Query 001254
Match_columns 1113
No_of_seqs 42 out of 44
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 19:57:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 99.5 6E-07 1.3E-11 108.1 66.3 148 125-279 251-401 (880)
2 KOG0161 Myosin class II heavy 99.3 2.3E-05 5.1E-10 101.8 79.0 368 342-724 1119-1530(1930)
3 PRK02224 chromosome segregatio 99.2 5.2E-05 1.1E-09 91.7 72.0 93 109-205 148-240 (880)
4 TIGR00606 rad50 rad50. This fa 99.1 0.00013 2.9E-09 92.8 79.2 76 127-202 396-471 (1311)
5 TIGR00606 rad50 rad50. This fa 99.1 0.0002 4.3E-09 91.2 73.6 77 170-247 576-652 (1311)
6 PRK03918 chromosome segregatio 98.9 0.00057 1.2E-08 82.6 72.3 42 212-253 244-285 (880)
7 TIGR02168 SMC_prok_B chromosom 98.8 0.0015 3.3E-08 79.7 77.9 10 27-36 124-133 (1179)
8 PRK03918 chromosome segregatio 98.6 0.0038 8.3E-08 75.7 66.9 15 20-34 32-46 (880)
9 TIGR02168 SMC_prok_B chromosom 98.6 0.0046 1E-07 75.6 84.3 29 678-706 993-1021(1179)
10 KOG0161 Myosin class II heavy 98.5 0.014 3.1E-07 77.1 82.6 282 36-328 835-1135(1930)
11 PRK01156 chromosome segregatio 98.5 0.012 2.5E-07 72.3 66.2 49 679-727 682-730 (895)
12 PRK01156 chromosome segregatio 98.4 0.017 3.6E-07 71.1 73.6 58 653-710 670-727 (895)
13 COG1196 Smc Chromosome segrega 98.4 0.028 6E-07 71.7 81.0 93 54-148 216-311 (1163)
14 PF12128 DUF3584: Protein of u 98.3 0.032 6.8E-07 71.5 68.3 207 479-689 594-810 (1201)
15 TIGR02169 SMC_prok_A chromosom 98.3 0.025 5.4E-07 69.8 80.8 16 25-40 120-135 (1164)
16 TIGR02169 SMC_prok_A chromosom 98.3 0.032 7E-07 68.9 84.4 32 695-726 982-1013(1164)
17 KOG4674 Uncharacterized conser 97.9 0.23 5E-06 65.8 73.7 454 40-528 861-1382(1822)
18 COG0419 SbcC ATPase involved i 97.9 0.17 3.7E-06 63.1 70.1 87 178-264 274-366 (908)
19 KOG1029 Endocytic adaptor prot 97.9 0.02 4.4E-07 69.7 31.4 217 347-587 316-566 (1118)
20 COG1196 Smc Chromosome segrega 97.8 0.29 6.2E-06 62.8 74.6 191 24-218 121-342 (1163)
21 PF10174 Cast: RIM-binding pro 97.7 0.34 7.3E-06 60.3 63.7 323 295-629 181-533 (775)
22 PF07888 CALCOCO1: Calcium bin 97.6 0.28 6.1E-06 58.9 41.1 44 684-727 409-452 (546)
23 COG0419 SbcC ATPase involved i 97.6 0.45 9.8E-06 59.5 72.4 63 476-539 557-619 (908)
24 PF01576 Myosin_tail_1: Myosin 97.4 3.1E-05 6.6E-10 95.1 0.0 509 106-698 41-566 (859)
25 PF07888 CALCOCO1: Calcium bin 97.1 1.2 2.5E-05 53.8 41.2 96 488-587 353-448 (546)
26 KOG0250 DNA repair protein RAD 96.9 2 4.3E-05 55.1 33.6 106 443-548 358-464 (1074)
27 PF00261 Tropomyosin: Tropomyo 96.8 0.91 2E-05 48.7 26.2 178 227-417 57-234 (237)
28 PF00261 Tropomyosin: Tropomyo 96.8 0.65 1.4E-05 49.7 24.3 61 233-293 91-151 (237)
29 PF10174 Cast: RIM-binding pro 96.5 4.1 8.9E-05 51.2 60.4 243 48-333 71-316 (775)
30 PRK11637 AmiB activator; Provi 96.3 1.5 3.3E-05 50.5 25.5 45 299-343 91-135 (428)
31 PRK12704 phosphodiesterase; Pr 96.3 0.15 3.3E-06 60.5 18.1 77 350-433 59-135 (520)
32 PF00038 Filament: Intermediat 96.3 2.1 4.7E-05 46.6 34.2 232 489-735 58-295 (312)
33 KOG4674 Uncharacterized conser 96.3 7.5 0.00016 52.6 76.7 453 47-523 575-1098(1822)
34 PRK11637 AmiB activator; Provi 96.3 3.1 6.8E-05 48.0 28.1 26 591-616 158-183 (428)
35 PF12128 DUF3584: Protein of u 96.2 6.8 0.00015 51.1 72.2 86 489-574 675-765 (1201)
36 KOG0964 Structural maintenance 96.2 6.4 0.00014 50.4 34.9 300 205-521 172-489 (1200)
37 TIGR03319 YmdA_YtgF conserved 95.9 0.33 7.1E-06 57.8 18.1 75 350-431 53-127 (514)
38 PF08317 Spc7: Spc7 kinetochor 95.8 2.1 4.5E-05 48.1 22.5 166 397-568 127-292 (325)
39 PRK00106 hypothetical protein; 95.7 0.83 1.8E-05 54.9 20.1 75 350-431 74-148 (535)
40 PF01576 Myosin_tail_1: Myosin 95.6 0.003 6.6E-08 78.1 0.0 221 45-272 202-429 (859)
41 KOG0018 Structural maintenance 95.2 15 0.00032 47.7 31.9 94 492-588 303-399 (1141)
42 PRK12704 phosphodiesterase; Pr 95.1 0.29 6.3E-06 58.3 13.9 62 359-423 57-118 (520)
43 PHA02562 46 endonuclease subun 95.1 9.1 0.0002 44.8 27.6 90 455-544 307-396 (562)
44 KOG0933 Structural maintenance 95.1 16 0.00034 47.3 33.1 274 257-548 679-979 (1174)
45 TIGR03319 YmdA_YtgF conserved 94.9 0.36 7.9E-06 57.4 13.8 70 359-431 51-120 (514)
46 PRK00106 hypothetical protein; 94.9 1.2 2.6E-05 53.6 18.0 12 896-907 476-487 (535)
47 KOG0977 Nuclear envelope prote 94.6 15 0.00033 44.8 29.5 311 130-499 68-384 (546)
48 PRK04863 mukB cell division pr 94.4 27 0.00059 47.1 43.0 106 171-277 293-398 (1486)
49 PHA02562 46 endonuclease subun 94.1 15 0.00034 43.0 33.9 99 434-539 307-405 (562)
50 PF12072 DUF3552: Domain of un 94.0 1.1 2.5E-05 47.0 13.7 70 356-425 61-130 (201)
51 KOG0964 Structural maintenance 93.8 29 0.00063 45.0 33.9 116 314-431 170-298 (1200)
52 PF05701 WEMBL: Weak chloropla 93.2 25 0.00054 42.4 47.9 147 423-587 282-428 (522)
53 PF13851 GAS: Growth-arrest sp 92.3 18 0.00039 38.7 20.1 143 480-639 22-168 (201)
54 KOG1029 Endocytic adaptor prot 92.3 42 0.0009 42.8 29.8 118 439-576 316-433 (1118)
55 KOG0996 Structural maintenance 92.3 50 0.0011 43.7 41.6 338 236-581 269-612 (1293)
56 PF12072 DUF3552: Domain of un 91.6 5 0.00011 42.4 14.4 59 374-432 72-130 (201)
57 COG1340 Uncharacterized archae 90.9 34 0.00075 39.1 30.3 53 394-446 30-82 (294)
58 PF00038 Filament: Intermediat 90.4 31 0.00068 37.8 37.2 241 441-698 2-250 (312)
59 PRK12705 hypothetical protein; 89.9 18 0.00039 43.8 18.5 60 357-423 61-120 (508)
60 PF05667 DUF812: Protein of un 88.9 69 0.0015 39.7 24.8 216 254-489 320-544 (594)
61 TIGR03185 DNA_S_dndD DNA sulfu 88.3 72 0.0016 39.2 33.8 18 20-37 37-54 (650)
62 PF05557 MAD: Mitotic checkpoi 87.7 3.8 8.2E-05 50.4 11.4 22 619-640 618-639 (722)
63 KOG0612 Rho-associated, coiled 86.8 1.3E+02 0.0028 40.4 42.3 28 686-714 1016-1043(1317)
64 PF05557 MAD: Mitotic checkpoi 86.2 7.9 0.00017 47.8 13.0 69 256-325 258-326 (722)
65 smart00787 Spc7 Spc7 kinetocho 85.6 73 0.0016 36.5 22.0 167 396-568 121-287 (312)
66 PF08317 Spc7: Spc7 kinetochor 84.9 74 0.0016 36.1 18.7 33 493-525 231-263 (325)
67 KOG0994 Extracellular matrix g 83.3 1.8E+02 0.0039 39.1 31.6 204 222-431 1520-1740(1758)
68 PRK09039 hypothetical protein; 82.2 1E+02 0.0022 35.5 18.8 114 116-233 65-178 (343)
69 PF12718 Tropomyosin_1: Tropom 82.0 64 0.0014 33.0 16.6 90 182-282 11-100 (143)
70 KOG0250 DNA repair protein RAD 81.8 1.9E+02 0.0042 38.3 52.1 134 127-264 276-410 (1074)
71 TIGR01005 eps_transp_fam exopo 80.8 1.3E+02 0.0028 37.4 20.1 72 147-218 184-263 (754)
72 PRK04863 mukB cell division pr 79.9 2.5E+02 0.0055 38.6 48.6 30 333-362 505-534 (1486)
73 PF13863 DUF4200: Domain of un 79.9 46 0.001 32.1 12.9 89 364-462 12-100 (126)
74 TIGR02680 conserved hypothetic 79.4 2.4E+02 0.0053 38.1 29.6 118 62-194 711-830 (1353)
75 PF09726 Macoilin: Transmembra 79.1 1.9E+02 0.0041 36.7 26.5 54 357-418 543-597 (697)
76 PF10146 zf-C4H2: Zinc finger- 79.1 79 0.0017 35.0 15.7 77 628-712 4-80 (230)
77 TIGR03185 DNA_S_dndD DNA sulfu 78.6 1.8E+02 0.0038 36.0 36.3 47 658-704 422-468 (650)
78 PF05262 Borrelia_P83: Borreli 77.5 1.1E+02 0.0024 37.2 17.6 70 405-474 189-258 (489)
79 KOG0612 Rho-associated, coiled 76.4 2.9E+02 0.0063 37.3 48.0 38 964-1002 1127-1164(1317)
80 PRK12705 hypothetical protein; 76.1 1.4E+02 0.003 36.7 17.9 60 350-413 65-124 (508)
81 PF06818 Fez1: Fez1; InterPro 76.0 88 0.0019 34.3 14.8 130 444-595 32-170 (202)
82 PF09755 DUF2046: Uncharacteri 75.3 1.7E+02 0.0036 34.1 20.6 29 570-598 113-141 (310)
83 TIGR01843 type_I_hlyD type I s 74.6 1.5E+02 0.0033 33.2 20.0 53 2-65 47-102 (423)
84 PF00769 ERM: Ezrin/radixin/mo 73.7 1.1E+02 0.0024 33.8 15.1 79 443-521 12-90 (246)
85 PRK09039 hypothetical protein; 73.1 1.8E+02 0.004 33.5 20.2 51 465-515 117-167 (343)
86 TIGR03007 pepcterm_ChnLen poly 72.3 2.1E+02 0.0045 33.7 18.9 33 153-185 157-189 (498)
87 PF09755 DUF2046: Uncharacteri 72.2 2E+02 0.0043 33.5 24.1 162 504-672 32-200 (310)
88 PF05622 HOOK: HOOK protein; 72.1 1.2 2.6E-05 54.5 0.0 155 191-359 192-357 (713)
89 PF11559 ADIP: Afadin- and alp 72.0 43 0.00092 33.6 10.7 76 396-474 71-146 (151)
90 KOG0977 Nuclear envelope prote 72.0 2.6E+02 0.0057 34.8 35.5 275 353-685 90-377 (546)
91 PF10473 CENP-F_leu_zip: Leuci 71.7 1.3E+02 0.0028 31.2 18.3 88 468-555 7-94 (140)
92 PF04111 APG6: Autophagy prote 69.7 70 0.0015 36.4 12.9 16 685-700 166-181 (314)
93 KOG4643 Uncharacterized coiled 69.2 3.9E+02 0.0084 35.7 46.0 131 396-526 413-550 (1195)
94 PF05483 SCP-1: Synaptonemal c 66.4 3.8E+02 0.0082 34.5 67.9 324 193-538 216-566 (786)
95 PF04111 APG6: Autophagy prote 66.4 84 0.0018 35.8 12.7 34 479-512 100-133 (314)
96 KOG0804 Cytoplasmic Zn-finger 64.9 1.7E+02 0.0038 35.6 15.1 109 492-623 347-455 (493)
97 PF00769 ERM: Ezrin/radixin/mo 62.8 1.8E+02 0.0039 32.2 14.0 121 162-282 3-123 (246)
98 COG4026 Uncharacterized protei 62.2 74 0.0016 35.7 10.8 83 480-566 118-205 (290)
99 TIGR01000 bacteriocin_acc bact 62.0 1.5E+02 0.0032 34.9 14.0 17 45-61 105-121 (457)
100 KOG0976 Rho/Rac1-interacting s 61.4 5E+02 0.011 34.1 45.3 370 304-725 92-471 (1265)
101 PF12126 DUF3583: Protein of u 61.4 2.5E+02 0.0055 32.7 15.0 121 448-579 4-124 (324)
102 COG4942 Membrane-bound metallo 60.9 3.7E+02 0.0081 32.5 29.3 76 443-521 171-246 (420)
103 PF10146 zf-C4H2: Zinc finger- 60.7 2E+02 0.0043 32.0 13.8 95 473-567 3-103 (230)
104 COG1579 Zn-ribbon protein, pos 59.6 3E+02 0.0065 31.0 20.4 68 339-410 15-82 (239)
105 COG1340 Uncharacterized archae 58.9 3.4E+02 0.0074 31.5 28.8 25 615-639 132-156 (294)
106 KOG3200 Uncharacterized conser 58.3 21 0.00045 38.6 5.7 56 808-863 69-160 (224)
107 PLN03188 kinesin-12 family pro 58.2 4.3E+02 0.0093 36.0 18.0 151 111-287 1079-1250(1320)
108 COG2433 Uncharacterized conser 58.1 1.5E+02 0.0032 37.3 13.3 71 466-540 424-494 (652)
109 PF09325 Vps5: Vps5 C terminal 53.3 2.9E+02 0.0063 29.0 16.3 65 170-237 162-235 (236)
110 PF10186 Atg14: UV radiation r 51.8 3.4E+02 0.0073 29.2 17.1 91 250-340 65-155 (302)
111 TIGR02977 phageshock_pspA phag 50.5 3.6E+02 0.0077 29.1 17.0 124 26-149 2-137 (219)
112 COG1579 Zn-ribbon protein, pos 49.1 4.4E+02 0.0094 29.8 22.8 90 505-598 95-184 (239)
113 PF05701 WEMBL: Weak chloropla 48.1 6E+02 0.013 31.1 48.6 66 259-327 169-234 (522)
114 PRK00409 recombination and DNA 46.8 4.3E+02 0.0093 34.0 15.4 105 256-360 489-593 (782)
115 KOG0946 ER-Golgi vesicle-tethe 46.6 8.3E+02 0.018 32.3 26.7 75 260-342 679-753 (970)
116 PF03904 DUF334: Domain of unk 46.3 4.8E+02 0.01 29.5 14.7 111 492-608 43-154 (230)
117 TIGR01843 type_I_hlyD type I s 46.0 4.8E+02 0.01 29.4 19.1 47 201-247 132-178 (423)
118 PRK04778 septation ring format 45.3 6.7E+02 0.015 30.8 43.5 411 211-727 89-521 (569)
119 TIGR03017 EpsF chain length de 45.3 5.4E+02 0.012 29.8 19.5 126 146-272 160-299 (444)
120 PRK06800 fliH flagellar assemb 44.3 71 0.0015 34.9 7.1 50 676-725 36-85 (228)
121 PF12329 TMF_DNA_bd: TATA elem 43.4 2.2E+02 0.0048 26.4 9.2 67 452-528 3-69 (74)
122 PF10473 CENP-F_leu_zip: Leuci 43.2 4.1E+02 0.0089 27.8 16.6 100 232-331 1-100 (140)
123 PF07926 TPR_MLP1_2: TPR/MLP1/ 42.8 3.6E+02 0.0078 27.0 16.9 96 443-541 17-112 (132)
124 TIGR01005 eps_transp_fam exopo 42.5 7.9E+02 0.017 30.9 18.4 50 128-177 211-264 (754)
125 PF03962 Mnd1: Mnd1 family; I 42.4 3.9E+02 0.0085 28.6 12.2 34 449-482 68-101 (188)
126 PF03962 Mnd1: Mnd1 family; I 42.2 3.8E+02 0.0083 28.7 12.1 94 488-582 72-165 (188)
127 PTZ00266 NIMA-related protein 42.1 2.7E+02 0.0058 37.0 12.9 15 70-84 91-105 (1021)
128 PF08614 ATG16: Autophagy prot 41.9 2.6E+02 0.0057 29.5 10.8 77 216-292 70-146 (194)
129 PF09789 DUF2353: Uncharacteri 41.9 6.4E+02 0.014 29.6 23.1 206 436-657 2-228 (319)
130 PF11932 DUF3450: Protein of u 41.7 5E+02 0.011 28.4 13.5 56 502-557 59-114 (251)
131 PRK10246 exonuclease subunit S 41.7 9.8E+02 0.021 31.7 72.5 148 107-254 164-331 (1047)
132 PF04871 Uso1_p115_C: Uso1 / p 40.8 4.2E+02 0.0091 27.2 14.3 37 472-508 78-114 (136)
133 PF07106 TBPIP: Tat binding pr 40.3 2.9E+02 0.0063 28.4 10.6 32 443-474 72-103 (169)
134 PF14988 DUF4515: Domain of un 40.1 5.3E+02 0.012 28.2 14.7 111 581-691 7-127 (206)
135 PF15066 CAGE1: Cancer-associa 40.0 8.3E+02 0.018 30.4 21.6 85 476-564 406-490 (527)
136 KOG0804 Cytoplasmic Zn-finger 39.4 7.3E+02 0.016 30.7 14.7 75 389-466 373-447 (493)
137 PF02841 GBP_C: Guanylate-bind 38.6 6.1E+02 0.013 28.5 15.4 9 126-134 41-49 (297)
138 KOG1103 Predicted coiled-coil 38.6 7.8E+02 0.017 29.6 15.8 27 818-844 420-447 (561)
139 PF04012 PspA_IM30: PspA/IM30 37.1 5.4E+02 0.012 27.3 15.9 63 27-89 2-68 (221)
140 TIGR02680 conserved hypothetic 36.5 1.3E+03 0.028 31.7 28.4 59 613-671 1085-1145(1353)
141 KOG0018 Structural maintenance 36.4 1.3E+03 0.027 31.5 56.9 221 492-732 652-901 (1141)
142 TIGR01069 mutS2 MutS2 family p 36.4 6.3E+02 0.014 32.5 14.6 33 140-172 136-168 (771)
143 PF10186 Atg14: UV radiation r 36.3 5.8E+02 0.013 27.5 16.7 14 490-503 138-151 (302)
144 PRK10698 phage shock protein P 36.3 6.1E+02 0.013 27.8 15.0 63 26-88 2-68 (222)
145 PF09787 Golgin_A5: Golgin sub 36.0 8.8E+02 0.019 29.5 28.6 18 668-685 410-427 (511)
146 PF06476 DUF1090: Protein of u 35.8 1.3E+02 0.0027 30.2 6.9 66 127-194 45-112 (115)
147 TIGR01069 mutS2 MutS2 family p 35.4 8E+02 0.017 31.6 15.3 100 255-354 483-582 (771)
148 PRK15422 septal ring assembly 34.9 2.4E+02 0.0053 27.2 8.2 55 465-519 12-66 (79)
149 PRK00409 recombination and DNA 34.4 5.6E+02 0.012 33.0 13.8 35 141-175 142-176 (782)
150 KOG4661 Hsp27-ERE-TATA-binding 34.3 5.1E+02 0.011 32.8 12.6 20 585-604 681-700 (940)
151 KOG1962 B-cell receptor-associ 34.2 2.9E+02 0.0063 30.8 9.9 57 504-571 156-212 (216)
152 KOG0995 Centromere-associated 32.8 1.1E+03 0.024 29.8 40.8 315 393-726 219-555 (581)
153 PF09728 Taxilin: Myosin-like 32.8 8.2E+02 0.018 28.2 36.5 65 643-707 230-308 (309)
154 PTZ00266 NIMA-related protein 32.4 4.6E+02 0.0099 35.0 12.7 12 717-728 528-539 (1021)
155 KOG1853 LIS1-interacting prote 32.0 8.6E+02 0.019 28.2 15.6 82 190-278 50-131 (333)
156 PRK11519 tyrosine kinase; Prov 31.2 1.1E+03 0.024 29.8 15.4 44 146-189 256-299 (719)
157 PF02841 GBP_C: Guanylate-bind 30.7 8.1E+02 0.018 27.5 13.8 8 424-431 199-206 (297)
158 COG1842 PspA Phage shock prote 30.3 8E+02 0.017 27.3 12.7 106 130-248 29-134 (225)
159 PF09789 DUF2353: Uncharacteri 29.7 9.8E+02 0.021 28.2 26.1 40 693-732 190-229 (319)
160 PF06428 Sec2p: GDP/GTP exchan 29.4 1.3E+02 0.0028 29.6 5.7 68 119-189 2-69 (100)
161 KOG3859 Septins (P-loop GTPase 29.3 5.1E+02 0.011 30.6 11.0 52 396-450 350-401 (406)
162 PF09744 Jnk-SapK_ap_N: JNK_SA 29.1 7.2E+02 0.016 26.4 12.6 71 382-458 80-157 (158)
163 PRK15422 septal ring assembly 29.1 5.4E+02 0.012 25.0 9.5 58 483-544 6-63 (79)
164 COG4372 Uncharacterized protei 28.9 1.2E+03 0.025 28.7 22.9 41 286-326 234-274 (499)
165 KOG1003 Actin filament-coating 28.7 8.6E+02 0.019 27.2 22.3 120 307-460 84-203 (205)
166 PF11068 YlqD: YlqD protein; 28.0 6.4E+02 0.014 26.0 10.5 73 641-729 18-90 (131)
167 PF10234 Cluap1: Clusterin-ass 27.7 4.9E+02 0.011 29.8 10.6 95 414-511 157-258 (267)
168 PRK10884 SH3 domain-containing 27.6 6.3E+02 0.014 27.7 11.0 22 490-511 144-165 (206)
169 KOG2891 Surface glycoprotein [ 27.4 1.1E+03 0.023 27.8 13.7 92 252-349 345-438 (445)
170 PRK09841 cryptic autophosphory 26.9 1.4E+03 0.03 29.0 17.0 35 285-319 351-385 (726)
171 KOG0980 Actin-binding protein 26.7 1.7E+03 0.036 29.9 27.4 236 116-359 349-603 (980)
172 PF05262 Borrelia_P83: Borreli 26.7 1.3E+03 0.028 28.6 16.2 35 249-283 186-220 (489)
173 smart00502 BBC B-Box C-termina 26.6 5.2E+02 0.011 23.9 11.4 38 591-628 49-86 (127)
174 PRK11281 hypothetical protein; 26.4 1.8E+03 0.039 30.1 27.3 122 218-339 126-262 (1113)
175 TIGR02977 phageshock_pspA phag 26.2 8.5E+02 0.019 26.3 12.5 40 208-247 94-133 (219)
176 cd07647 F-BAR_PSTPIP The F-BAR 25.9 8.9E+02 0.019 26.4 18.2 48 560-608 168-215 (239)
177 TIGR01010 BexC_CtrB_KpsE polys 25.1 8.5E+02 0.018 27.8 12.0 31 257-287 273-303 (362)
178 PF04156 IncA: IncA protein; 24.9 7.8E+02 0.017 25.4 15.1 28 477-504 94-121 (191)
179 PF04880 NUDE_C: NUDE protein, 24.4 91 0.002 33.2 4.0 16 497-512 29-44 (166)
180 PF10212 TTKRSYEDQ: Predicted 24.3 7.6E+02 0.016 30.9 11.9 112 193-310 403-514 (518)
181 smart00806 AIP3 Actin interact 24.1 1.4E+03 0.03 28.1 15.8 126 132-259 155-307 (426)
182 PF15254 CCDC14: Coiled-coil d 24.0 1.5E+03 0.032 30.0 14.5 96 514-616 442-537 (861)
183 KOG2350 Zn-finger protein join 24.0 96 0.0021 34.1 4.1 50 798-854 55-110 (221)
184 PF14992 TMCO5: TMCO5 family 23.6 1.2E+03 0.026 27.1 13.6 63 354-417 38-100 (280)
185 PF05622 HOOK: HOOK protein; 23.0 28 0.0006 43.2 0.0 51 129-187 271-321 (713)
186 PF05911 DUF869: Plant protein 22.6 1.8E+03 0.04 28.9 20.8 165 69-245 527-712 (769)
187 cd07672 F-BAR_PSTPIP2 The F-BA 22.1 1.1E+03 0.024 26.2 20.1 112 490-608 105-216 (240)
188 KOG0994 Extracellular matrix g 22.0 2.3E+03 0.05 29.8 34.7 156 238-420 1595-1750(1758)
189 PRK10884 SH3 domain-containing 21.9 6.2E+02 0.013 27.7 9.7 52 241-292 118-169 (206)
190 KOG0249 LAR-interacting protei 21.9 1.9E+03 0.042 28.9 16.6 62 364-425 96-159 (916)
191 PF10498 IFT57: Intra-flagella 21.7 1.2E+03 0.027 27.5 12.7 135 333-470 198-337 (359)
192 PF05529 Bap31: B-cell recepto 21.4 5.3E+02 0.011 27.0 8.8 35 488-522 157-191 (192)
193 KOG4657 Uncharacterized conser 21.3 1.3E+03 0.027 26.5 12.0 71 258-328 47-117 (246)
194 TIGR03545 conserved hypothetic 21.2 6E+02 0.013 31.7 10.4 90 381-472 165-262 (555)
195 KOG0962 DNA repair protein RAD 21.2 2.4E+03 0.051 29.7 70.6 136 603-751 992-1129(1294)
196 COG3074 Uncharacterized protei 20.7 7.6E+02 0.017 23.8 9.4 64 484-569 7-70 (79)
197 PF09730 BicD: Microtubule-ass 20.6 1.9E+03 0.042 28.5 17.2 61 506-574 121-181 (717)
198 PF12240 Angiomotin_C: Angiomo 20.6 1.2E+03 0.026 26.1 13.1 161 77-270 1-165 (205)
199 PF06103 DUF948: Bacterial pro 20.4 3.4E+02 0.0073 25.2 6.5 53 124-176 25-77 (90)
200 PF06818 Fez1: Fez1; InterPro 20.1 1.2E+03 0.027 25.9 15.7 30 489-521 135-164 (202)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=99.46 E-value=6e-07 Score=108.08 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=61.9
Q ss_pred HHHHhHHHHHHHHHhhhhhhh---hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhh
Q 001254 125 ECIASLEKAVHEIRAESAETK---VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARE 201 (1113)
Q Consensus 125 qCVadLEKAL~emr~E~AeiK---~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE 201 (1113)
+.+..++..+..+...+.+.. -....++.+.+.-+..++.+...+...+..+....+..+-+...+..++.+++...
T Consensus 251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l 330 (880)
T PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL 330 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444454444444444321 12233333333334444433333333333333333444444444555555555555
Q ss_pred hHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH
Q 001254 202 DDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 279 (1113)
Q Consensus 202 ~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie 279 (1113)
+.++.....+..+.+.+... +...++.+.+.++.+.....-+..-+..+......+..++.++++.+..++
T Consensus 331 ~~~~~~l~~~~~~~e~~~~~-------~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 331 EECRVAAQAHNEEAESLRED-------ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444434443333333222 333333333333334333333444444444444455555555555544444
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.33 E-value=2.3e-05 Score=101.77 Aligned_cols=368 Identities=21% Similarity=0.295 Sum_probs=214.9
Q ss_pred hHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHH---HhhhhhhhhhHHHHHhhhhhHHHhHHHHH----HhhhhHHHHh
Q 001254 342 HESALRVKQSEFEAELAIKYKLAEDEIEKKRRAW---ELRDLDLGQREESLLEREHDLEVQSRALV----DKEKDLVERS 414 (1113)
Q Consensus 342 h~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~---E~rEvel~h~Eekl~kREqaLe~k~~~lk----EKEkdl~~Ks 414 (1113)
..+.++..++++..+++....-+++-......-. .++|.++..+-..+.+.....+.+...+. +.=.++.+-+
T Consensus 1119 ~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~ql 1198 (1930)
T KOG0161|consen 1119 SRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQL 1198 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777776644333333 35666666655555555544444444443 2334455666
Q ss_pred hhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 001254 415 HLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEEL 494 (1113)
Q Consensus 415 k~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEI 494 (1113)
..++.....+......++.+-..|..+-..+...+.++++..-.++ .++.+.+.++.-...-++++..-.++|..|+
T Consensus 1199 e~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~ 1275 (1930)
T KOG0161|consen 1199 EQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNEN 1275 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6666666666666667777777777777777777777777776666 4566667777777777778888888899999
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 001254 495 DVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574 (1113)
Q Consensus 495 d~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEs 574 (1113)
..+=.|.++....+..+-..+..|+.+-+.+ +.++ ...+..+-++..-+. ++..+.+.++.+|.-+.+.
T Consensus 1276 ~~l~~~lee~e~~~~~~~r~~~~~~~qle~~---k~ql----e~e~r~k~~l~~~l~----~l~~e~~~l~e~leee~e~ 1344 (1930)
T KOG0161|consen 1276 EELSRQLEEAEAKLSALSRDKQALESQLEEL---KRQL----EEETREKSALENALR----QLEHELDLLREQLEEEQEA 1344 (1930)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888887766 3333 333444444443332 4555677777777766666
Q ss_pred hhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhH-------------------------
Q 001254 575 LNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS------------------------- 629 (1113)
Q Consensus 575 L~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~------------------------- 629 (1113)
...-.-. ..+-.-+=+.|-.|++....+-+-+++.-|+.|...++.-++.+|-.
T Consensus 1345 ~~~l~r~-lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~ 1423 (1930)
T KOG0161|consen 1345 KNELERK-LSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDL 1423 (1930)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5421100 11112233445555555555555555555555555555444444322
Q ss_pred ---------HHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHH
Q 001254 630 ---------FREREKAFEE---EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEEL 697 (1113)
Q Consensus 630 ---------L~EREk~FEe---ek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL 697 (1113)
|..+-+.|+. +-.+-...+....+.+.++..+...+..++...=.+.....+.+.++-..|...|.+|
T Consensus 1424 ~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl 1503 (1930)
T KOG0161|consen 1424 ERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDL 1503 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233321 1122334445555556666666666666665555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001254 698 MVQRQKLEEQRQLLHADREEIQAESER 724 (1113)
Q Consensus 698 ~~ls~KLk~QRE~~~~ERe~fl~~vEk 724 (1113)
..+-.-+-.-...+...+..+-..++.
T Consensus 1504 ~~~~~e~~k~v~elek~~r~le~e~~e 1530 (1930)
T KOG0161|consen 1504 EEQKDEGGKRVHELEKEKRRLEQEKEE 1530 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554444433
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=99.19 E-value=5.2e-05 Score=91.74 Aligned_cols=93 Identities=14% Similarity=0.207 Sum_probs=64.3
Q ss_pred HHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchh
Q 001254 109 ARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR 188 (1113)
Q Consensus 109 aeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s 188 (1113)
...|.+=+.+.+|+.. +-.+...+.+.+..+..++-...+++......+.. ....++...|..+...++++....+
T Consensus 148 p~~R~~ii~~l~~l~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i~ 223 (880)
T PRK02224 148 PSDRQDMIDDLLQLGK--LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIE 223 (880)
T ss_pred HHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999833 35567778888888888888888888888777766 2245566667777777776666666
Q ss_pred HHhhhhHHHhhhhhHHH
Q 001254 189 SAERKLQEVVAREDDLS 205 (1113)
Q Consensus 189 ~aeRKL~eVEaRE~~Lr 205 (1113)
.+...+..+...-..|.
T Consensus 224 ~~~~~~~~l~~~l~~l~ 240 (880)
T PRK02224 224 RYEEQREQARETRDEAD 240 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555555544444443
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=0.00013 Score=92.77 Aligned_cols=76 Identities=8% Similarity=0.024 Sum_probs=52.9
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh
Q 001254 127 IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED 202 (1113)
Q Consensus 127 VadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~ 202 (1113)
...|.+.++....+....+-..+..+..+..-+..+..+....+..+..+........+....+.++|..+..-++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~ 471 (1311)
T TIGR00606 396 HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD 471 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChH
Confidence 3446677777777777777777777777777777777777777777777766666666666666666665554444
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=0.0002 Score=91.23 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=39.6
Q ss_pred HHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Q 001254 170 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247 (1113)
Q Consensus 170 E~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q 247 (1113)
...+.+....+..++.....+++.+..++..-..++++.-....+..++...|. +-....+.+..|.+.+..|-..+
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-DVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHH
Confidence 444444444445555555555555555555555555555555555555555555 11244555555555555555555
No 6
>PRK03918 chromosome segregation protein; Provisional
Probab=98.92 E-value=0.00057 Score=82.60 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=23.2
Q ss_pred hhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhh
Q 001254 212 KADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNER 253 (1113)
Q Consensus 212 ~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqR 253 (1113)
..+....+..+..-...+.+|+..+.+.+..+...+.++.+.
T Consensus 244 ~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~ 285 (880)
T PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL 285 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445554545556666666666666666655555443
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.79 E-value=0.0015 Score=79.65 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=5.0
Q ss_pred HHHHHHHccC
Q 001254 27 IWKRLKEAGL 36 (1113)
Q Consensus 27 iWkr~~eaG~ 36 (1113)
+=..|..+|+
T Consensus 124 ~~~~l~~~~i 133 (1179)
T TIGR02168 124 IQDLFLDTGL 133 (1179)
T ss_pred HHHHHhccCC
Confidence 3444555554
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=98.64 E-value=0.0038 Score=75.67 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=9.1
Q ss_pred CCCCcHHHHHHHHHc
Q 001254 20 SPLSDESIWKRLKEA 34 (1113)
Q Consensus 20 ~~~~d~~iWkr~~ea 34 (1113)
+++|-..+...+.=|
T Consensus 32 nG~GKStil~ai~~~ 46 (880)
T PRK03918 32 NGSGKSSILEAILVG 46 (880)
T ss_pred CCCCHHHHHHHHHHH
Confidence 556667776665543
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.62 E-value=0.0046 Score=75.55 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=14.5
Q ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 001254 678 MDRQRRDREWAELNNSIEELMVQRQKLEE 706 (1113)
Q Consensus 678 ~~ke~le~e~aEm~kdIeeL~~ls~KLk~ 706 (1113)
.....+..+..++...++.|...-.++.+
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~ 1021 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEE 1021 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555554444
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.54 E-value=0.014 Score=77.13 Aligned_cols=282 Identities=22% Similarity=0.223 Sum_probs=147.7
Q ss_pred CChHHHhhhcHH--HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhh
Q 001254 36 LDEVSIKRRDKA--ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKRE 113 (1113)
Q Consensus 36 ~De~S~~rrD~~--aLia~IskLE~ElydYQyNMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKRE 113 (1113)
-+++-|..+|.. .|-..+.+-|+..=++--+|--++-|+-.++.....=+.-.++|++.+.+..+.-.-+=.++
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l---- 910 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKEL---- 910 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 356666666543 34556666677777888888888888888888887777788888888888776544321111
Q ss_pred HhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhh-----------------hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 001254 114 ESLKKTLGVEKECIASLEKAVHEIRAESAETK-----------------VAADSKFAEARCMVENAQKKFAEAEAKLHAA 176 (1113)
Q Consensus 114 EnLkKALgvEKqCVadLEKAL~emr~E~AeiK-----------------~tsesKLaEA~aLv~~~eeKslEvE~KL~aA 176 (1113)
..+..-+..+..=.++|++-.+++..++.+.+ .+.+.++.....=+.+ ..+..+||-.+
T Consensus 911 ~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~----~~e~~~kL~ke 986 (1930)
T KOG0161|consen 911 KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS----LDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 11112222222222334444444444433332 2222222222222222 22333344333
Q ss_pred hHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 001254 177 ESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDH 256 (1113)
Q Consensus 177 eak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~ 256 (1113)
...+-+++| .+.-.|+.-+..-..|.+....+.+..+..+..+..++....+.+|.....+-.|...|..+..-...
T Consensus 987 kk~lEe~~~---~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~ 1063 (1930)
T KOG0161|consen 987 KKELEERIR---ELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQ 1063 (1930)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333333322 22233444444445555555555566666666666666666666655555555555555555444455
Q ss_pred hHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHh
Q 001254 257 ILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 328 (1113)
Q Consensus 257 ~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~ 328 (1113)
..+-+..++.++-+|-.++.+++.....+....-.|..--+.+..-++++..-+..+.+-|+....|...|.
T Consensus 1064 ~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele 1135 (1930)
T KOG0161|consen 1064 KEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELE 1135 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666665554444443333333333444445555555555565665555555443
No 11
>PRK01156 chromosome segregation protein; Provisional
Probab=98.46 E-value=0.012 Score=72.35 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=22.3
Q ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001254 679 DRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 727 (1113)
Q Consensus 679 ~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ 727 (1113)
....+..+...++.+|..|...-..++++-+.+..+...+-.+++.++.
T Consensus 682 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~ 730 (895)
T PRK01156 682 NLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555554444444444444444444444444433
No 12
>PRK01156 chromosome segregation protein; Provisional
Probab=98.40 E-value=0.017 Score=71.06 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001254 653 EKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQL 710 (1113)
Q Consensus 653 E~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~ 710 (1113)
.....++..+..+..++..+...+..+...+.....++..+|+.|..--.++.++...
T Consensus 670 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~ 727 (895)
T PRK01156 670 KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES 727 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777777777777777777666544455444443
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.35 E-value=0.028 Score=71.66 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=58.3
Q ss_pred HHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHH---HhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhH
Q 001254 54 AKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELL---QKHDRASHLSAIAEARKREESLKKTLGVEKECIASL 130 (1113)
Q Consensus 54 skLE~ElydYQyNMGLLLiEkKEwtSK~EeLkqa~~eae~~---lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadL 130 (1113)
-.|..++..+++- +++.+-..+..+++++...+...+.- +......+.-.+...+.+-+.++..+..-.++...+
T Consensus 216 ~~l~~e~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~ 293 (1163)
T COG1196 216 QELKAELRELELA--LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293 (1163)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666664 45556667777777777777766633 334444455556666666666776666666777766
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 001254 131 EKAVHEIRAESAETKVAA 148 (1113)
Q Consensus 131 EKAL~emr~E~AeiK~ts 148 (1113)
...+.++-.+.+.++-..
T Consensus 294 ~~~~~~le~~~~~~~~~~ 311 (1163)
T COG1196 294 KEEIEELEGEISLLRERL 311 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666767666666665433
No 14
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.33 E-value=0.032 Score=71.47 Aligned_cols=207 Identities=14% Similarity=0.275 Sum_probs=149.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 001254 479 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLR 558 (1113)
Q Consensus 479 ER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK 558 (1113)
++.+|......|.++++.+..+...+.+..+.+..+.....+.-+.+...-+..+-+.+........+..-......++.
T Consensus 594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999988888888888888888888887777777766666666677777777
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 001254 559 QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE 638 (1113)
Q Consensus 559 ~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FE 638 (1113)
..+..-+..+...+..+..+-..|- .|+..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~~----~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQLK----QELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776665553 455566666666666666666666666666666666666666665555554
Q ss_pred H-------HHHHHhhh--hhh-HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHH
Q 001254 639 E-------EKMREFQQ--ISS-LKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE 689 (1113)
Q Consensus 639 e-------ek~~EL~~--IN~-lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aE 689 (1113)
+ ....+|.. |+- .-..++++++++..++.+++.-|..|..=+.=+...|..
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4 33344432 221 445567888888899999998888887766666666654
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.32 E-value=0.025 Score=69.84 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=10.3
Q ss_pred HHHHHHHHHccCChHH
Q 001254 25 ESIWKRLKEAGLDEVS 40 (1113)
Q Consensus 25 ~~iWkr~~eaG~De~S 40 (1113)
.++=..|...||+..+
T Consensus 120 ~~~~~~l~~~~~~~~~ 135 (1164)
T TIGR02169 120 SEIHDFLAAAGIYPEG 135 (1164)
T ss_pred HHHHHHHHHcCCCcCc
Confidence 3455568888986543
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.27 E-value=0.032 Score=68.87 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001254 695 EELMVQRQKLEEQRQLLHADREEIQAESERLK 726 (1113)
Q Consensus 695 eeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK 726 (1113)
+++...-..|.+|++.+...+..|...|+.|+
T Consensus 982 ~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169 982 EEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566666666666666666666665
No 17
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.92 E-value=0.23 Score=65.84 Aligned_cols=454 Identities=18% Similarity=0.217 Sum_probs=239.6
Q ss_pred HHhhhcHHHHHHHHHHHHHHHh-------hh---hhccchhheeh-------------hhhh---hhHHHHHHHHHHHHH
Q 001254 40 SIKRRDKAALIAYIAKLETEIF-------EH---QHHMGLLILEK-------------KELA---SKYEQIKASAEAAEL 93 (1113)
Q Consensus 40 S~~rrD~~aLia~IskLE~Ely-------dY---QyNMGLLLiEk-------------KEwt---SK~EeLkqa~~eae~ 93 (1113)
+-.+.+.+-|-.+++.|++.|- .| +|||..-+.+. ..++ |+..++++.+-..+.
T Consensus 861 ~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eq 940 (1822)
T KOG4674|consen 861 DSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQ 940 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888752 11 34666555443 2333 445566778888888
Q ss_pred HHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhh
Q 001254 94 LQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKL 173 (1113)
Q Consensus 94 ~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL 173 (1113)
+|.+....|=--..+++.+-+++.+-+.-=..=+..|++-.-.++.+++-.....+++++.+..-+.++..-...+....
T Consensus 941 sl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~ 1020 (1822)
T KOG4674|consen 941 SLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAA 1020 (1822)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999998888888888888877765544344456677777777777777778888888888887777766554444332
Q ss_pred hhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHH---HhchHHHHHHHHHHHHHHHHHhhhh
Q 001254 174 HAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRE---RQSLSDRKKILQQEHERLLDAQTLL 250 (1113)
Q Consensus 174 ~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~q---Re~L~eweKkLqe~eeRL~e~q~~L 250 (1113)
-.+++..+.+-.. |..++........-|+.++..- .+.|.....-+......+.+.....
T Consensus 1021 -------s~~~~~~~~~k~d----------l~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~ 1083 (1822)
T KOG4674|consen 1021 -------SQANEQIEDLQND----------LKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSR 1083 (1822)
T ss_pred -------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2333333333332 3333344444444444443221 2334444444444444444444444
Q ss_pred hhhhHhhHhhHHHHhHhHHHHH----HHhhcHH---HHHHHHhhhhhhhhHhHH--HhhhhHHHHHHHHHH--HHHhHHh
Q 001254 251 NEREDHILSKLQELSRKEKELE----ASRANVE---EKFKALNEEKSNLDLTLV--SLLKREEAVIEREAS--LQKKEQK 319 (1113)
Q Consensus 251 NqREe~~~e~~~~l~~kEkeLE----e~kkkie---~~~~~Lk~ke~dl~~rl~--~l~~rEee~~~~~~~--Le~KEkE 319 (1113)
-++..-.-+..+-...+++-|+ ...+.|. ..+..|...=+.+....+ .++.-..-...+... .--+|++
T Consensus 1084 ~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Eke 1163 (1822)
T KOG4674|consen 1084 ESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKE 1163 (1822)
T ss_pred HHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHH
Confidence 4443333333322222222222 2222221 122222222222222222 111111111111110 1124555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhH---------HHHHHHHHHHHH-hhhh------hhh
Q 001254 320 LLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA---------EDEIEKKRRAWE-LRDL------DLG 383 (1113)
Q Consensus 320 Ll~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~---------eeEle~K~~~~E-~rEv------el~ 383 (1113)
+..-+-.+.-+|...... +-+.+.....++...|...|.++ +.+|-.++..+. .+|- +..
T Consensus 1164 i~~tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~ 1239 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENE 1239 (1822)
T ss_pred HHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 555555555555433322 22333444444455555555555 344455555544 2222 223
Q ss_pred hhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHH-------HH-----HHHHHHHHHHHHH
Q 001254 384 QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKS-------LL-----QKEKEEVNIIKSD 451 (1113)
Q Consensus 384 h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~-------~L-----~~eKEel~~lK~d 451 (1113)
+-.+++ +.|..+.+++.-.=.-|..-++.|+..=....++=+.|+.+.. .| ..|+.++.+++.+
T Consensus 1240 ~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~e 1315 (1822)
T KOG4674|consen 1240 ANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSE 1315 (1822)
T ss_pred HHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 333333 3444444444433333333334444333333333333333222 12 2347788888888
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 001254 452 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 528 (1113)
Q Consensus 452 lEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK 528 (1113)
|......+++....|.+-... +.++|-++|...|..-..+..+.++...|+.-+-+.+.-|.-.-++
T Consensus 1316 i~~Lk~el~~ke~~~~el~~~----------~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1316 ISRLKEELEEKENLIAELKKE----------LNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887666666555443 4455578888888888888899999999999999999988876665
No 18
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.88 E-value=0.17 Score=63.10 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=40.1
Q ss_pred HHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhh------hhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhh
Q 001254 178 SLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKA------DCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLN 251 (1113)
Q Consensus 178 ak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~------E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LN 251 (1113)
..+++..+....+..+++.++.....+....--+.. +.+.....+....+.+..++.++......+.+.....+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 353 (908)
T COG0419 274 EELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN 353 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555544444333332 23333333344444444444444444444444444444
Q ss_pred hhhHhhHhhHHHH
Q 001254 252 EREDHILSKLQEL 264 (1113)
Q Consensus 252 qREe~~~e~~~~l 264 (1113)
+...-+.++...+
T Consensus 354 ~~~~~~~~~~~~l 366 (908)
T COG0419 354 ELAKLLEERLKEL 366 (908)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 19
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.02 Score=69.75 Aligned_cols=217 Identities=24% Similarity=0.338 Sum_probs=127.8
Q ss_pred hhhhhhHH---HHHHHHhhhHHHHHHHHHHHHHhhhhh---hhhhH--HHHHhhhhhHHHhHHHHHHhhhhHH-HHhhhh
Q 001254 347 RVKQSEFE---AELAIKYKLAEDEIEKKRRAWELRDLD---LGQRE--ESLLEREHDLEVQSRALVDKEKDLV-ERSHLL 417 (1113)
Q Consensus 347 ~~Kk~EFE---lElE~krKs~eeEle~K~~~~E~rEve---l~h~E--ekl~kREqaLe~k~~~lkEKEkdl~-~Ksk~L 417 (1113)
|.|+-.|+ +|||..|+-+++.-...+..++++|.+ -+.+| ++=.|++-+|++++++--+.|..-+ .+-+.+
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665 788888888888777777776666543 22333 3334455667777777666654332 223333
Q ss_pred HHHHhhhHHHHHH--hHHH-------HHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 001254 418 EEKENKLIAFEKE--ADLK-------KSLLQKEKEEVNIIK---SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSV 485 (1113)
Q Consensus 418 KEkEksLkaeEK~--le~e-------k~~L~~eKEel~~lK---~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lr 485 (1113)
..+|-.-+-.||. ++-+ .+|...+.+.|-.++ ..++--+..|..++.++..-.....+-.
T Consensus 396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~-------- 467 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI-------- 467 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc--------
Confidence 3333322222221 1111 112222333333332 2334444444555555544443333222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------------hh
Q 001254 486 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL-------------KD 552 (1113)
Q Consensus 486 LQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~-------------~~ 552 (1113)
..-|++|+.++-|.+..+.|.+.|+++.. |++.-+.+++-||..|..-+ ++
T Consensus 468 --tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 468 --TTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred --chHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 35689999999999999999999988754 34444445555555544322 56
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001254 553 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 587 (1113)
Q Consensus 553 E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMe 587 (1113)
+-+++...|+.++.+++-.++.|+-+.+|=.+.|.
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77788888899999999999999988888777766
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.78 E-value=0.29 Score=62.84 Aligned_cols=191 Identities=22% Similarity=0.278 Sum_probs=103.5
Q ss_pred cHHHHHHHHHccCCh--------------HHHhhhcHHHHHHHH----------HHHHHHHhhhhhccchhheehhhhhh
Q 001254 24 DESIWKRLKEAGLDE--------------VSIKRRDKAALIAYI----------AKLETEIFEHQHHMGLLILEKKELAS 79 (1113)
Q Consensus 24 d~~iWkr~~eaG~De--------------~S~~rrD~~aLia~I----------skLE~ElydYQyNMGLLLiEkKEwtS 79 (1113)
-.||=.-|...|++. .+++..++..|++-+ .+.+..|-.=+=|+--+=.-..+...
T Consensus 121 ~~dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~ 200 (1163)
T COG1196 121 LKDIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEK 200 (1163)
T ss_pred HHHHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888743 345677777777644 35566777778888888888888889
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhh----H---HHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhh
Q 001254 80 KYEQIKASAEAAELLQKHDRASHLS----A---IAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKF 152 (1113)
Q Consensus 80 K~EeLkqa~~eae~~lKREqaAhl~----A---LsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKL 152 (1113)
+++.|+.....|+..+.-...-... . +....+.-+.+..+++-=..=+.++...+.+.-.++. ....++
T Consensus 201 ~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~----~~~~~~ 276 (1163)
T COG1196 201 QLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIE----ELKSEL 276 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 9998888888887765543322222 2 2222222333333333222222223333333222222 233455
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhH
Q 001254 153 AEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEK 218 (1113)
Q Consensus 153 aEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~ 218 (1113)
.+...-+...+.....+-.++...+...+-+..........+.+...+...+.-.+..+.++....
T Consensus 277 ~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1163)
T COG1196 277 EELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER 342 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555455555555555555555555555555555555555554444444444
No 21
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.67 E-value=0.34 Score=60.31 Aligned_cols=323 Identities=19% Similarity=0.272 Sum_probs=192.4
Q ss_pred hHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh-----hhh---HHHHHHHHHhHHHHhhhhhhH-------HHHHHH
Q 001254 295 TLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS-----KES---NEIQKIIANHESALRVKQSEF-------EAELAI 359 (1113)
Q Consensus 295 rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~a-----RE~---~EIQKLldeh~a~L~~Kk~EF-------ElElE~ 359 (1113)
....+.-.|-.+..++..|+.+|++...+-+.|-- ++. ..+|++|+.- +++...| |.|+..
T Consensus 181 ~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K----d~ki~~lEr~l~~le~Ei~~ 256 (775)
T PF10174_consen 181 ALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK----DTKIASLERMLRDLEDEIYR 256 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33344455666777788888899888666443322 222 3568887764 3444454 555554
Q ss_pred HhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHH
Q 001254 360 KYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQ 439 (1113)
Q Consensus 360 krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~ 439 (1113)
.+..++---. -+.-..++++.........|-. ++.-.=.|..+.-++.+...-|.-....-.....-|+.=+..|-
T Consensus 257 L~~~~~~~~~--~r~~~~k~le~~~s~~~~mK~k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~ 332 (775)
T PF10174_consen 257 LRSRGELSEA--DRDRLDKQLEVYKSHSLAMKSK--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLR 332 (775)
T ss_pred HHhccccccc--chHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4443321111 1222333344444444443321 33334445566666666666666666666666777777788888
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001254 440 KEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 519 (1113)
Q Consensus 440 ~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE 519 (1113)
+--.....|.+|++-++..++..-.++...+..+..+++|.+-+..==.+|+..+|..=..-..|.+.+|.|...-..=+
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd 412 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD 412 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999887665444455666666666566666666555543322111
Q ss_pred HHHhhhHHHHHHHH------------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001254 520 AEWEMIDEKREELR------------KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 587 (1113)
Q Consensus 520 ~EWE~LDEKRael~------------KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMe 587 (1113)
..|++-++.|. -.++.-..+++.+..-+...+++.-.++..--+.|++++..+...-++|-..+
T Consensus 413 ---~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL- 488 (775)
T PF10174_consen 413 ---RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL- 488 (775)
T ss_pred ---HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-
Confidence 11222222222 23333333444444444444444444444444667777777777777777655
Q ss_pred hhhhhHHHHHHHHHHHhhhhhHhhhhh---hHHHHHHHHHHHHhH
Q 001254 588 HEHSEWFTKIQQERADFLLGIEMQKRD---LENCIEKRREELESS 629 (1113)
Q Consensus 588 hErs~~~eKiq~Erad~l~d~Emqkre---LE~~iqkRqEEiE~~ 629 (1113)
||+..-+.-++.+-+.+.-+.+-+..+ |++.+++.++++++-
T Consensus 489 sEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl 533 (775)
T PF10174_consen 489 SEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKL 533 (775)
T ss_pred HHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHH
Confidence 677777777777777776666555544 446666666666543
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.65 E-value=0.28 Score=58.86 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=39.7
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001254 684 DREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 727 (1113)
Q Consensus 684 e~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ 727 (1113)
.=+.+|-++.|.+|+.-=+-+++-.|+|..++-.++..|++|..
T Consensus 409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~ 452 (546)
T PF07888_consen 409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999999999999999999999998863
No 23
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.58 E-value=0.45 Score=59.48 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=28.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001254 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 539 (1113)
Q Consensus 476 teeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I 539 (1113)
..++...+..+..+|+...+.++.-. ....+.++++..-..+...|..|.+.-..++......
T Consensus 557 l~~e~~~le~~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 557 LKEELRQLEDRLQELKELLEELRLLR-TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333344444444444444444333 2224444444444444455555555555554444444
No 24
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.44 E-value=3.1e-05 Score=95.11 Aligned_cols=509 Identities=21% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHH-------HHhhhhhhH
Q 001254 106 IAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEA-------EAKLHAAES 178 (1113)
Q Consensus 106 LsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEv-------E~KL~aAea 178 (1113)
|-+..-|=+.|.--|.-|++--+--||+-++|..|..+++---+.......+.++-.-++-.++ |.--.+-++
T Consensus 41 ~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~ 120 (859)
T PF01576_consen 41 IKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEA 120 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455556666666666666777777777777766444444333333333322222221 222234456
Q ss_pred HHHHHhcchhHHhhhh----HHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001254 179 LQAEANRYHRSAERKL----QEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNERE 254 (1113)
Q Consensus 179 k~AEa~Rk~s~aeRKL----~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqRE 254 (1113)
.+++.-++|+.+--.| ..+.---..|-+.+-.|..|......++..-=.....-+|.....+.-|.+.+.-+..-+
T Consensus 121 ~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~e 200 (859)
T PF01576_consen 121 TLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESE 200 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 6677777775543222 222222233334444444444444444433333334445666666666666666666666
Q ss_pred HhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHH
Q 001254 255 DHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE 334 (1113)
Q Consensus 255 e~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~E 334 (1113)
..+++.......++.++.++...++.. ...+..|+- ....-+..|..+...|..-
T Consensus 201 r~~~el~~~k~kL~~E~~eL~~qLee~-----------e~~~~~l~r----------~k~~L~~qLeelk~~leeE---- 255 (859)
T PF01576_consen 201 RQRNELTEQKAKLQSENSELTRQLEEA-----------ESQLSQLQR----------EKSSLESQLEELKRQLEEE---- 255 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH----------HHHHHHHHHHhhHHHHHhH----
Confidence 666655555555555555555544333 222222211 0011122233333222211
Q ss_pred HHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHH---HHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHH
Q 001254 335 IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRA---WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 411 (1113)
Q Consensus 335 IQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~---~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~ 411 (1113)
+ -.+..|..+.+..+.+++..+..++++-++|... +..-..+|..+-.+ -+.......+.|.+--+.|.
T Consensus 256 t-----r~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K---~e~e~~~~~EelEeaKKkL~ 327 (859)
T PF01576_consen 256 T-----RAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKK---YEEEAEQRTEELEEAKKKLE 327 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h-----hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH---HHHHhhhhHHHHHHHHHHHH
Confidence 0 1345667778888888888888888887776542 22333333333222 23344444556666667777
Q ss_pred HHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 001254 412 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS---SLDEKKKQVNCAKDKLEAMKSEAGELSVLEI 488 (1113)
Q Consensus 412 ~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a---~~e~q~~qi~ee~E~LkiteeER~E~lrLQs 488 (1113)
.++..+.+.-..+.+.--.|+.-+..|+.+-+.+.. +|++..+ .++....+++.....++.- -.
T Consensus 328 ~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~~~~~LeKKqr~fDk~l~e~k~~----------~~ 394 (859)
T PF01576_consen 328 RKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQAAAAELEKKQRKFDKQLAEWKAK----------VE 394 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------HH
Confidence 777777777777777777787778888877666554 5555444 5566666666544443322 13
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 001254 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH 568 (1113)
Q Consensus 489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~ 568 (1113)
.+..+.|..-.....+..++-.|+.+.......|+.+.-....|+.|+.++..+.-...+-++ +-++.+.....-.+.+
T Consensus 395 ~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr~LE~e~~El 473 (859)
T PF01576_consen 395 ELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKRRLEQEKEEL 473 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHHHHHHHHHHH
Confidence 556677777777777788888888888777777777777777777777777655443333322 2222222111111111
Q ss_pred HhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001254 569 KRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQI 648 (1113)
Q Consensus 569 krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~I 648 (1113)
+..++-+. +-+...|..+.-|+..|+.-+-++++.|.+|+..|++.+..=...|
T Consensus 474 ~~~leE~E--------------------------~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l 527 (859)
T PF01576_consen 474 QEQLEEAE--------------------------DALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQL 527 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHH
Confidence 11222111 2223455567778888888899999999999999998776544444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHH
Q 001254 649 SSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELM 698 (1113)
Q Consensus 649 N~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~ 698 (1113)
-+|..-+..| -+.|.++.-.|++++.+..+|.-.++..+
T Consensus 528 ~~le~~LE~E-----------~k~r~~~~r~kkKLE~~l~eLe~~ld~~n 566 (859)
T PF01576_consen 528 ESLEAELEEE-----------RKERAEALREKKKLESDLNELEIQLDHAN 566 (859)
T ss_dssp --------------------------------------------------
T ss_pred HHHHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443333222 22344455555555555555544444333
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.09 E-value=1.2 Score=53.81 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001254 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 567 (1113)
Q Consensus 488 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~ 567 (1113)
+.+-+|...+.+..+..-.++.+|+.++.+-+. .|+|+|.+=++=...|+.++..= +++-+|..|.-.|..++=.-
T Consensus 353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~lrv 428 (546)
T PF07888_consen 353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSLRV 428 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444567788888887776 68899988777777777655443 56778888887776665555
Q ss_pred HHhhhhhhhhhHHHHHHhhh
Q 001254 568 HKRDVDSLNREREEFMNKMV 587 (1113)
Q Consensus 568 ~krelEsL~~ekEsF~~kMe 587 (1113)
.+.+-|.|..++-+.|.-|.
T Consensus 429 ~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 429 AQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444443
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.95 E-value=2 Score=55.10 Aligned_cols=106 Identities=25% Similarity=0.250 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001254 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL-EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1113)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~L-kiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 521 (1113)
+++...-..+.+.+.....-.++|....+.+ .-+..++.+..---..|++||+++..|...|-.|.++++..-..=+.|
T Consensus 358 ~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee 437 (1074)
T KOG0250|consen 358 EEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEE 437 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333333444444444444444444444444 444555555444445566666666666666666666666655555555
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001254 522 WEMIDEKREELRKEAERVAVERVVVSK 548 (1113)
Q Consensus 522 WE~LDEKRael~KEa~~I~eEre~lek 548 (1113)
-+.+..+...|.+-...+..+=..+.+
T Consensus 438 ~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 438 KEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555655555666655555544443333
No 27
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.85 E-value=0.91 Score=48.69 Aligned_cols=178 Identities=19% Similarity=0.230 Sum_probs=86.1
Q ss_pred hchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHH
Q 001254 227 QSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 306 (1113)
Q Consensus 227 e~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~ 306 (1113)
+.|..-..+|.+.+.++-+..+.+..=|.+....+..+..++..|.+++...+..-..+.+-...|...-..|.--|.-+
T Consensus 57 erL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~ 136 (237)
T PF00261_consen 57 ERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERA 136 (237)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555556666666665555555554444444444444444444444444
Q ss_pred HHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhH
Q 001254 307 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQRE 386 (1113)
Q Consensus 307 ~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~E 386 (1113)
+..++.+..-|.+|..+-..|-+=|-.+.+ -.+=+-.++.+-+.|..-|..=..-++--|..+...|
T Consensus 137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~~-------------~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le 203 (237)
T PF00261_consen 137 EAAESKIKELEEELKSVGNNLKSLEASEEK-------------ASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLE 203 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHHHHHHHHHHhhhhhhh-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444332221110 0111122222223333333333344444455566666
Q ss_pred HHHHhhhhhHHHhHHHHHHhhhhHHHHhhhh
Q 001254 387 ESLLEREHDLEVQSRALVDKEKDLVERSHLL 417 (1113)
Q Consensus 387 ekl~kREqaLe~k~~~lkEKEkdl~~Ksk~L 417 (1113)
..+..-+-.|..--.+.+....+|+.-+..|
T Consensus 204 ~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 204 KEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666666666555443
No 28
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.75 E-value=0.65 Score=49.74 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhh
Q 001254 233 KKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD 293 (1113)
Q Consensus 233 eKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~ 293 (1113)
.-++.+.+.+|-+....+..-+.+.-+..+.|...+.+|+.+...++..-..+.+-+..|.
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~ 151 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELK 151 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Confidence 3344444455555555555555555555555555555665555555554444444444433
No 29
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.46 E-value=4.1 Score=51.19 Aligned_cols=243 Identities=22% Similarity=0.212 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHH
Q 001254 48 ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECI 127 (1113)
Q Consensus 48 aLia~IskLE~ElydYQyNMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCV 127 (1113)
.+..-|..|..|| --|..|+-|.-+...-.+-|+.+.. ++-++.-+-|=++-|=-+..| +
T Consensus 71 ~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~E------------------l 130 (775)
T PF10174_consen 71 KAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRE------------------L 130 (775)
T ss_pred HHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHH------------------H
Confidence 4455566666666 6666666665555445555555555 444433222211111111111 1
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHH
Q 001254 128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR 207 (1113)
Q Consensus 128 adLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRe 207 (1113)
..|-+.|-+|+..+.-.+.+-+..-.+...|..-++.|-..++ +..-.+.+.+.+.+.+++-..|+--
T Consensus 131 ~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~------------~~~~~~~~~~~~~~~e~~~~~le~l 198 (775)
T PF10174_consen 131 ERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAE------------AEEEDNEALRRIREAEARIMRLESL 198 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc------------chhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2244677778888888888888877777777777655544431 1111122333333333333222211
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHH-HHH-HHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHH
Q 001254 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHE-RLL-DAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 285 (1113)
Q Consensus 208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~ee-RL~-e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~L 285 (1113)
.+.++.....-|+ .....++-..+ ... -.|..|...+..|.+..+.+..++-++..++..++....--
T Consensus 199 -------le~~e~~~~~~r~---~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r 268 (775)
T PF10174_consen 199 -------LERKEKEHMEARE---QLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADR 268 (775)
T ss_pred -------HHHHHHHhhhhhH---HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 1111111111111 00000100000 000 23555666666666666666666666665555544332211
Q ss_pred hhhhhhhhH-hHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001254 286 NEEKSNLDL-TLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 333 (1113)
Q Consensus 286 k~ke~dl~~-rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~ 333 (1113)
......+.. +...+..+-+ ++..+..|..|..||..++-+|......
T Consensus 269 ~~~~k~le~~~s~~~~mK~k-~d~~~~eL~rk~~E~~~~qt~l~~~~~~ 316 (775)
T PF10174_consen 269 DRLDKQLEVYKSHSLAMKSK-MDRLKLELSRKKSELEALQTRLETLEEQ 316 (775)
T ss_pred HHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111011111 1111111111 6777777888888888888888766643
No 30
>PRK11637 AmiB activator; Provisional
Probab=96.35 E-value=1.5 Score=50.45 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=20.3
Q ss_pred hhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhH
Q 001254 299 LLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHE 343 (1113)
Q Consensus 299 l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~ 343 (1113)
|...+.++......+...+.+|..++.+|..+...-=+.+-+-+.
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555555555444433333333333
No 31
>PRK12704 phosphodiesterase; Provisional
Probab=96.34 E-value=0.15 Score=60.50 Aligned_cols=77 Identities=25% Similarity=0.325 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001254 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429 (1113)
Q Consensus 350 k~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK 429 (1113)
+.+++.|+...|..++.++..+ +.++..+|..|.+|+..|+.+.+.|..++++|..+-+.|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555443 444556666677777777777777777777777776666666666665555
Q ss_pred HhHH
Q 001254 430 EADL 433 (1113)
Q Consensus 430 ~le~ 433 (1113)
+++.
T Consensus 132 ~~~~ 135 (520)
T PRK12704 132 ELEE 135 (520)
T ss_pred HHHH
Confidence 5543
No 32
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.33 E-value=2.1 Score=46.61 Aligned_cols=232 Identities=21% Similarity=0.340 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHH
Q 001254 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDSLRQERDAMR 565 (1113)
Q Consensus 489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek---~~~~E~erLK~EK~~~r 565 (1113)
.|...|+.+-.++--|..+.+.|+.+...|...|+..-..+..++.+...+...-..... .+.+.-..|+.|..-++
T Consensus 58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 58 ELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 445677777777777777788888888888888887777777776666555433332222 23456677888888888
Q ss_pred HHHHhhhhhhhhhHH-HHHHhhhhh-hhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001254 566 DQHKRDVDSLNRERE-EFMNKMVHE-HSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR 643 (1113)
Q Consensus 566 ~~~krelEsL~~ekE-sF~~kMehE-rs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~ 643 (1113)
..|..++..|...-. .+-..|..- ...+..-+..=| ...+..+.+-+.++|..++-+-......-..
T Consensus 138 ~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR-----------~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~ 206 (312)
T PF00038_consen 138 QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR-----------AQYEEIAQKNREELEEWYQSKLEELRQQSEK 206 (312)
T ss_dssp HHHHHHHHTTSTT----------------HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccccceeecccccccchhhhhhHH-----------HHHHHHHhhhhhhhhhhcccccccccccccc
Confidence 888888888876553 222222210 122222233333 3444445555555555555544444333333
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001254 644 EFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE-LMVQRQKLEEQRQLLHADREEIQAES 722 (1113)
Q Consensus 644 EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIee-L~~ls~KLk~QRE~~~~ERe~fl~~v 722 (1113)
--..+.+ +..|+-.++..+..|..+-.-+......|+.+..++....+. +......+......+..=|..+-.++
T Consensus 207 ~~~~~~~----~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 207 SSEELES----AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccch----hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 2222222 233444444444444444444444455555555555433332 22233334444444444455555555
Q ss_pred HHhhhhhhhHhHH
Q 001254 723 ERLKKLEDLKIAV 735 (1113)
Q Consensus 723 EklK~ckncg~~~ 735 (1113)
..+..+-|-+...
T Consensus 283 ~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 283 REYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 5555555555444
No 33
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.31 E-value=7.5 Score=52.64 Aligned_cols=453 Identities=20% Similarity=0.195 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhheehhhhh----------------hhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001254 47 AALIAYIAKLETEIFEHQHHMGLLILEKKELA----------------SKYEQIKASAEAAELLQKHDRASHLSAIAEAR 110 (1113)
Q Consensus 47 ~aLia~IskLE~ElydYQyNMGLLLiEkKEwt----------------SK~EeLkqa~~eae~~lKREqaAhl~ALsEae 110 (1113)
..+-++|+.|++++-+---+.--|+=|+..|. |..++..+... .+..+..-+...=+...|..
T Consensus 575 ~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~-~e~~l~qLe~~le~~~~E~~ 653 (1822)
T KOG4674|consen 575 NEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRA-KEKRLRQLENELESYKKEKR 653 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchh-HHHHHHHHHHHHHHHHHHHH
Confidence 35668889999988776666667777777662 11111111111 11111222222222233333
Q ss_pred HhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhh---hhhhhhhHHHHHHH-------HHhhhhHHHHHhhhhhhHHH
Q 001254 111 KREESLKKTLGVEKECIASLEKAVHEIRAESAETKV---AADSKFAEARCMVE-------NAQKKFAEAEAKLHAAESLQ 180 (1113)
Q Consensus 111 KREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~---tsesKLaEA~aLv~-------~~eeKslEvE~KL~aAeak~ 180 (1113)
++...|.+. +.+|.+-..+||.+.-..+. .|--|+.-++--|+ .+.+....+..=++..+...
T Consensus 654 ~~~~~l~e~-------~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~ 726 (1822)
T KOG4674|consen 654 ENLKKLQED-------FDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTV 726 (1822)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 23444444455544433332 12223333333333 33344444555677777777
Q ss_pred HHHhcchhHHhhhhHHHhhhhhHHHHHHhHhh-------hhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhh
Q 001254 181 AEANRYHRSAERKLQEVVAREDDLSRRIASFK-------ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNER 253 (1113)
Q Consensus 181 AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~-------~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqR 253 (1113)
..++--...+..++.-+++.=+.|+.+-..|. .|.+++....+.++..|...+-.....++....++.-+++
T Consensus 727 ~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~- 805 (1822)
T KOG4674|consen 727 HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCES- 805 (1822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 88888888888999999999888888877665 3455555555555555555555444444444444444442
Q ss_pred hHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHH----HhhhhHHHHHHHH-------HHHHHhHHhHHH
Q 001254 254 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV----SLLKREEAVIERE-------ASLQKKEQKLLV 322 (1113)
Q Consensus 254 Ee~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~----~l~~rEee~~~~~-------~~Le~KEkELl~ 322 (1113)
.+..++.+|..++++++....-++.-..+++.-+. .+..-....+.+. ..+.+.|..+..
T Consensus 806 ---------~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~e 876 (1822)
T KOG4674|consen 806 ---------RIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSE 876 (1822)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555555665555555544444333333222 2222223333333 333344444444
Q ss_pred HHHHHhhhhhHHHHHHHHHh---HHHHhhhhhhHHHHHHHH---hhhHHHHHH---HHHHHHHhhhhhhhhhHHHHHhhh
Q 001254 323 SQETLASKESNEIQKIIANH---ESALRVKQSEFEAELAIK---YKLAEDEIE---KKRRAWELRDLDLGQREESLLERE 393 (1113)
Q Consensus 323 leEKL~aRE~~EIQKLldeh---~a~L~~Kk~EFElElE~k---rKs~eeEle---~K~~~~E~rEvel~h~Eekl~kRE 393 (1113)
|..+|. .+.++.+..+. .....-+-..|..++++- +..|-.... +=-.....-|.-|..+...+.+--
T Consensus 877 L~k~l~---~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~ 953 (1822)
T KOG4674|consen 877 LEKRLK---SAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR 953 (1822)
T ss_pred HHHHHH---HhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444442 35666666665 233333334466665554 333322221 111222233333333434444433
Q ss_pred hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH--------HHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001254 394 HDLEVQSRALVDKEKDLVERSHLLEEKENKLI--------AFEKE---ADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEK 462 (1113)
Q Consensus 394 qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLk--------aeEK~---le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q 462 (1113)
+.++.+.+.+..+--.|+.++..|+..=..|. -.+++ +..+..-++.+...+.....+..+....+...
T Consensus 954 ~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~d 1033 (1822)
T KOG4674|consen 954 LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQND 1033 (1822)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333332211111 11221 12223333444444444444333333333333
Q ss_pred HHHHHHHHhhhhhhhhhh----hhHH---HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 001254 463 KKQVNCAKDKLEAMKSEA----GELS---VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 523 (1113)
Q Consensus 463 ~~qi~ee~E~LkiteeER----~E~l---rLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE 523 (1113)
+.. ..+.+....+.- ..|. ..=.+|+++..+|-.+-..|-+.++-+...-..|++-|.
T Consensus 1034 l~~---~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~ 1098 (1822)
T KOG4674|consen 1034 LKT---ETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWS 1098 (1822)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchH
Confidence 222 222222222211 1111 122456777777777777788888877778888888885
No 34
>PRK11637 AmiB activator; Provisional
Probab=96.28 E-value=3.1 Score=47.96 Aligned_cols=26 Identities=15% Similarity=0.394 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhhhH
Q 001254 591 SEWFTKIQQERADFLLGIEMQKRDLE 616 (1113)
Q Consensus 591 s~~~eKiq~Erad~l~d~EmqkreLE 616 (1113)
..++..+.+-+.+++..|.-.+..|+
T Consensus 158 ~~~l~~i~~~d~~~l~~l~~~~~~L~ 183 (428)
T PRK11637 158 LAYFGYLNQARQETIAELKQTREELA 183 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666555
No 35
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.20 E-value=6.8 Score=51.07 Aligned_cols=86 Identities=12% Similarity=0.187 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH----hhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001254 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW----EMID-EKREELRKEAERVAVERVVVSKSLKDERDSLRQERDA 563 (1113)
Q Consensus 489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW----E~LD-EKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~ 563 (1113)
.+++....+..+...+..+...+++++..|..+- -.+. +..+..+--...+..+-+.+..-+.......+.++..
T Consensus 675 ~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~ 754 (1201)
T PF12128_consen 675 AKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKE 754 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666666666666555432 2222 4444445555566666677777777777777777777
Q ss_pred HHHHHHhhhhh
Q 001254 564 MRDQHKRDVDS 574 (1113)
Q Consensus 564 ~r~~~krelEs 574 (1113)
++.+|..+|.+
T Consensus 755 le~~~~~eL~~ 765 (1201)
T PF12128_consen 755 LEQQYNQELAG 765 (1201)
T ss_pred HHHHHHHHHHh
Confidence 88777776644
No 36
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.16 E-value=6.4 Score=50.43 Aligned_cols=300 Identities=23% Similarity=0.296 Sum_probs=177.2
Q ss_pred HHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHH---HH
Q 001254 205 SRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE---EK 281 (1113)
Q Consensus 205 rRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie---~~ 281 (1113)
|++.++.--|-+-+...|..-=+.+.++=+.|.+..+.|..-|.+=++| +.-+++.-.++|-++...++ ..
T Consensus 172 reeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~r------r~lEYtiYdrEl~E~~~~l~~le~~ 245 (1200)
T KOG0964|consen 172 REESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKER------RSLEYTIYDRELNEINGELERLEED 245 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH------hhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3455666677777888888877888888888888888888877765555 33445566666666665543 33
Q ss_pred HHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHH---HHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHH
Q 001254 282 FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE---TLASKESNEIQKIIANHESALRVKQSEFEAELA 358 (1113)
Q Consensus 282 ~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leE---KL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE 358 (1113)
+.+.-++-+++. ..+..++.+.......+..-|..|..|-+ .+.+++..-+++ ++.|..+..+|--+++
T Consensus 246 r~~~~e~s~~~~---~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~-----kt~lel~~kdlq~~i~ 317 (1200)
T KOG0964|consen 246 RSSAPEESEQYI---DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKK-----KTKLELKIKDLQDQIT 317 (1200)
T ss_pred HhccchhhhhHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhHHHHHHhh
Confidence 334444433333 33445555666666666555555555433 445555544443 3344444444444433
Q ss_pred HH---hhhHHHHHHHHHHHHHhhhhhhhhhH---HHHHhhhhhHHHhHHHHHHhhhhHHHH------hhhhHHHHhhhHH
Q 001254 359 IK---YKLAEDEIEKKRRAWELRDLDLGQRE---ESLLEREHDLEVQSRALVDKEKDLVER------SHLLEEKENKLIA 426 (1113)
Q Consensus 359 ~k---rKs~eeEle~K~~~~E~rEvel~h~E---ekl~kREqaLe~k~~~lkEKEkdl~~K------sk~LKEkEksLka 426 (1113)
-- |++.-..++.=....+.++.++...+ ..+...|..+...+..+..+..||-+| ++.-+++++=|+.
T Consensus 318 ~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ 397 (1200)
T KOG0964|consen 318 GNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRS 397 (1200)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHH
Confidence 21 11111111111122222222222222 123333444444455555555555443 3444667777776
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 001254 427 FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMV 506 (1113)
Q Consensus 427 eEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~Llk 506 (1113)
+=..| +.-+..-++..+.+.-|++-+...+++...+|..-...+.-++..-.++...-..||++.|..-.....|--
T Consensus 398 ei~~l---~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR 474 (1200)
T KOG0964|consen 398 EIEKL---KRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR 474 (1200)
T ss_pred HHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 777888888888888888888888888777777777777777777788888888888888877666666666
Q ss_pred hhHHHHHHHHHHHHH
Q 001254 507 ETDKLQLEKAKFEAE 521 (1113)
Q Consensus 507 Eae~Lk~eKekFE~E 521 (1113)
|.-.|+..-++.+-+
T Consensus 475 EE~~l~~~i~~~~~d 489 (1200)
T KOG0964|consen 475 EEKKLRSLIANLEED 489 (1200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666676666655543
No 37
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.93 E-value=0.33 Score=57.75 Aligned_cols=75 Identities=28% Similarity=0.319 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001254 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429 (1113)
Q Consensus 350 k~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK 429 (1113)
+.+++.|+...|..++.+++.+ +.++..+|..|.+|+..|+.+.+.|..+++.|+.+.+.|..+++.+....+
T Consensus 53 ~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~ 125 (514)
T TIGR03319 53 LLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555444 444555566666666666666666666666666666666666666555555
Q ss_pred Hh
Q 001254 430 EA 431 (1113)
Q Consensus 430 ~l 431 (1113)
++
T Consensus 126 e~ 127 (514)
T TIGR03319 126 EL 127 (514)
T ss_pred HH
Confidence 44
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.77 E-value=2.1 Score=48.10 Aligned_cols=166 Identities=20% Similarity=0.169 Sum_probs=116.2
Q ss_pred HHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 001254 397 EVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAM 476 (1113)
Q Consensus 397 e~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lkit 476 (1113)
=+...++..|..=++=+++.+..--..|...-..|......|.+..+.+..+...+....+.+..+...+...... +.
T Consensus 127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~~ 204 (325)
T PF08317_consen 127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--IE 204 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh
Confidence 3444555556666666666666665555555555555555555555555555555555555555555544444333 22
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001254 477 KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDS 556 (1113)
Q Consensus 477 eeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~er 556 (1113)
.-+..++ ..||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=..|-.+
T Consensus 205 ~~D~~eL----~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~ 280 (325)
T PF08317_consen 205 SCDQEEL----EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKR 280 (325)
T ss_pred hcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 2334444 346677777777788888888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 001254 557 LRQERDAMRDQH 568 (1113)
Q Consensus 557 LK~EK~~~r~~~ 568 (1113)
||..-+.++...
T Consensus 281 Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 281 LKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 39
>PRK00106 hypothetical protein; Provisional
Probab=95.69 E-value=0.83 Score=54.93 Aligned_cols=75 Identities=27% Similarity=0.297 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001254 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429 (1113)
Q Consensus 350 k~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK 429 (1113)
+.+++.|+...|..++.++...+.. +..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.+....+
T Consensus 74 ~lEaeeEi~~~R~ElEkel~eEr~r-------L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~ 146 (535)
T PRK00106 74 LLEAKEEARKYREEIEQEFKSERQE-------LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREE 146 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554444333 444455555555555555555555555555555555555555544444
Q ss_pred Hh
Q 001254 430 EA 431 (1113)
Q Consensus 430 ~l 431 (1113)
++
T Consensus 147 ~~ 148 (535)
T PRK00106 147 QV 148 (535)
T ss_pred HH
Confidence 44
No 40
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.64 E-value=0.003 Score=78.10 Aligned_cols=221 Identities=22% Similarity=0.246 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHhhhhh-------ccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhh
Q 001254 45 DKAALIAYIAKLETEIFEHQH-------HMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLK 117 (1113)
Q Consensus 45 D~~aLia~IskLE~ElydYQy-------NMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLk 117 (1113)
.+..|.+...+|++|+-++.. ..+-|--.+.-|.+..++++..+++- .+.+.+-...+..++.-=+.|+
T Consensus 202 ~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeE----tr~k~~L~~~l~~le~e~~~L~ 277 (859)
T PF01576_consen 202 QRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEE----TRAKQALEKQLRQLEHELEQLR 277 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH----hhhhhhhHHHHHHHHHHHHHHH
Confidence 344555666677777665544 44445445556666666666555442 1222222334555555566888
Q ss_pred hhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHH
Q 001254 118 KTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEV 197 (1113)
Q Consensus 118 KALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eV 197 (1113)
..|.-|-.+...|++.|.-+..+.+.+|--++.-... .+..+++=---...+|..+...+-+++.+.+.+++.-+-+
T Consensus 278 eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~---~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL 354 (859)
T PF01576_consen 278 EQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ---RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRL 354 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999988888666543322 2333332222234455555555556666655555554444
Q ss_pred hhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001254 198 VAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1113)
Q Consensus 198 EaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLE 272 (1113)
.+=-.+++-+.-...+.+...++...+--..|.+|..++......+-..++-....+-.++..-..+..+.-.++
T Consensus 355 ~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e 429 (859)
T PF01576_consen 355 QGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLE 429 (859)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Confidence 444444444444444444455554333336678888887777666666666566555555555555544444444
No 41
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.20 E-value=15 Score=47.71 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHHH
Q 001254 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV---VVSKSLKDERDSLRQERDAMRDQH 568 (1113)
Q Consensus 492 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre---~lek~~~~E~erLK~EK~~~r~~~ 568 (1113)
-.|......-.-..+.+..++..-++|+++|..++-++++..+|.+.....|- ++..-...|.+||+.+-...-
T Consensus 303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~--- 379 (1141)
T KOG0018|consen 303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA--- 379 (1141)
T ss_pred hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh---
Confidence 33444444455566778889999999999999999999999999999887554 455555667788877654433
Q ss_pred HhhhhhhhhhHHHHHHhhhh
Q 001254 569 KRDVDSLNREREEFMNKMVH 588 (1113)
Q Consensus 569 krelEsL~~ekEsF~~kMeh 588 (1113)
..+|+.|++...+=-+...|
T Consensus 380 ~~el~~ln~~~r~~~~~ld~ 399 (1141)
T KOG0018|consen 380 LEELEVLNRNMRSDQDTLDH 399 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 66666666655544444443
No 42
>PRK12704 phosphodiesterase; Provisional
Probab=95.12 E-value=0.29 Score=58.29 Aligned_cols=62 Identities=31% Similarity=0.323 Sum_probs=30.5
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhh
Q 001254 359 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 423 (1113)
Q Consensus 359 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEks 423 (1113)
..+..++.++...+.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.
T Consensus 57 e~~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~ 118 (520)
T PRK12704 57 EALLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKE 118 (520)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344456655555554 34555566666666555554444444444444444444333333
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.11 E-value=9.1 Score=44.83 Aligned_cols=90 Identities=20% Similarity=0.304 Sum_probs=52.5
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001254 455 SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRK 534 (1113)
Q Consensus 455 ~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~K 534 (1113)
.++.++.++..+......++....+..++..--.+|...|..+|.....+..+...|+.+..+.+..=..+.++-.++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 45555555555555555555555556666555566666666766666666666666666666666654444444444444
Q ss_pred HHHHHHHHHH
Q 001254 535 EAERVAVERV 544 (1113)
Q Consensus 535 Ea~~I~eEre 544 (1113)
++..+..++.
T Consensus 387 ~l~~~~~~~~ 396 (562)
T PHA02562 387 ELDKIVKTKS 396 (562)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 44
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.07 E-value=16 Score=47.32 Aligned_cols=274 Identities=19% Similarity=0.204 Sum_probs=0.0
Q ss_pred hHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHH
Q 001254 257 ILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQ 336 (1113)
Q Consensus 257 ~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQ 336 (1113)
+++....+.-.+++|+ ++..-|.+|-.-=..+..+++.|+-+=.+|.-++..+..-+.--++
T Consensus 679 l~~~~~~~~~~q~el~------------------~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~ 740 (1174)
T KOG0933|consen 679 LKQAQKELRAIQKELE------------------ALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLL 740 (1174)
T ss_pred HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHH
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHHHhhhHHHH--HHHHHHHHHh-hhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 001254 337 KIIANHESALRVKQSEFEAELAIKYKLAEDE--IEKKRRAWEL-RDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413 (1113)
Q Consensus 337 KLldeh~a~L~~Kk~EFElElE~krKs~eeE--le~K~~~~E~-rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K 413 (1113)
.=+..+.-.+..=.++......-.+++.+.= |+++..+|.. ||..++..+..+-.-.|.++..+..++..+.++..=
T Consensus 741 ~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l 820 (1174)
T KOG0933|consen 741 DDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERL 820 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 001254 414 SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEE 493 (1113)
Q Consensus 414 sk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeE 493 (1113)
.-...+-++.+...+..++.-..++..=+.++-.+.+.+-+.-.....-..+|...+.++...-.+-+.++..+-..-.|
T Consensus 821 ~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e 900 (1174)
T KOG0933|consen 821 QLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSE 900 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHH
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHH------------------------HHHHHHHHHHHHHHH
Q 001254 494 LDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR------------------------KEAERVAVERVVVSK 548 (1113)
Q Consensus 494 Id~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~------------------------KEa~~I~eEre~lek 548 (1113)
+-..-.-...|..|...++.++..-.++-+.|-.|-+=|. .+++.+.+-.+++++
T Consensus 901 ~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k 979 (1174)
T KOG0933|consen 901 KSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEK 979 (1174)
T ss_pred hhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHh
No 45
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.88 E-value=0.36 Score=57.40 Aligned_cols=70 Identities=29% Similarity=0.291 Sum_probs=36.9
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001254 359 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 431 (1113)
Q Consensus 359 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~l 431 (1113)
..+..+++++..++.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|..-++++
T Consensus 51 e~~~EaeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eL 120 (514)
T TIGR03319 51 EALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNL 120 (514)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556666665554 4455566666666666655555555555555554444444444444444433
No 46
>PRK00106 hypothetical protein; Provisional
Probab=94.87 E-value=1.2 Score=53.59 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=9.5
Q ss_pred ccchhhhhhccC
Q 001254 896 EDGIHAARKRRV 907 (1113)
Q Consensus 896 ~~~~~agrkrr~ 907 (1113)
--++||||-=||
T Consensus 476 ~yaiqaGREiRv 487 (535)
T PRK00106 476 SFALQAGREIRI 487 (535)
T ss_pred HHHHhcCCeEEE
Confidence 456899998886
No 47
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.60 E-value=15 Score=44.85 Aligned_cols=311 Identities=17% Similarity=0.184 Sum_probs=171.3
Q ss_pred HHHHHHHHH----hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHH
Q 001254 130 LEKAVHEIR----AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLS 205 (1113)
Q Consensus 130 LEKAL~emr----~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~Lr 205 (1113)
|+.-+..+| .+...||+.++.=++.|.-+|+.+......++..+.....-+.++-.+.-.+
T Consensus 68 L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~--------------- 132 (546)
T KOG0977|consen 68 LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA--------------- 132 (546)
T ss_pred HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------------
Confidence 344444444 4778999999999999999999998888887777766655555443332222
Q ss_pred HHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHH
Q 001254 206 RRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 285 (1113)
Q Consensus 206 RerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~L 285 (1113)
++...--|+++.+|...|-+.+.-++-.++.+..=++.....-+...++..+|..+++-++.+...-
T Consensus 133 -------------~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr 199 (546)
T KOG0977|consen 133 -------------EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR 199 (546)
T ss_pred -------------HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 1222234677888888888888888888887777777777777788888888888888887775443
Q ss_pred hhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhh-HHHHHHH-HHhHHHHhhhhhhHHHHHHHHhhh
Q 001254 286 NEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKES-NEIQKII-ANHESALRVKQSEFEAELAIKYKL 363 (1113)
Q Consensus 286 k~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~-~EIQKLl-deh~a~L~~Kk~EFElElE~krKs 363 (1113)
.+-...+..-+..|.-. ...=+.+|.+..-+ ..|+. ...+... ++-..++.-=+.+||.-+..-|+.
T Consensus 200 ~d~~n~~q~Lleel~f~----------~~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~d 268 (546)
T KOG0977|consen 200 VDLQNRVQTLLEELAFL----------KRIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKD 268 (546)
T ss_pred HHHHhHHHHHHHHHHHH----------HhccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33332222222222111 11222333332222 12221 1111110 011122223344566666677777
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001254 364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 443 (1113)
Q Consensus 364 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKE 443 (1113)
++.=.+.|+.++...=.--+ ..-+..-+.|...-.-+.+-..-|-+-|..-.+.++.|+.=+.+|..|+.
T Consensus 269 iE~~Y~~kI~~i~~~~~~~~----------~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r 338 (546)
T KOG0977|consen 269 IESWYKRKIQEIRTSAERAN----------VEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQR 338 (546)
T ss_pred HHHHHHHHHHHHHhhhcccc----------chhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhh
Confidence 77777777776653110000 00111112222222222222223333344555556666666777777766
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001254 444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA 499 (1113)
Q Consensus 444 el~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~ 499 (1113)
..+..=++.+...+.+-++..++.- |...|+-.+.-|--||..||.
T Consensus 339 ~~e~~L~~kd~~i~~mReec~~l~~----------Elq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 339 SFEQALNDKDAEIAKMREECQQLSV----------ELQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH----------HHHHhhchHhHHHhHHHHHHH
Confidence 6655555544444444444444444 444455555788889999985
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.44 E-value=27 Score=47.14 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=57.6
Q ss_pred HhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhh
Q 001254 171 AKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLL 250 (1113)
Q Consensus 171 ~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~L 250 (1113)
.|+..|..++..+..+...++..+.+++.+...|++++-....-....+ ++...-..+..+...+.+...++.+....+
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeL 371 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVV 371 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666667777777777777776665543322222 222223344444555555555555555555
Q ss_pred hhhhHhhHhhHHHHhHhHHHHHHHhhc
Q 001254 251 NEREDHILSKLQELSRKEKELEASRAN 277 (1113)
Q Consensus 251 NqREe~~~e~~~~l~~kEkeLEe~kkk 277 (1113)
.+-.+.+.+....+...+.++..++..
T Consensus 372 eeleeeleeleeEleelEeeLeeLqeq 398 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDELKSQ 398 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544443
No 49
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.09 E-value=15 Score=42.99 Aligned_cols=99 Identities=26% Similarity=0.269 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 001254 434 KKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL 513 (1113)
Q Consensus 434 ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~ 513 (1113)
+...|.++...+.....+++.......+...++.+-...+....+. -..+..++..++...+.|.....++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~-------i~~~~~~~~~l~~ei~~l~~~~~~~~~ 379 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQS-------LITLVDKAKKVKAAIEELQAEFVDNAE 379 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhchHH
Confidence 3444444444444444444444443333333333333333333222 233666777777777777777888888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001254 514 EKAKFEAEWEMIDEKREELRKEAERV 539 (1113)
Q Consensus 514 eKekFE~EWE~LDEKRael~KEa~~I 539 (1113)
+....+.+|..+...++++.++....
T Consensus 380 ~l~~l~~~l~~~~~~~~~~~ke~~~~ 405 (562)
T PHA02562 380 ELAKLQDELDKIVKTKSELVKEKYHR 405 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988763
No 50
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=93.99 E-value=1.1 Score=47.04 Aligned_cols=70 Identities=33% Similarity=0.395 Sum_probs=45.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001254 356 ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI 425 (1113)
Q Consensus 356 ElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLk 425 (1113)
++...|..++.|+..++.++..+|..|..+|+.|..+...|+++...|..++.+|..+...|+.++..+.
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777888888888888777777666666666666666666655555555555555555555544443
No 51
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.76 E-value=29 Score=44.98 Aligned_cols=116 Identities=22% Similarity=0.282 Sum_probs=60.7
Q ss_pred HHhHHhHHHHHHHHhhhhhHHHHHHHHH---hHHHHhhhhhhHH--HHHHHHhhhHH-----HHHHHHHHHHHhhhhhhh
Q 001254 314 QKKEQKLLVSQETLASKESNEIQKIIAN---HESALRVKQSEFE--AELAIKYKLAE-----DEIEKKRRAWELRDLDLG 383 (1113)
Q Consensus 314 e~KEkELl~leEKL~aRE~~EIQKLlde---h~a~L~~Kk~EFE--lElE~krKs~e-----eEle~K~~~~E~rEvel~ 383 (1113)
+.+|.-|..++|+-..+++ |+.||.. -=-.|+.-|-+++ -+++..|++++ .|+..=+..++.-|.+..
T Consensus 170 erreeSlkim~ET~qK~ek--I~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~ 247 (1200)
T KOG0964|consen 170 ERREESLKIMEETKQKREK--INELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRS 247 (1200)
T ss_pred HhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 4566677788888887765 5555544 2223333333333 25667777764 333333333444343332
Q ss_pred h---hHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001254 384 Q---REESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 431 (1113)
Q Consensus 384 h---~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~l 431 (1113)
. .=..+.-+-....-.++.++..=+.|+.++..|.+--..+.+.+-++
T Consensus 248 ~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~ 298 (1200)
T KOG0964|consen 248 SAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKI 298 (1200)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22222222233334455566666677777777777555555554333
No 52
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.16 E-value=25 Score=42.35 Aligned_cols=147 Identities=22% Similarity=0.267 Sum_probs=77.9
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001254 423 KLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL 502 (1113)
Q Consensus 423 sLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke 502 (1113)
.|.+..++|+.-+..|.+-++++..|...++.++.+++..+..+..-+++.......- .-|..++..+|..-.
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v-------~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEV-------SSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHHHHHH
Confidence 3667777777778888888888888888888888888777777777777665555433 334444444444443
Q ss_pred HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHH
Q 001254 503 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEF 582 (1113)
Q Consensus 503 ~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF 582 (1113)
....+..+.+. .|..|--.-.++..|++....+.. ....|-..++.+-..++..+.-=-..|......+
T Consensus 355 a~~~~e~~~k~-------~~~~l~~~Lqql~~Eae~Ak~ea~----~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 355 AAKAEEEKAKE-------AMSELPKALQQLSSEAEEAKKEAE----EAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA 423 (522)
T ss_pred HHHhhhcchhh-------hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222211 222222222333333332221111 1224555555555555555554444444444444
Q ss_pred HHhhh
Q 001254 583 MNKMV 587 (1113)
Q Consensus 583 ~~kMe 587 (1113)
.+-..
T Consensus 424 eaaKa 428 (522)
T PF05701_consen 424 EAAKA 428 (522)
T ss_pred HHHHH
Confidence 44333
No 53
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.31 E-value=18 Score=38.66 Aligned_cols=143 Identities=19% Similarity=0.286 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001254 480 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ 559 (1113)
Q Consensus 480 R~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~ 559 (1113)
|..-+.|-.-||++|...|......-+...++.++-.+.-.--..+.+.+++|++.+......+..|....
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k--------- 92 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK--------- 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 44566777889999999999999999999999999999999999999999999998887665554443322
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHH---HhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhh-HHHHHHHHHHHHhHHHHHHH
Q 001254 560 ERDAMRDQHKRDVDSLNREREEFM---NKMVHEHSEWFTKIQQERADFLLGIEMQKRDL-ENCIEKRREELESSFREREK 635 (1113)
Q Consensus 560 EK~~~r~~~krelEsL~~ekEsF~---~kMehErs~~~eKiq~Erad~l~d~EmqkreL-E~~iqkRqEEiE~~L~EREk 635 (1113)
..+. ....++..|..+.+.+. .+++.||.+|..+-.. +++|+. ||-.+ ..-++++...+...|..|+.
T Consensus 93 --~rl~-~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 93 --ARLK-ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred --HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 23556666666666554 3444555555544442 233332 22222 23455566666666666665
Q ss_pred HHHH
Q 001254 636 AFEE 639 (1113)
Q Consensus 636 ~FEe 639 (1113)
.+.+
T Consensus 165 qL~e 168 (201)
T PF13851_consen 165 QLNE 168 (201)
T ss_pred HHHH
Confidence 5543
No 54
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.29 E-value=42 Score=42.80 Aligned_cols=118 Identities=23% Similarity=0.294 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001254 439 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 518 (1113)
Q Consensus 439 ~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekF 518 (1113)
.+-++.+.+=.++|++-|-.+++|.++-.++.++.+--+.+|-+-.|++.+=|.+++ |.++.++-+. .
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlE--------lekqLerQRe----i 383 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE--------LEKQLERQRE----I 383 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH----H
Confidence 356788888899999999999999999999999999999998888888776665544 3333322111 0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 001254 519 EAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN 576 (1113)
Q Consensus 519 E~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~ 576 (1113)
| -.+-++-.|+.++-.--|+.+++...-|-+|.|. ..|.+|..|+-|-+-
T Consensus 384 E------~qrEEerkkeie~rEaar~ElEkqRqlewErar~--qem~~Qk~reqe~iv 433 (1118)
T KOG1029|consen 384 E------RQREEERKKEIERREAAREELEKQRQLEWERARR--QEMLNQKNREQEWIV 433 (1118)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHH
Confidence 1 1122223334444444556666666666665543 345555555544443
No 55
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.26 E-value=50 Score=43.66 Aligned_cols=338 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHH
Q 001254 236 LQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQK 315 (1113)
Q Consensus 236 Lqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~ 315 (1113)
+++...|+.-.--...+-+.+..=-++..+.+|...+++-.-+..++..+.-+.-.+.-.+.. .=..+......++.
T Consensus 269 I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~---~~~ki~~~~~~~~~ 345 (1293)
T KOG0996|consen 269 IEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYE---SRAKIAEMQEELEK 345 (1293)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q ss_pred hHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhh
Q 001254 316 KEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHD 395 (1113)
Q Consensus 316 KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqa 395 (1113)
-+.+|...-+|+..-...+.++.-+- .....+-..++.+++.+.-.++..=-+.-.+++-.++|.=.++.|-+..
T Consensus 346 ~~e~lk~~~ek~~~e~~~~~~k~e~~-----~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke 420 (1293)
T KOG0996|consen 346 IEEGLKDENEKFDIESNEEVEKNEAV-----KKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKE 420 (1293)
T ss_pred HHhHHHHHHHHhhhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHHh
Q 001254 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNI----IKSDLQKSLSSLDEKKKQVNCAKD 471 (1113)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~----lK~dlEK~~a~~e~q~~qi~ee~E 471 (1113)
+++-.++..+.++-.+.=....-+-...+...++.++.+...|...+.++.. +..++.++..++..-..++.+++.
T Consensus 421 ~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~ 500 (1293)
T KOG0996|consen 421 IEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARS 500 (1293)
T ss_pred HHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001254 472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK 551 (1113)
Q Consensus 472 ~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~ 551 (1113)
.+.+.++|=.-|+-.+..+..-.+.+-....-+++..++.+..--....+...+--+..++.+++.....+=..+...++
T Consensus 501 e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~ 580 (1293)
T KOG0996|consen 501 ELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLN 580 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHHHHHHHHHHHhh--hhhhhhhHHH
Q 001254 552 DERDSLRQERDAMRDQHKRD--VDSLNREREE 581 (1113)
Q Consensus 552 ~E~erLK~EK~~~r~~~kre--lEsL~~ekEs 581 (1113)
.=+.++-.-+..|...-.+. |.+|.+.+++
T Consensus 581 ~~rqrveE~ks~~~~~~s~~kVl~al~r~kes 612 (1293)
T KOG0996|consen 581 KLRQRVEEAKSSLSSSRSRNKVLDALMRLKES 612 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
No 56
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=91.61 E-value=5 Score=42.40 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=38.2
Q ss_pred HHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001254 374 AWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 432 (1113)
Q Consensus 374 ~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le 432 (1113)
++..+..++..+|..+.+||..|+.+.+.|..++..|+.+...|..+...|...+..++
T Consensus 72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777777777666666666666666555555555553
No 57
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.89 E-value=34 Score=39.10 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=35.6
Q ss_pred hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 001254 394 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN 446 (1113)
Q Consensus 394 qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~ 446 (1113)
..|..++..+.++--++-.+.+.+.++=+++++....|-.+-.+|-..+.+++
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein 82 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEIN 82 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777777777777777777777776666666666655554
No 58
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.37 E-value=31 Score=37.80 Aligned_cols=241 Identities=25% Similarity=0.330 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 001254 441 EKEEVNIIKSDL----QKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA 516 (1113)
Q Consensus 441 eKEel~~lK~dl----EK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKe 516 (1113)
+|++|..|++-+ ++.+ +++.+-..+......+.... ......+..-.-.+|..+|.+-..+..|...|..+..
T Consensus 2 EK~eL~~LNdRla~YIekVr-~LE~~N~~Le~~i~~~~~~~--~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~ 78 (312)
T PF00038_consen 2 EKEELQSLNDRLASYIEKVR-FLEQENKRLESEIEELREKK--GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEID 78 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhcc--cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhh
Confidence 456666555543 3443 34444444444444444442 3444556677778888888888888888888888888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH---HHHHHHHhhhhhhhhhHHHHHHhhhhhhhhH
Q 001254 517 KFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERD---AMRDQHKRDVDSLNREREEFMNKMVHEHSEW 593 (1113)
Q Consensus 517 kFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~---~~r~~~krelEsL~~ekEsF~~kMehErs~~ 593 (1113)
+...+.+.+-.|-.........+. ++-..|+...+ ..+......+.+|.-+-.-.....+.|-..+
T Consensus 79 ~l~~e~~~~r~k~e~e~~~~~~le-----------~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L 147 (312)
T PF00038_consen 79 NLKEELEDLRRKYEEELAERKDLE-----------EELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEEL 147 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 887777776555444433322222 23333333332 2344455556666655543333444455666
Q ss_pred HHHHHHHHHHhhhhhH-hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 001254 594 FTKIQQERADFLLGIE-MQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE 672 (1113)
Q Consensus 594 ~eKiq~Erad~l~d~E-mqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekE 672 (1113)
-..++ ..+.-++. ....+|...|..-+.+.+.....--...+.--...+..|+.........+..++.|...+-..
T Consensus 148 ~~~~~---~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~ 224 (312)
T PF00038_consen 148 REQIQ---SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQ 224 (312)
T ss_dssp STT-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccc---cccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhh
Confidence 66555 33333333 456677777777777777666555555555555666666666666666666666666655555
Q ss_pred HHHhhhhhhhhhHHHHHHHhhHHHHH
Q 001254 673 RMEINMDRQRRDREWAELNNSIEELM 698 (1113)
Q Consensus 673 R~Ei~~~ke~le~e~aEm~kdIeeL~ 698 (1113)
-+.+...-..+...-+.+.+.|.+|.
T Consensus 225 ~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 225 IQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhccccchhhhhhhHHHHH
Confidence 54444444444444444444444443
No 59
>PRK12705 hypothetical protein; Provisional
Probab=89.87 E-value=18 Score=43.79 Aligned_cols=60 Identities=25% Similarity=0.380 Sum_probs=33.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhh
Q 001254 357 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 423 (1113)
Q Consensus 357 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEks 423 (1113)
+...|..++.+++.++.++..+ |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.
T Consensus 61 ~~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 120 (508)
T PRK12705 61 LLRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE 120 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666555555 44566666666666666666666555555544444443
No 60
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.91 E-value=69 Score=39.68 Aligned_cols=216 Identities=18% Similarity=0.195 Sum_probs=119.1
Q ss_pred hHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001254 254 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 333 (1113)
Q Consensus 254 Ee~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~ 333 (1113)
+....+..+.+..+++.|+++...|+.-...++.-...+..-...+...+.....++..+..+++=...|...=..- .
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni--~ 397 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI--A 397 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH--H
Confidence 34445666667777777777666666665555555555555544444444444444444444443322221110000 2
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 001254 334 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413 (1113)
Q Consensus 334 EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K 413 (1113)
.+|.+++. -..|..++..+.+..|.-+.++++.=+... ..++-+.-.+...++........-
T Consensus 398 kL~~~v~~----s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~--------------~~~~~e~~~~~~~ik~~r~~~k~~ 459 (594)
T PF05667_consen 398 KLQALVEA----SEQRLVELAQQWEKHRAPLIEEYRRLKEKA--------------SNRESESKQKLQEIKELREEIKEI 459 (594)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------hhcchHHHHHHHHHHHHHHHHHHH
Confidence 22333322 233445555555556655555544332222 222222233344444444444444
Q ss_pred hhhhHHHHhhhHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 001254 414 SHLLEEKENKLIAFEKEADLK---------KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 484 (1113)
Q Consensus 414 sk~LKEkEksLkaeEK~le~e---------k~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~l 484 (1113)
...++.|+...+...+.++.- ...++.=.-.|.+-|.||.|++..+-.=.++|+.-..+|.-|-.-.+|++
T Consensus 460 ~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli 539 (594)
T PF05667_consen 460 EEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI 539 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444444444333321 23455556678888999999999999999999999999999998888887
Q ss_pred HHHHH
Q 001254 485 VLEIK 489 (1113)
Q Consensus 485 rLQse 489 (1113)
-=.++
T Consensus 540 frdAK 544 (594)
T PF05667_consen 540 FRDAK 544 (594)
T ss_pred HHHhh
Confidence 76666
No 61
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.34 E-value=72 Score=39.19 Aligned_cols=18 Identities=6% Similarity=0.040 Sum_probs=11.8
Q ss_pred CCCCcHHHHHHHHHccCC
Q 001254 20 SPLSDESIWKRLKEAGLD 37 (1113)
Q Consensus 20 ~~~~d~~iWkr~~eaG~D 37 (1113)
++.|-..+-..++-+=|+
T Consensus 37 Ng~GKttll~ai~~~LyG 54 (650)
T TIGR03185 37 NGAGKTTLLDAIQLALYG 54 (650)
T ss_pred CCCCHHHHHHHHHHHhcC
Confidence 667777777777655333
No 62
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=87.69 E-value=3.8 Score=50.42 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=14.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 001254 619 IEKRREELESSFREREKAFEEE 640 (1113)
Q Consensus 619 iqkRqEEiE~~L~EREk~FEee 640 (1113)
..+|..-+--.+..+-..|.+-
T Consensus 618 ~ekr~~RLkevf~~ks~eFr~a 639 (722)
T PF05557_consen 618 AEKRNQRLKEVFKAKSQEFREA 639 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666778888888765
No 63
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.82 E-value=1.3e+02 Score=40.37 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=21.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 001254 686 EWAELNNSIEELMVQRQKLEEQRQLLHAD 714 (1113)
Q Consensus 686 e~aEm~kdIeeL~~ls~KLk~QRE~~~~E 714 (1113)
--.|++| +-+|..++.+|...|....++
T Consensus 1016 kE~EkrK-v~~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1016 KEKEKRK-VMELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence 3457788 899999999998887655544
No 64
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=86.24 E-value=7.9 Score=47.79 Aligned_cols=69 Identities=30% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHH
Q 001254 256 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE 325 (1113)
Q Consensus 256 ~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leE 325 (1113)
|+..-.....+...++..++... .....|+++...|..++..+-.-+.++..++.....-|.++..|.-
T Consensus 258 ~i~~LE~en~~l~~Elk~Lr~~~-~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 258 HIRELEKENRRLREELKHLRQSQ-ENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWES 326 (722)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444332 3356788888888888888877777777777777777777777654
No 65
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.62 E-value=73 Score=36.47 Aligned_cols=167 Identities=23% Similarity=0.203 Sum_probs=112.8
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001254 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 475 (1113)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lki 475 (1113)
|-+...++..|.-=++=|++-++.-...|...-..+......|.++-+-+..+...+....+.+..+..++.+....+..
T Consensus 121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~ 200 (312)
T smart00787 121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 34455566666666777777766666665555555555555555555555555555555555555555444444333322
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001254 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 555 (1113)
Q Consensus 476 teeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~e 555 (1113)
- +..++..+..+|++ .=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus 201 ~--d~~eL~~lk~~l~~----~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~ 274 (312)
T smart00787 201 C--DPTELDRAKEKLKK----LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE 274 (312)
T ss_pred C--CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 24566555555444 34445556667888999999999999999999999999999888888888889899999
Q ss_pred hhHHHHHHHHHHH
Q 001254 556 SLRQERDAMRDQH 568 (1113)
Q Consensus 556 rLK~EK~~~r~~~ 568 (1113)
+|+..-..++...
T Consensus 275 ~Lk~~~~~Le~l~ 287 (312)
T smart00787 275 KLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888887654
No 66
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.91 E-value=74 Score=36.07 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhh
Q 001254 493 ELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI 525 (1113)
Q Consensus 493 EId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L 525 (1113)
+|+.++.+...+....+.+..++..+..+=..+
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444333333
No 67
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=83.32 E-value=1.8e+02 Score=39.10 Aligned_cols=204 Identities=20% Similarity=0.243 Sum_probs=104.5
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHh----HHHHHHHhhcHHHHHHHHhhhhhhhhHhHH
Q 001254 222 IIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRK----EKELEASRANVEEKFKALNEEKSNLDLTLV 297 (1113)
Q Consensus 222 ~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~k----EkeLEe~kkkie~~~~~Lk~ke~dl~~rl~ 297 (1113)
|..--.+|..-+-+|....--+.-+.. |-++-+++.+....++.. ..-|+++.......-.+++.-..+|...-.
T Consensus 1520 I~e~v~sL~nVd~IL~~T~~di~ra~~-L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~ 1598 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILSRTKGDIARAEN-LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQ 1598 (1758)
T ss_pred HHHHHHhcccHHHHHHhhhhhHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333345555555555554443433332 334445555544444332 334666666666666666666666665555
Q ss_pred HhhhhHHHHHHHH-------HHHHHhHHhHHHHHHHH--hhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHH
Q 001254 298 SLLKREEAVIERE-------ASLQKKEQKLLVSQETL--ASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 368 (1113)
Q Consensus 298 ~l~~rEee~~~~~-------~~Le~KEkELl~leEKL--~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEl 368 (1113)
.|+.-.+++...+ ..|...|.-+..|.-|. ++++-..|+++.+--...--.-++.|+ .|....+.++.=+
T Consensus 1599 ~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1599 LLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRLL 1677 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5555444444333 44444444444444443 356677888887765554444555666 6776666666666
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHhh----hhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001254 369 EKKRRAWELRDLDLGQREESLLER----EHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 431 (1113)
Q Consensus 369 e~K~~~~E~rEvel~h~Eekl~kR----EqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~l 431 (1113)
+.|..... .-..+=++|..+ -.+-+.++..|++.|-.+..+..+|.-+...|--.++++
T Consensus 1678 ~~r~~g~~----~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1678 EKRMEGSQ----AARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRV 1740 (1758)
T ss_pred HHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 55543221 111112222222 123345556666666666555555555555555555444
No 68
>PRK09039 hypothetical protein; Validated
Probab=82.18 E-value=1e+02 Score=35.51 Aligned_cols=114 Identities=16% Similarity=0.205 Sum_probs=73.6
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001254 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 195 (1113)
Q Consensus 116 LkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~ 195 (1113)
|=-.|+.+...-++|+-.|.+|+..+.. +...-+.+....++...-..+++..+....+.+++..-.++++.+...
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~----a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~ 140 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSA----AEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVE 140 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7778999999999999999999998882 333333333333322222335666666666666666666777777777
Q ss_pred HHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHH
Q 001254 196 EVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRK 233 (1113)
Q Consensus 196 eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~ewe 233 (1113)
-+-+.=.+||.++-++.++..+.+......+..+.+.+
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766666666666665544443333333
No 69
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.03 E-value=64 Score=33.02 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=66.9
Q ss_pred HHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhH
Q 001254 182 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKL 261 (1113)
Q Consensus 182 Ea~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~ 261 (1113)
.|.-+...++-++++++.|-..+-.++.||..=..-.|.++..-...|.+-...|.++..+..... ...
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-----------~l~ 79 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-----------QLN 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-----------HHH
Confidence 344455667778888888888888888888888888888888888888888888888887776554 334
Q ss_pred HHHhHhHHHHHHHhhcHHHHH
Q 001254 262 QELSRKEKELEASRANVEEKF 282 (1113)
Q Consensus 262 ~~l~~kEkeLEe~kkkie~~~ 282 (1113)
+-+..+|.+|+.+.+++..+.
T Consensus 80 rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 456667777777666655443
No 70
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=81.76 E-value=1.9e+02 Score=38.34 Aligned_cols=134 Identities=20% Similarity=0.279 Sum_probs=88.4
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHH
Q 001254 127 IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSR 206 (1113)
Q Consensus 127 VadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrR 206 (1113)
|.+.++.|.....++-. .+-|++.+..=+.....+.-++..|+-.-+|+.+++.......+..+...-+.-++++|
T Consensus 276 V~~~~~ql~~~~~~i~~----~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r 351 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKK----KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR 351 (1074)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 33344455444444433 23345556666666666666666677777777777888888888888888888888999
Q ss_pred HHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHH-HHHhhhhhhhhHhhHhhHHHH
Q 001254 207 RIASFKADCEEKEREIIRERQSLSDRKKILQQEHERL-LDAQTLLNEREDHILSKLQEL 264 (1113)
Q Consensus 207 erlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL-~e~q~~LNqREe~~~e~~~~l 264 (1113)
+-.-+..+..-.+..|..-+......+|.+-..+.++ -.++..+-++++.++-..+.+
T Consensus 352 e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~ev 410 (1074)
T KOG0250|consen 352 EVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEV 410 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 8888888877777777777777777777777776666 444444555555444433333
No 71
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=80.79 E-value=1.3e+02 Score=37.42 Aligned_cols=72 Identities=11% Similarity=0.041 Sum_probs=38.1
Q ss_pred hhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHh--------hhhHHHhhhhhHHHHHHhHhhhhhhhH
Q 001254 147 AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAE--------RKLQEVVAREDDLSRRIASFKADCEEK 218 (1113)
Q Consensus 147 tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~ae--------RKL~eVEaRE~~LrRerlSf~~E~ea~ 218 (1113)
..+.|...+..-..-+.+...++..+|.+|++.++.--+++.... .+|.++..+-...+-++....+-....
T Consensus 184 ~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l 263 (754)
T TIGR01005 184 QGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSV 263 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666677777777777776666555443322 344444444444444444444333333
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.90 E-value=2.5e+02 Score=38.57 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHHHHhh
Q 001254 333 NEIQKIIANHESALRVKQSEFEAELAIKYK 362 (1113)
Q Consensus 333 ~EIQKLldeh~a~L~~Kk~EFElElE~krK 362 (1113)
..-++.++.+-..|..+..++|--+++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~ 534 (1486)
T PRK04863 505 LREQRHLAEQLQQLRMRLSELEQRLRQQQR 534 (1486)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 455777888888888888888887766554
No 73
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=79.89 E-value=46 Score=32.09 Aligned_cols=89 Identities=26% Similarity=0.292 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001254 364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 443 (1113)
Q Consensus 364 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKE 443 (1113)
+...|..|+.+...++..+..++..|.++++.|....-.+..-=++-+. ...-..+..+.+......--.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~----------k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEA----------KRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888888888888888888888888777666544333333 333334444444444444445
Q ss_pred HHHHHHHHHHHhhhhhHHH
Q 001254 444 EVNIIKSDLQKSLSSLDEK 462 (1113)
Q Consensus 444 el~~lK~dlEK~~a~~e~q 462 (1113)
+|..+..+|..+.+.+..-
T Consensus 82 ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666655554433
No 74
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=79.42 E-value=2.4e+02 Score=38.11 Aligned_cols=118 Identities=24% Similarity=0.235 Sum_probs=75.3
Q ss_pred hhhhccchhheehhhhhhhHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHh
Q 001254 62 EHQHHMGLLILEKKELASKYEQIKASA--EAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRA 139 (1113)
Q Consensus 62 dYQyNMGLLLiEkKEwtSK~EeLkqa~--~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~ 139 (1113)
|=-|.+|.|- .-|+ |+. +.+ ..|..... .--|++.+.|=.-|.-.+..=..=++.|+..+..+..
T Consensus 711 dG~~r~G~l~---G~~~-k~~---a~~IG~~aR~~~R------~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~ 777 (1353)
T TIGR02680 711 DGRFRLGVLR---GAWA-KPA---AEYIGAAARERAR------LRRIAELDARLAAVDDELAELARELRALGARQRALAD 777 (1353)
T ss_pred CCceeeeeee---cccC-Ccc---hhHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357788775 7788 654 222 22222222 2335566666666777777767777788888888888
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhh
Q 001254 140 ESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKL 194 (1113)
Q Consensus 140 E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL 194 (1113)
+.+. |.++.-|..|+..+..+......+..++..|+..++.+-+....+.+.+
T Consensus 778 e~~~--~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l 830 (1353)
T TIGR02680 778 ELAG--APSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARREL 830 (1353)
T ss_pred HHHh--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777 7777888888888877766666666666666655555555444444443
No 75
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=79.14 E-value=1.9e+02 Score=36.70 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=29.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHH-HHhhhhHHHHhhhhH
Q 001254 357 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRAL-VDKEKDLVERSHLLE 418 (1113)
Q Consensus 357 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~l-kEKEkdl~~Ksk~LK 418 (1113)
+-++|+.+|.|++.-++++-.+|-.+..+|..+ ..++.. +|-++|.+.-+.+|-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~--------~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL--------QELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhHHHHHHHHH
Confidence 444555566666666666666666666666655 222333 445556665555553
No 76
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.08 E-value=79 Score=34.95 Aligned_cols=77 Identities=25% Similarity=0.296 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001254 628 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 707 (1113)
Q Consensus 628 ~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~Q 707 (1113)
..++.+-..|+.-+..-++.+.+++..- +=+++..-|+..|..|| ...-+++-.|+.||..|.+.=+.++..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er-------~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQER-------MAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888887776654 44555555555555555 455677888899999999888888877
Q ss_pred HHHHH
Q 001254 708 RQLLH 712 (1113)
Q Consensus 708 RE~~~ 712 (1113)
|....
T Consensus 76 r~~~~ 80 (230)
T PF10146_consen 76 RNKRQ 80 (230)
T ss_pred HHHHH
Confidence 76643
No 77
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.63 E-value=1.8e+02 Score=36.00 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHH
Q 001254 658 ELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKL 704 (1113)
Q Consensus 658 E~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KL 704 (1113)
.+.++.-++..++++..++..+...+.++...++++|+.+...-.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666666666666666655544443
No 78
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=77.54 E-value=1.1e+02 Score=37.25 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=42.2
Q ss_pred HhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001254 405 DKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (1113)
Q Consensus 405 EKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk 474 (1113)
+++++++.+-.-...||..-....+..+..+.++....+++...+..+++-...++.+...+.++++..+
T Consensus 189 ~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak 258 (489)
T PF05262_consen 189 DKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAK 258 (489)
T ss_pred ccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555555555556666666666666666666666666666666666666666665555555554433
No 79
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=76.44 E-value=2.9e+02 Score=37.35 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=27.0
Q ss_pred CCCCCccccccccCCCCCCCcccceeeeeeeeeeeceee
Q 001254 964 SNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTC 1002 (1113)
Q Consensus 964 ~~~~~~~~~~~s~nqtqg~~ee~~~~~~d~ii~isevtc 1002 (1113)
-.|+++-+...+..+-.++ .-.=+|-|++.|||-.||-
T Consensus 1127 V~~s~~~~l~~~~~~~k~~-~~~~il~i~k~~~v~~vt~ 1164 (1317)
T KOG0612|consen 1127 VIVSSKKILFYVSEQDKEQ-SGPLILDIKKLFHVRQVTQ 1164 (1317)
T ss_pred EeecccceEeeeccccccc-cchhhhhhhhceeEEeecc
Confidence 3566777777777777773 2234667889999999974
No 80
>PRK12705 hypothetical protein; Provisional
Probab=76.06 E-value=1.4e+02 Score=36.67 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 001254 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413 (1113)
Q Consensus 350 k~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K 413 (1113)
+.++|-|+...|..+... ..-+.+||-.+..+.+.+.+++..|+.+...|..+++++..+
T Consensus 65 ~~~~e~e~~~~~~~~~~~----e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 65 RNQQRQEARREREELQRE----EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444332 222444444444444444444444444444444444444433
No 81
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=76.04 E-value=88 Score=34.28 Aligned_cols=130 Identities=22% Similarity=0.322 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 001254 444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 523 (1113)
Q Consensus 444 el~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE 523 (1113)
+|-.|+..+--.++.+.....++..-...+..- . -|++.|-.+-.-...|++-|+..-..++.|.-
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K---~-----------~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~ 97 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTK---Q-----------LELEVCENELQRKKNEAELLREKLGQLEAELA 97 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---h-----------HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHH
Confidence 455555555555555555555555444433221 1 23444444444455555555555555555554
Q ss_pred hhHHHHHHH---HHHHH------HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHH
Q 001254 524 MIDEKREEL---RKEAE------RVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWF 594 (1113)
Q Consensus 524 ~LDEKRael---~KEa~------~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~ 594 (1113)
.|..--+.+ ....- ....++.. -......|+.+-+.+ +.+|-..+..++.|+...++||..|.
T Consensus 98 ~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~----~~~~~~~l~~e~erL----~aeL~~er~~~e~q~~~Fe~ER~~W~ 169 (202)
T PF06818_consen 98 ELREELACAGRLKRQCQLLSESDEAKAQRQA----GEDELGSLRREVERL----RAELQRERQRREEQRSSFEQERRTWQ 169 (202)
T ss_pred HHHHHHHhhccchhhhccccccchhHHhhcc----ccccchhHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 443333332 00000 00000100 011223334333333 34555667788999999999999997
Q ss_pred H
Q 001254 595 T 595 (1113)
Q Consensus 595 e 595 (1113)
+
T Consensus 170 e 170 (202)
T PF06818_consen 170 E 170 (202)
T ss_pred H
Confidence 4
No 82
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=75.29 E-value=1.7e+02 Score=34.07 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=12.1
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhhHHHHHH
Q 001254 570 RDVDSLNREREEFMNKMVHEHSEWFTKIQ 598 (1113)
Q Consensus 570 relEsL~~ekEsF~~kMehErs~~~eKiq 598 (1113)
+.+..|..+|-...+.|++|+.-++.+++
T Consensus 113 rkl~qLr~EK~~lE~~Le~EqE~~V~kL~ 141 (310)
T PF09755_consen 113 RKLNQLRQEKVELENQLEQEQEYLVNKLQ 141 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444444444444433333
No 83
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=74.57 E-value=1.5e+02 Score=33.24 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=33.6
Q ss_pred CCCCCCccc---ccCCCccccCCCCcHHHHHHHHHccCChHHHhhhcHHHHHHHHHHHHHHHhhhhh
Q 001254 2 ASPSSGRLA---ITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQH 65 (1113)
Q Consensus 2 ~~p~~~~l~---~~~g~rvl~~~~~d~~iWkr~~eaG~De~S~~rrD~~aLia~IskLE~ElydYQy 65 (1113)
.+|..|.++ |..|+.|-.+++= +.+|-..+ ..+...|.+.+..|..++..++-
T Consensus 47 ~~~~~G~v~~i~V~eG~~V~kG~~L----------~~ld~~~~-~~~l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 47 QHLEGGIVREILVREGDRVKAGQVL----------VELDATDV-EADAAELESQVLRLEAEVARLRA 102 (423)
T ss_pred ccCCCcEEEEEEeCCCCEecCCCeE----------EEEccchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 356678776 8899988654421 12344444 34667788888888877766543
No 84
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=73.71 E-value=1.1e+02 Score=33.81 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001254 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1113)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 521 (1113)
+.|..+..+..+....+......+..--+++++.++++..|-..+.++.+++..++.+..-..+|-..|.++...++.+
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888889999999999999999999999999888888888888777776666655555555444444333
No 85
>PRK09039 hypothetical protein; Validated
Probab=73.12 E-value=1.8e+02 Score=33.54 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=32.7
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 001254 465 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK 515 (1113)
Q Consensus 465 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eK 515 (1113)
++..-...|..++..-.+-..-=.-|+++|+.+|.|.-.|..+.+.++++-
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344666666666666666666777888888888666666666655544
No 86
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=72.26 E-value=2.1e+02 Score=33.74 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhc
Q 001254 153 AEARCMVENAQKKFAEAEAKLHAAESLQAEANR 185 (1113)
Q Consensus 153 aEA~aLv~~~eeKslEvE~KL~aAeak~AEa~R 185 (1113)
..+.....-++....+++.+|..|+..+..--+
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555554433
No 87
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=72.23 E-value=2e+02 Score=33.51 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=105.7
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 001254 504 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVE----RVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 579 (1113)
Q Consensus 504 LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eE----re~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ek 579 (1113)
|..+-.-||.+-..+-..|-.|-+.-..|+..+-.|.-. =|-++..+..=-+.|+++|..+--.|.++=|.|.-.=
T Consensus 32 L~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L 111 (310)
T PF09755_consen 32 LQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDL 111 (310)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444443322 2233333444467899999999888888877776554
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHhhhhhhHHHHHH
Q 001254 580 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRER---EKAFEEEKMREFQQISSLKEKAE 656 (1113)
Q Consensus 580 EsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~ER---Ek~FEeek~~EL~~IN~lkE~a~ 656 (1113)
-.=.+.+.+|+..+-..+.+|...++.-+--+=..|+.++...+.++++-.+++ |.+.|.+-+ +|-..+-
T Consensus 112 ~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE-------~lvN~L~ 184 (310)
T PF09755_consen 112 SRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQE-------ALVNRLW 184 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHH
Confidence 445778889999999999999999988888888888888888888888655554 233333332 3444567
Q ss_pred HHHHHHHHHHHHhHHH
Q 001254 657 KELEQVTLEIKRLDLE 672 (1113)
Q Consensus 657 kE~Eev~lE~~rLekE 672 (1113)
+-|.++..|...|+..
T Consensus 185 Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788888888777765
No 88
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=72.10 E-value=1.2 Score=54.53 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred hhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHH-------h----chHHHHHHHHHHHHHHHHHhhhhhhhhHhhHh
Q 001254 191 ERKLQEVVAREDDLSRRIASFKADCEEKEREIIRER-------Q----SLSDRKKILQQEHERLLDAQTLLNEREDHILS 259 (1113)
Q Consensus 191 eRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qR-------e----~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e 259 (1113)
..+.++++..-..|+.++-++..+.......+..-- . .+.++..++...++.+......+..=..++..
T Consensus 192 ~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~ 271 (713)
T PF05622_consen 192 AQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEE 271 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666777777777776655544333211 1 12333444444444333222112222222233
Q ss_pred hHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHH
Q 001254 260 KLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 339 (1113)
Q Consensus 260 ~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLl 339 (1113)
....+..+..+.+++...-+ +..+|+++-|-+..+...+...|.++...+..|+ ++-.+. ..+ +.|
T Consensus 272 le~ei~~L~q~~~eL~~~A~-~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLe----d~~~lk--------~qv-k~L 337 (713)
T PF05622_consen 272 LEKEIDELRQENEELQAEAR-EARALRDELDELREKADRADKLENEVEKYKKKLE----DLEDLK--------RQV-KEL 337 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--------HHH-HHH
Confidence 33334444444444433332 4566777777776666666666666555554333 222222 122 456
Q ss_pred HHhHHHHhhhhhhHHHHHHH
Q 001254 340 ANHESALRVKQSEFEAELAI 359 (1113)
Q Consensus 340 deh~a~L~~Kk~EFElElE~ 359 (1113)
.++++.|--.+..+|-++..
T Consensus 338 ee~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 338 EEDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777743
No 89
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=72.01 E-value=43 Score=33.65 Aligned_cols=76 Identities=25% Similarity=0.300 Sum_probs=55.1
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001254 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (1113)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk 474 (1113)
|.....+|+++-.++..++..+..++..+...-+ .....+...++++..++.-++-.++....+.++...+.++|+
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~---~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLK---SLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555566666655554444 447788889999999999999999999999999888888776
No 90
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=71.98 E-value=2.6e+02 Score=34.79 Aligned_cols=275 Identities=21% Similarity=0.280 Sum_probs=124.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001254 353 FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 432 (1113)
Q Consensus 353 FElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le 432 (1113)
||+|+-.-|+.+++- -.+....|-.+.+-...++.-..++.++++.+.+==..+..+...|...+-++.
T Consensus 90 ye~El~~ar~~l~e~-----------~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~ 158 (546)
T KOG0977|consen 90 YEAELATARKLLDET-----------ARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEIN 158 (546)
T ss_pred hhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHH
Confidence 555555555555543 223333333344444444444444444444444444444444444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001254 433 LKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 512 (1113)
Q Consensus 433 ~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk 512 (1113)
.-+...-.=-+++.-||.+...+...|..=+.+++.|. --|.++.---..|.++|+-+..+=.. ++.
T Consensus 159 ~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et-------llr~d~~n~~q~Lleel~f~~~~h~~------eI~ 225 (546)
T KOG0977|consen 159 TLKRRIKALEDELKRLKAENSRLREELARARKQLDDET-------LLRVDLQNRVQTLLEELAFLKRIHKQ------EIE 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhccHH------HHH
Confidence 33333333344555556666666666655555555443 11233333334466666655433221 223
Q ss_pred HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh-----------hhH
Q 001254 513 LEKAKFEAEW--EMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN-----------RER 579 (1113)
Q Consensus 513 ~eKekFE~EW--E~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~-----------~ek 579 (1113)
+++.+|..+- +.=|+=+.+|..=+.+|-.+=++. .+.=+.+++.-|++.+..++ ..|
T Consensus 226 e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~----------~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~r 295 (546)
T KOG0977|consen 226 EERRKARRDTTADNREYFKNELALAIREIRAQYEAI----------SRQNRKDIESWYKRKIQEIRTSAERANVEQNYAR 295 (546)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHhhhccccchhHHHH
Confidence 3344444443 222333333443333333322222 22223334444444444443 233
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 001254 580 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKEL 659 (1113)
Q Consensus 580 EsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~ 659 (1113)
|+... |. ..|-.=|++ |.|+|-.-. .+.++.+.++..|.+=-+.|+..=..- ..+|
T Consensus 296 EEl~~-~R-------~~i~~Lr~k-lselE~~n~----~L~~~I~dL~~ql~e~~r~~e~~L~~k-----------d~~i 351 (546)
T KOG0977|consen 296 EELRR-IR-------SRISGLRAK-LSELESRNS----ALEKRIEDLEYQLDEDQRSFEQALNDK-----------DAEI 351 (546)
T ss_pred HHHHH-HH-------hcccchhhh-hccccccCh----hHHHHHHHHHhhhhhhhhhhhhhhhhH-----------HHHH
Confidence 33221 11 111111111 124444333 455677788888888888888643221 2345
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhH
Q 001254 660 EQVTLEIKRLDLERMEINMDRQRRDR 685 (1113)
Q Consensus 660 Eev~lE~~rLekER~Ei~~~ke~le~ 685 (1113)
..|.-|+..|-.|.+.+--.+.-|+-
T Consensus 352 ~~mReec~~l~~Elq~LlD~ki~Ld~ 377 (546)
T KOG0977|consen 352 AKMREECQQLSVELQKLLDTKISLDA 377 (546)
T ss_pred HHHHHHHHHHHHHHHHhhchHhHHHh
Confidence 55666666666666665555555554
No 91
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=71.65 E-value=1.3e+02 Score=31.21 Aligned_cols=88 Identities=22% Similarity=0.319 Sum_probs=64.5
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001254 468 CAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 547 (1113)
Q Consensus 468 ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~le 547 (1113)
+-.+.|+.++.+.+=+-.-=--|-.+++.....++.+..+++.-+.+-..++.+-+.+...+..|.-|+..+..+|+.|.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555444333222345567788888888999999999999999999999999999999999999997777776
Q ss_pred Hhhhhhhh
Q 001254 548 KSLKDERD 555 (1113)
Q Consensus 548 k~~~~E~e 555 (1113)
+.+.....
T Consensus 87 k~lq~~q~ 94 (140)
T PF10473_consen 87 KELQKKQE 94 (140)
T ss_pred HHHHHHHH
Confidence 66554433
No 92
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=69.68 E-value=70 Score=36.45 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=9.2
Q ss_pred HHHHHHHhhHHHHHHH
Q 001254 685 REWAELNNSIEELMVQ 700 (1113)
Q Consensus 685 ~e~aEm~kdIeeL~~l 700 (1113)
-.|.||+-=...+.-|
T Consensus 166 V~W~EINAA~Gq~~LL 181 (314)
T PF04111_consen 166 VEWNEINAAWGQTALL 181 (314)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH
Confidence 3788888766655443
No 93
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=69.24 E-value=3.9e+02 Score=35.69 Aligned_cols=131 Identities=21% Similarity=0.156 Sum_probs=79.7
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 001254 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLL-------QKEKEEVNIIKSDLQKSLSSLDEKKKQVNC 468 (1113)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L-------~~eKEel~~lK~dlEK~~a~~e~q~~qi~e 468 (1113)
|.++.+-|.+.=.++....-.|...+|.|.-+.+++..+.... ..+.+.+..+-.......+..++-.-+|..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444433332222 224445555555555555666666666666
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhH
Q 001254 469 AKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMID 526 (1113)
Q Consensus 469 e~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LD 526 (1113)
....|.-..-|.+-+.-+-.+||+.+-+|=-|-..+..=++.|.+.+-..|.|-..|=
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~Ll 550 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLL 550 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666666666666666788999999988888888888888888888888877664
No 94
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=66.44 E-value=3.8e+02 Score=34.47 Aligned_cols=324 Identities=17% Similarity=0.243 Sum_probs=149.3
Q ss_pred hhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHh-----
Q 001254 193 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRK----- 267 (1113)
Q Consensus 193 KL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~k----- 267 (1113)
||++.-..-..|..+ +..|+-.+|++++.=---+.+-+-++++..--|.+.|..+|+=++..+.-...|+..
T Consensus 216 KlKE~~~k~~~leee---y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe 292 (786)
T PF05483_consen 216 KLKEDYEKFEDLEEE---YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQE 292 (786)
T ss_pred HHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHH
Confidence 444433333333332 345666666665554444445555555555555555555555555555555555444
Q ss_pred --HHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhh----hHHHHHHHHHHHHHhHHhHHHHHHHHhhhh---hHHHHHH
Q 001254 268 --EKELEASRANVEEKFKALNEEKSNLDLTLVSLLK----REEAVIEREASLQKKEQKLLVSQETLASKE---SNEIQKI 338 (1113)
Q Consensus 268 --EkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~----rEee~~~~~~~Le~KEkELl~leEKL~aRE---~~EIQKL 338 (1113)
..+|+.++..+..+-.+-+.-+.++......+.. +|-.+.............+..|+-+++.=. +.++|.+
T Consensus 293 ~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~ 372 (786)
T PF05483_consen 293 HLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRL 372 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544444444333333333333333322221 111222222233333334445555544322 2444443
Q ss_pred HHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhh------hhHHHhHHHHHHhhhhHHH
Q 001254 339 IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLERE------HDLEVQSRALVDKEKDLVE 412 (1113)
Q Consensus 339 ldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kRE------qaLe~k~~~lkEKEkdl~~ 412 (1113)
-. ++....-+=+||..+-..+++..+.+.. +|+++...-.-|++.. ..+++-.+.|+..+.+|..
T Consensus 373 ~~-----~ed~lk~l~~eLqkks~eleEmtk~k~~----ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~ 443 (786)
T PF05483_consen 373 KK-----NEDQLKILTMELQKKSSELEEMTKQKNN----KEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTG 443 (786)
T ss_pred HH-----hHHHHHHHHHHHHHhhHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222233345555555555555544332 2333322222222222 3345555555556665554
Q ss_pred HhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh-------hhhhhhhHHH
Q 001254 413 RSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA-------MKSEAGELSV 485 (1113)
Q Consensus 413 Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lki-------teeER~E~lr 485 (1113)
. |.-+++.+.-.+-.| -...+.=+.+-..++.++..++++..+-.+-..+... +.-+++...-
T Consensus 444 l---lq~~ekev~dLe~~l-------~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~ 513 (786)
T PF05483_consen 444 L---LQIREKEVHDLEIQL-------TTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMAL 513 (786)
T ss_pred H---HHhhhhHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4 333344444444333 3333333333333344444444333222222111111 1112222222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001254 486 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER 538 (1113)
Q Consensus 486 LQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~ 538 (1113)
==.++.+-|...+.|.+-++++++.|......+-.|.+.+-+.-+.-.-|.++
T Consensus 514 elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~ 566 (786)
T PF05483_consen 514 ELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKC 566 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22356778888999999999999999888888877777766655544444444
No 95
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=66.38 E-value=84 Score=35.83 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 001254 479 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 512 (1113)
Q Consensus 479 ER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk 512 (1113)
+.+.+..-...+.++.+.+-.|........|.|+
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666777777777777777777765
No 96
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=64.91 E-value=1.7e+02 Score=35.59 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001254 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 571 (1113)
Q Consensus 492 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~kre 571 (1113)
.+++..|+.-+++..|++.|+++-..-+++=..+.-|-.+++--+++...|...+. .+...|....+.-+.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence 58899999999999999999998888888888888888888877777776665544 45556666666666666666
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHH
Q 001254 572 VDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRR 623 (1113)
Q Consensus 572 lEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRq 623 (1113)
-+.++.+.-+.-. ++.|++-|=|+|=.-|...+
T Consensus 423 ~e~~~~~~~s~d~-------------------~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 423 EEREKEALGSKDE-------------------KITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHhHheehhhhh
Confidence 5555544433322 33467777666655554443
No 97
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=62.75 E-value=1.8e+02 Score=32.20 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=52.2
Q ss_pred HhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHH
Q 001254 162 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241 (1113)
Q Consensus 162 ~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~ee 241 (1113)
|+.+..+.+.+|...+.....+.........+...++..-..++.++..+...+...+..+..-+..-..-.+--.....
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~ 82 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ 82 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666555555555555555555555444444444444444433333333222222211111222222333
Q ss_pred HHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHH
Q 001254 242 RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKF 282 (1113)
Q Consensus 242 RL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~ 282 (1113)
.+.+.+..+.+-.+-...++.....++.+|..++.....+.
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak 123 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAK 123 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555556666665555444443
No 98
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=62.16 E-value=74 Score=35.67 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=67.2
Q ss_pred hhhHHHHH-----HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001254 480 AGELSVLE-----IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDER 554 (1113)
Q Consensus 480 R~E~lrLQ-----seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~ 554 (1113)
|.=+-+|| |.||+-.+.||-.-+++.+|-+.|..+-+..+.|++.+.+.-..|+.|.-.+.+.+.++. .|-
T Consensus 118 RAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~----~ev 193 (290)
T COG4026 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP----GEV 193 (290)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hHH
Confidence 34455566 899999999999999999999999999999999999999999999999988887665543 466
Q ss_pred hhhHHHHHHHHH
Q 001254 555 DSLRQERDAMRD 566 (1113)
Q Consensus 555 erLK~EK~~~r~ 566 (1113)
.+|+..-+.+.+
T Consensus 194 ~~L~~r~~ELe~ 205 (290)
T COG4026 194 YDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHhcc
Confidence 667766555543
No 99
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=61.98 E-value=1.5e+02 Score=34.89 Aligned_cols=17 Identities=18% Similarity=-0.048 Sum_probs=11.2
Q ss_pred cHHHHHHHHHHHHHHHh
Q 001254 45 DKAALIAYIAKLETEIF 61 (1113)
Q Consensus 45 D~~aLia~IskLE~Ely 61 (1113)
...+|-+.+++|++++.
T Consensus 105 ~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 105 QLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566777777777664
No 100
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=61.41 E-value=5e+02 Score=34.14 Aligned_cols=370 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHH---HHHHHHHHHHHhhhh
Q 001254 304 EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAE---DEIEKKRRAWELRDL 380 (1113)
Q Consensus 304 ee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~e---eEle~K~~~~E~rEv 380 (1113)
+.+...+--|.-.+..|.+||-++.-+|.. -.-|++-.+.+..-+.+-|.|||+-+--++ ++|-.|+.++--.=-
T Consensus 92 rdv~llEddlk~~~sQiriLQn~c~~lE~e--kq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~ 169 (1265)
T KOG0976|consen 92 RDVNLLEDDLKHHESQIRILQNKCLRLEME--KQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGE 169 (1265)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH
Q ss_pred hhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001254 381 DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 460 (1113)
Q Consensus 381 el~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e 460 (1113)
+|+..=..|..-+-.+..++....+..+.+..|++.++|- ...+.++-.+-...+-..-.+-
T Consensus 170 ~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~------------------~~~nD~~sle~~~~q~~tq~vl 231 (1265)
T KOG0976|consen 170 DLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKED------------------LIEKDQKSLELHKDQENTQKVL 231 (1265)
T ss_pred HHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhcchHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001254 461 EKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 540 (1113)
Q Consensus 461 ~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~ 540 (1113)
....|+.--.+-|....-.- +.|++..+-+-+--.+|..-.-+|+.-......|--.-.+--.+++.++....
T Consensus 232 ~ev~QLss~~q~ltp~rk~~-------s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lk 304 (1265)
T KOG0976|consen 232 KEVMQLSSQKQTLTPLRKTC-------SMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLK 304 (1265)
T ss_pred HHHHHHHHhHhhhhhHhhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHH-------HHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhh
Q 001254 541 VER-------VVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKR 613 (1113)
Q Consensus 541 eEr-------e~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~Emqkr 613 (1113)
.-| +--.+|++.|--.|+.++.++|-..... ++.=|+|-++.. |+|-++-
T Consensus 305 qt~t~a~gdseqatkylh~enmkltrqkadirc~LlEa----rrk~egfddk~~-------------------eLEKkrd 361 (1265)
T KOG0976|consen 305 QTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEA----RRKAEGFDDKLN-------------------ELEKKRD 361 (1265)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcchhHHHH-------------------HHHHHHH
Q ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhh
Q 001254 614 DLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNS 693 (1113)
Q Consensus 614 eLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kd 693 (1113)
.++++...-++-.+..=.+.-...+..-+++ +.|.-||..+-+ +++.+----....|-++....-..+..+....-.-
T Consensus 362 ~al~dvr~i~e~k~nve~elqsL~~l~aerq-eQidelKn~if~-~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q 439 (1265)
T KOG0976|consen 362 MALMDVRSIQEKKENVEEELQSLLELQAERQ-EQIDELKNHIFR-LEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQ 439 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhh-hhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001254 694 IEELMVQRQKLEEQRQLLHADREEIQAESERL 725 (1113)
Q Consensus 694 IeeL~~ls~KLk~QRE~~~~ERe~fl~~vEkl 725 (1113)
.+-..+|-.--+--|+--+.--+..++||.-+
T Consensus 440 ~s~fk~Lke~aegsrrraIeQcnemv~rir~l 471 (1265)
T KOG0976|consen 440 LSNFKVLKEHAEGSRRRAIEQCNEMVDRIRAL 471 (1265)
T ss_pred HhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHH
No 101
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=61.40 E-value=2.5e+02 Score=32.69 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=98.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 001254 448 IKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 527 (1113)
Q Consensus 448 lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDE 527 (1113)
|-..|+.-...|.+---+++.+..+|..-..++.|+.+ ....+=|+.+++|..+|+..++ .+|+++.+.|.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr--~rVrq~V~hVqaqEreLLe~v~------~rYqR~y~ema~ 75 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIR--ARVRQVVAHVQAQERELLEAVE------ARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 34455556666777778899999999999999999998 4567889999999999987665 578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 001254 528 KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 579 (1113)
Q Consensus 528 KRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ek 579 (1113)
+--.|..=+.+|..==.-++|+++.-.| +|-.+|...+..-|+.|+.++
T Consensus 76 ~L~~LeavLqRir~G~~LVekM~~YASD---QEVLdMh~FlreAL~rLrqee 124 (324)
T PF12126_consen 76 QLGRLEAVLQRIRTGGALVEKMKLYASD---QEVLDMHGFLREALERLRQEE 124 (324)
T ss_pred HHhHHHHHHHHHHhHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999998777777777766554 678888888888888877643
No 102
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=60.87 E-value=3.7e+02 Score=32.54 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001254 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1113)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 521 (1113)
..|...+..|+--++.+..........+.+|..+..|+.. +..+|-.+|..-+...++|-+.+..|+.+.++-|.+
T Consensus 171 ~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk---~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 171 KQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK---TLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333333333333444444444445555566666655543 446777777777888888888888888888776654
No 103
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=60.66 E-value=2e+02 Score=31.98 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=56.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHH---HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 001254 473 LEAMKSEAGELSVLEIKLKEELDVVRAQKL---ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK- 548 (1113)
Q Consensus 473 LkiteeER~E~lrLQseLKeEId~~R~Qke---~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek- 548 (1113)
++-...=+.+|-.+-..|.++++.++.... ++.+|.+.|-+||..+..|--.|..=.-.|+...+....+|.+...
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556677777777777777766543 3456677777777777776666666666666655555555444322
Q ss_pred --hhhhhhhhhHHHHHHHHHH
Q 001254 549 --SLKDERDSLRQERDAMRDQ 567 (1113)
Q Consensus 549 --~~~~E~erLK~EK~~~r~~ 567 (1113)
.++.|...||.+-+.||..
T Consensus 83 i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 2234555566655555554
No 104
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=59.63 E-value=3e+02 Score=31.00 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=36.8
Q ss_pred HHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhH
Q 001254 339 IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDL 410 (1113)
Q Consensus 339 ldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl 410 (1113)
||-...-|..+..++.-.|.. +..++..-..+++-.+.++...+..+..-+..+..-.++++.-+..+
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k----~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKK----AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333332 33455566666667777777777777766666655555554444444
No 105
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=58.92 E-value=3.4e+02 Score=31.47 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Q 001254 615 LENCIEKRREELESSFREREKAFEE 639 (1113)
Q Consensus 615 LE~~iqkRqEEiE~~L~EREk~FEe 639 (1113)
-|..+-.+..+++..|..+.++.+.
T Consensus 132 ~E~~lvq~I~~L~k~le~~~k~~e~ 156 (294)
T COG1340 132 EERELVQKIKELRKELEDAKKALEE 156 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666677777777665543
No 106
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.28 E-value=21 Score=38.64 Aligned_cols=56 Identities=30% Similarity=0.513 Sum_probs=34.9
Q ss_pred HHHHHHHHHhccCCCCccccc---CCCCCCC---CCCCccc---------------------------cccccCCccccc
Q 001254 808 WIKRFADLVFKHSGENSVEND---EEKSPTS---DHEDASL---------------------------TINSRKRQPVRY 854 (1113)
Q Consensus 808 WlrKCTskIFk~SP~Kk~~~~---~e~~~~s---~~~~~~~---------------------------~~~~~k~q~iry 854 (1113)
||++.+.+|=+++-=++...| ++-.|+- .|+|.+. ++-..+.||.||
T Consensus 69 wLq~~v~kinnlglF~s~~NHVLVNeY~pgqGImPHtDGPaf~piVstiSlGsh~vldf~~p~r~e~~d~te~~dqp~R~ 148 (224)
T KOG3200|consen 69 WLQYYVDKINNLGLFKSPANHVLVNEYLPGQGIMPHTDGPAFHPIVSTISLGSHTVLDFYDPVRQEVNDGTESKDQPLRY 148 (224)
T ss_pred HHHHHHHHhhcccccCCCcceeEeecccCCCCcCcCCCCCcccceEEEEecCCceEEecccccccccCCccccCCCCccc
Confidence 999999999777655555666 2322222 2333322 225678999999
Q ss_pred ccC---CCeeee
Q 001254 855 SFG---EPKVIL 863 (1113)
Q Consensus 855 a~g---epkvil 863 (1113)
.|. +|++.|
T Consensus 149 ~fsllleprslL 160 (224)
T KOG3200|consen 149 LFSLLLEPRSLL 160 (224)
T ss_pred eeeeeeccceEE
Confidence 998 555433
No 107
>PLN03188 kinesin-12 family protein; Provisional
Probab=58.22 E-value=4.3e+02 Score=36.04 Aligned_cols=151 Identities=25% Similarity=0.299 Sum_probs=88.2
Q ss_pred HhhHhhhhhhhhHHHHHHhHHHHHHH-HH------hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHH
Q 001254 111 KREESLKKTLGVEKECIASLEKAVHE-IR------AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 183 (1113)
Q Consensus 111 KREEnLkKALgvEKqCVadLEKAL~e-mr------~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa 183 (1113)
-+-|.|+--|..||.|...|.-||+- |. +-||+.-=..-.=|+--+.++++|. |-|..||.|
T Consensus 1079 ~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~------dvkkaaaka----- 1147 (1320)
T PLN03188 1079 ALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGID------DVKKAAARA----- 1147 (1320)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHh-----
Confidence 45578999999999999999999963 32 2333322222222333333333332 223333322
Q ss_pred hcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHH-----H---------HHHHHHhhh
Q 001254 184 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE-----H---------ERLLDAQTL 249 (1113)
Q Consensus 184 ~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~-----e---------eRL~e~q~~ 249 (1113)
.+|.. + -|=+.+|.+|.-+...+-.++|+.|++=-|.||.- + =||-++..-
T Consensus 1148 g~kg~------------~---~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea 1212 (1320)
T PLN03188 1148 GVRGA------------E---SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEA 1212 (1320)
T ss_pred ccccc------------h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1 13344555555555556666677776666666532 1 244444445
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhh
Q 001254 250 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 287 (1113)
Q Consensus 250 LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ 287 (1113)
+.-=+++++.-.++-...-|.++.+++|-+.+..+|+.
T Consensus 1213 ~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1213 LTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556777777777777778888888888888777776
No 108
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=58.13 E-value=1.5e+02 Score=37.33 Aligned_cols=71 Identities=23% Similarity=0.284 Sum_probs=50.1
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001254 466 VNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 540 (1113)
Q Consensus 466 i~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~ 540 (1113)
+..-...++-.+.|-++|.+.=.+||.+|++++.+-..+-.+++ .+.+-.+|-+.+|..-..|++++..=.
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455556666677777777888888888888888877776 455566777888888888887776544
No 109
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=53.31 E-value=2.9e+02 Score=28.96 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=45.7
Q ss_pred HHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhh---------hHHHHHHHHHhchHHHHHHHH
Q 001254 170 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCE---------EKEREIIRERQSLSDRKKILQ 237 (1113)
Q Consensus 170 E~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~e---------a~E~~~~~qRe~L~eweKkLq 237 (1113)
..|+..|...+.++.++...+.+++..+.. .++.+.-.|..++- =.+..|..+++.+..|+.-+.
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~---~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~ 235 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISE---NIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLP 235 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 445566666666777777777777777754 36777777776643 245678899999999998764
No 110
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=51.79 E-value=3.4e+02 Score=29.24 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=52.2
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001254 250 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 329 (1113)
Q Consensus 250 LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~a 329 (1113)
+.+...++......+....+.++..+..++.-+..|......+...........+.+......+...+..+..++..+..
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555555555555555555333333444455566666777777777777777777
Q ss_pred hhhHHHHHHHH
Q 001254 330 KESNEIQKIIA 340 (1113)
Q Consensus 330 RE~~EIQKLld 340 (1113)
+-+.-++.|..
T Consensus 145 ~r~~l~~~l~~ 155 (302)
T PF10186_consen 145 RRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHH
Confidence 77666665543
No 111
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.51 E-value=3.6e+02 Score=29.13 Aligned_cols=124 Identities=23% Similarity=0.346 Sum_probs=89.5
Q ss_pred HHHHHHHHcc---CChHHHhhhcHH-HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHH----HHHHHhh
Q 001254 26 SIWKRLKEAG---LDEVSIKRRDKA-ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEA----AELLQKH 97 (1113)
Q Consensus 26 ~iWkr~~eaG---~De~S~~rrD~~-aLia~IskLE~ElydYQyNMGLLLiEkKEwtSK~EeLkqa~~e----ae~~lKR 97 (1113)
.+|+||..+. ++..--+--|+. .|--+|-.++..|-...-.+.-++-.++-..-+|+++...++. |+.+|+.
T Consensus 2 ~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~ 81 (219)
T TIGR02977 2 GIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK 81 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4899998765 566666778999 8888999999999999999999999999999988888776553 3444432
Q ss_pred hhh-hhhhHHH---HHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhh
Q 001254 98 DRA-SHLSAIA---EARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAAD 149 (1113)
Q Consensus 98 Eqa-Ahl~ALs---EaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tse 149 (1113)
-.- ----||. .++..=..|...+.--+.-|..|..-|+.|+..+.++|..-.
T Consensus 82 G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 82 GREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111222 223344556666777778888899999999998888876544
No 112
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=49.15 E-value=4.4e+02 Score=29.76 Aligned_cols=90 Identities=23% Similarity=0.295 Sum_probs=55.3
Q ss_pred HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001254 505 MVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMN 584 (1113)
Q Consensus 505 lkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~ 584 (1113)
.-|.+-++......+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++. +...+..+++....
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e----~~~~~~~~~~~L~~ 170 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE----EGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 33444444444455555555556666666666666666666666666666666666555543 45667788888888
Q ss_pred hhhhhhhhHHHHHH
Q 001254 585 KMVHEHSEWFTKIQ 598 (1113)
Q Consensus 585 kMehErs~~~eKiq 598 (1113)
+|.-+=...++++-
T Consensus 171 ~l~~ell~~yeri~ 184 (239)
T COG1579 171 KLDPELLSEYERIR 184 (239)
T ss_pred hcCHHHHHHHHHHH
Confidence 88876666666554
No 113
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=48.07 E-value=6e+02 Score=31.06 Aligned_cols=66 Identities=23% Similarity=0.224 Sum_probs=43.6
Q ss_pred hhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHH
Q 001254 259 SKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETL 327 (1113)
Q Consensus 259 e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL 327 (1113)
.+...+..+-.+|..++.-++..+.+-.+-+ ..++..+..++.....++..|...+++|..|...+
T Consensus 169 ~~~~kve~L~~Ei~~lke~l~~~~~a~~eAe---ee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~ 234 (522)
T PF05701_consen 169 ENEEKVEELSKEIIALKESLESAKLAHIEAE---EERIEIAAEREQDAEEWEKELEEAEEELEELKEEL 234 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666667767766666655433322 34555556677777888888888888888887777
No 114
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=46.84 E-value=4.3e+02 Score=33.97 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=56.0
Q ss_pred hhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHH
Q 001254 256 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEI 335 (1113)
Q Consensus 256 ~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EI 335 (1113)
++++..+.+-.=..-++.|+..+......+..--.+|...-..+-.+..++......++....+|....++|..+....+
T Consensus 489 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 568 (782)
T PRK00409 489 NAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL 568 (782)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444454444455555555544444333333333333333334444445555555556666666666666666666667
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHH
Q 001254 336 QKIIANHESALRVKQSEFEAELAIK 360 (1113)
Q Consensus 336 QKLldeh~a~L~~Kk~EFElElE~k 360 (1113)
+++..+.+.+|..-+.+.+.=+...
T Consensus 569 ~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 569 EEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666666666665544444333
No 115
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.60 E-value=8.3e+02 Score=32.26 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=47.7
Q ss_pred hHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHH
Q 001254 260 KLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 339 (1113)
Q Consensus 260 ~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLl 339 (1113)
-...++..-++|++.=+..-++++.|++.-++|+.++-..+..-.+...-.........+|..+ +.++++|.
T Consensus 679 ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~--------~~e~k~l~ 750 (970)
T KOG0946|consen 679 MEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAA--------LSENKKLE 750 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHH--------HHHHHHHH
Confidence 3444555556666666666677888888888888888877766666555555555555555444 34555555
Q ss_pred HHh
Q 001254 340 ANH 342 (1113)
Q Consensus 340 deh 342 (1113)
.+|
T Consensus 751 ~~q 753 (970)
T KOG0946|consen 751 NDQ 753 (970)
T ss_pred HHH
Confidence 443
No 116
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=46.32 E-value=4.8e+02 Score=29.45 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 001254 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV-ERVVVSKSLKDERDSLRQERDAMRDQHKR 570 (1113)
Q Consensus 492 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~e-Ere~lek~~~~E~erLK~EK~~~r~~~kr 570 (1113)
+||+++-.|-.++.+....+......||++=+.|--+-++-++.-.+.+. .+-.|-..++.+-++++.+ +....+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~ 120 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQN 120 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Confidence 58999999999999999999999999999998888888887777776654 3556777777777777555 55666666
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001254 571 DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 608 (1113)
Q Consensus 571 elEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~ 608 (1113)
+.-.++ .+-..|-+|.-.--++-++--..|..+|
T Consensus 121 ei~k~r----~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 121 EIKKVR----EENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 655554 5556666666555566666655555554
No 117
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=45.97 E-value=4.8e+02 Score=29.38 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=20.5
Q ss_pred hhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Q 001254 201 EDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247 (1113)
Q Consensus 201 E~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q 247 (1113)
...+..+...+.++...++..+..-+..+..++..+...+..+...+
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~ 178 (423)
T TIGR01843 132 QSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVIS 178 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443333
No 118
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=45.35 E-value=6.7e+02 Score=30.84 Aligned_cols=411 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhh
Q 001254 211 FKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKS 290 (1113)
Q Consensus 211 f~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~ 290 (1113)
|.+|--+.-=.|.+-+..+.+-+-.|...+..+.....-|++=-+.-..+...+........+.++.+-.-+-.+=.
T Consensus 89 ~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~--- 165 (569)
T PRK04778 89 FEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGP--- 165 (569)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc---
Q ss_pred hhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHH
Q 001254 291 NLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEK 370 (1113)
Q Consensus 291 dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~ 370 (1113)
+++.++..|..-|.+...|.+=-++=.=++-..++..
T Consensus 166 --------------a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~----------------------------- 202 (569)
T PRK04778 166 --------------ALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQ----------------------------- 202 (569)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-----------------------------
Q ss_pred HHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH---------HHHHHhHHHHHHHHHH
Q 001254 371 KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI---------AFEKEADLKKSLLQKE 441 (1113)
Q Consensus 371 K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLk---------aeEK~le~ek~~L~~e 441 (1113)
.+..+..-++.++.==.=+.+..+.|=+-+..|+.==+.|. ..+++|..=+.+|...
T Consensus 203 --------------l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~ 268 (569)
T PRK04778 203 --------------LEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDEN 268 (569)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHH-------
Q 001254 442 KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLE------- 514 (1113)
Q Consensus 442 KEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~e------- 514 (1113)
...|..+ +|....+.+..=..+|+.--+.|+--..-+...-.....+..-|++++.+-..|..|.+.|++.
T Consensus 269 ~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e 346 (569)
T PRK04778 269 LALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESE 346 (569)
T ss_pred HHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchh
Q ss_pred ---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhh
Q 001254 515 ---KAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHS 591 (1113)
Q Consensus 515 ---KekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehErs 591 (1113)
...|+.+-+.|...-..+..........-..+..-+. .+...++.+.-++.+|...+.
T Consensus 347 ~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~le---------------el~e~leeie~eq~ei~e~l~---- 407 (569)
T PRK04778 347 LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELE---------------EILKQLEEIEKEQEKLSEMLQ---- 407 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH----
Q ss_pred hHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHH
Q 001254 592 EWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDL 671 (1113)
Q Consensus 592 ~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLek 671 (1113)
.=+.-|..+.++...+...|. +-.+.-+..++..+=+-.-.-...+.-++.+|..
T Consensus 408 -------------------~Lrk~E~eAr~kL~~~~~~L~------~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~ 462 (569)
T PRK04778 408 -------------------GLRKDELEAREKLERYRNKLH------EIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAE 462 (569)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhhh
Q 001254 672 ERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLH---ADREEIQAESERLKK 727 (1113)
Q Consensus 672 ER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~---~ERe~fl~~vEklK~ 727 (1113)
+......|-...+.+..+...+++.|..+..-|-+...++- ..+++|..+......
T Consensus 463 ~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~ 521 (569)
T PRK04778 463 ELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAE 521 (569)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHH
No 119
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=45.28 E-value=5.4e+02 Score=29.77 Aligned_cols=126 Identities=12% Similarity=0.093 Sum_probs=66.3
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHH---------hhhhHHHhhhhhHHHHHHhHhhhhhh
Q 001254 146 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSA---------ERKLQEVVAREDDLSRRIASFKADCE 216 (1113)
Q Consensus 146 ~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~a---------eRKL~eVEaRE~~LrRerlSf~~E~e 216 (1113)
...+.+...+.....-+++..-++..+|.+|+..+..--+++.-. ..+|.++..+-...+.++....+-..
T Consensus 160 ~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 239 (444)
T TIGR03017 160 TNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEG 239 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777788888888888888888888887766665432 22344444433333333322211111
Q ss_pred hHHH-----HHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001254 217 EKER-----EIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1113)
Q Consensus 217 a~E~-----~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLE 272 (1113)
.... .+ -.=..+......|.+.+..|.+....+...-..+......+...+..|.
T Consensus 240 ~~~~~~~~~~~-~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 240 GSSGKDALPEV-IANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLN 299 (444)
T ss_pred ccCCcccchhh-hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 0000 00 0001233444555555666666555555555555555555555554443
No 120
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=44.30 E-value=71 Score=34.94 Aligned_cols=50 Identities=32% Similarity=0.425 Sum_probs=30.7
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001254 676 INMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERL 725 (1113)
Q Consensus 676 i~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEkl 725 (1113)
+..+.+.|..+|.++++....|..-.++|.+-|.+|-+||+.|...+.+.
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~ 85 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQ 85 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666555443
No 121
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=43.41 E-value=2.2e+02 Score=26.42 Aligned_cols=67 Identities=28% Similarity=0.395 Sum_probs=49.8
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 001254 452 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 528 (1113)
Q Consensus 452 lEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK 528 (1113)
+++..++=.++..++-++=++|-.++ .++-.-|.++|.+-..+.+.+..|+...+..+.+-+.|-.+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~e----------l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKE----------LKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666665554 88888999999999999999999998888888877766543
No 122
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=43.24 E-value=4.1e+02 Score=27.75 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHH
Q 001254 232 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREA 311 (1113)
Q Consensus 232 weKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~ 311 (1113)
|+++.....+-|-..++--.-=+.||..-.+.|...+..++.+-.-.+.+...+..-+..|......+..=+-+++.+.+
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888777666667788888888888888888888877777777777777777777777777888888888
Q ss_pred HHHHhHHhHHHHHHHHhhhh
Q 001254 312 SLQKKEQKLLVSQETLASKE 331 (1113)
Q Consensus 312 ~Le~KEkELl~leEKL~aRE 331 (1113)
.-+.-.++|-..++++..=|
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776544
No 123
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=42.79 E-value=3.6e+02 Score=26.99 Aligned_cols=96 Identities=27% Similarity=0.301 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001254 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 522 (1113)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 522 (1113)
..+..+...+...+..+..+-.....++++.+.-=---.+-..-=..||++...++.+...|-.+++..+.....-+.-|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444555566666666666666666666644211111111222256777777788888888888888877777777777
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 001254 523 EMIDEKREELRKEAERVAV 541 (1113)
Q Consensus 523 E~LDEKRael~KEa~~I~e 541 (1113)
+ +-+..|.++...+..
T Consensus 97 ~---~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 97 E---EQKEQLEKELSELEQ 112 (132)
T ss_pred H---HHHHHHHHHHHHHHH
Confidence 5 345555555554443
No 124
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=42.54 E-value=7.9e+02 Score=30.86 Aligned_cols=50 Identities=24% Similarity=0.189 Sum_probs=23.2
Q ss_pred HhHHHHHHHHHhhhhhhhhh----hhhhhhHHHHHHHHHhhhhHHHHHhhhhhh
Q 001254 128 ASLEKAVHEIRAESAETKVA----ADSKFAEARCMVENAQKKFAEAEAKLHAAE 177 (1113)
Q Consensus 128 adLEKAL~emr~E~AeiK~t----sesKLaEA~aLv~~~eeKslEvE~KL~aAe 177 (1113)
...|.+|...+.++.-+-.. ++.+|++.+.-...++-....+++.+....
T Consensus 211 ~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 211 RDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777766554321 123344444433344444444444443333
No 125
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.42 E-value=3.9e+02 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=14.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhh
Q 001254 449 KSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGE 482 (1113)
Q Consensus 449 K~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E 482 (1113)
+..++++...++.-...|...+..+..++..|.+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~ 101 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE 101 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3333333444444444444444444444444443
No 126
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=42.15 E-value=3.8e+02 Score=28.68 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001254 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 567 (1113)
Q Consensus 488 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~ 567 (1113)
.+|+.+|+.++.....|....+.++..|.-. .|-..+-++..+|+++...+..+=.++..+=..--+.++.+.....+.
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~ 150 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEA 150 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777766655 233333334444444444444333333333333344444444444444
Q ss_pred HHhhhhhhhhhHHHH
Q 001254 568 HKRDVDSLNREREEF 582 (1113)
Q Consensus 568 ~krelEsL~~ekEsF 582 (1113)
+.+=-+.+-.-+.-+
T Consensus 151 anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 151 ANRWTDNIFSLKSYL 165 (188)
T ss_pred HHHHHhhHHHHHHHH
Confidence 444444443333333
No 127
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=42.05 E-value=2.7e+02 Score=37.01 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=6.6
Q ss_pred hheehhhhhhhHHHH
Q 001254 70 LILEKKELASKYEQI 84 (1113)
Q Consensus 70 LLiEkKEwtSK~EeL 84 (1113)
+++|-=...+=++-|
T Consensus 91 IVMEY~~gGSL~~lL 105 (1021)
T PTZ00266 91 ILMEFCDAGDLSRNI 105 (1021)
T ss_pred EEEeCCCCCcHHHHH
Confidence 556543333333333
No 128
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=41.90 E-value=2.6e+02 Score=29.50 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhh
Q 001254 216 EEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 292 (1113)
Q Consensus 216 ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl 292 (1113)
.+.+..+...|++|.+-.|.--+...+|.....-|...+..+.+....+..++.++..++.+|..-...|+++...+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888888888888888888888888888888888888888877777776655555555544433
No 129
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=41.86 E-value=6.4e+02 Score=29.61 Aligned_cols=206 Identities=26% Similarity=0.325 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH--------------HHHHHHHHHHHHHHHHH
Q 001254 436 SLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS--------------VLEIKLKEELDVVRAQK 501 (1113)
Q Consensus 436 ~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~l--------------rLQseLKeEId~~R~Qk 501 (1113)
..|++-.+-|..|-.+|++.+.+-..=+..+.+=+++...++.-..++. .=+..|=+-+-.+|.+-
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Confidence 4566666777777777777766666666666655544444443333322 12234444455555555
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH---HHHHhhhhhhhhh
Q 001254 502 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMR---DQHKRDVDSLNRE 578 (1113)
Q Consensus 502 e~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r---~~~krelEsL~~e 578 (1113)
.-|..|.+.|++...--..+--+|-++-+..+-....+. ..-+. .|++.|=..-..++ .++++++-++--+
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~-----~~~~~-~ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG-----ARHFP-HEREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc-----ccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666555555445555555544444332222221 00000 22222222222222 2344555555555
Q ss_pred HHHHHHhhhhhhhhHHHHH---HHHHHHhhhhhHhhhhhhHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 001254 579 REEFMNKMVHEHSEWFTKI---QQERADFLLGIEMQKRDLENC-IEKRREELESSFREREKAFEEEKMREFQQISSLKEK 654 (1113)
Q Consensus 579 kEsF~~kMehErs~~~eKi---q~Erad~l~d~EmqkreLE~~-iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~ 654 (1113)
+++++ -||+..-.|+ ..|-+.+|.+=+..--+++.- |+| +||++|=+..++|+.---.+||-.|.+
T Consensus 156 keEl~----~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~EN------RyL~erl~q~qeE~~l~k~~i~KYK~~ 225 (319)
T PF09789_consen 156 KEELV----TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMEN------RYLKERLKQLQEEKELLKQTINKYKSA 225 (319)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433 3455544443 345566665544433333332 233 599999999999999999999988877
Q ss_pred HHH
Q 001254 655 AEK 657 (1113)
Q Consensus 655 a~k 657 (1113)
+.+
T Consensus 226 le~ 228 (319)
T PF09789_consen 226 LER 228 (319)
T ss_pred HHh
Confidence 653
No 130
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.66 E-value=5e+02 Score=28.36 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=26.8
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 001254 502 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL 557 (1113)
Q Consensus 502 e~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erL 557 (1113)
..|.+|.+.|+......++-=..+....+.|+.....|..-+..+.-++..-.+.|
T Consensus 59 ~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 59 RQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444455555555555555555555555544444433
No 131
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=41.65 E-value=9.8e+02 Score=31.72 Aligned_cols=148 Identities=13% Similarity=0.174 Sum_probs=66.4
Q ss_pred HHHHHhhHhhhhhhhhHHHHHH---------hHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhh
Q 001254 107 AEARKREESLKKTLGVEKECIA---------SLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAE 177 (1113)
Q Consensus 107 sEaeKREEnLkKALgvEKqCVa---------dLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAe 177 (1113)
+....|.+-|.+.+|++.-.-. .....+..++.....+-..++..++....-+..+......+...+-.+.
T Consensus 164 a~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~~~~~l~~~~~~~~~~~~~~~ 243 (1047)
T PRK10246 164 AKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQLLTAQQQQQ 243 (1047)
T ss_pred CChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999985421 1233444555555554444444444443333333333333222222222
Q ss_pred HHHH------HHhcchhHHhhhhHHHhhhhhHHHHHHhHhh-----hhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 001254 178 SLQA------EANRYHRSAERKLQEVVAREDDLSRRIASFK-----ADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 246 (1113)
Q Consensus 178 ak~A------Ea~Rk~s~aeRKL~eVEaRE~~LrRerlSf~-----~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~ 246 (1113)
..+. +.......+...+..+..........+..+. ......-..+...+..+...+..+...+..+...
T Consensus 244 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~e~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (1047)
T PRK10246 244 QSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWERIQEQSAALAHTRQQIEEVNTRLQST 323 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 0001111222222222222222222222221 1222344445555666666666666666666666
Q ss_pred hhhhhhhh
Q 001254 247 QTLLNERE 254 (1113)
Q Consensus 247 q~~LNqRE 254 (1113)
+..+....
T Consensus 324 ~~~~~~~~ 331 (1047)
T PRK10246 324 MALRARIR 331 (1047)
T ss_pred HHHHHHHH
Confidence 55555444
No 132
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=40.85 E-value=4.2e+02 Score=27.18 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=29.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 001254 472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVET 508 (1113)
Q Consensus 472 ~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEa 508 (1113)
.++.++.|-.+|++|=..|-.-|.+||..-..|=-++
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 4466888999999999999999999998877664444
No 133
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.34 E-value=2.9e+02 Score=28.40 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001254 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (1113)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk 474 (1113)
+++..|..+|..++..+..-...+......|.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333333333
No 134
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=40.07 E-value=5.3e+02 Score=28.15 Aligned_cols=111 Identities=22% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHhhhhhhHHHHHHHH
Q 001254 581 EFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE--EEKMREFQQISSLKEKAEKE 658 (1113)
Q Consensus 581 sF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FE--eek~~EL~~IN~lkE~a~kE 658 (1113)
+|+.+=.+++..-..++...-.+-...++-.+.+|......+..+++..|-++++.+- ...-..|..|..+|+...+|
T Consensus 7 ~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~e 86 (206)
T PF14988_consen 7 EYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQERE 86 (206)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHH--------hhhhhhhhhHHHHHHH
Q 001254 659 LEQVTLEIKRLDLERME--------INMDRQRRDREWAELN 691 (1113)
Q Consensus 659 ~Eev~lE~~rLekER~E--------i~~~ke~le~e~aEm~ 691 (1113)
|..+.-++.++..+-.+ .-..|.+|+.+..+++
T Consensus 87 I~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~ 127 (206)
T PF14988_consen 87 IQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELK 127 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 135
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=40.05 E-value=8.3e+02 Score=30.37 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=65.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001254 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 555 (1113)
Q Consensus 476 teeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~e 555 (1113)
+.+-|.|--.||++||.=--.|++=.+.-+.|. ++|-+|=-.|=.+|-=--.=..|..++...|-.+++-.-+=-+
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei----QqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEI----QQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777889999988888888778888876 5788888888877765555556777888888888888888888
Q ss_pred hhHHHHHHH
Q 001254 556 SLRQERDAM 564 (1113)
Q Consensus 556 rLK~EK~~~ 564 (1113)
+||.||..-
T Consensus 482 lLkrEKe~~ 490 (527)
T PF15066_consen 482 LLKREKETR 490 (527)
T ss_pred HHHHHHHHH
Confidence 888888754
No 136
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=39.38 E-value=7.3e+02 Score=30.65 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=44.5
Q ss_pred HHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 001254 389 LLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 466 (1113)
Q Consensus 389 l~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi 466 (1113)
+..+.+.++.++-.+..|-+.+...++.++|-.+.|.... ..-+.+|.+..+.........+.....|++|++.|
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq---~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ---DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455677777777788888888888888887777776433 22244444444444444444444445555555443
No 137
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=38.62 E-value=6.1e+02 Score=28.46 Aligned_cols=9 Identities=56% Similarity=0.508 Sum_probs=3.5
Q ss_pred HHHhHHHHH
Q 001254 126 CIASLEKAV 134 (1113)
Q Consensus 126 CVadLEKAL 134 (1113)
|.+-+++|+
T Consensus 41 ~~~A~~~A~ 49 (297)
T PF02841_consen 41 NRAAVEKAV 49 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 138
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=38.57 E-value=7.8e+02 Score=29.64 Aligned_cols=27 Identities=11% Similarity=-0.045 Sum_probs=12.4
Q ss_pred ccCCCCcccccCC-CCCCCCCCCccccc
Q 001254 818 KHSGENSVENDEE-KSPTSDHEDASLTI 844 (1113)
Q Consensus 818 k~SP~Kk~~~~~e-~~~~s~~~~~~~~~ 844 (1113)
.+||+-++..+.- .+++|.--..+++|
T Consensus 420 slspS~~ASSSlt~~pcSSPV~~k~llG 447 (561)
T KOG1103|consen 420 SLSPSLPASSSLTPRPCSSPVKKKPLLG 447 (561)
T ss_pred ccCCCCcccccCCCCCCCCccccccccc
Confidence 3566555544433 33444444444444
No 139
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=37.15 E-value=5.4e+02 Score=27.35 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=45.1
Q ss_pred HHHHHHHcc---CChHHHhhhcHHHHHH-HHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHH
Q 001254 27 IWKRLKEAG---LDEVSIKRRDKAALIA-YIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAE 89 (1113)
Q Consensus 27 iWkr~~eaG---~De~S~~rrD~~aLia-~IskLE~ElydYQyNMGLLLiEkKEwtSK~EeLkqa~~ 89 (1113)
+|+||..+. ++..--+--|+..++. +|-.++..|=...-.++-.+-.++.+.-+|+++...+.
T Consensus 2 lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~ 68 (221)
T PF04012_consen 2 LFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAE 68 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888765 4666666678887664 57777777777777777777777777777777666554
No 140
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=36.47 E-value=1.3e+03 Score=31.66 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHhHH
Q 001254 613 RDLENCIEKRREELESSFREREKA-FEEEKMREF-QQISSLKEKAEKELEQVTLEIKRLDL 671 (1113)
Q Consensus 613 reLE~~iqkRqEEiE~~L~EREk~-FEeek~~EL-~~IN~lkE~a~kE~Eev~lE~~rLek 671 (1113)
-.|=..|....++.+..|.||++. ||+=-..++ .+|...--.|+.=+..|.-.|.++..
T Consensus 1085 ~~l~~~l~~~i~~~~~ll~e~er~l~E~~L~~~v~~~l~~ri~~A~~~v~~mN~~l~~~~~ 1145 (1353)
T TIGR02680 1085 AGLLARLEQEIAQRRELLTARERELLENHLQGEIARHLQSLILAAERQVAAMNTELAKRPT 1145 (1353)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677888888888999999875 666555444 34555666666667777777776665
No 141
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.41 E-value=1.3e+03 Score=31.47 Aligned_cols=221 Identities=22% Similarity=0.284 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH----
Q 001254 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ---- 567 (1113)
Q Consensus 492 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~---- 567 (1113)
.++|.++.+++-|+.+..+|.. +.+ |-....-|..-|+..+.+..-+-+.+.+. .+.+.+|...+.+.
T Consensus 652 k~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~----l~~~~~El~~~~~~i~~~ 723 (1141)
T KOG0018|consen 652 KEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRS----LEQNELELQRTESEIDEF 723 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh
Confidence 4455555555555555555555 333 44444445555555555544444444422 23344555555544
Q ss_pred ------HHhhhhhhhhhHHHHHHhhhhhhhhHHH----------------HHHHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 001254 568 ------HKRDVDSLNREREEFMNKMVHEHSEWFT----------------KIQQERADFLLGIEMQKRDLENCIEKRREE 625 (1113)
Q Consensus 568 ------~krelEsL~~ekEsF~~kMehErs~~~e----------------Kiq~Erad~l~d~EmqkreLE~~iqkRqEE 625 (1113)
++|.++.......+...+|..=-+.+|. ..+++.++=++.|+-|+--|++.|+=-+.
T Consensus 724 ~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~- 802 (1141)
T KOG0018|consen 724 GPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ- 802 (1141)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec-
Confidence 3455555555555555555421122211 12788888888999999999888764433
Q ss_pred HHhHHH---HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHH
Q 001254 626 LESSFR---EREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQ 702 (1113)
Q Consensus 626 iE~~L~---EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~ 702 (1113)
++.+ +|...+=+.-+.+++.+---.+.+.+++-.+ .+|.. ++ ..-=+..+.+|.+.++...-|+..-.
T Consensus 803 --~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~--k~----k~~~~~~~~e~~e~~k~~~~~~~~~t 873 (1141)
T KOG0018|consen 803 --KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK--KN----KSKFEKKEDEINEVKKILRRLVKELT 873 (1141)
T ss_pred --ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3444455555566666666666666666666 44433 22 22234456677777777777777777
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhhhhH
Q 001254 703 KLEEQRQLLHADREEIQAESERLKKLEDLK 732 (1113)
Q Consensus 703 KLk~QRE~~~~ERe~fl~~vEklK~ckncg 732 (1113)
||..++-.+-..++++.. |.+.-+..|+
T Consensus 874 kl~~~i~~~es~ie~~~~--er~~lL~~ck 901 (1141)
T KOG0018|consen 874 KLDKEITSIESKIERKES--ERHNLLSKCK 901 (1141)
T ss_pred HHhhhhhhhhhHHHHHHH--HHHHHHHHhh
Confidence 776666555555555543 2333344454
No 142
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=36.38 E-value=6.3e+02 Score=32.52 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=18.9
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHh
Q 001254 140 ESAETKVAADSKFAEARCMVENAQKKFAEAEAK 172 (1113)
Q Consensus 140 E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~K 172 (1113)
+..+++-+|...|...+.-+..++.+..+.-.+
T Consensus 136 ~~g~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~ 168 (771)
T TIGR01069 136 DDGKVKDGASEELDAIRESLKALEEEVVKRLHK 168 (771)
T ss_pred CCCEECCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665555444333
No 143
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=36.30 E-value=5.8e+02 Score=27.49 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 001254 490 LKEELDVVRAQKLE 503 (1113)
Q Consensus 490 LKeEId~~R~Qke~ 503 (1113)
|...+...|.+.-.
T Consensus 138 l~~~l~~~r~~l~~ 151 (302)
T PF10186_consen 138 LQSQLARRRRQLIQ 151 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 144
>PRK10698 phage shock protein PspA; Provisional
Probab=36.26 E-value=6.1e+02 Score=27.77 Aligned_cols=63 Identities=22% Similarity=0.319 Sum_probs=42.8
Q ss_pred HHHHHHHHcc---CChHHHhhhcHH-HHHHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHH
Q 001254 26 SIWKRLKEAG---LDEVSIKRRDKA-ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASA 88 (1113)
Q Consensus 26 ~iWkr~~eaG---~De~S~~rrD~~-aLia~IskLE~ElydYQyNMGLLLiEkKEwtSK~EeLkqa~ 88 (1113)
.||+||..+. ++..--+--|+. .|--+|-.++..|.+-...+.-++-.+|...-+|+++...+
T Consensus 2 ~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~ 68 (222)
T PRK10698 2 GIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQ 68 (222)
T ss_pred CHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999876 566666777999 77778888888887765555555555555555555544433
No 145
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=36.04 E-value=8.8e+02 Score=29.53 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=10.8
Q ss_pred HhHHHHHHhhhhhhhhhH
Q 001254 668 RLDLERMEINMDRQRRDR 685 (1113)
Q Consensus 668 rLekER~Ei~~~ke~le~ 685 (1113)
.|-.||.-+...-+++..
T Consensus 410 ~l~~ek~al~lqlErl~~ 427 (511)
T PF09787_consen 410 SLGSEKNALRLQLERLET 427 (511)
T ss_pred HHHhhhhhccccHHHHHH
Confidence 555666666666555554
No 146
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=35.83 E-value=1.3e+02 Score=30.23 Aligned_cols=66 Identities=29% Similarity=0.379 Sum_probs=35.1
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhh--hhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhh
Q 001254 127 IASLEKAVHEIRAESAETKVAAD--SKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKL 194 (1113)
Q Consensus 127 VadLEKAL~emr~E~AeiK~tse--sKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL 194 (1113)
|+-|++||.++++.|......++ .|+.+.+.=|...+.-+.++-.+=.. .+.+.-.+|..++..+|
T Consensus 45 v~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~--~KI~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 45 VAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDS--DKIAKRQKKLAEAKAEL 112 (115)
T ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHH
Confidence 67799999999999987664443 34444444444444433333333222 33333334444444444
No 147
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.41 E-value=8e+02 Score=31.64 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=55.2
Q ss_pred HhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHH
Q 001254 255 DHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE 334 (1113)
Q Consensus 255 e~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~aRE~~E 334 (1113)
.++++..+.+-.-+.-++.|+..+......+.+--.+|......+-.+..++......++...++|....++|..+....
T Consensus 483 S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 483 SYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred cHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666555556666666665555444444444444444444444445555555556666666666666666666666
Q ss_pred HHHHHHHhHHHHhhhhhhHH
Q 001254 335 IQKIIANHESALRVKQSEFE 354 (1113)
Q Consensus 335 IQKLldeh~a~L~~Kk~EFE 354 (1113)
++++-.+.+.++..-+.+.+
T Consensus 563 ~~~a~~ea~~~~~~a~~~~~ 582 (771)
T TIGR01069 563 KLELEKEAQEALKALKKEVE 582 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666665555554444333
No 148
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=34.92 E-value=2.4e+02 Score=27.19 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=34.0
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001254 465 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 519 (1113)
Q Consensus 465 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE 519 (1113)
+|..+.+-+..++=|=.|+----..|.+|++..|+.+..|..|.+.||++...|.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444454444556667777777777777777777777766553
No 149
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=34.43 E-value=5.6e+02 Score=32.96 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=27.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhh
Q 001254 141 SAETKVAADSKFAEARCMVENAQKKFAEAEAKLHA 175 (1113)
Q Consensus 141 ~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~a 175 (1113)
..+|+=.|+..|...+..+..++....+.-.++..
T Consensus 142 ~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~ 176 (782)
T PRK00409 142 EGEVKDSASEKLRGIRRQLRRKKSRIREKLESIIR 176 (782)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999999888877776655544
No 150
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=34.28 E-value=5.1e+02 Score=32.80 Aligned_cols=20 Identities=25% Similarity=0.425 Sum_probs=11.0
Q ss_pred hhhhhhhhHHHHHHHHHHHh
Q 001254 585 KMVHEHSEWFTKIQQERADF 604 (1113)
Q Consensus 585 kMehErs~~~eKiq~Erad~ 604 (1113)
+++|||..-.++|-++|+++
T Consensus 681 ~ve~eRr~eqeRihreReel 700 (940)
T KOG4661|consen 681 KVEEERRDEQERIHREREEL 700 (940)
T ss_pred HHHHhhcchhhhhhhhHHHH
Confidence 44455555555555555544
No 151
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.19 E-value=2.9e+02 Score=30.76 Aligned_cols=57 Identities=28% Similarity=0.393 Sum_probs=42.1
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001254 504 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 571 (1113)
Q Consensus 504 LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~kre 571 (1113)
+.++.+.|+.+-++=..+-+-.+.+...+.|..+.+. +|.|||..+-..+|+++...
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~-----------~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ-----------DEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhcc
Confidence 3445555555555666666777777788888777776 79999999999999988643
No 152
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.79 E-value=1.1e+03 Score=29.81 Aligned_cols=315 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred hhhHHHhHHHHHH-hhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 001254 393 EHDLEVQSRALVD-KEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKD 471 (1113)
Q Consensus 393 EqaLe~k~~~lkE-KEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E 471 (1113)
+++|.-+++++.. .-+++++.=+...+-+..|. .++.....+...++....|+.|+.|..+.+.+-+.+-.+-..
T Consensus 219 ~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~ 294 (581)
T KOG0995|consen 219 EDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEK 294 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001254 472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAK---FEAEWEMIDEKREELRKEAERVAVERVVVSK 548 (1113)
Q Consensus 472 ~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKek---FE~EWE~LDEKRael~KEa~~I~eEre~lek 548 (1113)
.| ..|+.||+..=.+-+.|.++.|+|+.+-++ --++.+.+--=|.+|.+++.+|.-++..+.+
T Consensus 295 ~l--------------~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 295 KL--------------EMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHH-HHHhhhhhhh----------------hHHHHHHHHHHHhhhhhHhh
Q 001254 549 SLKDERDSLRQERDAMRDQHKRDVDSLNREREE-FMNKMVHEHS----------------EWFTKIQQERADFLLGIEMQ 611 (1113)
Q Consensus 549 ~~~~E~erLK~EK~~~r~~~krelEsL~~ekEs-F~~kMehErs----------------~~~eKiq~Erad~l~d~Emq 611 (1113)
-..+...-+..-...+...+..=...+..=.=. -.+.|--++. ......-.+-+.-++-.++-
T Consensus 361 ~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~ 440 (581)
T KOG0995|consen 361 EVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENE 440 (581)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHH
Q 001254 612 KRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELN 691 (1113)
Q Consensus 612 kreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~ 691 (1113)
+.-|+..+.+.---|+ .++.+=...+.+-..-...-+-.|+-++.++..-..|+..|+++-.-.++.-..--.+-.+.=
T Consensus 441 ~~tLq~~~~~~~~~i~-E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v 519 (581)
T KOG0995|consen 441 LETLQEHFSNKASTIE-EKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELV 519 (581)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001254 692 NSIE-ELMVQRQKLEEQRQLLHADREEIQAESERLK 726 (1113)
Q Consensus 692 kdIe-eL~~ls~KLk~QRE~~~~ERe~fl~~vEklK 726 (1113)
+.|+ +|.-...-....|.-.++.=.++|.+|=+++
T Consensus 520 ~s~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k 555 (581)
T KOG0995|consen 520 KSIELELDRMVATGEEERQKIAKQLFAVIDQISDFK 555 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 153
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=32.78 E-value=8.2e+02 Score=28.20 Aligned_cols=65 Identities=25% Similarity=0.378 Sum_probs=44.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhh--------------hhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 001254 643 REFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMD--------------RQRRDREWAELNNSIEELMVQRQKLEEQ 707 (1113)
Q Consensus 643 ~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~--------------ke~le~e~aEm~kdIeeL~~ls~KLk~Q 707 (1113)
.-|++=|.+=.....||+.|.--+.+|++|....-.- +..++.+..-+.+-|+.|..|-+-|+.+
T Consensus 230 ~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 230 DTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4577788888999999999999999999998765444 3444444444444444444444444444
No 154
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=32.41 E-value=4.6e+02 Score=35.03 Aligned_cols=12 Identities=8% Similarity=-0.263 Sum_probs=5.0
Q ss_pred HHHHHHHHhhhh
Q 001254 717 EIQAESERLKKL 728 (1113)
Q Consensus 717 ~fl~~vEklK~c 728 (1113)
.++.-++.-..|
T Consensus 528 ~~~~~~~~~~~~ 539 (1021)
T PTZ00266 528 YFLKGMENGLSA 539 (1021)
T ss_pred hhhhhccccccc
Confidence 344444443333
No 155
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=32.05 E-value=8.6e+02 Score=28.22 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=42.8
Q ss_pred HhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHH
Q 001254 190 AERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEK 269 (1113)
Q Consensus 190 aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEk 269 (1113)
++-.|.+++.|-.+|.-+---+.+|.++....+..||-..--- .-+.+.-|.....+-.|=-++ -+.|.|-.-
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q---~s~Leddlsqt~aikeql~ky----iReLEQaND 122 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQ---ESQLEDDLSQTHAIKEQLRKY----IRELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHhcc
Confidence 4445666666666666666666677777776666666322211 222233333333333222233 345556666
Q ss_pred HHHHHhhcH
Q 001254 270 ELEASRANV 278 (1113)
Q Consensus 270 eLEe~kkki 278 (1113)
+||-++...
T Consensus 123 dLErakRat 131 (333)
T KOG1853|consen 123 DLERAKRAT 131 (333)
T ss_pred HHHHhhhhh
Confidence 677666543
No 156
>PRK11519 tyrosine kinase; Provisional
Probab=31.19 E-value=1.1e+03 Score=29.79 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=28.8
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhH
Q 001254 146 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 189 (1113)
Q Consensus 146 ~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~ 189 (1113)
...+.|...|...++-+++...++..+|..|+..++.--+.+..
T Consensus 256 ~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~ 299 (719)
T PRK11519 256 QNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDS 299 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44556666666777777777777777777777766665555443
No 157
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=30.75 E-value=8.1e+02 Score=27.52 Aligned_cols=8 Identities=50% Similarity=0.405 Sum_probs=2.5
Q ss_pred hHHHHHHh
Q 001254 424 LIAFEKEA 431 (1113)
Q Consensus 424 LkaeEK~l 431 (1113)
|...+|.+
T Consensus 199 L~~~ek~~ 206 (297)
T PF02841_consen 199 LTEKEKEI 206 (297)
T ss_dssp S-HHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 158
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=30.34 E-value=8e+02 Score=27.30 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHh
Q 001254 130 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIA 209 (1113)
Q Consensus 130 LEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerl 209 (1113)
|+-++++|+.++.+++-+...-++..+.+-..+..=...++.=-..|...+.-.+ +.=||+-.- ++-
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~-----------E~LAr~al~--~~~ 95 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN-----------EDLAREALE--EKQ 95 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHH--HHH
Confidence 7888999999999988888777777777766666655555554444544444333 223333222 344
Q ss_pred HhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhh
Q 001254 210 SFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQT 248 (1113)
Q Consensus 210 Sf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~ 248 (1113)
++..-+.+++..+..+++.+-..++.+...+..+.+...
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777888877777777777777777777766553
No 159
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=29.74 E-value=9.8e+02 Score=28.17 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhH
Q 001254 693 SIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLK 732 (1113)
Q Consensus 693 dIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ckncg 732 (1113)
|||.|-+=.+-|+.+=.++..|++=...-|-+||+.=+|+
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERK 229 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999877664
No 160
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=29.38 E-value=1.3e+02 Score=29.64 Aligned_cols=68 Identities=29% Similarity=0.266 Sum_probs=46.6
Q ss_pred hhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhH
Q 001254 119 TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 189 (1113)
Q Consensus 119 ALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~ 189 (1113)
.|.-|+.=...+|.....|-.|.-+. +.+=|.+||.||+.+......++.|...++..+.++......
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeL---TasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~ 69 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEEL---TASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLES 69 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566778888887777763 345579999999988887777777776666666655544333
No 161
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.29 E-value=5.1e+02 Score=30.59 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=33.6
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001254 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKS 450 (1113)
Q Consensus 396 Le~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~ 450 (1113)
+..+-..|++.|++|-+|+..||.-- .-+.++|+..+.+|..|.-.+..-|+
T Consensus 350 vkekE~elke~Ekel~~kf~~lkr~h---~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLKRLH---QEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567788888888887776532 23445677777777777666655444
No 162
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=29.13 E-value=7.2e+02 Score=26.38 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=38.4
Q ss_pred hhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhh-------hHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001254 382 LGQREESLLEREHDLEVQSRALVDKEKDLVERSHL-------LEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQK 454 (1113)
Q Consensus 382 l~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~-------LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK 454 (1113)
+...|+..-...++|..+...|.+-.+-|..+++. |.+.+-.|+...+.+ -..+++-+..++.-+++
T Consensus 80 l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l------~er~~e~l~~~~e~ver 153 (158)
T PF09744_consen 80 LLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL------HERERELLRKLKEHVER 153 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555544444 444444444444444 34566777788888887
Q ss_pred hhhh
Q 001254 455 SLSS 458 (1113)
Q Consensus 455 ~~a~ 458 (1113)
.+..
T Consensus 154 ~k~~ 157 (158)
T PF09744_consen 154 QKDE 157 (158)
T ss_pred HHhc
Confidence 7654
No 163
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.11 E-value=5.4e+02 Score=24.97 Aligned_cols=58 Identities=22% Similarity=0.385 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001254 483 LSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 544 (1113)
Q Consensus 483 ~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre 544 (1113)
|..|+++.++=||.+ ..|.-|+++||.+......|-..+-.-|.+|..+...+..++-
T Consensus 6 leqLE~KIqqAvdtI----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 6 FEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456888888888876 5677788888876666555555555555555554444444433
No 164
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=28.95 E-value=1.2e+03 Score=28.72 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=24.2
Q ss_pred hhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHH
Q 001254 286 NEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQET 326 (1113)
Q Consensus 286 k~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEK 326 (1113)
......|..+--.++.|++.+-+++..|.--|..+.-||.-
T Consensus 234 ~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqe 274 (499)
T COG4372 234 QQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQE 274 (499)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666667777666666666666555555443
No 165
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=28.68 E-value=8.6e+02 Score=27.16 Aligned_cols=120 Identities=26% Similarity=0.373 Sum_probs=66.7
Q ss_pred HHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhH
Q 001254 307 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQRE 386 (1113)
Q Consensus 307 ~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~E 386 (1113)
+.+-..|-++|.+|-..+++..+-|+.- ..|..+ + +-+...+++ |...+
T Consensus 84 eEVarkL~iiE~dLE~~eeraE~~Es~~-~eLeEe---------------~----~~~~~nlk~-----------l~~~e 132 (205)
T KOG1003|consen 84 EEVARKLVIIEGELERAEERAEAAESQS-EELEED---------------L----RILDSNLKS-----------LSAKE 132 (205)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHH---------------H----HHhHhHHHH-----------HHHHH
Confidence 3455678888999988888888777532 112111 1 111222222 33345
Q ss_pred HHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 001254 387 ESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 460 (1113)
Q Consensus 387 ekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e 460 (1113)
+++..++-..+.+++.+.+|=+.-+.+-... |++....+|.+..=-..|...++....++.+|-.+..+++
T Consensus 133 e~~~q~~d~~e~~ik~ltdKLkEaE~rAE~a---ERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 133 EKLEQKEEKYEEELKELTDKLKEAETRAEFA---ERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555556666666655555444444443 3555555555555455566666666666666666665554
No 166
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=27.96 E-value=6.4e+02 Score=26.02 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=46.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001254 641 KMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQA 720 (1113)
Q Consensus 641 k~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~ 720 (1113)
|+.=+..+......+..||+++.++.+|+.+|-.-.+. ..+..++..+...|..+..-+..++.
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~----------------~~~~~i~~q~~~e~~~r~e~k~~l~~ 81 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNA----------------QQIQSIQQQFEQEKQERLEQKNQLLQ 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666777888889999999999999888554433 33444445555555555555566666
Q ss_pred HHHHhhhhh
Q 001254 721 ESERLKKLE 729 (1113)
Q Consensus 721 ~vEklK~ck 729 (1113)
+++++..++
T Consensus 82 ql~qv~~L~ 90 (131)
T PF11068_consen 82 QLEQVQKLE 90 (131)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHhcCC
Confidence 666665554
No 167
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=27.75 E-value=4.9e+02 Score=29.79 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=65.4
Q ss_pred hhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh----hhHHHHHHH
Q 001254 414 SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA----GELSVLEIK 489 (1113)
Q Consensus 414 sk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER----~E~lrLQse 489 (1113)
--.+.+-|+.|+..=+.+ ..++.+=+..+.++..|--.+-+-|+.++..+...+.+|..+++=| +||-.|+.+
T Consensus 157 ~~e~~~iE~~l~~ai~~~---~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~E 233 (267)
T PF10234_consen 157 PLELNEIEKALKEAIKAV---QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEE 233 (267)
T ss_pred CcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 334555666666655555 4455555666777777777777778888888888888999988877 789999999
Q ss_pred HHHHHHHHHHHH---HHhHHhhHHH
Q 001254 490 LKEELDVVRAQK---LELMVETDKL 511 (1113)
Q Consensus 490 LKeEId~~R~Qk---e~LlkEae~L 511 (1113)
|++--+.|=..- ..|..+.|+.
T Consensus 234 L~~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 234 LQKLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999877664432 3444444443
No 168
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.59 E-value=6.3e+02 Score=27.68 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhHHhhHHH
Q 001254 490 LKEELDVVRAQKLELMVETDKL 511 (1113)
Q Consensus 490 LKeEId~~R~Qke~LlkEae~L 511 (1113)
|++++...+.+-..|-++.+++
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 169
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.35 E-value=1.1e+03 Score=27.80 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=54.0
Q ss_pred hhhHhhHhhHHHHhHhHHHHHHHhhcHHH--HHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001254 252 EREDHILSKLQELSRKEKELEASRANVEE--KFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 329 (1113)
Q Consensus 252 qREe~~~e~~~~l~~kEkeLEe~kkkie~--~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~a 329 (1113)
.|++.+.++.+.-...++++|+....--- -...|+-.-..+..|-.--..+| +..|..-++.+-.||+++-.
T Consensus 345 kr~eeaeerqraeekeq~eaee~~ra~kr~egvkllkf~fekieareerrkqke------eeklk~e~qkikeleek~~e 418 (445)
T KOG2891|consen 345 KREEEAEERQRAEEKEQKEAEELERARKREEGVKLLKFEFEKIEAREERRKQKE------EEKLKAEEQKIKELEEKIKE 418 (445)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666654432211 11333333334443332222222 23455556778889999999
Q ss_pred hhhHHHHHHHHHhHHHHhhh
Q 001254 330 KESNEIQKIIANHESALRVK 349 (1113)
Q Consensus 330 RE~~EIQKLldeh~a~L~~K 349 (1113)
-|..-.+-|+.-|.+-|...
T Consensus 419 eedal~~all~~qeirl~~~ 438 (445)
T KOG2891|consen 419 EEDALLLALLNLQEIRLIAE 438 (445)
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 99988888888888776543
No 170
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=26.87 E-value=1.4e+03 Score=29.01 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=17.6
Q ss_pred HhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHh
Q 001254 285 LNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQK 319 (1113)
Q Consensus 285 Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkE 319 (1113)
|..+...+..++..+...|.++..++...+..+.-
T Consensus 351 L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 351 LEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555555444433
No 171
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=26.73 E-value=1.7e+03 Score=29.89 Aligned_cols=236 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001254 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 195 (1113)
Q Consensus 116 LkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~ 195 (1113)
|-.+.+--..-++-++-.|.+|..+.++.++.++.-+.+.. ++-.-.+-|.+...-.-.|.+...+++++-.
T Consensus 349 l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e--------qLr~elaql~a~r~q~eka~~~~ee~e~~~l 420 (980)
T KOG0980|consen 349 LENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE--------QLRNELAQLLASRTQLEKAQVLVEEAENKAL 420 (980)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHhhhhhHHHHHHhHhhhh-------hhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhH
Q 001254 196 EVVAREDDLSRRIASFKAD-------CEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKE 268 (1113)
Q Consensus 196 eVEaRE~~LrRerlSf~~E-------~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kE 268 (1113)
-.+.|=..|..-.--|..+ ..-.-+.+.-++++.-+.++...+....|.+.++-...=+-...+....+...+
T Consensus 421 ~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~ 500 (980)
T KOG0980|consen 421 AAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLR 500 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhH--HHHHHHHh----------hhhhHHHH
Q 001254 269 KELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKL--LVSQETLA----------SKESNEIQ 336 (1113)
Q Consensus 269 keLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkEL--l~leEKL~----------aRE~~EIQ 336 (1113)
.+|..+...++.--.++..-...-+..++.|...++.-|..-..+-.+|.|+ +.++..-+ +-|-...|
T Consensus 501 ~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~si~ql~l~~~~~~ea~~tQ 580 (980)
T KOG0980|consen 501 QELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERSINQLELDSSASTEAGITQ 580 (980)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcccccchHHHHHH
Q ss_pred HHHHHhHHHHhhhhhhHHHHHHH
Q 001254 337 KIIANHESALRVKQSEFEAELAI 359 (1113)
Q Consensus 337 KLldeh~a~L~~Kk~EFElElE~ 359 (1113)
-..+....+|+.-.-.-+-.|..
T Consensus 581 ~~~~~~~~il~~~~~~~~q~lq~ 603 (980)
T KOG0980|consen 581 LQDDLNDPILDGSLASGIQALQN 603 (980)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH
No 172
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=26.69 E-value=1.3e+03 Score=28.63 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=17.8
Q ss_pred hhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHH
Q 001254 249 LLNEREDHILSKLQELSRKEKELEASRANVEEKFK 283 (1113)
Q Consensus 249 ~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~ 283 (1113)
+...++.-+..+...+..+|++-+++.++......
T Consensus 186 l~~~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ 220 (489)
T PF05262_consen 186 LREDKDKGIDKRKDMVDIKEREAEEAAKRAQEAKK 220 (489)
T ss_pred HhhccccChhhhhhhHHHHHHHhHHHHHHHHHHHH
Confidence 34444444555555555566666555554443333
No 173
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=26.61 E-value=5.2e+02 Score=23.95 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHh
Q 001254 591 SEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELES 628 (1113)
Q Consensus 591 s~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~ 628 (1113)
..+...+...+..|+..|+-........|......++.
T Consensus 49 ~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~ 86 (127)
T smart00502 49 DELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ 86 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433
No 174
>PRK11281 hypothetical protein; Provisional
Probab=26.42 E-value=1.8e+03 Score=30.13 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=61.4
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHH-----------HhhcHHHHHHHHh
Q 001254 218 KEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEA-----------SRANVEEKFKALN 286 (1113)
Q Consensus 218 ~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe-----------~kkkie~~~~~Lk 286 (1113)
.|..+..-...|.+|+..|.+....|...+...-..-..+.++.+.+......|.. .+..+..+...|+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 55566666667777777777777666666655555555556666666665555532 2333334444443
Q ss_pred hhhhhhhHhHHHhhhh----HHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHH
Q 001254 287 EEKSNLDLTLVSLLKR----EEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 339 (1113)
Q Consensus 287 ~ke~dl~~rl~~l~~r----Eee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLl 339 (1113)
-+-+-...-+.+-+.+ -...+-....+..-|..+..||+.++.|=..+-++-+
T Consensus 206 ~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~ 262 (1113)
T PRK11281 206 AQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTV 262 (1113)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222222221111 1122333344455555666666666665555544433
No 175
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=26.21 E-value=8.5e+02 Score=26.31 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=21.2
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Q 001254 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247 (1113)
Q Consensus 208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q 247 (1113)
+.++..-...++.++..++..+...+..|.+.+..|.+.+
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k 133 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555443
No 176
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.85 E-value=8.9e+02 Score=26.38 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001254 560 ERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 608 (1113)
Q Consensus 560 EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~ 608 (1113)
.-...++.|+.-++.|..-+..|+..|.. =-..|-.+..+|-+|+.++
T Consensus 168 ~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~-~~~~~Q~lEe~Ri~~lk~~ 215 (239)
T cd07647 168 SAEEADSAYKSSIGCLEDARVEWESEHAT-ACQVFQNMEEERIKFLRNA 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34457889999999999999999999985 3344455666777777654
No 177
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=25.07 E-value=8.5e+02 Score=27.80 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=17.8
Q ss_pred hHhhHHHHhHhHHHHHHHhhcHHHHHHHHhh
Q 001254 257 ILSKLQELSRKEKELEASRANVEEKFKALNE 287 (1113)
Q Consensus 257 ~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ 287 (1113)
.+.....+..++++++-++...+.....+++
T Consensus 273 l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~ 303 (362)
T TIGR01010 273 LNEQTADYQRLVLQNELAQQQLKAALTSLQQ 303 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666655555443
No 178
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.89 E-value=7.8e+02 Score=25.42 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=10.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001254 477 KSEAGELSVLEIKLKEELDVVRAQKLEL 504 (1113)
Q Consensus 477 eeER~E~lrLQseLKeEId~~R~Qke~L 504 (1113)
..+..++......+..++...+.....+
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~ 121 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDLQEL 121 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333444444333333333
No 179
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.45 E-value=91 Score=33.19 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=1.8
Q ss_pred HHHHHHHhHHhhHHHH
Q 001254 497 VRAQKLELMVETDKLQ 512 (1113)
Q Consensus 497 ~R~Qke~LlkEae~Lk 512 (1113)
+|..-+-|..|+-|||
T Consensus 29 L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 29 LREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHCH-----------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 180
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.31 E-value=7.6e+02 Score=30.86 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=70.7
Q ss_pred hhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHH
Q 001254 193 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (1113)
Q Consensus 193 KL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLE 272 (1113)
...|.++||+.++ .+|....+-.-..+..-.--......-.+-...||.-.........+.+.+-.+.+.+++.+|+
T Consensus 403 ~~~E~esRE~LIk---~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 403 ESPEEESREQLIK---SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred cCCchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788885533 3444444443333333333333344444445555555555556666778888889999999999
Q ss_pred HHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHH
Q 001254 273 ASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIERE 310 (1113)
Q Consensus 273 e~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~ 310 (1113)
..+..-+.-+..+-+--..++.+|+ ...++++.++
T Consensus 480 TTr~NYE~QLs~MSEHLasmNeqL~---~Q~eeI~~LK 514 (518)
T PF10212_consen 480 TTRRNYEEQLSMMSEHLASMNEQLA---KQREEIQTLK 514 (518)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 9999999998888887777766554 3444555544
No 181
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=24.05 E-value=1.4e+03 Score=28.05 Aligned_cols=126 Identities=17% Similarity=0.285 Sum_probs=77.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhh----HHHHHHhcchhHHhhhhHHHhhhhhHHH--
Q 001254 132 KAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAE----SLQAEANRYHRSAERKLQEVVAREDDLS-- 205 (1113)
Q Consensus 132 KAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAe----ak~AEa~Rk~s~aeRKL~eVEaRE~~Lr-- 205 (1113)
..|+.||.+.|-++.++.+-.++-...|.++-.|...+=. .++. |-.|=++.-+..+......+-++=|+|+
T Consensus 155 ~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~--~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~ 232 (426)
T smart00806 155 AELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKS--SSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDI 232 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888887777777788877777655432 1111 1112111122222222222222222222
Q ss_pred -----------------HHHhHhhhhhhhHHHHHHHHHhchH----HHHHHHHHHHHHHHHHhhhhhhhhHhhHh
Q 001254 206 -----------------RRIASFKADCEEKEREIIRERQSLS----DRKKILQQEHERLLDAQTLLNEREDHILS 259 (1113)
Q Consensus 206 -----------------RerlSf~~E~ea~E~~~~~qRe~L~----eweKkLqe~eeRL~e~q~~LNqREe~~~e 259 (1113)
++.-+...|..+..+++.+..+.+. -|.|.-...=+.+|+.|..||--|+-+..
T Consensus 233 vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~D 307 (426)
T smart00806 233 IEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIAD 307 (426)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555667777777777666665 48888777788999999999988887654
No 182
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=23.99 E-value=1.5e+03 Score=29.95 Aligned_cols=96 Identities=23% Similarity=0.299 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhH
Q 001254 514 EKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEW 593 (1113)
Q Consensus 514 eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~ 593 (1113)
|..--.+.-|+|--|.++|-|..+...+|..+|.+.++.=...|+. .+.+|.-+...++++=++-+.+|++=+
T Consensus 442 ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~----~kq~~d~e~~rik~ev~eal~~~k~~q--- 514 (861)
T PF15254_consen 442 QLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLE----NKQQFDIETTRIKIEVEEALVNVKSLQ--- 514 (861)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 3333445556677777777777777777777777776654444443 345566666778888888888887544
Q ss_pred HHHHHHHHHHhhhhhHhhhhhhH
Q 001254 594 FTKIQQERADFLLGIEMQKRDLE 616 (1113)
Q Consensus 594 ~eKiq~Erad~l~d~EmqkreLE 616 (1113)
|.-...|...++++|.++-|+-|
T Consensus 515 ~kLe~sekEN~iL~itlrQrDaE 537 (861)
T PF15254_consen 515 FKLEASEKENQILGITLRQRDAE 537 (861)
T ss_pred hhHHHHHhhhhHhhhHHHHHHHH
Confidence 33445677777777777766654
No 183
>KOG2350 consensus Zn-finger protein joined to JAZF1 (predicted suppressor) [General function prediction only]
Probab=23.98 E-value=96 Score=34.13 Aligned_cols=50 Identities=22% Similarity=0.149 Sum_probs=36.4
Q ss_pred cCCCCCcchhHHHHHHHHHhccCCCCcccccCCCCCCCCCCCccc-cc-----cccCCccccc
Q 001254 798 ASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASL-TI-----NSRKRQPVRY 854 (1113)
Q Consensus 798 ~SP~s~g~~SWlrKCTskIFk~SP~Kk~~~~~e~~~~s~~~~~~~-~~-----~~~k~q~iry 854 (1113)
.+|++.+|+-=+-+||.++|.-+-.-++++ |+++...+ +. -.+-+||.++
T Consensus 55 ~~~~~~~p~t~i~~~~p~~~att~k~~aer-------sd~~v~~l~lhkRqffHS~t~qPl~l 110 (221)
T KOG2350|consen 55 NGPVKRTPITHILVCRPKRTATTMKEFAER-------SDGEVEQLRLHKRQFFHSDTCQPLRL 110 (221)
T ss_pred CCCCCCCcchhhhccchHhhhhcccccccc-------cccceeeeccccceeeeccccCCCCH
Confidence 567777888889999999999877555555 56666655 33 4567788876
No 184
>PF14992 TMCO5: TMCO5 family
Probab=23.63 E-value=1.2e+03 Score=27.12 Aligned_cols=63 Identities=21% Similarity=0.202 Sum_probs=30.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhh
Q 001254 354 EAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLL 417 (1113)
Q Consensus 354 ElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~L 417 (1113)
+-|+....-.+++. +..-.-.+.+|.++...|..-++-|..=+--+..+.+..+.++.+...+
T Consensus 38 e~Eit~~~~~~~~~-e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 38 EREITKMDHIADRS-EEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHHHHHccccCch-hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 34444444444433 2222223666777766665544444333333344466666666555553
No 185
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=23.01 E-value=28 Score=43.20 Aligned_cols=51 Identities=33% Similarity=0.528 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcch
Q 001254 129 SLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYH 187 (1113)
Q Consensus 129 dLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~ 187 (1113)
.+++-+.+||.++.+.-..| .+|.+|=+.+ ..+-.+-.-|+-+.+++.+|.
T Consensus 271 ~le~ei~~L~q~~~eL~~~A----~~a~~LrDEl----D~lR~~a~r~~klE~~ve~YK 321 (713)
T PF05622_consen 271 ELEKEIDELRQENEELQAEA----REARALRDEL----DELREKADRADKLENEVEKYK 321 (713)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666533222 2344443322 223233333445566666663
No 186
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=22.57 E-value=1.8e+03 Score=28.89 Aligned_cols=165 Identities=17% Similarity=0.205 Sum_probs=96.2
Q ss_pred hhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhh--------------hhhHHHHHHhHHHHH
Q 001254 69 LLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKT--------------LGVEKECIASLEKAV 134 (1113)
Q Consensus 69 LLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKA--------------LgvEKqCVadLEKAL 134 (1113)
-|+-.+..|.-+++++..+++-. +-+ -..|..+.-.-..++.. ......|...|+.=|
T Consensus 527 DLLsgkadLE~fieE~s~tLdwI---ls~-----~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eel 598 (769)
T PF05911_consen 527 DLLSGKADLERFIEEFSLTLDWI---LSN-----CFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEEL 598 (769)
T ss_pred HHhcchhHHHHHHHHHHHHHHHH---HHc-----cchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHH
Confidence 35666777777888888777744 222 22222211111111111 123344444555555
Q ss_pred HHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhh-------hHHHhhhhhHHHHH
Q 001254 135 HEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERK-------LQEVVAREDDLSRR 207 (1113)
Q Consensus 135 ~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRK-------L~eVEaRE~~LrRe 207 (1113)
..|..+- -.-+..|+.+..-+....-++.++|.+|....+.++-++-..+.++.- +..++.|=..+.-+
T Consensus 599 E~le~eK----~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E 674 (769)
T PF05911_consen 599 EKLESEK----EELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAE 674 (769)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 5555443 334556677777777777777777777777777777666666666553 34445665556666
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 001254 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLD 245 (1113)
Q Consensus 208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e 245 (1113)
......-..+++.+|...|..-.|-.-+++..++.|.-
T Consensus 675 ~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r 712 (769)
T PF05911_consen 675 AEELQSKISSLEEELEKERALSEELEAKCRELEEELER 712 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHh
Confidence 66666667777777777777766666666666555543
No 187
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=22.12 E-value=1.1e+03 Score=26.16 Aligned_cols=112 Identities=17% Similarity=0.272 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 001254 490 LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHK 569 (1113)
Q Consensus 490 LKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~k 569 (1113)
+...++++..++.-..+.++ .=|.+|+..+-..+.=+..++. +....-.+ .++++. .=-++.+..-...++.|+
T Consensus 105 ~e~~~ek~~K~~~~~~k~~~---ksKk~Ye~~Cke~~~a~~~~~~-~~~~~~~k-e~~K~~-~Kl~K~~~~~~k~~~~Y~ 178 (240)
T cd07672 105 IELIMDAIHKQRAMQFKKTM---ESKKNYEQKCRDKDEAEQAVNR-NANLVNVK-QQEKLF-AKLAQSKQNAEDADRLYM 178 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh-ccCCCCHH-HHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45566776666666666554 4566788777654433322221 11110000 111111 123456667778899999
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 001254 570 RDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 608 (1113)
Q Consensus 570 relEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~ 608 (1113)
.-++.|..-+..|+..|. .--..|..+.-||-+|+++.
T Consensus 179 ~~v~~l~~~~~~w~~~~~-~~c~~fq~lEeeRi~f~k~~ 216 (240)
T cd07672 179 QNISVLDKIREDWQKEHV-KACEFFEKQECERINFFRNA 216 (240)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 55556667788888888764
No 188
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.96 E-value=2.3e+03 Score=29.83 Aligned_cols=156 Identities=17% Similarity=0.100 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhH
Q 001254 238 QEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKE 317 (1113)
Q Consensus 238 e~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KE 317 (1113)
..++.|.++|...--=|..++...+.+..+++-+++++.++-.--.. -..-|+.+.+.+.....-|
T Consensus 1595 ~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~--------------A~~a~~~a~sa~~~A~~a~ 1660 (1758)
T KOG0994|consen 1595 LAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAE--------------AKQAEKTAGSAKEQALSAE 1660 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445556666666666666666665543221111 1112334444444445555
Q ss_pred HhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHH
Q 001254 318 QKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLE 397 (1113)
Q Consensus 318 kELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe 397 (1113)
+.|..|+..+..-.+-.-.+....+.|.-++++.- +.-+|++ .+-.-+=.+|+.+|-.....+++|+
T Consensus 1661 q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~-----~eA~~Ll--------~~a~~kl~~l~dLe~~y~~~~~~L~ 1727 (1758)
T KOG0994|consen 1661 QGLEILQKYYELVDRLLEKRMEGSQAARERAEQLR-----TEAEKLL--------GQANEKLDRLKDLELEYLRNEQALE 1727 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH-----HHHHHHH--------HHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 55556655554443322222222222211111100 0011111 1112222356677777778888888
Q ss_pred HhHHHHHHhhhhHHHHhhhhHHH
Q 001254 398 VQSRALVDKEKDLVERSHLLEEK 420 (1113)
Q Consensus 398 ~k~~~lkEKEkdl~~Ksk~LKEk 420 (1113)
.+...|.-.|+.+..-+..++++
T Consensus 1728 ~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1728 DKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhh
Confidence 88888888888888888777765
No 189
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.89 E-value=6.2e+02 Score=27.73 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=33.7
Q ss_pred HHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhh
Q 001254 241 ERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 292 (1113)
Q Consensus 241 eRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl 292 (1113)
++..+.+..+++++..+++-.....++..+|+.++.+++.....+...++++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666666777777777777777777777766655555555544
No 190
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=21.89 E-value=1.9e+03 Score=28.88 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHH--hHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001254 364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEV--QSRALVDKEKDLVERSHLLEEKENKLI 425 (1113)
Q Consensus 364 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~--k~~~lkEKEkdl~~Ksk~LKEkEksLk 425 (1113)
++++|.+|..++-+-|--+...-+.+.--|..|-. +++++-+-|-.|..+.+++---+...-
T Consensus 96 lE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~ 159 (916)
T KOG0249|consen 96 LENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSG 159 (916)
T ss_pred HHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhc
Confidence 45556666555555444444333333333333322 266777778888887777654444333
No 191
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.66 E-value=1.2e+03 Score=27.51 Aligned_cols=135 Identities=15% Similarity=0.240 Sum_probs=78.4
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHH---HHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhh
Q 001254 333 NEIQKIIANHESALRVKQSEFEAEL---AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKD 409 (1113)
Q Consensus 333 ~EIQKLldeh~a~L~~Kk~EFElEl---E~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkd 409 (1113)
.|+.+++-.-++...+.-.+-=.=+ .+-++++..-+..-..-+.+--.+|..-=++|..||.-|+.+++-+-..=..
T Consensus 198 lEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~ 277 (359)
T PF10498_consen 198 LEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRS 277 (359)
T ss_pred HHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444444444444444444333 3445667777777777788888888888899999999999998888776555
Q ss_pred HHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHH
Q 001254 410 LVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEK--KKQVNCAK 470 (1113)
Q Consensus 410 l~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q--~~qi~ee~ 470 (1113)
...+++.++++=+. .-..+......|-.=.++|...|.+++.=-+++.+. +-+|.++.
T Consensus 278 ~~~~ls~~~~~y~~---~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl 337 (359)
T PF10498_consen 278 AQDELSEVQEKYKQ---ASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQAL 337 (359)
T ss_pred HHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 55555555544433 333343334444444445555555555444444332 23444443
No 192
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.36 E-value=5.3e+02 Score=27.04 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001254 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 522 (1113)
Q Consensus 488 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 522 (1113)
.++++||+++..+-....+|++.||.|-+.+.+|.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777777777778888899999988888875
No 193
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.27 E-value=1.3e+03 Score=26.49 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=33.2
Q ss_pred HhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHh
Q 001254 258 LSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 328 (1113)
Q Consensus 258 ~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~ 328 (1113)
++..+.|.+...+++.+...+..+...+.+--.=+..+-+....-|.++-..++.|+.-+..+..+.+++.
T Consensus 47 ~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 47 VEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555554444433332222222222223333344555555666666666655555544
No 194
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.17 E-value=6e+02 Score=31.66 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred hhhhhHHHHHhhhhhHHHhHHHH--HHhhhhHHHHhhhhHHHHh------hhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001254 381 DLGQREESLLEREHDLEVQSRAL--VDKEKDLVERSHLLEEKEN------KLIAFEKEADLKKSLLQKEKEEVNIIKSDL 452 (1113)
Q Consensus 381 el~h~Eekl~kREqaLe~k~~~l--kEKEkdl~~Ksk~LKEkEk------sLkaeEK~le~ek~~L~~eKEel~~lK~dl 452 (1113)
...+.+..+.++++..+.....| ++.=+.+..+++.|+. + .+....+++..=+..+.++++.+..++.++
T Consensus 165 ~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~--~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 165 TAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK--KDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhHHHHHHHHHHHhh
Q 001254 453 QKSLSSLDEKKKQVNCAKDK 472 (1113)
Q Consensus 453 EK~~a~~e~q~~qi~ee~E~ 472 (1113)
+..+..+..+...+..+-++
T Consensus 243 ~~~~~~~~~~~~~lk~ap~~ 262 (555)
T TIGR03545 243 QNDKKQLKADLAELKKAPQN 262 (555)
T ss_pred HHhHHHHHHHHHHHHhccHh
No 195
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=21.16 E-value=2.4e+03 Score=29.66 Aligned_cols=136 Identities=16% Similarity=0.169 Sum_probs=88.0
Q ss_pred HhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhh
Q 001254 603 DFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQR 682 (1113)
Q Consensus 603 d~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~ 682 (1113)
|-+++--.++++|+..++.+ +|..+.+..+.+.......|+... ...++-++..|..++.-++..+..
T Consensus 992 ~~l~~~~~~er~l~dnl~~~------~l~~q~~e~~re~~~ld~Qi~~~~------~~~~~ee~~~L~~~~~~l~se~~~ 1059 (1294)
T KOG0962|consen 992 QKIRNQYQRERNLKDNLTLR------NLERKLKELERELSELDKQILEAD------IKSVKEERVKLEEEREKLSSEKNL 1059 (1294)
T ss_pred HHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHhhhHhhH
Confidence 33556666777777777654 344445555566666666666554 556788999999999999999999
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhHhHHhhhhHhhhh--hcccchh
Q 001254 683 RDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQ--RSRLEHS 751 (1113)
Q Consensus 683 le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ckncg~~~~~~vLSdlq--~sd~~~~ 751 (1113)
+-++..++...|.-+...=.+ .+-+......|..|+..---=.+|+++|...--.-.++|| ...|+.-
T Consensus 1060 ~lg~~ke~e~~i~~~k~eL~~-~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Aim~fHs~KMeei 1129 (1294)
T KOG0962|consen 1060 LLGEMKQYESQIKKLKQELRE-KDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKAIMQFHSMKMEEI 1129 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876543221 1222333344555554444445677777777655445565 5666644
No 196
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.74 E-value=7.6e+02 Score=23.75 Aligned_cols=64 Identities=23% Similarity=0.485 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001254 484 SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDA 563 (1113)
Q Consensus 484 lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~ 563 (1113)
-.|+.+.++-||.+- .|.-|+++|| ||...|+.|.-.....|++|++ |-+.||+|-.+
T Consensus 7 ekLE~KiqqAvdTI~----LLQmEieELK--------------Eknn~l~~e~q~~q~~reaL~~----eneqlk~e~~~ 64 (79)
T COG3074 7 EKLEAKVQQAIDTIT----LLQMEIEELK--------------EKNNSLSQEVQNAQHQREALER----ENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHH--------------HHhhHhHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 467888999999874 4555565554 6777788888888888888764 67778888777
Q ss_pred HHHHHH
Q 001254 564 MRDQHK 569 (1113)
Q Consensus 564 ~r~~~k 569 (1113)
-++.+.
T Consensus 65 WQerlr 70 (79)
T COG3074 65 WQERLR 70 (79)
T ss_pred HHHHHH
Confidence 666554
No 197
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=20.65 E-value=1.9e+03 Score=28.48 Aligned_cols=61 Identities=28% Similarity=0.491 Sum_probs=30.5
Q ss_pred HhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 001254 506 VETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574 (1113)
Q Consensus 506 kEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEs 574 (1113)
.|-|-||-+..+++.|-+.|--.-++ +..-|+--++.+-.=-+.|+.|.+ -+..++++|..
T Consensus 121 vefE~~Khei~rl~Ee~~~l~~qlee-------~~rLk~iae~qleEALesl~~ERe-qk~~LrkEL~~ 181 (717)
T PF09730_consen 121 VEFEGLKHEIKRLEEEIELLNSQLEE-------AARLKEIAEKQLEEALESLKSERE-QKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45555555555555555554433333 333333334444444455665554 24556666666
No 198
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=20.63 E-value=1.2e+03 Score=26.06 Aligned_cols=161 Identities=17% Similarity=0.186 Sum_probs=93.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhh-hhhhhhHH
Q 001254 77 LASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVA-ADSKFAEA 155 (1113)
Q Consensus 77 wtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~t-sesKLaEA 155 (1113)
|.-|.++|++||..-+.+. +|||. .|+.--+.||+-|..||.--.+...+ +.+.--.|
T Consensus 1 Yvekv~~LQ~AL~~LQaa~--------------ekRE~-------lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~ 59 (205)
T PF12240_consen 1 YVEKVERLQQALAQLQAAC--------------EKREQ-------LERRLRTRLERELESLRAQQRQGNSSGSSSPSNNA 59 (205)
T ss_pred ChhHHHHHHHHHHHHHHHH--------------HHHHH-------HHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcH
Confidence 3567899999998876543 55654 46666788999999999876664421 12211335
Q ss_pred HHHHHHHhhhhHHHHHhhhhhhHHHHHHhcch-hHHhhhhHHHhhhh-hHHHHHH-hHhhhhhhhHHHHHHHHHhchHHH
Q 001254 156 RCMVENAQKKFAEAEAKLHAAESLQAEANRYH-RSAERKLQEVVARE-DDLSRRI-ASFKADCEEKEREIIRERQSLSDR 232 (1113)
Q Consensus 156 ~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~-s~aeRKL~eVEaRE-~~LrRer-lSf~~E~ea~E~~~~~qRe~L~ew 232 (1113)
..|.. .+-|-|.++.+.++-.+.-..++ -+.-+.==-++|=. ..-.|.. +.-.+.++.+...| +.-+++---
T Consensus 60 ~~L~~----~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~-r~~eel~~a 134 (205)
T PF12240_consen 60 SNLKE----LLREKEERILALEADMTKWEQKYLEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSL-REEEELHMA 134 (205)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccc-cchHHHHHh
Confidence 55544 45556788888777766655443 11111111111111 1122333 33446666664444 444666666
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHH
Q 001254 233 KKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKE 270 (1113)
Q Consensus 233 eKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEke 270 (1113)
.++.++++.||-..- -.|.|.|..++.++..
T Consensus 135 ~~K~qemE~RIK~Lh-------aqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 135 NRKCQEMENRIKALH-------AQIAEKDAMIKVLQQR 165 (205)
T ss_pred hhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence 777888888865554 3456666666666553
No 199
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=20.40 E-value=3.4e+02 Score=25.19 Aligned_cols=53 Identities=9% Similarity=0.275 Sum_probs=45.2
Q ss_pred HHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 001254 124 KECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAA 176 (1113)
Q Consensus 124 KqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aA 176 (1113)
+.++..+.+.+..|+.+...+.--...-+..++.+.++++.|...+..=..++
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v 77 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAV 77 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 67889999999999999999998888899999999999888887776555444
No 200
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=20.07 E-value=1.2e+03 Score=25.88 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001254 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1113)
Q Consensus 489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 521 (1113)
.|..+++.+|+ +|..|......+...|+.|
T Consensus 135 ~l~~e~erL~a---eL~~er~~~e~q~~~Fe~E 164 (202)
T PF06818_consen 135 SLRREVERLRA---ELQRERQRREEQRSSFEQE 164 (202)
T ss_pred hHHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Confidence 35555666554 3455555555666677765
Done!