BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001254
         (1113 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein
            OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1
          Length = 1042

 Score =  917 bits (2370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1045 (51%), Positives = 730/1045 (69%), Gaps = 103/1045 (9%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIF 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E++
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   EHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG 121
            ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G
Sbjct: 75   DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVG 134

Query: 122  VEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 181
            + KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQA
Sbjct: 135  IAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQA 194

Query: 182  EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241
            EANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHE
Sbjct: 195  EANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHE 254

Query: 242  RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLK 301
            RLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    K
Sbjct: 255  RLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAK 314

Query: 302  REE---------------------------AVIEREASLQKKEQKLLVSQETLASKESNE 334
            REE                           AV ERE+SL KKEQ+LLV++E +ASKES  
Sbjct: 315  REEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESEL 374

Query: 335  IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREH 394
            IQ ++AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ + E+EH
Sbjct: 375  IQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEH 434

Query: 395  DLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQK 454
            DLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  +  +LQ+
Sbjct: 435  DLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQ 494

Query: 455  SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLE 514
            SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++E
Sbjct: 495  SLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVE 554

Query: 515  KAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574
            KAKFEAEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK DV+S
Sbjct: 555  KAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVES 614

Query: 575  LNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRERE 634
            LNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S R+RE
Sbjct: 615  LNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDRE 674

Query: 635  KAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSI 694
            KAFE+EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAEL +S+
Sbjct: 675  KAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSV 734

Query: 695  EELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKK 754
            EEL VQR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K
Sbjct: 735  EELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEK 794

Query: 755  ISAKRHLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPSLARFS 807
            +SA   L Q+       +  D + D       V+N+ D +N+ S+++    +P S   FS
Sbjct: 795  VSA---LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFS 844

Query: 808  WIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPS 867
            WIKR  +L+FK S E S                           + + + E      VPS
Sbjct: 845  WIKRCTNLIFKTSPEKST--------------------------LMHHYEEEGG---VPS 875

Query: 868  ENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQ 927
            E       + LES   +  A     S++ + + A RKRR +    + SE    NNK+RK 
Sbjct: 876  EK------LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNNKKRKH 927

Query: 928  QEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEAS 987
              D  +  S+EA     ++   N+PED+H L S +++  P G+                 
Sbjct: 928  --DVTQKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM----------------- 967

Query: 988  ILIVDKIIKISEVTCEMTDADNFIN 1012
             +++ + +KI+ VTCE T+  N + 
Sbjct: 968  -VVISETVKITRVTCE-TEVTNKVT 990


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.125    0.324 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 370,540,443
Number of Sequences: 539616
Number of extensions: 15840321
Number of successful extensions: 144246
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 5451
Number of HSP's that attempted gapping in prelim test: 82420
Number of HSP's gapped (non-prelim): 28824
length of query: 1113
length of database: 191,569,459
effective HSP length: 128
effective length of query: 985
effective length of database: 122,498,611
effective search space: 120661131835
effective search space used: 120661131835
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)