Query 001254
Match_columns 1113
No_of_seqs 42 out of 44
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 18:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 97.9 2.1E-05 7.2E-10 97.0 10.2 42 682-723 1120-1161(1184)
2 1i84_S Smooth muscle myosin he 97.8 5E-05 1.7E-09 93.7 10.0 33 556-589 1148-1180(1184)
3 3na7_A HP0958; flagellar bioge 94.8 2.6 9E-05 44.0 20.5 90 492-599 97-186 (256)
4 3vkg_A Dynein heavy chain, cyt 94.4 6.2 0.00021 54.5 27.2 30 208-238 1665-1694(3245)
5 2dfs_A Myosin-5A; myosin-V, in 93.6 1.3 4.3E-05 55.3 17.3 92 488-603 987-1078(1080)
6 3na7_A HP0958; flagellar bioge 92.9 10 0.00036 39.5 22.4 122 399-522 6-134 (256)
7 3vkg_A Dynein heavy chain, cyt 92.1 18 0.00063 50.1 26.2 24 548-571 2080-2103(3245)
8 2dfs_A Myosin-5A; myosin-V, in 91.4 6.8 0.00023 49.0 19.6 25 489-513 1020-1044(1080)
9 3oja_B Anopheles plasmodium-re 88.2 9.2 0.00031 43.1 16.0 70 443-515 463-532 (597)
10 3oja_B Anopheles plasmodium-re 87.5 3.6 0.00012 46.4 12.2 18 489-506 562-579 (597)
11 2efr_A General control protein 83.9 38 0.0013 34.1 19.0 135 128-301 3-137 (155)
12 3oja_A Leucine-rich immune mol 78.5 38 0.0013 37.5 15.5 63 483-545 419-481 (487)
13 2ocy_A RAB guanine nucleotide 75.5 65 0.0022 32.5 14.6 130 50-211 12-141 (154)
14 3oja_A Leucine-rich immune mol 70.9 72 0.0025 35.3 15.2 52 655-706 433-484 (487)
15 2eqb_B RAB guanine nucleotide 69.8 58 0.002 30.8 11.9 92 77-182 3-94 (97)
16 3q8t_A Beclin-1; autophagy, AT 68.4 32 0.0011 31.9 9.9 63 659-721 6-68 (96)
17 2v71_A Nuclear distribution pr 66.0 1.3E+02 0.0044 31.2 16.5 70 435-515 104-177 (189)
18 2b9c_A Striated-muscle alpha t 63.0 23 0.00078 35.1 8.3 41 162-202 8-48 (147)
19 2fxo_A Myosin heavy chain, car 62.6 1.1E+02 0.0038 29.2 15.6 40 488-527 79-118 (129)
20 2v71_A Nuclear distribution pr 61.9 1.5E+02 0.0053 30.7 16.4 112 189-310 46-157 (189)
21 3mq9_A Bone marrow stromal ant 61.4 51 0.0017 36.4 11.6 96 129-225 370-469 (471)
22 3hnw_A Uncharacterized protein 54.4 71 0.0024 31.3 10.0 59 489-547 72-130 (138)
23 2e7s_A RAB guanine nucleotide 51.1 27 0.00094 34.6 6.5 75 116-207 51-125 (135)
24 3ghg_A Fibrinogen alpha chain; 44.6 1.8E+02 0.0063 34.4 12.8 135 334-492 50-187 (562)
25 3tnu_B Keratin, type II cytosk 38.8 2.6E+02 0.0087 26.6 11.0 116 232-367 13-129 (129)
26 1x8y_A Lamin A/C; structural p 32.5 2.8E+02 0.0096 25.0 9.7 80 279-367 2-82 (86)
27 3teq_A Stromal interaction mol 31.5 44 0.0015 31.8 4.3 44 144-187 22-80 (101)
28 3i00_A HIP-I, huntingtin-inter 31.4 2.2E+02 0.0074 27.6 9.2 64 444-517 16-79 (120)
29 3o0z_A RHO-associated protein 30.3 4.6E+02 0.016 26.9 16.2 111 427-537 11-135 (168)
30 4erc_A Dual specificity protei 28.8 29 0.001 31.7 2.6 35 1-36 1-36 (150)
31 3q8t_A Beclin-1; autophagy, AT 28.6 3.5E+02 0.012 25.0 12.4 39 503-541 15-53 (96)
32 3u1c_A Tropomyosin alpha-1 cha 26.6 2.2E+02 0.0074 26.4 8.0 71 138-208 24-95 (101)
33 1m1j_B Fibrinogen beta chain; 25.4 5.1E+02 0.017 30.1 12.4 26 250-275 130-155 (464)
34 2jee_A YIIU; FTSZ, septum, coi 24.9 3.8E+02 0.013 24.7 9.0 56 464-519 13-68 (81)
35 3o0z_A RHO-associated protein 24.2 5.9E+02 0.02 26.1 15.5 64 180-243 36-99 (168)
36 3hnw_A Uncharacterized protein 23.6 3.7E+02 0.013 26.3 9.4 11 408-418 35-45 (138)
37 1f5n_A Interferon-induced guan 23.5 8E+02 0.028 29.0 13.8 121 398-521 456-582 (592)
38 3nmd_A CGMP dependent protein 22.4 1.8E+02 0.0062 26.3 6.3 47 283-329 19-65 (72)
39 1xri_A AT1G05000; structural g 20.1 51 0.0017 30.5 2.5 34 1-36 1-34 (151)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.91 E-value=2.1e-05 Score=96.96 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001254 682 RRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESE 723 (1113)
Q Consensus 682 ~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vE 723 (1113)
.++.+..++...+++......++..++..+..+...+...++
T Consensus 1120 ~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ie 1161 (1184)
T 1i84_S 1120 ELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161 (1184)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444444444443333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.76 E-value=5e-05 Score=93.72 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhh
Q 001254 556 SLRQERDAMRDQHKRDVDSLNREREEFMNKMVHE 589 (1113)
Q Consensus 556 rLK~EK~~~r~~~krelEsL~~ekEsF~~kMehE 589 (1113)
.|..+...++..+.. +...+...-+...+|+.|
T Consensus 1148 ~L~~ele~L~~~Iee-l~~vn~aq~el~~~~e~~ 1180 (1184)
T 1i84_S 1148 DLSEELEALKTELED-TLDTTATQQELRGSDYKD 1180 (1184)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHHHHhhhccc
Confidence 444444444444432 333344444444444433
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.85 E-value=2.6 Score=44.03 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001254 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 571 (1113)
Q Consensus 492 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~kre 571 (1113)
.||+........|..+.-++-...+..+.+++.+....+.++.+ .+.++.+.++.-..+..+
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~------------------l~~~~~~~~~~~~e~~~e 158 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL------------------ALELESLVENEVKNIKET 158 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444444444444333333 334445555566667777
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHH
Q 001254 572 VDSLNREREEFMNKMVHEHSEWFTKIQQ 599 (1113)
Q Consensus 572 lEsL~~ekEsF~~kMehErs~~~eKiq~ 599 (1113)
+..|.-.|+.|...|...=...+++|..
T Consensus 159 ~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 159 QQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888888888888666666666643
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.40 E-value=6.2 Score=54.49 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=15.0
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHHHH
Q 001254 208 IASFKADCEEKEREIIRERQSLSDRKKILQQ 238 (1113)
Q Consensus 208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe 238 (1113)
..+|.+.++.+.=++.+- =++.+|..-|+.
T Consensus 1665 LAa~i~~~~vfqi~i~k~-Y~~~~f~eDLk~ 1694 (3245)
T 3vkg_A 1665 FVAWMNGLSIYTIKVNNN-YKSSDFDDDLRM 1694 (3245)
T ss_dssp HHHHHTTCEEECCC-----CCHHHHHHHHHH
T ss_pred HHHHHhCCeeEEEeeeCC-CCHHHHHHHHHH
Confidence 456777776665554432 235566555543
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.56 E-value=1.3 Score=55.35 Aligned_cols=92 Identities=17% Similarity=0.314 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001254 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 567 (1113)
Q Consensus 488 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~ 567 (1113)
..|.+||+..|.+-..+.+|-+.|++....... .|.+|-..|++ |-..|++..+++...
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~------------------e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKE------------------QNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Confidence 344555555555555555555555444333331 22233333333 444555555555554
Q ss_pred HHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 001254 568 HKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD 603 (1113)
Q Consensus 568 ~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad 603 (1113)
+...-+.+. +.+-..|++++..+..-...||+.
T Consensus 1046 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1080)
T 2dfs_A 1046 IHDQAKEIT---ETMEKKLVEETKQLELDLNDERLR 1078 (1080)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444333 566777777777777766666664
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.85 E-value=10 Score=39.55 Aligned_cols=122 Identities=18% Similarity=0.177 Sum_probs=54.7
Q ss_pred hHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001254 399 QSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQ----KEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (1113)
Q Consensus 399 k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~----~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk 474 (1113)
+++.|-+.. .++.++..|...-+.|.++=..++.+...+. +-+..+..++.++-+....+..-..+|..-+.+|.
T Consensus 6 ~L~~L~~LQ-~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 6 HLKQLIEIS-HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 3455555555555555444444433333333 33333334444444444444444444444444443
Q ss_pred hhhhhhhhHHHHHHH---HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001254 475 AMKSEAGELSVLEIK---LKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 522 (1113)
Q Consensus 475 iteeER~E~lrLQse---LKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 522 (1113)
... ---||..|+-+ ++.+|..+.....++|...+.++......+...
T Consensus 85 ~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 85 EIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 12234444433 345555555555555555555554444444333
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.14 E-value=18 Score=50.12 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=14.4
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHhh
Q 001254 548 KSLKDERDSLRQERDAMRDQHKRD 571 (1113)
Q Consensus 548 k~~~~E~erLK~EK~~~r~~~kre 571 (1113)
.-+.+|..|=...-..+..++..=
T Consensus 2080 ~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2080 DNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccccHHHHHHHHHHHHHhc
Confidence 335567777666666666655543
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.36 E-value=6.8 Score=49.02 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHH
Q 001254 489 KLKEELDVVRAQKLELMVETDKLQL 513 (1113)
Q Consensus 489 eLKeEId~~R~Qke~LlkEae~Lk~ 513 (1113)
.|.+.|..+..+...|....|+|..
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.23 E-value=9.2 Score=43.12 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 001254 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK 515 (1113)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eK 515 (1113)
.++..++.++....+.+.....+|....+.+.+.+++..+ ....|++++.+.+.....+..+...++++.
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLAR---SSDNLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCC---HHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 4555555555555556666666666666666555443332 234556666655555555544444444443
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.50 E-value=3.6 Score=46.37 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 001254 489 KLKEELDVVRAQKLELMV 506 (1113)
Q Consensus 489 eLKeEId~~R~Qke~Llk 506 (1113)
+|++|+...+.+...|+.
T Consensus 562 ~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 562 ELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 11
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=83.89 E-value=38 Score=34.08 Aligned_cols=135 Identities=15% Similarity=0.147 Sum_probs=74.0
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHH
Q 001254 128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR 207 (1113)
Q Consensus 128 adLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRe 207 (1113)
..||.-|++. ++-|. .|..++.. ++.-+..+|.++.+|+++..+.---...+...|+.+++++..-...
T Consensus 3 ~~lE~qlkea-ae~ad------~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqr 71 (155)
T 2efr_A 3 KQLEDKVEEL-LSKNY------HLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQK 71 (155)
T ss_dssp HHHHHHHHHH-HHHHH------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHhH------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 4577777777 45444 44456555 6666667788888888877666655566666666666655432211
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhh
Q 001254 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 287 (1113)
Q Consensus 208 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ 287 (1113)
.+.|+.+ +....-+|.+.+.|.- .-.+.+..+++.++.+.-.+.......+.
T Consensus 72 -------Ed~yEeq-------Ik~L~~kLKEAE~RAE--------------~AERsv~kLEk~id~lEd~L~~~Kek~~~ 123 (155)
T 2efr_A 72 -------EDKYEEE-------IKVLSDKLKEAETRAE--------------FAERSVTKLEKSIDDLEDELYAQKLKYKA 123 (155)
T ss_dssp -------HHHHHHH-------HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHH-------HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222 2223334444444443 44444555555555555555555555555
Q ss_pred hhhhhhHhHHHhhh
Q 001254 288 EKSNLDLTLVSLLK 301 (1113)
Q Consensus 288 ke~dl~~rl~~l~~ 301 (1113)
-...|...+..|+.
T Consensus 124 i~~eLd~tl~el~~ 137 (155)
T 2efr_A 124 ISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 55555566665554
No 12
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.47 E-value=38 Score=37.52 Aligned_cols=63 Identities=8% Similarity=-0.039 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 001254 483 LSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVV 545 (1113)
Q Consensus 483 ~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~ 545 (1113)
+..+.+++-.|++..++.......+.+.|++++++-+++-+.+|..-++..-...+...++..
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
T 3oja_A 419 YEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQN 481 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHH
Confidence 333444555555555555555666666666666666666666666655555555555544433
No 13
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.48 E-value=65 Score=32.52 Aligned_cols=130 Identities=18% Similarity=0.260 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHh
Q 001254 50 IAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIAS 129 (1113)
Q Consensus 50 ia~IskLE~ElydYQyNMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVad 129 (1113)
|.+.+.||-+|..-.++.... +.=.+.|+.++.-+.... +-++.+..--.-|..+|.-|+.--..
T Consensus 12 in~qs~LeD~L~~~R~el~~~----~~ri~~lE~~r~~~~~l~-----------~~~~~~~~e~~~L~~~l~~E~~~R~~ 76 (154)
T 2ocy_A 12 VDKQSHLEEQLNKSLKTIASQ----KAAIENYNQLKEDYNTLK-----------RELSDRDDEVKRLREDIAKENELRTK 76 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHTTHHHHHHHHHHH-----------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-----------HHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 566677777776655554322 222233333333332211 12233333334456666666666666
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHh
Q 001254 130 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIA 209 (1113)
Q Consensus 130 LEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRerl 209 (1113)
.|+.+..|..|.-+. +-|=|.+||.||+.+...-. .+-++...+...|.+.+.+-+.|+.+.-
T Consensus 77 aE~~~~~ie~ElEeL---TasLFeEAN~MVa~ar~~~~--------------~~e~r~~~L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 77 AEEEADKLNKEVEDL---TASLFDEANNMVADARKEKY--------------AIEILNKRLTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777763 33568999999987644433 3444555566666666666666655544
Q ss_pred Hh
Q 001254 210 SF 211 (1113)
Q Consensus 210 Sf 211 (1113)
.+
T Consensus 140 ~L 141 (154)
T 2ocy_A 140 NL 141 (154)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 14
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.85 E-value=72 Score=35.34 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 001254 655 AEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEE 706 (1113)
Q Consensus 655 a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~ 706 (1113)
+.+.|+.++.+..+|..|...+...-..++.+.++++...-.+.++...|-.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHH
Confidence 4444455555555554444444444445556666666666666655555543
No 15
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.82 E-value=58 Score=30.83 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=60.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHH
Q 001254 77 LASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEAR 156 (1113)
Q Consensus 77 wtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~ 156 (1113)
+.+.|+.++..+...+.-++. ++.--.-|...|.-|+.--...|..+..|..|.-+. +-|=|.+||
T Consensus 3 ~~~~~e~lre~l~~le~~~~~-----------~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL---TasLFeEAN 68 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSD-----------RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL---TASLFDEAN 68 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 345566666666666533322 444444466666666666667788888888877773 335689999
Q ss_pred HHHHHHhhhhHHHHHhhhhhhHHHHH
Q 001254 157 CMVENAQKKFAEAEAKLHAAESLQAE 182 (1113)
Q Consensus 157 aLv~~~eeKslEvE~KL~aAeak~AE 182 (1113)
.||+.+......+|.|...-.+-+++
T Consensus 69 ~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 69 NMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999977777777776665555544
No 16
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=68.41 E-value=32 Score=31.87 Aligned_cols=63 Identities=16% Similarity=0.320 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001254 659 LEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAE 721 (1113)
Q Consensus 659 ~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~ 721 (1113)
++.+..++..|..|-..+...-+.++.+.+.+...|..|...+..|..+-+.|.++++.|..+
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q 68 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345556666667777777777777888888888899999999999999999999999888543
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=66.00 E-value=1.3e+02 Score=31.24 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHH
Q 001254 435 KSLLQKEKEEVNIIKSDLQKS----LSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDK 510 (1113)
Q Consensus 435 k~~L~~eKEel~~lK~dlEK~----~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~ 510 (1113)
+..|....-+|....+|+|.. -+++++-..+.+.+.|+...++ ++|.+ =+.++..-.-|.-|+-+
T Consensus 104 ~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE----------~El~E-Ke~l~~~~QRLkdE~rD 172 (189)
T 2v71_A 104 KEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLE----------SELDE-KESLLVSVQRLKDEARD 172 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHHCCC---------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHHHHHHHHHHHHHH
Confidence 333344444444444444432 3445555556666666666655 44442 33333333445555555
Q ss_pred HHHHH
Q 001254 511 LQLEK 515 (1113)
Q Consensus 511 Lk~eK 515 (1113)
|+++-
T Consensus 173 Lk~El 177 (189)
T 2v71_A 173 LRQEL 177 (189)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55543
No 18
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=63.03 E-value=23 Score=35.15 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=26.4
Q ss_pred HhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh
Q 001254 162 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED 202 (1113)
Q Consensus 162 ~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~ 202 (1113)
+++.+.-++..|..|-.++.+|.-...+.+|..+-++.|..
T Consensus 8 lEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~ 48 (147)
T 2b9c_A 8 VEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 48 (147)
T ss_dssp ---CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34445556667777777777777777777777776766654
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=62.57 E-value=1.1e+02 Score=29.25 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 001254 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 527 (1113)
Q Consensus 488 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDE 527 (1113)
.+|-..|..+-.+.+........|...|.+++.++..|-.
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555555555555555554433
No 20
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=61.91 E-value=1.5e+02 Score=30.70 Aligned_cols=112 Identities=16% Similarity=0.224 Sum_probs=48.7
Q ss_pred HHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhH
Q 001254 189 SAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKE 268 (1113)
Q Consensus 189 ~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kE 268 (1113)
+++..|..++.|...|+.....+..|++....-+.... +++-+.....+..+...+ .--..+...-+.|.+..
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~---~e~~~~~~~Lq~el~~l~----~~~~~l~~~ireLEq~N 118 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY---AQSYKQVSVLEDDLSQTR----AIKEQLHKYVRELEQAN 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555544443322 222222222222222222 11122223333444444
Q ss_pred HHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHH
Q 001254 269 KELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIERE 310 (1113)
Q Consensus 269 keLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEee~~~~~ 310 (1113)
-+||.+...+ ..+|.+-+..++.-|...+.=|-+++.+.
T Consensus 119 DdlEr~~R~~---~~SleD~e~kln~aiEr~alLE~El~EKe 157 (189)
T 2v71_A 119 DDLERAKRAT---IMSLEDFEQRLNQAIERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443332 33344445555555555555555555533
No 21
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=61.41 E-value=51 Score=36.41 Aligned_cols=96 Identities=17% Similarity=0.221 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhh----HHHhhhhhHH
Q 001254 129 SLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKL----QEVVAREDDL 204 (1113)
Q Consensus 129 dLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL----~eVEaRE~~L 204 (1113)
+.+.||.++......+ +..-.+-++|.....-+++++.++...+..+++..+-|||.--.+.-.| -.-++|-..|
T Consensus 370 t~eeal~~~~~~i~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (471)
T 3mq9_A 370 TVDEALKDAQTRITAA-RDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEEL 448 (471)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666655554443 2333455688888999999999999999999999999999754433333 2223333333
Q ss_pred HHHHhHhhhhhhhHHHHHHHH
Q 001254 205 SRRIASFKADCEEKEREIIRE 225 (1113)
Q Consensus 205 rRerlSf~~E~ea~E~~~~~q 225 (1113)
.-++..++.+.+..++++..+
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 449 EGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444433
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.41 E-value=71 Score=31.33 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001254 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 547 (1113)
Q Consensus 489 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~le 547 (1113)
+++++++.++.+...+.+|..+||.+....-..-+.+...-++|+++......+-..++
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777766666655555555555555555555544444443
No 23
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.13 E-value=27 Score=34.60 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=42.7
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001254 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 195 (1113)
Q Consensus 116 LkKALgvEKqCVadLEKAL~emr~E~AeiK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~ 195 (1113)
|..+|.-|+.--...|.....|..|.-+. +-|=|.+||.||+.+......+| ++...+.+.|.
T Consensus 51 L~~~l~eE~~~R~~aE~~~~~ie~ElE~L---TasLFeEAN~MVa~ar~~~~~~e--------------~r~~~L~~ql~ 113 (135)
T 2e7s_A 51 LREDIAKENELRTKAEEEADKLNKEVEDL---TASLFDEANNLVADARMEKYAIE--------------ILNKRLTEQLR 113 (135)
T ss_dssp HHHHHHHTTSHHHHHHHTTHHHHHHHHHH---HHHHHHHHHHHHHHTTHHHHHHH--------------HHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Confidence 55555555555555666666676666663 23568999999988755444444 44555555566
Q ss_pred HHhhhhhHHHHH
Q 001254 196 EVVAREDDLSRR 207 (1113)
Q Consensus 196 eVEaRE~~LrRe 207 (1113)
+.+++-+.|+.+
T Consensus 114 e~e~ll~~lq~Q 125 (135)
T 2e7s_A 114 EKDMLLDTLTLQ 125 (135)
T ss_dssp HHHHCC------
T ss_pred HHHHHHHHHHHH
Confidence 665555555444
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.61 E-value=1.8e+02 Score=34.41 Aligned_cols=135 Identities=12% Similarity=0.083 Sum_probs=73.7
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHH---HHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhH
Q 001254 334 EIQKIIANHESALRVKQSEFEAEL---AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDL 410 (1113)
Q Consensus 334 EIQKLldeh~a~L~~Kk~EFElEl---E~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl 410 (1113)
+||-||+.|+--|..+..++=.++ .+.+++.+.=+..+...|..+-......+..+.+--.+|+.+...|+++
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKek---- 125 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRK---- 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHH----
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH----
Confidence 689999999988887777665544 4456666666777777776666655555555555555555554444432
Q ss_pred HHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 001254 411 VERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKL 490 (1113)
Q Consensus 411 ~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseL 490 (1113)
|..+..+|..=+-.|..+-.+|+++-+.|..|.+--.--+.+-=.-+=+...|.-+|-+|
T Consensus 126 --------------------VdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQL 185 (562)
T 3ghg_A 126 --------------------VIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQL 185 (562)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHH
Confidence 222222222222333334444445555555555444433444334444555565555555
Q ss_pred HH
Q 001254 491 KE 492 (1113)
Q Consensus 491 Ke 492 (1113)
.|
T Consensus 186 eQ 187 (562)
T 3ghg_A 186 EQ 187 (562)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 25
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.80 E-value=2.6e+02 Score=26.62 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHhhhh-HHHHHHHH
Q 001254 232 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKR-EEAVIERE 310 (1113)
Q Consensus 232 weKkLqe~eeRL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~r-Eee~~~~~ 310 (1113)
|..++.+........-.-|..=..-+.+.-+.+..++-+|+ .|+.....|...+++.-.+ +.++....
T Consensus 13 y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~-----------~l~~~~~~LE~~l~e~e~~~~~~l~~~q 81 (129)
T 3tnu_B 13 YQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEID-----------NVKKQCANLQNAIADAEQRGELALKDAR 81 (129)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHH
Q 001254 311 ASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 367 (1113)
Q Consensus 311 ~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeE 367 (1113)
..+...|.+|..+ +.+++..+.++..-|+.|.. ++.|+..-||.++-|
T Consensus 82 ~~i~~lE~eL~~~--------r~e~~~ql~EYq~LlnvKl~-Ld~EIatYRkLLEgE 129 (129)
T 3tnu_B 82 NKLAELEEALQKA--------KQDMARLLREYQELMNTKLA-LDVEIATYRKLLEGE 129 (129)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTCC-
T ss_pred HHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHCcC
No 26
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=32.49 E-value=2.8e+02 Score=25.01 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhHhHHHhhhh-HHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHH
Q 001254 279 EEKFKALNEEKSNLDLTLVSLLKR-EEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAEL 357 (1113)
Q Consensus 279 e~~~~~Lk~ke~dl~~rl~~l~~r-Eee~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElEl 357 (1113)
..+...|+...+.+..+++++-.+ +.++......+...|.+|..+ +.+++..+.++..-|+.|.. +|+|+
T Consensus 2 ~~eie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~--------r~e~~~ql~EYq~LlnvK~~-Le~EI 72 (86)
T 1x8y_A 2 SCQLSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEM--------RARMQQQLDEYQELLDIKLA-LDMEI 72 (86)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHh-hHHHH
Q ss_pred HHHhhhHHHH
Q 001254 358 AIKYKLAEDE 367 (1113)
Q Consensus 358 E~krKs~eeE 367 (1113)
..-||.++-|
T Consensus 73 atYRkLLEGE 82 (86)
T 1x8y_A 73 HAYRKLLEGE 82 (86)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHcCC
No 27
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=31.49 E-value=44 Score=31.80 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=34.2
Q ss_pred hhhhhhhhhhHHHHHHHHHhhh---------------hHHHHHhhhhhhHHHHHHhcch
Q 001254 144 TKVAADSKFAEARCMVENAQKK---------------FAEAEAKLHAAESLQAEANRYH 187 (1113)
Q Consensus 144 iK~tsesKLaEA~aLv~~~eeK---------------slEvE~KL~aAeak~AEa~Rk~ 187 (1113)
-|.+|+.+|..|..-++.+.+| +.+||.++++|...+.++.+-.
T Consensus 22 kk~~aekql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD~~Il~Ak~aL~evt~~l 80 (101)
T 3teq_A 22 KKQNAEKQLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEATAAL 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTTCHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999998 3467777777777777776543
No 28
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.44 E-value=2.2e+02 Score=27.58 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q 001254 444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAK 517 (1113)
Q Consensus 444 el~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKek 517 (1113)
.|..|+.+|+.++..++.=+.........|+-- . +.|.-|++..|+++...+.|.+.|+.+.+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~------i----~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGH------V----SELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666554433333333333221 1 456677788888888888888888876653
No 29
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=30.34 E-value=4.6e+02 Score=26.87 Aligned_cols=111 Identities=21% Similarity=0.256 Sum_probs=54.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHH
Q 001254 427 FEKEADLKKSLLQKEKEEVNIIK---SDLQKSLSSLDEKKKQVNCAKDKLEAMKSE-AGELSVLEIKLKEELDVVRAQKL 502 (1113)
Q Consensus 427 eEK~le~ek~~L~~eKEel~~lK---~dlEK~~a~~e~q~~qi~ee~E~LkiteeE-R~E~lrLQseLKeEId~~R~Qke 502 (1113)
.+|.|..=...|..+-+....+| .++.+..+.++.....+..-.-.|...+.. -.++..||+.|-+|-..++...+
T Consensus 11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455544433333 334443333333333322222222222221 13677888888888766655444
Q ss_pred ----------HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001254 503 ----------ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAE 537 (1113)
Q Consensus 503 ----------~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~ 537 (1113)
.|..|++.++.--.+-+.|--.|-||-..|+||-.
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666656666665566666555555543
No 30
>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A
Probab=28.78 E-value=29 Score=31.74 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=29.5
Q ss_pred CCCCCCCcccccCCCccccCCCC-cHHHHHHHHHccC
Q 001254 1 MASPSSGRLAITPSSRVLQSPLS-DESIWKRLKEAGL 36 (1113)
Q Consensus 1 ~~~p~~~~l~~~~g~rvl~~~~~-d~~iWkr~~eaG~ 36 (1113)
|+.||.+--.|+||. +.+++.. ..+++..|+..|+
T Consensus 1 m~~pp~~~~~i~~~~-l~~~~~p~~~~~~~~L~~~gi 36 (150)
T 4erc_A 1 MGVQPPNFSWVLPGR-LAGLALPRLPAHYQFLLDLGV 36 (150)
T ss_dssp CCCCCTTCEEEETTT-EEEESCCCSHHHHHHHHHTTE
T ss_pred CCCCCCCCEEeccCc-eeeecCCCCHHHHHHHHHCCC
Confidence 889999888899984 6667776 7888999999995
No 31
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.63 E-value=3.5e+02 Score=24.95 Aligned_cols=39 Identities=31% Similarity=0.450 Sum_probs=20.0
Q ss_pred HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 001254 503 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV 541 (1113)
Q Consensus 503 ~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~e 541 (1113)
.|..|-..|-++...-|+|.+.||.=.+.++.|+.....
T Consensus 15 ~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 15 ELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 344444444455555555555555555555555555443
No 32
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.60 E-value=2.2e+02 Score=26.39 Aligned_cols=71 Identities=21% Similarity=0.173 Sum_probs=0.0
Q ss_pred Hhhhhhhh-hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHH
Q 001254 138 RAESAETK-VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRI 208 (1113)
Q Consensus 138 r~E~AeiK-~tsesKLaEA~aLv~~~eeKslEvE~KL~aAeak~AEa~Rk~s~aeRKL~eVEaRE~~LrRer 208 (1113)
|++.++.+ -.++.....+-.=|.+++.|..-+|.-|-.+...+.+++.+..+.+....+.|+--.+|.|.+
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 33
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=25.43 E-value=5.1e+02 Score=30.12 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=10.8
Q ss_pred hhhhhHhhHhhHHHHhHhHHHHHHHh
Q 001254 250 LNEREDHILSKLQELSRKEKELEASR 275 (1113)
Q Consensus 250 LNqREe~~~e~~~~l~~kEkeLEe~k 275 (1113)
+++++..+.++...++.....||..+
T Consensus 130 lk~~Q~Qi~en~n~~~~~~~~~e~~~ 155 (464)
T 1m1j_B 130 LVKTQKQRKDNDIILSEYNTEMELHY 155 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHHHH
Confidence 44444444444444444444444333
No 34
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.90 E-value=3.8e+02 Score=24.71 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=31.3
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 001254 464 KQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 519 (1113)
Q Consensus 464 ~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE 519 (1113)
.+|..+-+....++-|=.|+-.--..|.++.+..|.....|..|...|+++...|.
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444455556666666666666666666666665543
No 35
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=24.24 E-value=5.9e+02 Score=26.09 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=48.9
Q ss_pred HHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHH
Q 001254 180 QAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERL 243 (1113)
Q Consensus 180 ~AEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eeRL 243 (1113)
.||+.-..+.++....|+..+-..|+..+.++..|+-..-..+.-+|.+.+-..-...+.+.|+
T Consensus 36 ~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri 99 (168)
T 3o0z_A 36 HTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARI 99 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888999999999999999999999988888888888887766554444444444443
No 36
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.65 E-value=3.7e+02 Score=26.29 Aligned_cols=11 Identities=0% Similarity=-0.013 Sum_probs=5.1
Q ss_pred hhHHHHhhhhH
Q 001254 408 KDLVERSHLLE 418 (1113)
Q Consensus 408 kdl~~Ksk~LK 418 (1113)
..++.|...++
T Consensus 35 ~~vd~km~ei~ 45 (138)
T 3hnw_A 35 SYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 37
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=23.47 E-value=8e+02 Score=28.96 Aligned_cols=121 Identities=14% Similarity=0.215 Sum_probs=0.0
Q ss_pred HhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh-h
Q 001254 398 VQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA-M 476 (1113)
Q Consensus 398 ~k~~~lkEKEkdl~~Ksk~LKEkEksLkaeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lki-t 476 (1113)
++.+-|.+-=+..+....++-.-+++|...+|.++.+...-.+-..+...|..-..+.-.-+++|.+...+-..+|.. |
T Consensus 456 ~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~km 535 (592)
T 1f5n_A 456 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 535 (592)
T ss_dssp THHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHH-----HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 001254 477 KSEAGELSV-----LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (1113)
Q Consensus 477 eeER~E~lr-----LQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 521 (1113)
+.||.-+++ |..+||++=+.++.. ...+++.|+.|...+...
T Consensus 536 e~~~~~~~~e~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 536 ENDRVQLLKEQERTLALKLQEQEQLLKEG---FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
No 38
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.44 E-value=1.8e+02 Score=26.27 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=38.4
Q ss_pred HHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001254 283 KALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 329 (1113)
Q Consensus 283 ~~Lk~ke~dl~~rl~~l~~rEee~~~~~~~Le~KEkELl~leEKL~a 329 (1113)
.++.+-+..|..+...|..++.-+..++..|..|+.++..|+-.|..
T Consensus 19 gti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 19 GSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888889999999999999999999999888877654
No 39
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=20.14 E-value=51 Score=30.52 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=28.4
Q ss_pred CCCCCCCcccccCCCccccCCCCcHHHHHHHHHccC
Q 001254 1 MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGL 36 (1113)
Q Consensus 1 ~~~p~~~~l~~~~g~rvl~~~~~d~~iWkr~~eaG~ 36 (1113)
|-.||.+--.|+|| +.|++..+..+|..|+..|+
T Consensus 1 ~~~pp~n~~~v~~~--l~~s~~~~~~d~~~L~~~gi 34 (151)
T 1xri_A 1 HLIPPLNFSMVDNG--IFRSGFPDSANFSFLQTLGL 34 (151)
T ss_dssp CBCCCTTCEEEETT--EEEESCCCHHHHHHHHHHTC
T ss_pred CccCCcCcCeeCCC--eEECCCcCccCHHHHHHCCC
Confidence 44577766679998 88999999999999999996
Done!