Query 001254
Match_columns 1113
No_of_seqs 42 out of 44
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 18:46:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001254.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001254hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cosa1 a.5.2.1 (A:8-48) Serin 36.7 16 0.0012 27.7 3.8 32 25-56 3-41 (41)
2 d1xria_ c.45.1.1 (A:) Putative 33.9 8.5 0.00062 34.2 2.2 33 1-36 2-34 (151)
3 d1zu2a1 a.118.8.1 (A:1-145) Mi 19.8 58 0.0042 28.1 5.0 45 51-95 65-109 (145)
4 d1qvra2 c.37.1.20 (A:149-535) 15.2 2E+02 0.014 29.5 8.7 21 484-504 312-332 (387)
5 d1k4ta1 a.2.8.1 (A:641-712) Eu 12.8 3.6E+02 0.026 22.4 7.9 53 421-473 1-58 (72)
6 d1aopa2 d.58.36.1 (A:346-425) 9.4 29 0.0021 29.0 -0.2 31 7-37 43-76 (80)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 8.8 2.1E+02 0.015 23.3 5.1 43 686-728 43-88 (88)
8 d2fa8a1 c.47.1.23 (A:4-89) Hyp 8.0 12 0.00089 32.3 -3.2 43 6-48 34-78 (86)
9 d1bjta_ e.11.1.1 (A:) DNA topo 7.9 2.2E+02 0.016 31.9 6.3 43 491-533 708-759 (760)
10 d1qvra2 c.37.1.20 (A:149-535) 7.3 5.8E+02 0.042 25.8 9.0 59 653-711 256-329 (387)
No 1
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.71 E-value=16 Score=27.69 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=25.6
Q ss_pred HHHHHHHHHccCChHHHhh-------hcHHHHHHHHHHH
Q 001254 25 ESIWKRLKEAGLDEVSIKR-------RDKAALIAYIAKL 56 (1113)
Q Consensus 25 ~~iWkr~~eaG~De~S~~r-------rD~~aLia~IskL 56 (1113)
-.+.+-|.-||||++-.-| |.-+|.|+||||.
T Consensus 3 RQMlqdl~~aG~D~~m~iral~qt~~rsieaaie~iskm 41 (41)
T d2cosa1 3 RQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKM 41 (41)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHhcC
Confidence 3577889999999986543 7788999999984
No 2
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=33.85 E-value=8.5 Score=34.23 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=26.7
Q ss_pred CCCCCCCcccccCCCccccCCCCcHHHHHHHHHccC
Q 001254 1 MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGL 36 (1113)
Q Consensus 1 ~~~p~~~~l~~~~g~rvl~~~~~d~~iWkr~~eaG~ 36 (1113)
|.||+.++ .|.+| |.||+..+.+.|..|+..|+
T Consensus 2 ~~pp~nF~-~V~~~--lyRs~~~t~~~~~~L~~lgI 34 (151)
T d1xria_ 2 LIPPLNFS-MVDNG--IFRSGFPDSANFSFLQTLGL 34 (151)
T ss_dssp BCCCTTCE-EEETT--EEEESCCCHHHHHHHHHHTC
T ss_pred CCCCcccc-eecCC--ceecCCCCHHHHHHHHHCCC
Confidence 34565554 48887 89999999999999999996
No 3
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=19.80 E-value=58 Score=28.09 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhhhccchhheehhhhhhhHHHHHHHHHHHHHHH
Q 001254 51 AYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQ 95 (1113)
Q Consensus 51 a~IskLE~ElydYQyNMGLLLiEkKEwtSK~EeLkqa~~eae~~l 95 (1113)
.++-+|.-.-++.-||||.++.+...+..........+..|...+
T Consensus 65 ~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~ 109 (145)
T d1zu2a1 65 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF 109 (145)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhh
Confidence 455567777788889999999998887766655555555555444
No 4
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=15.25 E-value=2e+02 Score=29.50 Aligned_cols=21 Identities=19% Similarity=-0.029 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 001254 484 SVLEIKLKEELDVVRAQKLEL 504 (1113)
Q Consensus 484 lrLQseLKeEId~~R~Qke~L 504 (1113)
..-..+||++|+.+|.+.+..
T Consensus 312 l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 312 LRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334467888888888876543
No 5
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.80 E-value=3.6e+02 Score=22.40 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=39.0
Q ss_pred HhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHhhh
Q 001254 421 ENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQ-----KSLSSLDEKKKQVNCAKDKL 473 (1113)
Q Consensus 421 EksLkaeEK~le~ek~~L~~eKEel~~lK~dlE-----K~~a~~e~q~~qi~ee~E~L 473 (1113)
|+||......|+..+.+|..-+.++..++.|.- +++..++..+.++.--.++|
T Consensus 1 eKsMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL 58 (72)
T d1k4ta1 1 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQL 58 (72)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888899989999888888888888775 55556665555555444443
No 6
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=9.41 E-value=29 Score=28.97 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=22.4
Q ss_pred CcccccCCCccccCCCCcHH---HHHHHHHccCC
Q 001254 7 GRLAITPSSRVLQSPLSDES---IWKRLKEAGLD 37 (1113)
Q Consensus 7 ~~l~~~~g~rvl~~~~~d~~---iWkr~~eaG~D 37 (1113)
|.+-+||.|.++=..+++++ +|.+|+++||+
T Consensus 43 g~irlT~~Qnlil~~V~~~~~~~i~~~L~~~Gl~ 76 (80)
T d1aopa2 43 GDFRITANQNLIIAGVPESEKAKIEKIAKESGLM 76 (80)
T ss_dssp SEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTTT
T ss_pred CcEEEcCCCCeEecCCCHHHHHHHHHHHHHcCCC
Confidence 44557888876655555554 79999999983
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.79 E-value=2.1e+02 Score=23.27 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=26.2
Q ss_pred HHHHHHhhHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHhhhh
Q 001254 686 EWAELNNSIEELMVQRQ---KLEEQRQLLHADREEIQAESERLKKL 728 (1113)
Q Consensus 686 e~aEm~kdIeeL~~ls~---KLk~QRE~~~~ERe~fl~~vEklK~c 728 (1113)
-+.-+..-|+-+..|.. .|....+.+......+...+.+|.+|
T Consensus 43 K~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~gc 88 (88)
T d1nkpa_ 43 KVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555555555554444 44555566666666777777777776
No 8
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=7.98 E-value=12 Score=32.32 Aligned_cols=43 Identities=21% Similarity=0.536 Sum_probs=29.2
Q ss_pred CCcccccCCC-ccccCCCCcHHHHHHHHHccC-ChHHHhhhcHHH
Q 001254 6 SGRLAITPSS-RVLQSPLSDESIWKRLKEAGL-DEVSIKRRDKAA 48 (1113)
Q Consensus 6 ~~~l~~~~g~-rvl~~~~~d~~iWkr~~eaG~-De~S~~rrD~~a 48 (1113)
.+.++..||. ++..=-+.+.-+|.|..+-|| |...|+.+=|..
T Consensus 34 i~evsL~P~~~G~FeV~v~g~li~srk~~ggFPd~kelkq~VRd~ 78 (86)
T d2fa8a1 34 IGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDL 78 (86)
T ss_dssp CSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHH
T ss_pred CceEEEEECCCeEEEEEECCEEEEEeccCCCCCCHHHHHHHHHHh
Confidence 4556655555 333333566778999999999 888887765543
No 9
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.94 E-value=2.2e+02 Score=31.90 Aligned_cols=43 Identities=26% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHhhHHH---------HHHHHHHHHHHhhhHHHHHHHH
Q 001254 491 KEELDVVRAQKLELMVETDKL---------QLEKAKFEAEWEMIDEKREELR 533 (1113)
Q Consensus 491 KeEId~~R~Qke~LlkEae~L---------k~eKekFE~EWE~LDEKRael~ 533 (1113)
+++++++..+...|.+|.+.| +.+...|+++|...++++++-+
T Consensus 708 ~eei~kL~~E~~~l~~Ei~~L~~~t~~~lW~~DL~~l~~~y~k~~~~~~e~R 759 (760)
T d1bjta_ 708 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEAR 759 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhhcc
No 10
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=7.34 E-value=5.8e+02 Score=25.77 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH---------------HHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001254 653 EKAEKELEQVTLEI---------------KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLL 711 (1113)
Q Consensus 653 E~a~kE~Eev~lE~---------------~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~ 711 (1113)
+...+++.++..|+ ..++.+...+......+..+|...+..|+.+..+..+|.+-|..+
T Consensus 256 ~~ler~I~qLe~E~~aL~ke~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~l 329 (387)
T d1qvra2 256 DALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREI 329 (387)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!