BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001255
(1113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W12|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W13|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W14|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W15|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
Length = 202
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 906 QLIKASVANDHSIWTKY---FNQILTAVLEVLDDADSSVREVALS--LINEMLKNQKD-- 958
+ I+ +V DH I+TKY N I T V E+L+ + R V + L N + +++D
Sbjct: 6 RYIELAVVADHGIFTKYNSNLNTIRTRVHEMLNTVNGFYRSVDVHAPLANLEVWSKQDLI 65
Query: 959 -VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVL 994
V +DS + + +D +P++S++ LT V+
Sbjct: 66 KVQKDSSKTLKSFGEWRERDLLPRISHDHAQLLTAVV 102
>pdb|1ND1|A Chain A, Amino Acid Sequence And Crystal Structure Of Bap1, A
Metalloproteinase From Bothrops Asper Snake Venom That
Exerts Multiple Tissue-Damaging Activities
Length = 202
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 906 QLIKASVANDHSIWTKY---FNQILTAVLEVLDDADSSVREVALS--LINEMLKNQKD-- 958
+ I+ +V DH I+TKY N I T V E+L+ + R V + L N + +++D
Sbjct: 6 RYIELAVVADHGIFTKYNSNLNTIRTRVHEMLNTVNGFYRSVDVHAPLANLEVWSKQDLI 65
Query: 959 -VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVL 994
V +DS + + +D +P++S++ LT V+
Sbjct: 66 KVQKDSSKTLKSFGEWRERDLLPRISHDHAQLLTAVV 102
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 41/171 (23%)
Query: 926 ILTAVLEVLDDADSSVREVALSLINEMLKN-----QKDVMEDSVEIVIEKLLHVTKDAVP 980
+L + +LD D + E A + ++ ++ DV++ + I+I K L K + P
Sbjct: 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP 188
Query: 981 KVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ 1040
K+ + A V C+N ++ R + LM
Sbjct: 189 KIRSHA--------------------------------VACVNQF--IISR--TQALMLH 212
Query: 1041 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLR 1091
+ SF+ LF G++ +VRK V LV + + LP++ + L+
Sbjct: 213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ 263
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 15/185 (8%)
Query: 543 HHK--VAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLD---- 596
HH+ V ++ + L I C + Y+ ++PH+ L D K LVR TL
Sbjct: 408 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 467
Query: 597 -IVSK---TYSVDSLLPALLRSLD-EQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGIL 651
+VS+ TY + L R LD +R +A + A ++L + A IL
Sbjct: 468 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS----AFATLEEEACTELVPYLAYIL 523
Query: 652 KLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQY 711
+ + H L +A T SV H + + ++ +++ N L+ K
Sbjct: 524 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL 583
Query: 712 TPRIE 716
P +E
Sbjct: 584 FPLLE 588
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 76/186 (40%), Gaps = 8/186 (4%)
Query: 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN-DHSIWTKYFNQILTAVLEVLDDADSS 940
+P++ L+ + + + GALQ++ + S D + + N ++ L+ +
Sbjct: 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 189
Query: 941 VREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS----Q 996
+R A++ +N+ + ++ + ++ IE L + D P+V L ++L +
Sbjct: 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249
Query: 997 YDPFRCLSVIVPLLVTEDEK---TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG 1053
P V L T+D+ L C LT + ++ L+ LP +P L
Sbjct: 250 LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMK 309
Query: 1054 NQSADV 1059
D+
Sbjct: 310 YSDIDI 315
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 41/171 (23%)
Query: 926 ILTAVLEVLDDADSSVREVALSLINEMLKN-----QKDVMEDSVEIVIEKLLHVTKDAVP 980
+L + +LD D + E A + ++ ++ DV++ + I+I K L K + P
Sbjct: 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP 188
Query: 981 KVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ 1040
K+ + A V C+N ++ R + LM
Sbjct: 189 KIRSHA--------------------------------VACVN--QFIISR--TQALMLH 212
Query: 1041 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLR 1091
+ SF+ LF G++ +VRK V LV + + LP++ + L+
Sbjct: 213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ 263
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 15/185 (8%)
Query: 543 HHK--VAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLD---- 596
HH+ V ++ + L I C + Y+ ++PH+ L D K LVR TL
Sbjct: 370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 429
Query: 597 -IVSK---TYSVDSLLPALLRSLD-EQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGIL 651
+VS+ TY + L R LD +R +A + A ++L + A IL
Sbjct: 430 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS----AFATLEEEACTELVPYLAYIL 485
Query: 652 KLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQY 711
+ + H L +A T SV H + + ++ +++ N L+ K
Sbjct: 486 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL 545
Query: 712 TPRIE 716
P +E
Sbjct: 546 FPLLE 550
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 76/186 (40%), Gaps = 8/186 (4%)
Query: 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN-DHSIWTKYFNQILTAVLEVLDDADSS 940
+P++ L+ + + + GALQ++ + S D + + N ++ L+ +
Sbjct: 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 189
Query: 941 VREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS----Q 996
+R A++ +N+ + ++ + ++ IE L + D P+V L ++L +
Sbjct: 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249
Query: 997 YDPFRCLSVIVPLLVTEDEK---TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG 1053
P V L T+D+ L C LT + ++ L+ LP +P L
Sbjct: 250 LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMK 309
Query: 1054 NQSADV 1059
D+
Sbjct: 310 YSDIDI 315
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 41/171 (23%)
Query: 926 ILTAVLEVLDDADSSVREVALSLINEMLKN-----QKDVMEDSVEIVIEKLLHVTKDAVP 980
+L + +LD D + E A + ++ ++ DV++ + I+I K L K + P
Sbjct: 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP 188
Query: 981 KVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ 1040
K+ + A V C+N ++ R + LM
Sbjct: 189 KIRSHA--------------------------------VACVN--QFIISR--TQALMLH 212
Query: 1041 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLR 1091
+ SF+ LF G++ +VRK V LV + + LP++ + L+
Sbjct: 213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQ 263
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 15/185 (8%)
Query: 543 HHK--VAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLD---- 596
HH+ V ++ + L I C + Y+ ++PH+ L D K LVR TL
Sbjct: 383 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 442
Query: 597 -IVSK---TYSVDSLLPALLRSLD-EQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGIL 651
+VS+ TY + L R LD +R +A + A ++L + A IL
Sbjct: 443 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS----AFATLEEEACTELVPYLAYIL 498
Query: 652 KLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQY 711
+ + H L +A T SV H + + ++ +++ N L+ K
Sbjct: 499 DTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL 558
Query: 712 TPRIE 716
P +E
Sbjct: 559 FPLLE 563
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 76/186 (40%), Gaps = 8/186 (4%)
Query: 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN-DHSIWTKYFNQILTAVLEVLDDADSS 940
+P++ L+ + + + GALQ++ + S D + + N ++ L+ +
Sbjct: 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK 189
Query: 941 VREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS----Q 996
+R A++ +N+ + ++ + ++ IE L + D P+V L ++L +
Sbjct: 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249
Query: 997 YDPFRCLSVIVPLLVTEDEK---TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG 1053
P V L T+D+ L C LT + ++ L+ LP +P L
Sbjct: 250 LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMK 309
Query: 1054 NQSADV 1059
D+
Sbjct: 310 YSDIDI 315
>pdb|4A0C|A Chain A, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|B Chain B, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 1253
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 502 ARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSC 561
AR S ++ + P+ I +++N + F + L+DP V + AL T +
Sbjct: 1004 ARSSVVTAVKFTISDHPQPIDPLLKN---CIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1060
Query: 562 RKPFESYMERILPHVFSRLIDPKELVRQ 589
++ +LPH+++ KEL+R+
Sbjct: 1061 PSLIRDLLDTVLPHLYNETKVRKELIRE 1088
>pdb|1U6G|C Chain C, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 1230
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 502 ARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSC 561
AR S ++ + P+ I +++N + F + L+DP V + AL T +
Sbjct: 981 ARSSVVTAVKFTISDHPQPIDPLLKN---CIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1037
Query: 562 RKPFESYMERILPHVFSRLIDPKELVRQ 589
++ +LPH+++ KEL+R+
Sbjct: 1038 PSLIRDLLDTVLPHLYNETKVRKELIRE 1065
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,731,967
Number of Sequences: 62578
Number of extensions: 1182470
Number of successful extensions: 3295
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3259
Number of HSP's gapped (non-prelim): 46
length of query: 1113
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1004
effective length of database: 8,152,335
effective search space: 8184944340
effective search space used: 8184944340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)