1114)
Q Consensus 805 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~--- 879 (1114)
....++|++.+.||+|+||+||+|++. +|+.||||++...... .+.+.+|+.+++++ +||||+++++++..
T Consensus 20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~----~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~ 95 (326)
T 2x7f_A 20 RDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDE----EEEIKQEINMLKKYSHHRNIATYYGAFIKKNP 95 (326)
T ss_dssp CCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSST----THHHHHHHHHHHHHCCSTTBCCEEEEEEECC-
T ss_pred cCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCccc----HHHHHHHHHHHHhccCCCCeeeeeeEEeeccC
Confidence 345688999999999999999999985 7899999999754432 45688899999998 79999999999987
Q ss_pred ---cCceEEEEecCCCCCHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEee
Q 001253 880 ---QGSNLLMYEYMARGSLGELLHGAS-STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGD 955 (1114)
Q Consensus 880 ---~~~~~lv~E~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D 955 (1114)
.+..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl~D 172 (326)
T 2x7f_A 96 PGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVD 172 (326)
T ss_dssp -CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECC
T ss_pred ccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEEee
Confidence 457899999999999999997543 4789999999999999999999999 999999999999999999999999
Q ss_pred ccCceecCCCCCCccccccccccccCccccc-----cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHH
Q 001253 956 FGLAKVIDMPQSKSMSAIAGSYGYIAPEYAY-----TMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFI 1030 (1114)
Q Consensus 956 fG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~-----~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~ 1030 (1114)
||++....... .......|++.|+|||++. +..++.++||||+||++|+|++|+.||..... ........
T Consensus 173 fg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----~~~~~~~~ 247 (326)
T 2x7f_A 173 FGVSAQLDRTV-GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHP----MRALFLIP 247 (326)
T ss_dssp CTTTC--------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCH----HHHHHHHH
T ss_pred CcCceecCcCc-cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcH----HHHHHHhh
Confidence 99998654221 2234457999999999987 56788999999999999999999999964332 12222211
Q ss_pred hcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1031 RNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.... +.. ........+.+++.+||+.||++||+++|+++
T Consensus 248 ~~~~-------~~~-----~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 248 RNPA-------PRL-----KSKKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp HSCC-------CCC-----SCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred cCcc-------ccC-----CccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 1110 000 01111246889999999999999999999987
No 250
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=2.2e-36 Score=337.73 Aligned_cols=254 Identities=25% Similarity=0.372 Sum_probs=205.5
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCC------hhhHHHHHHHHHHHhcCC-CCceeeEEeEEEe
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGN------NNVDNSFRAEILTLGKIR-HRNIVKLYGFCYH 879 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~------~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~ 879 (1114)
.++|++.+.||+|+||+||+|+++ +|+.||||++....... ....+.+.+|+.+++++. ||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 478999999999999999999986 68999999997654221 123456788999999995 9999999999999
Q ss_pred cCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCc
Q 001253 880 QGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLA 959 (1114)
Q Consensus 880 ~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a 959 (1114)
++..++||||+++++|.+++.. ...+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||.+
T Consensus 96 ~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~ 171 (298)
T 1phk_A 96 NTFFFLVFDLMKKGELFDYLTE-KVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDFGFS 171 (298)
T ss_dssp SSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred CCeEEEEEeccCCCcHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEecccch
Confidence 9999999999999999999974 34789999999999999999999999 9999999999999999999999999999
Q ss_pred eecCCCCCCccccccccccccCccccc------cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcC
Q 001253 960 KVIDMPQSKSMSAIAGSYGYIAPEYAY------TMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNN 1033 (1114)
Q Consensus 960 ~~~~~~~~~~~~~~~g~~~y~aPE~~~------~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 1033 (1114)
..... ........|++.|+|||++. ...++.++||||+|+++|||++|+.||.... .....+.....
T Consensus 172 ~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~----~~~~~~~~~~~- 244 (298)
T 1phk_A 172 CQLDP--GEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK----QMLMLRMIMSG- 244 (298)
T ss_dssp EECCT--TCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHHT-
T ss_pred hhcCC--CcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCcc----HHHHHHHHhcC-
Confidence 87642 22334567999999999885 4568889999999999999999999996432 22222222221
Q ss_pred CcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1034 SLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.. .............+.+++.+||+.||++|||+.|+++
T Consensus 245 ~~---------~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 245 NY---------QFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp CC---------CCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred Cc---------ccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 11 0001111223346889999999999999999999875
No 251
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=3.4e-36 Score=334.78 Aligned_cols=259 Identities=21% Similarity=0.327 Sum_probs=193.2
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEE
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 885 (1114)
..++|++.+.||+|+||+||+|+.. +|+.||||++...... ....+.+.++...++.++||||+++++++.+++..++
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~l 83 (290)
T 3fme_A 5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNS-QEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWI 83 (290)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CH-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEE
T ss_pred cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCc-HHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEE
Confidence 3578999999999999999999975 7899999999765432 2223445556666888999999999999999999999
Q ss_pred EEecCCCCCHHHHhcc---CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 886 MYEYMARGSLGELLHG---ASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~---~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
||||+++ +|.+++.. ....+++..+..++.|++.||+|||+.+ +|+||||||+||+++.++.+||+|||+++..
T Consensus 84 v~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 160 (290)
T 3fme_A 84 CMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYL 160 (290)
T ss_dssp EEECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC------
T ss_pred EEehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCcccc
Confidence 9999985 88887753 4568999999999999999999999842 8999999999999999999999999999875
Q ss_pred CCCCCCccccccccccccCcccc----ccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccc
Q 001253 963 DMPQSKSMSAIAGSYGYIAPEYA----YTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSG 1038 (1114)
Q Consensus 963 ~~~~~~~~~~~~g~~~y~aPE~~----~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1114)
... .......||+.|+|||++ .+..++.++||||+|+++|||++|+.||.... .....+..........
T Consensus 161 ~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---~~~~~~~~~~~~~~~~-- 233 (290)
T 3fme_A 161 VDD--VAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWG---TPFQQLKQVVEEPSPQ-- 233 (290)
T ss_dssp -----------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCS---CHHHHHHHHHHSCCCC--
T ss_pred ccc--ccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccC---chHHHHHHHhccCCCC--
Confidence 432 223344799999999996 56678999999999999999999999996432 2223333333321110
Q ss_pred cccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHhh
Q 001253 1039 MLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL--MLSES 1086 (1114)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~i 1086 (1114)
.........+.+++.+||+.||++|||+.|+++ .++..
T Consensus 234 ----------~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~f~~~ 273 (290)
T 3fme_A 234 ----------LPADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLH 273 (290)
T ss_dssp ----------CCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHH
T ss_pred ----------cccccCCHHHHHHHHHHhhcChhhCcCHHHHHhCcccccC
Confidence 001112346889999999999999999999987 44443
No 252
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=1.4e-36 Score=348.25 Aligned_cols=262 Identities=23% Similarity=0.325 Sum_probs=185.1
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEec------
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQ------ 880 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------ 880 (1114)
.++|++.+.||+|+||+||+|++. +|+.||||++..... .....+.+.+|+.+++.++||||+++++++...
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 106 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQ-SIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 106 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCcccc-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence 368999999999999999999975 789999999975433 233456788999999999999999999999754
Q ss_pred CceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 881 GSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 881 ~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
...|+||||+ +++|.++++. ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 107 ~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~a~ 180 (367)
T 2fst_X 107 NDVYLVTHLM-GADLNNIVKC--QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLAR 180 (367)
T ss_dssp CCCEEEEECC-CEECC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC-----
T ss_pred CeEEEEeccc-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeeccccc
Confidence 5679999999 6799999874 5799999999999999999999998 99999999999999999999999999998
Q ss_pred ecCCCCCCccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCc--cc
Q 001253 961 VIDMPQSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSL--VS 1037 (1114)
Q Consensus 961 ~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~--~~ 1037 (1114)
.... .....+||+.|+|||++.+ ..++.++||||+||++|||++|+.||........+ ..+......... ..
T Consensus 181 ~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l-~~i~~~~g~p~~~~~~ 255 (367)
T 2fst_X 181 HTAD----EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQL-KLILRLVGTPGAELLK 255 (367)
T ss_dssp --------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHH-HHHHHHHCSCCHHHHT
T ss_pred cccc----cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH-HHHHHHhCCCCHHHHH
Confidence 6532 2345679999999999887 67899999999999999999999999754422111 111111111000 00
Q ss_pred cccc-------ccccCCCccc-----HHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1038 GMLD-------ARLNLQDEKT-----VSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1038 ~~~~-------~~~~~~~~~~-----~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.+.. ..+....... ......+.+++.+||+.||++|||+.|+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 256 KISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp TCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 0000 0000000000 112346889999999999999999999986
No 253
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=2.5e-36 Score=350.21 Aligned_cols=260 Identities=25% Similarity=0.313 Sum_probs=196.2
Q ss_pred cCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc------
Q 001253 809 DNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS------ 882 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------ 882 (1114)
.+|++.++||+|+||+||+|++..+..||+|++....... .+|+.+++.++||||+++++++...+.
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~~-------~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~ 112 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFK-------NRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVF 112 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTSC-------CHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcchH-------HHHHHHHHhCCCCCcceEEEEEEecCCCCCceE
Confidence 6799999999999999999999877779999987544322 369999999999999999999965443
Q ss_pred eEEEEecCCCCCHHHHhc--cCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEEC-CCCCeEEeeccCc
Q 001253 883 NLLMYEYMARGSLGELLH--GASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLD-DKFEAHVGDFGLA 959 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~--~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~DfG~a 959 (1114)
.++||||++++.+..... .....+++..+..++.|+++||+|||+. +|+||||||+||+++ .++.+||+|||+|
T Consensus 113 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a 189 (394)
T 4e7w_A 113 LNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSA 189 (394)
T ss_dssp EEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred EEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCc
Confidence 789999998854443332 2356799999999999999999999999 999999999999999 7999999999999
Q ss_pred eecCCCCCCccccccccccccCccccccC-CCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCc---
Q 001253 960 KVIDMPQSKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSL--- 1035 (1114)
Q Consensus 960 ~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~--- 1035 (1114)
+..... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||........+...++. ......
T Consensus 190 ~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~-~g~p~~~~~ 266 (394)
T 4e7w_A 190 KILIAG--EPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKV-LGTPSREQI 266 (394)
T ss_dssp EECCTT--CCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHH-HCCCCHHHH
T ss_pred ccccCC--CCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH-hCCCCHHHH
Confidence 876422 233456789999999998765 5899999999999999999999999764432222222221 100000
Q ss_pred ---ccccccccccCCCc------ccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1036 ---VSGMLDARLNLQDE------KTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1036 ---~~~~~~~~~~~~~~------~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
........+..... ........+.+++.+||+.||.+|||+.|+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 267 KTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp HHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 00000000000000 01113347889999999999999999999986
No 254
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=3.3e-36 Score=337.20 Aligned_cols=251 Identities=26% Similarity=0.450 Sum_probs=194.1
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe-------
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH------- 879 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------- 879 (1114)
.++|++.+.||+|+||+||+|+.. +|+.||||++... ....+.+.+|+.++++++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~----~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 80 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT----EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKP 80 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE----HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc----HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhh
Confidence 467999999999999999999975 7899999999643 2335678899999999999999999999865
Q ss_pred ------cCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEE
Q 001253 880 ------QGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHV 953 (1114)
Q Consensus 880 ------~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl 953 (1114)
.+..|+||||+++|+|.++++.....+++..+..++.|+++||+|||+. +++||||||+||+++.++.+||
T Consensus 81 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl 157 (303)
T 1zy4_A 81 MTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKI 157 (303)
T ss_dssp -----CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEE
T ss_pred hcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEE
Confidence 3467999999999999999987666788999999999999999999999 9999999999999999999999
Q ss_pred eeccCceecCCCC-------------CCccccccccccccCccccccC-CCCcccchHHHHHHHHHHHhCCCCCCCCCCC
Q 001253 954 GDFGLAKVIDMPQ-------------SKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSYGVVLLELLTGRAPVQPLDQG 1019 (1114)
Q Consensus 954 ~DfG~a~~~~~~~-------------~~~~~~~~g~~~y~aPE~~~~~-~~~~~~DvwslGvil~el~tg~~p~~~~~~~ 1019 (1114)
+|||+++...... ........|++.|+|||++.+. .++.++||||+||++|||++ ||....
T Consensus 158 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~-- 232 (303)
T 1zy4_A 158 GDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGM-- 232 (303)
T ss_dssp CCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHH--
T ss_pred eeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCch--
Confidence 9999998654221 1223445799999999998764 68999999999999999998 543211
Q ss_pred CCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1020 GDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1020 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
+....... +... ...............+.+++.+||+.||.+|||+.|+++
T Consensus 233 -~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 233 -ERVNILKK-LRSV---------SIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp -HHHHHHHH-HHST---------TCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred -hHHHHHHh-cccc---------ccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 11122222 1111 011111122233346789999999999999999999986
No 255
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=4.4e-36 Score=351.02 Aligned_cols=264 Identities=27% Similarity=0.333 Sum_probs=197.2
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC------
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG------ 881 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 881 (1114)
.+|++.++||+|+||+||+|+++ +|+.||||++...... ..+|+++++.++||||+++++++...+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~~-------~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~ 126 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF-------KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEV 126 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTTS-------CCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccchh-------HHHHHHHHHHcCCCCccceeeEEeccCCCCcce
Confidence 56899999999999999999986 6899999998754322 236999999999999999999985422
Q ss_pred ceEEEEecCCCCCHHHHhc---cCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCC-CCeEEeecc
Q 001253 882 SNLLMYEYMARGSLGELLH---GASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDK-FEAHVGDFG 957 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~---~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~-~~~kl~DfG 957 (1114)
..++||||+++ ++.+.+. .....+++..+..++.|+++||+|||+. +|+||||||+|||++.+ +.+||+|||
T Consensus 127 ~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG 202 (420)
T 1j1b_A 127 YLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFG 202 (420)
T ss_dssp EEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred eEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccch
Confidence 35799999987 6666654 3456899999999999999999999998 99999999999999965 568999999
Q ss_pred CceecCCCCCCccccccccccccCccccccC-CCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHH-------
Q 001253 958 LAKVIDMPQSKSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNF------- 1029 (1114)
Q Consensus 958 ~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~-~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~------- 1029 (1114)
+++..... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||......+.+.+.++..
T Consensus 203 ~a~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~ 280 (420)
T 1j1b_A 203 SAKQLVRG--EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQ 280 (420)
T ss_dssp TCEECCTT--CCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHH
T ss_pred hhhhcccC--CCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHH
Confidence 99875422 223456789999999998765 79999999999999999999999997644322222222210
Q ss_pred Hh--cCCcccccccccccCCCc---ccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHhh
Q 001253 1030 IR--NNSLVSGMLDARLNLQDE---KTVSHMITVLKIAMLCTNISPFDRPTMREVVL--MLSES 1086 (1114)
Q Consensus 1030 ~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~i 1086 (1114)
+. ...+.. ...+....... ........+.+++.+||+.||.+|||+.|+++ .++++
T Consensus 281 ~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~ 343 (420)
T 1j1b_A 281 IREMNPNYTE-FKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDEL 343 (420)
T ss_dssp HHHHCSCCCC-CCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGG
T ss_pred HHhhChhhhh-hccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCHhhccc
Confidence 00 000000 00000000000 01122357889999999999999999999985 34444
No 256
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=1.7e-35 Score=345.17 Aligned_cols=263 Identities=20% Similarity=0.230 Sum_probs=201.8
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC--------CCceeeEEeEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR--------HRNIVKLYGFCY 878 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l~~~~~ 878 (1114)
.++|++.++||+|+||+||+|+.. +++.||||++... ....+.+.+|+.+++.++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~ 111 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA----EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFK 111 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC----HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC----CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeeccee
Confidence 478999999999999999999975 6889999999643 233567888999998885 788999999997
Q ss_pred ----ecCceEEEEecCCCCCHHHHh-ccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC----
Q 001253 879 ----HQGSNLLMYEYMARGSLGELL-HGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF---- 949 (1114)
Q Consensus 879 ----~~~~~~lv~E~~~~gsL~~~l-~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~---- 949 (1114)
.....++||||+.+ ++.+.+ ......+++..+..++.|++.||+|||+++ +|+||||||+|||++.++
T Consensus 112 ~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~ 188 (397)
T 1wak_A 112 ISGVNGTHICMVFEVLGH-HLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIR 188 (397)
T ss_dssp EEETTEEEEEEEECCCCC-BHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHH
T ss_pred ecCCCCceEEEEEeccCc-cHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhh
Confidence 45578999999955 555554 444467999999999999999999999853 799999999999999775
Q ss_pred ---------------------------------------------CeEEeeccCceecCCCCCCccccccccccccCccc
Q 001253 950 ---------------------------------------------EAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEY 984 (1114)
Q Consensus 950 ---------------------------------------------~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~ 984 (1114)
.+||+|||.++..... .....||+.|+|||+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~----~~~~~gt~~y~aPE~ 264 (397)
T 1wak_A 189 RLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH----FTEDIQTRQYRSLEV 264 (397)
T ss_dssp HHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC----SCSCCSCGGGCCHHH
T ss_pred hhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc----CccCCCCCcccCChh
Confidence 7999999999875422 334579999999999
Q ss_pred cccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCH--HHHHH---HHHhc--------CCccccccccc--------
Q 001253 985 AYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDL--VTWVR---NFIRN--------NSLVSGMLDAR-------- 1043 (1114)
Q Consensus 985 ~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~--~~~~~---~~~~~--------~~~~~~~~~~~-------- 1043 (1114)
+.+..++.++|||||||++|||++|+.||......... ...+. ..... ..+........
T Consensus 265 ~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (397)
T 1wak_A 265 LIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITK 344 (397)
T ss_dssp HHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCC
T ss_pred hcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccc
Confidence 99999999999999999999999999999765433211 11111 11110 11110000000
Q ss_pred ---------ccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1044 ---------LNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1044 ---------~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
+......+......+.+++.+||+.||++|||++|+++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 345 LKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp CCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred cCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 00011224556678999999999999999999999975
No 257
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=1e-35 Score=342.06 Aligned_cols=265 Identities=23% Similarity=0.291 Sum_probs=203.1
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEec-----C
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQ-----G 881 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~ 881 (1114)
.++|++.++||+|+||+||+|++. +++.||||++.... .....+.+.+|+.++++++||||+++++++... .
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 103 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFE--HQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK 103 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTT--CHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecccc--CcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence 368999999999999999999976 78899999997533 233456788999999999999999999999765 3
Q ss_pred ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 882 SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
..|+||||+++ +|.++++. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 104 ~~~iv~e~~~~-~L~~~l~~--~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~ 177 (364)
T 3qyz_A 104 DVYIVQDLMET-DLYKLLKT--QHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARV 177 (364)
T ss_dssp CEEEEEECCSE-EHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred eEEEEEcccCc-CHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceEe
Confidence 67999999985 99999974 4689999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCC--CccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccc-
Q 001253 962 IDMPQS--KSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVS- 1037 (1114)
Q Consensus 962 ~~~~~~--~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~- 1037 (1114)
...... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||............ ...........
T Consensus 178 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i-~~~~~~~~~~~~ 256 (364)
T 3qyz_A 178 ADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHI-LGILGSPSQEDL 256 (364)
T ss_dssp CCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHH-HHHHCSCCHHHH
T ss_pred cCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHH-HHHhCCCCHHHH
Confidence 643222 12345689999999998754 45899999999999999999999999765433322222 21111100000
Q ss_pred -cc-------ccccccCCCcc-----cHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1038 -GM-------LDARLNLQDEK-----TVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1038 -~~-------~~~~~~~~~~~-----~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.. ........... .......+.+++.+||++||++|||++|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 257 NCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp HTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 00 00000000000 1112346889999999999999999999986
No 258
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=7.3e-36 Score=340.24 Aligned_cols=259 Identities=22% Similarity=0.341 Sum_probs=203.2
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHH-HhcCCCCceeeEEeEEEecCce
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILT-LGKIRHRNIVKLYGFCYHQGSN 883 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~ 883 (1114)
+..++|++.+.||+|+||+||+|++. +|+.||||++....... ....+..|... ++.++||||+++++++.+++..
T Consensus 48 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~--~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~ 125 (340)
T 3an0_A 48 VKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQ--EQKRLLMDLDISMRTVDCPFTVTFYGALFREGDV 125 (340)
T ss_dssp CCSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCH--HHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCE
T ss_pred EehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcH--HHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcE
Confidence 34578999999999999999999975 78999999997654322 23344445554 7888999999999999999999
Q ss_pred EEEEecCCCCCHHHHhcc---CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 884 LLMYEYMARGSLGELLHG---ASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~---~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
++||||+++ +|.+++.. ....+++..+..++.|+++||+|||+.. +|+||||||+||+++.++.+||+|||+++
T Consensus 126 ~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~--~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~ 202 (340)
T 3an0_A 126 WICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISG 202 (340)
T ss_dssp EEEECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHHT--CCCCCSCCSTTEEECSTTCEEECCCSHHH
T ss_pred EEEHHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeeCCCce
Confidence 999999986 99888863 4568999999999999999999999742 89999999999999999999999999998
Q ss_pred ecCCCCCCccccccccccccCccccc----cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcc
Q 001253 961 VIDMPQSKSMSAIAGSYGYIAPEYAY----TMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLV 1036 (1114)
Q Consensus 961 ~~~~~~~~~~~~~~g~~~y~aPE~~~----~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1114)
.... ........||+.|+|||++. ...++.++|||||||++|||++|+.||.... .....+..........
T Consensus 203 ~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~---~~~~~~~~~~~~~~~~ 277 (340)
T 3an0_A 203 YLVD--SVAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWG---TPFQQLKQVVEEPSPQ 277 (340)
T ss_dssp HHSC--HHHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCS---CHHHHHHHHHHSCCCC
T ss_pred eccc--ccccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCcccc---chHHHHHHHhcCCCCC
Confidence 6542 12223357999999999964 3478899999999999999999999997432 2223333333321100
Q ss_pred cccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHhh
Q 001253 1037 SGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL--MLSES 1086 (1114)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~i 1086 (1114)
.........+.+++.+||+.||++|||+.|+++ .+...
T Consensus 278 ------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~f~~~ 317 (340)
T 3an0_A 278 ------------LPADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLH 317 (340)
T ss_dssp ------------CCGGGSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHH
T ss_pred ------------CCcccCCHHHHHHHHHHccCCcccCcCHHHHhcCcCcccc
Confidence 001112346889999999999999999999987 44443
No 259
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.3e-36 Score=367.40 Aligned_cols=335 Identities=17% Similarity=0.151 Sum_probs=216.8
Q ss_pred cccceeecccccccCcccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEe
Q 001253 342 LGLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDL 421 (1114)
Q Consensus 342 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 421 (1114)
.+++.+++++|.++.+.+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+.+..|..|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------- 120 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ---------- 120 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT----------
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc----------
Confidence 3455555555555555444555555555555555555555444555555555555555555444444444
Q ss_pred ecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCC
Q 001253 422 SDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGP 501 (1114)
Q Consensus 422 s~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 501 (1114)
.+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++.
T Consensus 121 --------------~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 121 --------------NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp --------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred --------------CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 444555555555555433333345555555555555555555555555555566666666655543
Q ss_pred ccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhc
Q 001253 502 IPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSL 581 (1114)
Q Consensus 502 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 581 (1114)
. ++.+++|+.|++++|.+++ +...++|+.|++++|.++ .++..+ .++|+.|+|++|.+++ +..++.+
T Consensus 187 ~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~-~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l 253 (597)
T 3oja_B 187 D---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--TAWLLNY 253 (597)
T ss_dssp C---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC-EEECSC--CSCCCEEECCSSCCCC--CGGGGGC
T ss_pred C---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccc-cccccc--CCCCCEEECCCCCCCC--ChhhccC
Confidence 1 3445566666666666653 223345667777777666 333322 2567777777777775 3567777
Q ss_pred ccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhh
Q 001253 582 FQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLL 661 (1114)
Q Consensus 582 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 661 (1114)
++|+.|+|++|.+++..|..|+.+++|+.|+|++|++++ +|..+..+++|+ .|+|++|.++ .+|..++.+++|++|+
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~-~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLK-VLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCC-EEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCc-EEECCCCCCC-ccCcccccCCCCCEEE
Confidence 778888888888777777777778888888888888775 566667777777 6888888888 4577788888999999
Q ss_pred ccCcccccCCCCccccccccceEEeccCcccCCCCCcccccccccccccCCCCCCCCCC
Q 001253 662 LNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPSSQTFQNMSVNSFSGSKGLCGGPL 720 (1114)
Q Consensus 662 Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~p~ 720 (1114)
|++|+|++.. +..+++|+.|++++|+|+|.++. ..+..+....+.++...|+.+.
T Consensus 331 L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~~ 385 (597)
T 3oja_B 331 LDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDY 385 (597)
T ss_dssp CCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTTC
T ss_pred CCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcch
Confidence 9999998663 56778999999999999997643 4567777777888999998754
No 260
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=4.2e-36 Score=345.95 Aligned_cols=258 Identities=22% Similarity=0.340 Sum_probs=198.4
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCce---
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSN--- 883 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 883 (1114)
.++|.+.+.||+|+||+||+|+++ +|+.||||++..... .....+.+.+|+.+++.++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~ 119 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ-SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNF 119 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEeccccc-chhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccc
Confidence 368999999999999999999976 789999999976543 334456788999999999999999999999877654
Q ss_pred ---EEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 884 ---LLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 884 ---~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
++||||++ ++|.+++. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 120 ~~~~lv~e~~~-~~l~~~~~---~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~a~ 192 (371)
T 4exu_A 120 YDFYLVMPFMQ-TDLQKIMG---MEFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLAR 192 (371)
T ss_dssp CCCEEEEECCC-EEHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTCC-
T ss_pred eeEEEEEcccc-ccHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCccc
Confidence 99999998 48988885 3489999999999999999999999 99999999999999999999999999998
Q ss_pred ecCCCCCCccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCc-ccc
Q 001253 961 VIDMPQSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSL-VSG 1038 (1114)
Q Consensus 961 ~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~ 1038 (1114)
.... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... .+.+......... ...
T Consensus 193 ~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~----~~~~~~i~~~~~~~~~~ 264 (371)
T 4exu_A 193 HADA----EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY----LDQLTQILKVTGVPGTE 264 (371)
T ss_dssp -----------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSH----HHHHHHHHHHHCCCCHH
T ss_pred cccc----CcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCh----HHHHHHHHHHhCCCcHH
Confidence 6532 2344578999999999887 7789999999999999999999999975432 2222221110000 000
Q ss_pred ccc-----------ccccCCCc-----ccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1039 MLD-----------ARLNLQDE-----KTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1039 ~~~-----------~~~~~~~~-----~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
... ........ ........+.+++.+||+.||++|||++|+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 265 FVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp HHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence 000 00000000 01122457889999999999999999999975
No 261
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=4.3e-35 Score=328.51 Aligned_cols=257 Identities=23% Similarity=0.314 Sum_probs=201.4
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCC-ChhhHHHHHHHHHHHhcCCCCceeeEEeEEE--ecCce
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREG-NNNVDNSFRAEILTLGKIRHRNIVKLYGFCY--HQGSN 883 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~ 883 (1114)
.++|++.+.||+|+||.||+|+.. +++.||+|++...... .....+.+.+|+.+++.++||||+++++++. +....
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 368999999999999999999975 7899999999754321 1233567899999999999999999999984 45578
Q ss_pred EEEEecCCCCCHHHHhcc-CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 884 LLMYEYMARGSLGELLHG-ASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 884 ~lv~E~~~~gsL~~~l~~-~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
++||||++++ +.+++.. ....+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||.+...
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~ 159 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEAL 159 (305)
T ss_dssp EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeecccccccc
Confidence 9999999986 7776653 345799999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCC-CCccccccccccccCccccccCC--CCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccccc
Q 001253 963 DMPQ-SKSMSAIAGSYGYIAPEYAYTMK--VTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGM 1039 (1114)
Q Consensus 963 ~~~~-~~~~~~~~g~~~y~aPE~~~~~~--~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1114)
.... ........|++.|+|||++.+.. ++.++||||+|+++|||++|+.||.... ........... ..
T Consensus 160 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----~~~~~~~i~~~-~~---- 230 (305)
T 2wtk_C 160 HPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN----IYKLFENIGKG-SY---- 230 (305)
T ss_dssp CTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS----HHHHHHHHHHC-CC----
T ss_pred CccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHhcC-CC----
Confidence 4322 22234557999999999987644 4779999999999999999999997432 22222222111 11
Q ss_pred ccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHhh
Q 001253 1040 LDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL--MLSES 1086 (1114)
Q Consensus 1040 ~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~i 1086 (1114)
.. +......+.+++.+||+.||.+|||++|+++ .+++.
T Consensus 231 -----~~----~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~ 270 (305)
T 2wtk_C 231 -----AI----PGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKK 270 (305)
T ss_dssp -----CC----CSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHSHHHHSC
T ss_pred -----CC----CCccCHHHHHHHHHHccCChhhCCCHHHHhcCcccccC
Confidence 11 1112346789999999999999999999986 34443
No 262
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.3e-36 Score=348.42 Aligned_cols=264 Identities=20% Similarity=0.318 Sum_probs=182.7
Q ss_pred cCCcC-CceecccCCeEEEEEEeC---CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe--cCc
Q 001253 809 DNFDE-RFVIGRGACGTVYRAVLR---TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH--QGS 882 (1114)
Q Consensus 809 ~~~~~-~~~lG~G~~g~Vy~~~~~---~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~ 882 (1114)
+.|++ .++||+|+||+||+|+++ +++.||||++..... ...+.+|+.++++++||||+++++++.. ...
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~-----~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~ 94 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI-----SMSACREIALLRELKHPNVISLQKVFLSHADRK 94 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC-----CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC-----CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCe
Confidence 44665 458999999999999976 578999999975433 3457789999999999999999999965 667
Q ss_pred eEEEEecCCCCCHHHHhcc--------CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEE----CCCCC
Q 001253 883 NLLMYEYMARGSLGELLHG--------ASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILL----DDKFE 950 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~--------~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill----~~~~~ 950 (1114)
.|+||||+++ +|.+++.. ....+++..+..++.|++.||+|||+. +|+||||||+|||+ +.++.
T Consensus 95 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~ 170 (405)
T 3rgf_A 95 VWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGR 170 (405)
T ss_dssp EEEEEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTC
T ss_pred EEEEEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCc
Confidence 8999999976 88887752 122589999999999999999999999 99999999999999 67889
Q ss_pred eEEeeccCceecCCCCC--CccccccccccccCccccccC-CCCcccchHHHHHHHHHHHhCCCCCCCCCCCC-----CH
Q 001253 951 AHVGDFGLAKVIDMPQS--KSMSAIAGSYGYIAPEYAYTM-KVTEKCDIYSYGVVLLELLTGRAPVQPLDQGG-----DL 1022 (1114)
Q Consensus 951 ~kl~DfG~a~~~~~~~~--~~~~~~~g~~~y~aPE~~~~~-~~~~~~DvwslGvil~el~tg~~p~~~~~~~~-----~~ 1022 (1114)
+||+|||+|+....... ......+||+.|+|||++.+. .++.++||||+||++|||++|+.||....... ..
T Consensus 171 ~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~ 250 (405)
T 3rgf_A 171 VKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYH 250 (405)
T ss_dssp EEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCC
T ss_pred EEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccch
Confidence 99999999987643221 233456899999999999874 58999999999999999999999997544210 01
Q ss_pred HHHHHHHHhc-CCcccccccccccCC--------------Cccc---------HHHHHHHHHHHhhccCCCCCCCCCHHH
Q 001253 1023 VTWVRNFIRN-NSLVSGMLDARLNLQ--------------DEKT---------VSHMITVLKIAMLCTNISPFDRPTMRE 1078 (1114)
Q Consensus 1023 ~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~~~~---------~~~~~~l~~li~~cl~~dP~~RPs~~e 1078 (1114)
...+...+.. +......+....... .... ......+.+++.+||+.||.+|||++|
T Consensus 251 ~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e 330 (405)
T 3rgf_A 251 HDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQ 330 (405)
T ss_dssp HHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHH
T ss_pred HHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHH
Confidence 1111111110 000000000000000 0000 001346789999999999999999999
Q ss_pred HHH
Q 001253 1079 VVL 1081 (1114)
Q Consensus 1079 vl~ 1081 (1114)
+++
T Consensus 331 ~L~ 333 (405)
T 3rgf_A 331 AMQ 333 (405)
T ss_dssp HHT
T ss_pred Hhc
Confidence 986
No 263
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=5.9e-36 Score=332.21 Aligned_cols=253 Identities=25% Similarity=0.341 Sum_probs=204.4
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEE
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 885 (1114)
..++|++.+.||+|+||+||+|+.+ +++.||+|++....... ...+.+.+|+.++++++||||+++++++.+.+..++
T Consensus 20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 98 (287)
T 2wei_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKN-KDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYI 98 (287)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSS-SCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccch-HHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEE
Confidence 3478999999999999999999986 78999999997654332 235678899999999999999999999999999999
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCC---CCeEEeeccCceec
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDK---FEAHVGDFGLAKVI 962 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~---~~~kl~DfG~a~~~ 962 (1114)
||||+++++|.+++... ..+++..+..++.|++.||+|||+. +++||||||+||+++.+ +.+||+|||++...
T Consensus 99 v~e~~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~ 174 (287)
T 2wei_A 99 VGELYTGGELFDEIIKR-KRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF 174 (287)
T ss_dssp EECCCCSCBHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTB
T ss_pred EEEccCCCCHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCcceee
Confidence 99999999999988643 4689999999999999999999999 99999999999999764 46999999999865
Q ss_pred CCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccc
Q 001253 963 DMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDA 1042 (1114)
Q Consensus 963 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1042 (1114)
... .......|++.|+|||.+.+ .++.++||||+|+++|+|++|+.||.... .....+.... +...
T Consensus 175 ~~~--~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~----~~~~~~~~~~-~~~~------ 240 (287)
T 2wei_A 175 QQN--TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN----EYDILKRVET-GKYA------ 240 (287)
T ss_dssp CCC--SSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS----HHHHHHHHHH-CCCC------
T ss_pred cCC--CccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCC----HHHHHHHHHc-CCCC------
Confidence 422 22334568999999998876 48999999999999999999999997533 2222222221 1111
Q ss_pred cccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1043 RLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1043 ~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
............+.+++.+||+.||++|||+.|+++
T Consensus 241 ---~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 241 ---FDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp ---CCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred ---CCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 001111122346889999999999999999999987
No 264
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=1.2e-35 Score=337.24 Aligned_cols=254 Identities=21% Similarity=0.283 Sum_probs=174.9
Q ss_pred cCCcCCc-eecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe----cCc
Q 001253 809 DNFDERF-VIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH----QGS 882 (1114)
Q Consensus 809 ~~~~~~~-~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~ 882 (1114)
++|++.+ +||+|+||+||+|+++ +|+.||||++.... ....+....++.++||||+++++++.. +..
T Consensus 28 ~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-------~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 100 (336)
T 3fhr_A 28 DDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP-------KARQEVDHHWQASGGPHIVCILDVYENMHHGKRC 100 (336)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH-------HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred ceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH-------HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCce
Confidence 7899855 6999999999999987 79999999986421 122233344667799999999999976 445
Q ss_pred eEEEEecCCCCCHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC---CCCeEEeeccC
Q 001253 883 NLLMYEYMARGSLGELLHGAS-STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD---KFEAHVGDFGL 958 (1114)
Q Consensus 883 ~~lv~E~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~DfG~ 958 (1114)
.++||||+++|+|.+++.... ..+++.++..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||+
T Consensus 101 ~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~ 177 (336)
T 3fhr_A 101 LLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGF 177 (336)
T ss_dssp EEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred EEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEecccc
Confidence 799999999999999998554 4799999999999999999999999 9999999999999986 45599999999
Q ss_pred ceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccc
Q 001253 959 AKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSG 1038 (1114)
Q Consensus 959 a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1114)
++.... .......||+.|+|||++.+..++.++||||+|+++|+|++|+.||............ ......
T Consensus 178 ~~~~~~---~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~-~~~~~~------ 247 (336)
T 3fhr_A 178 AKETTQ---NALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGM-KRRIRL------ 247 (336)
T ss_dssp CEEC-------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-------------------------
T ss_pred ceeccc---cccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhH-HHhhhc------
Confidence 986542 2234457899999999998888999999999999999999999999754432211111 111110
Q ss_pred cccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHh
Q 001253 1039 MLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL--MLSE 1085 (1114)
Q Consensus 1039 ~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~--~L~~ 1085 (1114)
................+.+++.+||+.||++|||++|+++ .+++
T Consensus 248 ---~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~ 293 (336)
T 3fhr_A 248 ---GQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWINQ 293 (336)
T ss_dssp ------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHT
T ss_pred ---cccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccccc
Confidence 0111111111223346889999999999999999999997 4444
No 265
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=1.4e-35 Score=343.18 Aligned_cols=201 Identities=24% Similarity=0.322 Sum_probs=171.7
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-CC-----ceeeEEeEEEe
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-HR-----NIVKLYGFCYH 879 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l~~~~~~ 879 (1114)
..++|++.++||+|+||+||+|+++ +++.||||++.... .....+..|+.+++.++ |+ +|+++++++..
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~ 127 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK----AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMF 127 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH----HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH----HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeecc
Confidence 3578999999999999999999976 68899999996432 23456777888887774 44 59999999999
Q ss_pred cCceEEEEecCCCCCHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEEC--CCCCeEEeec
Q 001253 880 QGSNLLMYEYMARGSLGELLHGAS-STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLD--DKFEAHVGDF 956 (1114)
Q Consensus 880 ~~~~~lv~E~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~--~~~~~kl~Df 956 (1114)
.+..++||||+++ +|.+++.... ..+++..+..++.|++.||+|||++ ..+|+||||||+|||++ .++.+||+||
T Consensus 128 ~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DF 205 (382)
T 2vx3_A 128 RNHLCLVFEMLSY-NLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDF 205 (382)
T ss_dssp TTEEEEEEECCCC-BHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCC
T ss_pred CCceEEEEecCCC-CHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEec
Confidence 9999999999975 9999987543 5689999999999999999999953 23899999999999995 5778999999
Q ss_pred cCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCC
Q 001253 957 GLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLD 1017 (1114)
Q Consensus 957 G~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~ 1017 (1114)
|+|+..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||....
T Consensus 206 G~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~ 262 (382)
T 2vx3_A 206 GSSCQLGQR----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGAN 262 (382)
T ss_dssp TTCEETTCC----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred cCceecccc----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 999876422 234579999999999999999999999999999999999999997544
No 266
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=8.7e-36 Score=337.60 Aligned_cols=267 Identities=21% Similarity=0.324 Sum_probs=200.2
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC--CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC---CCCceeeEEeEEE---
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR--TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI---RHRNIVKLYGFCY--- 878 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~--~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~--- 878 (1114)
..++|++.+.||+|+||+||+|++. +|+.||+|++........ ....+.+|+.+++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~-~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~ 87 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEG-MPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 87 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTS-CBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCccccc-CCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence 4578999999999999999999983 688999999975543221 122355677666655 8999999999987
Q ss_pred --ecCceEEEEecCCCCCHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEee
Q 001253 879 --HQGSNLLMYEYMARGSLGELLHGAS-STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGD 955 (1114)
Q Consensus 879 --~~~~~~lv~E~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D 955 (1114)
.....++||||++ |+|.+++.... ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~D 163 (326)
T 1blx_A 88 TDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLAD 163 (326)
T ss_dssp CSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECS
T ss_pred cCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEec
Confidence 4567899999998 59999987543 3589999999999999999999999 999999999999999999999999
Q ss_pred ccCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcC--
Q 001253 956 FGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNN-- 1033 (1114)
Q Consensus 956 fG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-- 1033 (1114)
||+++.... ........|++.|+|||++.+..++.++||||+||++|||++|+.||.......... .+.......
T Consensus 164 fg~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~-~i~~~~~~~~~ 240 (326)
T 1blx_A 164 FGLARIYSF--QMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLG-KILDVIGLPGE 240 (326)
T ss_dssp CCSCCCCCG--GGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH-HHHHHHCCCCG
T ss_pred CcccccccC--CCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHH-HHHHHcCCCCc
Confidence 999986532 223345678999999999999999999999999999999999999997543221111 111111110
Q ss_pred -Cccccccccc--c-----cCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1034 -SLVSGMLDAR--L-----NLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1034 -~~~~~~~~~~--~-----~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.+......+. . .............+.+++.+||+.||++|||+.|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 241 EDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp GGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 0000000000 0 0000011122346789999999999999999999984
No 267
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=6.6e-36 Score=343.64 Aligned_cols=268 Identities=23% Similarity=0.289 Sum_probs=190.5
Q ss_pred HHHHHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecC
Q 001253 803 DLVVATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQG 881 (1114)
Q Consensus 803 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 881 (1114)
......++|++.+.||+|+||+||+|+++ +|+.||||++...... ...+.+|+..++.++||||+++++++...+
T Consensus 17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~----~~~~~~~~~~l~~l~h~niv~~~~~~~~~~ 92 (360)
T 3e3p_A 17 RSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRF----RNRELQIMQDLAVLHHPNIVQLQSYFYTLG 92 (360)
T ss_dssp HHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTC----CCHHHHHHHHHHHHCCTTBCCEEEEEEEEC
T ss_pred hchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccc----cHHHHHHHHHHHhcCCCCcccHHHhhhccc
Confidence 34556689999999999999999999986 7899999998654433 234566788888899999999999997644
Q ss_pred c-------eEEEEecCCCCCHHHHhc---cCCCCCCHHHHHHHHHHHHHHHHHHH--hCCCCCeEecCCCCCCeEECC-C
Q 001253 882 S-------NLLMYEYMARGSLGELLH---GASSTLDWQTRFMIALGAAEGLSYLH--HDCKPRIFHRDIKSNNILLDD-K 948 (1114)
Q Consensus 882 ~-------~~lv~E~~~~gsL~~~l~---~~~~~l~~~~~~~i~~~i~~~L~~LH--~~~~~~ivH~Dlk~~Nill~~-~ 948 (1114)
. .++||||+++ ++.+.+. .....+++..+..++.|++.|++||| +. +|+||||||+||+++. +
T Consensus 93 ~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~ 168 (360)
T 3e3p_A 93 ERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEAD 168 (360)
T ss_dssp SSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTT
T ss_pred cccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCC
Confidence 3 7899999987 5544433 24567899999999999999999999 77 9999999999999996 8
Q ss_pred CCeEEeeccCceecCCCCCCccccccccccccCccccccCC-CCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 001253 949 FEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMK-VTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVR 1027 (1114)
Q Consensus 949 ~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~-~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~ 1027 (1114)
+.+||+|||+++.... ........||+.|+|||++.+.. ++.++||||+||++|||++|+.||............++
T Consensus 169 ~~~kl~Dfg~a~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~ 246 (360)
T 3e3p_A 169 GTLKLCDFGSAKKLSP--SEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVR 246 (360)
T ss_dssp TEEEECCCTTCBCCCT--TSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred CcEEEeeCCCceecCC--CCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHH
Confidence 9999999999987643 22334557899999999987654 89999999999999999999999976443222222221
Q ss_pred HHHhcCC-----------ccccccc-ccc---cCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1028 NFIRNNS-----------LVSGMLD-ARL---NLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1028 ~~~~~~~-----------~~~~~~~-~~~---~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
. ..... ....... ... .............+.+++.+||+.||.+|||+.|+++
T Consensus 247 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 247 V-LGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp H-HCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred H-cCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 1 10000 0000000 000 0000111123457899999999999999999999986
No 268
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-35 Score=345.20 Aligned_cols=335 Identities=16% Similarity=0.128 Sum_probs=215.7
Q ss_pred ccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeee
Q 001253 366 KNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNL 445 (1114)
Q Consensus 366 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~L 445 (1114)
++++.|++++|.++...+..|..+++|++|++++|.+.+..+..|..+++|++|+|++|++++..|..|..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 44444455444444333333444444555555555544444445555555555555555555555555555555555555
Q ss_pred ccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccC
Q 001253 446 ETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGE 525 (1114)
Q Consensus 446 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 525 (1114)
++|+++...+..+..+++|++|++++|++++..|..+..+++|++|++++|++++. .+..+++|+.|++++|.+++.
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc
Confidence 55555533333345566666666666666655555566666666666666666543 244556666677776666532
Q ss_pred CCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCccccccccc
Q 001253 526 LPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNL 605 (1114)
Q Consensus 526 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 605 (1114)
...++|+.|++++|.++ .+|... .++|+.|++++|++++. ..+..+++|++|++++|.+++..|..|..+
T Consensus 202 -----~~~~~L~~L~l~~n~l~-~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 202 -----AIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp -----ECCSSCSEEECCSSCCC-EEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred -----CCCCcceEEECCCCeee-eccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 22346777777777776 334332 36777777777777753 467777778888888888877777777778
Q ss_pred ccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccccccccceEE
Q 001253 606 SRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCN 685 (1114)
Q Consensus 606 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ 685 (1114)
++|+.|+|++|++++ +|..+..+++|+ .|+|++|++++ +|..++.+++|++|+|++|+|++. | +..+++|+.|+
T Consensus 272 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~-~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~ 345 (390)
T 3o6n_A 272 QRLERLYISNNRLVA-LNLYGQPIPTLK-VLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT 345 (390)
T ss_dssp SSCCEEECCSSCCCE-EECSSSCCTTCC-EEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred ccCCEEECCCCcCcc-cCcccCCCCCCC-EEECCCCccee-cCccccccCcCCEEECCCCcccee-C--chhhccCCEEE
Confidence 888888888888774 566666777777 68888888874 466788888999999999999865 3 67788999999
Q ss_pred eccCcccCCCCCcccccccccccccCCCCCCCCCC
Q 001253 686 FSYNNLTGPIPSSQTFQNMSVNSFSGSKGLCGGPL 720 (1114)
Q Consensus 686 ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~p~ 720 (1114)
+++|+|.|.... ..+..+....+.++...|+.|.
T Consensus 346 l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 346 LSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp CCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTTC
T ss_pred cCCCCccchhHH-HHHHHHHhhcccccCceecccc
Confidence 999999986432 3455666666778888887654
No 269
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=1.1e-35 Score=338.79 Aligned_cols=261 Identities=20% Similarity=0.294 Sum_probs=202.6
Q ss_pred hcCCcCCceecccCCeEEEEEEe-C-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCC------ceeeEEeEEEe
Q 001253 808 TDNFDERFVIGRGACGTVYRAVL-R-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHR------NIVKLYGFCYH 879 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~-~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~------niv~l~~~~~~ 879 (1114)
.++|++.+.||+|+||+||+|.+ + +++.||||++... ....+.+.+|+.+++.++|+ +++++++++..
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~----~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~ 88 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV----DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH 88 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS----HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC----CchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc
Confidence 36899999999999999999997 3 6889999998643 23356688899998888765 49999999999
Q ss_pred cCceEEEEecCCCCCHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC-----------
Q 001253 880 QGSNLLMYEYMARGSLGELLHGAS-STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD----------- 947 (1114)
Q Consensus 880 ~~~~~lv~E~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~----------- 947 (1114)
.+..++||||+ +++|.+++.... ..+++..+..++.|+++||+|||+. +|+||||||+||+++.
T Consensus 89 ~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~ 164 (339)
T 1z57_A 89 HGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKI 164 (339)
T ss_dssp TTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC---
T ss_pred CCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCcc
Confidence 99999999999 789999987544 3689999999999999999999999 9999999999999987
Q ss_pred --------CCCeEEeeccCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCC
Q 001253 948 --------KFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQG 1019 (1114)
Q Consensus 948 --------~~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~ 1019 (1114)
++.+||+|||+++.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||......
T Consensus 165 ~~~~~~~~~~~~kl~Dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~ 240 (339)
T 1z57_A 165 KRDERTLINPDIKVVDFGSATYDDE----HHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSK 240 (339)
T ss_dssp -CEEEEESCCCEEECCCSSCEETTS----CCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHH
T ss_pred ccccccccCCCceEeeCcccccCcc----ccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChH
Confidence 67899999999987432 223457999999999999999999999999999999999999999754321
Q ss_pred CCHHHHHHHHHhcCCc--------ccccccc-------------------cccCCCcccHHHHHHHHHHHhhccCCCCCC
Q 001253 1020 GDLVTWVRNFIRNNSL--------VSGMLDA-------------------RLNLQDEKTVSHMITVLKIAMLCTNISPFD 1072 (1114)
Q Consensus 1020 ~~~~~~~~~~~~~~~~--------~~~~~~~-------------------~~~~~~~~~~~~~~~l~~li~~cl~~dP~~ 1072 (1114)
. ....+......... ....... ...............+.+++.+||+.||.+
T Consensus 241 ~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~ 319 (339)
T 1z57_A 241 E-HLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAK 319 (339)
T ss_dssp H-HHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTT
T ss_pred H-HHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccc
Confidence 1 11112211110000 0000000 000001112344567899999999999999
Q ss_pred CCCHHHHHH
Q 001253 1073 RPTMREVVL 1081 (1114)
Q Consensus 1073 RPs~~evl~ 1081 (1114)
|||++|+++
T Consensus 320 Rpt~~ell~ 328 (339)
T 1z57_A 320 RITLREALK 328 (339)
T ss_dssp SCCHHHHTT
T ss_pred ccCHHHHhc
Confidence 999999874
No 270
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=1e-35 Score=341.12 Aligned_cols=265 Identities=23% Similarity=0.318 Sum_probs=200.3
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEec-----C
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQ-----G 881 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~ 881 (1114)
.++|++.+.||+|+||+||+|+++ +|+.||||++.... .......+.+|+.++++++||||+++++++... .
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 87 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFD--KPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFN 87 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCS--SHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCC
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccc--cchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccc
Confidence 378999999999999999999986 78999999996432 333456678999999999999999999998764 5
Q ss_pred ceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 882 SNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
..++||||+++ +|.+++.. ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 88 ~~~lv~e~~~~-~L~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~ 161 (353)
T 2b9h_A 88 EVYIIQELMQT-DLHRVIST--QMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARI 161 (353)
T ss_dssp CEEEEECCCSE-EHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred eEEEEEeccCc-cHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEecccccc
Confidence 78999999984 99999874 4689999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCC---------ccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHh
Q 001253 962 IDMPQSK---------SMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIR 1031 (1114)
Q Consensus 962 ~~~~~~~---------~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~ 1031 (1114)
....... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||......... ..+.....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~-~~~~~~~~ 240 (353)
T 2b9h_A 162 IDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQL-LLIFGIIG 240 (353)
T ss_dssp CC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH-HHHHHHHC
T ss_pred cccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHH-HHHHHHhC
Confidence 6432211 1233578999999998764 67899999999999999999999999754321111 11111111
Q ss_pred cCCccc---cccc-------ccccCCCc-----ccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1032 NNSLVS---GMLD-------ARLNLQDE-----KTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1032 ~~~~~~---~~~~-------~~~~~~~~-----~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
...... .... ........ ........+.+++.+||+.||++|||++|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 241 TPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp CCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 100000 0000 00000000 01122356889999999999999999999986
No 271
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=2.9e-36 Score=339.22 Aligned_cols=263 Identities=21% Similarity=0.325 Sum_probs=201.4
Q ss_pred CCCCHHHHHHHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC--CCceeeEE
Q 001253 797 EGFTFKDLVVATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR--HRNIVKLY 874 (1114)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~ 874 (1114)
..+.+..+.+..++|++.+.||+|+||+||+|++++++.||||++..... .....+.+.+|+.++++++ ||||++++
T Consensus 16 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~E~~~l~~l~~~~~~iv~~~ 94 (313)
T 3cek_A 16 ENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEA-DNQTLDSYRNEIAYLNKLQQHSDKIIRLY 94 (313)
T ss_dssp ----CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSC-CHHHHHHHHHHHHHHHHHGGGCTTBCCEE
T ss_pred CCCCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccc-cccchHHHHHHHHHHHhccccCCceEEEE
Confidence 33444445556688999999999999999999998899999999976543 2344577889999999997 59999999
Q ss_pred eEEEecCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEe
Q 001253 875 GFCYHQGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVG 954 (1114)
Q Consensus 875 ~~~~~~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~ 954 (1114)
+++..++..++||| +.+++|.+++... ..+++..+..++.|+++||+|||+. +|+||||||+||++++ +.+||+
T Consensus 95 ~~~~~~~~~~lv~e-~~~~~L~~~l~~~-~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~ 168 (313)
T 3cek_A 95 DYEITDQYIYMVME-CGNIDLNSWLKKK-KSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLI 168 (313)
T ss_dssp EEEECSSEEEEEEC-CCSEEHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEEC
T ss_pred EEeecCCEEEEEEe-cCCCcHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEe
Confidence 99999999999999 5577999999854 4789999999999999999999999 9999999999999964 899999
Q ss_pred eccCceecCCCCC-CccccccccccccCcccccc-----------CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCH
Q 001253 955 DFGLAKVIDMPQS-KSMSAIAGSYGYIAPEYAYT-----------MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDL 1022 (1114)
Q Consensus 955 DfG~a~~~~~~~~-~~~~~~~g~~~y~aPE~~~~-----------~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~ 1022 (1114)
|||+++....... .......|++.|+|||++.+ ..++.++||||+|+++|||++|+.||..... .
T Consensus 169 Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~---~ 245 (313)
T 3cek_A 169 DFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN---Q 245 (313)
T ss_dssp CCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCS---H
T ss_pred eccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHH---H
Confidence 9999987643222 12234579999999999875 4688899999999999999999999964322 2
Q ss_pred HHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1023 VTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
............. .. .+......+.+++.+||+.||++||+++|+++
T Consensus 246 ~~~~~~~~~~~~~--------~~----~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 292 (313)
T 3cek_A 246 ISKLHAIIDPNHE--------IE----FPDIPEKDLQDVLKCCLKRDPKQRISIPELLA 292 (313)
T ss_dssp HHHHHHHHCTTSC--------CC----CCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHhcccc--------cC----CcccchHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 2222222221110 00 01111246889999999999999999999986
No 272
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.6e-36 Score=337.47 Aligned_cols=258 Identities=29% Similarity=0.488 Sum_probs=156.5
Q ss_pred ccceeeeccCCccC--CcCcccccCCcceEEeecc-ceeeccCCchhhccccccEeecccccCCCCccccccccccCcEE
Q 001253 439 SLIFLNLETNKLTG--SIPTGVTRCKSLVQLRLGG-NSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRL 515 (1114)
Q Consensus 439 ~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 515 (1114)
+++.|+|++|.+++ .+|..+..+++|++|+|++ |.+.+.+|..|+.+++|++|+|++|++++.+|..|.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45566666666655 5555555555555555553 55555555555555555555555555555555555555555555
Q ss_pred EecCceeccCCCccccCCCCcceeecccccccccccccccccc-cceEEECccccccCCCchhhhhcccCCeeeccCccC
Q 001253 516 HLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCK-MLQRLDLSWNKFVGALPREIGSLFQLELLKLSENEL 594 (1114)
Q Consensus 516 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 594 (1114)
+|++|+|++.+|..|..+++|++|+|++|++++.+|..+..++ +|+.|+|++|++++.+|..+..
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-------------- 196 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-------------- 196 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--------------
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--------------
Confidence 5555555555555555555555555555555555555555544 4555555555555444444444
Q ss_pred CCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCc
Q 001253 595 SGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGS 674 (1114)
Q Consensus 595 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~ 674 (1114)
++ |+.|++++|++++.+|..+..++.|+ .|+|++|++++.+|. +..+++|++|+|++|+|+|.+|.+
T Consensus 197 ----------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 197 ----------LN-LAFVDLSRNMLEGDASVLFGSDKNTQ-KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp ----------CC-CSEEECCSSEEEECCGGGCCTTSCCS-EEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred ----------Cc-ccEEECcCCcccCcCCHHHhcCCCCC-EEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence 43 55555555555545555555555555 455555555555444 556667777788888887777877
Q ss_pred cccccccceEEeccCcccCCCCCcccccccccccccCCCCCCCCCCCCC
Q 001253 675 FVNLSSLLGCNFSYNNLTGPIPSSQTFQNMSVNSFSGSKGLCGGPLQNC 723 (1114)
Q Consensus 675 ~~~l~~l~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~p~~~~ 723 (1114)
|.++++|+.|++++|+++|.+|....+..+....+.+|+.+||.|++.|
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred HhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence 8788888888888888888888777777777777788888888877544
No 273
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-35 Score=342.29 Aligned_cols=352 Identities=19% Similarity=0.166 Sum_probs=218.0
Q ss_pred CCCCCCCCCCCCCccceEEEecCCCccEEEEEeecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCCCCCCEE
Q 001253 52 YLGNWNPNDSTPCGWIGVNCTTNDFGAVVFSLNLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNCSSLEVL 131 (1114)
Q Consensus 52 ~~~~W~~~~~~~C~w~gv~C~~~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 131 (1114)
.+++|.+...+||.|.+..|...+ +.+............-..+.+++.|++++|.++...+..+..+++|++|
T Consensus 2 ~~~~~~~~~~C~~~~~~~~c~~~~-------~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L 74 (390)
T 3o6n_A 2 NVKPRQPEYKCIDSNLQYDCVFYD-------VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74 (390)
T ss_dssp -----CCEECBCC------EEEES-------CEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEE
T ss_pred CcCCCCCccceehhhhhhccceee-------eeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEE
Confidence 367898754433456666664322 1112222222333334457889999999999875444457889999999
Q ss_pred EccCCCcccccccccccccccceeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccceeccccccc
Q 001253 132 NLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQNLIS 211 (1114)
Q Consensus 132 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~ 211 (1114)
+|++|.+++..+..|+.+++|++|+|++|++++..|..|+++++|++|++++|+++...+..|.++++|++|++++|.+.
T Consensus 75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 154 (390)
T 3o6n_A 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154 (390)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC
Confidence 99999999877788999999999999999999877888888888888888888888544445678888888888888888
Q ss_pred cccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCcccCccccccccccccchhhcccccccCCchhhhc
Q 001253 212 GSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQVGQLPKELG 291 (1114)
Q Consensus 212 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~ 291 (1114)
+..|..+.++++|++|++++|++++. .++.+++|+.|++++|.+++ +...++|++|++++|.+... |..
T Consensus 155 ~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~-- 223 (390)
T 3o6n_A 155 RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP-- 223 (390)
T ss_dssp BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--
T ss_pred ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-ccc--
Confidence 77777788888888888888888743 35666777777787777763 22334566666666654433 211
Q ss_pred CCCccceeeecccccccccCccccccccccccccccccCCCCCchhhhcccccceeecccccccCcccccccccccCCEE
Q 001253 292 SIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELTTLKNLTKL 371 (1114)
Q Consensus 292 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 371 (1114)
..++|++|++++|.+. +. ..+..+++|+.|++++|.+++..|..|..+++|++|
T Consensus 224 ~~~~L~~L~l~~n~l~------------------------~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 224 VNVELTILKLQHNNLT------------------------DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp CCSSCCEEECCSSCCC------------------------CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred ccccccEEECCCCCCc------------------------cc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 1245555555555554 22 234444555555555555555555555555555555
Q ss_pred EcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCcc
Q 001253 372 DLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLT 451 (1114)
Q Consensus 372 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~ 451 (1114)
+|++|++++ +|..+..+++|++|++++|++. .+|..+..+++|++|+|++|+++.. + +..+++|++|++++|.+.
T Consensus 278 ~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 278 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred ECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCcc
Confidence 555555553 3334445555555555555555 2333445555666666666666533 2 444556666666666665
Q ss_pred C
Q 001253 452 G 452 (1114)
Q Consensus 452 ~ 452 (1114)
.
T Consensus 353 ~ 353 (390)
T 3o6n_A 353 C 353 (390)
T ss_dssp H
T ss_pred c
Confidence 3
No 274
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=338.96 Aligned_cols=257 Identities=21% Similarity=0.334 Sum_probs=197.5
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc-----
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS----- 882 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 882 (1114)
++|.+.+.||+|+||+||+|+++ +|+.||||++..... .....+.+.+|+.+++.++||||+++++++...+.
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQ-SEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTS-SHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEeccccc-chHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 67899999999999999999976 789999999976543 33445678899999999999999999999987654
Q ss_pred -eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 883 -NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 883 -~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
.|+||||++ ++|.+++. ..+++..+..++.|+++||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 103 ~~~lv~e~~~-~~l~~~~~---~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~ 175 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMG---LKFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARH 175 (353)
T ss_dssp CCEEEEECCS-EEGGGTTT---SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCTTC
T ss_pred eEEEEecccc-CCHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecccccC
Confidence 499999998 48888875 3589999999999999999999999 999999999999999999999999999986
Q ss_pred cCCCCCCccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhc---CC--c
Q 001253 962 IDMPQSKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRN---NS--L 1035 (1114)
Q Consensus 962 ~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~---~~--~ 1035 (1114)
... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||..... ...+...... .. +
T Consensus 176 ~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~----~~~~~~i~~~~~~~~~~~ 247 (353)
T 3coi_A 176 ADA----EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY----LDQLTQILKVTGVPGTEF 247 (353)
T ss_dssp ------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCH----HHHHHHHHHHHCBCCHHH
T ss_pred CCC----CccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH----HHHHHHHHHHhCCCCHHH
Confidence 432 2234578999999999876 6789999999999999999999999975432 2222221110 00 0
Q ss_pred ------------ccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1036 ------------VSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1036 ------------~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
...+..................+.+++.+||+.||++|||++|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 248 VQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp HTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 0000000000000111223457889999999999999999999985
No 275
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=2.5e-35 Score=333.79 Aligned_cols=255 Identities=25% Similarity=0.385 Sum_probs=179.0
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHH-HHhcCCCCceeeEEeEEEecCceEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEIL-TLGKIRHRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~l 885 (1114)
.++|++.+.||+|+||+||+|+.+ +|+.||||++..... ......+..|+. +++.++||||+++++++.+++..++
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~--~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~l 98 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVD--EKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWI 98 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCC--HHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccC--chHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEE
Confidence 478999999999999999999986 789999999976533 222344555555 7788899999999999999999999
Q ss_pred EEecCCCCCHHHHhcc----CCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 886 MYEYMARGSLGELLHG----ASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~----~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
||||+++ +|.+++.. ....+++..+..++.|++.||+|||+. .+|+||||||+||+++.++.+||+|||+++.
T Consensus 99 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~ 175 (327)
T 3aln_A 99 CMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGISGQ 175 (327)
T ss_dssp EECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECCCSSSCC
T ss_pred EEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEccCCCcee
Confidence 9999986 88877752 356789999999999999999999984 2799999999999999999999999999986
Q ss_pred cCCCCCCccccccccccccCcccc----ccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccc
Q 001253 962 IDMPQSKSMSAIAGSYGYIAPEYA----YTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVS 1037 (1114)
Q Consensus 962 ~~~~~~~~~~~~~g~~~y~aPE~~----~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1114)
.... .......|++.|+|||++ .+..++.++||||||+++|||++|+.||.......+ .+ . ....
T Consensus 176 ~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~---~~----~--~~~~ 244 (327)
T 3aln_A 176 LVDS--IAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFD---QL----T--QVVK 244 (327)
T ss_dssp --------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC--------------C--CCCC
T ss_pred cccc--cccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHH---HH----H--HHhc
Confidence 5422 222334799999999998 466789999999999999999999999975332110 00 0 0000
Q ss_pred ccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1038 GMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.................+.+++.+||+.||++|||+.|+++
T Consensus 245 ---~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 245 ---GDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp ---SCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ---CCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 00000011111122346889999999999999999999976
No 276
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=5.6e-35 Score=329.98 Aligned_cols=261 Identities=22% Similarity=0.342 Sum_probs=193.4
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEE--------
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCY-------- 878 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~-------- 878 (1114)
.++|++.+.||+|+||+||+|+++ +|+.||+|++.... ....+.+.+|+.++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~---~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 86 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTD---PQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTD 86 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCS---HHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCC---hHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccc
Confidence 368999999999999999999987 58999999986442 344567889999999999999999999874
Q ss_pred ------ecCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEEC-CCCCe
Q 001253 879 ------HQGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLD-DKFEA 951 (1114)
Q Consensus 879 ------~~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~ 951 (1114)
+....++||||++ |+|.++++. ..+++..+..++.|+++||+|||+. +|+||||||+||+++ +++.+
T Consensus 87 ~~~~~~~~~~~~lv~e~~~-~~L~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~ 160 (320)
T 2i6l_A 87 DVGSLTELNSVYIVQEYME-TDLANVLEQ--GPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVL 160 (320)
T ss_dssp ----CCSCSEEEEEEECCS-EEHHHHHTT--CCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEE
T ss_pred ccccccccCceeEEeeccC-CCHHHHhhc--CCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeE
Confidence 3457799999998 599999973 5689999999999999999999999 999999999999997 56799
Q ss_pred EEeeccCceecCCCC--CCccccccccccccCcccccc-CCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Q 001253 952 HVGDFGLAKVIDMPQ--SKSMSAIAGSYGYIAPEYAYT-MKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRN 1028 (1114)
Q Consensus 952 kl~DfG~a~~~~~~~--~~~~~~~~g~~~y~aPE~~~~-~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~ 1028 (1114)
||+|||+++...... ........+++.|+|||.+.+ ..++.++||||+|+++|||++|+.||..... ......
T Consensus 161 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~----~~~~~~ 236 (320)
T 2i6l_A 161 KIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHE----LEQMQL 236 (320)
T ss_dssp EECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH----HHHHHH
T ss_pred EEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCH----HHHHHH
Confidence 999999998754221 122334567999999998865 6789999999999999999999999975432 222222
Q ss_pred HHhcCCcccc------------cccccccCCC----cccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1029 FIRNNSLVSG------------MLDARLNLQD----EKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1029 ~~~~~~~~~~------------~~~~~~~~~~----~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.......... .......... .........+.+++.+||+.||++|||++|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 237 ILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp HHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 2111100000 0000000000 001122356889999999999999999999975
No 277
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=3.5e-35 Score=336.91 Aligned_cols=261 Identities=20% Similarity=0.299 Sum_probs=199.4
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CC-cEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCc------eeeEEeEEEe
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TG-HTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRN------IVKLYGFCYH 879 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g-~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~ 879 (1114)
.++|++.+.||+|+||+||+|+.. ++ +.||+|++... ....+.+.+|+.+++.++|++ ++.+++++..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~----~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~ 93 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV----GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF 93 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC----HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc----ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee
Confidence 478999999999999999999975 44 68999999643 233566788999999887665 9999999999
Q ss_pred cCceEEEEecCCCCCHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEE-------------
Q 001253 880 QGSNLLMYEYMARGSLGELLHGA-SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILL------------- 945 (1114)
Q Consensus 880 ~~~~~lv~E~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill------------- 945 (1114)
.+..++||||++ +++.+++... ...+++.++..++.|+++||+|||+. +|+||||||+||++
T Consensus 94 ~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~ 169 (355)
T 2eu9_A 94 HGHMCIAFELLG-KNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHK 169 (355)
T ss_dssp TTEEEEEEECCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-
T ss_pred CCeEEEEEeccC-CChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecccccccccccc
Confidence 999999999995 5666666543 35799999999999999999999998 99999999999999
Q ss_pred ------CCCCCeEEeeccCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCC
Q 001253 946 ------DDKFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQG 1019 (1114)
Q Consensus 946 ------~~~~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~ 1019 (1114)
+.++.+||+|||+++.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||......
T Consensus 170 ~~~~~~~~~~~~kl~Dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~ 245 (355)
T 2eu9_A 170 SCEEKSVKNTSIRVADFGSATFDHE----HHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENR 245 (355)
T ss_dssp CCCEEEESCCCEEECCCTTCEETTS----CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred cccccccCCCcEEEeecCccccccc----cccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH
Confidence 5678999999999986432 223457999999999999999999999999999999999999999754322
Q ss_pred CCHHHHHHHHHhcCC--------cccccccccc-------------------cCCCcccHHHHHHHHHHHhhccCCCCCC
Q 001253 1020 GDLVTWVRNFIRNNS--------LVSGMLDARL-------------------NLQDEKTVSHMITVLKIAMLCTNISPFD 1072 (1114)
Q Consensus 1020 ~~~~~~~~~~~~~~~--------~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~li~~cl~~dP~~ 1072 (1114)
. ....+........ .......... .............+.+++.+||+.||++
T Consensus 246 ~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~ 324 (355)
T 2eu9_A 246 E-HLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQ 324 (355)
T ss_dssp H-HHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTT
T ss_pred H-HHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhh
Confidence 1 1111221111100 0000000000 0001112233557889999999999999
Q ss_pred CCCHHHHHH
Q 001253 1073 RPTMREVVL 1081 (1114)
Q Consensus 1073 RPs~~evl~ 1081 (1114)
|||++|+++
T Consensus 325 Rpt~~e~l~ 333 (355)
T 2eu9_A 325 RITLAEALL 333 (355)
T ss_dssp SCCHHHHTT
T ss_pred CcCHHHHhc
Confidence 999999873
No 278
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=331.80 Aligned_cols=253 Identities=21% Similarity=0.333 Sum_probs=185.5
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|+++ +|+.||||++...... ....+.+.++..+++.++||||+++++++.+++..++|
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv 102 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNK-EENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIA 102 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCH-HHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccc-hHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEE
Confidence 367899999999999999999986 7899999999765432 22234455566678888999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHh-CCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHH-DCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMP 965 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~-~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~ 965 (1114)
|||+ ++.+..+.......+++..+..++.|+++||+|||+ . +++||||||+||+++.++.+||+|||++......
T Consensus 103 ~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~ 178 (318)
T 2dyl_A 103 MELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDFGISGRLVDD 178 (318)
T ss_dssp ECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCCTTC------
T ss_pred Eecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEECCCchhccCC
Confidence 9999 557777766555679999999999999999999998 5 8999999999999999999999999999765422
Q ss_pred CCCccccccccccccCccccc-----cCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 966 QSKSMSAIAGSYGYIAPEYAY-----TMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 966 ~~~~~~~~~g~~~y~aPE~~~-----~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
.......|++.|+|||++. ...++.++||||+|+++|||++|+.||..... ....+.........
T Consensus 179 --~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~~~~~~~~~~~~----- 248 (318)
T 2dyl_A 179 --KAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKT---DFEVLTKVLQEEPP----- 248 (318)
T ss_dssp ----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCS---HHHHHHHHHHSCCC-----
T ss_pred --ccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCc---cHHHHHHHhccCCC-----
Confidence 2233457999999999984 55688999999999999999999999975332 22333333332111
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
... ........+.+++.+||+.||.+||+++|+++
T Consensus 249 --~~~----~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 249 --LLP----GHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp --CCC----SSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred --CCC----ccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 000 00112246889999999999999999999976
No 279
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=7.5e-36 Score=336.63 Aligned_cols=244 Identities=21% Similarity=0.359 Sum_probs=199.2
Q ss_pred HhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCCh---hhHHHHHHHHHHHhcCC--CCceeeEEeEEEec
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNN---NVDNSFRAEILTLGKIR--HRNIVKLYGFCYHQ 880 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~---~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~ 880 (1114)
..++|++.+.||+|+||+||+|++. +++.||||++........ ...+.+.+|+.++++++ ||||+++++++..+
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 4578999999999999999999975 789999999976543221 11234667899999996 59999999999999
Q ss_pred CceEEEEecCCC-CCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEEC-CCCCeEEeeccC
Q 001253 881 GSNLLMYEYMAR-GSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLD-DKFEAHVGDFGL 958 (1114)
Q Consensus 881 ~~~~lv~E~~~~-gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~DfG~ 958 (1114)
+..++||||+.+ ++|.+++.. ...+++..+..++.|+++||+|||+. +|+||||||+||+++ +++.+||+|||+
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~Dfg~ 196 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFITE-RGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDFGS 196 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTT
T ss_pred CcEEEEEEcCCCCccHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEeeCcc
Confidence 999999999986 899999974 35789999999999999999999998 999999999999999 789999999999
Q ss_pred ceecCCCCCCccccccccccccCccccccCCC-CcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccc
Q 001253 959 AKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKV-TEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVS 1037 (1114)
Q Consensus 959 a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~-~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1114)
++..... ......||+.|+|||++.+..+ +.++||||||+++|||++|+.||.... . ......
T Consensus 197 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~------~----~~~~~~--- 260 (320)
T 3a99_A 197 GALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE------E----IIRGQV--- 260 (320)
T ss_dssp CEECCSS---CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------H----HHHCCC---
T ss_pred ccccccc---cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh------h----hhcccc---
Confidence 9876422 2334579999999999987766 678999999999999999999996321 1 111110
Q ss_pred ccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1038 GMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.... .....+.+++.+||+.||++|||++|+++
T Consensus 261 -------~~~~----~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 261 -------FFRQ----RVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp -------CCSS----CCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred -------cccc----cCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0001 11236789999999999999999999976
No 280
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=8.7e-35 Score=336.07 Aligned_cols=263 Identities=20% Similarity=0.266 Sum_probs=199.7
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-----------CCceeeEEe
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-----------HRNIVKLYG 875 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~ 875 (1114)
.++|++.+.||+|+||+||+|++. +++.||||++.... ...+.+.+|+.++++++ ||||+++++
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~----~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~ 93 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK----VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLD 93 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH----HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc----cchhhhhHHHHHHHHhhcccccchhccccchHHHHHH
Confidence 368999999999999999999975 78999999986432 23566788999888876 899999999
Q ss_pred EEEecC----ceEEEEecCCCCCHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEEC----
Q 001253 876 FCYHQG----SNLLMYEYMARGSLGELLHGA-SSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLD---- 946 (1114)
Q Consensus 876 ~~~~~~----~~~lv~E~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~---- 946 (1114)
++...+ ..++||||+ +++|.+++... ...+++..+..++.|++.||+|||+++ +|+||||||+||+++
T Consensus 94 ~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~ 170 (373)
T 1q8y_A 94 HFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDS 170 (373)
T ss_dssp EEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEET
T ss_pred HhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCC
Confidence 998654 679999999 88999999753 346999999999999999999999852 899999999999994
Q ss_pred --CCCCeEEeeccCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCC--CH
Q 001253 947 --DKFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGG--DL 1022 (1114)
Q Consensus 947 --~~~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~--~~ 1022 (1114)
..+.+||+|||+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||....... ..
T Consensus 171 ~~~~~~~kl~Dfg~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~ 246 (373)
T 1q8y_A 171 PENLIQIKIADLGNACWYDEH----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKD 246 (373)
T ss_dssp TTTEEEEEECCCTTCEETTBC----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CH
T ss_pred CcCcceEEEcccccccccCCC----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCCh
Confidence 4458999999999875422 234579999999999999999999999999999999999999997543211 11
Q ss_pred HHHHHHHHh---c--------CCccccccc-----------------ccccCCCcccHHHHHHHHHHHhhccCCCCCCCC
Q 001253 1023 VTWVRNFIR---N--------NSLVSGMLD-----------------ARLNLQDEKTVSHMITVLKIAMLCTNISPFDRP 1074 (1114)
Q Consensus 1023 ~~~~~~~~~---~--------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP 1074 (1114)
...+..... . ......... .........+......+.+++.+||+.||++||
T Consensus 247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp 326 (373)
T 1q8y_A 247 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA 326 (373)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB
T ss_pred HHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccC
Confidence 111111111 0 000000000 000111123455677899999999999999999
Q ss_pred CHHHHHH
Q 001253 1075 TMREVVL 1081 (1114)
Q Consensus 1075 s~~evl~ 1081 (1114)
|++|+++
T Consensus 327 t~~ell~ 333 (373)
T 1q8y_A 327 DAGGLVN 333 (373)
T ss_dssp CHHHHHT
T ss_pred CHHHHhh
Confidence 9999987
No 281
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-35 Score=342.05 Aligned_cols=251 Identities=24% Similarity=0.316 Sum_probs=189.8
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceE
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNL 884 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 884 (1114)
+...+|+..++||+|+||+||.....+|+.||||++...... .+.+|+.+++.+ +|||||++++++.+....|
T Consensus 21 i~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~------~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~ 94 (432)
T 3p23_A 21 VGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFS------FADREVQLLRESDEHPNVIRYFCTEKDRQFQY 94 (432)
T ss_dssp ETTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEE------ECHHHHHHHHHSCCCTTBCCEEEEEEETTEEE
T ss_pred EccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHH------HHHHHHHHHHhccCCCCcCeEEEEEecCCEEE
Confidence 345679999999999999976655667999999999654321 245799999998 7999999999999999999
Q ss_pred EEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC-----CCCeEEeeccCc
Q 001253 885 LMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD-----KFEAHVGDFGLA 959 (1114)
Q Consensus 885 lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~-----~~~~kl~DfG~a 959 (1114)
+||||+++ +|.+++........+..+..++.|+++||+|||+. +|+||||||+||+++. ...+||+|||+|
T Consensus 95 lv~E~~~g-~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a 170 (432)
T 3p23_A 95 IAIELCAA-TLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLC 170 (432)
T ss_dssp EEEECCSE-EHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEE
T ss_pred EEEECCCC-CHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccce
Confidence 99999975 99999986665666667789999999999999999 9999999999999953 335889999999
Q ss_pred eecCCCCC--CccccccccccccCccccc---cCCCCcccchHHHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHHHhcC
Q 001253 960 KVIDMPQS--KSMSAIAGSYGYIAPEYAY---TMKVTEKCDIYSYGVVLLELLT-GRAPVQPLDQGGDLVTWVRNFIRNN 1033 (1114)
Q Consensus 960 ~~~~~~~~--~~~~~~~g~~~y~aPE~~~---~~~~~~~~DvwslGvil~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~ 1033 (1114)
+....... .......||+.|+|||++. ...++.++||||+||++|||++ |..||..... ..........
T Consensus 171 ~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~-----~~~~~~~~~~ 245 (432)
T 3p23_A 171 KKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ-----RQANILLGAC 245 (432)
T ss_dssp ECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT-----HHHHHHTTCC
T ss_pred eeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH-----HHHHHHhccC
Confidence 87643221 2334567999999999997 4567889999999999999999 8899853221 1111111110
Q ss_pred CcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1034 SLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
. ... ..........+.+++.+||+.||.+|||++|+++
T Consensus 246 ~---------~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 246 S---------LDC-LHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp C---------CTT-SCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred C---------ccc-cCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 0 000 1112233456789999999999999999999983
No 282
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=1.1e-35 Score=356.95 Aligned_cols=271 Identities=24% Similarity=0.295 Sum_probs=205.1
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe------cC
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH------QG 881 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~ 881 (1114)
++|++.++||+|+||+||+|+++ +|+.||||++.... .....+.+.+|+.++++++||||+++++++.. .+
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~--~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~ 91 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQEL--SPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPND 91 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCC--CHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTS
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccC--CHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCC
Confidence 68999999999999999999975 68999999987543 33446678899999999999999999998765 66
Q ss_pred ceEEEEecCCCCCHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCC---eEEeec
Q 001253 882 SNLLMYEYMARGSLGELLHGAS--STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFE---AHVGDF 956 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~--~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~Df 956 (1114)
..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++. +||+||
T Consensus 92 ~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~DF 168 (676)
T 3qa8_A 92 LPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDL 168 (676)
T ss_dssp SCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECSC
T ss_pred eEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEccc
Confidence 7799999999999999998543 2688999999999999999999998 9999999999999997765 999999
Q ss_pred cCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHH---HhcC
Q 001253 957 GLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNF---IRNN 1033 (1114)
Q Consensus 957 G~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~---~~~~ 1033 (1114)
|.++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ...|.... ....
T Consensus 169 G~a~~~~~~--~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~---~~~~~~~i~~~~~~~ 243 (676)
T 3qa8_A 169 GYAKELDQG--ELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQ---PVQWHGKVREKSNEH 243 (676)
T ss_dssp CCCCBTTSC--CCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCH---HHHSSTTCC------
T ss_pred ccccccccc--cccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccc---hhhhhhhhhcccchh
Confidence 999876432 233456799999999999999999999999999999999999999965321 11110000 0000
Q ss_pred Cccccccc------ccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHH-----HHHHHHhhhcc
Q 001253 1034 SLVSGMLD------ARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMRE-----VVLMLSESNRR 1089 (1114)
Q Consensus 1034 ~~~~~~~~------~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~e-----vl~~L~~i~~~ 1089 (1114)
........ ................+.+++.+||++||++|||++| ..+.++++...
T Consensus 244 ~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~~ 310 (676)
T 3qa8_A 244 IVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILSL 310 (676)
T ss_dssp CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHHCC
T ss_pred hhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHHhc
Confidence 00000001 1111112223345667999999999999999999988 55666666443
No 283
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=1.6e-34 Score=319.50 Aligned_cols=240 Identities=11% Similarity=0.065 Sum_probs=189.9
Q ss_pred hcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
.++|++.+.||+|+||+||+|++. +|+.||||++...........+.+.+|+..+++++||||+++++++.+++..|+|
T Consensus 30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 109 (286)
T 3uqc_A 30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV 109 (286)
T ss_dssp TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence 367999999999999999999986 5899999999877665555667899999999999999999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||++|++|.++++.. ....++..++.|++.||+|||+. +|+||||||+||+++.++.+||+++|
T Consensus 110 ~e~~~g~~L~~~l~~~---~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~--------- 174 (286)
T 3uqc_A 110 AEWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA--------- 174 (286)
T ss_dssp EECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC---------
T ss_pred EEecCCCCHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc---------
Confidence 9999999999999632 35667889999999999999999 99999999999999999999997443
Q ss_pred CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccC
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNL 1046 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1114)
|++| ++.++|||||||++|||++|+.||........... ...........
T Consensus 175 ------------~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~-----------~~~~~~~~~~~ 224 (286)
T 3uqc_A 175 ------------TMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAP-----------AERDTAGQPIE 224 (286)
T ss_dssp ------------CCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEE-----------CCBCTTSCBCC
T ss_pred ------------ccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHH-----------HHHHhccCCCC
Confidence 3333 67899999999999999999999976543221100 00000000000
Q ss_pred CCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHhhhccCCCc
Q 001253 1047 QDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVLMLSESNRRQGHF 1093 (1114)
Q Consensus 1047 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~~L~~i~~~~~~~ 1093 (1114)
...........+.+++.+||+.||++| |+.|+++.|+++.....+.
T Consensus 225 ~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~~~ 270 (286)
T 3uqc_A 225 PADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVADRT 270 (286)
T ss_dssp HHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC-----
T ss_pred hhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccCCcc
Confidence 000111233468899999999999999 9999999999987665443
No 284
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=331.20 Aligned_cols=246 Identities=20% Similarity=0.301 Sum_probs=190.8
Q ss_pred HHHhcCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCCh---hhHHHHHHHHHHHhcC----CCCceeeEEeE
Q 001253 805 VVATDNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNN---NVDNSFRAEILTLGKI----RHRNIVKLYGF 876 (1114)
Q Consensus 805 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~---~~~~~~~~E~~~l~~l----~h~niv~l~~~ 876 (1114)
....++|++.+.||+|+||+||+|++. +++.||||++........ .....+.+|+.+++++ +||||++++++
T Consensus 27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~ 106 (312)
T 2iwi_A 27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW 106 (312)
T ss_dssp ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence 344578999999999999999999975 789999999976543211 1122355688888888 89999999999
Q ss_pred EEecCceEEEEec-CCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEEC-CCCCeEEe
Q 001253 877 CYHQGSNLLMYEY-MARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLD-DKFEAHVG 954 (1114)
Q Consensus 877 ~~~~~~~~lv~E~-~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~ 954 (1114)
+...+..++|||| +.+++|.+++.. ...+++..+..++.|+++||+|||+. +|+||||||+||+++ .++.+||+
T Consensus 107 ~~~~~~~~~v~e~~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~ 182 (312)
T 2iwi_A 107 FETQEGFMLVLERPLPAQDLFDYITE-KGPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAKLI 182 (312)
T ss_dssp C-----CEEEEECCSSEEEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEEEEC
T ss_pred EecCCeEEEEEEecCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeEEEE
Confidence 9999999999999 789999999974 34689999999999999999999999 999999999999999 88999999
Q ss_pred eccCceecCCCCCCccccccccccccCccccccCCCC-cccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcC
Q 001253 955 DFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVT-EKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNN 1033 (1114)
Q Consensus 955 DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~-~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 1033 (1114)
|||+++..... ......|++.|+|||++.+..+. .++||||+|+++|||++|+.||.... .. ...
T Consensus 183 dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~----~~~- 248 (312)
T 2iwi_A 183 DFGSGALLHDE---PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ------EI----LEA- 248 (312)
T ss_dssp CCSSCEECCSS---CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH------HH----HHT-
T ss_pred EcchhhhcccC---cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH------HH----hhh-
Confidence 99999876432 23455799999999998877664 58999999999999999999996321 11 111
Q ss_pred CcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1034 SLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
... .+......+.+++.+||+.||++|||++|+++
T Consensus 249 ---------~~~----~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 249 ---------ELH----FPAHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp ---------CCC----CCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred ---------ccC----CcccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 011 11112346789999999999999999999986
No 285
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-34 Score=355.79 Aligned_cols=350 Identities=18% Similarity=0.153 Sum_probs=231.5
Q ss_pred CCCCCCCCCCCCCCC-c---cceEEEecCCCccEEEEEeecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCC
Q 001253 50 SNYLGNWNPNDSTPC-G---WIGVNCTTNDFGAVVFSLNLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNC 125 (1114)
Q Consensus 50 ~~~~~~W~~~~~~~C-~---w~gv~C~~~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 125 (1114)
...+++|.+. ++|| . |.++.|+. .+ +. ..........-..+.+++.|++++|.++...+..++.+
T Consensus 6 ~~~l~~~~~~-~~C~~~~~~~~c~~~~~-----~i---~~--~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l 74 (597)
T 3oja_B 6 RYNVKPRQPE-YKCIDSNLQYDCVFYDV-----HI---DM--QTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF 74 (597)
T ss_dssp -----CCCSE-ECCCCC--CCSEEECSC-----EE---CS--SCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHC
T ss_pred cccccCCCCC-CcCcccCcCceeEecCc-----ee---cc--cccccccCcccccCCCceEEEeeCCCCCCcCHHHHccC
Confidence 3457899875 4455 3 65555531 11 11 11111122223356788999999999876555567889
Q ss_pred CCCCEEEccCCCcccccccccccccccceeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccceec
Q 001253 126 SSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRA 205 (1114)
Q Consensus 126 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l 205 (1114)
++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|++++|.+++..+..|+++++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 99999999999999888888999999999999999998877777888888888888888888555555677888888888
Q ss_pred cccccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCcccCccccccccccccchhhcccccccCC
Q 001253 206 GQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQVGQ 285 (1114)
Q Consensus 206 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~~ 285 (1114)
++|.+.+..|..|+++++|++|+|++|.+++. .++.+++|+.|++++|.+++ +...++|+.|++++|.+...
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV 226 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc
Confidence 88887777777777777788888887777743 24556677777777776663 22334455555555544322
Q ss_pred chhhhcCCCccceeeecccccccccCccccccccccccccccccCCCCCchhhhcccccceeecccccccCccccccccc
Q 001253 286 LPKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELTTL 365 (1114)
Q Consensus 286 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 365 (1114)
.+ .+ .++|+.|++++|.+++ +..+..+++|+.|+|++|.+++..|..|..+
T Consensus 227 ~~-------------------------~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 227 RG-------------------------PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp EC-------------------------SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred cc-------------------------cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 11 11 1345555555555543 2445566666666666666666666666666
Q ss_pred ccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeee
Q 001253 366 KNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNL 445 (1114)
Q Consensus 366 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~L 445 (1114)
++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.|++.. +..+++|+.|++
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l 352 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL 352 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence 777777777777664 3555566677777777777766 45555666777777777777776542 455677888888
Q ss_pred ccCCccC
Q 001253 446 ETNKLTG 452 (1114)
Q Consensus 446 s~N~l~~ 452 (1114)
++|.+.+
T Consensus 353 ~~N~~~~ 359 (597)
T 3oja_B 353 SHNDWDC 359 (597)
T ss_dssp CSSCEEH
T ss_pred eCCCCCC
Confidence 8888764
No 286
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=1.7e-34 Score=339.22 Aligned_cols=250 Identities=24% Similarity=0.318 Sum_probs=186.8
Q ss_pred cCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 887 (1114)
+.|...++||+|+||+||.+...+|+.||||++.... .+.+.+|+.+++++ +||||+++++++.+++..|+||
T Consensus 15 ~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~------~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~ 88 (434)
T 2rio_A 15 NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF------CDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIAL 88 (434)
T ss_dssp SCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG------HHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred heeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH------HHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEE
Confidence 4456668899999999987777789999999986532 34567899999876 8999999999999999999999
Q ss_pred ecCCCCCHHHHhccCCCC------CCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCC-------------
Q 001253 888 EYMARGSLGELLHGASST------LDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDK------------- 948 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~------l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~------------- 948 (1114)
||++ |+|.+++...... .++..+..++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 89 E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~ 164 (434)
T 2rio_A 89 ELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAEN 164 (434)
T ss_dssp CCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCS
T ss_pred ecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCc
Confidence 9996 5999999754321 12334577999999999999999 99999999999999754
Q ss_pred CCeEEeeccCceecCCCCCC---ccccccccccccCcccccc-------CCCCcccchHHHHHHHHHHHh-CCCCCCCCC
Q 001253 949 FEAHVGDFGLAKVIDMPQSK---SMSAIAGSYGYIAPEYAYT-------MKVTEKCDIYSYGVVLLELLT-GRAPVQPLD 1017 (1114)
Q Consensus 949 ~~~kl~DfG~a~~~~~~~~~---~~~~~~g~~~y~aPE~~~~-------~~~~~~~DvwslGvil~el~t-g~~p~~~~~ 1017 (1114)
+.+||+|||+++........ ......||+.|+|||++.+ ..++.++||||+||++|||++ |+.||....
T Consensus 165 ~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~ 244 (434)
T 2rio_A 165 LRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKY 244 (434)
T ss_dssp CEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTT
T ss_pred eEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCch
Confidence 48999999999976533221 2234579999999999875 668999999999999999999 999996432
Q ss_pred CCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1018 QGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1018 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
.. .... ... ... .... ...........+.+++.+||+.||.+|||+.|+++
T Consensus 245 ~~--~~~i----~~~-~~~----~~~~--~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 245 SR--ESNI----IRG-IFS----LDEM--KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp TH--HHHH----HHT-CCC----CCCC--TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hh--HHHH----hcC-CCC----cccc--cccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 21 1111 111 000 0000 11123445668899999999999999999999985
No 287
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=5.2e-35 Score=329.96 Aligned_cols=284 Identities=20% Similarity=0.241 Sum_probs=192.7
Q ss_pred hcCCCcchHHHHHHhHhhc-cCCCCCCCCCC---CCCCCCCccceEEEecC------CCccEEEEEeecCCCcCcccCCC
Q 001253 28 TKGLVNIEGQILLLIKSKL-VDNSNYLGNWN---PNDSTPCGWIGVNCTTN------DFGAVVFSLNLTKMNLSGYLSPN 97 (1114)
Q Consensus 28 ~~~~~~~~~~~ll~~k~~~-~~~~~~~~~W~---~~~~~~C~w~gv~C~~~------~~~~~v~~l~l~~~~l~g~~~~~ 97 (1114)
..++..+|++||++||+++ .|+.+.+++|. ....++|.|.|++|... ....+|+.|+|+++++. .+|+.
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 3467789999999999998 57777889994 34566899999999531 00123445555555554 44445
Q ss_pred CCCCCccCEEEecCCcccCCCCcccCCCCCCCEEEccCCCcccccccccccccccceeccccccccCCCCcccccCcccc
Q 001253 98 IGGLVHLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALS 177 (1114)
Q Consensus 98 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 177 (1114)
++.+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..|+++++|++|+|++|++.+.+|..++..
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~---- 173 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST---- 173 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE----
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc----
Confidence 555555555555555554 45555555555555555555555 345455555555555555554444444443320
Q ss_pred hhhhcccccCCCCCCCccccccccceeccccccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCc
Q 001253 178 QLVAYSNNISGSLPPTLGNLKRLKSFRAGQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQ 257 (1114)
Q Consensus 178 ~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 257 (1114)
..+..+.++++|++|++++|.++ .+|..++++++|++|+|++|+++ .+|..++.+++|++|+|++|.
T Consensus 174 -----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 174 -----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp -----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCT
T ss_pred -----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCc
Confidence 01122334778888888888877 67777888888888888888887 466678888888888888888
Q ss_pred ccCccccccccccccchhhcccccccCCchhhhcCCCccceeeecccccccccCccccccccccccccccccCC
Q 001253 258 LSGVIPKELGNCTSLETLALYDNKQVGQLPKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLI 331 (1114)
Q Consensus 258 l~~~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 331 (1114)
+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|+|++|++.+.+|..++.+++++.+++..+.+.
T Consensus 241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888776554
No 288
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.1e-33 Score=323.36 Aligned_cols=306 Identities=25% Similarity=0.350 Sum_probs=173.3
Q ss_pred hcccccceeecccccccCcccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceE
Q 001253 339 SKILGLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWV 418 (1114)
Q Consensus 339 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 418 (1114)
..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ |..+ ++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l------------------------~~L~~ 92 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNL------------------------VKLTN 92 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTC------------------------TTCCE
T ss_pred hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcC------------------------CcCCE
Confidence 3445555555555555432 1 24445555555555555553322 4444 44555
Q ss_pred EEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccC
Q 001253 419 VDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQF 498 (1114)
Q Consensus 419 L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 498 (1114)
|++++|.+++. ..+..+++|++|++++|++++..+ +..+++|++|++++|..... +..+..+++|++|++++|.+
T Consensus 93 L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 93 LYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKV 167 (347)
T ss_dssp EECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCC
T ss_pred EEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCc
Confidence 55555544432 234455555555555555553222 55555555555555543322 22355556666666666665
Q ss_pred CCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhh
Q 001253 499 SGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREI 578 (1114)
Q Consensus 499 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 578 (1114)
.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +
T Consensus 168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 53332 5556666666666666653322 5556666666666666653322 5556666666666666664322 5
Q ss_pred hhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhH
Q 001253 579 GSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLE 658 (1114)
Q Consensus 579 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~ 658 (1114)
..+++|++|++++|.+++. ..+..+++|+.|++++|++++. +.+..+++|+ .|+|++|++++..|..++.+++|+
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN-SLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS-EEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC-EEECcCCcCCCcChhHhhccccCC
Confidence 6666666666666666642 3456666666666666666643 3466666666 577777777766666677777777
Q ss_pred hhhccCcccccCCCCccccccccceEEeccCccc
Q 001253 659 YLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLT 692 (1114)
Q Consensus 659 ~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~ 692 (1114)
+|+|++|++++.+| +..+++|+.|++++|+++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777777776666 667777777777777653
No 289
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.1e-33 Score=317.09 Aligned_cols=307 Identities=23% Similarity=0.334 Sum_probs=208.6
Q ss_pred hcCCCccceeeecccccccccCccccccccccccccccccCCCCCchhhhcccccceeecccccccCcccccccccccCC
Q 001253 290 LGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELTTLKNLT 369 (1114)
Q Consensus 290 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 369 (1114)
+..+++|++|++++|.+. .+| .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.++.. ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 345566666777666665 233 36666666777777766664333 66677777777777777653 2467777777
Q ss_pred EEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCC
Q 001253 370 KLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNK 449 (1114)
Q Consensus 370 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~ 449 (1114)
+|++++|.+++..+ +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 77777777775433 66777777777777755544333 6677777777777777765443 6677777777777777
Q ss_pred ccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCcc
Q 001253 450 LTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPRE 529 (1114)
Q Consensus 450 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 529 (1114)
+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 774333 6677777777777777774433 6777777777777777775443 77777777777777777743 45
Q ss_pred ccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCccccccccccccc
Q 001253 530 VGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLT 609 (1114)
Q Consensus 530 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 609 (1114)
+..+++|+.|++++|.+++ + ..+..+++|+.|++++|++++..|..++.+++|++|++++|++++..| +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred HhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 6777777777777777774 3 346667777777777777777777777777777777777777776555 66777777
Q ss_pred ccccCCCcCC
Q 001253 610 ELQMGGNSFS 619 (1114)
Q Consensus 610 ~L~ls~N~l~ 619 (1114)
+|++++|+|+
T Consensus 337 ~L~l~~N~i~ 346 (347)
T 4fmz_A 337 SADFANQVIK 346 (347)
T ss_dssp EESSSCC---
T ss_pred eeehhhhccc
Confidence 7777777764
No 290
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.2e-33 Score=351.06 Aligned_cols=240 Identities=24% Similarity=0.315 Sum_probs=195.8
Q ss_pred hcCCcCCceecccCCeEEEEEEeC--CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEecCc---
Q 001253 808 TDNFDERFVIGRGACGTVYRAVLR--TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYHQGS--- 882 (1114)
Q Consensus 808 ~~~~~~~~~lG~G~~g~Vy~~~~~--~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~--- 882 (1114)
.++|++.++||+|+||+||+|+++ +|+.||||++.... .......+.+|+.++++++||||+++++++...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~--~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~ 156 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSG--DAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGD 156 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSC--CHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSC
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccC--CHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCC
Confidence 378999999999999999999986 68999999986532 33445678899999999999999999999988766
Q ss_pred --eEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 883 --NLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 883 --~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
.|+||||++|++|.+++.. .+++.++..++.|+++||+|||+. +|+||||||+||+++.+ .+||+|||+++
T Consensus 157 ~~~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~ 229 (681)
T 2pzi_A 157 PVGYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVS 229 (681)
T ss_dssp EEEEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCE
T ss_pred ceeEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccch
Confidence 6999999999999998863 789999999999999999999999 99999999999999986 99999999998
Q ss_pred ecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccc
Q 001253 961 VIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGML 1040 (1114)
Q Consensus 961 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1114)
..... ....||+.|+|||++.+. ++.++|||||||++|+|++|..||....... +
T Consensus 230 ~~~~~-----~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~------------------~- 284 (681)
T 2pzi_A 230 RINSF-----GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDG------------------L- 284 (681)
T ss_dssp ETTCC-----SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSS------------------C-
T ss_pred hcccC-----CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCccccccc------------------c-
Confidence 76432 345799999999998765 4889999999999999999988876322110 0
Q ss_pred cccccCCCcccHHHHHHHHHHHhhccCCCCCCCC-CHHHHHHHHHhh
Q 001253 1041 DARLNLQDEKTVSHMITVLKIAMLCTNISPFDRP-TMREVVLMLSES 1086 (1114)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RP-s~~evl~~L~~i 1086 (1114)
. ...........+.+++.+||+.||++|| +++++.+.+..+
T Consensus 285 ----~-~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 326 (681)
T 2pzi_A 285 ----P-EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGV 326 (681)
T ss_dssp ----C-TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred ----c-ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHH
Confidence 0 0111122335688999999999999999 567777777665
No 291
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=8e-34 Score=331.14 Aligned_cols=241 Identities=17% Similarity=0.174 Sum_probs=180.9
Q ss_pred cCCcCCceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCC-Cce---------e------
Q 001253 809 DNFDERFVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRH-RNI---------V------ 871 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h-~ni---------v------ 871 (1114)
.+|...++||+|+||+||+|++. +|+.||||++...........+.+++|+.+++.++| ++. +
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 45778889999999999999965 799999999985555444456779999999999977 211 1
Q ss_pred e------EEeEEEe-----cCceEEEEecCCCCCHHHHhc------cCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 001253 872 K------LYGFCYH-----QGSNLLMYEYMARGSLGELLH------GASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIF 934 (1114)
Q Consensus 872 ~------l~~~~~~-----~~~~~lv~E~~~~gsL~~~l~------~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~iv 934 (1114)
. +..++.. ....+++|+++ +++|.++++ .....+++..+..++.|+++||+|||+. +|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ii 233 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GLV 233 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 1 1111111 12356777766 569999984 2344678889999999999999999999 999
Q ss_pred ecCCCCCCeEECCCCCeEEeeccCceecCCCCCCccccccccccccCcccc----------ccCCCCcccchHHHHHHHH
Q 001253 935 HRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYA----------YTMKVTEKCDIYSYGVVLL 1004 (1114)
Q Consensus 935 H~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~----------~~~~~~~~~DvwslGvil~ 1004 (1114)
||||||+|||++.++.+||+|||+++..... ....+| +.|+|||++ .+..++.++|||||||++|
T Consensus 234 HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~ 308 (413)
T 3dzo_A 234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIY 308 (413)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETTEE----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHH
T ss_pred cCCcccceEEEecCCeEEEEeccceeecCCc----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHH
Confidence 9999999999999999999999999875422 345577 999999999 5566888999999999999
Q ss_pred HHHhCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 001253 1005 ELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVSGMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVV 1080 (1114)
Q Consensus 1005 el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl 1080 (1114)
||++|+.||........ . ...+...... ...+.+++.+||+.||++||++.|++
T Consensus 309 elltg~~Pf~~~~~~~~--------------~----~~~~~~~~~~----~~~~~~li~~~l~~dP~~Rpt~~~~l 362 (413)
T 3dzo_A 309 WIWCADLPNTDDAALGG--------------S----EWIFRSCKNI----PQPVRALLEGFLRYPKEDRLLPLQAM 362 (413)
T ss_dssp HHHHSSCCCCTTGGGSC--------------S----GGGGSSCCCC----CHHHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred HHHHCCCCCCCcchhhh--------------H----HHHHhhcccC----CHHHHHHHHHHccCChhhCcCHHHHH
Confidence 99999999975432111 1 1111111111 24688999999999999999977764
No 292
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=6.1e-33 Score=309.76 Aligned_cols=229 Identities=22% Similarity=0.284 Sum_probs=178.6
Q ss_pred cCCcCC-ceecccCCeEEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHH-hcCCCCceeeEEeEEEe----cC
Q 001253 809 DNFDER-FVIGRGACGTVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTL-GKIRHRNIVKLYGFCYH----QG 881 (1114)
Q Consensus 809 ~~~~~~-~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~ 881 (1114)
++|.+. +.||+|+||+||+|+.+ +++.||+|++.. ...+.+|+.++ +..+||||+++++++.. ..
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~--------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 88 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD--------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRK 88 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC--------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc--------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCc
Confidence 567776 77999999999999975 789999999853 23466788877 66699999999999987 66
Q ss_pred ceEEEEecCCCCCHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECC---CCCeEEeecc
Q 001253 882 SNLLMYEYMARGSLGELLHGAS-STLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDD---KFEAHVGDFG 957 (1114)
Q Consensus 882 ~~~lv~E~~~~gsL~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~DfG 957 (1114)
..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||
T Consensus 89 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg 165 (299)
T 3m2w_A 89 CLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFG 165 (299)
T ss_dssp EEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCT
T ss_pred eEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEeccc
Confidence 7899999999999999998543 4799999999999999999999999 9999999999999998 7889999999
Q ss_pred CceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHhcCCccc
Q 001253 958 LAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQPLDQGGDLVTWVRNFIRNNSLVS 1037 (1114)
Q Consensus 958 ~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1114)
++.... +..++.++||||+||++|||++|+.||........ ......
T Consensus 166 ~a~~~~-----------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~----------~~~~~~ 212 (299)
T 3m2w_A 166 FAKETT-----------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI----------SPGMKT 212 (299)
T ss_dssp TCEECT-----------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-----------------CCSCC
T ss_pred cccccc-----------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhh----------hHHHHH
Confidence 987542 13467889999999999999999999965432110 000111
Q ss_pred ccccccccCCCcccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 001253 1038 GMLDARLNLQDEKTVSHMITVLKIAMLCTNISPFDRPTMREVVL 1081 (1114)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~evl~ 1081 (1114)
....................+.+++.+||+.||++|||+.|+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 256 (299)
T 3m2w_A 213 RIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN 256 (299)
T ss_dssp SSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 11111111110001123457889999999999999999999987
No 293
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=2e-32 Score=310.39 Aligned_cols=288 Identities=20% Similarity=0.256 Sum_probs=163.3
Q ss_pred cCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeec
Q 001253 367 NLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLE 446 (1114)
Q Consensus 367 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls 446 (1114)
+++.+++++|.++ .+|..+. ++|++|++++|.+.+..+..|..+++|++|+|++|++++..|..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4666666666665 3343331 345555555555554444445555555555555555554444444444445555554
Q ss_pred cCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceec--c
Q 001253 447 TNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFT--G 524 (1114)
Q Consensus 447 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~ 524 (1114)
+|+++ .+|..+. ++|++|++++|++++..+..|.++++|+.|++++|.++ +
T Consensus 111 ~n~l~-------------------------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 111 KNHLV-------------------------EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp SSCCC-------------------------SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred CCcCC-------------------------ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC
Confidence 44444 3333332 45555555555555444444555555555555555553 2
Q ss_pred CCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccc
Q 001253 525 ELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGN 604 (1114)
Q Consensus 525 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 604 (1114)
..|..+..+ +|++|++++|+++ .+|..+. ++|+.|++++|++++..|..+..+++|++|+|++|++++..+..+..
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred CCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 445555555 5555555555555 3444333 45566666666665555555666666666666666666555555666
Q ss_pred cccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccc------hhhhHhhhccCcccc--cCCCCccc
Q 001253 605 LSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGN------LILLEYLLLNNNHLS--GEIPGSFV 676 (1114)
Q Consensus 605 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~--g~ip~~~~ 676 (1114)
+++|++|+|++|+++ .+|..+..++.|+ .|+|++|++++..+..|.. ...|+.|++++|+++ +..|..|.
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~ 317 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQ-VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTTGGGCTTCC-EEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCEEECCCCcCe-ecChhhhcCccCC-EEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc
Confidence 666666666666665 5555566666665 5666666666555555543 246888899999888 67888888
Q ss_pred cccccceEEeccCc
Q 001253 677 NLSSLLGCNFSYNN 690 (1114)
Q Consensus 677 ~l~~l~~l~ls~N~ 690 (1114)
.+++|+.+++++|+
T Consensus 318 ~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 318 CVTDRLAIQFGNYK 331 (332)
T ss_dssp TBCCSTTEEC----
T ss_pred ccchhhhhhccccc
Confidence 99999999998874
No 294
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=3.8e-32 Score=307.96 Aligned_cols=296 Identities=18% Similarity=0.195 Sum_probs=192.5
Q ss_pred ccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeee
Q 001253 366 KNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNL 445 (1114)
Q Consensus 366 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~L 445 (1114)
.+++.++++++.++ .+|..+. +++++|++++|++.+..+..|..+++|++|+|++|++++..|..|..+++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 46888888888887 4554442 56777888888777766667777777777777777777766777777777777777
Q ss_pred ccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCC--CccccccccccCcEEEecCceec
Q 001253 446 ETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSG--PIPTEIGNCNALQRLHLSDNYFT 523 (1114)
Q Consensus 446 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~ 523 (1114)
++|+++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|+++. ..+..+.++++|++|++++|+++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 777777 3454443 567777777777776666666777777777777777642 55566666677777777777666
Q ss_pred cCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCccccccc
Q 001253 524 GELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIG 603 (1114)
Q Consensus 524 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 603 (1114)
. +|..+. ++|++|++++|++++..|..+..+++|+.|+|++|++++..+..+..+++|++|+|++|+++ .+|..+.
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 3 444332 56666666666666555556666666666666666666555556666666666666666666 5555666
Q ss_pred ccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCccccc--CCCCcccccccc
Q 001253 604 NLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSG--EIPGSFVNLSSL 681 (1114)
Q Consensus 604 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~l~~l 681 (1114)
.+++|++|++++|+|++..+..|..... ......|+.|++++|++.. ..|..|..+.++
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~-------------------~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGY-------------------NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSC-------------------CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred cCCCcCEEECCCCcCCccChhhcCCccc-------------------ccccccccceEeecCcccccccCccccccccce
Confidence 6666666666666666444333322100 0112456778888888763 566778888888
Q ss_pred ceEEeccCc
Q 001253 682 LGCNFSYNN 690 (1114)
Q Consensus 682 ~~l~ls~N~ 690 (1114)
+.+++++|+
T Consensus 322 ~~l~L~~N~ 330 (330)
T 1xku_A 322 AAVQLGNYK 330 (330)
T ss_dssp GGEEC----
T ss_pred eEEEecccC
Confidence 888888874
No 295
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.98 E-value=1.2e-33 Score=321.05 Aligned_cols=245 Identities=14% Similarity=0.144 Sum_probs=187.7
Q ss_pred HhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCC-----ChhhHHHHHHHHHHHhcCC---------CCceee
Q 001253 807 ATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREG-----NNNVDNSFRAEILTLGKIR---------HRNIVK 872 (1114)
Q Consensus 807 ~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~-----~~~~~~~~~~E~~~l~~l~---------h~niv~ 872 (1114)
..++|++.++||+|+||+||+|++ +|+.||||++...... .....+.+.+|+.+++.++ ||||++
T Consensus 18 ~~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~ 96 (336)
T 2vuw_A 18 PTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG 96 (336)
T ss_dssp CHHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred ccccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence 346799999999999999999998 5899999999876432 2233467888999888885 777777
Q ss_pred EEeEEE-----------------e-------------cCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHH
Q 001253 873 LYGFCY-----------------H-------------QGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGL 922 (1114)
Q Consensus 873 l~~~~~-----------------~-------------~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L 922 (1114)
+.+++. + .+..|+||||+++|++.+.+.+ ..+++..+..++.|++.||
T Consensus 97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL 174 (336)
T 2vuw_A 97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASL 174 (336)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHH
T ss_pred hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHH
Confidence 777643 2 6788999999999977666642 5689999999999999999
Q ss_pred HHHH-hCCCCCeEecCCCCCCeEECCCC--------------------CeEEeeccCceecCCCCCCccccccccccccC
Q 001253 923 SYLH-HDCKPRIFHRDIKSNNILLDDKF--------------------EAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIA 981 (1114)
Q Consensus 923 ~~LH-~~~~~~ivH~Dlk~~Nill~~~~--------------------~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~a 981 (1114)
+||| +. +|+||||||+|||++.++ .+||+|||+|+.... ...+||+.|+|
T Consensus 175 ~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~------~~~~gt~~y~a 245 (336)
T 2vuw_A 175 AVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD------GIVVFCDVSMD 245 (336)
T ss_dssp HHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET------TEEECCCCTTC
T ss_pred HHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC------CcEEEeecccC
Confidence 9999 88 999999999999999887 899999999997642 23479999999
Q ss_pred ccccccCCCCcccchHHHHHH-HHHHHhCCCCCCCCCCCCCHHHHHHHH-HhcCCcccccccccccCCCcccHHHHHHHH
Q 001253 982 PEYAYTMKVTEKCDIYSYGVV-LLELLTGRAPVQPLDQGGDLVTWVRNF-IRNNSLVSGMLDARLNLQDEKTVSHMITVL 1059 (1114)
Q Consensus 982 PE~~~~~~~~~~~DvwslGvi-l~el~tg~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1059 (1114)
||++.+.. +.++||||+|++ .+++++|..||... .+.....+. ...... . ..............+.
T Consensus 246 PE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~----~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~s~~~~ 313 (336)
T 2vuw_A 246 EDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV----LWLHYLTDKMLKQMTF-----K--TKCNTPAMKQIKRKIQ 313 (336)
T ss_dssp SGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH----HHHHHHHHHHHHTCCC-----S--SCCCSHHHHHHHHHHH
T ss_pred hhhhcCCC-ccceehhhhhCCCCcccccccCCCcch----hhhhHHHHhhhhhhcc-----C--cccchhhhhhcCHHHH
Confidence 99998776 899999998777 77888999988421 000111111 111000 0 0111222345667899
Q ss_pred HHHhhccCCCCCCCCCHHHHH
Q 001253 1060 KIAMLCTNISPFDRPTMREVV 1080 (1114)
Q Consensus 1060 ~li~~cl~~dP~~RPs~~evl 1080 (1114)
+++.+||+.| |++|++
T Consensus 314 dli~~~L~~d-----sa~e~l 329 (336)
T 2vuw_A 314 EFHRTMLNFS-----SATDLL 329 (336)
T ss_dssp HHHHHGGGSS-----SHHHHH
T ss_pred HHHHHHhccC-----CHHHHH
Confidence 9999999976 898887
No 296
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.1e-31 Score=304.51 Aligned_cols=266 Identities=20% Similarity=0.267 Sum_probs=121.9
Q ss_pred CCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeecc
Q 001253 368 LTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLET 447 (1114)
Q Consensus 368 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~ 447 (1114)
|+.|+|++|.+++..+..|..+++|++|++++|++.+..|..|..+++|++|+|++|+++ .+|..+. ++|++|++++
T Consensus 56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~ 132 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHD 132 (332)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCS
T ss_pred CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCC
Confidence 333333333333333333333333333333333333333333333444444444444443 2222222 3444444444
Q ss_pred CCccCCcCcccccCCcceEEeeccceee--ccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccC
Q 001253 448 NKLTGSIPTGVTRCKSLVQLRLGGNSFT--GSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGE 525 (1114)
Q Consensus 448 N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 525 (1114)
|++++..+..+..+++|++|++++|.++ +..|..+..+ +|++|++++|++++ +|..+. ++|++|+|++|++++.
T Consensus 133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAI 208 (332)
T ss_dssp SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCC
T ss_pred CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCcc
Confidence 4444333333444444444444444443 2334444444 45555555555542 333222 4455555555555544
Q ss_pred CCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccc-
Q 001253 526 LPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGN- 604 (1114)
Q Consensus 526 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~- 604 (1114)
.+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence 4455555555555555555555444444555555555555555555 44555555555555555555555444444332
Q ss_pred -----cccccccccCCCcCC--CCCChhhcCcchhhHHhhccccc
Q 001253 605 -----LSRLTELQMGGNSFS--GGIPAELGSLSSLQIALNLSYNN 642 (1114)
Q Consensus 605 -----l~~L~~L~ls~N~l~--~~~p~~~~~l~~L~~~L~Ls~N~ 642 (1114)
..+|+.|++++|++. +..|..|..++.|+ .++|++|+
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~-~l~l~~n~ 331 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL-AIQFGNYK 331 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST-TEEC----
T ss_pred ccccccccccceEeecCcccccccCcccccccchhh-hhhccccc
Confidence 244566666666665 44555566666665 46666553
No 297
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.9e-31 Score=300.68 Aligned_cols=288 Identities=20% Similarity=0.248 Sum_probs=198.6
Q ss_pred ccceeecccccccCcccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEee
Q 001253 343 GLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLS 422 (1114)
Q Consensus 343 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 422 (1114)
+++.++++++.++. +|..+. ++|+.|+|++|++++..+..|..+++|++|++++|++.+..|..|..+++|++|+|+
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 45555555555553 233332 456667777777666655566666777777777777766666667777777777777
Q ss_pred cccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeec--cCCchhhccccccEeecccccCCC
Q 001253 423 DNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTG--SFPSDLCKLANLSTVELDQNQFSG 500 (1114)
Q Consensus 423 ~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~ 500 (1114)
+|+++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|+++.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 77776 3444433 577777777777776666667777788888888887753 667777888888888888888873
Q ss_pred CccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhh
Q 001253 501 PIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGS 580 (1114)
Q Consensus 501 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 580 (1114)
+|..+. ++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 555443 77888888888888777788888888888888888888666667778888888888888887 77778888
Q ss_pred cccCCeeeccCccCCCcccccccc------cccccccccCCCcCCC--CCChhhcCcchhhHHhhcccc
Q 001253 581 LFQLELLKLSENELSGSIPVQIGN------LSRLTELQMGGNSFSG--GIPAELGSLSSLQIALNLSYN 641 (1114)
Q Consensus 581 l~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~~L~Ls~N 641 (1114)
+++|++|++++|++++..+..|.. ...|+.|++++|++.. ..|..|..+..++ .++|++|
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~-~l~L~~N 329 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA-AVQLGNY 329 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG-GEEC---
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccccee-EEEeccc
Confidence 888888888888888666665543 3566777777777652 2333444444444 3444443
No 298
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.3e-35 Score=349.98 Aligned_cols=383 Identities=20% Similarity=0.124 Sum_probs=205.8
Q ss_pred CccceeeccccccCCCCccc-ccccccccEEEecCCcccC----ccccccccccccchhhcccccccCCchhhhc-CCC-
Q 001253 222 ESLQYLGLAQNQLSGEIPKE-IGMLKYLTDVILWGNQLSG----VIPKELGNCTSLETLALYDNKQVGQLPKELG-SIG- 294 (1114)
Q Consensus 222 ~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~-~l~- 294 (1114)
++|++|+|++|+++...... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+....+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 35666666666665332222 5556666666666666653 2344555556666666666665544333332 233
Q ss_pred ---ccceeeeccccccc----ccCccccccccccccccccccCCCCCchhhhc-----ccccceeecccccccCcc----
Q 001253 295 ---SLKYLYIYRNELNG----TIPREIGKLSSALEIDFSENSLIGEIPVELSK-----ILGLELLYLFENKLTGVI---- 358 (1114)
Q Consensus 295 ---~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~-----l~~L~~L~L~~N~l~~~~---- 358 (1114)
+|++|+|++|+++. .+|..+..+++|++|++++|.+.+..+..+.. .++|+.|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 46666666666652 34555555666666666666554433333222 234666666666555432
Q ss_pred cccccccccCCEEEcccccccccccCcccc-ccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCC----CCcc
Q 001253 359 PVELTTLKNLTKLDLSINSLTGTIPLGFQY-LTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGK----IPRH 433 (1114)
Q Consensus 359 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~ 433 (1114)
+..+..+++|++|++++|.+++..+..+.. +. ...++|++|+|++|.+++. ++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK--------------------DSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH--------------------HSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHh--------------------cCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 333444556666666666655433222211 00 0122444444444444432 2344
Q ss_pred ccccCccceeeeccCCccCCc-----CcccccCCcceEEeeccceeecc----CCchhhccccccEeecccccCCCCccc
Q 001253 434 ICRNTSLIFLNLETNKLTGSI-----PTGVTRCKSLVQLRLGGNSFTGS----FPSDLCKLANLSTVELDQNQFSGPIPT 504 (1114)
Q Consensus 434 ~~~~~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~ 504 (1114)
+..+++|++|++++|++++.. +..+..+++|++|++++|++++. ++..+..+++|++|++++|.+++..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 444455555555555554321 11122355666666666666543 455555566666666666666543333
Q ss_pred cccc-----cccCcEEEecCceeccC----CCccccCCCCcceeecccccccccccccccc-----cccceEEECccccc
Q 001253 505 EIGN-----CNALQRLHLSDNYFTGE----LPREVGNLSNLVTFNVSSNFLTGRIPLEIFS-----CKMLQRLDLSWNKF 570 (1114)
Q Consensus 505 ~~~~-----l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l 570 (1114)
.+.. .++|++|+|++|.+++. ++..+..+++|++|+|++|.+++..+..+.. .++|+.|+|++|++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 3322 25677777777776644 3455556677777777777776544443332 56777777777777
Q ss_pred cC----CCchhhhhcccCCeeeccCccCCCccccccc-----ccccccccccCCCcCCCCCCh
Q 001253 571 VG----ALPREIGSLFQLELLKLSENELSGSIPVQIG-----NLSRLTELQMGGNSFSGGIPA 624 (1114)
Q Consensus 571 ~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~ls~N~l~~~~p~ 624 (1114)
++ .+|..+..+++|++|++++|++++.-...+. ...+|+.|++.+|.+....+.
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 75 5677777777888888888877743111111 123456666666655533333
No 299
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-34 Score=344.88 Aligned_cols=357 Identities=23% Similarity=0.162 Sum_probs=252.5
Q ss_pred cccccEEEecCCcccCccccc-cccccccchhhcccccccC----CchhhhcCCCccceeeecccccccccCcccc-ccc
Q 001253 245 LKYLTDVILWGNQLSGVIPKE-LGNCTSLETLALYDNKQVG----QLPKELGSIGSLKYLYIYRNELNGTIPREIG-KLS 318 (1114)
Q Consensus 245 l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~ 318 (1114)
+++|++|+|++|+++...... +..+++|++|++++|.+.. .++..+..+++|++|+|++|.+.+..+..+. .++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 356778888888877544333 6667777777777777654 2455566667777777777766543332222 122
Q ss_pred cccccccccccCCCCCchhhhcccccceeecccccccC----cccccccccccCCEEEcccccccccccCccc-----cc
Q 001253 319 SALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTG----VIPVELTTLKNLTKLDLSINSLTGTIPLGFQ-----YL 389 (1114)
Q Consensus 319 ~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l 389 (1114)
. ...+|++|++++|+++. .++..+..+++|++|+|++|.+++..+..+. ..
T Consensus 82 ~--------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 82 T--------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141 (461)
T ss_dssp S--------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred h--------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence 0 00035555555555442 2344555555666666666655533332221 13
Q ss_pred cceeeeeccCCcccCCC----CCCCCcCccceEEEeecccccCCCCccccc-----cCccceeeeccCCccCC----cCc
Q 001253 390 TNLIMLQLFDNSLVGGI----PQRLGAYSQLWVVDLSDNHLTGKIPRHICR-----NTSLIFLNLETNKLTGS----IPT 456 (1114)
Q Consensus 390 ~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----~~~L~~L~Ls~N~l~~~----~p~ 456 (1114)
++|++|++++|++.+.. +..+..+++|++|+|++|.+++..+..+.. .++|++|++++|.+++. ++.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 45666666666665432 344556678888888888887654444443 56999999999999974 577
Q ss_pred ccccCCcceEEeeccceeeccCC-----chhhccccccEeecccccCCCC----ccccccccccCcEEEecCceeccCCC
Q 001253 457 GVTRCKSLVQLRLGGNSFTGSFP-----SDLCKLANLSTVELDQNQFSGP----IPTEIGNCNALQRLHLSDNYFTGELP 527 (1114)
Q Consensus 457 ~~~~l~~L~~L~L~~N~l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p 527 (1114)
.+..+++|++|++++|.+++... ..+..+++|++|++++|++++. ++..+..+++|++|+|++|.+++..+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 78889999999999999986432 2233588999999999999854 67778889999999999999986555
Q ss_pred ccccC-----CCCcceeeccccccccc----ccccccccccceEEECccccccCCCchhhhh-----cccCCeeeccCcc
Q 001253 528 REVGN-----LSNLVTFNVSSNFLTGR----IPLEIFSCKMLQRLDLSWNKFVGALPREIGS-----LFQLELLKLSENE 593 (1114)
Q Consensus 528 ~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~ 593 (1114)
..+.. .++|++|++++|.+++. ++..+..+++|+.|+|++|++++..+..+.. .++|++|+|++|+
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 44443 36999999999999865 5666777899999999999998776666654 6799999999999
Q ss_pred CCC----cccccccccccccccccCCCcCCCC
Q 001253 594 LSG----SIPVQIGNLSRLTELQMGGNSFSGG 621 (1114)
Q Consensus 594 l~~----~~p~~~~~l~~L~~L~ls~N~l~~~ 621 (1114)
+++ .+|..+..+++|++|++++|++++.
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 996 7888899999999999999999864
No 300
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-30 Score=298.86 Aligned_cols=276 Identities=20% Similarity=0.170 Sum_probs=145.3
Q ss_pred eeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccce
Q 001253 394 MLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNS 473 (1114)
Q Consensus 394 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 473 (1114)
..++++|.++. +|..+. ++|++|+|++|++++..+..+..+++|++|++++|++++..|..+..+++|++|+|++|+
T Consensus 35 ~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 34555555542 222221 245555555555554444445555555555555555554444445555555555555555
Q ss_pred eeccCCchhhccccccEeecccccCCCCcc-ccccccccCcEEEecCc-eeccCCCccccCCCCcceeeccccccccccc
Q 001253 474 FTGSFPSDLCKLANLSTVELDQNQFSGPIP-TEIGNCNALQRLHLSDN-YFTGELPREVGNLSNLVTFNVSSNFLTGRIP 551 (1114)
Q Consensus 474 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 551 (1114)
+++..+..+..+++|++|++++|++++..+ ..+.++++|++|++++| .+++..+..|.++++|++|++++|++++..|
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 543333334445555555555555543222 24444555555555554 2443334444455555555555555544444
Q ss_pred ccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhc---C
Q 001253 552 LEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELG---S 628 (1114)
Q Consensus 552 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~---~ 628 (1114)
..+..+++|+.|++++|+++. +|. ..+..+++|+.|++++|++++..+..+. .
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~-~~~-----------------------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHIL-LLE-----------------------IFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTT-HHH-----------------------HHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred HHHhccccCCeecCCCCcccc-chh-----------------------hhhhhcccccEEECCCCccccccccccccccc
Confidence 444445555555555554432 222 2223344444455555544443332221 1
Q ss_pred cchhhHHhhcccccccc----cCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCCC
Q 001253 629 LSSLQIALNLSYNNLSG----LIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPS 697 (1114)
Q Consensus 629 l~~L~~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~ 697 (1114)
...++ .++|++|.+++ .+|..+..+++|++|||++|+|++..+..|.++++|+.|++++|++.|.+|.
T Consensus 248 ~~~l~-~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 248 NSLIK-KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCCCC-EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cchhh-ccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 22232 34455555444 3577888899999999999999954444468999999999999999999884
No 301
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.9e-30 Score=290.64 Aligned_cols=256 Identities=23% Similarity=0.198 Sum_probs=147.9
Q ss_pred cceEEeeccceeeccCCchhhccccccEeecccccCCCC--ccccccccccCcEEEecCceeccCCCccccCCCCcceee
Q 001253 463 SLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGP--IPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFN 540 (1114)
Q Consensus 463 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 540 (1114)
+|++|+|++|+++...+..|.++++|++|+|++|+++.. .|..+..+++|++|+|++|.++ .+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 344444444444422222334444444444444444411 1333444445555555555544 2344444555555555
Q ss_pred ccccccccccc-ccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCC-cccccccccccccccccCCCcC
Q 001253 541 VSSNFLTGRIP-LEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSG-SIPVQIGNLSRLTELQMGGNSF 618 (1114)
Q Consensus 541 Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l 618 (1114)
+++|++++..+ ..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 55555543222 244455555555555555555555555555666666666666654 4556666666666666666666
Q ss_pred CCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCcccccc-ccceEEeccCcccCCCCC
Q 001253 619 SGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLS-SLLGCNFSYNNLTGPIPS 697 (1114)
Q Consensus 619 ~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-~l~~l~ls~N~l~g~ip~ 697 (1114)
++..|..+..+++|+ .|+|++|++++..+..+..+++|++|||++|++++.+|..+..++ +|+.|++++|+++|.++.
T Consensus 188 ~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQ-VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CEECTTTTTTCTTCC-EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCcCHHHhcCCCCCC-EEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 665666666666666 567777777666666677778888888888888888888888884 888888888888887765
Q ss_pred cccccccccc---cccCCCCCCCCCC
Q 001253 698 SQTFQNMSVN---SFSGSKGLCGGPL 720 (1114)
Q Consensus 698 ~~~~~~~~~~---~~~~n~~lc~~p~ 720 (1114)
.+..+++... ....+...|..|.
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 267 QSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp HHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred HHHHHHHHhhhhhhccccccccCCch
Confidence 5444444322 2234455666554
No 302
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.6e-29 Score=280.22 Aligned_cols=249 Identities=23% Similarity=0.249 Sum_probs=176.1
Q ss_pred CEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCC--CCccccccCccceeeec
Q 001253 369 TKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGK--IPRHICRNTSLIFLNLE 446 (1114)
Q Consensus 369 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~~~~L~~L~Ls 446 (1114)
+.++.+++.++ .+|..+. ++|++|++++|++....+..|..+++|++|+|++|+++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 34555555555 3333221 4556666666666544444566666677777777766532 24555667777777777
Q ss_pred cCCccCCcCcccccCCcceEEeeccceeeccCC-chhhccccccEeecccccCCCCccccccccccCcEEEecCceecc-
Q 001253 447 TNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFP-SDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTG- 524 (1114)
Q Consensus 447 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~- 524 (1114)
+|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++++..|..+..+++|++|+|++|.+++
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 77777 456667777888888888888875544 567777888888888888877777777778888888888888875
Q ss_pred CCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccc
Q 001253 525 ELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGN 604 (1114)
Q Consensus 525 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 604 (1114)
..|..+..+++|++|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+++|++|+|++|++++..|..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 56777777888888888888887666777777778888888888887666667777778888888888887777777777
Q ss_pred cc-cccccccCCCcCCCC
Q 001253 605 LS-RLTELQMGGNSFSGG 621 (1114)
Q Consensus 605 l~-~L~~L~ls~N~l~~~ 621 (1114)
++ +|++|+|++|++++.
T Consensus 246 ~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCTTCCEEECTTCCEECS
T ss_pred hhccCCEEEccCCCeecc
Confidence 73 777788887777654
No 303
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.5e-31 Score=329.05 Aligned_cols=381 Identities=17% Similarity=0.110 Sum_probs=180.9
Q ss_pred CCCCCCccceeecccccc---CCCCccccc------------ccccccEEEecCCcccCccccccccc--cccchhhccc
Q 001253 217 EIGGCESLQYLGLAQNQL---SGEIPKEIG------------MLKYLTDVILWGNQLSGVIPKELGNC--TSLETLALYD 279 (1114)
Q Consensus 217 ~l~~l~~L~~L~Ls~N~l---~~~~p~~l~------------~l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~Ls~ 279 (1114)
.+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..++.. .+|++|+|++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 344566777777766432 123333332 45566666666666555444444442 2356666555
Q ss_pred ccccC--CchhhhcCCCccceeeecccccccccCccccccccccccccccccCCCCCchhhhcccccceeecccccccC-
Q 001253 280 NKQVG--QLPKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTG- 356 (1114)
Q Consensus 280 N~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~- 356 (1114)
|.... .++.....+++|++|+|++|.+.+..+.+ ++..+..+++|+.|++++|.+++
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~--------------------l~~~~~~~~~L~~L~L~~n~~~~~ 207 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW--------------------LHELAQHNTSLEVLNFYMTEFAKI 207 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH--------------------HHHHHHHCCCCCEEECTTCCCSSC
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH--------------------HHHHHhcCCCccEEEeeccCCCcc
Confidence 54110 11222234555555555555554331110 11222333444444444444431
Q ss_pred ---cccccccccccCCEEEcccccccccccCccccccceeeeeccCCccc---CCCCCCCCcCccceEEEeecccccCCC
Q 001253 357 ---VIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLV---GGIPQRLGAYSQLWVVDLSDNHLTGKI 430 (1114)
Q Consensus 357 ---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 430 (1114)
..+..+..+++|+.|+|++|.+.+ ++..+..+++|++|++++.... +..+..+..+++|+.|+++++.. +.+
T Consensus 208 ~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l 285 (592)
T 3ogk_B 208 SPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEM 285 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTG
T ss_pred CHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHH
Confidence 112223344555555555555443 3344444555555555432211 12233444555666666655422 244
Q ss_pred CccccccCccceeeeccCCccCCcC-cccccCCcceEEeeccceeeccCCchhhccccccEeecc-----------cccC
Q 001253 431 PRHICRNTSLIFLNLETNKLTGSIP-TGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELD-----------QNQF 498 (1114)
Q Consensus 431 ~~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~-----------~N~l 498 (1114)
|..+..+++|++|+|++|.+++... ..+..+++|++|+++++-..+.++..+..+++|++|+++ .|.+
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 5555555666666666666543222 224556666666666322222233333455666666666 2444
Q ss_pred CCC-ccccccccccCcEEEecCceeccCCCccccC-CCCcceeecc----ccccccc-----ccccccccccceEEECcc
Q 001253 499 SGP-IPTEIGNCNALQRLHLSDNYFTGELPREVGN-LSNLVTFNVS----SNFLTGR-----IPLEIFSCKMLQRLDLSW 567 (1114)
Q Consensus 499 ~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~L~~L~Ls~ 567 (1114)
++. ++..+..+++|++|+++.|++++..+..++. +++|+.|+++ .|.+++. ++..+..+++|+.|+|++
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 422 1222334566666666666665544444443 5566666664 4455432 222234455666666653
Q ss_pred c--cccCCCchhhhh-cccCCeeeccCccCCC-cccccccccccccccccCCCcCC
Q 001253 568 N--KFVGALPREIGS-LFQLELLKLSENELSG-SIPVQIGNLSRLTELQMGGNSFS 619 (1114)
Q Consensus 568 N--~l~~~~p~~~~~-l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~ 619 (1114)
| .+++..+..++. +++|++|+|++|++++ .++..+..+++|+.|++++|+|+
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 2 244443334433 4556666666655553 22333345555555555555554
No 304
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.5e-31 Score=327.10 Aligned_cols=394 Identities=14% Similarity=0.078 Sum_probs=263.8
Q ss_pred CCCccceeeccccccCCCCccccccc--ccccEEEecCCc-ccC-ccccccccccccchhhcccccccCC----chhhhc
Q 001253 220 GCESLQYLGLAQNQLSGEIPKEIGML--KYLTDVILWGNQ-LSG-VIPKELGNCTSLETLALYDNKQVGQ----LPKELG 291 (1114)
Q Consensus 220 ~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~N~-l~~-~~p~~l~~l~~L~~L~Ls~N~~~~~----~p~~~~ 291 (1114)
.+++|++|+|++|.+++..+..++.. ++|++|+|++|. ++. .++....++++|++|+|++|.+.+. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 45677777777777765555666553 347777777765 221 1222234667777778877776655 444455
Q ss_pred CCCccceeeecccccc----cccCccccccccccccccccccCCCCCchhhhcccccceeeccccccc---Ccccccccc
Q 001253 292 SIGSLKYLYIYRNELN----GTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLT---GVIPVELTT 364 (1114)
Q Consensus 292 ~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~---~~~~~~~~~ 364 (1114)
.+++|++|++++|.++ +.++..+..+++|++|++++|.+.+ ++..+..+++|+.|+++.+... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 6777888888877775 2344445667777777777777764 5667777778888887753322 223345667
Q ss_pred cccCCEEEcccccccccccCccccccceeeeeccCCcccCCCC-CCCCcCccceEEEeecccccC-CCCccccccCccce
Q 001253 365 LKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIP-QRLGAYSQLWVVDLSDNHLTG-KIPRHICRNTSLIF 442 (1114)
Q Consensus 365 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~L~~ 442 (1114)
+++|+.|+++++... .+|..+..+++|++|++++|.+.+... ..+..+++|++|+++ +.+.. .++..+..+++|++
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCE
T ss_pred cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCE
Confidence 778888888876433 566677788888888888888654333 335678888888888 44433 33444456788888
Q ss_pred eeec-----------cCCccCCc-CcccccCCcceEEeeccceeeccCCchhhc-cccccEeecc----cccCCCC----
Q 001253 443 LNLE-----------TNKLTGSI-PTGVTRCKSLVQLRLGGNSFTGSFPSDLCK-LANLSTVELD----QNQFSGP---- 501 (1114)
Q Consensus 443 L~Ls-----------~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~----~N~l~~~---- 501 (1114)
|+++ .|.+++.. +.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 8888 35666432 222445788999999888888777777765 8889999885 6778754
Q ss_pred -ccccccccccCcEEEecCc--eeccCCCcccc-CCCCcceeecccccccc-cccccccccccceEEECccccccCC-Cc
Q 001253 502 -IPTEIGNCNALQRLHLSDN--YFTGELPREVG-NLSNLVTFNVSSNFLTG-RIPLEIFSCKMLQRLDLSWNKFVGA-LP 575 (1114)
Q Consensus 502 -~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p 575 (1114)
++..+.++++|++|+|++| .+++..+..+. .+++|++|+|++|.+++ .++..+..+++|+.|+|++|.+++. ++
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 3444677888999999743 36655444444 37889999999998875 3444556788899999999988654 34
Q ss_pred hhhhhcccCCeeeccCccCCCcccccc-cccccccccccCCC
Q 001253 576 REIGSLFQLELLKLSENELSGSIPVQI-GNLSRLTELQMGGN 616 (1114)
Q Consensus 576 ~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~ls~N 616 (1114)
..+..+++|++|+|++|+++..-...+ ..++.+....+..+
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 445678889999999998885533222 24555554444433
No 305
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.4e-29 Score=293.66 Aligned_cols=258 Identities=21% Similarity=0.177 Sum_probs=190.3
Q ss_pred ceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCc
Q 001253 441 IFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDN 520 (1114)
Q Consensus 441 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 520 (1114)
..++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34555555555 3444433 45666666666666666666666667777777777766666666677777777777777
Q ss_pred eeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCC-chhhhhcccCCeeeccCccCCCccc
Q 001253 521 YFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGAL-PREIGSLFQLELLKLSENELSGSIP 599 (1114)
Q Consensus 521 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p 599 (1114)
+|++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|+..+.+ +..|..+++|++|+|++|+++ .+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 776555556777777777777777776444455666777777777774333333 346777778888888888877 445
Q ss_pred ccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCcccccc
Q 001253 600 VQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLS 679 (1114)
Q Consensus 600 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~ 679 (1114)
.+..+++|+.|+|++|+|++..|..|..+++|+ .|+|++|++++..|..|.++++|++|||++|+|++..+..|..++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ-KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCC-EEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCC-EEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 467788888888888888888888888888888 799999999999899999999999999999999999999999999
Q ss_pred ccceEEeccCcccCCCCCccccccc
Q 001253 680 SLLGCNFSYNNLTGPIPSSQTFQNM 704 (1114)
Q Consensus 680 ~l~~l~ls~N~l~g~ip~~~~~~~~ 704 (1114)
+|+.|+|++|+|.|.+...+...++
T Consensus 280 ~L~~L~L~~Np~~CdC~l~~l~~~~ 304 (440)
T 3zyj_A 280 HLERIHLHHNPWNCNCDILWLSWWI 304 (440)
T ss_dssp TCCEEECCSSCEECSSTTHHHHHHH
T ss_pred CCCEEEcCCCCccCCCCchHHHHHH
Confidence 9999999999999988765443333
No 306
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=4.2e-29 Score=295.72 Aligned_cols=257 Identities=23% Similarity=0.204 Sum_probs=190.4
Q ss_pred ceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCc
Q 001253 441 IFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDN 520 (1114)
Q Consensus 441 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 520 (1114)
..++.+++.++ .+|..+. +++++|+|++|++++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 34555555555 3444332 45666666666666666666666777777777777776666666777777777777777
Q ss_pred eeccCCCccccCCCCcceeecccccccccccccccccccceEEECccc-cccCCCchhhhhcccCCeeeccCccCCCccc
Q 001253 521 YFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWN-KFVGALPREIGSLFQLELLKLSENELSGSIP 599 (1114)
Q Consensus 521 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 599 (1114)
+|++..+..|.++++|++|+|++|++++..+..+..+++|+.|+|++| .+....+..|..+++|++|+|++|++++ +|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~ 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc
Confidence 777666666777777777777777776444445666777777777773 3333333457777888888888888874 34
Q ss_pred ccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCcccccc
Q 001253 600 VQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLS 679 (1114)
Q Consensus 600 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~ 679 (1114)
.+..+++|++|+|++|+|++..|..|..+++|+ .|+|++|++++..|..|..+++|+.|||++|+|++.++..|..++
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK-KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCC-EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred -cccccccccEEECcCCcCcccCcccccCccCCC-EEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 477788888888888888888888888888888 799999999999899999999999999999999998889999999
Q ss_pred ccceEEeccCcccCCCCCcccccc
Q 001253 680 SLLGCNFSYNNLTGPIPSSQTFQN 703 (1114)
Q Consensus 680 ~l~~l~ls~N~l~g~ip~~~~~~~ 703 (1114)
+|+.|++++|+|.|.+...+...+
T Consensus 291 ~L~~L~L~~Np~~CdC~~~~l~~~ 314 (452)
T 3zyi_A 291 YLVELHLHHNPWNCDCDILWLAWW 314 (452)
T ss_dssp TCCEEECCSSCEECSTTTHHHHHH
T ss_pred CCCEEEccCCCcCCCCCchHHHHH
Confidence 999999999999999886544333
No 307
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.4e-29 Score=281.46 Aligned_cols=233 Identities=23% Similarity=0.298 Sum_probs=167.7
Q ss_pred CccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEe
Q 001253 438 TSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHL 517 (1114)
Q Consensus 438 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 517 (1114)
++++.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|+++ .+|..++++++|++|+|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45666677766666 55666666666666666666666 56666666666666666666666 55666666666666666
Q ss_pred cCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCc
Q 001253 518 SDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGS 597 (1114)
Q Consensus 518 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 597 (1114)
++|++.+.+|..+... .++..+..+++|+.|+|++|+++ .+|..++.+++|++|+|++|++++
T Consensus 158 ~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 6665555555544320 01122334777778888888777 677777778888888888888874
Q ss_pred ccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCcccc
Q 001253 598 IPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVN 677 (1114)
Q Consensus 598 ~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~ 677 (1114)
+|..++.+++|++|+|++|++.+.+|..++.+++|+ .|+|++|++.+.+|..++++++|++|||++|++.|.+|.++.+
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~-~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK-RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC-EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC-EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 555677788888888888888888888888888887 6888888888888888888888889999999999999999999
Q ss_pred ccccceEEeccCcc
Q 001253 678 LSSLLGCNFSYNNL 691 (1114)
Q Consensus 678 l~~l~~l~ls~N~l 691 (1114)
+++|+.++++.|.+
T Consensus 300 L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 300 LPANCIILVPPHLQ 313 (328)
T ss_dssp SCTTCEEECCGGGS
T ss_pred ccCceEEeCCHHHH
Confidence 99999988887654
No 308
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.3e-29 Score=285.64 Aligned_cols=269 Identities=22% Similarity=0.204 Sum_probs=142.7
Q ss_pred eecccccccCcccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccc
Q 001253 347 LYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHL 426 (1114)
Q Consensus 347 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 426 (1114)
.++++|.++.+ |..+. ++|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..+++|++|+|++|++
T Consensus 36 c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 44555555532 32222 3566666666666655555566666666666666666655555666666666666666666
Q ss_pred cCCCCccccccCccceeeeccCCccCCcC-cccccCCcceEEeeccc-eeeccCCchhhccccccEeecccccCCCCccc
Q 001253 427 TGKIPRHICRNTSLIFLNLETNKLTGSIP-TGVTRCKSLVQLRLGGN-SFTGSFPSDLCKLANLSTVELDQNQFSGPIPT 504 (1114)
Q Consensus 427 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 504 (1114)
++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|++++..|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 64444445566666666666666663322 24556666666666666 34444455555666666666666666555555
Q ss_pred cccccccCcEEEecCceeccCCCccccCCCCcceeeccccccccccccccc---ccccceEEECccccccC----CCchh
Q 001253 505 EIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIF---SCKMLQRLDLSWNKFVG----ALPRE 577 (1114)
Q Consensus 505 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~ 577 (1114)
.+..+++|++|++++|+++...+..+..+++|+.|++++|.+++..+..+. ....++.++|++|.+++ .+|..
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~ 272 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL 272 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH
T ss_pred HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH
Confidence 566666666666666665432222333455555566665555543322221 13344445555544443 23444
Q ss_pred hhhcccCCeeeccCccCCCccccc-ccccccccccccCCCcCC
Q 001253 578 IGSLFQLELLKLSENELSGSIPVQ-IGNLSRLTELQMGGNSFS 619 (1114)
Q Consensus 578 ~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~ 619 (1114)
+..+++|++|++++|+++ .+|.. |.++++|++|+|++|++.
T Consensus 273 l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 455555555555555555 23322 344455555555555444
No 309
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=3.1e-30 Score=289.27 Aligned_cols=249 Identities=20% Similarity=0.214 Sum_probs=182.7
Q ss_pred ccccCccceeeeccCCccCCcCcccccCCcceEEeecccee-eccCCchhh-------ccccccEeecccccCCCCcccc
Q 001253 434 ICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSF-TGSFPSDLC-------KLANLSTVELDQNQFSGPIPTE 505 (1114)
Q Consensus 434 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~ 505 (1114)
++..++|++|++++|.+ .+|..+... |+.|+|++|.+ ...+|..+. ++++|++|+|++|++++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 44556677777777777 456555443 77777777777 345555554 5777788888888877777776
Q ss_pred c--cccccCcEEEecCceeccCCCccccCC-----CCcceeecccccccccccccccccccceEEECccccccCC--Cch
Q 001253 506 I--GNCNALQRLHLSDNYFTGELPREVGNL-----SNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGA--LPR 576 (1114)
Q Consensus 506 ~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~ 576 (1114)
+ ..+++|++|+|++|+|++. |..++.+ ++|++|+|++|++++..|..+..+++|+.|+|++|++.+. .|.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 7777888888888887765 6666666 7788888888888766667777778888888888877654 334
Q ss_pred hh--hhcccCCeeeccCccCCC--ccc-ccccccccccccccCCCcCCCCCC-hhhcCcchhhHHhhcccccccccCCcc
Q 001253 577 EI--GSLFQLELLKLSENELSG--SIP-VQIGNLSRLTELQMGGNSFSGGIP-AELGSLSSLQIALNLSYNNLSGLIPPE 650 (1114)
Q Consensus 577 ~~--~~l~~L~~L~L~~N~l~~--~~p-~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~~L~Ls~N~l~~~~p~~ 650 (1114)
.+ +.+++|++|+|++|++++ .++ ..+.++++|++|+|++|++++.+| ..+..+++|+ .|+|++|+|+ .+|..
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~-~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN-SLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCC-EEECTTSCCS-SCCSS
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCC-EEECCCCccC-hhhhh
Confidence 44 677788888888888773 122 334567788888888888887665 4556677887 6888888888 66777
Q ss_pred ccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccC
Q 001253 651 LGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTG 693 (1114)
Q Consensus 651 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g 693 (1114)
+. ++|++|||++|+|++. |. +..+++|+.|++++|++++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 76 7889999999999977 65 8889999999999998876
No 310
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.9e-28 Score=269.81 Aligned_cols=237 Identities=20% Similarity=0.192 Sum_probs=126.9
Q ss_pred CccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeeccccc-CCCCccccccccccCcEEE
Q 001253 438 TSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQ-FSGPIPTEIGNCNALQRLH 516 (1114)
Q Consensus 438 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~ 516 (1114)
++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|+ ++...|..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555554444445555555555555555554445555555555555555554 4444455555555555555
Q ss_pred ecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCC
Q 001253 517 LSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSG 596 (1114)
Q Consensus 517 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 596 (1114)
|++|++++..|..|.++++|++|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|++|++++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 55555555555555555555555555555553333334455555555555555554444445555555555555555555
Q ss_pred cccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccc
Q 001253 597 SIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFV 676 (1114)
Q Consensus 597 ~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~ 676 (1114)
..|..+.++++|+.|++++|++++..+..+..+++|+ .|+|++|.+++..+.. .-+..++.++.+.|.+.+..|+.+.
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ-YLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC-EEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC-EEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence 5555555555555555555555554444455555555 4555555555432211 2223455555666666666665543
No 311
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.6e-29 Score=282.53 Aligned_cols=251 Identities=21% Similarity=0.201 Sum_probs=125.7
Q ss_pred ceeecccccccCcccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecc
Q 001253 345 ELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDN 424 (1114)
Q Consensus 345 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 424 (1114)
+..+++.+.+.......+..+++|++|+|++|.+++..|..|..+++|++|++++|++.+..+
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----------------- 75 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----------------- 75 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-----------------
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-----------------
Confidence 334444444443333334444445555555555544444444444444444444444433222
Q ss_pred cccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccc
Q 001253 425 HLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPT 504 (1114)
Q Consensus 425 ~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 504 (1114)
+..+++|++|++++|++++.. ..++|++|++++|++++..+.. +++|++|++++|++++..+.
T Consensus 76 ---------~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~ 138 (317)
T 3o53_A 76 ---------LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDL 138 (317)
T ss_dssp ---------ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGB
T ss_pred ---------hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccch
Confidence 333344444444444443211 1244555555555554333222 34555566666666555555
Q ss_pred cccccccCcEEEecCceeccCCCcccc-CCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhccc
Q 001253 505 EIGNCNALQRLHLSDNYFTGELPREVG-NLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQ 583 (1114)
Q Consensus 505 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 583 (1114)
.+..+++|++|+|++|++++..+..+. .+++|++|+|++|.+++ ++.. ..+++|+.|+|++|++++ +|..+..+++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~-~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 215 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAG 215 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTT
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cccc-cccccCCEEECCCCcCCc-chhhhcccCc
Confidence 555666666666666666655444442 45666666666666653 2222 235666666666666663 3344666666
Q ss_pred CCeeeccCccCCCcccccccccccccccccCCCcCC-CCCChhhcCcchhh
Q 001253 584 LELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFS-GGIPAELGSLSSLQ 633 (1114)
Q Consensus 584 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~l~~L~ 633 (1114)
|++|+|++|+++ .+|..+..+++|+.|++++|++. +.+|..+..++.|+
T Consensus 216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred ccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 666666666666 35555666666666666666665 33444444443333
No 312
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=8.6e-28 Score=265.99 Aligned_cols=205 Identities=20% Similarity=0.137 Sum_probs=86.8
Q ss_pred ceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCC-ccCCcCcccccCCcceEEee
Q 001253 391 NLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNK-LTGSIPTGVTRCKSLVQLRL 469 (1114)
Q Consensus 391 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L 469 (1114)
+|++|++++|.+.+..+..|..+++|++|+|++|++++..|..|..+++|++|++++|+ ++...|..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 33344444444333333334444444444444444443334444444444444444443 33333344444444444444
Q ss_pred ccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeeccccccccc
Q 001253 470 GGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGR 549 (1114)
Q Consensus 470 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 549 (1114)
++|++++..|..+..+++|++|++++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 44444433344444444444444444444433333344444444444444444433333344444444444444444433
Q ss_pred ccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCC
Q 001253 550 IPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELS 595 (1114)
Q Consensus 550 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 595 (1114)
.|..+..+++|+.|+|++|++++..+..+..+++|++|++++|.+.
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 3444444444444444444444333333444444444444444333
No 313
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.7e-29 Score=282.34 Aligned_cols=265 Identities=19% Similarity=0.170 Sum_probs=165.6
Q ss_pred eeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccce
Q 001253 394 MLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNS 473 (1114)
Q Consensus 394 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 473 (1114)
.++++++.+.......+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+ +..+++|++|++++|+
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 33444444443333334455666777777777776666677777777777777777775443 7777777888888777
Q ss_pred eeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeeccccccccccccc
Q 001253 474 FTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLE 553 (1114)
Q Consensus 474 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 553 (1114)
+++.. ..++|++|++++|++++..+.. +++|++|++++|++++..+..+..+++|++|+|++|.+++..+..
T Consensus 92 l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 92 VQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHH
Confidence 77432 2367777777777777554433 456777777777777666666777777777777777776555555
Q ss_pred cc-ccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchh
Q 001253 554 IF-SCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSL 632 (1114)
Q Consensus 554 ~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 632 (1114)
+. .+++|+.|+|++|++++. |. ...+++|++|+|++|++++ +|..+..+++|+.|+|++|+|+ .+|..+..+++|
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred HhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCC
Confidence 53 466677777777776643 22 2235666666666666663 3444666666666666666666 355556666666
Q ss_pred hHHhhccccccc-ccCCccccchhhhHhhhcc-CcccccCCCC
Q 001253 633 QIALNLSYNNLS-GLIPPELGNLILLEYLLLN-NNHLSGEIPG 673 (1114)
Q Consensus 633 ~~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls-~N~l~g~ip~ 673 (1114)
+ .|+|++|.++ +.+|..++.+++|+.|+++ .+.++|..|.
T Consensus 240 ~-~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 240 E-HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp C-EEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred C-EEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 5 5666666666 5555556666666666666 3445554443
No 314
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.5e-28 Score=273.83 Aligned_cols=254 Identities=23% Similarity=0.197 Sum_probs=146.5
Q ss_pred ccccccccccccccccCCCCCchhhhcccccceeeccccccc-Cccccccc-------ccccCCEEEcccccccccccCc
Q 001253 314 IGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLT-GVIPVELT-------TLKNLTKLDLSINSLTGTIPLG 385 (1114)
Q Consensus 314 l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~~~~ 385 (1114)
++..++|+.|++++|.+ .+|..+... |+.|+|++|+++ ...+..+. .+++|++|+|++|++++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45566777777777777 566655544 777777777774 33444333 5667777777777777666655
Q ss_pred c--ccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCc
Q 001253 386 F--QYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKS 463 (1114)
Q Consensus 386 ~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~ 463 (1114)
+ ..+++|++|++++|++.+. |..++.+.. ...++|++|++++|++++..|..+..+++
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~-------------------~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQ-------------------WLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT-------------------TCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHH-------------------hhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 4 5555555555555555544 444443300 00044555555555555444445555555
Q ss_pred ceEEeeccceeecc--CCchh--hccccccEeecccccCCCC---ccccccccccCcEEEecCceeccCCC-ccccCCCC
Q 001253 464 LVQLRLGGNSFTGS--FPSDL--CKLANLSTVELDQNQFSGP---IPTEIGNCNALQRLHLSDNYFTGELP-REVGNLSN 535 (1114)
Q Consensus 464 L~~L~L~~N~l~~~--~p~~~--~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~ 535 (1114)
|++|+|++|++.+. .|..+ ..+++|++|+|++|+|++. ....+.++++|++|+|++|+|++..| ..+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 55555555554433 22222 5556666666666666521 11233455666666666666665553 34455666
Q ss_pred cceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCC
Q 001253 536 LVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSG 596 (1114)
Q Consensus 536 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 596 (1114)
|++|+|++|+|+ .+|..+. ++|+.|||++|++++. |. +..+++|++|+|++|.+++
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 777777777776 5666555 6677777777777654 44 6677777777777777664
No 315
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.3e-27 Score=287.29 Aligned_cols=266 Identities=28% Similarity=0.355 Sum_probs=120.2
Q ss_pred CCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeecc
Q 001253 368 LTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLET 447 (1114)
Q Consensus 368 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~ 447 (1114)
++.|++++|.++ .+|..+. ++|++|++++|+++. +|. .+++|++|+|++|+|++ +|. .+++|++|++++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECS
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcC
Confidence 444444444444 2333222 344444444444432 222 23445555555555542 222 334455555555
Q ss_pred CCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCC
Q 001253 448 NKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELP 527 (1114)
Q Consensus 448 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 527 (1114)
|++++ +|. .+++|+.|++++|++++ +|.. +++|++|+|++|++++ +|. .+++|+.|++++|+|++ +|
T Consensus 111 N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 111 NPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp CCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred CcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc
Confidence 55543 222 33445555555555542 3322 2455555555555552 222 12445555555555553 33
Q ss_pred ccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCccccccccccc
Q 001253 528 REVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSR 607 (1114)
Q Consensus 528 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 607 (1114)
..+++|+.|++++|.++ .+|.. +++|+.|++++|.++ .+|.. +++|+.|+|++|+|++ +| ..+++
T Consensus 178 ---~~~~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~ 242 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSE 242 (622)
T ss_dssp ---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred ---ccCCCCcEEECCCCCCC-CCCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCc
Confidence 23345555555555555 23322 244555555555555 23321 2445555555555553 33 23345
Q ss_pred ccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccccc
Q 001253 608 LTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNL 678 (1114)
Q Consensus 608 L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l 678 (1114)
|+.|+|++|+|+ .+|. .+++|+ .|+|++|+|+ .+|..+.++++|+.|+|++|+|+|.+|..+..+
T Consensus 243 L~~L~Ls~N~L~-~lp~---~~~~L~-~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 243 LKELMVSGNRLT-SLPM---LPSGLL-SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCEEECCSSCCS-CCCC---CCTTCC-EEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CcEEECCCCCCC-cCCc---ccccCc-EEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 555555555555 2333 233333 3445555544 334445555555555555555555555444443
No 316
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=6.1e-27 Score=277.11 Aligned_cols=227 Identities=19% Similarity=0.148 Sum_probs=125.4
Q ss_pred ceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeec
Q 001253 391 NLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLG 470 (1114)
Q Consensus 391 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 470 (1114)
++++|+|++|++.+..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..+..+++|++|+|+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 34444444444444444444445555555555555554444455555555555555555554444445555555555555
Q ss_pred cceeeccCCchhhccccccEeeccc-ccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeeccccccccc
Q 001253 471 GNSFTGSFPSDLCKLANLSTVELDQ-NQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGR 549 (1114)
Q Consensus 471 ~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 549 (1114)
+|++++..+..|..+++|++|++++ |.+....+..|.++++|++|+|++|+|++ +| .+..+++|+.|+|++|++++.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCccc
Confidence 5555544444555556666666655 33333333345566666666666666653 22 355555666666666666655
Q ss_pred ccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCC
Q 001253 550 IPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFS 619 (1114)
Q Consensus 550 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 619 (1114)
.|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++.
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 5555555666666666666666555556666666666666666666555555566666666666666654
No 317
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=6.5e-27 Score=275.90 Aligned_cols=246 Identities=20% Similarity=0.190 Sum_probs=137.8
Q ss_pred CEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccC
Q 001253 369 TKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETN 448 (1114)
Q Consensus 369 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N 448 (1114)
..++.+++.++ .+|..+. ++++.|+|++|++.+..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34444444444 2333222 34444555555554444455555555555555555555555555555555666666666
Q ss_pred CccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeeccc-ccCCCCccccccccccCcEEEecCceeccCCC
Q 001253 449 KLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQ-NQFSGPIPTEIGNCNALQRLHLSDNYFTGELP 527 (1114)
Q Consensus 449 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 527 (1114)
++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++ |.+....+..|.++++|++|+|++|+|+ .+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 65544444555666666666666666555555566666666666665 3333333335566666666666666665 233
Q ss_pred ccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCccccccccccc
Q 001253 528 REVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSR 607 (1114)
Q Consensus 528 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 607 (1114)
.+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 2555566666666666666555555555666666666666666555555666666666666666666555555566666
Q ss_pred ccccccCCCcCC
Q 001253 608 LTELQMGGNSFS 619 (1114)
Q Consensus 608 L~~L~ls~N~l~ 619 (1114)
|+.|+|++|++.
T Consensus 281 L~~L~L~~Np~~ 292 (440)
T 3zyj_A 281 LERIHLHHNPWN 292 (440)
T ss_dssp CCEEECCSSCEE
T ss_pred CCEEEcCCCCcc
Confidence 666666666654
No 318
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.1e-28 Score=291.18 Aligned_cols=236 Identities=22% Similarity=0.158 Sum_probs=109.5
Q ss_pred CccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEee
Q 001253 413 YSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVE 492 (1114)
Q Consensus 413 l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 492 (1114)
+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.|++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3455555555555555555555555555555555555554333 4555555555555555543221 14444444
Q ss_pred cccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccC
Q 001253 493 LDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVG 572 (1114)
Q Consensus 493 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 572 (1114)
+++|.|++..+. .+++|+.|+|++|.|++.. |..+..+++|+.|+|++|.+++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~------------------------~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLR------------------------DLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGG------------------------GBCGGGGSSEEEEECTTSCCCE
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCC------------------------chhhcCCCCCCEEECCCCCCCC
Confidence 444444433322 1233444444444444433 4444444444444444444444
Q ss_pred CCchhhh-hcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccc
Q 001253 573 ALPREIG-SLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPEL 651 (1114)
Q Consensus 573 ~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~ 651 (1114)
.+|..+. .+++|++|+|++|.+++..+ +..+++|+.|+|++|+|++ +|+.+..+++|+ .|+|++|+|++ +|..+
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~-~L~Ls~N~l~~-lp~~l 233 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVT-WISLRNNKLVL-IEKAL 233 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCS-EEECTTSCCCE-ECTTC
T ss_pred cChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCcc-EEEecCCcCcc-cchhh
Confidence 4444443 34444444444444443311 1234444444444444443 222244444444 34444444443 24444
Q ss_pred cchhhhHhhhccCcccc-cCCCCccccccccceEEec
Q 001253 652 GNLILLEYLLLNNNHLS-GEIPGSFVNLSSLLGCNFS 687 (1114)
Q Consensus 652 ~~l~~L~~L~Ls~N~l~-g~ip~~~~~l~~l~~l~ls 687 (1114)
+.+++|+.|+|++|+++ +.+|..+..++.|+.++++
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 44455555555555554 4444445555555444443
No 319
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.7e-26 Score=279.74 Aligned_cols=268 Identities=29% Similarity=0.326 Sum_probs=185.2
Q ss_pred ccceeecccccccCcccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEee
Q 001253 343 GLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLS 422 (1114)
Q Consensus 343 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 422 (1114)
+++.|++++|.++ .+|..+. ++|++|+|++|.|+. +|. .+++|++|+|++|++++ +|. .+++|++|+|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 4556666666665 3343333 566666666666663 333 35666666776666653 333 45677777777
Q ss_pred cccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCc
Q 001253 423 DNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPI 502 (1114)
Q Consensus 423 ~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 502 (1114)
+|++++. |. .+++|+.|++++|++++ +|.. +++|++|+|++|++++ +|. .+.+|+.|++++|+|++ +
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence 7777643 33 44677777777777774 4443 3777788888887774 443 24567888888888874 4
Q ss_pred cccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcc
Q 001253 503 PTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLF 582 (1114)
Q Consensus 503 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 582 (1114)
| ..+++|+.|+|++|+|++ +|.. +++|+.|++++|.++ .+|.. +++|+.|+|++|+|++ +| ..++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCT
T ss_pred c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCC
Confidence 4 446778888888888874 4432 467888888888887 55543 4778888888888885 55 4557
Q ss_pred cCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchh
Q 001253 583 QLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLI 655 (1114)
Q Consensus 583 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~ 655 (1114)
+|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+ .|+|++|.+++.+|..+..++
T Consensus 242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~-~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSET-TVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTC-EEECCSCCCCHHHHHHHHHHH
T ss_pred cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccC-EEEecCCCCCCcCHHHHHhcc
Confidence 8888888888888 4555 5678888888888888 7788888888888 688888888888777665544
No 320
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-27 Score=282.88 Aligned_cols=238 Identities=21% Similarity=0.179 Sum_probs=200.0
Q ss_pred ccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccC
Q 001253 382 IPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRC 461 (1114)
Q Consensus 382 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l 461 (1114)
+......+++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.|++.. ..
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~ 98 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VG 98 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----EC
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CC
Confidence 33344556699999999999999999999999999999999999997766 889999999999999999543 33
Q ss_pred CcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCcccc-CCCCcceee
Q 001253 462 KSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVG-NLSNLVTFN 540 (1114)
Q Consensus 462 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~ 540 (1114)
++|++|++++|.+++..+. .+++|+.|+|++|+|++..|..++.+++|+.|+|++|.|++..|..+. .+++|+.|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 8999999999999976654 357899999999999999999999999999999999999998888886 799999999
Q ss_pred cccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCC-
Q 001253 541 VSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFS- 619 (1114)
Q Consensus 541 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~- 619 (1114)
|++|.+++. |. ...+++|+.|+|++|++++ +|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++.
T Consensus 176 Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 176 LQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp CTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred cCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 999999955 33 3358899999999999986 44558888999999999999984 6777888888888888888886
Q ss_pred CCCChhhcCcchhh
Q 001253 620 GGIPAELGSLSSLQ 633 (1114)
Q Consensus 620 ~~~p~~~~~l~~L~ 633 (1114)
+.+|..+..++.|.
T Consensus 252 ~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 252 GTLRDFFSKNQRVQ 265 (487)
T ss_dssp HHHHHHHTTCHHHH
T ss_pred cchHHHHHhCCCCc
Confidence 44444444444443
No 321
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.94 E-value=1.4e-27 Score=287.69 Aligned_cols=188 Identities=16% Similarity=0.086 Sum_probs=133.3
Q ss_pred eecccCCeEEEEEEeC-CCcEEEEEEecccCCC-------ChhhHHHHHHHHHHHhcC-CCCceeeEEeEEEecCceEEE
Q 001253 816 VIGRGACGTVYRAVLR-TGHTVAVKKLASNREG-------NNNVDNSFRAEILTLGKI-RHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 816 ~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~~-------~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 886 (1114)
..+.|++|.+..++.. .|+.||+|++...... .+...++|.+|+++++++ .|+||+++++++++++..|||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 3567777777776633 6899999999765322 123345689999999999 799999999999999999999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||++|++|.+++... ..++.. .|+.||++||+|+|++ |||||||||+|||+++++.+||+|||+|+.....
T Consensus 321 MEyv~G~~L~d~i~~~-~~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~- 392 (569)
T 4azs_A 321 MEKLPGRLLSDMLAAG-EEIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD- 392 (569)
T ss_dssp EECCCSEEHHHHHHTT-CCCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC---
T ss_pred EecCCCCcHHHHHHhC-CCCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCCC-
Confidence 9999999999999844 456654 4789999999999999 9999999999999999999999999999876432
Q ss_pred CCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCC
Q 001253 967 SKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAP 1012 (1114)
Q Consensus 967 ~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p 1012 (1114)
.....+.+||+.|||||++.+. +..++|+|++|++++++.++..+
T Consensus 393 ~~~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~~~ 437 (569)
T 4azs_A 393 CSWPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPWSN 437 (569)
T ss_dssp -CCSHHHHHHHHHHHHHHC------------------CCCCTTHHH
T ss_pred CccccCceechhhccHHHhCCC-CCCcccccccccchhhhccccch
Confidence 2334567899999999998764 67789999999998887665433
No 322
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5.3e-26 Score=250.34 Aligned_cols=234 Identities=21% Similarity=0.215 Sum_probs=153.6
Q ss_pred eeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCcee
Q 001253 443 LNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYF 522 (1114)
Q Consensus 443 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 522 (1114)
.+..+..++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|++++..+..|.++++|++|+|++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 334444444 3444332 3566666666666655555666666666666666666655555666666677777777766
Q ss_pred ccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCC-CchhhhhcccCCeeeccCccCCCccccc
Q 001253 523 TGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGA-LPREIGSLFQLELLKLSENELSGSIPVQ 601 (1114)
Q Consensus 523 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 601 (1114)
++..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|++++. +|..+..+++|++|++++|++++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 666666666666666666666666654444566666666666666666642 4666666666666666666666555555
Q ss_pred ccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCcccccccc
Q 001253 602 IGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSL 681 (1114)
Q Consensus 602 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l 681 (1114)
+..+++|+.+++ .|++++|++++..+..+.. .+|+.|+|++|+|++.++..|..+++|
T Consensus 169 ~~~l~~L~~l~l---------------------~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 169 LRVLHQMPLLNL---------------------SLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp GHHHHTCTTCCE---------------------EEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred hhhhhhccccce---------------------eeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccc
Confidence 555555442221 3667777777665554444 379999999999998888888999999
Q ss_pred ceEEeccCcccCCCCCcccc
Q 001253 682 LGCNFSYNNLTGPIPSSQTF 701 (1114)
Q Consensus 682 ~~l~ls~N~l~g~ip~~~~~ 701 (1114)
+.|++++|++.|.+|.-..+
T Consensus 227 ~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 227 QKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp CEEECCSSCBCCCTTTTHHH
T ss_pred cEEEccCCcccccCCchHHH
Confidence 99999999999999854333
No 323
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=2.4e-25 Score=243.96 Aligned_cols=217 Identities=25% Similarity=0.297 Sum_probs=128.7
Q ss_pred CCCccceEEEecCCCccEEEEEeecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCCCCCCEEEccCCCcccc
Q 001253 62 TPCGWIGVNCTTNDFGAVVFSLNLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAH 141 (1114)
Q Consensus 62 ~~C~w~gv~C~~~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 141 (1114)
++|.|.|+.|+... .++.+++++++++. +|..+. ++++.|+|++|++++..+..|+.+++|++|+|++|.++..
T Consensus 3 ~~C~~~~~~C~c~~---~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i 76 (270)
T 2o6q_A 3 ALCKKDGGVCSCNN---NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76 (270)
T ss_dssp CCBGGGTCSBEEET---TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC
T ss_pred ccCCCCCCCCEeCC---CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee
Confidence 47999999997642 12345666666663 444433 4566666666666655555666666666666666666654
Q ss_pred cccccccccccceeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccceeccccccccccCCCCCCC
Q 001253 142 IPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQNLISGSLPSEIGGC 221 (1114)
Q Consensus 142 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 221 (1114)
.+..|.++++|++|+|++|++++..+..|.++++ |++|++++|.+++..+..|..+
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------------------------L~~L~l~~n~l~~~~~~~~~~l 132 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN------------------------LAELRLDRNQLKSLPPRVFDSL 132 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSS------------------------CCEEECCSSCCCCCCTTTTTTC
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccC------------------------CCEEECCCCccCeeCHHHhCcC
Confidence 4444566666666666666665444444444444 4555555555554444455555
Q ss_pred CccceeeccccccCCCCcccccccccccEEEecCCcccCccccccccccccchhhcccccccCCchhhhcCCCccceeee
Q 001253 222 ESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQVGQLPKELGSIGSLKYLYI 301 (1114)
Q Consensus 222 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L 301 (1114)
++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..|.++++|++|++++|.+.+..+..|..+++|++|+|
T Consensus 133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 55555566666555444444555666666666666666554555666666666666666665555555666677777777
Q ss_pred ccccccc
Q 001253 302 YRNELNG 308 (1114)
Q Consensus 302 ~~n~l~~ 308 (1114)
++|.+..
T Consensus 213 ~~N~~~c 219 (270)
T 2o6q_A 213 QENPWDC 219 (270)
T ss_dssp CSSCBCC
T ss_pred cCCCeeC
Confidence 7776653
No 324
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=2.5e-28 Score=300.54 Aligned_cols=134 Identities=19% Similarity=0.208 Sum_probs=77.9
Q ss_pred cccccEeecccccCCCCcccccc-ccccCcEEEec--C----ceeccC-----CCccccCCCCcceeecccccccccccc
Q 001253 485 LANLSTVELDQNQFSGPIPTEIG-NCNALQRLHLS--D----NYFTGE-----LPREVGNLSNLVTFNVSSNFLTGRIPL 552 (1114)
Q Consensus 485 l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 552 (1114)
+++|+.|.++.|++++..+..+. .+++|+.|+|+ + |.+++. ++..+..+++|+.|+|++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 55666666666666544444443 35666666666 3 344421 111244566677777765 55544444
Q ss_pred cccc-cccceEEECccccccCCCchhh-hhcccCCeeeccCccCCCcccc-cccccccccccccCCCcCC
Q 001253 553 EIFS-CKMLQRLDLSWNKFVGALPREI-GSLFQLELLKLSENELSGSIPV-QIGNLSRLTELQMGGNSFS 619 (1114)
Q Consensus 553 ~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~ 619 (1114)
.+.. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++.... .+..+++|+.|++++|+++
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 4444 6677777777777765544444 5567777777777777543332 3345677777777777764
No 325
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.3e-28 Score=303.01 Aligned_cols=170 Identities=16% Similarity=0.072 Sum_probs=82.1
Q ss_pred eeeccccccCCCCcccccccccccEEEecCCcccC---cccc------------ccccccccchhhcccccccCCchhhh
Q 001253 226 YLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSG---VIPK------------ELGNCTSLETLALYDNKQVGQLPKEL 290 (1114)
Q Consensus 226 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~---~~p~------------~l~~l~~L~~L~Ls~N~~~~~~p~~~ 290 (1114)
.++++..... .....+..+++|++|+++++.... ..|. ....+++|++|+|++|.+.+..+..+
T Consensus 47 ~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l 125 (594)
T 2p1m_B 47 KVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125 (594)
T ss_dssp EEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred EEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence 4555444322 233445677889999998875321 1111 12345566666666666555555555
Q ss_pred c-CCCccceeeeccc-ccccc-cCccccccccccccccccccCCCCCchhhh----cccccceeeccccc--ccCc-ccc
Q 001253 291 G-SIGSLKYLYIYRN-ELNGT-IPREIGKLSSALEIDFSENSLIGEIPVELS----KILGLELLYLFENK--LTGV-IPV 360 (1114)
Q Consensus 291 ~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~----~l~~L~~L~L~~N~--l~~~-~~~ 360 (1114)
. .+++|++|+|++| .++.. ++..+..+++|++|++++|.+++..+..+. .+++|+.|++++|. ++.. .+.
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 4 4566666666666 33321 233333555566666665555544333332 33355555555554 1100 011
Q ss_pred cccccccCCEEEcccc-cccccccCccccccceeeeec
Q 001253 361 ELTTLKNLTKLDLSIN-SLTGTIPLGFQYLTNLIMLQL 397 (1114)
Q Consensus 361 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 397 (1114)
.+..+++|++|+|++| .+.+ ++..+..+++|++|++
T Consensus 206 l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGT 242 (594)
T ss_dssp HHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEEC
T ss_pred HHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEccc
Confidence 1122355555555555 2222 3444444445555543
No 326
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=3.6e-25 Score=242.78 Aligned_cols=228 Identities=21% Similarity=0.174 Sum_probs=145.9
Q ss_pred ccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEec
Q 001253 439 SLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLS 518 (1114)
Q Consensus 439 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 518 (1114)
.+..+++..+.+.+. .....+++|+.|++++|.++. + ..+..+++|++|++++|++++. ..+..+++|++|+|+
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 344445555555432 224455666666666666652 2 2356666666666666666642 356666667777777
Q ss_pred CceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcc
Q 001253 519 DNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSI 598 (1114)
Q Consensus 519 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 598 (1114)
+|++++..+..|.++++|++|+|++|++++..+..+..+++|+.|+|++|++++..+..++.+++|++|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 77666666666666666777777777666544445566667777777777766555555666677777777777777665
Q ss_pred cccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccccc
Q 001253 599 PVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNL 678 (1114)
Q Consensus 599 p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l 678 (1114)
+..++.+++|+.|++++|++++..|..+..+++|+ .|+|++|.+++..| +|++|+++.|+++|.+|.+++.+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ-YIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC-EEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTSCB
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC-EEEccCCCccccCc-------HHHHHHHHHHhCCCcccCccccc
Confidence 55666677777777777777766666666677776 57777776665433 57777788888888888776655
Q ss_pred cc
Q 001253 679 SS 680 (1114)
Q Consensus 679 ~~ 680 (1114)
..
T Consensus 246 ~~ 247 (272)
T 3rfs_A 246 AP 247 (272)
T ss_dssp CG
T ss_pred CC
Confidence 43
No 327
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=4.4e-25 Score=242.09 Aligned_cols=209 Identities=22% Similarity=0.246 Sum_probs=148.9
Q ss_pred ccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEE
Q 001253 436 RNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRL 515 (1114)
Q Consensus 436 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 515 (1114)
.+++|+.|++++|.++. + ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..+..|.++++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 34555555555555552 2 2355666666666666666642 356677777777777777776666667777777777
Q ss_pred EecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCC
Q 001253 516 HLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELS 595 (1114)
Q Consensus 516 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 595 (1114)
+|++|++++..+..|+.+++|++|++++|++++..+..+..+++|+.|++++|++++..+..++.+++|++|++++|+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 77777777666666777777777777777777555555667777888888888887666666777888888888888888
Q ss_pred CcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhh
Q 001253 596 GSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLIL 656 (1114)
Q Consensus 596 ~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~ 656 (1114)
+..|..+..+++|+.|++++|++.+..| .|+ .|+++.|+++|.+|..++.+..
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~-~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIR-YLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTH-HHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCHHHHhCCcCCCEEEccCCCccccCc-------HHH-HHHHHHHhCCCcccCcccccCC
Confidence 7777777888888888888888876544 455 5778888888888888877654
No 328
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.6e-24 Score=238.38 Aligned_cols=206 Identities=24% Similarity=0.195 Sum_probs=135.2
Q ss_pred CccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEe
Q 001253 438 TSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHL 517 (1114)
Q Consensus 438 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 517 (1114)
++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666666555556666666777777777666655666677777777777777777666666777777777777
Q ss_pred cCceeccCCCccccCCCCcceeeccccccccc-ccccccccccceEEECccccccCCCchhhhhcccCC----eeeccCc
Q 001253 518 SDNYFTGELPREVGNLSNLVTFNVSSNFLTGR-IPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLE----LLKLSEN 592 (1114)
Q Consensus 518 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~L~~N 592 (1114)
++|++++..+..+..+++|++|++++|.+++. +|..+..+++|+.|+|++|++++..+..+..+.+|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 77777766665677777777777777777642 567777777777777877777766667777777766 6777777
Q ss_pred cCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccc
Q 001253 593 ELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSG 645 (1114)
Q Consensus 593 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~ 645 (1114)
.+++..+..+. ..+|+.|+|++|++++..+..+..+++|+ .|+|++|.+++
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQ-KIWLHTNPWDC 238 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCC-EEECCSSCBCC
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhccccccc-EEEccCCcccc
Confidence 77754444333 33566666666666644444445555554 45555555443
No 329
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=7.3e-25 Score=242.20 Aligned_cols=207 Identities=27% Similarity=0.284 Sum_probs=145.4
Q ss_pred hccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceE
Q 001253 483 CKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQR 562 (1114)
Q Consensus 483 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 562 (1114)
.++++++++++++|+++ .+|..+. ++++.|+|++|+|++..+..|.++++|++|+|++|.+++ ++.. ..+++|+.
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCE
Confidence 34455555555555555 3343332 456666666666665555666666666666666666663 3322 45666777
Q ss_pred EECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhccccc
Q 001253 563 LDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNN 642 (1114)
Q Consensus 563 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~ 642 (1114)
|+|++|+++ .+|..+..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|+ .|+|++|+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~ 159 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE-KLSLANNN 159 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC-EEECTTSC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC-EEECCCCc
Confidence 777777776 5666667777777777777777766666777777777777777777766666677777777 67888888
Q ss_pred ccccCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCCC
Q 001253 643 LSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPS 697 (1114)
Q Consensus 643 l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~ 697 (1114)
|++..+..|..+++|+.|+|++|+|+ .+|..+....+|+.+++++|+|.|.+..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 88766667788888999999999998 6778888888999999999999987643
No 330
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.7e-24 Score=237.20 Aligned_cols=206 Identities=23% Similarity=0.249 Sum_probs=140.4
Q ss_pred ccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECcc
Q 001253 488 LSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSW 567 (1114)
Q Consensus 488 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 567 (1114)
.+++++++|+++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|.++...+..+..+++|++|+|++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 445555555555 3343332 3455666666666554445556666666666666666532222334566666666666
Q ss_pred ccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccC
Q 001253 568 NKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLI 647 (1114)
Q Consensus 568 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~ 647 (1114)
|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+ .|+|++|++++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK-ELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc-eeEecCCcCcEeC
Confidence 666655555566666677777777777666666667777777777777777765555677777777 6777777777776
Q ss_pred CccccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCCC
Q 001253 648 PPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPS 697 (1114)
Q Consensus 648 p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~ 697 (1114)
+..|.++++|++|+|++|+|++..+..|..+++|+.|++++|+|.|.++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 77788888999999999999988888899999999999999999998873
No 331
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.91 E-value=8.4e-25 Score=262.02 Aligned_cols=188 Identities=19% Similarity=0.233 Sum_probs=149.6
Q ss_pred cCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChh-----hHHHHHHHHHHHhcCCCCceeeEEeEEEecCceEEE
Q 001253 812 DERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNN-----VDNSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLM 886 (1114)
Q Consensus 812 ~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 886 (1114)
...++||+|+||+||+|+.. ++.+|+|+.......... ..+.+.+|++++++++||||+++..++...+..|+|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSYL-DFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEECS-SCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEEC-CCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 44568999999999999554 789999987664433221 234578999999999999999776777778888999
Q ss_pred EecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCC
Q 001253 887 YEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQ 966 (1114)
Q Consensus 887 ~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~ 966 (1114)
|||+++++|.++++. +..++.|+++||+|||++ +|+||||||+|||++. .+||+|||+|+......
T Consensus 418 mE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~ 483 (540)
T 3en9_A 418 MSYINGKLAKDVIED---------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDE 483 (540)
T ss_dssp EECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCCHH
T ss_pred EECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCCcc
Confidence 999999999999984 568999999999999999 9999999999999999 99999999999865322
Q ss_pred CCc------cccccccccccCcccccc--CCCCcccchHHHHHHHHHHHhCCCCCC
Q 001253 967 SKS------MSAIAGSYGYIAPEYAYT--MKVTEKCDIYSYGVVLLELLTGRAPVQ 1014 (1114)
Q Consensus 967 ~~~------~~~~~g~~~y~aPE~~~~--~~~~~~~DvwslGvil~el~tg~~p~~ 1014 (1114)
... .....||+.|||||++.. ..|+..+|+|+..+-..+-+.++.+|.
T Consensus 484 ~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 484 DKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred ccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 111 235689999999999986 668888999999999888888877764
No 332
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.1e-25 Score=257.87 Aligned_cols=260 Identities=18% Similarity=0.204 Sum_probs=140.0
Q ss_pred eecccccccCcccccccccccCCEEEccccccccccc----Ccccccc-ceeeeeccCCcccCCCCCCCCcCccceEEEe
Q 001253 347 LYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIP----LGFQYLT-NLIMLQLFDNSLVGGIPQRLGAYSQLWVVDL 421 (1114)
Q Consensus 347 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 421 (1114)
+.+++|.+++.+|..+...++|++|||++|.+++..+ ..|..++ +|++|+|++|.+.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------- 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-------- 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence 4566666666666655555557777777777665544 4444444 45555555555544433333332
Q ss_pred ecccccCCCCccccc-cCccceeeeccCCccCCcCccccc----C-CcceEEeeccceeeccCCchhhc-----cccccE
Q 001253 422 SDNHLTGKIPRHICR-NTSLIFLNLETNKLTGSIPTGVTR----C-KSLVQLRLGGNSFTGSFPSDLCK-----LANLST 490 (1114)
Q Consensus 422 s~N~l~~~~~~~~~~-~~~L~~L~Ls~N~l~~~~p~~~~~----l-~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~ 490 (1114)
+.. .++|++|+|++|++++..+..+.. + ++|++|+|++|++++..+..+.. .++|++
T Consensus 75 ------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 75 ------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp ------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred ------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 000 044445555555544433332222 2 45555555555555444333332 135666
Q ss_pred eecccccCCCCcc----ccccccc-cCcEEEecCceeccCCCcccc----CC-CCcceeeccccccccc----ccccccc
Q 001253 491 VELDQNQFSGPIP----TEIGNCN-ALQRLHLSDNYFTGELPREVG----NL-SNLVTFNVSSNFLTGR----IPLEIFS 556 (1114)
Q Consensus 491 L~L~~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~----~p~~~~~ 556 (1114)
|+|++|++++..+ ..+..++ +|++|+|++|+|++..+..+. .. ++|++|+|++|.+++. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 6666666653322 2233333 666666666666655444333 23 4666666666666642 3444444
Q ss_pred -cccceEEECccccccCCCchh----hhhcccCCeeeccCccCCCc-------ccccccccccccccccCCCcCCCCCCh
Q 001253 557 -CKMLQRLDLSWNKFVGALPRE----IGSLFQLELLKLSENELSGS-------IPVQIGNLSRLTELQMGGNSFSGGIPA 624 (1114)
Q Consensus 557 -l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~-------~p~~~~~l~~L~~L~ls~N~l~~~~p~ 624 (1114)
.++|+.|+|++|++++..+.. +..+++|++|+|++|.+.+. ++..+.++++|+.||+++|++.+..+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 346777777777776554433 34456777777777774432 233566777788888888887755444
Q ss_pred hh
Q 001253 625 EL 626 (1114)
Q Consensus 625 ~~ 626 (1114)
.+
T Consensus 303 ~~ 304 (362)
T 3goz_A 303 PI 304 (362)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 333
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=2e-25 Score=255.88 Aligned_cols=225 Identities=20% Similarity=0.184 Sum_probs=129.7
Q ss_pred eeccCCcccCCCCCCCCcCccceEEEeecccccCCCC----ccccccC-ccceeeeccCCccCCcCcccccC-----Ccc
Q 001253 395 LQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIP----RHICRNT-SLIFLNLETNKLTGSIPTGVTRC-----KSL 464 (1114)
Q Consensus 395 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~~~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L 464 (1114)
+.++.|.+++.+|..+...++|++|||++|.+++..+ ..+..++ +|++|+|++|++++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566677776666666555667777777777765555 5555565 67777777777666555555554 666
Q ss_pred eEEeeccceeeccCCchhhcc-----ccccEeecccccCCCCccccccc-----cccCcEEEecCceeccCCC----ccc
Q 001253 465 VQLRLGGNSFTGSFPSDLCKL-----ANLSTVELDQNQFSGPIPTEIGN-----CNALQRLHLSDNYFTGELP----REV 530 (1114)
Q Consensus 465 ~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~~p----~~~ 530 (1114)
++|+|++|++++..+..++.. ++|++|+|++|+|++..+..+.. .++|++|+|++|+|++..+ ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 667776666665555544433 56666666666666554444332 2466666666666664322 223
Q ss_pred cCCC-Ccceeecccccccccccccccc----c-ccceEEECccccccCC----Cchhhhhc-ccCCeeeccCccCCCccc
Q 001253 531 GNLS-NLVTFNVSSNFLTGRIPLEIFS----C-KMLQRLDLSWNKFVGA----LPREIGSL-FQLELLKLSENELSGSIP 599 (1114)
Q Consensus 531 ~~l~-~L~~L~Ls~N~l~~~~p~~~~~----l-~~L~~L~Ls~N~l~~~----~p~~~~~l-~~L~~L~L~~N~l~~~~p 599 (1114)
..++ +|++|+|++|++++..+..+.. + ++|+.|||++|.+++. ++..+..+ ++|++|+|++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 3343 6666666666666444433332 2 4666666666666542 33344442 356666666666664333
Q ss_pred ----ccccccccccccccCCCcCC
Q 001253 600 ----VQIGNLSRLTELQMGGNSFS 619 (1114)
Q Consensus 600 ----~~~~~l~~L~~L~ls~N~l~ 619 (1114)
..+..+++|+.|+|++|++.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred HHHHHHHhcCCCccEEEeccCCcc
Confidence 22344556666666666644
No 334
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.1e-23 Score=227.39 Aligned_cols=175 Identities=22% Similarity=0.155 Sum_probs=91.0
Q ss_pred eEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccc
Q 001253 417 WVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQN 496 (1114)
Q Consensus 417 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 496 (1114)
++|+|++|+|++..+..|..+++|++|+|++|+|++..+. ..+++|++|+|++|+++ .+|..+..+++|++|+|++|
T Consensus 34 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSS
T ss_pred CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCC
Confidence 3333333333333333344444444444444444422111 34445555555555554 44445555555555555555
Q ss_pred cCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCch
Q 001253 497 QFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPR 576 (1114)
Q Consensus 497 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 576 (1114)
+|++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|+|++|+++ .+|.
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~ 189 (290)
T 1p9a_G 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189 (290)
T ss_dssp CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh
Confidence 555554555555556666666666665555555555566666666666665322223344566666666666665 4555
Q ss_pred hhhhcccCCeeeccCccCC
Q 001253 577 EIGSLFQLELLKLSENELS 595 (1114)
Q Consensus 577 ~~~~l~~L~~L~L~~N~l~ 595 (1114)
.+..+.+|+.|+|++|.+.
T Consensus 190 ~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTCCCSEEECCSCCBC
T ss_pred hhcccccCCeEEeCCCCcc
Confidence 5555566666666666655
No 335
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.5e-24 Score=239.00 Aligned_cols=226 Identities=18% Similarity=0.155 Sum_probs=117.3
Q ss_pred ccceeeeccCCccCCcCc---ccccCCcceEEeeccceeeccCCchh--hccccccEeecccccCCCCcc----cccccc
Q 001253 439 SLIFLNLETNKLTGSIPT---GVTRCKSLVQLRLGGNSFTGSFPSDL--CKLANLSTVELDQNQFSGPIP----TEIGNC 509 (1114)
Q Consensus 439 ~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~l 509 (1114)
.++.|.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|+|++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 455566665555421100 01123445555555555555555555 555555555555555554333 223345
Q ss_pred ccCcEEEecCceeccCCCccccCCCCcceeeccccccccc--ccccccccccceEEECccccccCCCchhhhhcccCCee
Q 001253 510 NALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGR--IPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELL 587 (1114)
Q Consensus 510 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 587 (1114)
++|++|+|++|+|++..+..|+.+++|++|+|++|++.+. ++. +..++.+++|++|
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------------~~~~~~l~~L~~L 202 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA----------------------ALCPHKFPAIQNL 202 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT----------------------TSCTTSSCCCCSC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH----------------------HHhhhcCCCCCEE
Confidence 5555555555555554445555555555555555554321 111 1112344445555
Q ss_pred eccCccCCCcccc----cccccccccccccCCCcCCCCCChhhcCc---chhhHHhhcccccccccCCccccchhhhHhh
Q 001253 588 KLSENELSGSIPV----QIGNLSRLTELQMGGNSFSGGIPAELGSL---SSLQIALNLSYNNLSGLIPPELGNLILLEYL 660 (1114)
Q Consensus 588 ~L~~N~l~~~~p~----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l---~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L 660 (1114)
+|++|+++ .++. .++++++|++|||++|+|++.+|..+..+ ++|+ .|+|++|+|+ .+|..+. ++|+.|
T Consensus 203 ~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~-~L~Ls~N~l~-~lp~~~~--~~L~~L 277 (310)
T 4glp_A 203 ALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALN-SLNLSFAGLE-QVPKGLP--AKLRVL 277 (310)
T ss_dssp BCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCC-CEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred ECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCC-EEECCCCCCC-chhhhhc--CCCCEE
Confidence 55555554 1221 13444555555555555555545444444 3555 4666666666 3455553 567778
Q ss_pred hccCcccccCCCCccccccccceEEeccCcccC
Q 001253 661 LLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTG 693 (1114)
Q Consensus 661 ~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g 693 (1114)
||++|+|++. |. +..+++|+.|++++|+++.
T Consensus 278 ~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 278 DLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 8888888764 32 5667788888888887764
No 336
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.6e-25 Score=259.37 Aligned_cols=242 Identities=19% Similarity=0.230 Sum_probs=157.9
Q ss_pred cCcccccCCcceEEeeccceeeccCCc----hhhccccccEeecccc---cCCCCccccc-------cccccCcEEEecC
Q 001253 454 IPTGVTRCKSLVQLRLGGNSFTGSFPS----DLCKLANLSTVELDQN---QFSGPIPTEI-------GNCNALQRLHLSD 519 (1114)
Q Consensus 454 ~p~~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N---~l~~~~p~~~-------~~l~~L~~L~Ls~ 519 (1114)
++..+..+++|++|+|++|++.+..+. .+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 334444555555555555555543222 2445555566655553 3333344333 4566666666666
Q ss_pred ceecc----CCCccccCCCCcceeeccccccccccccccc----cc---------ccceEEECcccccc-CCCc---hhh
Q 001253 520 NYFTG----ELPREVGNLSNLVTFNVSSNFLTGRIPLEIF----SC---------KMLQRLDLSWNKFV-GALP---REI 578 (1114)
Q Consensus 520 N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~l---------~~L~~L~Ls~N~l~-~~~p---~~~ 578 (1114)
|+|++ .+|..+..+++|++|+|++|.+++..+..+. .+ ++|+.|+|++|+++ +.+| ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 66665 3555666666666666666666533332222 23 67777777777776 3344 356
Q ss_pred hhcccCCeeeccCccCC--C---cccccccccccccccccCCCcCC----CCCChhhcCcchhhHHhhccccccccc---
Q 001253 579 GSLFQLELLKLSENELS--G---SIPVQIGNLSRLTELQMGGNSFS----GGIPAELGSLSSLQIALNLSYNNLSGL--- 646 (1114)
Q Consensus 579 ~~l~~L~~L~L~~N~l~--~---~~p~~~~~l~~L~~L~ls~N~l~----~~~p~~~~~l~~L~~~L~Ls~N~l~~~--- 646 (1114)
..+++|++|+|++|+++ | ..|..+..+++|+.|+|++|.|+ +.+|..+..+++|+ .|+|++|++++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~-~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR-ELGLNDCLLSARGAA 262 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC-EEECTTCCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC-EEECCCCCCchhhHH
Confidence 66777777777777776 2 34446677777888888888775 56677777777777 688888887765
Q ss_pred -CCccc--cchhhhHhhhccCccccc----CCCCcc-ccccccceEEeccCcccCCCC
Q 001253 647 -IPPEL--GNLILLEYLLLNNNHLSG----EIPGSF-VNLSSLLGCNFSYNNLTGPIP 696 (1114)
Q Consensus 647 -~p~~~--~~l~~L~~L~Ls~N~l~g----~ip~~~-~~l~~l~~l~ls~N~l~g~ip 696 (1114)
+|..+ +.+++|++|+|++|+|++ .+|..+ .++++|+.|++++|++++..|
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 45555 347889999999999998 588877 668999999999999988665
No 337
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=8.2e-24 Score=236.89 Aligned_cols=203 Identities=19% Similarity=0.181 Sum_probs=150.8
Q ss_pred ccceEEEeecccccCCCCc---cccccCccceeeeccCCccCCcCccc--ccCCcceEEeeccceeeccCC----chhhc
Q 001253 414 SQLWVVDLSDNHLTGKIPR---HICRNTSLIFLNLETNKLTGSIPTGV--TRCKSLVQLRLGGNSFTGSFP----SDLCK 484 (1114)
Q Consensus 414 ~~L~~L~Ls~N~l~~~~~~---~~~~~~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~ 484 (1114)
..++.+.+.++.++...-. .+...++|++|++++|++++..|..+ ..+++|++|+|++|++++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3577888888877532111 12334679999999999999999988 899999999999999997655 44567
Q ss_pred cccccEeecccccCCCCccccccccccCcEEEecCceeccC--C--CccccCCCCcceeeccccccccccccc----ccc
Q 001253 485 LANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGE--L--PREVGNLSNLVTFNVSSNFLTGRIPLE----IFS 556 (1114)
Q Consensus 485 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~ 556 (1114)
+++|++|+|++|++++..|..|+.+++|++|||++|++.+. + +..+..+++|++|+|++|+++ .++.. +..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 99999999999999998899999999999999999998652 2 233478889999999999987 33331 345
Q ss_pred cccceEEECccccccCCCchhhhhc---ccCCeeeccCccCCCcccccccccccccccccCCCcCCC
Q 001253 557 CKMLQRLDLSWNKFVGALPREIGSL---FQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSG 620 (1114)
Q Consensus 557 l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 620 (1114)
+++|+.|||++|++++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|+.|+|++|+|++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence 6777777777777776666666555 46666666666666 4455443 456666666666553
No 338
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=3.3e-24 Score=243.46 Aligned_cols=250 Identities=20% Similarity=0.216 Sum_probs=162.3
Q ss_pred ceEEEeecccccCCCCcccccc--CccceeeeccCCccCCcCcccccCCcceEEeeccceeecc-CCchhhccccccEee
Q 001253 416 LWVVDLSDNHLTGKIPRHICRN--TSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGS-FPSDLCKLANLSTVE 492 (1114)
Q Consensus 416 L~~L~Ls~N~l~~~~~~~~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~ 492 (1114)
++.+++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 345666666554 3444444 6677777777777755444 44677777777777777655 666777777777777
Q ss_pred cccccCCCCccccccccccCcEEEecCc-eeccC-CCccccCCCCcceeecccc-ccccc-ccccccccc-cceEEECcc
Q 001253 493 LDQNQFSGPIPTEIGNCNALQRLHLSDN-YFTGE-LPREVGNLSNLVTFNVSSN-FLTGR-IPLEIFSCK-MLQRLDLSW 567 (1114)
Q Consensus 493 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~-~L~~L~Ls~ 567 (1114)
|++|++++..|..+..+++|++|+|++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|+.|+|++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 7777777667777777777777777777 56642 5555667777777777777 77643 455566677 777777777
Q ss_pred c--ccc-CCCchhhhhcccCCeeeccCcc-CCCcccccccccccccccccCCCcCCCCCCh---hhcCcchhhHHhhccc
Q 001253 568 N--KFV-GALPREIGSLFQLELLKLSENE-LSGSIPVQIGNLSRLTELQMGGNSFSGGIPA---ELGSLSSLQIALNLSY 640 (1114)
Q Consensus 568 N--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~---~~~~l~~L~~~L~Ls~ 640 (1114)
| .++ +.+|..+..+++|++|++++|. +++..+..+.++++|+.|++++|. +..|. .+.++++|+ .|++++
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~-~L~l~~ 281 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLK-TLQVFG 281 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCC-EEECTT
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCC-EEeccC
Confidence 7 444 3456666777777777777777 666666677777777777777775 22232 355555665 466665
Q ss_pred ccccccCCccccchh-hhHhhhccCcccccCCCCccc
Q 001253 641 NNLSGLIPPELGNLI-LLEYLLLNNNHLSGEIPGSFV 676 (1114)
Q Consensus 641 N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~g~ip~~~~ 676 (1114)
| ++ ...+..+. .|+.|++++|+++|..|..++
T Consensus 282 ~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 282 I-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp S-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred c-cC---HHHHHHHHhhCcceEEecccCccccCCccc
Confidence 5 22 22334442 356666666666666665544
No 339
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=7e-23 Score=221.71 Aligned_cols=191 Identities=22% Similarity=0.260 Sum_probs=133.4
Q ss_pred CCCccceEEEecCCCccEEEEEeecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCCCCCCEEEccCCCcccc
Q 001253 62 TPCGWIGVNCTTNDFGAVVFSLNLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAH 141 (1114)
Q Consensus 62 ~~C~w~gv~C~~~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 141 (1114)
+||.|.|++|... ...+++++++++. +|+.+. ++++.|+|++|++++..+..|+.+++|++|+|++|.+++.
T Consensus 3 ~Cp~~~gC~C~~~-----~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 74 (251)
T 3m19_A 3 TCETVTGCTCNEG-----KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL 74 (251)
T ss_dssp -CHHHHSSEEEGG-----GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred cCCCCCceEcCCC-----CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc
Confidence 3789999999642 1246777777763 454444 5778888888888777777788888888888888888877
Q ss_pred cccccccccccceeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccceeccccccccccCCCCCCC
Q 001253 142 IPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQNLISGSLPSEIGGC 221 (1114)
Q Consensus 142 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 221 (1114)
.|..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++
T Consensus 75 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 154 (251)
T 3m19_A 75 SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154 (251)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcC
Confidence 77777888888888888888876666666777777777777777775555556666666666666666665555566666
Q ss_pred CccceeeccccccCCCCcccccccccccEEEecCCcccC
Q 001253 222 ESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSG 260 (1114)
Q Consensus 222 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 260 (1114)
++|++|+|++|++++..+..+..+++|+.|+|++|.+++
T Consensus 155 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 666666666666665555556666666666666666654
No 340
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.1e-24 Score=252.16 Aligned_cols=244 Identities=17% Similarity=0.216 Sum_probs=140.3
Q ss_pred ccccccccccCCEEEccccccccccc----CccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCcc
Q 001253 358 IPVELTTLKNLTKLDLSINSLTGTIP----LGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRH 433 (1114)
Q Consensus 358 ~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 433 (1114)
++..+..+++|++|+|++|.+++..+ ..+..+++|++|+|++|.+. ++++.+|..
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~---------------------~l~~~~~~~ 82 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG---------------------RVKDEIPEA 82 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT---------------------SCGGGSHHH
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC---------------------ccccchhHH
Confidence 44556667778888888887775433 23445555555555554322 222222222
Q ss_pred -------ccccCccceeeeccCCccC----CcCcccccCCcceEEeeccceeeccCCchhh----cc---------cccc
Q 001253 434 -------ICRNTSLIFLNLETNKLTG----SIPTGVTRCKSLVQLRLGGNSFTGSFPSDLC----KL---------ANLS 489 (1114)
Q Consensus 434 -------~~~~~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l---------~~L~ 489 (1114)
+..+++|++|+|++|++++ .+|..+..+++|++|+|++|.+++..+..+. .+ ++|+
T Consensus 83 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 83 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp HHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 2445566666666666654 2455556666666666666666543333333 22 6677
Q ss_pred EeecccccCC-CCcc---ccccccccCcEEEecCceec--c---CCCccccCCCCcceeeccccccc----ccccccccc
Q 001253 490 TVELDQNQFS-GPIP---TEIGNCNALQRLHLSDNYFT--G---ELPREVGNLSNLVTFNVSSNFLT----GRIPLEIFS 556 (1114)
Q Consensus 490 ~L~L~~N~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~ 556 (1114)
+|+|++|+++ +.+| ..+..+++|++|+|++|+|+ | ..|..+..+++|+.|+|++|.++ +.+|..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 7777777765 3333 34556667777777777665 2 23335666666667777666664 455656666
Q ss_pred cccceEEECccccccCC----Cchhhhh--cccCCeeeccCccCCC----cccccc-cccccccccccCCCcCCCCC
Q 001253 557 CKMLQRLDLSWNKFVGA----LPREIGS--LFQLELLKLSENELSG----SIPVQI-GNLSRLTELQMGGNSFSGGI 622 (1114)
Q Consensus 557 l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~ls~N~l~~~~ 622 (1114)
+++|+.|+|++|++++. +|..+.. +++|++|+|++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 66666666666666644 3444422 5666666666666665 355554 44566666666666665443
No 341
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=7.3e-24 Score=240.56 Aligned_cols=221 Identities=21% Similarity=0.270 Sum_probs=115.8
Q ss_pred CCEEEcccccccccccCccccc--cceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCC-CCccccccCccceee
Q 001253 368 LTKLDLSINSLTGTIPLGFQYL--TNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGK-IPRHICRNTSLIFLN 444 (1114)
Q Consensus 368 L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~L~ 444 (1114)
++.+|+++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 555666665554 2333444 4555555555555544443 23456666666666666543 455555556666666
Q ss_pred eccCCccCCcCcccccCCcceEEeeccc-eeec-cCCchhhccccccEeecccc-cCCCC-ccccccccc-cCcEEEecC
Q 001253 445 LETNKLTGSIPTGVTRCKSLVQLRLGGN-SFTG-SFPSDLCKLANLSTVELDQN-QFSGP-IPTEIGNCN-ALQRLHLSD 519 (1114)
Q Consensus 445 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~-~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~-~L~~L~Ls~ 519 (1114)
+++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|+|++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 6666665555555555666666666666 4543 24444555566666666666 55532 344455555 566666665
Q ss_pred c--eec-cCCCccccCCCCcceeeccccc-ccccccccccccccceEEECcccc-ccCCCchhhhhcccCCeeeccCc
Q 001253 520 N--YFT-GELPREVGNLSNLVTFNVSSNF-LTGRIPLEIFSCKMLQRLDLSWNK-FVGALPREIGSLFQLELLKLSEN 592 (1114)
Q Consensus 520 N--~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N 592 (1114)
| .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. ++......+..+++|+.|++++|
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 5 233 2334444455555555555555 444444455555555555555553 11111113444455555555554
No 342
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.3e-22 Score=215.99 Aligned_cols=196 Identities=17% Similarity=0.200 Sum_probs=130.5
Q ss_pred cceEEEeecccccCCCCccccccCccceeeeccCC-ccCCcCcccccCCcceEEeecc-ceeeccCCchhhccccccEee
Q 001253 415 QLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNK-LTGSIPTGVTRCKSLVQLRLGG-NSFTGSFPSDLCKLANLSTVE 492 (1114)
Q Consensus 415 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~ 492 (1114)
+|++|+|++|++++..+..|..+++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555566666666666666665 6544445666667777777776 667655556666777777777
Q ss_pred cccccCCCCccccccccccCc---EEEecCc-eeccCCCccccCCCCcc-eeecccccccccccccccccccceEEECcc
Q 001253 493 LDQNQFSGPIPTEIGNCNALQ---RLHLSDN-YFTGELPREVGNLSNLV-TFNVSSNFLTGRIPLEIFSCKMLQRLDLSW 567 (1114)
Q Consensus 493 L~~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 567 (1114)
+++|++++ +|. |..+++|+ +|++++| ++++..+..|.++++|+ .|++++|+++ .+|...+..++|+.|+|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 77777764 454 66666666 7777777 77766666677777777 7777777777 5665555556777777777
Q ss_pred cc-ccCCCchhhhhc-ccCCeeeccCccCCCcccccccccccccccccCCC
Q 001253 568 NK-FVGALPREIGSL-FQLELLKLSENELSGSIPVQIGNLSRLTELQMGGN 616 (1114)
Q Consensus 568 N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N 616 (1114)
|+ +++..+..|..+ ++|++|++++|++++ +|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 74 765556667777 777777777777773 3332 4556666666654
No 343
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.4e-22 Score=226.26 Aligned_cols=192 Identities=24% Similarity=0.325 Sum_probs=89.8
Q ss_pred ccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEE
Q 001253 436 RNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRL 515 (1114)
Q Consensus 436 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 515 (1114)
.+++|++|++++|.++. ++ .+..+++|++|+|++|++++..+ +..+++|++|+|++|++++. + .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEE
Confidence 34555555555555553 22 34555555555555555553222 55555555555555555432 2 34455555555
Q ss_pred EecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCC
Q 001253 516 HLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELS 595 (1114)
Q Consensus 516 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 595 (1114)
+|++|++++. + .+..+++|++|++++|++++. +. +..+++|+.|+|++|++++. +. +..+++|+.|++++|+++
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccC
Confidence 5555555432 2 144555555555555555422 21 44445555555555554432 21 444444555555555444
Q ss_pred CcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhccccccc
Q 001253 596 GSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLS 644 (1114)
Q Consensus 596 ~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~ 644 (1114)
+..+ +..+++|+.|+|++|++++..| +..+++|+ .|+|++|.++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~-~L~l~~N~i~ 230 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLF-IVTLTNQTIT 230 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCC-EEEEEEEEEE
T ss_pred cChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCC-EEEccCCeee
Confidence 3222 4444444444444444443221 34444443 3444444443
No 344
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.8e-22 Score=215.13 Aligned_cols=180 Identities=20% Similarity=0.220 Sum_probs=132.5
Q ss_pred ccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEec
Q 001253 439 SLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLS 518 (1114)
Q Consensus 439 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 518 (1114)
..+.++++++.++ .+|..+. ++++.|+|++|++++..+..|..+++|++|+|++|+|++..|..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556666666666 4555443 467777777777776666677777777777777777777777777777777777777
Q ss_pred CceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcc
Q 001253 519 DNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSI 598 (1114)
Q Consensus 519 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 598 (1114)
+|+|++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++++..+..|+.+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 77777766677777777888888888777544445567778888888888887666667777888888888888888766
Q ss_pred cccccccccccccccCCCcCCCC
Q 001253 599 PVQIGNLSRLTELQMGGNSFSGG 621 (1114)
Q Consensus 599 p~~~~~l~~L~~L~ls~N~l~~~ 621 (1114)
+..+..+++|+.|+|++|++.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 66777888888888888888754
No 345
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=4.5e-22 Score=213.73 Aligned_cols=178 Identities=21% Similarity=0.167 Sum_probs=82.1
Q ss_pred cCCEEEcccccccccccCccccccceeeeeccCCc-ccCCCCCCCCcCccceEEEeec-ccccCCCCccccccCccceee
Q 001253 367 NLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNS-LVGGIPQRLGAYSQLWVVDLSD-NHLTGKIPRHICRNTSLIFLN 444 (1114)
Q Consensus 367 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~L~~L~ 444 (1114)
+|++|++++|++++..+..|..+++|++|++++|+ +....+..|..+++|++|+|++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444445455555555555553 4433344444555555555554 555544444444455555555
Q ss_pred eccCCccCCcCcccccCCcce---EEeeccc-eeeccCCchhhcccccc-EeecccccCCCCccccccccccCcEEEecC
Q 001253 445 LETNKLTGSIPTGVTRCKSLV---QLRLGGN-SFTGSFPSDLCKLANLS-TVELDQNQFSGPIPTEIGNCNALQRLHLSD 519 (1114)
Q Consensus 445 Ls~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 519 (1114)
+++|++++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ +|++++|+++ .+|......++|+.|+|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 55555543 333 44444444 5555555 44443334444444444 4444444444 2222211124444444444
Q ss_pred ce-eccCCCccccCC-CCcceeeccccccc
Q 001253 520 NY-FTGELPREVGNL-SNLVTFNVSSNFLT 547 (1114)
Q Consensus 520 N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~ 547 (1114)
|+ +++..+..|.++ ++|+.|++++|+++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 42 443333444444 44444444444444
No 346
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.3e-22 Score=224.48 Aligned_cols=209 Identities=25% Similarity=0.368 Sum_probs=115.8
Q ss_pred eeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCce
Q 001253 442 FLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNY 521 (1114)
Q Consensus 442 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 521 (1114)
.+.+..+.+++.+ ....+++|++|++++|.++. +| .+..+++|++|+|++|++++..+ +..+++|++|+|++|+
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP 96 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc
Confidence 3344555554322 23455666666666666653 33 45666666666666666664333 5666666666666666
Q ss_pred eccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCccccc
Q 001253 522 FTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQ 601 (1114)
Q Consensus 522 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 601 (1114)
+++. + .+..+++|++|++++|++++ ++. +..+++|+.|++++|++++..+ ++.+++|++|++++|++++..+
T Consensus 97 l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-- 168 (308)
T 1h6u_A 97 LKNV-S-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-- 168 (308)
T ss_dssp CSCC-G-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred CCCc-h-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--
Confidence 6532 2 45555666666666666553 222 4555555555555555553322 4455555555555555553222
Q ss_pred ccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCcccccccc
Q 001253 602 IGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSL 681 (1114)
Q Consensus 602 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l 681 (1114)
+..+++|+.|++++| ++++..+ +..+++|++|+|++|++++..| +..+++|
T Consensus 169 l~~l~~L~~L~l~~n-------------------------~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L 219 (308)
T 1h6u_A 169 LANLSKLTTLKADDN-------------------------KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNL 219 (308)
T ss_dssp GTTCTTCCEEECCSS-------------------------CCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTC
T ss_pred hcCCCCCCEEECCCC-------------------------ccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCC
Confidence 444445555555554 4444322 5556666677777777765543 6667777
Q ss_pred ceEEeccCcccC
Q 001253 682 LGCNFSYNNLTG 693 (1114)
Q Consensus 682 ~~l~ls~N~l~g 693 (1114)
+.|++++|++++
T Consensus 220 ~~L~l~~N~i~~ 231 (308)
T 1h6u_A 220 FIVTLTNQTITN 231 (308)
T ss_dssp CEEEEEEEEEEC
T ss_pred CEEEccCCeeec
Confidence 777777777765
No 347
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=1.1e-21 Score=223.36 Aligned_cols=224 Identities=18% Similarity=0.149 Sum_probs=106.8
Q ss_pred cceEEeeccceeeccCCchhhccccccEeecccccCCCCcc-ccccccccCcE-EEecCceeccCCCccccCCCCcceee
Q 001253 463 SLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIP-TEIGNCNALQR-LHLSDNYFTGELPREVGNLSNLVTFN 540 (1114)
Q Consensus 463 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~-L~Ls~N~l~~~~p~~~~~l~~L~~L~ 540 (1114)
++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.++++|++ ++++.|+|+...|..|.++++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 34444444444443333344444444444444444433222 23444444332 33344444444444444455555555
Q ss_pred cccccccccccccccccccceEEECcc-ccccCCCchhhhhcc-cCCeeeccCccCCCcccccccccccccccccCC-Cc
Q 001253 541 VSSNFLTGRIPLEIFSCKMLQRLDLSW-NKFVGALPREIGSLF-QLELLKLSENELSGSIPVQIGNLSRLTELQMGG-NS 617 (1114)
Q Consensus 541 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~-N~ 617 (1114)
+++|++++..+..+....++..|++++ |++....+..|..+. .++.|+|++|+|+ .+|.......+|++|++++ |.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTT
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCc
Confidence 555554433333333444444455433 334333333344332 3555555555555 2333333344555666553 33
Q ss_pred CCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccCccc
Q 001253 618 FSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLT 692 (1114)
Q Consensus 618 l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~ 692 (1114)
++...+..|..+++|+ .|+||+|+|+...+..|.+|++|+.+++ ++++ .+| .+.++++|+.++++++.-+
T Consensus 190 l~~i~~~~f~~l~~L~-~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP-~l~~l~~L~~l~l~~~~~c 259 (350)
T 4ay9_X 190 LEELPNDVFHGASGPV-ILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP-TLEKLVALMEASLTYPSHC 259 (350)
T ss_dssp CCCCCTTTTTTEECCS-EEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CCC-CTTTCCSCCEEECSCHHHH
T ss_pred ccCCCHHHhccCcccc-hhhcCCCCcCccChhhhccchHhhhccC--CCcC-cCC-CchhCcChhhCcCCCCccc
Confidence 3322223455666665 5666666666554445555555555544 3344 455 3677888888888765443
No 348
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.85 E-value=8.9e-22 Score=215.88 Aligned_cols=163 Identities=16% Similarity=0.065 Sum_probs=126.2
Q ss_pred HHhcCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCCh---------------hhHHHHHHHHHHHhcCCCCce
Q 001253 806 VATDNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNN---------------NVDNSFRAEILTLGKIRHRNI 870 (1114)
Q Consensus 806 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~---------------~~~~~~~~E~~~l~~l~h~ni 870 (1114)
.....|++.+.||+|+||.||+|++.+|+.||+|+++....... .....+.+|+.++++++ |
T Consensus 87 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~- 163 (282)
T 1zar_A 87 RSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G- 163 (282)
T ss_dssp HTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-
T ss_pred hCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-
Confidence 34455777799999999999999998899999999965432111 12456889999999999 4
Q ss_pred eeEEeEEEecCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCC
Q 001253 871 VKLYGFCYHQGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFE 950 (1114)
Q Consensus 871 v~l~~~~~~~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~ 950 (1114)
+++.+++.. +..|+||||++||+|.+ +.. .....++.|+++||+|||+. +|+||||||+|||++ ++.
T Consensus 164 ~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~-------~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~NILl~-~~~ 230 (282)
T 1zar_A 164 LAVPKVYAW-EGNAVLMELIDAKELYR-VRV-------ENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS-EEG 230 (282)
T ss_dssp SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC-------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE-TTE
T ss_pred CCcCeEEec-cceEEEEEecCCCcHHH-cch-------hhHHHHHHHHHHHHHHHHHC---CCEeCCCCHHHEEEE-CCc
Confidence 666665543 56799999999999998 531 22446999999999999998 999999999999999 999
Q ss_pred eEEeeccCceecCCCCCCccccccccccccCcccccc----------CCCCcccchHH
Q 001253 951 AHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYT----------MKVTEKCDIYS 998 (1114)
Q Consensus 951 ~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~----------~~~~~~~Dvws 998 (1114)
+||+|||+|+.. ..|+|||++.. ..+...+|+|.
T Consensus 231 vkl~DFG~a~~~--------------~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~ 274 (282)
T 1zar_A 231 IWIIDFPQSVEV--------------GEEGWREILERDVRNIITYFSRTYRTEKDINS 274 (282)
T ss_dssp EEECCCTTCEET--------------TSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred EEEEECCCCeEC--------------CCCCHHHHHHHHHHHHHHHHHHhcCCCCChHH
Confidence 999999999742 34788997643 34455556654
No 349
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=4.5e-21 Score=218.35 Aligned_cols=238 Identities=16% Similarity=0.138 Sum_probs=128.8
Q ss_pred ccccccccCCCCCchhhhcccccceeecccccccCcccccccccccCCEEEccccccccccc-Cccccccceee-eeccC
Q 001253 322 EIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIP-LGFQYLTNLIM-LQLFD 399 (1114)
Q Consensus 322 ~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~-L~L~~ 399 (1114)
.++.++++++ .+|..+ .++++.|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| ..|.+++++.+ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3555555555 444443 2356677777777776656667777777777777777654443 45666666544 44555
Q ss_pred CcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeecc-CCccCCcCcccccCC-cceEEeeccceeecc
Q 001253 400 NSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLET-NKLTGSIPTGVTRCK-SLVQLRLGGNSFTGS 477 (1114)
Q Consensus 400 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~-N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~ 477 (1114)
|++....|..|..+++|++|++++|+++...+..+....++..|++.+ |++....+..|..+. .++.|+|++|+|+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~- 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE- 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-
Confidence 666666666666666666666666666655555555555666666643 445533334444443 45566666666653
Q ss_pred CCchhhccccccEeeccc-ccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccc
Q 001253 478 FPSDLCKLANLSTVELDQ-NQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFS 556 (1114)
Q Consensus 478 ~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 556 (1114)
+|.......+|++|++++ |.++.+.++.|.++++|++|||++|+|+...+..|.++++|+.+++ +.++ .+| .+.+
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP-~l~~ 244 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP-TLEK 244 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CCC-CTTT
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcC-cCC-Cchh
Confidence 333333344556666543 4444333344556666666666666665433333433333333322 1222 333 2444
Q ss_pred cccceEEECcc
Q 001253 557 CKMLQRLDLSW 567 (1114)
Q Consensus 557 l~~L~~L~Ls~ 567 (1114)
+++|+.+++++
T Consensus 245 l~~L~~l~l~~ 255 (350)
T 4ay9_X 245 LVALMEASLTY 255 (350)
T ss_dssp CCSCCEEECSC
T ss_pred CcChhhCcCCC
Confidence 45555555543
No 350
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=3e-21 Score=202.42 Aligned_cols=185 Identities=25% Similarity=0.288 Sum_probs=120.8
Q ss_pred CCccceEEEecCCCccEEEEEeecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCCCCCCEEEccCCCccccc
Q 001253 63 PCGWIGVNCTTNDFGAVVFSLNLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHI 142 (1114)
Q Consensus 63 ~C~w~gv~C~~~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 142 (1114)
.|.|.+|.|+.... . .+|..+ .++|++|+|++|++++..+..++.+++|++|+|++|.+++..
T Consensus 6 ~C~~~~v~c~~~~l--------------~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 6 SCSGTTVECYSQGR--------------T-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp EEETTEEECCSSCC--------------S-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred EECCCEEEecCCCc--------------c-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence 48999999975321 1 123322 347888888888888666666788888888888888888666
Q ss_pred ccccccccccceeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccceeccccccccccCCCCCCCC
Q 001253 143 PKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQNLISGSLPSEIGGCE 222 (1114)
Q Consensus 143 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 222 (1114)
+..|..+++|++|+|++|++++..+..|.++++|++|++++|+++ +..+..+..++
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------------~~~~~~~~~l~ 124 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ------------------------SLPDGVFDKLT 124 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------CCCTTTTTTCT
T ss_pred hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc------------------------ccCHhHhccCC
Confidence 666778888888888888777544444555555555555555554 33344455555
Q ss_pred ccceeeccccccCCCCcccccccccccEEEecCCcccCccccccccccccchhhcccccccCCchhhhcCCCc
Q 001253 223 SLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQVGQLPKELGSIGS 295 (1114)
Q Consensus 223 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~~l~~ 295 (1114)
+|++|+|++|++++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|.+.+.+|.+++.++.
T Consensus 125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 66666666666664444445666666666666665543 2346777777777777777777666554
No 351
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=6.7e-22 Score=236.45 Aligned_cols=210 Identities=25% Similarity=0.374 Sum_probs=128.4
Q ss_pred CCCCCCCCCCCCC-----ccceE-EEecCCCccEEEEEeecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCC
Q 001253 52 YLGNWNPNDSTPC-----GWIGV-NCTTNDFGAVVFSLNLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNC 125 (1114)
Q Consensus 52 ~~~~W~~~~~~~C-----~w~gv-~C~~~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 125 (1114)
.+.+|..+ .++| .|.|+ .|... .++.|+|+++++++ +|+.+. ++|++|+|++|+|+ .+| ..+
T Consensus 32 ~l~~W~~~-~~~~~~~~~~~~~l~~C~~~----~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l 99 (571)
T 3cvr_A 32 AWDKWEKQ-ALPGENRNEAVSLLKECLIN----QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELP 99 (571)
T ss_dssp HHHHHHTT-CCTTCCHHHHHHHHHHHHHT----TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCC
T ss_pred HHHHHhcc-CCccccccchhhhccccccC----CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---ccc
Confidence 34567553 4467 79999 78642 36677888888776 666553 67788888888776 566 446
Q ss_pred CCCCEEEccCCCcccccccccccccccceeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccceec
Q 001253 126 SSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRA 205 (1114)
Q Consensus 126 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l 205 (1114)
++|++|+|++|.|++ +|. |.+ +|++|+|++|+|++ +|. .+++|+.|++++|++++ +|. .+
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l-------- 159 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LP-------- 159 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CC--------
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cC--------
Confidence 777777777777776 565 554 77777777777764 444 45556666666665553 333 23
Q ss_pred cccccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCcccCcccccccccccc-------chhhcc
Q 001253 206 GQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSL-------ETLALY 278 (1114)
Q Consensus 206 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-------~~L~Ls 278 (1114)
++|++|+|++|++++ +|. |. ++|+.|+|++|+|+ .+|. +.. +| +.|+|+
T Consensus 160 ----------------~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 160 ----------------TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp ----------------TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred ----------------CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence 445555555555543 343 33 45555555555555 3333 332 44 666666
Q ss_pred cccccCCchhhhcCCCccceeeecccccccccCccccccc
Q 001253 279 DNKQVGQLPKELGSIGSLKYLYIYRNELNGTIPREIGKLS 318 (1114)
Q Consensus 279 ~N~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 318 (1114)
+|.+. .+|..+..+++|++|+|++|.+++.+|..+..+.
T Consensus 216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 66655 3555566667777777777777766666665544
No 352
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=6.7e-21 Score=199.75 Aligned_cols=133 Identities=20% Similarity=0.183 Sum_probs=55.5
Q ss_pred cccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECc
Q 001253 487 NLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLS 566 (1114)
Q Consensus 487 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 566 (1114)
+|++|++++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 33444444444443333334444444444444444443333333444444444444444442222223334444444444
Q ss_pred cccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCC
Q 001253 567 WNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFS 619 (1114)
Q Consensus 567 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 619 (1114)
+|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 44444333333444444444444444444333333444444444444444443
No 353
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=3.7e-21 Score=230.04 Aligned_cols=167 Identities=26% Similarity=0.363 Sum_probs=86.8
Q ss_pred ccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEec
Q 001253 439 SLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLS 518 (1114)
Q Consensus 439 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 518 (1114)
+|++|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +.. +|++|+|++|+|++ +|. .+++|+.|+|+
T Consensus 81 ~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 81 QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINAD 148 (571)
T ss_dssp TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCC
Confidence 3444444444444 233 223445555555555543 333 332 55555555555554 333 34555555555
Q ss_pred CceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccC-------CeeeccC
Q 001253 519 DNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQL-------ELLKLSE 591 (1114)
Q Consensus 519 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~L~~ 591 (1114)
+|+|++ +|. .+++|+.|+|++|+|++ +|. +. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++
T Consensus 149 ~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 149 NNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred CCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence 555553 333 34555555555555553 444 33 55566666666555 4444 332 44 6666666
Q ss_pred ccCCCcccccccccccccccccCCCcCCCCCChhhcCcc
Q 001253 592 NELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLS 630 (1114)
Q Consensus 592 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~ 630 (1114)
|+|+ .+|..+..+++|+.|+|++|+|++.+|..+..+.
T Consensus 217 N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred Ccce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 6666 4566666666666666666666666666655543
No 354
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=2.3e-21 Score=204.76 Aligned_cols=179 Identities=21% Similarity=0.207 Sum_probs=126.3
Q ss_pred eeecccccccccccccccccccceEEECccccccCCCc-hhhhhcccCCeeeccCccCCCcccccccccccccccccCCC
Q 001253 538 TFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALP-REIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGN 616 (1114)
Q Consensus 538 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N 616 (1114)
.+++++|.++ .+|..+. ..++.|+|++|++++..| ..|..+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4444444444 3443332 234556666666654433 34566667777777777777666666777777777777777
Q ss_pred cCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCC
Q 001253 617 SFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIP 696 (1114)
Q Consensus 617 ~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip 696 (1114)
+|++..|..|..+++|+ .|+|++|+|++..|..|..+++|++|+|++|+|++.+|..|..+++|+.|++++|+|+|.++
T Consensus 92 ~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLK-TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCC-EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCC-EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 77776677777777777 68888888888888888889999999999999999999999999999999999999999998
Q ss_pred CcccccccccccccCCCCCCCCCC
Q 001253 697 SSQTFQNMSVNSFSGSKGLCGGPL 720 (1114)
Q Consensus 697 ~~~~~~~~~~~~~~~n~~lc~~p~ 720 (1114)
..+...++...........|+.|.
T Consensus 171 l~~l~~~~~~~~~~~~~~~C~~P~ 194 (220)
T 2v70_A 171 LAWLGEWLRKKRIVTGNPRCQKPY 194 (220)
T ss_dssp GHHHHHHHHHSCCBCCCCEEEESG
T ss_pred hHHHHHHHHhcCccccCCccCCCh
Confidence 766555554333322334676654
No 355
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=6.4e-21 Score=201.39 Aligned_cols=179 Identities=22% Similarity=0.248 Sum_probs=121.3
Q ss_pred eeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCc
Q 001253 538 TFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNS 617 (1114)
Q Consensus 538 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~ 617 (1114)
.+++++|.++ .+|..+. ++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|+
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 3444444444 3443332 355555666666555445556666666666666666665556666666666777777777
Q ss_pred CCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCCC
Q 001253 618 FSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPS 697 (1114)
Q Consensus 618 l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~ 697 (1114)
|++..+..|..+++|+ .|+|++|+|++..|..|..+++|++|+|++|+|++..++.|..+++|+.|++++|+|.|.++.
T Consensus 92 l~~l~~~~f~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQ-LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCccCHhHccCCCCCC-EEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 7655555566677776 677777777777778888888899999999999988888899999999999999999998876
Q ss_pred cccccccccccccCCCCCCCCCC
Q 001253 698 SQTFQNMSVNSFSGSKGLCGGPL 720 (1114)
Q Consensus 698 ~~~~~~~~~~~~~~n~~lc~~p~ 720 (1114)
.+...++...........|..|.
T Consensus 171 ~~l~~~l~~~~~~~~~~~C~~P~ 193 (220)
T 2v9t_B 171 KWLADYLHTNPIETSGARCTSPR 193 (220)
T ss_dssp HHHHHHHHHCCCBCSCCBEEESG
T ss_pred HHHHHHHHhCCCCccCCCcCCch
Confidence 55444444434444445676654
No 356
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=3.6e-21 Score=239.13 Aligned_cols=240 Identities=21% Similarity=0.230 Sum_probs=107.6
Q ss_pred CCCcchHHHHHHhHhhcc-CCCCCCCCCCCCCCCCCccceEEEecCCCccEEEEEeecCCCcCcccCCCCCCCCccCEEE
Q 001253 30 GLVNIEGQILLLIKSKLV-DNSNYLGNWNPNDSTPCGWIGVNCTTNDFGAVVFSLNLTKMNLSGYLSPNIGGLVHLTALD 108 (1114)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~-~~~~~~~~W~~~~~~~C~w~gv~C~~~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~ 108 (1114)
+....++++|+++..... +....-++|.......+.|.+++++. .+++.++|.++++.+. +. ..++.++
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----~~~~~l~L~~n~~~~~-~~-----~~l~~l~ 197 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST----PLTPKIELFANGKDEA-NQ-----ALLQHKK 197 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC----CccceEEeeCCCCCcc-hh-----hHhhcCc
Confidence 455678999999998864 23344567865555567999998865 3577888888777662 22 2345556
Q ss_pred ecCCcccCCCCcccCCCCCCCEEEccCCCcccccccccccccccceeccccccccCCCCcccccCcccchhhhcccccCC
Q 001253 109 LSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISG 188 (1114)
Q Consensus 109 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~ 188 (1114)
|+.|.|.+ ++++.|.+. ..|..|..+++|++|+|++|++. .+|..+.++++|++|+|++|.|+
T Consensus 198 Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~- 260 (727)
T 4b8c_D 198 LSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT- 260 (727)
T ss_dssp ---------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-
T ss_pred cCcccccC--------------cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-
Confidence 66655542 233444444 34555666666666666666665 55555556666666666666666
Q ss_pred CCCCCccccccccceeccccccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCcccCcccccccc
Q 001253 189 SLPPTLGNLKRLKSFRAGQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGN 268 (1114)
Q Consensus 189 ~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 268 (1114)
.+|..|++|++|++|+|++|.|+ .+|..|++|++|++|+|++|.|+ .+|..|+.+++|+.|+|++|.|++.+|..+..
T Consensus 261 ~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 56666666667777777777766 56777777777777777777776 66777777777777777777777777776665
Q ss_pred ccc-cchhhcccccccCCchhhhcCCCccceeeeccc
Q 001253 269 CTS-LETLALYDNKQVGQLPKELGSIGSLKYLYIYRN 304 (1114)
Q Consensus 269 l~~-L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n 304 (1114)
+.. +..|+|++|.+.+.+|. .|+.|++++|
T Consensus 339 ~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 339 KSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred cchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 432 23467777777776664 3455556555
No 357
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.81 E-value=1e-20 Score=235.19 Aligned_cols=192 Identities=24% Similarity=0.293 Sum_probs=124.7
Q ss_pred ecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECcccccc
Q 001253 492 ELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFV 571 (1114)
Q Consensus 492 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 571 (1114)
+++.|++. ..|..+..++.|+.|+|++|.|. .+|..+.++++|++|+|++|.|+ .+|..+..+++|+.|+|++|+|+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 45556665 66777888888888888888887 66767778889999999999998 88888888999999999999998
Q ss_pred CCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccc
Q 001253 572 GALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPEL 651 (1114)
Q Consensus 572 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~ 651 (1114)
.+|..|+.+++|++|+|++|.|+ .+|..|+++++|+.|+|++|+|++.+|..+..+......++|++|.++|.+|..
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~- 360 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE- 360 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-
Confidence 77999999999999999999997 778889999999999999999999999988876655546899999999998875
Q ss_pred cchhhhHhhhccCc--------ccccCCCCccccccccceEEeccCcccCC
Q 001253 652 GNLILLEYLLLNNN--------HLSGEIPGSFVNLSSLLGCNFSYNNLTGP 694 (1114)
Q Consensus 652 ~~l~~L~~L~Ls~N--------~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ 694 (1114)
|+.|++++| .|++.++..+.++..+....+++|-+++.
T Consensus 361 -----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 361 -----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp ----------------------------------------------CCCGG
T ss_pred -----cceeEeecccccccccCCccccccchhhcccccceeeeeccccccc
Confidence 556777777 56666666667777777788888877653
No 358
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.80 E-value=5.9e-22 Score=238.49 Aligned_cols=202 Identities=21% Similarity=0.179 Sum_probs=143.5
Q ss_pred CCcceEEeeccceeeccCCchhhccccccEeeccccc-------------CCCCccccccccccCcEEE-ecCceeccCC
Q 001253 461 CKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQ-------------FSGPIPTEIGNCNALQRLH-LSDNYFTGEL 526 (1114)
Q Consensus 461 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~~L~-Ls~N~l~~~~ 526 (1114)
+++|+.|+|++|+++ .+|..++.+++|++|++++|. +.+.+|..++++++|+.|+ ++.|.+.
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--- 423 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--- 423 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH---
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc---
Confidence 444444445554444 444455555555555544443 4556777788888888888 6777653
Q ss_pred CccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccc
Q 001253 527 PREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLS 606 (1114)
Q Consensus 527 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 606 (1114)
+|..+.+++|.++. +|. ..|+.|+|++|+|++ +|. ++.+++|+.|+|++|+|+ .+|..+++++
T Consensus 424 --------~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 424 --------DLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp --------HHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred --------hhhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence 46677777887773 332 247888888888885 565 888888888888888888 7788888888
Q ss_pred cccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccC-CccccchhhhHhhhccCcccccCCCCc---cccccccc
Q 001253 607 RLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLI-PPELGNLILLEYLLLNNNHLSGEIPGS---FVNLSSLL 682 (1114)
Q Consensus 607 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~g~ip~~---~~~l~~l~ 682 (1114)
+|+.|+|++|+|++ +| .++.+++|+ .|+|++|+|++.+ |..++.+++|+.|+|++|+|++.+|.. +..+++|+
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~-~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQ-ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCC-EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCc-EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 88888888888886 56 788888887 6888888888877 888888888888888888888776543 23367777
Q ss_pred eEEe
Q 001253 683 GCNF 686 (1114)
Q Consensus 683 ~l~l 686 (1114)
.||+
T Consensus 564 ~L~l 567 (567)
T 1dce_A 564 SILT 567 (567)
T ss_dssp EEEC
T ss_pred ccCC
Confidence 7764
No 359
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.1e-19 Score=219.99 Aligned_cols=170 Identities=22% Similarity=0.302 Sum_probs=83.6
Q ss_pred CccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEe
Q 001253 438 TSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHL 517 (1114)
Q Consensus 438 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 517 (1114)
++|+.|++++|.+.. ++ .+..+++|+.|+|++|++++..| +..+++|+.|+|++|+|++ +| .+..+++|+.|+|
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 344444444444442 22 24444444444444444443222 4445555555555555542 12 3455555555555
Q ss_pred cCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCc
Q 001253 518 SDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGS 597 (1114)
Q Consensus 518 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 597 (1114)
++|+|++. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|+|++.
T Consensus 117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 117 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp TTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred cCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 55555432 2345555555555555555532 344455555555555555554433 55555555555555555532
Q ss_pred ccccccccccccccccCCCcCCCC
Q 001253 598 IPVQIGNLSRLTELQMGGNSFSGG 621 (1114)
Q Consensus 598 ~p~~~~~l~~L~~L~ls~N~l~~~ 621 (1114)
..+..+++|+.|+|++|++++.
T Consensus 191 --~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 191 --RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GGGTTCTTCSEEECCSEEEECC
T ss_pred --hHHccCCCCCEEEccCCcCcCC
Confidence 2355555566666666655543
No 360
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=8.8e-19 Score=186.26 Aligned_cols=157 Identities=25% Similarity=0.318 Sum_probs=105.5
Q ss_pred CCCccceEEEecCCCccEEEEEeecCCCcCcccCCCCCCCCccCEEEecCCcccCCCCcccCCCCCCCEEEccCCCcccc
Q 001253 62 TPCGWIGVNCTTNDFGAVVFSLNLTKMNLSGYLSPNIGGLVHLTALDLSFNQLSRNIPKEIGNCSSLEVLNLNNNRLEAH 141 (1114)
Q Consensus 62 ~~C~w~gv~C~~~~~~~~v~~l~l~~~~l~g~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 141 (1114)
+.|+|.+|.|+.... +.+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|.++..
T Consensus 17 ~~Cs~~~v~c~~~~l---------------~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i 79 (229)
T 3e6j_A 17 CSCSGTTVDCRSKRH---------------ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79 (229)
T ss_dssp CEEETTEEECTTSCC---------------SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CEEeCCEeEccCCCc---------------CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc
Confidence 369999999965321 13344333 6788888888888887788888888888888888888766
Q ss_pred cccccccccccceeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccceeccccccccccCCCCCCC
Q 001253 142 IPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKSFRAGQNLISGSLPSEIGGC 221 (1114)
Q Consensus 142 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 221 (1114)
.+..|..+++|++|+|++|+|++..+..|..+++|++|++++|+++ .+|.. +..+
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~------------------------~~~l 134 (229)
T 3e6j_A 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG------------------------IERL 134 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTT------------------------GGGC
T ss_pred ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcc------------------------cccC
Confidence 6666788888888888888887555555566666666666666555 44444 4445
Q ss_pred CccceeeccccccCCCCcccccccccccEEEecCCcccC
Q 001253 222 ESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSG 260 (1114)
Q Consensus 222 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 260 (1114)
++|++|+|++|++++..+..+..+++|+.|+|++|.+.+
T Consensus 135 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 555555555555554444445555555566666665553
No 361
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=3.3e-19 Score=196.94 Aligned_cols=149 Identities=28% Similarity=0.307 Sum_probs=68.0
Q ss_pred cccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcE
Q 001253 435 CRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQR 514 (1114)
Q Consensus 435 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 514 (1114)
..+++|++|++++|++++..+ +..+++|++|++++|++++ + ..+..+++|++|++++|++++. ..+..+++|+.
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~ 138 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLES 138 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCE
T ss_pred hcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCE
Confidence 333444444444444443222 4444444444444444442 1 1244444455555555544432 23444555555
Q ss_pred EEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccC
Q 001253 515 LHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENEL 594 (1114)
Q Consensus 515 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 594 (1114)
|+|++|++++. ..+..+++|+.|++++|++++..+ +..+++|+.|+|++|++++ +| .+..+++|+.|++++|++
T Consensus 139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred EEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcc
Confidence 55555555432 344445555555555555543222 4445555555555555543 22 245555555555555555
Q ss_pred C
Q 001253 595 S 595 (1114)
Q Consensus 595 ~ 595 (1114)
+
T Consensus 213 ~ 213 (291)
T 1h6t_A 213 L 213 (291)
T ss_dssp E
T ss_pred c
Confidence 4
No 362
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=7.6e-19 Score=212.60 Aligned_cols=190 Identities=23% Similarity=0.272 Sum_probs=106.9
Q ss_pred cccccccccccCCCCCchhhhcccccceeecccccccCcccccccccccCCEEEcccccccccccCccccccceeeeecc
Q 001253 319 SALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLF 398 (1114)
Q Consensus 319 ~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 398 (1114)
.+..+.++.+.+.+..+ +..+.+|+.|++++|.+.... .+..+++|+.|+|++|+|++..+ +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 34444555554443322 345556666666666665432 35666666667776666665444 5666666666666
Q ss_pred CCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccC
Q 001253 399 DNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSF 478 (1114)
Q Consensus 399 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 478 (1114)
+|.+.+. ..+..+++|+.|+|++|+|++. ..+..+++|+.|+|++|+|++. ..+..+++|+.|+|++|+|++..
T Consensus 96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 6666542 2455666666666666666542 2355556666666666666543 34555556666666666555443
Q ss_pred CchhhccccccEeecccccCCCCccccccccccCcEEEecCceecc
Q 001253 479 PSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTG 524 (1114)
Q Consensus 479 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 524 (1114)
| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|.+++
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 3 55555566666666655532 235555556666666665554
No 363
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=5.4e-19 Score=195.27 Aligned_cols=171 Identities=27% Similarity=0.355 Sum_probs=87.3
Q ss_pred cccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccce
Q 001253 363 TTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIF 442 (1114)
Q Consensus 363 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 442 (1114)
..+++|+.|++++|.+++. + .+..+++|++|++++|++.+..+ +..+++|++|+|++|++++. ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3455566666666655532 2 24555555555555555554333 45555555555555555531 12455555555
Q ss_pred eeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCcee
Q 001253 443 LNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYF 522 (1114)
Q Consensus 443 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 522 (1114)
|++++|++++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|+|++|+|
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 55555555532 2344555555555555555532 345555555555555555554333 55555555555555555
Q ss_pred ccCCCccccCCCCcceeeccccccc
Q 001253 523 TGELPREVGNLSNLVTFNVSSNFLT 547 (1114)
Q Consensus 523 ~~~~p~~~~~l~~L~~L~Ls~N~l~ 547 (1114)
++ ++ .+..+++|+.|++++|+++
T Consensus 191 ~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 191 SD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred CC-Ch-hhccCCCCCEEECcCCccc
Confidence 53 22 2445555555555555544
No 364
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=7.1e-19 Score=200.98 Aligned_cols=156 Identities=22% Similarity=0.135 Sum_probs=75.7
Q ss_pred ceEEeeccceeeccCCchhh-ccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecc
Q 001253 464 LVQLRLGGNSFTGSFPSDLC-KLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVS 542 (1114)
Q Consensus 464 L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 542 (1114)
++.|+|++|+|++..+..+. .+++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44555555555544444444 45555555555555554444445555555555555555554444445555555555555
Q ss_pred cccccccccccccccccceEEECccccccCCCchhh---hhcccCCeeeccCccCCCccccccccccc--ccccccCCCc
Q 001253 543 SNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREI---GSLFQLELLKLSENELSGSIPVQIGNLSR--LTELQMGGNS 617 (1114)
Q Consensus 543 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~ls~N~ 617 (1114)
+|+|++..|..+..+++|+.|+|++|+|++..+..| ..+++|+.|+|++|+|++..+..+..++. ++.|+|++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 555554444444455555555555555553222222 33445555555555555333334444443 2455555555
Q ss_pred CC
Q 001253 618 FS 619 (1114)
Q Consensus 618 l~ 619 (1114)
+.
T Consensus 201 ~~ 202 (361)
T 2xot_A 201 LE 202 (361)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 365
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=5.4e-19 Score=187.92 Aligned_cols=154 Identities=27% Similarity=0.257 Sum_probs=103.6
Q ss_pred eeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCc
Q 001253 538 TFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNS 617 (1114)
Q Consensus 538 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~ 617 (1114)
.++.++++++ .+|..+. ++|+.|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+
T Consensus 23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 3444444444 3443332 455555666666655555556666666666666666654444455666666666666666
Q ss_pred CCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCC
Q 001253 618 FSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIP 696 (1114)
Q Consensus 618 l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip 696 (1114)
|++..+..|..+++|+ .|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..|..+++|+.|++++|++.|.++
T Consensus 100 l~~l~~~~~~~l~~L~-~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLK-ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCTTTTTTCTTCC-EEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCccChhHhCcchhhC-eEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 6655555566666666 5777777776 457777788888889999999988877888889999999999999998887
No 366
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.5e-18 Score=198.19 Aligned_cols=176 Identities=22% Similarity=0.225 Sum_probs=142.7
Q ss_pred eEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccc-cCCcceEEeeccceeeccCCchhhccccccEeeccc
Q 001253 417 WVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVT-RCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQ 495 (1114)
Q Consensus 417 ~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 495 (1114)
+.+++++|.++ .+|..+. +.++.|+|++|+|++..+..+. .+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777777776 3454443 3577888888888876666676 888888888888888877778888888999999999
Q ss_pred ccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccc----cccccceEEECcccccc
Q 001253 496 NQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEI----FSCKMLQRLDLSWNKFV 571 (1114)
Q Consensus 496 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~Ls~N~l~ 571 (1114)
|+|++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|+ .+|..+ ..+++|+.|+|++|+|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 9998777778888999999999999998888888999999999999999998 455554 46899999999999999
Q ss_pred CCCchhhhhccc--CCeeeccCccCCC
Q 001253 572 GALPREIGSLFQ--LELLKLSENELSG 596 (1114)
Q Consensus 572 ~~~p~~~~~l~~--L~~L~L~~N~l~~ 596 (1114)
+..+..+..++. |+.|+|++|.+..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 766678888887 4899999999873
No 367
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=181.19 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=50.9
Q ss_pred cccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCe
Q 001253 507 GNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLEL 586 (1114)
Q Consensus 507 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 586 (1114)
..+++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..+..+++|++|+|++|++++..|..|..+++|++
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 33333333344434333333333444444444444444444333333334444444444444444444444444444555
Q ss_pred eeccCccCCCcccccccccccccccccCCCcCCC
Q 001253 587 LKLSENELSGSIPVQIGNLSRLTELQMGGNSFSG 620 (1114)
Q Consensus 587 L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 620 (1114)
|+|++|++++..|..|..+++|+.|+|++|++.+
T Consensus 134 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp EECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred EECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 5555555554444455555555555555555544
No 368
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=4.2e-19 Score=183.13 Aligned_cols=158 Identities=26% Similarity=0.348 Sum_probs=116.4
Q ss_pred eEEECccccccCCCchhhhhcccCCeeeccCccCCCcccc-cccccccccccccCCCcCCCCCChhhcCcchhhHHhhcc
Q 001253 561 QRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPV-QIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLS 639 (1114)
Q Consensus 561 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls 639 (1114)
+.+++++|.++ .+|..+.. +|++|++++|++++..+. .|+.+++|++|+|++|+|++.+|..|..+++|+ .|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ-ELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC-EEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC-EEECC
Confidence 45666666664 44544432 666666666666654443 366777777777777777777777777777777 67788
Q ss_pred cccccccCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCCCcccccccccccccCCCCCCCCC
Q 001253 640 YNNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPSSQTFQNMSVNSFSGSKGLCGGP 719 (1114)
Q Consensus 640 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~p 719 (1114)
+|+|++..|..|+++++|++|+|++|+|++.+|..|..+++|+.|++++|+|+|.+|..+...++....+.++...|+.|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 88888877778888888999999999999998999999999999999999999988876555555555566667778877
Q ss_pred CCC
Q 001253 720 LQN 722 (1114)
Q Consensus 720 ~~~ 722 (1114)
...
T Consensus 167 ~~l 169 (192)
T 1w8a_A 167 SKV 169 (192)
T ss_dssp TTT
T ss_pred hHH
Confidence 543
No 369
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=2.9e-18 Score=180.91 Aligned_cols=132 Identities=23% Similarity=0.238 Sum_probs=64.9
Q ss_pred ccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECcc
Q 001253 488 LSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSW 567 (1114)
Q Consensus 488 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 567 (1114)
|++|+|++|+|++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|+...+..+..+++|+.|+|++
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence 34444444444433333444444444444444444444444444444444444444444422222233445555555555
Q ss_pred ccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCC
Q 001253 568 NKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFS 619 (1114)
Q Consensus 568 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 619 (1114)
|++++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++.
T Consensus 114 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 114 NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555444555555555555555555555554555555666666666666654
No 370
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=3.2e-20 Score=223.45 Aligned_cols=217 Identities=18% Similarity=0.108 Sum_probs=128.8
Q ss_pred CCCCCCCEEEccCCCcccccccccccccccceeccccccccCCCCcccccCcccchhhhcccccCCCCCCCccccccccc
Q 001253 123 GNCSSLEVLNLNNNRLEAHIPKELGNLSSLTILNIYNNRISGPFPKEIGKLSALSQLVAYSNNISGSLPPTLGNLKRLKS 202 (1114)
Q Consensus 123 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~n~i~~~~p~~l~~l~~L~~ 202 (1114)
..+++|+.|+|++|.++ .+|..+++|++|+.|++++|.....+| . .+..+++.+.+|..++++++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~----------~-ll~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTII----------L-LMRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHH----------H-HHHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHH----------H-HHHhcccccCCHHHHHHHHhccc
Confidence 55677777777777776 567777777777777776654110000 0 01111234455556666666666
Q ss_pred ee-ccccccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCcccCccccccccccccchhhccccc
Q 001253 203 FR-AGQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNK 281 (1114)
Q Consensus 203 L~-l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 281 (1114)
|+ ++.|.+ .+|+.+.+++|.++. +|. ..|+.|+|++|+|++ +|. ++++++|+.|+|++|.
T Consensus 414 L~~l~~n~~-----------~~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 414 VDPMRAAYL-----------DDLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HCGGGHHHH-----------HHHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred Ccchhhccc-----------chhhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence 66 454443 245555556665552 221 135666666666664 344 6666666666666666
Q ss_pred ccCCchhhhcCCCccceeeecccccccccCccccccccccccccccccCCCCC-chhhhcccccceeecccccccCcccc
Q 001253 282 QVGQLPKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEI-PVELSKILGLELLYLFENKLTGVIPV 360 (1114)
Q Consensus 282 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~ 360 (1114)
+. .+|..|+.+++|++|+|++|+|++ +| .++.+++|++|++++|++++.. |..+..+++|+.|+|++|.+++.++.
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 55 556666666666666666666664 45 6666666777777777666665 66677777777777777777765442
Q ss_pred ---cccccccCCEEEc
Q 001253 361 ---ELTTLKNLTKLDL 373 (1114)
Q Consensus 361 ---~~~~l~~L~~L~L 373 (1114)
.+..+++|+.|++
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 2334677777764
No 371
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=9.5e-19 Score=190.10 Aligned_cols=169 Identities=20% Similarity=0.261 Sum_probs=99.0
Q ss_pred CccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEe
Q 001253 438 TSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHL 517 (1114)
Q Consensus 438 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 517 (1114)
.++..+++++|.+++. + .+..+++|++|++++|+++ .+| .+..+++|++|+|++|+|++..+ +..+++|+.|+|
T Consensus 19 ~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 3455555666665532 2 3555666666666666665 333 45566666666666666664433 666666666666
Q ss_pred cCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCc
Q 001253 518 SDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGS 597 (1114)
Q Consensus 518 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 597 (1114)
++|+|++ +|.. .. ++|+.|+|++|++++ ++ .+..+++|+.|+|++|++++. + .+..+++|++|+|++|++++.
T Consensus 93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 6666664 2222 22 566666666666663 22 455666666666666666643 2 466666666666666666644
Q ss_pred ccccccccccccccccCCCcCCCC
Q 001253 598 IPVQIGNLSRLTELQMGGNSFSGG 621 (1114)
Q Consensus 598 ~p~~~~~l~~L~~L~ls~N~l~~~ 621 (1114)
..+..+++|+.|++++|++++.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 4556666666666666666544
No 372
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=8.4e-18 Score=174.29 Aligned_cols=154 Identities=16% Similarity=0.236 Sum_probs=88.2
Q ss_pred ccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcce
Q 001253 459 TRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVT 538 (1114)
Q Consensus 459 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 538 (1114)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44555555555555555 334 4555556666666666544 1234556666666666666666555566666666666
Q ss_pred eecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcC
Q 001253 539 FNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSF 618 (1114)
Q Consensus 539 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 618 (1114)
|++++|++++..|..+..+++|+.|+|++|++.+.+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 6666666665555556666666666666665222344 46666666666666666663 23 555666666666666665
Q ss_pred C
Q 001253 619 S 619 (1114)
Q Consensus 619 ~ 619 (1114)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 373
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=5e-18 Score=184.41 Aligned_cols=169 Identities=19% Similarity=0.245 Sum_probs=95.7
Q ss_pred cccceeecccccccCcccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEe
Q 001253 342 LGLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDL 421 (1114)
Q Consensus 342 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 421 (1114)
.++..+++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++.+..+ +..+++|++|+|
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34445555555555332 34555666666666666653 23 45555556666666655554433 555666666666
Q ss_pred ecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCC
Q 001253 422 SDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGP 501 (1114)
Q Consensus 422 s~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 501 (1114)
++|++++. |... . ++|++|++++|++++. ..+..+++|++|+|++|++++. + .+..+++|++|+|++|++++.
T Consensus 93 ~~N~l~~l-~~~~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNL-NGIP-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCC-TTCC-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCc-Cccc-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 66666542 2211 1 5666666666666642 2356666666666666666643 2 456666666666666666644
Q ss_pred ccccccccccCcEEEecCceeccC
Q 001253 502 IPTEIGNCNALQRLHLSDNYFTGE 525 (1114)
Q Consensus 502 ~p~~~~~l~~L~~L~Ls~N~l~~~ 525 (1114)
..+..+++|+.|++++|.+++.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 4556666666666666666643
No 374
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.72 E-value=2.6e-18 Score=186.13 Aligned_cols=139 Identities=22% Similarity=0.197 Sum_probs=107.8
Q ss_pred CcCCceecccCCeEEEEEEe-CCCcE--EEEEEecccCCCC---------------------hhhHHHHHHHHHHHhcCC
Q 001253 811 FDERFVIGRGACGTVYRAVL-RTGHT--VAVKKLASNREGN---------------------NNVDNSFRAEILTLGKIR 866 (1114)
Q Consensus 811 ~~~~~~lG~G~~g~Vy~~~~-~~g~~--vavK~~~~~~~~~---------------------~~~~~~~~~E~~~l~~l~ 866 (1114)
|++.+.||+|+||.||+|.+ .+|+. ||||+++...... ......+.+|+..+++++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999998 67889 9999976542110 011235788999999998
Q ss_pred CCce--eeEEeEEEecCceEEEEecCCC-C----CHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH-hCCCCCeEecCC
Q 001253 867 HRNI--VKLYGFCYHQGSNLLMYEYMAR-G----SLGELLHGASSTLDWQTRFMIALGAAEGLSYLH-HDCKPRIFHRDI 938 (1114)
Q Consensus 867 h~ni--v~l~~~~~~~~~~~lv~E~~~~-g----sL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH-~~~~~~ivH~Dl 938 (1114)
|+++ +.++++ +..++||||+.+ | +|.++... .++..+..++.|++.|++||| +. +|+||||
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH~~~---givHrDl 197 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLYQEA---ELVHADL 197 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHHHTS---CEECSSC
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHHHHC---CEEeCCC
Confidence 8754 334432 367899999942 4 77776542 234567789999999999999 87 9999999
Q ss_pred CCCCeEECCCCCeEEeeccCceec
Q 001253 939 KSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 939 k~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
||+|||+++ .++|+|||+|...
T Consensus 198 kp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 198 SEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp STTSEEESS--SEEECCCTTCEET
T ss_pred CHHHEEEcC--cEEEEECcccccC
Confidence 999999998 9999999999864
No 375
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=2.4e-17 Score=170.87 Aligned_cols=150 Identities=15% Similarity=0.240 Sum_probs=87.0
Q ss_pred CccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEe
Q 001253 438 TSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHL 517 (1114)
Q Consensus 438 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 517 (1114)
++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..+..+++|++|+|
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 34444444444444 233 3445555555555555443 2234555666666666666666555566666666666666
Q ss_pred cCceeccCCCccccCCCCcceeeccccc-ccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccCccCC
Q 001253 518 SDNYFTGELPREVGNLSNLVTFNVSSNF-LTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELS 595 (1114)
Q Consensus 518 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 595 (1114)
++|++++..|..+..+++|++|++++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 6666665556666666666666666666 44 444 46666777777777777764 33 5667777777777777765
No 376
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.2e-16 Score=164.61 Aligned_cols=132 Identities=28% Similarity=0.343 Sum_probs=79.1
Q ss_pred cEeecccccCCCCccccccccccCcEEEecCceeccCCCc-cccCCCCcceeecccccccccccccccccccceEEECcc
Q 001253 489 STVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPR-EVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSW 567 (1114)
Q Consensus 489 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 567 (1114)
+.+++++|+++ .+|..+.. +|++|+|++|+|++..+. .|..+++|++|+|++|+|++..|..+..+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 44555555554 34443322 555666666666544433 355566666666666666655555566666666666666
Q ss_pred ccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCC
Q 001253 568 NKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIP 623 (1114)
Q Consensus 568 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 623 (1114)
|+|++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 66665555556666666666666666666666666677777777777777765543
No 377
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.7e-17 Score=170.90 Aligned_cols=157 Identities=24% Similarity=0.269 Sum_probs=108.6
Q ss_pred eEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhccc
Q 001253 561 QRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSY 640 (1114)
Q Consensus 561 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~ 640 (1114)
+.+++++|.++ .+|..+. ++|++|+|++|+++ .+|..|.++++|+.|+|++|+|++..|..|..++.|+ .|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~-~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL-TLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCC-EEECCC
Confidence 34555555555 3444332 35666666666665 4556666666667777777777666666677777776 577777
Q ss_pred ccccccCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCCCcccccccccccccCCCCCCCCCC
Q 001253 641 NNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPSSQTFQNMSVNSFSGSKGLCGGPL 720 (1114)
Q Consensus 641 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lc~~p~ 720 (1114)
|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|++++|+|.|.+...+-..++...........|..|.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~ 167 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPG 167 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESG
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCch
Confidence 77777777788888899999999999998878889999999999999999999887654444443332333445777665
Q ss_pred CC
Q 001253 721 QN 722 (1114)
Q Consensus 721 ~~ 722 (1114)
..
T Consensus 168 ~l 169 (193)
T 2wfh_A 168 EM 169 (193)
T ss_dssp GG
T ss_pred HH
Confidence 43
No 378
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=4.7e-17 Score=183.45 Aligned_cols=290 Identities=15% Similarity=0.103 Sum_probs=127.6
Q ss_pred ccccchhhcccccccCCchhhhcC-CCccceeeecccccc--cccCccccccccccccccccccCCCCCchhhhc-----
Q 001253 269 CTSLETLALYDNKQVGQLPKELGS-IGSLKYLYIYRNELN--GTIPREIGKLSSALEIDFSENSLIGEIPVELSK----- 340 (1114)
Q Consensus 269 l~~L~~L~Ls~N~~~~~~p~~~~~-l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~----- 340 (1114)
+.++++|.++++ +....-..+.. +++|+.|+|++|++. ...+..+ +.+..+.+..|.+ .+..|..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhccccccc
Confidence 567777777765 22222223333 677888888888776 1111111 1122233333321 1233444
Q ss_pred ---ccccceeecccccccCcccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccce
Q 001253 341 ---ILGLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLW 417 (1114)
Q Consensus 341 ---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 417 (1114)
+++|+.++|.+ .++.+.+.+|..+++|+.|++++|.+....+..|.++.++..+.+..+...
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~-------------- 161 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY-------------- 161 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH--------------
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh--------------
Confidence 55555555555 555555555555555555555555555444555555444444444332110
Q ss_pred EEEeecccccCCCCccccccCccc-eeeeccCC-ccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeeccc
Q 001253 418 VVDLSDNHLTGKIPRHICRNTSLI-FLNLETNK-LTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQ 495 (1114)
Q Consensus 418 ~L~Ls~N~l~~~~~~~~~~~~~L~-~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 495 (1114)
..........|.++..|+ .+.+.... +...+...-....++..+.+.++-...........+++|+.|+|++
T Consensus 162 ------~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 162 ------RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK 235 (329)
T ss_dssp ------HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT
T ss_pred ------hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC
Confidence 000111112222222332 22222110 0000000001123344444443321111111111245555555555
Q ss_pred ccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcc-eeecccccccccccccccccccceEEECccccccCCC
Q 001253 496 NQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLV-TFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGAL 574 (1114)
Q Consensus 496 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 574 (1114)
|+++.+.+..|.+|++|+.|+|++| ++.+.+.+|.++++|+ .+++.+ .++..-+..|.+|++|+.|++++|+++...
T Consensus 236 n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 236 TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 5555444445555555555555555 4444455555555555 555555 444233344445555555555555555444
Q ss_pred chhhhhcccCCeee
Q 001253 575 PREIGSLFQLELLK 588 (1114)
Q Consensus 575 p~~~~~l~~L~~L~ 588 (1114)
+..|.++++|+.++
T Consensus 314 ~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 314 DELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTCCCCEEE
T ss_pred hhhhcCCcchhhhc
Confidence 44555555555443
No 379
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=5.8e-17 Score=182.69 Aligned_cols=296 Identities=13% Similarity=0.054 Sum_probs=174.1
Q ss_pred CCCcccccc--cccccEEEecCCcccCcccccccc-ccccchhhccccccc--CCchhhhcCCCccceeeeccccccccc
Q 001253 236 GEIPKEIGM--LKYLTDVILWGNQLSGVIPKELGN-CTSLETLALYDNKQV--GQLPKELGSIGSLKYLYIYRNELNGTI 310 (1114)
Q Consensus 236 ~~~p~~l~~--l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~ 310 (1114)
|.++..+.. +.++++|.++++ +....-..+.. +++|+.|||++|++. ...+. .++.++.+.+..|.+.
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~--- 85 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP--- 85 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---
T ss_pred CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---
Confidence 445555553 778999999875 22222233444 788999999999987 22222 2233566666666432
Q ss_pred Cccccc--------cccccccccccccCCCCCchhhhcccccceeecccccccCcccccccccccCCEEEcccccc----
Q 001253 311 PREIGK--------LSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSL---- 378 (1114)
Q Consensus 311 p~~l~~--------l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---- 378 (1114)
+..|.. +++|++|++.+ ++....+.+|..+++|+.+++.+|.+..+.+.+|..+.++..+.++.+..
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 345666 99999999999 88877788899999999999999999988899999988888887776432
Q ss_pred cccccCcccccccee-eeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcc
Q 001253 379 TGTIPLGFQYLTNLI-MLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTG 457 (1114)
Q Consensus 379 ~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~ 457 (1114)
.......|.++..|+ .+.+....- ++..+ ...-....+++.+.+.++-........
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~~~~~---l~~~~--------------------~~~~~~~~~~~~l~~~~~l~~~~~~~l 221 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVGAMGK---LEDEI--------------------MKAGLQPRDINFLTIEGKLDNADFKLI 221 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEECTTCC---HHHHH--------------------HHTTCCGGGCSEEEEEECCCHHHHHHH
T ss_pred ccccccccccccccceeEEecCCCc---HHHHH--------------------hhcccCccccceEEEeeeecHHHHHHH
Confidence 223344455555555 333322110 00000 000001123333333333111000000
Q ss_pred cccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCc-EEEecCceeccCCCccccCCCCc
Q 001253 458 VTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQ-RLHLSDNYFTGELPREVGNLSNL 536 (1114)
Q Consensus 458 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L 536 (1114)
...+++|+.|+|++|+++...+..|.++.+|++|+|.+| ++.+.+..|.++++|+ .+++.+ .++.+.+.+|.++++|
T Consensus 222 ~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 222 RDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp HHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred HHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 112455666666666555455555666666666666665 5545555566666666 666666 4554555666666666
Q ss_pred ceeecccccccccccccccccccceEEE
Q 001253 537 VTFNVSSNFLTGRIPLEIFSCKMLQRLD 564 (1114)
Q Consensus 537 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 564 (1114)
+.+++++|.++..-+..|.++++|+.++
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6666666666643344555566666654
No 380
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=8.3e-16 Score=154.78 Aligned_cols=132 Identities=22% Similarity=0.177 Sum_probs=61.8
Q ss_pred CcceEEeeccceee-ccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceee
Q 001253 462 KSLVQLRLGGNSFT-GSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFN 540 (1114)
Q Consensus 462 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 540 (1114)
++|++|++++|+++ +.+|..+..+++|++|++++|++++. ..+..+++|++|+|++|++++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444444 34444444444455555555544433 4444455555555555555544444444455555555
Q ss_pred cccccccccc-cccccccccceEEECccccccCCCc---hhhhhcccCCeeeccCccCC
Q 001253 541 VSSNFLTGRI-PLEIFSCKMLQRLDLSWNKFVGALP---REIGSLFQLELLKLSENELS 595 (1114)
Q Consensus 541 Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~ 595 (1114)
|++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555554211 1344444555555555555543322 24444445555555554444
No 381
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.2e-15 Score=153.63 Aligned_cols=132 Identities=20% Similarity=0.168 Sum_probs=87.1
Q ss_pred ccceEEEeeccccc-CCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEee
Q 001253 414 SQLWVVDLSDNHLT-GKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVE 492 (1114)
Q Consensus 414 ~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 492 (1114)
++|++|+|++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666665 45565566666666666666666644 5566677777777777777665666666677777777
Q ss_pred cccccCCCCc-cccccccccCcEEEecCceeccCCC---ccccCCCCcceeeccccccc
Q 001253 493 LDQNQFSGPI-PTEIGNCNALQRLHLSDNYFTGELP---REVGNLSNLVTFNVSSNFLT 547 (1114)
Q Consensus 493 L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~ 547 (1114)
|++|+|++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777776432 2566677777777777777765443 36666777777777777665
No 382
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.61 E-value=2.8e-16 Score=175.68 Aligned_cols=141 Identities=11% Similarity=0.071 Sum_probs=102.0
Q ss_pred CcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCC-----------hhhHH--------HHHHHHHHHhcCCCCcee
Q 001253 811 FDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGN-----------NNVDN--------SFRAEILTLGKIRHRNIV 871 (1114)
Q Consensus 811 ~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~-----------~~~~~--------~~~~E~~~l~~l~h~niv 871 (1114)
|++.+.||+|+||.||+|...+|+.||||+++...... ..... ...+|...+.++.+.++.
T Consensus 97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~ 176 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP 176 (397)
T ss_dssp SEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999999999986432110 00011 123456666666544432
Q ss_pred eEEeEEEecCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCC--
Q 001253 872 KLYGFCYHQGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKF-- 949 (1114)
Q Consensus 872 ~l~~~~~~~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~-- 949 (1114)
...-+.. ...++||||++|+.+.++... .....++.|++.+|.|+|+. |||||||||.|||+++++
T Consensus 177 vp~p~~~--~~~~LVME~i~G~~L~~l~~~-------~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~NILl~~dgd~ 244 (397)
T 4gyi_A 177 VPEPIAQ--SRHTIVMSLVDALPMRQVSSV-------PDPASLYADLIALILRLAKH---GLIHGDFNEFNILIREEKDA 244 (397)
T ss_dssp CCCEEEE--ETTEEEEECCSCEEGGGCCCC-------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEEEEECS
T ss_pred CCeeeec--cCceEEEEecCCccHhhhccc-------HHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeCCCCc
Confidence 1111111 234799999999888776531 12356788999999999998 999999999999998876
Q ss_pred --------CeEEeeccCceecC
Q 001253 950 --------EAHVGDFGLAKVID 963 (1114)
Q Consensus 950 --------~~kl~DfG~a~~~~ 963 (1114)
.+.|+||+.+....
T Consensus 245 ~d~~~~~~~~~iID~~Q~V~~~ 266 (397)
T 4gyi_A 245 EDPSSITLTPIIIXFPQMVSMD 266 (397)
T ss_dssp SCTTSEEEEEEECCCTTCEETT
T ss_pred ccccccccceEEEEeCCcccCC
Confidence 38999999988644
No 383
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.2e-15 Score=150.22 Aligned_cols=126 Identities=21% Similarity=0.167 Sum_probs=58.4
Q ss_pred cceEEeeccceee-ccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeec
Q 001253 463 SLVQLRLGGNSFT-GSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNV 541 (1114)
Q Consensus 463 ~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 541 (1114)
+|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..+..+++|++|+|++|++++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444444 34444444444444444444444433 34444455555555555554444444444445555555
Q ss_pred cccccccc-ccccccccccceEEECccccccCCCc---hhhhhcccCCeeecc
Q 001253 542 SSNFLTGR-IPLEIFSCKMLQRLDLSWNKFVGALP---REIGSLFQLELLKLS 590 (1114)
Q Consensus 542 s~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~ 590 (1114)
++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|++|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55554431 12344445555555555555543333 244444555554443
No 384
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.1e-15 Score=150.47 Aligned_cols=127 Identities=21% Similarity=0.211 Sum_probs=69.0
Q ss_pred ccccEeecccccCC-CCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEE
Q 001253 486 ANLSTVELDQNQFS-GPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLD 564 (1114)
Q Consensus 486 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 564 (1114)
++|+.|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 55555556666666666666666543 4455555555555555555544454444455555555
Q ss_pred CccccccCC-CchhhhhcccCCeeeccCccCCCccc---ccccccccccccccC
Q 001253 565 LSWNKFVGA-LPREIGSLFQLELLKLSENELSGSIP---VQIGNLSRLTELQMG 614 (1114)
Q Consensus 565 Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~ls 614 (1114)
+++|++++. .+..++.+++|++|++++|.+++..+ ..+..+++|+.||++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555532 22445555555555555555554333 244555555555544
No 385
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1e-15 Score=155.61 Aligned_cols=133 Identities=23% Similarity=0.244 Sum_probs=91.4
Q ss_pred eEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhccc
Q 001253 561 QRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSY 640 (1114)
Q Consensus 561 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~ 640 (1114)
+.+++++|+++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|+|++..+..+..++.|+ .|+|++
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT-ILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC-EEECCS
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccC-EEECCC
Confidence 44555555554 3333222 4566666666666655455556666666666666666655555566666666 577777
Q ss_pred ccccccCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCCC
Q 001253 641 NNLSGLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPS 697 (1114)
Q Consensus 641 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~ 697 (1114)
|++++..+..++.+++|++|+|++|+|++.++..|..+++|+.|++++|++.|.+|.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 777766666677888888888888888877777778889999999999999988874
No 386
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=8.6e-15 Score=150.66 Aligned_cols=126 Identities=23% Similarity=0.322 Sum_probs=71.2
Q ss_pred eeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCce
Q 001253 442 FLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNY 521 (1114)
Q Consensus 442 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 521 (1114)
.+++++|+++ .+|..+. ++|++|+|++|+|+ .+|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4555555555 3443332 35566666666665 455556666666666666666665555556666666666666666
Q ss_pred eccCCCccccCCCCcceeecccccccccccccccccccceEEECcccccc
Q 001253 522 FTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFV 571 (1114)
Q Consensus 522 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 571 (1114)
|++..|..|.++++|+.|+|++|+|++..+..+..+++|+.|+|++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66555555666666666666666665333333445555555555555554
No 387
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=8e-15 Score=148.93 Aligned_cols=132 Identities=20% Similarity=0.209 Sum_probs=82.4
Q ss_pred cEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccc
Q 001253 489 STVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWN 568 (1114)
Q Consensus 489 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 568 (1114)
+.+++++|+++ .+|..+ .++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+|++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45556666655 333322 246666666666666555555666666666666666666443444556666777777777
Q ss_pred cccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCcCCCCCC
Q 001253 569 KFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIP 623 (1114)
Q Consensus 569 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 623 (1114)
++++..+..+..+++|++|++++|++++..+..+..+++|+.|+|++|++.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7765555556667777777777777775555555667777777777777765443
No 388
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=1.8e-16 Score=164.42 Aligned_cols=132 Identities=22% Similarity=0.232 Sum_probs=68.5
Q ss_pred hhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccc
Q 001253 481 DLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKML 560 (1114)
Q Consensus 481 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 560 (1114)
.+..+++|++|+|++|++++ +| .+..+++|++|+|++|+|+ .+|..+..+++|++|+|++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 45555555555555555553 33 4555555555555555555 344444444555555555555552 33 34455555
Q ss_pred eEEECccccccCCCc-hhhhhcccCCeeeccCccCCCccccc----------ccccccccccccCCCcCC
Q 001253 561 QRLDLSWNKFVGALP-REIGSLFQLELLKLSENELSGSIPVQ----------IGNLSRLTELQMGGNSFS 619 (1114)
Q Consensus 561 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~----------~~~l~~L~~L~ls~N~l~ 619 (1114)
+.|+|++|++++..+ ..+..+++|++|++++|.+++.+|.. +..+++|+.|| +|+++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 555555555553221 34555555556666665555444332 45555555554 44443
No 389
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=4.2e-14 Score=162.63 Aligned_cols=249 Identities=12% Similarity=0.061 Sum_probs=130.0
Q ss_pred cccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccc
Q 001253 357 VIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICR 436 (1114)
Q Consensus 357 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 436 (1114)
+...+|.+. +|+.+++..| ++.....+|.+. +|+.+.+.+ .+.......|..+.+|+.++|++|+++......|.
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~- 201 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV- 201 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-
Confidence 334444442 4555555444 443444444442 355555543 34434444555555555555555555533333333
Q ss_pred cCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEE
Q 001253 437 NTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLH 516 (1114)
Q Consensus 437 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 516 (1114)
..+|+.+.+..+ ++.....+|.++++|+.+++..| ++.....+|.+ .+|+.+.+ .|.++.+....|.+|++|+.++
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEE
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEE
Confidence 355566665533 44344455666666666666554 34344445555 56666666 3445545556666666666666
Q ss_pred ecCceec-----cCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCCCchhhhhcccCCeeeccC
Q 001253 517 LSDNYFT-----GELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSE 591 (1114)
Q Consensus 517 Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 591 (1114)
+.+|.+. .+.+.+|.++++|+.++|.+ .++..-...|.+|++|+.++|..| ++...+.+|.++ +|+.+++++
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence 6666554 34455666666666666663 354233344445666666666433 443444555555 666666666
Q ss_pred ccCCCcccccccccc-cccccccCCCc
Q 001253 592 NELSGSIPVQIGNLS-RLTELQMGGNS 617 (1114)
Q Consensus 592 N~l~~~~p~~~~~l~-~L~~L~ls~N~ 617 (1114)
|.+....+..|.+++ +++.|++..|.
T Consensus 355 n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 355 TTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCcccccccccCCCCCccEEEeCHHH
Confidence 665544444454442 44555554443
No 390
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=8.3e-14 Score=160.11 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=57.3
Q ss_pred CcccccCCcceEEeeccceee-----ccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCcc
Q 001253 455 PTGVTRCKSLVQLRLGGNSFT-----GSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPRE 529 (1114)
Q Consensus 455 p~~~~~l~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 529 (1114)
..+|.++++|+.+.+.+|.+. ...+..|.++++|+.++|. |.++.+....|.+|++|+.++|..| ++.+.+.+
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 344444444444444444332 2334455555555555555 3344444455555666666666443 44444555
Q ss_pred ccCCCCcceeecccccccccccccccccc-cceEEECccccc
Q 001253 530 VGNLSNLVTFNVSSNFLTGRIPLEIFSCK-MLQRLDLSWNKF 570 (1114)
Q Consensus 530 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l 570 (1114)
|.++ +|+.+++++|.+....+..+..++ .++.|++..+.+
T Consensus 342 F~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 6655 566666666655533333344442 455666655543
No 391
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.8e-14 Score=146.11 Aligned_cols=131 Identities=17% Similarity=0.136 Sum_probs=67.3
Q ss_pred ccCCcceEEeeccceeeccCCchhhccc-cccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcc
Q 001253 459 TRCKSLVQLRLGGNSFTGSFPSDLCKLA-NLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLV 537 (1114)
Q Consensus 459 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 537 (1114)
..+.+|++|++++|+++ .+|. +..+. +|++|++++|+|++. ..+..+++|++|+|++|+|++..+..|..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 34445555555555555 2232 22332 555555555555533 3455555566666666655544334445555555
Q ss_pred eeecccccccccccc--cccccccceEEECccccccCCCchh----hhhcccCCeeeccCccCC
Q 001253 538 TFNVSSNFLTGRIPL--EIFSCKMLQRLDLSWNKFVGALPRE----IGSLFQLELLKLSENELS 595 (1114)
Q Consensus 538 ~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~ 595 (1114)
+|+|++|+++ .+|. .+..+++|+.|++++|.++ .+|.. +..+++|++|++++|.+.
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5555555554 3443 4445555555555555555 33332 555555555555555443
No 392
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=4.6e-16 Score=161.25 Aligned_cols=114 Identities=20% Similarity=0.196 Sum_probs=60.4
Q ss_pred cccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccC
Q 001253 433 HICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNAL 512 (1114)
Q Consensus 433 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 512 (1114)
.+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 45555555555555555553 34 4555555555555555555 445555555555555555555553 33 35555556
Q ss_pred cEEEecCceeccCCC-ccccCCCCcceeeccccccccccc
Q 001253 513 QRLHLSDNYFTGELP-REVGNLSNLVTFNVSSNFLTGRIP 551 (1114)
Q Consensus 513 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p 551 (1114)
++|+|++|+|++..+ ..+..+++|++|++++|.+++.+|
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 666666665553221 245555555555555555554433
No 393
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=3.2e-14 Score=144.22 Aligned_cols=105 Identities=18% Similarity=0.168 Sum_probs=50.5
Q ss_pred cceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCc--cccCCCCcceee
Q 001253 463 SLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPR--EVGNLSNLVTFN 540 (1114)
Q Consensus 463 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~ 540 (1114)
+|++|+|++|.+++. ..+..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 444444444444432 34444444555555555554333333344555555555555553 2333 445555555555
Q ss_pred ccccccccccccc----ccccccceEEECcccccc
Q 001253 541 VSSNFLTGRIPLE----IFSCKMLQRLDLSWNKFV 571 (1114)
Q Consensus 541 Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~ 571 (1114)
+++|.++ .+|.. +..+++|+.||+++|.+.
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5555554 33432 445555555555555543
No 394
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=7.1e-13 Score=153.14 Aligned_cols=41 Identities=5% Similarity=0.165 Sum_probs=20.8
Q ss_pred CCCCccccccccceeccccccccccCCCCCCCCccceeeccc
Q 001253 190 LPPTLGNLKRLKSFRAGQNLISGSLPSEIGGCESLQYLGLAQ 231 (1114)
Q Consensus 190 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~ 231 (1114)
...+|.++++|+.+.+..+ +......+|.++++|+.++|.+
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~ 103 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPD 103 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCC
Confidence 3345555555555555432 4434444555555555555543
No 395
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.46 E-value=6.7e-13 Score=153.38 Aligned_cols=334 Identities=11% Similarity=0.037 Sum_probs=161.3
Q ss_pred cCCCCcccccccccccEEEecCCcccCccccccccccccchhhcccccccCCchhhhcCCCccceeeecccccccccCcc
Q 001253 234 LSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCTSLETLALYDNKQVGQLPKELGSIGSLKYLYIYRNELNGTIPRE 313 (1114)
Q Consensus 234 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 313 (1114)
++.....+|..+++|+.+.|.. .++.+-..+|.+|++|+.+++.++ +.......|..+.+|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 3433345566777777777753 355444556777777777777554 33333445666666666555433 22112222
Q ss_pred ccccccccccccccccCCCCCchhhhcccccceeecccccccCcccccccccccCCEEEcccccccccccCcccccccee
Q 001253 314 IGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLI 393 (1114)
Q Consensus 314 l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 393 (1114)
|.....+.. ... +.+..+...+|.++++|+.+.+.++. .......|.++.+|+
T Consensus 136 F~~~~~~~~------------------------~~~--~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~ 188 (394)
T 4fs7_A 136 FKGCDFKEI------------------------TIP--EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLK 188 (394)
T ss_dssp TTTCCCSEE------------------------ECC--TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCC
T ss_pred eeccccccc------------------------ccC--ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCce
Confidence 322221111 111 11111223445555555555554432 223444455555555
Q ss_pred eeeccCCcccCCCCCCCCcCccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccce
Q 001253 394 MLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNS 473 (1114)
Q Consensus 394 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 473 (1114)
.+.+..| +.......|.....|+.+.+..+... +...+....+|+.+.+..+. +......+..+..|+.+.+..+.
T Consensus 189 ~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~ 264 (394)
T 4fs7_A 189 SIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNK 264 (394)
T ss_dssp BCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTT
T ss_pred EEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCc
Confidence 5555443 33233344444555554444443221 22222333455555554322 22233445555666666665554
Q ss_pred eeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeeccccccccccccc
Q 001253 474 FTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLE 553 (1114)
Q Consensus 474 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 553 (1114)
.. .....|.....++.+....+.+. ...|..+.+|+.+.+.++ ++.+...+|.++++|+.++|.++ ++..-...
T Consensus 265 ~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 338 (394)
T 4fs7_A 265 LR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS 338 (394)
T ss_dssp CE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred ce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence 33 44445555555555555544322 234555666666666544 44344555666666666666533 44222344
Q ss_pred ccccccceEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccc
Q 001253 554 IFSCKMLQRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTE 610 (1114)
Q Consensus 554 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 610 (1114)
|.+|.+|+.+++..| ++.....+|.++.+|+.+++..+ ++ .+...|.++++|++
T Consensus 339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 555666666666554 44344455666666666666543 22 22344555555554
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=6.5e-14 Score=140.89 Aligned_cols=110 Identities=26% Similarity=0.260 Sum_probs=80.5
Q ss_pred CCeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhcc
Q 001253 584 LELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLN 663 (1114)
Q Consensus 584 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 663 (1114)
.+.+++++|+++ .+|..+. ++|+.|+|++|+|++..|..|..+++|+ .|+|++|+|++..|..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~-~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLT-RLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCS-EEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCC-EEECCCCCcCccChhhccCCCCCCEEECC
Confidence 345555555555 3444442 5666677777777766666677777776 57777777777666677788888888888
Q ss_pred CcccccCCCCccccccccceEEeccCcccCCCCC
Q 001253 664 NNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPS 697 (1114)
Q Consensus 664 ~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~ 697 (1114)
+|+|++.+|..|.++++|+.|+|++|+|.|.++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 8888888777888899999999999999888763
No 397
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.8e-13 Score=138.06 Aligned_cols=108 Identities=27% Similarity=0.302 Sum_probs=71.3
Q ss_pred CeeeccCccCCCcccccccccccccccccCCCcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccC
Q 001253 585 ELLKLSENELSGSIPVQIGNLSRLTELQMGGNSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNN 664 (1114)
Q Consensus 585 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 664 (1114)
+.+++++|+++ .+|..+. ++|+.|+|++|+|++.+|..|..+++|+ .|+|++|+|++..+..|.++++|++|||++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQ-QLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCC-EEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 34455555554 3444332 4556666666666655566666666666 566666666665555567777788888888
Q ss_pred cccccCCCCccccccccceEEeccCcccCCCC
Q 001253 665 NHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIP 696 (1114)
Q Consensus 665 N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip 696 (1114)
|+|++.++..|..+++|+.|+|++|+|.+.++
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 88887666668888888888888888887665
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=1.1e-12 Score=131.89 Aligned_cols=85 Identities=21% Similarity=0.153 Sum_probs=40.2
Q ss_pred cccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECc
Q 001253 487 NLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLS 566 (1114)
Q Consensus 487 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 566 (1114)
+|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..+..+++|+.|+|+
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 34444444444444444444444444444444444444444444444455555555555543333334445555555555
Q ss_pred ccccc
Q 001253 567 WNKFV 571 (1114)
Q Consensus 567 ~N~l~ 571 (1114)
+|.++
T Consensus 111 ~N~~~ 115 (170)
T 3g39_A 111 NNPWD 115 (170)
T ss_dssp SSCBC
T ss_pred CCCCC
Confidence 55554
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=1.3e-12 Score=131.69 Aligned_cols=103 Identities=22% Similarity=0.303 Sum_probs=43.2
Q ss_pred eeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccCcEEEecCce
Q 001253 442 FLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNY 521 (1114)
Q Consensus 442 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 521 (1114)
.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 3444444443 2333222 344444444444444334444444444444444444443333333444444444444444
Q ss_pred eccCCCccccCCCCcceeeccccccc
Q 001253 522 FTGELPREVGNLSNLVTFNVSSNFLT 547 (1114)
Q Consensus 522 l~~~~p~~~~~l~~L~~L~Ls~N~l~ 547 (1114)
|++..+..|..+++|+.|+|++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 44333333444444444444444433
No 400
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.6e-13 Score=156.10 Aligned_cols=136 Identities=20% Similarity=0.214 Sum_probs=68.2
Q ss_pred CcceEEeeccceeeccCCchh-hccccccEeecccccCCCCccccc-----cccccCcEEEecCceeccC----CCcccc
Q 001253 462 KSLVQLRLGGNSFTGSFPSDL-CKLANLSTVELDQNQFSGPIPTEI-----GNCNALQRLHLSDNYFTGE----LPREVG 531 (1114)
Q Consensus 462 ~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~ 531 (1114)
++|++|+|++|.++......+ ..+.+|++|+|++|+|+......+ ...++|++|+|++|.|+.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555554433222222 123455555555555543222222 1235566666666665431 233334
Q ss_pred CCCCcceeeccccccccc----ccccccccccceEEECccccccCC----CchhhhhcccCCeeeccCccCCCc
Q 001253 532 NLSNLVTFNVSSNFLTGR----IPLEIFSCKMLQRLDLSWNKFVGA----LPREIGSLFQLELLKLSENELSGS 597 (1114)
Q Consensus 532 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~ 597 (1114)
..++|++|+|++|.|++. ++..+..+++|+.|+|++|.|+.. ++..+...++|++|+|++|.|+..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 555666666666666532 233444555666666666666542 223334456666666666666643
No 401
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=1.2e-13 Score=157.33 Aligned_cols=144 Identities=18% Similarity=0.155 Sum_probs=93.6
Q ss_pred CccceeeeccCCccCCcCccc-ccCCcceEEeeccceeeccCCchhh-----ccccccEeecccccCCC----Ccccccc
Q 001253 438 TSLIFLNLETNKLTGSIPTGV-TRCKSLVQLRLGGNSFTGSFPSDLC-----KLANLSTVELDQNQFSG----PIPTEIG 507 (1114)
Q Consensus 438 ~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~----~~p~~~~ 507 (1114)
++|++|+|++|.++......+ ..+++|+.|+|++|.+++.....++ ..++|++|+|++|.|+. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 456666666666653222222 2345677777777777644444442 34668888888887763 2344456
Q ss_pred ccccCcEEEecCceeccC----CCccccCCCCcceeeccccccccc----ccccccccccceEEECccccccCCCchhhh
Q 001253 508 NCNALQRLHLSDNYFTGE----LPREVGNLSNLVTFNVSSNFLTGR----IPLEIFSCKMLQRLDLSWNKFVGALPREIG 579 (1114)
Q Consensus 508 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 579 (1114)
.+++|++|||++|.|++. ++..+...++|+.|+|++|.|+.. ++..+..+++|+.|||++|.|+......+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 677888888888888743 345566777888889998888743 334444578899999999998865555554
Q ss_pred hc
Q 001253 580 SL 581 (1114)
Q Consensus 580 ~l 581 (1114)
.+
T Consensus 261 ~~ 262 (372)
T 3un9_A 261 DL 262 (372)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 402
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=2.3e-12 Score=146.21 Aligned_cols=108 Identities=22% Similarity=0.158 Sum_probs=71.6
Q ss_pred eeccCc-cCCCcccccccccccccccccCC-CcCCCCCChhhcCcchhhHHhhcccccccccCCccccchhhhHhhhccC
Q 001253 587 LKLSEN-ELSGSIPVQIGNLSRLTELQMGG-NSFSGGIPAELGSLSSLQIALNLSYNNLSGLIPPELGNLILLEYLLLNN 664 (1114)
Q Consensus 587 L~L~~N-~l~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~l~~L~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 664 (1114)
++++++ +|+ .+|. +..+++|+.|+|++ |+|++..|..|..+++|+ .|+|++|+|++..|..|++|++|++|||++
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELR-NLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCS-EEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCC-EEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455554 555 3455 55666666666664 666655556666666666 566666666666666777777777777777
Q ss_pred cccccCCCCccccccccceEEeccCcccCCCCCc
Q 001253 665 NHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPSS 698 (1114)
Q Consensus 665 N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~~ 698 (1114)
|+|++.+|..|..++ |+.|+|++|+|.+.+...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~ 122 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCALR 122 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCccH
Confidence 777766666666665 788888888888766543
No 403
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.15 E-value=7e-10 Score=127.94 Aligned_cols=334 Identities=12% Similarity=0.095 Sum_probs=168.9
Q ss_pred CCccccc-cccceeccccccccccCCCCCCCCccceeeccccccCCCCcccccccccccEEEecCCcccCcccccccccc
Q 001253 192 PTLGNLK-RLKSFRAGQNLISGSLPSEIGGCESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQLSGVIPKELGNCT 270 (1114)
Q Consensus 192 ~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 270 (1114)
.+|.+++ .|+.+.+..+ ++.+...+|.++++|+.+.++.|.-+ .++.+-..+|.++.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~---------------------~l~~Ig~~aF~~c~ 114 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPS---------------------CVKKIGRQAFMFCS 114 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCC---------------------CCCEECTTTTTTCT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCC---------------------eeeEechhhchhcc
Confidence 3455442 3555555433 33344455555555555555444210 13323334566666
Q ss_pred ccchhhcccccccCCchhhhcCCCccceeeecccccccccCccccccccccccccccccCCCCCchhhhcccccceeecc
Q 001253 271 SLETLALYDNKQVGQLPKELGSIGSLKYLYIYRNELNGTIPREIGKLSSALEIDFSENSLIGEIPVELSKILGLELLYLF 350 (1114)
Q Consensus 271 ~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~~~~l~~l~~L~~L~L~ 350 (1114)
+|+.+.+..+ +.......|..+.+|+.+.+..+. .......+..+.+|+.+.+..+ +......+|.. .+|+.+.+.
T Consensus 115 ~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip 190 (394)
T 4gt6_A 115 ELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIP 190 (394)
T ss_dssp TCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEEC
T ss_pred cceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEEC
Confidence 6666665543 233334445666666666665332 2122334555555555555433 22122222322 345555554
Q ss_pred cccccCcccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcCccceEEEeecccccCCC
Q 001253 351 ENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAYSQLWVVDLSDNHLTGKI 430 (1114)
Q Consensus 351 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 430 (1114)
.+- +.+...+|..+.+++......+.........+........-. ..+.....+..+.+. +.++...
T Consensus 191 ~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ip-~~v~~i~ 257 (394)
T 4gt6_A 191 AKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYAL-----------IRYPSQREDPAFKIP-NGVARIE 257 (394)
T ss_dssp TTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE-----------EECCTTCCCSEEECC-TTEEEEC
T ss_pred Ccc-cccccchhhhccccceecccccccccccceeecccccccccc-----------cccccccccceEEcC-CcceEcc
Confidence 332 223445555566666665554443311111111000000000 000111122223322 2233234
Q ss_pred CccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccc
Q 001253 431 PRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCN 510 (1114)
Q Consensus 431 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 510 (1114)
...|..+..|+.+.+..+... .....|.++++|+.+.+. +.++......|.++.+|+.+++..+ ++.+-...|.+|.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 456666677777777655443 445667778888888875 4455455667888888888888754 5545567788888
Q ss_pred cCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECcccccc
Q 001253 511 ALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFV 571 (1114)
Q Consensus 511 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 571 (1114)
+|+.+.+..+ ++.+-..+|.++++|+.+++.+|.... ..+..+.+|+.+.+..|.+.
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 8888888765 665667788888888888888876541 35667788888888776553
No 404
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=5.7e-11 Score=134.68 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=42.0
Q ss_pred hhccccccEeeccc-ccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccc
Q 001253 482 LCKLANLSTVELDQ-NQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKML 560 (1114)
Q Consensus 482 ~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 560 (1114)
+..+++|++|+|++ |+|++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++ +|..++....|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSL 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTCSCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcccCCc
Confidence 44444444444443 44444444445555555555555555554444445555555555555555542 22222222225
Q ss_pred eEEECcccccc
Q 001253 561 QRLDLSWNKFV 571 (1114)
Q Consensus 561 ~~L~Ls~N~l~ 571 (1114)
+.|+|++|.+.
T Consensus 106 ~~l~l~~N~~~ 116 (347)
T 2ifg_A 106 QELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCC
T ss_pred eEEEeeCCCcc
Confidence 55555555554
No 405
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.13 E-value=1.6e-10 Score=125.39 Aligned_cols=143 Identities=17% Similarity=0.085 Sum_probs=112.5
Q ss_pred cCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-CCceeeEEeEEEecCceEEEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-HRNIVKLYGFCYHQGSNLLMY 887 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ 887 (1114)
+.|++...++.|+.+.||++... ++.+++|+........ ...+.+|+.+++.+. +..+.++++++.+.+..|+||
T Consensus 14 ~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~---~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~ 89 (263)
T 3tm0_A 14 EKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGT---TYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLM 89 (263)
T ss_dssp TTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTS---TTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEE
T ss_pred ccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCC---HHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEE
Confidence 56887888898999999999865 7899999987542221 224778999988884 677889999999888999999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---------------------------------------
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHD--------------------------------------- 928 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~--------------------------------------- 928 (1114)
||++|.++.+.... ......++.+++++++.||+.
T Consensus 90 e~i~G~~l~~~~~~------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (263)
T 3tm0_A 90 SEADGVLCSEEYED------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTP 163 (263)
T ss_dssp ECCSSEEHHHHCCT------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCS
T ss_pred EecCCeehhhccCC------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccccc
Confidence 99999999876421 122346788999999999981
Q ss_pred -----------------CCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 929 -----------------CKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 929 -----------------~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
..+.++|+|+++.||+++++..+.|+||+.+..
T Consensus 164 ~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~ 213 (263)
T 3tm0_A 164 FKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR 213 (263)
T ss_dssp SSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred CCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence 014699999999999998765667999998764
No 406
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.13 E-value=1.2e-09 Score=125.85 Aligned_cols=335 Identities=14% Similarity=0.091 Sum_probs=153.3
Q ss_pred ccCcccccccccc-ccchhhcccccccCCchhhhcCCCccceeeecccc---cccccCccccccccccccccccccCCCC
Q 001253 258 LSGVIPKELGNCT-SLETLALYDNKQVGQLPKELGSIGSLKYLYIYRNE---LNGTIPREIGKLSSALEIDFSENSLIGE 333 (1114)
Q Consensus 258 l~~~~p~~l~~l~-~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 333 (1114)
++.+-..+|.++. .|+.+.+.++ +......+|.++++|+.+.+..|. ++..-..+|..+.+|+.+.+..+ ++..
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 3334445677774 5888888754 555566778888888888887764 33223345556666666555443 2323
Q ss_pred CchhhhcccccceeecccccccCcccccccccccCCEEEcccccccccccCccccccceeeeeccCCcccCCCCCCCCcC
Q 001253 334 IPVELSKILGLELLYLFENKLTGVIPVELTTLKNLTKLDLSINSLTGTIPLGFQYLTNLIMLQLFDNSLVGGIPQRLGAY 413 (1114)
Q Consensus 334 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 413 (1114)
....|....+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++.....+|.+ .+|+.+.+..+-. ......|...
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c 204 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSEC 204 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTC
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhc
Confidence 3344555555555555432 23344445555555555555443 23233333432 3344444433211 1222333344
Q ss_pred ccceEEEeecccccCCCCccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeec
Q 001253 414 SQLWVVDLSDNHLTGKIPRHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVEL 493 (1114)
Q Consensus 414 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 493 (1114)
..+.......+.... +...+..... ........+.....+..+.+. +.++..-..+|..+..|+.+.+
T Consensus 205 ~~l~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~l 272 (394)
T 4gt6_A 205 FALSTITSDSESYPA-IDNVLYEKSA----------NGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKM 272 (394)
T ss_dssp TTCCEEEECCSSSCB-SSSCEEEECT----------TSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEEC
T ss_pred cccceeccccccccc-ccceeecccc----------cccccccccccccccceEEcC-CcceEcccceeeecccccEEec
Confidence 444444433332221 1111000000 000000001111222222222 2233233445556666666666
Q ss_pred ccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccceEEECccccccCC
Q 001253 494 DQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKMLQRLDLSWNKFVGA 573 (1114)
Q Consensus 494 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 573 (1114)
..+..+ +....|.++++|+.+.+.. .++.+...+|.++.+|+.++|..+ ++..-...|.+|.+|+.+.+..+ ++..
T Consensus 273 p~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I 348 (394)
T 4gt6_A 273 PDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKI 348 (394)
T ss_dssp CTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBC
T ss_pred ccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEE
Confidence 544333 4445556666666666643 344344555666666666666543 33222334455666666666433 4433
Q ss_pred CchhhhhcccCCeeeccCccCCCcccccccccccccccccCCCc
Q 001253 574 LPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGNS 617 (1114)
Q Consensus 574 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~ 617 (1114)
-..+|.++.+|+.+++.+|.... ..+.....|+.+.+..|.
T Consensus 349 ~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 349 PESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred hHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 34555666666666665554321 234444555555554443
No 407
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=98.99 E-value=7e-10 Score=120.11 Aligned_cols=129 Identities=17% Similarity=0.079 Sum_probs=97.4
Q ss_pred cccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCc--eeeEEeEEEecCceEEEEecCCCCCH
Q 001253 818 GRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRN--IVKLYGFCYHQGSNLLMYEYMARGSL 895 (1114)
Q Consensus 818 G~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~E~~~~gsL 895 (1114)
+.|..+.||++...+|+.+++|+..... ...+..|+.+++.+++.+ +.+++++...++..++||||++|.++
T Consensus 29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~~------~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l 102 (264)
T 1nd4_A 29 IGCSDAAVFRLSAQGRPVLFVKTDLSGA------LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL 102 (264)
T ss_dssp CTTSSCEEEEEECTTSCCEEEEEECSCT------TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred cCCCCceEEEEecCCCCeEEEEeCCccc------chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCccc
Confidence 4566799999987778889999976541 134678888888885434 55688888887888999999999888
Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC----------------------------------------------
Q 001253 896 GELLHGASSTLDWQTRFMIALGAAEGLSYLHHDC---------------------------------------------- 929 (1114)
Q Consensus 896 ~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~---------------------------------------------- 929 (1114)
. .. ..+ ...++.++++.++.+|+..
T Consensus 103 ~--~~----~~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (264)
T 1nd4_A 103 L--SS----HLA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFAR 173 (264)
T ss_dssp T--TS----CCC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHH
T ss_pred C--cC----cCC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHH
Confidence 4 22 112 2356778888888888741
Q ss_pred ---------CCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 930 ---------KPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 930 ---------~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
.+.++|+|++|.||++++++.+.|+|||.+..
T Consensus 174 l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 174 LKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp HHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred HHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 12399999999999998776677999999874
No 408
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.88 E-value=4.7e-09 Score=119.41 Aligned_cols=143 Identities=15% Similarity=0.218 Sum_probs=107.4
Q ss_pred CCceecccCCeEEEEEEeCCCcEEEEEEec--ccCCCChhhHHHHHHHHHHHhcCC--CCceeeEEeEEEec---CceEE
Q 001253 813 ERFVIGRGACGTVYRAVLRTGHTVAVKKLA--SNREGNNNVDNSFRAEILTLGKIR--HRNIVKLYGFCYHQ---GSNLL 885 (1114)
Q Consensus 813 ~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~--~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~---~~~~l 885 (1114)
..+.++.|.++.||+.... +..+++|+.. ..... .....+.+|+.+++.+. +..+++++.++.+. +..|+
T Consensus 42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~--~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~ 118 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLL--PSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFY 118 (359)
T ss_dssp EEEECCC-CCSCEEEEECS-SCEEEEECCCC------------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEE
T ss_pred eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCC--CcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEE
Confidence 3457899999999999876 4688899876 33211 11345778999998886 45688888888776 45899
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC------------------------------------
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDC------------------------------------ 929 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------------------------------------ 929 (1114)
||||++|..+.+.. ...++..++..++.++++.|+.||+..
T Consensus 119 vme~v~G~~l~~~~---~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (359)
T 3dxp_A 119 IMEFVSGRVLWDQS---LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIP 195 (359)
T ss_dssp EEECCCCBCCCCTT---CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCH
T ss_pred EEEecCCeecCCCc---cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCCh
Confidence 99999998775422 234678888999999999999999831
Q ss_pred -------------------CCCeEecCCCCCCeEECCCCC--eEEeeccCcee
Q 001253 930 -------------------KPRIFHRDIKSNNILLDDKFE--AHVGDFGLAKV 961 (1114)
Q Consensus 930 -------------------~~~ivH~Dlk~~Nill~~~~~--~kl~DfG~a~~ 961 (1114)
.+.++|+|+++.||+++.++. +.|+||+.+..
T Consensus 196 ~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 196 AMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 257999999999999997753 68999999875
No 409
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.86 E-value=4.8e-08 Score=111.90 Aligned_cols=109 Identities=16% Similarity=0.119 Sum_probs=57.4
Q ss_pred cccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhhccccccEeecccccCCCCccccccccccC
Q 001253 433 HICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLCKLANLSTVELDQNQFSGPIPTEIGNCNAL 512 (1114)
Q Consensus 433 ~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 512 (1114)
.|.....|+.+.+..+ ++......|..+.+|+.+.+..+ +.......|.++.+|+.+.+.++.++.+....|.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3344444444444433 33233344555555555555433 332334455556666666666665554445566666666
Q ss_pred cEEEecCceeccCCCccccCCCCcceeecccc
Q 001253 513 QRLHLSDNYFTGELPREVGNLSNLVTFNVSSN 544 (1114)
Q Consensus 513 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 544 (1114)
+.++|..+ ++.+-..+|.++++|+.+.+..+
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 66666544 44444556666666666666544
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=1.8e-09 Score=121.62 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCCcceeeccccccccccccccc---ccccceEEECccccccCC----CchhhhhcccCCeeeccCccCC
Q 001253 533 LSNLVTFNVSSNFLTGRIPLEIF---SCKMLQRLDLSWNKFVGA----LPREIGSLFQLELLKLSENELS 595 (1114)
Q Consensus 533 l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 595 (1114)
+++|+.|+|++|.+.+..+..+. .+++|+.|+|+.|.+.+. ++..+..+++|+.|+|++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 44455555555544422222221 244455555555544432 1222233344444444444444
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=2.4e-09 Score=120.52 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=96.4
Q ss_pred ccccccCccceeeeccCCccCCcCcccccCCcceEEeeccceeeccCCchhh--ccccccEeeccc--ccCCCC-----c
Q 001253 432 RHICRNTSLIFLNLETNKLTGSIPTGVTRCKSLVQLRLGGNSFTGSFPSDLC--KLANLSTVELDQ--NQFSGP-----I 502 (1114)
Q Consensus 432 ~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~--N~l~~~-----~ 502 (1114)
..+..+|+|+.|+|++|.-. .++. + .+++|+.|+|..|.+.......++ .+++|+.|+|+. |...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 33444566666666665211 1222 2 266777777777766544333443 567777777753 221111 1
Q ss_pred cccc--cccccCcEEEecCceeccCCCccc---cCCCCcceeeccccccccc----ccccccccccceEEECccccccCC
Q 001253 503 PTEI--GNCNALQRLHLSDNYFTGELPREV---GNLSNLVTFNVSSNFLTGR----IPLEIFSCKMLQRLDLSWNKFVGA 573 (1114)
Q Consensus 503 p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~ 573 (1114)
...+ ..+++|+.|+|++|.+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 1122 257899999999998875433333 2478899999999999863 344445689999999999988754
Q ss_pred CchhhhhcccCCeeeccCcc
Q 001253 574 LPREIGSLFQLELLKLSENE 593 (1114)
Q Consensus 574 ~p~~~~~l~~L~~L~L~~N~ 593 (1114)
.-..+...- ...+++++|+
T Consensus 323 ~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC-CSEEECCSBC
T ss_pred HHHHHHHHc-CCEEEecCCc
Confidence 333343311 3557777776
No 412
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.79 E-value=2.5e-09 Score=118.56 Aligned_cols=185 Identities=21% Similarity=0.163 Sum_probs=122.8
Q ss_pred CceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-CCc--eeeEEeEEEecC---ceEEEE
Q 001253 814 RFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-HRN--IVKLYGFCYHQG---SNLLMY 887 (1114)
Q Consensus 814 ~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~ 887 (1114)
.+.++.|....||++. +.+++|+.... .....+.+|+.+++.+. +.. +.+++......+ ..|+||
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~-----~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm 95 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS-----RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGF 95 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH-----HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEE
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc-----chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEE
Confidence 3568999999999863 56899986432 23456888999998873 322 444544443333 348999
Q ss_pred ecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---------------------------------------
Q 001253 888 EYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHD--------------------------------------- 928 (1114)
Q Consensus 888 E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~--------------------------------------- 928 (1114)
||++|.++.+... ..++..++..++.++++.++.||+.
T Consensus 96 ~~i~G~~l~~~~~---~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (304)
T 3sg8_A 96 TKIKGVPLTPLLL---NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKK 172 (304)
T ss_dssp ECCCCEECCHHHH---HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred cccCCeECCcccc---ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHH
Confidence 9999988865332 2467778888888999988888861
Q ss_pred ----------------CCCCeEecCCCCCCeEECC--CCCeEEeeccCceecCCCCCCcccc--------------cccc
Q 001253 929 ----------------CKPRIFHRDIKSNNILLDD--KFEAHVGDFGLAKVIDMPQSKSMSA--------------IAGS 976 (1114)
Q Consensus 929 ----------------~~~~ivH~Dlk~~Nill~~--~~~~kl~DfG~a~~~~~~~~~~~~~--------------~~g~ 976 (1114)
..+.++|+|+++.||++++ ...+.++||+.+...+. ....... +...
T Consensus 173 l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~-~~Dl~~~~~~~~~~~~~~~~~~l~~ 251 (304)
T 3sg8_A 173 VDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDP-DNDFISLMEDDEEYGMEFVSKILNH 251 (304)
T ss_dssp HHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECT-THHHHTTCCTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCCh-HHHHHHHHhhccccCHHHHHHHHHH
Confidence 1246899999999999998 45678999999876431 1100000 0000
Q ss_pred ccccC-ccccccCCCCcccchHHHHHHHHHHHhCCCCC
Q 001253 977 YGYIA-PEYAYTMKVTEKCDIYSYGVVLLELLTGRAPV 1013 (1114)
Q Consensus 977 ~~y~a-PE~~~~~~~~~~~DvwslGvil~el~tg~~p~ 1013 (1114)
+++.. |+.... .....+.|++|.++|++.+|+.+|
T Consensus 252 Y~~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~ 287 (304)
T 3sg8_A 252 YKHKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDW 287 (304)
T ss_dssp HTCSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHH
Confidence 11112 222111 122368999999999999998765
No 413
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.75 E-value=2.8e-07 Score=105.56 Aligned_cols=132 Identities=15% Similarity=0.109 Sum_probs=63.3
Q ss_pred hhhccccccEeecccccCCCCccccccccccCcEEEecCceeccCCCccccCCCCcceeecccccccccccccccccccc
Q 001253 481 DLCKLANLSTVELDQNQFSGPIPTEIGNCNALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFLTGRIPLEIFSCKML 560 (1114)
Q Consensus 481 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 560 (1114)
.+....+|+.+.+..+ ++.+....|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++..-...+..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3444444555544333 22233344455555555555444 33334445555555555555433 321222334445555
Q ss_pred eEEECccccccCCCchhhhhcccCCeeeccCccCCCcccccccccccccccccCCC
Q 001253 561 QRLDLSWNKFVGALPREIGSLFQLELLKLSENELSGSIPVQIGNLSRLTELQMGGN 616 (1114)
Q Consensus 561 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N 616 (1114)
+.+++.++.++......|.++.+|+.+.|..+ ++.+-..+|.++++|+.+.+..+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 55555555555344445555555555555433 44333445666666666655443
No 414
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.56 E-value=1.2e-10 Score=124.03 Aligned_cols=12 Identities=0% Similarity=-0.532 Sum_probs=10.1
Q ss_pred CCccceEEEecC
Q 001253 63 PCGWIGVNCTTN 74 (1114)
Q Consensus 63 ~C~w~gv~C~~~ 74 (1114)
.|.|.|+.|+.+
T Consensus 77 l~~~~g~i~~~~ 88 (267)
T 3rw6_A 77 LKAVNYKILDRE 88 (267)
T ss_dssp HHHTTSSCBCTT
T ss_pred HHhcCcEEECCC
Confidence 489999999865
No 415
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.47 E-value=4.5e-07 Score=101.01 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=102.1
Q ss_pred CCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCC----CceeeEEeEEEecCceEE
Q 001253 810 NFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRH----RNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 810 ~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~l~~~~~~~~~~~l 885 (1114)
.+...+.++.|....||+. |+.+++|+.... .....+.+|..+++.+.+ ..+.+++++ +..++
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~-----~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~l 104 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD-----SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFN 104 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH-----HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH-----HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEE
Confidence 5556678999999999998 677899986432 223458889988888865 234455544 56789
Q ss_pred EEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCC------------------------------------
Q 001253 886 MYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDC------------------------------------ 929 (1114)
Q Consensus 886 v~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~------------------------------------ 929 (1114)
||||++|.++.+... ..++..++..++.++++.++.||+..
T Consensus 105 vme~i~G~~l~~~~~---~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (320)
T 3r70_A 105 IMKYIKGERITYEQY---HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLL 181 (320)
T ss_dssp EEECCCCBCCCHHHH---TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEeecCCcccccccc---ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhcccc
Confidence 999999988864332 24566777778888888888888532
Q ss_pred ------------------------CCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 930 ------------------------KPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 930 ------------------------~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
.+.++|+|++|.||+++.+..+.++||+.+...
T Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~ 238 (320)
T 3r70_A 182 TDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVG 238 (320)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEE
T ss_pred cccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccC
Confidence 124599999999999999766799999998754
No 416
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=8.1e-08 Score=102.26 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=8.1
Q ss_pred cceEEECccccccCCC
Q 001253 559 MLQRLDLSWNKFVGAL 574 (1114)
Q Consensus 559 ~L~~L~Ls~N~l~~~~ 574 (1114)
+|+.|+|++|.+.+.+
T Consensus 221 ~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTF 236 (267)
T ss_dssp CCSEEECTTSTTGGGC
T ss_pred CcceEEccCCcCcccc
Confidence 4555555555555433
No 417
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.28 E-value=3e-06 Score=91.80 Aligned_cols=135 Identities=18% Similarity=0.151 Sum_probs=98.4
Q ss_pred eecccCCe-EEEEEEeC-CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-CCceeeEEeEEEecCceEEEEecCCC
Q 001253 816 VIGRGACG-TVYRAVLR-TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-HRNIVKLYGFCYHQGSNLLMYEYMAR 892 (1114)
Q Consensus 816 ~lG~G~~g-~Vy~~~~~-~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~E~~~~ 892 (1114)
.+..|..| .||+.... ++..+++|+-... ....+.+|...++.+. +--+.++++++.+.+..++|||+++|
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~------~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G 104 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS------VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPG 104 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH------HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCS
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC------CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCC
Confidence 45556665 69998865 4678999986532 2456788998888774 33477888899999999999999999
Q ss_pred CCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC--------------------------------------------
Q 001253 893 GSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHD-------------------------------------------- 928 (1114)
Q Consensus 893 gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~-------------------------------------------- 928 (1114)
.++.+..... ......++.++++.++.||+.
T Consensus 105 ~~~~~~~~~~-----~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (272)
T 4gkh_A 105 KTAFQVLEEY-----PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQV 179 (272)
T ss_dssp EEHHHHHHHC-----GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHH
T ss_pred ccccccccCC-----HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHH
Confidence 8887765421 122344566666777777652
Q ss_pred -----------CCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 929 -----------CKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 929 -----------~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
..+.++|+|+.+.||++++++.+-|+||+.+..
T Consensus 180 ~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 180 WKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp HHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred HHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 012489999999999999887778999998875
No 418
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=1.6e-07 Score=95.27 Aligned_cols=14 Identities=7% Similarity=-0.128 Sum_probs=7.1
Q ss_pred cccccccccCCCcC
Q 001253 605 LSRLTELQMGGNSF 618 (1114)
Q Consensus 605 l~~L~~L~ls~N~l 618 (1114)
.++|++|+|++|.+
T Consensus 150 n~~L~~L~L~~n~i 163 (185)
T 1io0_A 150 NTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCCSSH
T ss_pred CCCcCEEeccCCCC
Confidence 34455555555544
No 419
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=1.2e-07 Score=96.17 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=67.5
Q ss_pred chhhccccccEeecccc-cCCCC----ccccccccccCcEEEecCceeccC----CCccccCCCCcceeeccccccccc-
Q 001253 480 SDLCKLANLSTVELDQN-QFSGP----IPTEIGNCNALQRLHLSDNYFTGE----LPREVGNLSNLVTFNVSSNFLTGR- 549 (1114)
Q Consensus 480 ~~~~~l~~L~~L~L~~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~- 549 (1114)
..+...+.|++|+|++| .|... +...+...++|++|+|++|.|... +...+...++|++|+|++|.|+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34555667777777777 76532 233445566777777777776532 223344445677777777776632
Q ss_pred ---ccccccccccceEEEC--ccccccCCC----chhhhhcccCCeeeccCccCC
Q 001253 550 ---IPLEIFSCKMLQRLDL--SWNKFVGAL----PREIGSLFQLELLKLSENELS 595 (1114)
Q Consensus 550 ---~p~~~~~l~~L~~L~L--s~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~ 595 (1114)
+...+...+.|+.|+| ++|.+.... ...+...+.|++|+|++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3344455566777777 666665432 223334466667777666664
No 420
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.26 E-value=6.1e-06 Score=89.85 Aligned_cols=141 Identities=23% Similarity=0.260 Sum_probs=93.0
Q ss_pred cCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCC---ceeeEEeEEEecCceEEEEe
Q 001253 812 DERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHR---NIVKLYGFCYHQGSNLLMYE 888 (1114)
Q Consensus 812 ~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lv~E 888 (1114)
...+.||.|.++.||+++..+|+.++||+....... ....+..|+..++.+++. .+++++++. ..++|||
T Consensus 18 ~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~---~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme 90 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPA---LDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAME 90 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCC---CTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEE
T ss_pred cceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcc---hhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEE
Confidence 345679999999999999888999999996543221 134588999999999764 577777753 4699999
Q ss_pred cCCCCCHHH--------H---hccCCC--------------------CCCHHHHHH--------------------HHHH
Q 001253 889 YMARGSLGE--------L---LHGASS--------------------TLDWQTRFM--------------------IALG 917 (1114)
Q Consensus 889 ~~~~gsL~~--------~---l~~~~~--------------------~l~~~~~~~--------------------i~~~ 917 (1114)
|++|+.+.. . +|.... .-+|..... ....
T Consensus 91 ~l~g~~~~~~~~~~lg~~LA~LH~~~~~~fG~~~~~~~G~~~q~~~w~~~W~~f~~~~rl~~~l~~a~~~~~~~~~~~~~ 170 (288)
T 3d1u_A 91 WVDERPPTPEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGDVRL 170 (288)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHTCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHHHHHHHTTSSCHHHHHH
T ss_pred ecccCCCChHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 999987431 1 221110 013433211 0111
Q ss_pred HHHHHHHHH----hCCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 918 AAEGLSYLH----HDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 918 i~~~L~~LH----~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
+-+.++.+. ....+.++|+|+.+.||+++.+ .+.++|| .+..
T Consensus 171 ~~~l~~~l~~~l~~~~~~~l~HgD~~~~N~l~~~~-~~~~iD~-~~~~ 216 (288)
T 3d1u_A 171 VEKVLDALDHLAGDPEPPARIHGDLWNGNVLWQDD-GAVVIDP-AAHG 216 (288)
T ss_dssp HHHHHHTHHHHTCSCCCCEEECSCCSGGGEEEETT-EEEECSC-CCEE
T ss_pred HHHHHHHHHHHhcCCCCCcceECCCCcCcEEEeCC-CeEEEcC-CcCC
Confidence 112222232 2235789999999999999884 5889999 6653
No 421
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.20 E-value=6.3e-06 Score=90.91 Aligned_cols=136 Identities=21% Similarity=0.174 Sum_probs=96.0
Q ss_pred CceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCC---ceeeEEeEEE-ecCceEEEEec
Q 001253 814 RFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHR---NIVKLYGFCY-HQGSNLLMYEY 889 (1114)
Q Consensus 814 ~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~E~ 889 (1114)
.+.++.|....||+. |+.+++|+... ......+.+|+.+++.+.+. .+.+++.++. ..+..++||||
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~~-----~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~ 94 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPKS-----QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRK 94 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESS-----HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEEC
T ss_pred eeecCCCcceeEEEE----CCEEEEEecCC-----chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEec
Confidence 346888999999998 67789998532 12356788999999998642 3566666664 34567899999
Q ss_pred CCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC-----------------------------------------
Q 001253 890 MARGSLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHD----------------------------------------- 928 (1114)
Q Consensus 890 ~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~----------------------------------------- 928 (1114)
++|..+.+..- ..++..++..++.++++.|+.||+.
T Consensus 95 i~G~~l~~~~~---~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (306)
T 3tdw_A 95 VQGQILGEDGM---AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDY 171 (306)
T ss_dssp CCSEECHHHHH---TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred cCCeECchhhh---hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 99988776321 1234455555555555555555542
Q ss_pred ----------------CCCCeEecCCCCCCeEECC---CCC-eEEeeccCcee
Q 001253 929 ----------------CKPRIFHRDIKSNNILLDD---KFE-AHVGDFGLAKV 961 (1114)
Q Consensus 929 ----------------~~~~ivH~Dlk~~Nill~~---~~~-~kl~DfG~a~~ 961 (1114)
..+.++|+|+++.||+++. ++. +.|+||+.+..
T Consensus 172 l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 172 LTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 2336799999999999987 455 48999998875
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.05 E-value=1.1e-05 Score=91.13 Aligned_cols=141 Identities=14% Similarity=0.162 Sum_probs=89.7
Q ss_pred CCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCC--ceeeEEeEEEec-CceEEEEec
Q 001253 813 ERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHR--NIVKLYGFCYHQ-GSNLLMYEY 889 (1114)
Q Consensus 813 ~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l~~~~~~~-~~~~lv~E~ 889 (1114)
..+.++.|....+|+.+. +|+.+++|+.... ..+..|+.+++.+... .+.+++.++... +..|+||||
T Consensus 45 ~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~--------~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~ 115 (362)
T 3ovc_A 45 DLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA--------DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRR 115 (362)
T ss_dssp EEEEEEECSSEEEEEEEE-TTEEEEEEEESCC--------HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEEC
T ss_pred eEEECCCCCcceEEEEEE-CCcEEEEEeCCch--------hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEe
Confidence 345789999999999886 4788999987432 2477888888887643 356677776654 568999999
Q ss_pred CCCCCHHHH------------------hccCC--C--C------------CCHHHHH---------------------HH
Q 001253 890 MARGSLGEL------------------LHGAS--S--T------------LDWQTRF---------------------MI 914 (1114)
Q Consensus 890 ~~~gsL~~~------------------l~~~~--~--~------------l~~~~~~---------------------~i 914 (1114)
++|.++.+. ++... . . -+|.... ..
T Consensus 116 l~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~ 195 (362)
T 3ovc_A 116 AQGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASV 195 (362)
T ss_dssp CCSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHH
T ss_pred cCCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 998655421 11100 0 0 0111110 11
Q ss_pred HHHHHHHHHHHHhC-CCCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 915 ALGAAEGLSYLHHD-CKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 915 ~~~i~~~L~~LH~~-~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
...+...++++... ..+.++|+|+++.||++++++.+.|+||+.+...
T Consensus 196 ~~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~g 244 (362)
T 3ovc_A 196 AQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG 244 (362)
T ss_dssp HHHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEE
T ss_pred hHHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccC
Confidence 11122222233211 1257899999999999987777889999998764
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.04 E-value=4.7e-06 Score=94.34 Aligned_cols=84 Identities=5% Similarity=0.034 Sum_probs=55.2
Q ss_pred Ccee-cccCCeEEEEEEeC-------CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-C--CceeeEEeEEEec--
Q 001253 814 RFVI-GRGACGTVYRAVLR-------TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-H--RNIVKLYGFCYHQ-- 880 (1114)
Q Consensus 814 ~~~l-G~G~~g~Vy~~~~~-------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~-- 880 (1114)
.+.| +.|....+|+.... +++.+++|+..............+.+|+.+++.+. + -.+.+++.++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3467 88999999998764 26789999865432000000123667888887774 2 3567777777655
Q ss_pred -CceEEEEecCCCCCHHH
Q 001253 881 -GSNLLMYEYMARGSLGE 897 (1114)
Q Consensus 881 -~~~~lv~E~~~~gsL~~ 897 (1114)
+..++||||++|..+.+
T Consensus 105 ~g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp TSSCEEEEECCCCBCCCB
T ss_pred cCCceEEEEecCCCChhh
Confidence 35689999999876543
No 424
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.75 E-value=9.7e-05 Score=84.75 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=49.2
Q ss_pred CceecccCCeEEEEEEeC-CCcEEEEEEecccCC----CChhhHHHHHHHHHHHhcCCC--C-ceeeEEeEEEecCceEE
Q 001253 814 RFVIGRGACGTVYRAVLR-TGHTVAVKKLASNRE----GNNNVDNSFRAEILTLGKIRH--R-NIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 814 ~~~lG~G~~g~Vy~~~~~-~g~~vavK~~~~~~~----~~~~~~~~~~~E~~~l~~l~h--~-niv~l~~~~~~~~~~~l 885 (1114)
.+.||.|..+.||+++.. +++.|+||....... ........+..|..+++.+.. | .+.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 357999999999999865 468999998754321 000112345678888876632 3 34455543 4556789
Q ss_pred EEecCCCC
Q 001253 886 MYEYMARG 893 (1114)
Q Consensus 886 v~E~~~~g 893 (1114)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999874
No 425
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.65 E-value=0.00015 Score=81.37 Aligned_cols=139 Identities=16% Similarity=0.244 Sum_probs=79.3
Q ss_pred ceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-----CCceeeEE-e--EEEecCceEEE
Q 001253 815 FVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-----HRNIVKLY-G--FCYHQGSNLLM 886 (1114)
Q Consensus 815 ~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l~-~--~~~~~~~~~lv 886 (1114)
+.|+.|..+.||++...+| .+++|+.... ...+..|+.+++.+. .|.++... | +....+..++|
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~-------~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l 109 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP-------EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVV 109 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC-------HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEE
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC-------HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEE
Confidence 3466678899999987654 5899998652 122334455444442 34443310 0 12346678999
Q ss_pred EecCCCCCHH-----H------H---hcc----C--C-------CCCCHHHHH---------------------------
Q 001253 887 YEYMARGSLG-----E------L---LHG----A--S-------STLDWQTRF--------------------------- 912 (1114)
Q Consensus 887 ~E~~~~gsL~-----~------~---l~~----~--~-------~~l~~~~~~--------------------------- 912 (1114)
|||++|..+. + . +|. . . ....|....
T Consensus 110 ~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 189 (346)
T 2q83_A 110 YDWIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYL 189 (346)
T ss_dssp EECCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred EEeecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 9999986542 1 1 111 1 0 011232110
Q ss_pred ----HHHHHHHHHHHHHHh----------CCCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 913 ----MIALGAAEGLSYLHH----------DCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 913 ----~i~~~i~~~L~~LH~----------~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
.+...+..++++++. ...+.++|+|+++.||+++.++.+.++||+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~ 252 (346)
T 2q83_A 190 QEIDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF 252 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence 111123345666653 1245899999999999998888999999998764
No 426
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.64 E-value=7.1e-05 Score=86.53 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=48.1
Q ss_pred CCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCCCccccccc--cccccCccccccC---CCCcccchHHHHHHHH
Q 001253 930 KPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQSKSMSAIAG--SYGYIAPEYAYTM---KVTEKCDIYSYGVVLL 1004 (1114)
Q Consensus 930 ~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~g--~~~y~aPE~~~~~---~~~~~~DvwslGvil~ 1004 (1114)
.+.++|+|+++.|||++.++ ++++||+.+.... +. ........ ...|++|+..... ......++......+|
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~-p~-~Dla~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGP-MG-FDIGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTW 307 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEEC-HH-HHHHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCc-hH-HHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHH
Confidence 34899999999999999876 9999999988642 11 11111111 1346666554311 1122345567777888
Q ss_pred HHHhC
Q 001253 1005 ELLTG 1009 (1114)
Q Consensus 1005 el~tg 1009 (1114)
+.+.+
T Consensus 308 ~~y~~ 312 (420)
T 2pyw_A 308 NLFNK 312 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 427
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.60 E-value=2.3e-05 Score=77.12 Aligned_cols=84 Identities=13% Similarity=0.127 Sum_probs=48.5
Q ss_pred CccceeeccccccCCCCcccccccccccEEEecCCc-ccCccccccccc----cccchhhccccc-ccCCchhhhcCCCc
Q 001253 222 ESLQYLGLAQNQLSGEIPKEIGMLKYLTDVILWGNQ-LSGVIPKELGNC----TSLETLALYDNK-QVGQLPKELGSIGS 295 (1114)
Q Consensus 222 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-~~~~~p~~~~~l~~ 295 (1114)
..|++|||+++.++...-..+..+++|++|+|++|. |++.--..++.+ ++|++|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356777777776665445556666677777777763 554333344442 356666666653 44444444555666
Q ss_pred cceeeecccc
Q 001253 296 LKYLYIYRNE 305 (1114)
Q Consensus 296 L~~L~L~~n~ 305 (1114)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666553
No 428
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.59 E-value=0.00021 Score=78.28 Aligned_cols=136 Identities=23% Similarity=0.252 Sum_probs=91.8
Q ss_pred CceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC---CCceeeEEeEEEecCceEEEEecC
Q 001253 814 RFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR---HRNIVKLYGFCYHQGSNLLMYEYM 890 (1114)
Q Consensus 814 ~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lv~E~~ 890 (1114)
.+.|+.|....+|+.... +..+++|+.... ....+..|+..++.+. ...+++++.++...+..++||||+
T Consensus 41 ~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~~------~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l 113 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLINDE-VQTVFVKINERS------YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEAL 113 (312)
T ss_dssp EEEECCSSSSEEEEEESS-SCEEEEEEEEGG------GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECC
T ss_pred eEEeCCccceeeeEEEEC-CCeEEEEeCCcc------cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEec
Confidence 457999999999999864 678999987542 1456888988888774 357888888888888899999999
Q ss_pred CCCCHH--------HH---hccCCC---------------------CCCHHHHH---HHHH----------------HHH
Q 001253 891 ARGSLG--------EL---LHGASS---------------------TLDWQTRF---MIAL----------------GAA 919 (1114)
Q Consensus 891 ~~gsL~--------~~---l~~~~~---------------------~l~~~~~~---~i~~----------------~i~ 919 (1114)
++..+. +. ++.... .-+|.... ++.. .++
T Consensus 114 ~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~ 193 (312)
T 3jr1_A 114 NKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIV 193 (312)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHH
T ss_pred cCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 997642 11 222111 12454332 1111 111
Q ss_pred HH-HHHHHh-CCCCCeEecCCCCCCeEECCCCCeEEeecc
Q 001253 920 EG-LSYLHH-DCKPRIFHRDIKSNNILLDDKFEAHVGDFG 957 (1114)
Q Consensus 920 ~~-L~~LH~-~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG 957 (1114)
+. .+.|.. ...+.++|+|+.+.|++++.++ +.|+|++
T Consensus 194 ~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 194 QIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 11 223321 2257899999999999999887 8899974
No 429
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.58 E-value=0.00022 Score=77.68 Aligned_cols=80 Identities=23% Similarity=0.293 Sum_probs=57.1
Q ss_pred cCCcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCC---CceeeEEeEEEecCceEE
Q 001253 809 DNFDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRH---RNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 809 ~~~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~l~~~~~~~~~~~l 885 (1114)
.+...+..+|.|..+.||+.+..+|+.|++|+........ ...|+.|+..++.+.- --+.+++++ +..++
T Consensus 15 ~~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~---~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~l 87 (288)
T 3f7w_A 15 REVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPAL---DGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTL 87 (288)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCC---TTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEE
T ss_pred CCeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcch---hhHHHHHHHHHHHHHhhCCCCcceEEec----cCceE
Confidence 3455667899999999999999999999999876443322 3357889888887742 134444443 23579
Q ss_pred EEecCCCCCH
Q 001253 886 MYEYMARGSL 895 (1114)
Q Consensus 886 v~E~~~~gsL 895 (1114)
||||++++..
T Consensus 88 v~e~l~~~~~ 97 (288)
T 3f7w_A 88 AMEWVDERPP 97 (288)
T ss_dssp EEECCCCCCC
T ss_pred EEEeecccCC
Confidence 9999987643
No 430
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.49 E-value=3.8e-05 Score=75.57 Aligned_cols=82 Identities=10% Similarity=0.042 Sum_probs=38.1
Q ss_pred cCcEEEecCceeccCCCccccCCCCcceeeccccc-cccccccccccc----ccceEEECcccc-ccCCCchhhhhcccC
Q 001253 511 ALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNF-LTGRIPLEIFSC----KMLQRLDLSWNK-FVGALPREIGSLFQL 584 (1114)
Q Consensus 511 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~L 584 (1114)
+|+.|||+++.|+..--..+.++++|+.|+|++|. +++.--..+..+ ++|+.|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45566666655554333444555555555555553 443222222222 245555555542 443322334444445
Q ss_pred CeeeccCc
Q 001253 585 ELLKLSEN 592 (1114)
Q Consensus 585 ~~L~L~~N 592 (1114)
+.|+|+++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555444
No 431
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.18 E-value=0.00014 Score=68.38 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=59.2
Q ss_pred Hhhccccccc-ccCCccccchhhhHhhhccCcccccCCCCccccccccceEEeccCcccCCCCCccccccccccc--ccC
Q 001253 635 ALNLSYNNLS-GLIPPELGNLILLEYLLLNNNHLSGEIPGSFVNLSSLLGCNFSYNNLTGPIPSSQTFQNMSVNS--FSG 711 (1114)
Q Consensus 635 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~l~ls~N~l~g~ip~~~~~~~~~~~~--~~~ 711 (1114)
.++.+++.|+ ..+|..+. .+|++|||++|+|+...++.|..+++|+.|+|++|+|.+.+-..+...++.... ...
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~~ 89 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPY 89 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccccc
Confidence 4677777776 34565543 268899999999998888899999999999999999999776544434433221 112
Q ss_pred CCCCCCCCC
Q 001253 712 SKGLCGGPL 720 (1114)
Q Consensus 712 n~~lc~~p~ 720 (1114)
....|..|.
T Consensus 90 ~~~~C~~P~ 98 (130)
T 3rfe_A 90 RDLRCVAPP 98 (130)
T ss_dssp TTCBCCBST
T ss_pred cCcEeCcCh
Confidence 345666554
No 432
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.08 E-value=0.0011 Score=72.61 Aligned_cols=137 Identities=13% Similarity=0.133 Sum_probs=74.8
Q ss_pred CceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCce-eeEEeEEEecCceEEEEecC-C
Q 001253 814 RFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNI-VKLYGFCYHQGSNLLMYEYM-A 891 (1114)
Q Consensus 814 ~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~E~~-~ 891 (1114)
.+.|+.|....+|++ +.+++|+........ .....|+.+++.+....+ .+++++ +.+.-++|+||+ +
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~----~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~~ 91 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEEY----INRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIAG 91 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC----C----CCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCTT
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccce----eCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecCC
Confidence 568999999999999 568899876532211 113457766666642222 344433 344567999999 6
Q ss_pred CCCHHH--------H----------hccCCCCC----CH-HHHHHHHH--------------HHHHHH----HHHHh-CC
Q 001253 892 RGSLGE--------L----------LHGASSTL----DW-QTRFMIAL--------------GAAEGL----SYLHH-DC 929 (1114)
Q Consensus 892 ~gsL~~--------~----------l~~~~~~l----~~-~~~~~i~~--------------~i~~~L----~~LH~-~~ 929 (1114)
|.++.. . +|.....+ .. .....+.. .+.+.+ +.+.. ..
T Consensus 92 g~~l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~ 171 (301)
T 3dxq_A 92 AQTMSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPL 171 (301)
T ss_dssp CEECCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSCC
T ss_pred CccCCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcCC
Confidence 544421 0 11111100 11 11000000 011111 11111 12
Q ss_pred CCCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 930 KPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 930 ~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
.+.++|+|+.+.||+ ..++.+.++||..+...
T Consensus 172 ~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~~g 203 (301)
T 3dxq_A 172 PLAACHCDPLCENFL-DTGERMWIVDWEYSGMN 203 (301)
T ss_dssp CCEEECSCCCGGGEE-ECSSCEEECCCTTCEEE
T ss_pred CceeeccCCCcCCEE-ECCCCEEEEecccccCC
Confidence 346899999999999 56668899999988753
No 433
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.02 E-value=0.0017 Score=71.90 Aligned_cols=156 Identities=13% Similarity=0.105 Sum_probs=85.4
Q ss_pred CHHHHHHHhcCCcC-----CceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCc--eee
Q 001253 800 TFKDLVVATDNFDE-----RFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRN--IVK 872 (1114)
Q Consensus 800 ~~~~~~~~~~~~~~-----~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~ 872 (1114)
+.+++...-.+|.. .+.|+.|....+|+....+| .+++|+...... ...+..|+.+++.+.... +.+
T Consensus 8 ~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~~-----~~~l~~e~~~l~~L~~~g~~vP~ 81 (322)
T 2ppq_A 8 TEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRVE-----KNDLPFFLGLMQHLAAKGLSCPL 81 (322)
T ss_dssp CHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC--------CCHHHHHHHHHHHHHHTTCCCCC
T ss_pred CHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCCC-----HHHHHHHHHHHHHHHHCCCCCCc
Confidence 34444433344554 24577788899999987655 688998865311 123455666666553211 233
Q ss_pred EEeE------EEecCceEEEEecCCCCCHHH-----H---------hcc----CCCC----C---CHHHHHH--------
Q 001253 873 LYGF------CYHQGSNLLMYEYMARGSLGE-----L---------LHG----ASST----L---DWQTRFM-------- 913 (1114)
Q Consensus 873 l~~~------~~~~~~~~lv~E~~~~gsL~~-----~---------l~~----~~~~----l---~~~~~~~-------- 913 (1114)
++.. ....+..+++|+|++|..+.. + ++. .... . .|.....
T Consensus 82 ~~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 161 (322)
T 2ppq_A 82 PLPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADE 161 (322)
T ss_dssp BCCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGG
T ss_pred ccCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHh
Confidence 3321 123456789999999865321 0 111 0100 1 1222110
Q ss_pred ----HHHHHHHHHHHHHhC----CCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 914 ----IALGAAEGLSYLHHD----CKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 914 ----i~~~i~~~L~~LH~~----~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
+...+.+.+++++.. ...+++|+|+.+.||++++++.+.++||+.+..
T Consensus 162 ~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 162 VEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp TSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred hhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 011234455555532 234799999999999999876668999998764
No 434
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.96 E-value=0.0024 Score=71.09 Aligned_cols=139 Identities=17% Similarity=0.139 Sum_probs=72.0
Q ss_pred eecccCCeE-EEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCC--CceeeEEeEEEecCceEEEEecCCC
Q 001253 816 VIGRGACGT-VYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRH--RNIVKLYGFCYHQGSNLLMYEYMAR 892 (1114)
Q Consensus 816 ~lG~G~~g~-Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lv~E~~~~ 892 (1114)
.|+.|+... +|+....+|+.+++|....... ..+..|+.+++.+.. -.+.+++.+.. +.-+++||++++
T Consensus 25 ~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~------~~~~~e~~~l~~L~~~g~~vP~v~~~d~--~~g~ll~e~l~~ 96 (333)
T 3csv_A 25 PLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG------GDTQPFVDLAQYLRNLDISAPEIYAEEH--ARGLLLIEDLGD 96 (333)
T ss_dssp C--------CCEEEECTTCCEEEEEECCTTTT------CCSHHHHHHHHHHHHTTCBCCCEEEEET--TTTEEEECCCCS
T ss_pred ECCCCCCCceEEEEEcCCCCeEEEEECCCCCC------ccccHHHHHHHHHHhCCCCCCceeeecC--CCCEEEEeeCCC
Confidence 465565554 6677654467788876544321 113345666555532 23455665533 233789999987
Q ss_pred CCHHHHhccC---------------------C----CCCCHHHHH-------H-H------------HHHHHHHHHHHHh
Q 001253 893 GSLGELLHGA---------------------S----STLDWQTRF-------M-I------------ALGAAEGLSYLHH 927 (1114)
Q Consensus 893 gsL~~~l~~~---------------------~----~~l~~~~~~-------~-i------------~~~i~~~L~~LH~ 927 (1114)
..+.+++... . ..++..... . + ...+...++.+..
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~ 176 (333)
T 3csv_A 97 ALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILS 176 (333)
T ss_dssp CBHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 6665433210 0 011111100 0 0 0011122222211
Q ss_pred ---CCCCCeEecCCCCCCeEECCC----CCeEEeeccCceec
Q 001253 928 ---DCKPRIFHRDIKSNNILLDDK----FEAHVGDFGLAKVI 962 (1114)
Q Consensus 928 ---~~~~~ivH~Dlk~~Nill~~~----~~~kl~DfG~a~~~ 962 (1114)
...+.++|||+.+.||+++.+ +.+.++||+.+...
T Consensus 177 ~~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G 218 (333)
T 3csv_A 177 AQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG 218 (333)
T ss_dssp HHCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred hcccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence 123589999999999999875 67999999998864
No 435
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.89 E-value=0.0048 Score=68.38 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=81.9
Q ss_pred ceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCC--ceeeEEeE-----EEecCceEEEE
Q 001253 815 FVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHR--NIVKLYGF-----CYHQGSNLLMY 887 (1114)
Q Consensus 815 ~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~l~~~-----~~~~~~~~lv~ 887 (1114)
..++ |....||+....+|+.+++|+....... ...+..|..+++.+... .+++++.. ....+..++||
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~~----~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~ 106 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPERWT----ADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVF 106 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTTSC----HHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEE
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCCCC----HHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEE
Confidence 4577 8889999988777878999998643221 34566677777766321 23444432 22345668899
Q ss_pred ecCCCCCHH-----HH---------hc----cC----CCCCCHHHH----HHH---------------HHHHHHHHHHHH
Q 001253 888 EYMARGSLG-----EL---------LH----GA----SSTLDWQTR----FMI---------------ALGAAEGLSYLH 926 (1114)
Q Consensus 888 E~~~~gsL~-----~~---------l~----~~----~~~l~~~~~----~~i---------------~~~i~~~L~~LH 926 (1114)
||++|..+. .+ +| .. ....++... ..+ ...+.+.++.+.
T Consensus 107 ~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (328)
T 1zyl_A 107 PSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVT 186 (328)
T ss_dssp ECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 999885432 11 11 00 011222211 000 011112233332
Q ss_pred hC----CCCCeEecCCCCCCeEECCCCCeEEeeccCcee
Q 001253 927 HD----CKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 927 ~~----~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~ 961 (1114)
.. ....++|+|+++.||+++ + .+.++||+.+..
T Consensus 187 ~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 187 AHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp HHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred HHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 21 234789999999999999 4 899999998765
No 436
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.75 E-value=0.0034 Score=70.59 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=81.4
Q ss_pred ceecccCCeEEEEEEeC--------CCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-CCceeeEEeEEEecCceEE
Q 001253 815 FVIGRGACGTVYRAVLR--------TGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-HRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 815 ~~lG~G~~g~Vy~~~~~--------~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~l 885 (1114)
+.+..|....+|++... +++.|++|+...... ....+.+|..+++.+. +.-..++++++.+ .+
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~~----~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~ 127 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQ----GVDSLVLESVMFAILAERSLGPQLYGVFPE----GR 127 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC---C----CHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCccc----hHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----cc
Confidence 46777888999999874 247899998633211 1345668888887774 3223566665543 39
Q ss_pred EEecCCCCCHHHH-----------------hccC----CCCCC--HHHHHHHHHHHH-------------------HHHH
Q 001253 886 MYEYMARGSLGEL-----------------LHGA----SSTLD--WQTRFMIALGAA-------------------EGLS 923 (1114)
Q Consensus 886 v~E~~~~gsL~~~-----------------l~~~----~~~l~--~~~~~~i~~~i~-------------------~~L~ 923 (1114)
||||++|.++..- +|.. ..... +.+..++..++. ..++
T Consensus 128 v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (379)
T 3feg_A 128 LEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMG 207 (379)
T ss_dssp EEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHH
T ss_pred EEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHH
Confidence 9999998654311 1111 11122 344444443332 1223
Q ss_pred HHH----hC-CCCCeEecCCCCCCeEECCC----CCeEEeeccCcee
Q 001253 924 YLH----HD-CKPRIFHRDIKSNNILLDDK----FEAHVGDFGLAKV 961 (1114)
Q Consensus 924 ~LH----~~-~~~~ivH~Dlk~~Nill~~~----~~~kl~DfG~a~~ 961 (1114)
.|. .. ....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 208 ~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 208 NLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 332 21 23479999999999999876 7899999998874
No 437
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.69 E-value=0.00022 Score=71.58 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=7.7
Q ss_pred CCCCcceeecccccc
Q 001253 532 NLSNLVTFNVSSNFL 546 (1114)
Q Consensus 532 ~l~~L~~L~Ls~N~l 546 (1114)
.-+.|+.|+++.|.+
T Consensus 155 ~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 155 ENESLLRVGISFASM 169 (197)
T ss_dssp HCSSCCEEECCCCCH
T ss_pred hCCCcCeEeccCCCc
Confidence 334555555555544
No 438
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.68 E-value=0.0036 Score=72.05 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=48.2
Q ss_pred ceecccCCeEEEEEEeCC--------CcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCc-eeeEEeEEEecCceEE
Q 001253 815 FVIGRGACGTVYRAVLRT--------GHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRN-IVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 815 ~~lG~G~~g~Vy~~~~~~--------g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~l 885 (1114)
+.|+.|....||++...+ ++.+++|+.... .. ...+..|..+++.+...+ ..++++.+.+ .+
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~---~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~ 149 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ET---ESHLVAESVIFTLLSERHLGPKLYGIFSG----GR 149 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CC---HHHHHHHHHHHHHHHHTTSSSCEEEEETT----EE
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--Cc---HHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CE
Confidence 468889999999998753 578999998432 11 134557888887774323 3566665532 38
Q ss_pred EEecCCCCCH
Q 001253 886 MYEYMARGSL 895 (1114)
Q Consensus 886 v~E~~~~gsL 895 (1114)
||||++|.++
T Consensus 150 v~e~l~G~~l 159 (429)
T 1nw1_A 150 LEEYIPSRPL 159 (429)
T ss_dssp EECCCCEEEC
T ss_pred EEEEeCCccc
Confidence 9999986443
No 439
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.62 E-value=0.00053 Score=68.75 Aligned_cols=14 Identities=29% Similarity=0.591 Sum_probs=6.7
Q ss_pred ccCcEEEecCceec
Q 001253 510 NALQRLHLSDNYFT 523 (1114)
Q Consensus 510 ~~L~~L~Ls~N~l~ 523 (1114)
+.|+.|+|++|+|.
T Consensus 98 ~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 98 PSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECCSSBCC
T ss_pred CccCeEecCCCcCC
Confidence 44444555555444
No 440
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.26 E-value=0.01 Score=68.49 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=47.0
Q ss_pred ceecccCCeEEEEEEeCC-CcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCce-eeEEeEEEecCceEEEEecCCC
Q 001253 815 FVIGRGACGTVYRAVLRT-GHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNI-VKLYGFCYHQGSNLLMYEYMAR 892 (1114)
Q Consensus 815 ~~lG~G~~g~Vy~~~~~~-g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~E~~~~ 892 (1114)
+.|+.|....+|++...+ ++.+++|+........ -+..+|..+++.+...++ .++++++. + .+||||++|
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~----idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G 185 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI----INREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDG 185 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC----SCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCS
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh----cCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCC
Confidence 468889999999999874 4789999875432211 112568888887754333 56666652 2 369999987
Q ss_pred CCH
Q 001253 893 GSL 895 (1114)
Q Consensus 893 gsL 895 (1114)
.++
T Consensus 186 ~~l 188 (458)
T 2qg7_A 186 YAL 188 (458)
T ss_dssp EEC
T ss_pred ccC
Confidence 544
No 441
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.21 E-value=0.0054 Score=69.28 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=43.1
Q ss_pred ceecccCCeEEEEEEeCC---------CcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCc-eeeEEeEEEecCceE
Q 001253 815 FVIGRGACGTVYRAVLRT---------GHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRN-IVKLYGFCYHQGSNL 884 (1114)
Q Consensus 815 ~~lG~G~~g~Vy~~~~~~---------g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~ 884 (1114)
..++.|....+|+....+ ++.+++|+....... ..+...|..+++.+...+ +.++++.. . -+
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~----~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~ 110 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE----LYNTISEFEVYKTMSKYKIAPQLLNTF--N--GG 110 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG----TSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc----eecHHHHHHHHHHHHhcCCCCceEEec--C--Cc
Confidence 467888889999998764 268888887543211 112356777777664223 34555443 2 37
Q ss_pred EEEecCCCCCH
Q 001253 885 LMYEYMARGSL 895 (1114)
Q Consensus 885 lv~E~~~~gsL 895 (1114)
+||||++|..+
T Consensus 111 ~v~e~i~G~~l 121 (369)
T 3c5i_A 111 RIEEWLYGDPL 121 (369)
T ss_dssp EEEECCCSEEC
T ss_pred EEEEEecCCcC
Confidence 89999998543
No 442
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.19 E-value=0.024 Score=62.89 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=28.7
Q ss_pred CCeEecCCCCCCeEECCCCCeEEeeccCceec
Q 001253 931 PRIFHRDIKSNNILLDDKFEAHVGDFGLAKVI 962 (1114)
Q Consensus 931 ~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~ 962 (1114)
..++|+|+.+.||++++++.+.++||+.+...
T Consensus 206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~ 237 (339)
T 3i1a_A 206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA 237 (339)
T ss_dssp CEEECSCCCGGGEEECGGGCEEECCCSSCEEE
T ss_pred ceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC
Confidence 47999999999999998888999999988753
No 443
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=95.85 E-value=0.038 Score=55.50 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=68.0
Q ss_pred CHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCceecCCCCCCccccc
Q 001253 894 SLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAKVIDMPQSKSMSAI 973 (1114)
Q Consensus 894 sL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~ 973 (1114)
+|.++|+..+.++++++++.++.|.+++|.-.-....+ ..+=+.|..|++..+|.|...+ +.+.
T Consensus 34 SL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~~~--~~~i~~~~~i~l~~dG~V~f~~-~~s~------------- 97 (229)
T 2yle_A 34 SLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARRRQP--RHRVRSAAQIRVWRDGAVTLAP-AADD------------- 97 (229)
T ss_dssp EHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCC--CCCCCSGGGEEEETTSCEEECC-C----------------
T ss_pred cHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccC--CceecCCcceEEecCCceeccc-cccc-------------
Confidence 89999998889999999999999999998776321111 1333456899999999988753 1110
Q ss_pred cccccccCccccccCCCCcccchHHHHHHHHHHHhCCCC
Q 001253 974 AGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAP 1012 (1114)
Q Consensus 974 ~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p 1012 (1114)
.....+.|||... ...+.+.=|||+|+++|.-+--..|
T Consensus 98 ~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp ---------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 1122366788653 3456788899999999998874433
No 444
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.83 E-value=0.0095 Score=55.68 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=17.0
Q ss_pred cCcEEEecCceeccCCCccccCCCCcceeecccccc
Q 001253 511 ALQRLHLSDNYFTGELPREVGNLSNLVTFNVSSNFL 546 (1114)
Q Consensus 511 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 546 (1114)
+|+.|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 345555555555544444444444444444444443
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=95.50 E-value=0.029 Score=63.24 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=82.0
Q ss_pred ceecccCCeEEEEEEeCC--------CcEEEEEEecccCCC----------Chh-----hHHHHHHHHHHHhcCC-CCce
Q 001253 815 FVIGRGACGTVYRAVLRT--------GHTVAVKKLASNREG----------NNN-----VDNSFRAEILTLGKIR-HRNI 870 (1114)
Q Consensus 815 ~~lG~G~~g~Vy~~~~~~--------g~~vavK~~~~~~~~----------~~~-----~~~~~~~E~~~l~~l~-h~ni 870 (1114)
+.|..|-...+|++...+ ++.|.+++.-..... ... ..+....|..+++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 357678889999998753 367888887543221 000 0112234787877774 4445
Q ss_pred eeEEeEEEecCceEEEEecCCCCCHHH--H---------------hccC----CCCCC--HHHHHHHHHHHH--------
Q 001253 871 VKLYGFCYHQGSNLLMYEYMARGSLGE--L---------------LHGA----SSTLD--WQTRFMIALGAA-------- 919 (1114)
Q Consensus 871 v~l~~~~~~~~~~~lv~E~~~~gsL~~--~---------------l~~~----~~~l~--~~~~~~i~~~i~-------- 919 (1114)
.++++++.. .+|+||++|.+|.. + +|.. ..... +....++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 566766542 28999999754421 1 1111 11222 223333322221
Q ss_pred --------------HHHH----HHHhC-CCCCeEecCCCCCCeEECCC------CCeEEeeccCcee
Q 001253 920 --------------EGLS----YLHHD-CKPRIFHRDIKSNNILLDDK------FEAHVGDFGLAKV 961 (1114)
Q Consensus 920 --------------~~L~----~LH~~-~~~~ivH~Dlk~~Nill~~~------~~~kl~DfG~a~~ 961 (1114)
..+. ++... ....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 1122 23222 23479999999999999877 7899999998864
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=94.36 E-value=0.056 Score=61.53 Aligned_cols=73 Identities=7% Similarity=0.000 Sum_probs=46.9
Q ss_pred ceecccCCeEEEEEEeCC--------CcEEEEEEecccCCCChhhHHHHHHHHHHHhcCC-CCceeeEEeEEEecCceEE
Q 001253 815 FVIGRGACGTVYRAVLRT--------GHTVAVKKLASNREGNNNVDNSFRAEILTLGKIR-HRNIVKLYGFCYHQGSNLL 885 (1114)
Q Consensus 815 ~~lG~G~~g~Vy~~~~~~--------g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~l 885 (1114)
+.+..|....+|+....+ ++.|++|+....... .-+..+|..+++.+. +.-..++++.+ .-++
T Consensus 76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~----~idR~~E~~~l~~L~~~gi~P~l~~~~----~~~~ 147 (424)
T 3mes_A 76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGK----FYDSKVELDVFRYLSNINIAPNIIADF----PEGR 147 (424)
T ss_dssp EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-C----CCCHHHHHHHHHHHHHTTSSCCEEEEE----TTEE
T ss_pred EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcch----hcCHHHHHHHHHHHHhcCCCCCEEEEc----CCCE
Confidence 467778889999998763 578999986543221 112356777777664 22244555433 2378
Q ss_pred EEecCCCCCH
Q 001253 886 MYEYMARGSL 895 (1114)
Q Consensus 886 v~E~~~~gsL 895 (1114)
||||++|.++
T Consensus 148 I~efI~G~~l 157 (424)
T 3mes_A 148 IEEFIDGEPL 157 (424)
T ss_dssp EEECCCSEEC
T ss_pred EEEEeCCccC
Confidence 9999998653
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=90.37 E-value=0.17 Score=57.36 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=25.7
Q ss_pred CeEecCCCCCCeEE------CCCCCeEEeeccCcee
Q 001253 932 RIFHRDIKSNNILL------DDKFEAHVGDFGLAKV 961 (1114)
Q Consensus 932 ~ivH~Dlk~~Nill------~~~~~~kl~DfG~a~~ 961 (1114)
.++|+|+.+.||++ +++..++++||..|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 46799999999999 4567799999998874
No 448
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=74.04 E-value=6.5 Score=39.43 Aligned_cols=115 Identities=9% Similarity=0.107 Sum_probs=77.0
Q ss_pred CCCceeeEEeEEEecCceEEEEecCCCC-CHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEecCCCCCCeE
Q 001253 866 RHRNIVKLYGFCYHQGSNLLMYEYMARG-SLGELLHGASSTLDWQTRFMIALGAAEGLSYLHHDCKPRIFHRDIKSNNIL 944 (1114)
Q Consensus 866 ~h~niv~l~~~~~~~~~~~lv~E~~~~g-sL~~~l~~~~~~l~~~~~~~i~~~i~~~L~~LH~~~~~~ivH~Dlk~~Nil 944 (1114)
.||+.++. .+-.+++...+.++.-+.+ +... ++ ..+...+++++.+|+...+++++ -+|--+.|+|++
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-ik----~~~~~eKlr~l~ni~~l~~~~~~-----r~tf~L~P~NL~ 111 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-IK----SFTKNEKLRYLLNIKNLEEVNRT-----RYTFVLAPDELF 111 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-GG----GSCHHHHHHHHHHGGGGGGGGGS-----SEECCCSGGGEE
T ss_pred cCCcccce-EEEEcccEEEEEEEcCcccCCHHH-HH----hcCHHHHHHHHHHHHHHHHHhcC-----ceEEEEecceEE
Confidence 57888866 4556666666666655432 2222 32 57789999999999988766653 478899999999
Q ss_pred ECCCCCeEEeeccCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCC
Q 001253 945 LDDKFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQ 1014 (1114)
Q Consensus 945 l~~~~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~ 1014 (1114)
++.++.+++.=.|+... ++|.. .+...=.-.+=+++..+++++..|.
T Consensus 112 f~~~~~p~i~~RGik~~------------------l~P~~-----~~ee~fL~qyKAliiall~~K~~Fe 158 (215)
T 4ann_A 112 FTRDGLPIAKTRGLQNV------------------VDPLP-----VSEAEFLTRYKALVICAFNEKQSFD 158 (215)
T ss_dssp ECTTSCEEESCCEETTT------------------BSCCC-----CCHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred EcCCCCEEEEEccCccC------------------CCCCC-----CCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 99999999976665332 22221 1111123356678888899988774
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=66.74 E-value=10 Score=38.21 Aligned_cols=115 Identities=10% Similarity=0.045 Sum_probs=75.8
Q ss_pred CCCceeeEEeEEEecCceEEEEecCCCCCHHHHhccCCCCCCHHHHHHHHHHHHHHHH-HHHhCCCCCeEecCCCCCCeE
Q 001253 866 RHRNIVKLYGFCYHQGSNLLMYEYMARGSLGELLHGASSTLDWQTRFMIALGAAEGLS-YLHHDCKPRIFHRDIKSNNIL 944 (1114)
Q Consensus 866 ~h~niv~l~~~~~~~~~~~lv~E~~~~gsL~~~l~~~~~~l~~~~~~~i~~~i~~~L~-~LH~~~~~~ivH~Dlk~~Nil 944 (1114)
.||+. -..+-.+++...+.++.-+++.=...++ ..+...+++.+.+++.... +++ .-+|--+.|+|++
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~----~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL~ 116 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIR----KTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPENLM 116 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHH----TSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGGEE
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHH----hcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCceEE
Confidence 57777 3445567777777787664443333343 5788899999999887766 554 4578889999999
Q ss_pred ECCCCCeEEeeccCceecCCCCCCccccccccccccCccccccCCCCcccchHHHHHHHHHHHhCCCCCC
Q 001253 945 LDDKFEAHVGDFGLAKVIDMPQSKSMSAIAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRAPVQ 1014 (1114)
Q Consensus 945 l~~~~~~kl~DfG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~p~~ 1014 (1114)
++.++.+++.-.|+-. -++|..+. ..-=.-.+=+++..++.++..|.
T Consensus 117 f~~~~~p~i~hRGi~~------------------~lpP~e~~-----ee~fl~qyKali~all~~K~~Fe 163 (219)
T 4ano_A 117 FNRALEPFFLHVGVKE------------------SLPPDEWD-----DERLLREVKATVLALTEGEYRFD 163 (219)
T ss_dssp ECTTCCEEESCCEETT------------------TBSSCSCC-----HHHHHHHHHHHHHHHTTCSSCHH
T ss_pred EeCCCcEEEEEcCCcc------------------cCCCCCCC-----HHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999997666433 23333211 11112345667777888876663
No 450
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=65.19 E-value=0.81 Score=52.74 Aligned_cols=63 Identities=13% Similarity=-0.008 Sum_probs=18.1
Q ss_pred CCceecccCCeEEEEEEeCC-CcEEEE------EEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeEEEe
Q 001253 813 ERFVIGRGACGTVYRAVLRT-GHTVAV------KKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGFCYH 879 (1114)
Q Consensus 813 ~~~~lG~G~~g~Vy~~~~~~-g~~vav------K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 879 (1114)
+.+++| ||.||+|.+.. ..+||| |..+..... .+....+.+|..+++..+|||+++.+++...
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~-~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVS-EKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC------------------------------------CBCCCEEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCcccccccccc-ccccccccccccccccccccccCCCcceEEe
Confidence 345666 99999999863 367888 665433222 2223467788888888999999999887643
No 451
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=47.87 E-value=13 Score=25.71 Aligned_cols=6 Identities=33% Similarity=0.689 Sum_probs=2.2
Q ss_pred HHHhHh
Q 001253 750 IAAAIG 755 (1114)
Q Consensus 750 i~~~~~ 755 (1114)
.+++++
T Consensus 14 AGiVvG 19 (38)
T 2k1k_A 14 VAVIFG 19 (38)
T ss_dssp HHHHHH
T ss_pred eeeehH
Confidence 333333
No 452
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=43.34 E-value=19 Score=25.72 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=5.5
Q ss_pred hhHHHhHhhHHH
Q 001253 748 AIIAAAIGGVSL 759 (1114)
Q Consensus 748 ~~i~~~~~~~~l 759 (1114)
.+++.+++++++
T Consensus 11 aIA~gVVgGv~~ 22 (44)
T 2l2t_A 11 LIAAGVIGGLFI 22 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred eEEEeehHHHHH
Confidence 344455554443
No 453
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=35.65 E-value=1.5e+02 Score=35.27 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=31.8
Q ss_pred HHHHHHHHHHH--HHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 909 QTRFMIALGAA--EGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 909 ~~~~~i~~~i~--~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
..+..++..+| +.+.|+=.- +|=.++|||++.+|++.-+|||.+-
T Consensus 529 ~ar~nF~~SlA~~Svv~YILGl-------GDRH~~NILid~tG~v~HIDFG~~f 575 (696)
T 2x6h_A 529 EVMDTYIKSCAGYCVITYLLGV-------GDRHLDNLLLTTNGKLFHIDFGYIL 575 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-------CCCCTTTEEECTTSCEEECCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHccC-------CCCCCcceEEeCCCCEEEEeehhhh
Confidence 34445554433 344555432 6888999999999999999999874
No 454
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=32.70 E-value=1.5e+02 Score=34.66 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHH--HHHHHHHhCCCCCeEecCCCCCCeEECCCCCeEEeeccCce
Q 001253 908 WQTRFMIALGAA--EGLSYLHHDCKPRIFHRDIKSNNILLDDKFEAHVGDFGLAK 960 (1114)
Q Consensus 908 ~~~~~~i~~~i~--~~L~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~DfG~a~ 960 (1114)
+..+..++...| +.+.|+=.- +|=.++|||++.+|++.=+|||.+-
T Consensus 454 ~~a~~nF~~S~A~ySvv~YILGi-------gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 454 AEVMDTYVKSCAGYCVITYILGV-------GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred HHHHHHHHHHHHHHhHhheeeec-------cCCCCcceeEcCCCCEeeeehHHhh
Confidence 455555555543 345565532 5778999999999999999999874
No 455
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=29.24 E-value=90 Score=33.40 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=72.4
Q ss_pred CcCCceecccCCeEEEEEEeCCCcEEEEEEecccCCCChhhHHHHHHHHHHHhcCCCCceeeEEeE-------------E
Q 001253 811 FDERFVIGRGACGTVYRAVLRTGHTVAVKKLASNREGNNNVDNSFRAEILTLGKIRHRNIVKLYGF-------------C 877 (1114)
Q Consensus 811 ~~~~~~lG~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~-------------~ 877 (1114)
+..++..-.|.. .||.+.. ++..|+||-.. .-..+.+..++...=.+.-|+..-+.-. +
T Consensus 71 v~~I~~s~~Gst-gvff~~t-d~~~~VVK~s~------~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~ 142 (342)
T 1cja_A 71 FKGIERSEKGTE-GLFFVET-ESGVFIVKRST------NIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAI 142 (342)
T ss_dssp EEEEEECCSTTS-CEEEEEE-SSCEEEEECCT------THHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHH
T ss_pred eeEEEeccCCCC-CeEEEEe-CCCEEEEeCcH------HHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHh
Confidence 333444455654 5555554 47789999431 1123445555555555566654322211 0
Q ss_pred E---------ecCceEEEEecCCCCCHHHHhccC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCC-CeEe-cCCCCCCeEE
Q 001253 878 Y---------HQGSNLLMYEYMARGSLGELLHGA-SSTLDWQTRFMIALGAAEGLSYLHHDCKP-RIFH-RDIKSNNILL 945 (1114)
Q Consensus 878 ~---------~~~~~~lv~E~~~~gsL~~~l~~~-~~~l~~~~~~~i~~~i~~~L~~LH~~~~~-~ivH-~Dlk~~Nill 945 (1114)
. .....+++|||++|..|.+.-... ...+..+....+. -+-+++++..+.++ +.++ .-=.+.|||+
T Consensus 143 ~~~~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~~~~~f~~~~~k~LG--~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~ 220 (342)
T 1cja_A 143 DKSFRVITTLANQANILLMELVRGITLNKLTTTSAPEVLTKSTMQQLG--SLMALDVIVNNSDRLPIAWTNEGNLDNIML 220 (342)
T ss_dssp CSSSCHHHHHTTCSEEEEEECCCEEESTTCCSSSHHHHSCHHHHHHHH--HHHHHHHHHTCCSSSCSSSCSCCCGGGEEE
T ss_pred hhhhHHHHHhhcccceehhhhcCCCccccchhhhhhhhcCHHHHHhhc--hhheehhhhcCCccCcccccCCCChhheEE
Confidence 0 012456999999976655432210 0112222222211 13356666665432 2222 1247889999
Q ss_pred CCCCC-eEEeeccCcee
Q 001253 946 DDKFE-AHVGDFGLAKV 961 (1114)
Q Consensus 946 ~~~~~-~kl~DfG~a~~ 961 (1114)
+++.. +.++|-+.+..
T Consensus 221 ~~~n~~~~~IDhn~af~ 237 (342)
T 1cja_A 221 SERGATVVPIDSKIIPL 237 (342)
T ss_dssp ESBTTCEEECSCCCCCC
T ss_pred eCCCCeEEEEcCCcccc
Confidence 77554 88999998865
No 456
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.97 E-value=52 Score=24.67 Aligned_cols=19 Identities=11% Similarity=0.280 Sum_probs=7.5
Q ss_pred hhHHHhHhhHHHHHHhhhh
Q 001253 748 AIIAAAIGGVSLVLITVII 766 (1114)
Q Consensus 748 ~~i~~~~~~~~l~~i~~~~ 766 (1114)
++++++.|.+.+.+++++.
T Consensus 15 Ii~svl~GLllL~li~~~L 33 (54)
T 2knc_A 15 VLVGVLGGLLLLTILVLAM 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333
No 457
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=28.82 E-value=40 Score=23.56 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=5.6
Q ss_pred hhhHHHhHhhHHHH
Q 001253 747 VAIIAAAIGGVSLV 760 (1114)
Q Consensus 747 ~~~i~~~~~~~~l~ 760 (1114)
.++++.++++++++
T Consensus 13 ~~I~~~vv~Gv~ll 26 (41)
T 2k9y_A 13 LAVIGGVAVGVVLL 26 (41)
T ss_dssp THHHHHHHHHHHHH
T ss_pred EEEEeehhHHHHHH
Confidence 33344444444433
No 458
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.72 E-value=38 Score=29.21 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=27.8
Q ss_pred cccCccccccccccccchhhcccccccCCchhhhcCCCccceeeeccc
Q 001253 257 QLSGVIPKELGNCTSLETLALYDNKQVGQLPKELGSIGSLKYLYIYRN 304 (1114)
Q Consensus 257 ~l~~~~p~~l~~l~~L~~L~Ls~N~~~~~~p~~~~~l~~L~~L~L~~n 304 (1114)
.++.+-..+|.+|++|+.+.+..+ ++......|..+.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444456666677776666554 34444555666677776666543
No 459
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=28.60 E-value=30 Score=24.70 Aligned_cols=8 Identities=50% Similarity=0.933 Sum_probs=3.4
Q ss_pred hhHHHhHh
Q 001253 748 AIIAAAIG 755 (1114)
Q Consensus 748 ~~i~~~~~ 755 (1114)
.+++.++|
T Consensus 13 ~Ia~~vVG 20 (44)
T 2jwa_A 13 SIISAVVG 20 (44)
T ss_dssp HHHHHHHH
T ss_pred chHHHHHH
Confidence 34444444
No 460
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=22.09 E-value=83 Score=23.55 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=7.5
Q ss_pred hhHHHhHhhHHHHHHhhhh
Q 001253 748 AIIAAAIGGVSLVLITVII 766 (1114)
Q Consensus 748 ~~i~~~~~~~~l~~i~~~~ 766 (1114)
++++++.|.+.+.+++++.
T Consensus 12 Ii~svl~GLLLL~Lii~~L 30 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLLILAL 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444333
No 461
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.02 E-value=94 Score=26.68 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=16.0
Q ss_pred CCccccccccceeccccccccccCCCCCCCCccceeecc
Q 001253 192 PTLGNLKRLKSFRAGQNLISGSLPSEIGGCESLQYLGLA 230 (1114)
Q Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls 230 (1114)
.+|.+++.|+.+.+-.+ ++.+...+|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444444444444332 222333444444444444443
Done!