Query 001255
Match_columns 1113
No_of_seqs 291 out of 646
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 19:59:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2956 CLIP-associating prote 100.0 3.5E-42 7.6E-47 381.1 36.4 506 503-1110 2-516 (516)
2 PF12348 CLASP_N: CLASP N term 100.0 2.7E-29 5.8E-34 273.4 19.5 194 1-195 28-228 (228)
3 KOG1820 Microtubule-associated 99.9 4.4E-22 9.5E-27 243.5 19.4 215 882-1099 255-471 (815)
4 KOG1820 Microtubule-associated 99.9 7.3E-20 1.6E-24 224.2 31.0 526 494-1102 261-793 (815)
5 PF12348 CLASP_N: CLASP N term 99.8 1.2E-19 2.6E-24 197.6 18.5 198 897-1094 21-228 (228)
6 KOG2171 Karyopherin (importin) 99.5 8.2E-09 1.8E-13 127.8 55.7 396 505-1096 225-695 (1075)
7 KOG1242 Protein containing ada 99.5 1.4E-12 3E-17 152.3 17.6 199 882-1085 135-338 (569)
8 KOG2171 Karyopherin (importin) 99.3 4.9E-09 1.1E-13 129.8 34.6 413 529-1084 117-562 (1075)
9 KOG1242 Protein containing ada 99.1 1.6E-07 3.4E-12 110.6 35.3 176 897-1076 268-448 (569)
10 KOG1824 TATA-binding protein-i 99.1 6E-07 1.3E-11 108.4 36.6 433 496-1089 15-525 (1233)
11 KOG2023 Nuclear transport rece 99.0 7.2E-08 1.6E-12 112.4 26.2 196 897-1095 407-614 (885)
12 KOG2933 Uncharacterized conser 99.0 4.6E-09 1E-13 113.6 12.9 157 17-174 122-278 (334)
13 KOG1824 TATA-binding protein-i 98.9 0.00084 1.8E-08 82.2 52.7 427 495-1085 529-974 (1233)
14 KOG0212 Uncharacterized conser 98.8 1.9E-06 4E-11 99.6 25.5 381 494-1073 8-407 (675)
15 KOG2933 Uncharacterized conser 98.7 2.3E-07 5.1E-12 100.6 14.5 191 881-1075 89-280 (334)
16 KOG2023 Nuclear transport rece 98.7 0.0015 3.2E-08 77.5 45.1 456 490-1096 398-882 (885)
17 PRK13800 putative oxidoreducta 98.6 5.8E-06 1.3E-10 107.5 28.1 119 532-680 623-741 (897)
18 KOG0212 Uncharacterized conser 98.6 6.2E-05 1.4E-09 87.4 30.4 395 495-1013 52-462 (675)
19 KOG0915 Uncharacterized conser 98.5 0.00011 2.4E-09 93.6 33.7 385 496-1055 967-1368(1702)
20 PTZ00429 beta-adaptin; Provisi 98.5 0.00087 1.9E-08 84.2 40.7 176 486-683 34-209 (746)
21 KOG0213 Splicing factor 3b, su 98.5 0.00055 1.2E-08 81.6 35.0 168 921-1089 795-973 (1172)
22 PF01602 Adaptin_N: Adaptin N 98.4 0.00013 2.7E-09 89.8 29.5 163 898-1075 319-486 (526)
23 KOG2956 CLIP-associating prote 98.3 3.5E-05 7.6E-10 88.0 20.2 207 485-704 287-499 (516)
24 KOG1241 Karyopherin (importin) 98.3 0.0036 7.7E-08 75.6 37.0 442 496-1084 227-723 (859)
25 PLN03200 cellulose synthase-in 98.3 0.00078 1.7E-08 91.1 35.1 384 494-1072 454-860 (2102)
26 PF05004 IFRD: Interferon-rela 98.1 0.0005 1.1E-08 78.3 24.8 192 882-1076 45-261 (309)
27 PF01602 Adaptin_N: Adaptin N 98.1 0.0021 4.5E-08 79.1 32.4 435 486-1076 9-448 (526)
28 PRK13800 putative oxidoreducta 98.1 0.00044 9.5E-09 90.2 25.2 115 930-1067 780-894 (897)
29 COG5181 HSH155 U2 snRNP splice 98.0 0.015 3.2E-07 68.6 33.1 139 925-1070 730-868 (975)
30 PF12460 MMS19_C: RNAPII trans 97.9 0.00065 1.4E-08 80.9 21.5 201 881-1088 190-410 (415)
31 KOG1241 Karyopherin (importin) 97.9 0.026 5.6E-07 68.5 32.6 212 881-1097 320-555 (859)
32 KOG1248 Uncharacterized conser 97.9 0.0017 3.8E-08 81.8 23.6 196 897-1095 668-919 (1176)
33 PRK09687 putative lyase; Provi 97.8 0.00043 9.4E-09 77.7 16.0 163 882-1069 55-218 (280)
34 KOG0213 Splicing factor 3b, su 97.8 0.033 7.1E-07 67.1 31.2 161 525-693 794-965 (1172)
35 PF12755 Vac14_Fab1_bd: Vacuol 97.8 0.00034 7.3E-09 65.4 12.1 92 899-991 2-93 (97)
36 KOG0915 Uncharacterized conser 97.8 0.00057 1.2E-08 87.5 17.6 174 882-1060 1000-1189(1702)
37 PLN03200 cellulose synthase-in 97.6 0.25 5.3E-06 68.0 39.2 186 882-1072 448-638 (2102)
38 KOG0211 Protein phosphatase 2A 97.6 0.23 5E-06 62.5 36.0 459 494-1087 167-645 (759)
39 PTZ00429 beta-adaptin; Provisi 97.5 0.59 1.3E-05 59.4 42.6 171 487-681 71-284 (746)
40 PRK09687 putative lyase; Provi 97.5 0.002 4.3E-08 72.4 15.4 159 882-1070 25-186 (280)
41 PF10274 ParcG: Parkin co-regu 97.4 0.00057 1.2E-08 70.6 9.4 101 995-1099 32-135 (183)
42 KOG0211 Protein phosphatase 2A 97.4 0.095 2.1E-06 65.9 30.4 171 896-1074 492-666 (759)
43 KOG1060 Vesicle coat complex A 97.4 0.63 1.4E-05 57.2 34.8 168 488-681 39-208 (968)
44 COG5181 HSH155 U2 snRNP splice 97.4 0.21 4.6E-06 59.4 30.0 151 936-1094 811-972 (975)
45 PF12717 Cnd1: non-SMC mitotic 97.4 0.013 2.8E-07 61.4 18.5 164 897-1068 2-175 (178)
46 PF10508 Proteasom_PSMB: Prote 97.0 1.4 3.1E-05 53.9 37.9 164 506-682 58-231 (503)
47 PF12755 Vac14_Fab1_bd: Vacuol 97.0 0.0075 1.6E-07 56.4 10.7 92 502-597 2-93 (97)
48 KOG0166 Karyopherin (importin) 96.8 0.024 5.3E-07 67.4 15.8 187 882-1071 196-392 (514)
49 KOG2160 Armadillo/beta-catenin 96.7 0.1 2.2E-06 59.0 19.3 177 897-1075 97-285 (342)
50 KOG1967 DNA repair/transcripti 96.7 0.011 2.4E-07 73.0 12.1 152 881-1070 868-1022(1030)
51 cd03567 VHS_GGA VHS domain fam 96.6 0.044 9.5E-07 54.8 13.8 111 494-615 13-131 (139)
52 cd00020 ARM Armadillo/beta-cat 96.6 0.015 3.2E-07 55.7 10.1 104 967-1071 8-119 (120)
53 PF02985 HEAT: HEAT repeat; I 96.6 0.0031 6.6E-08 45.9 3.9 30 1044-1073 1-30 (31)
54 KOG1062 Vesicle coat complex A 96.6 0.11 2.3E-06 63.8 18.9 194 897-1100 156-412 (866)
55 KOG2025 Chromosome condensatio 96.5 0.066 1.4E-06 64.6 16.5 184 898-1098 100-291 (892)
56 cd00020 ARM Armadillo/beta-cat 96.5 0.02 4.4E-07 54.7 10.5 110 881-994 8-119 (120)
57 COG5215 KAP95 Karyopherin (imp 96.5 3.1 6.7E-05 49.7 34.0 200 880-1084 321-541 (858)
58 PF05004 IFRD: Interferon-rela 96.4 0.17 3.6E-06 57.9 18.9 191 486-684 45-259 (309)
59 PF00790 VHS: VHS domain; Int 96.4 0.036 7.8E-07 55.7 11.9 107 494-611 17-129 (140)
60 PF10508 Proteasom_PSMB: Prote 96.4 0.18 3.8E-06 61.8 20.2 190 885-1084 43-241 (503)
61 PF13251 DUF4042: Domain of un 96.4 0.031 6.7E-07 58.4 11.4 133 941-1073 2-175 (182)
62 KOG2032 Uncharacterized conser 96.4 0.087 1.9E-06 61.5 15.8 214 883-1098 216-443 (533)
63 COG5240 SEC21 Vesicle coat com 96.2 0.14 3E-06 60.4 16.3 49 1043-1093 526-579 (898)
64 PF13513 HEAT_EZ: HEAT-like re 96.2 0.0071 1.5E-07 50.1 4.5 54 1015-1069 1-54 (55)
65 KOG1240 Protein kinase contain 96.2 0.87 1.9E-05 58.5 23.9 123 882-1011 619-745 (1431)
66 PF13646 HEAT_2: HEAT repeats; 96.1 0.034 7.4E-07 50.5 9.2 85 968-1067 1-87 (88)
67 KOG0392 SNF2 family DNA-depend 96.1 0.079 1.7E-06 67.5 14.5 176 899-1076 749-929 (1549)
68 cd03568 VHS_STAM VHS domain fa 96.0 0.13 2.8E-06 51.8 13.5 106 494-610 12-120 (144)
69 PF12231 Rif1_N: Rap1-interact 95.9 0.87 1.9E-05 53.6 22.1 201 898-1102 8-239 (372)
70 PF04118 Dopey_N: Dopey, N-ter 95.9 0.12 2.6E-06 58.7 14.1 178 502-683 71-255 (307)
71 PF12717 Cnd1: non-SMC mitotic 95.8 0.22 4.8E-06 52.1 14.8 128 938-1069 1-136 (178)
72 KOG2032 Uncharacterized conser 95.8 0.39 8.4E-06 56.3 17.6 180 495-681 226-415 (533)
73 PF10274 ParcG: Parkin co-regu 95.8 0.17 3.7E-06 52.6 13.4 126 880-1009 38-180 (183)
74 COG5218 YCG1 Chromosome conden 95.8 0.3 6.5E-06 57.9 16.6 202 883-1104 94-299 (885)
75 PF13513 HEAT_EZ: HEAT-like re 95.8 0.017 3.6E-07 47.9 5.0 54 940-993 2-55 (55)
76 KOG1062 Vesicle coat complex A 95.7 4.8 0.0001 50.1 27.1 101 487-602 73-173 (866)
77 KOG1243 Protein kinase [Genera 95.7 0.17 3.8E-06 61.6 14.8 139 946-1087 272-418 (690)
78 cd03561 VHS VHS domain family; 95.7 0.14 3.1E-06 50.9 12.0 100 495-605 13-117 (133)
79 KOG1943 Beta-tubulin folding c 95.7 0.27 5.8E-06 62.3 16.7 210 876-1088 206-474 (1133)
80 cd03569 VHS_Hrs_Vps27p VHS dom 95.6 0.23 4.9E-06 50.0 13.3 105 495-610 17-124 (142)
81 cd03565 VHS_Tom1 VHS domain fa 95.6 0.17 3.8E-06 50.8 12.5 106 494-610 13-125 (141)
82 cd03572 ENTH_epsin_related ENT 95.4 0.11 2.3E-06 50.6 9.8 88 903-995 21-119 (122)
83 smart00288 VHS Domain present 95.4 0.29 6.2E-06 48.7 13.0 105 495-610 13-121 (133)
84 PF13646 HEAT_2: HEAT repeats; 95.3 0.092 2E-06 47.6 8.7 84 928-1025 2-87 (88)
85 COG5215 KAP95 Karyopherin (imp 95.2 10 0.00022 45.6 36.4 164 907-1076 580-763 (858)
86 KOG1248 Uncharacterized conser 95.1 3.7 7.9E-05 53.2 24.2 182 496-683 664-857 (1176)
87 COG5096 Vesicle coat complex, 95.0 0.37 8E-06 60.3 15.1 125 934-1072 28-156 (757)
88 PF13251 DUF4042: Domain of un 95.0 0.31 6.7E-06 51.0 12.4 133 898-1030 1-174 (182)
89 cd00197 VHS_ENTH_ANTH VHS, ENT 95.0 0.27 5.8E-06 47.5 11.2 98 495-599 9-114 (115)
90 TIGR02270 conserved hypothetic 95.0 0.51 1.1E-05 55.9 15.6 116 927-1068 88-203 (410)
91 KOG0803 Predicted E3 ubiquitin 94.9 0.86 1.9E-05 60.5 18.8 194 878-1075 39-266 (1312)
92 KOG2149 Uncharacterized conser 94.7 0.39 8.5E-06 55.2 13.2 116 882-1001 60-176 (393)
93 KOG1240 Protein kinase contain 94.5 0.8 1.7E-05 58.8 16.2 189 897-1100 437-641 (1431)
94 KOG0166 Karyopherin (importin) 94.5 0.72 1.6E-05 55.3 15.0 185 882-1072 154-351 (514)
95 PF04118 Dopey_N: Dopey, N-ter 94.4 1 2.2E-05 51.3 15.5 170 899-1069 71-251 (307)
96 KOG2259 Uncharacterized conser 94.4 0.55 1.2E-05 56.7 13.6 176 883-1067 237-470 (823)
97 KOG1837 Uncharacterized conser 94.3 1.1 2.3E-05 59.2 17.1 183 898-1082 1409-1621(1621)
98 KOG1059 Vesicle coat complex A 94.3 1.6 3.5E-05 53.4 17.3 71 880-959 144-215 (877)
99 KOG1020 Sister chromatid cohes 94.3 0.96 2.1E-05 59.4 16.4 149 919-1073 810-961 (1692)
100 PF12719 Cnd3: Nuclear condens 94.2 0.58 1.3E-05 53.3 13.4 128 944-1071 2-142 (298)
101 cd03568 VHS_STAM VHS domain fa 93.9 0.41 8.8E-06 48.3 10.1 92 903-999 20-114 (144)
102 cd03561 VHS VHS domain family; 93.8 0.67 1.4E-05 46.1 11.4 93 903-1000 20-117 (133)
103 PF04826 Arm_2: Armadillo-like 93.8 2 4.4E-05 47.6 16.1 186 882-1076 14-209 (254)
104 cd03567 VHS_GGA VHS domain fam 93.8 1.6 3.6E-05 43.7 14.0 93 902-999 20-120 (139)
105 KOG1061 Vesicle coat complex A 93.7 15 0.00033 45.8 24.5 105 494-606 129-234 (734)
106 cd00197 VHS_ENTH_ANTH VHS, ENT 93.7 0.97 2.1E-05 43.6 12.0 89 901-994 18-114 (115)
107 PF12460 MMS19_C: RNAPII trans 93.6 3.2 6.9E-05 49.7 18.6 126 922-1050 268-413 (415)
108 PF00790 VHS: VHS domain; Int 93.5 1.1 2.4E-05 44.9 12.5 94 902-1000 24-123 (140)
109 PF10363 DUF2435: Protein of u 93.5 0.5 1.1E-05 43.8 9.0 72 1008-1081 10-81 (92)
110 KOG4653 Uncharacterized conser 93.4 2.4 5.1E-05 53.0 16.9 186 883-1083 730-929 (982)
111 KOG1967 DNA repair/transcripti 93.3 0.28 6.1E-06 61.1 9.1 111 883-997 912-1026(1030)
112 KOG1078 Vesicle coat complex C 93.3 29 0.00062 43.5 29.4 160 501-684 115-276 (865)
113 KOG2137 Protein kinase [Signal 93.2 3.3 7.1E-05 51.1 17.6 101 961-1065 384-489 (700)
114 cd03565 VHS_Tom1 VHS domain fa 93.0 0.53 1.1E-05 47.3 9.2 93 903-1000 21-120 (141)
115 COG5096 Vesicle coat complex, 93.0 3.4 7.3E-05 52.1 17.9 182 889-1086 28-213 (757)
116 PF02985 HEAT: HEAT repeat; I 93.0 0.18 3.9E-06 36.5 4.3 31 967-997 1-31 (31)
117 PF08167 RIX1: rRNA processing 92.8 1.3 2.9E-05 45.7 12.1 126 963-1090 22-161 (165)
118 KOG4524 Uncharacterized conser 92.8 38 0.00081 43.6 31.6 157 930-1086 808-988 (1014)
119 KOG2149 Uncharacterized conser 92.7 1.1 2.3E-05 51.8 12.0 123 485-612 59-182 (393)
120 PF14500 MMS19_N: Dos2-interac 92.6 20 0.00044 39.9 22.6 139 495-638 8-155 (262)
121 PF10521 DUF2454: Protein of u 92.4 3.6 7.9E-05 46.4 15.9 143 913-1056 107-278 (282)
122 PLN03076 ARF guanine nucleotid 92.3 6.8 0.00015 54.4 20.8 178 898-1076 1152-1380(1780)
123 KOG0392 SNF2 family DNA-depend 92.1 2 4.4E-05 55.5 14.3 151 923-1074 75-239 (1549)
124 PF08167 RIX1: rRNA processing 91.9 2.4 5.1E-05 43.9 12.7 113 882-999 27-147 (165)
125 cd03569 VHS_Hrs_Vps27p VHS dom 91.9 3.2 6.9E-05 41.8 13.2 93 903-1000 24-119 (142)
126 COG1413 FOG: HEAT repeat [Ener 91.7 5.6 0.00012 45.9 17.0 90 881-994 44-134 (335)
127 PF12231 Rif1_N: Rap1-interact 91.7 10 0.00022 44.6 19.1 189 882-1075 92-306 (372)
128 KOG1087 Cytosolic sorting prot 91.6 1 2.2E-05 53.8 10.6 98 494-604 13-116 (470)
129 PF12830 Nipped-B_C: Sister ch 91.6 1.5 3.2E-05 46.4 10.9 69 965-1033 7-77 (187)
130 PF10363 DUF2435: Protein of u 91.4 1.7 3.6E-05 40.4 9.6 87 882-980 5-91 (92)
131 TIGR02270 conserved hypothetic 91.3 3.3 7.1E-05 49.2 14.5 118 927-1070 56-174 (410)
132 PF04388 Hamartin: Hamartin pr 91.1 2.4 5.1E-05 53.6 13.8 141 930-1085 9-153 (668)
133 smart00288 VHS Domain present 91.1 2.5 5.4E-05 42.1 11.3 91 903-998 20-114 (133)
134 PF14500 MMS19_N: Dos2-interac 91.0 19 0.00042 40.2 19.4 183 898-1085 55-251 (262)
135 COG5095 TAF6 Transcription ini 90.9 2.9 6.3E-05 46.1 12.2 201 883-1095 200-427 (450)
136 COG5218 YCG1 Chromosome conden 90.8 7.6 0.00017 46.7 16.3 157 900-1065 27-192 (885)
137 KOG2274 Predicted importin 9 [ 90.6 15 0.00033 46.5 19.3 144 938-1083 586-749 (1005)
138 COG1413 FOG: HEAT repeat [Ener 90.3 6.3 0.00014 45.5 15.6 152 881-1069 75-239 (335)
139 PF08161 NUC173: NUC173 domain 90.2 2.6 5.7E-05 44.9 11.1 74 938-1011 13-86 (198)
140 cd03572 ENTH_epsin_related ENT 90.1 2.5 5.3E-05 41.3 9.8 99 495-600 10-119 (122)
141 KOG1020 Sister chromatid cohes 89.9 2.7 5.8E-05 55.5 12.7 148 945-1099 797-957 (1692)
142 KOG0168 Putative ubiquitin fus 89.8 11 0.00025 47.2 17.2 179 881-1071 168-363 (1051)
143 PF05918 API5: Apoptosis inhib 89.8 17 0.00036 44.7 18.7 160 888-1054 11-189 (556)
144 PF12783 Sec7_N: Guanine nucle 89.8 2.9 6.2E-05 43.3 11.0 88 498-585 34-128 (168)
145 KOG2549 Transcription initiati 89.6 10 0.00023 45.5 16.2 135 882-1029 209-369 (576)
146 KOG2274 Predicted importin 9 [ 89.4 9.6 0.00021 48.2 16.3 171 898-1073 506-690 (1005)
147 PF14664 RICTOR_N: Rapamycin-i 89.4 11 0.00024 44.2 16.6 139 936-1083 36-185 (371)
148 KOG1060 Vesicle coat complex A 89.3 10 0.00022 47.3 16.2 165 886-1071 40-208 (968)
149 KOG1525 Sister chromatid cohes 89.3 3.8 8.1E-05 54.6 13.7 142 882-1031 261-406 (1266)
150 KOG4224 Armadillo repeat prote 88.9 3.7 8E-05 46.5 11.3 145 927-1072 210-363 (550)
151 PF08623 TIP120: TATA-binding 88.7 2.7 5.8E-05 43.5 9.5 97 977-1075 38-150 (169)
152 KOG2062 26S proteasome regulat 88.3 5.8 0.00012 48.9 13.2 143 930-1086 524-667 (929)
153 KOG4535 HEAT and armadillo rep 88.2 3.3 7.1E-05 48.5 10.6 135 898-1032 11-181 (728)
154 PF11640 TAN: Telomere-length 88.1 8.9 0.00019 39.2 13.0 109 882-993 6-135 (155)
155 KOG1077 Vesicle coat complex A 88.0 21 0.00045 44.1 17.3 87 1001-1091 329-422 (938)
156 PF05536 Neurochondrin: Neuroc 87.6 15 0.00032 45.5 16.7 189 881-1074 6-215 (543)
157 PF11640 TAN: Telomere-length 87.4 7 0.00015 39.9 11.8 96 485-584 5-120 (155)
158 KOG1059 Vesicle coat complex A 87.4 15 0.00032 45.4 15.8 167 487-682 147-328 (877)
159 cd08050 TAF6 TATA Binding Prot 87.1 5.9 0.00013 46.1 12.3 105 883-1000 181-302 (343)
160 PF11698 V-ATPase_H_C: V-ATPas 86.9 2.9 6.4E-05 40.5 8.0 70 1001-1072 43-115 (119)
161 PF12765 Cohesin_HEAT: HEAT re 86.6 0.82 1.8E-05 35.8 3.3 26 1042-1067 17-42 (42)
162 PF10521 DUF2454: Protein of u 86.3 9.7 0.00021 43.0 13.2 129 958-1086 111-267 (282)
163 PF08064 UME: UME (NUC010) dom 86.2 5.4 0.00012 38.1 9.4 71 1013-1086 27-98 (107)
164 KOG2137 Protein kinase [Signal 85.9 22 0.00049 44.2 16.6 122 927-1051 391-520 (700)
165 KOG2259 Uncharacterized conser 85.9 30 0.00064 42.6 17.1 133 487-630 200-347 (823)
166 PF05918 API5: Apoptosis inhib 85.6 9.6 0.00021 46.7 13.3 107 902-1017 3-112 (556)
167 KOG4653 Uncharacterized conser 85.6 34 0.00074 43.4 17.8 116 882-998 804-921 (982)
168 PF04826 Arm_2: Armadillo-like 85.2 9.3 0.0002 42.4 12.1 135 930-1070 17-161 (254)
169 KOG0414 Chromosome condensatio 85.1 27 0.00058 45.7 17.1 144 947-1101 297-453 (1251)
170 PF12830 Nipped-B_C: Sister ch 85.0 21 0.00046 37.7 14.3 71 487-566 11-81 (187)
171 PF08064 UME: UME (NUC010) dom 84.8 15 0.00032 35.1 11.7 87 920-1008 6-96 (107)
172 PF03224 V-ATPase_H_N: V-ATPas 84.1 21 0.00045 40.9 14.9 149 881-1033 106-272 (312)
173 PLN03076 ARF guanine nucleotid 84.0 36 0.00077 47.7 18.9 172 903-1075 1244-1492(1780)
174 KOG4535 HEAT and armadillo rep 83.6 64 0.0014 38.4 17.9 177 897-1075 61-327 (728)
175 PF03378 CAS_CSE1: CAS/CSE pro 82.9 21 0.00046 42.8 14.7 80 984-1065 177-266 (435)
176 KOG1087 Cytosolic sorting prot 82.7 5.1 0.00011 48.0 9.2 76 924-999 37-116 (470)
177 smart00802 UME Domain in UVSB 82.4 20 0.00044 34.2 11.4 86 920-1007 6-95 (107)
178 PF08767 CRM1_C: CRM1 C termin 81.8 43 0.00094 38.5 16.2 165 899-1063 43-236 (319)
179 KOG1525 Sister chromatid cohes 81.5 38 0.00082 45.6 17.2 71 1002-1073 260-330 (1266)
180 COG5240 SEC21 Vesicle coat com 81.2 9.1 0.0002 45.9 10.2 152 506-679 357-513 (898)
181 COG5098 Chromosome condensatio 81.1 39 0.00084 41.8 15.4 101 898-1000 314-419 (1128)
182 PF12783 Sec7_N: Guanine nucle 80.9 13 0.00028 38.4 10.5 106 4-109 46-158 (168)
183 KOG1243 Protein kinase [Genera 80.8 18 0.00039 44.9 12.8 141 963-1103 327-520 (690)
184 KOG2199 Signal transducing ada 80.1 8.9 0.00019 44.0 9.3 105 897-1010 26-136 (462)
185 cd08050 TAF6 TATA Binding Prot 80.0 27 0.00059 40.6 13.8 110 494-612 186-311 (343)
186 KOG2160 Armadillo/beta-catenin 80.0 1.1E+02 0.0023 35.4 17.9 142 883-1029 127-281 (342)
187 KOG1949 Uncharacterized conser 79.7 24 0.00051 43.6 13.1 143 928-1073 177-332 (1005)
188 KOG1993 Nuclear transport rece 79.5 40 0.00088 42.4 15.2 126 883-1011 529-662 (978)
189 KOG1061 Vesicle coat complex A 79.2 16 0.00034 45.7 11.8 174 885-1076 91-272 (734)
190 PF08713 DNA_alkylation: DNA a 78.1 12 0.00026 40.0 9.6 99 977-1084 98-196 (213)
191 PF14664 RICTOR_N: Rapamycin-i 78.0 72 0.0016 37.6 16.6 170 898-1072 83-269 (371)
192 KOG2549 Transcription initiati 77.9 8.3 0.00018 46.3 8.7 180 487-684 210-417 (576)
193 PF08767 CRM1_C: CRM1 C termin 77.8 94 0.002 35.8 17.3 133 944-1076 46-198 (319)
194 KOG2025 Chromosome condensatio 77.7 38 0.00083 42.1 14.1 132 923-1067 83-217 (892)
195 PF13001 Ecm29: Proteasome sta 77.6 20 0.00043 44.1 12.3 142 486-636 320-488 (501)
196 PF01347 Vitellogenin_N: Lipop 77.3 29 0.00062 43.8 14.1 132 926-1069 432-586 (618)
197 cd00256 VATPase_H VATPase_H, r 76.5 35 0.00075 40.8 13.4 70 1001-1072 353-425 (429)
198 smart00638 LPD_N Lipoprotein N 76.1 55 0.0012 40.9 16.1 166 883-1069 360-542 (574)
199 PF08389 Xpo1: Exportin 1-like 76.1 55 0.0012 32.3 13.3 135 905-1067 10-148 (148)
200 KOG2199 Signal transducing ada 76.0 29 0.00062 40.1 11.8 107 495-612 21-130 (462)
201 COG5116 RPN2 26S proteasome re 76.0 25 0.00053 42.4 11.6 142 930-1085 521-663 (926)
202 PF11865 DUF3385: Domain of un 75.6 19 0.00042 37.0 9.8 146 922-1073 7-158 (160)
203 PF12074 DUF3554: Domain of un 75.2 54 0.0012 38.0 14.6 161 924-1085 60-256 (339)
204 KOG1077 Vesicle coat complex A 75.2 2.3E+02 0.005 35.6 32.2 115 901-1019 307-422 (938)
205 PF12719 Cnd3: Nuclear condens 75.1 1.5E+02 0.0034 33.5 18.3 103 923-1029 24-142 (298)
206 KOG0946 ER-Golgi vesicle-tethe 75.0 1.6E+02 0.0034 37.4 18.3 151 882-1033 63-244 (970)
207 KOG0946 ER-Golgi vesicle-tethe 75.0 55 0.0012 41.2 14.5 170 880-1072 22-195 (970)
208 PF01417 ENTH: ENTH domain; I 74.2 30 0.00064 33.9 10.3 95 496-599 13-120 (125)
209 KOG1517 Guanine nucleotide bin 74.0 55 0.0012 42.5 14.5 100 897-997 571-673 (1387)
210 PF08569 Mo25: Mo25-like; Int 73.5 59 0.0013 37.7 14.0 112 882-996 166-284 (335)
211 KOG2011 Sister chromatid cohes 73.4 42 0.00091 43.9 13.8 115 66-194 262-378 (1048)
212 KOG0168 Putative ubiquitin fus 73.2 2.8E+02 0.0061 35.7 29.6 167 487-663 170-345 (1051)
213 PF08506 Cse1: Cse1; InterPro 72.8 75 0.0016 37.4 15.0 125 939-1067 225-370 (370)
214 COG5064 SRP1 Karyopherin (impo 72.7 41 0.00088 38.2 11.7 185 882-1074 73-271 (526)
215 KOG2062 26S proteasome regulat 72.2 31 0.00068 42.9 11.6 156 883-1056 521-678 (929)
216 KOG0414 Chromosome condensatio 72.1 77 0.0017 41.8 15.5 139 922-1068 916-1060(1251)
217 KOG1991 Nuclear transport rece 72.0 1.7E+02 0.0037 38.1 18.1 179 901-1086 390-587 (1010)
218 COG5064 SRP1 Karyopherin (impo 71.9 15 0.00032 41.6 8.2 157 922-1082 240-410 (526)
219 PF08623 TIP120: TATA-binding 71.6 19 0.00041 37.3 8.4 78 114-196 40-117 (169)
220 PF05804 KAP: Kinesin-associat 71.5 1.3E+02 0.0028 38.5 17.3 152 921-1074 486-651 (708)
221 KOG1517 Guanine nucleotide bin 71.0 13 0.00029 47.6 8.4 89 97-187 596-689 (1387)
222 COG5116 RPN2 26S proteasome re 70.9 23 0.00049 42.7 9.8 120 883-1019 518-639 (926)
223 KOG0803 Predicted E3 ubiquitin 70.4 62 0.0013 43.8 14.8 135 486-636 43-177 (1312)
224 KOG2842 Interferon-related pro 70.0 1.9E+02 0.004 33.9 16.3 186 886-1074 66-275 (427)
225 COG5095 TAF6 Transcription ini 69.7 16 0.00035 40.6 7.8 105 488-605 201-321 (450)
226 KOG3961 Uncharacterized conser 69.6 10 0.00022 40.3 5.9 82 1003-1085 116-200 (262)
227 PF03224 V-ATPase_H_N: V-ATPas 69.0 1.9E+02 0.0041 33.0 17.1 173 898-1075 72-269 (312)
228 KOG1949 Uncharacterized conser 68.8 84 0.0018 39.1 14.0 142 534-682 178-331 (1005)
229 PF09324 DUF1981: Domain of un 68.7 24 0.00052 32.2 7.7 68 925-992 17-85 (86)
230 PF12074 DUF3554: Domain of un 68.7 87 0.0019 36.3 14.4 158 23-187 60-250 (339)
231 KOG1058 Vesicle coat complex C 68.5 1.1E+02 0.0024 38.5 15.0 140 528-680 315-461 (948)
232 KOG1943 Beta-tubulin folding c 68.4 81 0.0018 41.2 14.4 146 923-1073 339-501 (1133)
233 PF08568 Kinetochor_Ybp2: Unch 68.3 1E+02 0.0022 39.0 16.0 75 980-1054 80-176 (633)
234 KOG0567 HEAT repeat-containing 68.0 2E+02 0.0044 32.0 16.4 88 967-1069 188-277 (289)
235 KOG4224 Armadillo repeat prote 67.8 1.2E+02 0.0027 34.9 14.2 146 924-1071 250-404 (550)
236 PF03378 CAS_CSE1: CAS/CSE pro 67.3 2.4E+02 0.0051 34.1 17.8 174 906-1084 52-242 (435)
237 cd00256 VATPase_H VATPase_H, r 67.0 2.8E+02 0.0062 33.3 18.2 147 882-1031 103-259 (429)
238 PF01417 ENTH: ENTH domain; I 66.9 25 0.00055 34.4 8.1 73 921-993 35-119 (125)
239 PF11701 UNC45-central: Myosin 66.8 65 0.0014 33.0 11.3 130 937-1069 17-156 (157)
240 KOG4413 26S proteasome regulat 66.4 36 0.00078 38.4 9.6 104 978-1082 55-166 (524)
241 smart00802 UME Domain in UVSB 66.3 39 0.00085 32.3 8.8 67 1015-1084 29-96 (107)
242 PF11864 DUF3384: Domain of un 65.8 1.7E+02 0.0038 35.5 16.6 163 903-1071 154-329 (464)
243 cd06561 AlkD_like A new struct 64.8 1.8E+02 0.004 30.3 16.0 77 103-187 108-184 (197)
244 PF01603 B56: Protein phosphat 64.1 2.6E+02 0.0056 33.4 17.3 182 882-1069 135-323 (409)
245 KOG2022 Nuclear transport rece 64.0 2.9E+02 0.0063 35.7 17.7 114 938-1054 522-643 (982)
246 PF05536 Neurochondrin: Neuroc 63.3 1.6E+02 0.0034 36.7 15.7 154 922-1077 95-266 (543)
247 PF00514 Arm: Armadillo/beta-c 63.2 14 0.0003 28.4 4.3 29 1043-1071 12-40 (41)
248 PF11841 DUF3361: Domain of un 62.8 1.1E+02 0.0024 31.4 11.8 119 881-1000 12-136 (160)
249 PF11707 Npa1: Ribosome 60S bi 62.1 92 0.002 36.0 12.8 103 967-1075 28-146 (330)
250 PF08569 Mo25: Mo25-like; Int 61.6 2.7E+02 0.0059 32.3 16.2 179 882-1067 78-278 (335)
251 KOG4524 Uncharacterized conser 61.0 37 0.00081 43.6 9.6 110 42-153 566-683 (1014)
252 PF04388 Hamartin: Hamartin pr 60.9 58 0.0013 41.4 11.6 74 924-999 69-144 (668)
253 PF14225 MOR2-PAG1_C: Cell mor 60.7 2.4E+02 0.0053 31.5 15.2 138 882-1033 113-257 (262)
254 KOG0413 Uncharacterized conser 59.3 1.5E+02 0.0033 38.3 14.0 134 923-1059 1004-1164(1529)
255 KOG2973 Uncharacterized conser 59.2 93 0.002 35.2 11.2 54 927-980 5-58 (353)
256 KOG0413 Uncharacterized conser 59.0 91 0.002 40.2 12.1 67 922-991 469-535 (1529)
257 cd03571 ENTH_epsin ENTH domain 58.8 70 0.0015 31.4 9.3 73 921-993 33-116 (123)
258 KOG3961 Uncharacterized conser 57.9 48 0.001 35.4 8.3 126 879-1009 113-255 (262)
259 PF12612 TFCD_C: Tubulin foldi 57.6 36 0.00078 36.1 7.8 133 498-636 19-158 (193)
260 PF12333 Ipi1_N: Rix1 complex 57.5 33 0.00072 32.4 6.6 62 1034-1102 2-64 (102)
261 PF08506 Cse1: Cse1; InterPro 57.0 1.2E+02 0.0026 35.8 12.5 123 38-167 225-369 (370)
262 KOG4825 Component of synaptic 56.8 2.7E+02 0.0058 33.0 14.6 181 497-683 404-598 (666)
263 PF11698 V-ATPase_H_C: V-ATPas 56.6 63 0.0014 31.5 8.4 70 924-995 42-115 (119)
264 PF13001 Ecm29: Proteasome sta 56.6 1.2E+02 0.0026 37.3 13.1 115 957-1075 14-137 (501)
265 PF11865 DUF3385: Domain of un 55.9 47 0.001 34.1 8.0 67 928-994 89-156 (160)
266 KOG2759 Vacuolar H+-ATPase V1 55.0 1.3E+02 0.0029 35.4 12.0 72 999-1072 364-438 (442)
267 KOG1822 Uncharacterized conser 54.2 3.2E+02 0.0069 38.3 16.6 116 883-1000 918-1043(2067)
268 KOG2081 Nuclear transport regu 52.8 5.2E+02 0.011 31.8 17.4 149 922-1075 288-460 (559)
269 KOG2973 Uncharacterized conser 51.2 2.2E+02 0.0047 32.4 12.4 174 487-677 6-198 (353)
270 PF08161 NUC173: NUC173 domain 51.1 1.4E+02 0.003 31.9 10.9 98 38-139 14-112 (198)
271 COG5098 Chromosome condensatio 50.9 2.8E+02 0.0061 34.8 14.1 56 1017-1074 362-417 (1128)
272 KOG2081 Nuclear transport regu 50.2 4.8E+02 0.01 32.1 15.9 156 883-1049 390-555 (559)
273 PF05804 KAP: Kinesin-associat 49.7 2.2E+02 0.0047 36.5 13.9 149 43-196 507-673 (708)
274 smart00638 LPD_N Lipoprotein N 49.4 1.6E+02 0.0034 36.9 12.8 89 979-1075 410-512 (574)
275 KOG2611 Neurochondrin/leucine- 49.1 5.6E+02 0.012 31.0 16.4 182 882-1068 13-221 (698)
276 PF12530 DUF3730: Protein of u 49.1 3.9E+02 0.0085 29.2 16.0 128 934-1072 10-151 (234)
277 KOG1078 Vesicle coat complex C 48.8 2.4E+02 0.0051 35.9 13.4 31 142-172 501-531 (865)
278 PF12765 Cohesin_HEAT: HEAT re 48.6 21 0.00046 27.9 3.2 26 924-949 17-42 (42)
279 PF12333 Ipi1_N: Rix1 complex 48.5 77 0.0017 29.9 7.6 60 919-978 5-65 (102)
280 COG5656 SXM1 Importin, protein 47.9 1.4E+02 0.003 37.6 11.2 126 945-1074 390-530 (970)
281 PF01347 Vitellogenin_N: Lipop 46.9 73 0.0016 40.1 9.5 86 979-1075 448-556 (618)
282 KOG4199 Uncharacterized conser 46.4 5.2E+02 0.011 29.9 15.9 37 1046-1082 286-324 (461)
283 KOG1993 Nuclear transport rece 46.0 4.3E+02 0.0093 33.9 14.9 140 939-1082 501-657 (978)
284 KOG0889 Histone acetyltransfer 45.0 1.4E+02 0.003 44.1 11.8 151 924-1075 983-1158(3550)
285 KOG1822 Uncharacterized conser 44.2 9.7E+02 0.021 34.1 18.7 198 903-1102 1804-2041(2067)
286 PF14228 MOR2-PAG1_mid: Cell m 44.0 5.4E+02 0.012 34.9 16.6 70 926-996 504-573 (1120)
287 cd03562 CID CID (CTD-Interacti 43.9 1.3E+02 0.0028 28.7 8.6 92 77-174 17-109 (114)
288 PF14911 MMS22L_C: S-phase gen 43.7 1.5E+02 0.0032 34.8 10.3 105 943-1054 229-348 (373)
289 KOG0929 Guanine nucleotide exc 43.6 1E+02 0.0022 42.2 9.9 136 917-1076 1166-1302(1514)
290 PF06371 Drf_GBD: Diaphanous G 43.4 94 0.002 32.3 8.2 56 1015-1071 130-186 (187)
291 KOG1293 Proteins containing ar 43.0 7.8E+02 0.017 30.9 19.0 133 936-1070 388-531 (678)
292 PF10193 Telomere_reg-2: Telom 42.5 2.7E+02 0.0058 26.9 10.4 74 938-1015 18-98 (114)
293 PF11919 DUF3437: Domain of un 42.4 34 0.00073 31.6 4.0 78 1017-1096 5-82 (90)
294 PF06371 Drf_GBD: Diaphanous G 42.4 1.6E+02 0.0034 30.6 9.7 47 81-128 132-185 (187)
295 KOG3678 SARM protein (with ste 41.9 2.7E+02 0.0059 33.2 11.7 73 880-957 180-254 (832)
296 KOG2011 Sister chromatid cohes 40.4 2.1E+02 0.0045 37.9 11.7 114 972-1087 293-417 (1048)
297 cd03562 CID CID (CTD-Interacti 40.4 2.4E+02 0.0052 26.8 9.8 104 883-996 5-109 (114)
298 PF01603 B56: Protein phosphat 40.1 6.6E+02 0.014 30.0 15.5 180 487-677 136-321 (409)
299 PF11707 Npa1: Ribosome 60S bi 40.0 3.6E+02 0.0079 31.1 13.0 150 927-1076 58-241 (330)
300 smart00273 ENTH Epsin N-termin 40.0 2.7E+02 0.0058 27.2 10.3 63 496-565 12-75 (127)
301 smart00582 RPR domain present 39.9 93 0.002 30.0 7.0 77 529-607 31-116 (121)
302 KOG4825 Component of synaptic 39.9 3.6E+02 0.0077 32.1 12.2 172 897-1072 407-597 (666)
303 cd06561 AlkD_like A new struct 39.9 4.5E+02 0.0098 27.3 16.8 76 1004-1085 108-183 (197)
304 PF14726 RTTN_N: Rotatin, an a 39.8 3E+02 0.0064 26.0 9.8 59 898-956 2-61 (98)
305 PF11864 DUF3384: Domain of un 39.8 7.7E+02 0.017 29.9 16.4 130 899-1035 193-336 (464)
306 KOG1848 Uncharacterized conser 39.7 1.1E+03 0.023 32.5 17.6 108 964-1071 995-1131(1610)
307 PF07778 CENP-I: Mis6 ; Inter 39.1 1.9E+02 0.0041 35.5 10.7 133 547-687 80-224 (511)
308 PF03542 Tuberin: Tuberin; In 39.1 5.1E+02 0.011 30.4 13.8 131 495-633 151-300 (356)
309 PF12612 TFCD_C: Tubulin foldi 38.9 2.8E+02 0.006 29.3 10.9 106 962-1073 3-117 (193)
310 PF02854 MIF4G: MIF4G domain; 38.7 4.6E+02 0.01 27.0 17.4 20 1060-1079 144-163 (209)
311 PF08389 Xpo1: Exportin 1-like 38.2 3.9E+02 0.0084 26.1 13.2 116 902-1025 26-148 (148)
312 KOG0567 HEAT repeat-containing 38.2 3.6E+02 0.0078 30.1 11.4 19 976-994 110-128 (289)
313 PF12243 CTK3: CTD kinase subu 38.0 3.7E+02 0.008 27.1 10.8 106 63-173 6-119 (139)
314 KOG4199 Uncharacterized conser 37.3 4.9E+02 0.011 30.1 12.5 141 927-1070 285-442 (461)
315 KOG1058 Vesicle coat complex C 36.4 1E+03 0.023 30.5 31.5 155 923-1082 315-475 (948)
316 KOG1991 Nuclear transport rece 36.3 1.2E+03 0.025 31.0 20.9 126 897-1032 18-158 (1010)
317 KOG0891 DNA-dependent protein 35.8 4.8E+02 0.01 38.1 14.9 202 882-1094 482-699 (2341)
318 KOG2056 Equilibrative nucleosi 35.3 2.1E+02 0.0046 33.0 9.6 74 921-994 53-137 (336)
319 smart00582 RPR domain present 35.1 2E+02 0.0044 27.6 8.5 78 924-1001 31-115 (121)
320 PF12243 CTK3: CTD kinase subu 34.9 4.9E+02 0.011 26.2 12.2 107 570-681 7-118 (139)
321 PF14726 RTTN_N: Rotatin, an a 34.5 2.9E+02 0.0062 26.1 8.8 58 502-560 3-60 (98)
322 KOG1293 Proteins containing ar 33.8 5.6E+02 0.012 32.1 13.2 110 882-996 421-534 (678)
323 PF12422 Condensin2nSMC: Conde 33.1 5.4E+02 0.012 26.2 12.1 28 1044-1071 120-147 (152)
324 KOG4500 Rho/Rac GTPase guanine 32.7 9.4E+02 0.02 28.8 15.0 69 925-994 315-389 (604)
325 KOG3818 DNA polymerase epsilon 32.4 97 0.0021 36.6 6.4 76 115-191 21-96 (525)
326 PF14676 FANCI_S2: FANCI solen 32.2 5.8E+02 0.012 26.2 13.8 117 944-1068 37-157 (158)
327 KOG1851 Uncharacterized conser 31.8 5.4E+02 0.012 35.6 13.5 95 976-1071 1498-1597(1710)
328 cd03571 ENTH_epsin ENTH domain 31.4 3.6E+02 0.0079 26.4 9.4 94 497-599 12-117 (123)
329 PF14631 FancD2: Fanconi anaem 30.5 1.1E+03 0.023 33.2 16.8 151 918-1076 428-587 (1426)
330 PF00514 Arm: Armadillo/beta-c 30.3 97 0.0021 23.6 4.3 28 967-994 13-40 (41)
331 COG5537 IRR1 Cohesin [Cell div 30.1 7.5E+02 0.016 30.8 13.2 162 885-1053 280-450 (740)
332 PF03392 OS-D: Insect pheromon 30.1 1.3E+02 0.0027 28.2 5.7 71 119-189 18-88 (95)
333 KOG4413 26S proteasome regulat 29.2 9.3E+02 0.02 27.7 14.3 131 938-1068 184-329 (524)
334 PF12422 Condensin2nSMC: Conde 29.1 6.2E+02 0.014 25.7 12.9 119 35-170 25-145 (152)
335 PF10151 DUF2359: Uncharacteri 29.1 8.7E+02 0.019 29.6 13.9 155 510-681 7-177 (469)
336 PF10025 DUF2267: Uncharacteri 29.0 5E+02 0.011 25.3 10.1 117 571-702 4-123 (125)
337 PF14631 FancD2: Fanconi anaem 28.9 1.1E+03 0.025 33.0 16.5 103 958-1062 427-533 (1426)
338 PF04858 TH1: TH1 protein; In 28.3 4.1E+02 0.009 33.3 11.3 135 501-636 379-533 (584)
339 PLN03205 ATR interacting prote 28.0 5.2E+02 0.011 30.4 11.0 153 922-1076 320-519 (652)
340 KOG0368 Acetyl-CoA carboxylase 28.0 1.2E+03 0.025 32.6 15.1 123 496-620 822-957 (2196)
341 PF12530 DUF3730: Protein of u 28.0 8.2E+02 0.018 26.7 19.2 105 946-1057 105-217 (234)
342 KOG2038 CAATT-binding transcri 27.8 6.7E+02 0.015 32.1 12.5 116 925-1044 304-423 (988)
343 PF14225 MOR2-PAG1_C: Cell mor 27.5 9E+02 0.02 27.0 14.3 152 916-1074 54-219 (262)
344 KOG2021 Nuclear mRNA export fa 27.4 1.4E+03 0.031 29.3 19.0 142 938-1089 206-376 (980)
345 COG5656 SXM1 Importin, protein 26.8 1.5E+03 0.032 29.2 16.6 164 922-1088 405-584 (970)
346 PF13764 E3_UbLigase_R4: E3 ub 26.7 7.6E+02 0.017 32.2 13.6 166 21-196 226-416 (802)
347 PF04869 Uso1_p115_head: Uso1 26.7 2E+02 0.0044 33.0 7.8 176 498-684 50-233 (312)
348 smart00273 ENTH Epsin N-termin 26.6 4.2E+02 0.0091 25.8 9.2 39 922-960 36-75 (127)
349 PF12726 SEN1_N: SEN1 N termin 26.4 7.7E+02 0.017 31.9 14.0 124 965-1088 119-259 (727)
350 PF10441 Urb2: Urb2/Npa2 famil 25.7 8.7E+02 0.019 26.2 17.2 178 902-1095 7-210 (223)
351 KOG3380 Actin-related protein 25.6 1.7E+02 0.0036 29.5 5.9 55 1052-1106 64-119 (152)
352 PF12397 U3snoRNP10: U3 small 25.4 2.8E+02 0.006 26.8 7.6 69 1002-1074 7-76 (121)
353 smart00185 ARM Armadillo/beta- 25.4 97 0.0021 23.0 3.5 27 1044-1070 13-39 (41)
354 cd07920 Pumilio Pumilio-family 25.2 1E+03 0.022 26.8 14.4 17 1052-1068 209-225 (322)
355 PF07159 DUF1394: Protein of u 24.5 2.4E+02 0.0052 32.2 7.7 87 534-626 46-139 (303)
356 KOG0889 Histone acetyltransfer 24.1 7.5E+02 0.016 37.3 13.5 111 932-1045 12-140 (3550)
357 PF06025 DUF913: Domain of Unk 24.1 8E+02 0.017 29.0 12.4 70 925-994 106-183 (379)
358 PF13925 Katanin_con80: con80 23.9 8E+02 0.017 25.2 11.3 44 921-964 65-108 (164)
359 PF12238 MSA-2c: Merozoite sur 23.6 9.4E+02 0.02 25.9 12.1 39 122-161 64-102 (205)
360 PF13925 Katanin_con80: con80 23.5 1.3E+02 0.0027 31.1 4.9 73 100-177 69-141 (164)
361 KOG2056 Equilibrative nucleosi 23.4 5.2E+02 0.011 29.9 10.1 43 552-597 40-82 (336)
362 PF05327 RRN3: RNA polymerase 23.3 1.5E+03 0.033 28.2 16.1 123 882-1010 31-171 (563)
363 KOG3723 PH domain protein Melt 22.7 1.5E+03 0.033 28.0 16.7 100 960-1064 149-258 (851)
364 KOG1851 Uncharacterized conser 22.1 7.5E+02 0.016 34.4 12.2 94 78-174 1500-1599(1710)
365 PF08713 DNA_alkylation: DNA a 22.1 6.8E+02 0.015 26.3 10.6 78 99-185 119-196 (213)
366 KOG1086 Cytosolic sorting prot 21.9 6.4E+02 0.014 30.0 10.3 87 532-618 47-141 (594)
367 KOG2434 RNA polymerase I trans 21.8 1.5E+03 0.031 27.9 13.7 76 935-1011 84-162 (500)
368 KOG3911 Nucleolar protein NOP5 21.7 9.3E+02 0.02 27.8 11.3 68 494-562 15-84 (378)
369 PF12922 Cnd1_N: non-SMC mitot 21.6 3.1E+02 0.0066 28.4 7.5 62 898-959 96-167 (171)
370 PF08349 DUF1722: Protein of u 21.6 7.3E+02 0.016 23.9 10.6 96 902-1000 10-105 (117)
371 smart00145 PI3Ka Phosphoinosit 21.3 4.7E+02 0.01 27.6 8.7 76 966-1048 44-119 (184)
372 PF12397 U3snoRNP10: U3 small 21.1 4.3E+02 0.0092 25.4 7.9 89 98-196 4-92 (121)
373 KOG1789 Endocytosis protein RM 20.9 6.4E+02 0.014 33.5 10.8 130 502-634 1740-1881(2235)
374 KOG1837 Uncharacterized conser 20.9 5.5E+02 0.012 35.5 10.7 76 923-998 1539-1614(1621)
375 COG5101 CRM1 Importin beta-rel 20.7 9.5E+02 0.021 30.1 11.7 172 897-1076 848-1034(1053)
376 KOG1848 Uncharacterized conser 20.7 1.1E+03 0.023 32.6 13.0 136 939-1075 856-1029(1610)
377 KOG2072 Translation initiation 20.0 1.5E+03 0.032 29.4 13.5 86 900-988 24-110 (988)
No 1
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=100.00 E-value=3.5e-42 Score=381.09 Aligned_cols=506 Identities=24% Similarity=0.354 Sum_probs=380.8
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHhc-
Q 001255 503 RVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI- 581 (1113)
Q Consensus 503 R~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ll~klg- 581 (1113)
..+|...|..+|..-.-.. .++..+...+.+.+.+.+-+.. |+++..++..+-+.+..|+..-+-.+|.|.|
T Consensus 2 k~~~~~~l~~~i~d~~~~~----~~~k~~~~~~~~~~~e~~~~~~---l~~~S~~~rt~~srls~w~~l~l~k~~~k~g~ 74 (516)
T KOG2956|consen 2 KREGIKNLNQIITDPNLCP----LEIKNIGDTLNRLLAEGNNTLV---LETISIFVKTHYSRLSNWLKLALGKLFAKKGA 74 (516)
T ss_pred cchhhhhhhhhhcccccCh----HHHHHHhhhHHHhhhcccceee---eehhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777888887644221 3567788888888888766543 3999999999888999999999999999998
Q ss_pred CCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccC---CCHHHHHHHHHHHHHHHhhhccCCCCCCChhhHHHHHHhH
Q 001255 582 DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKL 658 (1113)
Q Consensus 582 D~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~---knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 658 (1113)
+....+.+....+...+..+|++.+|+. ++.++.++ ..||.+...++|+...+.+|...+..+ +...++..+.++
T Consensus 75 ~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~s~-~t~~~~~s~rkm 152 (516)
T KOG2956|consen 75 EALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGTSP-NTKETKAAIRKM 152 (516)
T ss_pred HhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCCCC-CCCcchhhhhhc
Confidence 9999999999999999999999999999 99999886 479999999999999998875444433 346789999999
Q ss_pred ccccCC-CC-HHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhhhccCCCC
Q 001255 659 TPLVHD-KN-TKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSY 736 (1113)
Q Consensus 659 ~~~~~d-~n-~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l~~~~~~~~~~s~~ 736 (1113)
.+|+.| +. .-+-......|.++|..+ -..|...+..|++.+++...+.++. +..++. .+
T Consensus 153 ~~~~~d~~~~~l~~~~v~s~l~~~~~~n-~a~fss~~d~l~p~~rD~~~~~~~~--------------n~~~~~----~~ 213 (516)
T KOG2956|consen 153 FPWMFDPRIENLLTPHVESSLCSLFALN-NADFSSLFDLLNPEKRDWAYDSLQS--------------NGIDNG----SP 213 (516)
T ss_pred cccccCchhhccccHHHHHHHHHHHHHH-hhchHhhhhccChhhhhhHHHHHHh--------------hCcCCC----CC
Confidence 999988 22 233344455666666555 4468888888999999998655542 111110 00
Q ss_pred CCCCCC-CCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhhccccCCCcCCCc
Q 001255 737 DPSDVV-GTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSS 815 (1113)
Q Consensus 737 ~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~ 815 (1113)
++.... +..+...+... ...+.... .++-++...+.+. .
T Consensus 214 ~~~a~~e~~~~~~n~~~~-------------~~~~P~~~-------------~~~~~~~~~~~~~-------~------- 253 (516)
T KOG2956|consen 214 SPSAEKERFDSSNNKPSL-------------PLSPPEEE-------------KPGLGSTKVNPEE-------L------- 253 (516)
T ss_pred Cchhhhcccccccccccc-------------cCCChhhc-------------ccCCCccccCccc-------c-------
Confidence 000000 00000000000 00000000 0000000000000 0
Q ss_pred ccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChHHHHHHhhcCCCC
Q 001255 816 KTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDG 895 (1113)
Q Consensus 816 ~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~lL~~l~~~~~~ 895 (1113)
+++. +. -|. .... ...|....+. |+ ....|+.++|.++|++++++ +.
T Consensus 254 --~~~n-~~--------~~~--~~l~-----e~~~~~~~~~-----~~---------p~~~~~~~~v~~~l~~~~g~-e~ 300 (516)
T KOG2956|consen 254 --RLSN-ET--------ERL--SRLE-----EYSTDDSMDQ-----LT---------PNSVDQSALVADLLKEISGS-ER 300 (516)
T ss_pred --cccc-ch--------hhh--hhch-----hhccCcchhh-----CC---------CCCcchhHHHHHHHHhccCc-cc
Confidence 0000 00 000 0000 0000000000 11 11224556789999999888 33
Q ss_pred ChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHH
Q 001255 896 SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV 974 (1113)
Q Consensus 896 ~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D-~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~ 974 (1113)
.++|++||.+|..++.++.+.+|.++|++||..+++.|.| .+..++..||++|++||++++.+|.+|.+..+.++|++
T Consensus 301 -a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 301 -ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred -hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999 68889999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcC
Q 001255 975 TKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 1054 (1113)
Q Consensus 975 ~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D 1054 (1113)
.+|+.++|...|++++..++..+.|..|+.++.|.|.+.++++.+.||||++++++++..++|...+++++|+++++|+.
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S 459 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDS 459 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcC
Confidence 99999988888888777777777999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhh-hhhHhhhhcCChhhHhhHHHHHHhhhccccCCCCC
Q 001255 1055 QSADVRKTVVFCLVDIYIMLG-KAFLPYLERLNSTQLRLVTIYANRISQARTGTTID 1110 (1113)
Q Consensus 1055 ~~seVRkaAv~clv~i~~~lG-e~i~p~l~~L~~s~~kLl~~yi~R~~~~r~~~~~~ 1110 (1113)
..+.|||+||||||++|..+| ++|+|||..|+.+|++||++||+|+++.++|+++|
T Consensus 460 ~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s~~s~a~~~ 516 (516)
T KOG2956|consen 460 TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASSSSSGASSD 516 (516)
T ss_pred chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhcccCCCCCC
Confidence 999999999999999999999 79999999999999999999999999999999875
No 2
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.96 E-value=2.7e-29 Score=273.42 Aligned_cols=194 Identities=30% Similarity=0.550 Sum_probs=140.6
Q ss_pred ChhhhHHHhcCC--CChhHHHHHHHHhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhh
Q 001255 1 MQRVEGLVLGGA--ADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITV 78 (1113)
Q Consensus 1 ~~r~r~l~~gga--~~~~~f~~~Lk~l~~~l~~~l~dlRS~vv~~Ac~~l~~La~~L~~~f~~~a~~~lp~Ll~~~~~t~ 78 (1113)
|++||+++.||+ ..++.|+..|+.+..+|.+++.|+||+|+++||.+|..|+..+++.|+++++.++|+||+++++++
T Consensus 28 l~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~ 107 (228)
T PF12348_consen 28 LQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSK 107 (228)
T ss_dssp HHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---
T ss_pred HHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHcccc
Confidence 468999999994 345699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhhCC-Cccc-HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCC-Cchhhhhc--HHHHHHHHHHHh
Q 001255 79 LVIAESSDNCIKTMLRNCK-AVRV-LPRIADCAKNDRNAVLRARCCEYALLVLEHWP-DAPEIQRS--ADLYEDLIRCCV 153 (1113)
Q Consensus 79 kvi~~sa~~ai~~ii~~~~-~~r~-l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~-~~~~~~~~--~~~l~~~i~k~l 153 (1113)
++|.+++..||..|+++|+ .+++ ++.+..++ ++||+.+|..|++||..+++.|+ ....+.+. .+.++++|.+++
T Consensus 108 ~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l 186 (228)
T PF12348_consen 108 KFIREAANNALDAIIESCSYSPKILLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLL 186 (228)
T ss_dssp HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHC
Confidence 9999999999999999999 6788 55666555 89999999999999999999999 22245443 588999999999
Q ss_pred cCCChHHHHHHHHHHHHHHhhChHHHHHHHhcCCHHHHHHHh
Q 001255 154 ADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIIN 195 (1113)
Q Consensus 154 ~Da~~eVR~~AR~a~~~~~~~~p~~a~~ll~~Ld~~~~k~l~ 195 (1113)
+|++++||++||++||.|+++||++|+.+++.|||++||+||
T Consensus 187 ~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~le 228 (228)
T PF12348_consen 187 SDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKYLE 228 (228)
T ss_dssp TSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcccccCC
Confidence 999999999999999999999999999999999999999986
No 3
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=99.88 E-value=4.4e-22 Score=243.54 Aligned_cols=215 Identities=15% Similarity=0.206 Sum_probs=194.5
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 961 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~ 961 (1113)
.+.+..+|.+.+ |++|++||+++..++.+.+.+....+++.+..++.-+++|.|.+|...++.+|..|+..++..|.
T Consensus 255 ~~~l~t~~~s~~---WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 255 TKNLETEMLSKK---WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred ChHHHHhhhccc---hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 356778888876 79999999999999999884333445777777788889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCH-HHHHhh
Q 001255 962 DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ-EELMAQ 1040 (1113)
Q Consensus 962 ~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~-~~l~~~ 1040 (1113)
+|+..++|.||++++|.+.++++++..|++.|+..++..++++++..++.+++.+.+.+|..++.+.+..++. ......
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t 411 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKET 411 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988884 333456
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhHhhhhcCChhhHhhHHHHHHh
Q 001255 1041 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANR 1099 (1113)
Q Consensus 1041 L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe-~i~p~l~~L~~s~~kLl~~yi~R 1099 (1113)
+..++|++++..+|++.+||+||..|+.++|+++|+ .+.+||..+.+..++++.+.+++
T Consensus 412 ~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~~~~~~~E~~~p 471 (815)
T KOG1820|consen 412 VKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQDIKPKEEKLKP 471 (815)
T ss_pred HHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhhhhhccc
Confidence 889999999999999999999999999999999997 68899999987778888888887
No 4
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=99.86 E-value=7.3e-20 Score=224.18 Aligned_cols=526 Identities=15% Similarity=0.127 Sum_probs=335.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERIL 573 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll 573 (1113)
.+.|++||+|+||++.|..++++.+..++ ....+.++-.+...+.|+|++|+..++.+|..++..++..|.+|...++
T Consensus 261 ~~~s~~WK~R~Eale~l~~~l~e~~~~~~--~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~ 338 (815)
T KOG1820|consen 261 EMLSKKWKDRKEALEELVAILEEAKKEIV--KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVF 338 (815)
T ss_pred hhhccchHHHHHHHHHHHHHHhccccccc--cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhc
Confidence 46899999999999999999999772222 1345666677778899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCCChhhHHH
Q 001255 574 PHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKL 653 (1113)
Q Consensus 574 ~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~ 653 (1113)
|.||++++|.|+.+|+.+.+++++|.++++.+.+++.++.++. ++||+.|.+++.|+...+..+ ++.- .....++.
T Consensus 339 p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk-~knp~~k~~~~~~l~r~~~~~--~~~~-~~~~t~~~ 414 (815)
T KOG1820|consen 339 PSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALK-GKNPQIKGECLLLLDRKLRKL--GPKT-VEKETVKT 414 (815)
T ss_pred chHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHHhhc--CCcC-cchhhHHH
Confidence 9999999999999999999999999999999999999987775 699999999999998887754 2111 11145788
Q ss_pred HHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhhhccC
Q 001255 654 WLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLK 733 (1113)
Q Consensus 654 ~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l~~~~~~~~~~ 733 (1113)
+++.+++..+|++.+||+||..+++++|+++|.+.+...|.++-+...... ..++.|.. .+....++..
T Consensus 415 l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~~~~~~---~E~~~p~~-----~~~~~~~~~~--- 483 (815)
T KOG1820|consen 415 LVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQDIKPK---EEKLKPLL-----HFLAAPKEKS--- 483 (815)
T ss_pred HhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhh---hhhccccc-----cccccCCCcC---
Confidence 899999999999999999999999999999999888888877644311111 12222210 0111111100
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhhccccCCCcCC
Q 001255 734 SSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADV 813 (1113)
Q Consensus 734 s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~ 813 (1113)
+.+++.. .+. +.....+ .+.....+...........+.. ..+... .+. .+......+
T Consensus 484 ~a~~~~~------~~~-----~~~~~~~-~~~~~~~p~~~~a~vps~~ss~-~~~~~~------~~~-~~~~~~~~~--- 540 (815)
T KOG1820|consen 484 SAPDPQV------EKL-----KKVVKVG-LSNFSGLPKNSAASVPSKLSSA-NSSRKI------PEA-AEAPKLQLS--- 540 (815)
T ss_pred CCCCccc------ccc-----ceecccc-cccCCCCCCCccccCCCccccc-ccccCC------cch-hhccccccc---
Confidence 0111100 000 0000000 0000000000000000000000 000000 000 000000000
Q ss_pred CcccccCCCC---CCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChHHHHHHhh
Q 001255 814 SSKTKDLTGS---NTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMC 890 (1113)
Q Consensus 814 ~~~~~~~~~s---~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~lL~~l~ 890 (1113)
+ ..++.... ....|.+..|..|..+ +....++..+....
T Consensus 541 ~-~~~~~~~~~~r~~~p~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~ 582 (815)
T KOG1820|consen 541 L-KEQRVVLGTRRKVSPKTVVAPVDDKKE-------------------------------------PSKKFVPKSLAKSM 582 (815)
T ss_pred c-ccchhhhhhhhccCccccccchhhhhc-------------------------------------ccccccchhhhhcc
Confidence 0 00000000 0001111122211100 00011111222211
Q ss_pred cCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh----hhhHHHH
Q 001255 891 NGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV----MEDSVEI 966 (1113)
Q Consensus 891 ~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~----~~~~~~~ 966 (1113)
...++ +...++++.+........... ..++..++.++..++.+++.......+.++.....-.+.. .......
T Consensus 583 ~~~d~--~~~~~~~~~~~r~~~~~~~~~-~~~~~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~ 659 (815)
T KOG1820|consen 583 KLDDF--KQHTAKLEILQRAEAANSKEY-TSIQDLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLL 659 (815)
T ss_pred Cccch--hhhhhhhhhhhhhhccccccc-chHHhhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhc
Confidence 22222 455566666655444443333 4568888899999999999988888888888877654311 1122223
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHH
Q 001255 967 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 1046 (1113)
Q Consensus 967 ~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip 1046 (1113)
+.+.+..+.+..+..+++.-.........++.+....+.+...|..++-.++.+|+.+...++..-|...+.-. ..+-
T Consensus 660 ~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~--~~~~ 737 (815)
T KOG1820|consen 660 FREILDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREALELKEREIRSEELLVIKLLFSSEGTSILKSL--RVLN 737 (815)
T ss_pred cchhhHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhccccchhhHHHHhhhhheeeccCCcchhhhH--hhhh
Confidence 33555557888888888888888888888888877888889999888888888888887777766666554321 1122
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcCChhhHhhHHHHHHhhhc
Q 001255 1047 ALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQ 1102 (1113)
Q Consensus 1047 ~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L~~s~~kLl~~yi~R~~~ 1102 (1113)
.+.-...+.+..+|+.+..|++..+..+|+.+|++...+.+.+...++..+.+-..
T Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 738 IIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWKISILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred cccccccccchhhhhhhhcccccccccccchHHHHHHHhhHHHhhhHHHhcCcccc
Confidence 33444578999999999999999999999999999999999999999999877544
No 5
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.83 E-value=1.2e-19 Score=197.65 Aligned_cols=198 Identities=18% Similarity=0.281 Sum_probs=144.0
Q ss_pred hhHHHHHHHHHHHHHhcCC----chhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHH
Q 001255 897 PTSKHGALQQLIKASVAND----HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLL 972 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~----~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll 972 (1113)
|++|.+||..|..++..+. ...+.+.+..++..+...+.|.++.|...||.+|..|+..++..|++|++.++|.|+
T Consensus 21 W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll 100 (228)
T PF12348_consen 21 WEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLL 100 (228)
T ss_dssp HHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999999998881 222334455666788889999999999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHHHHhhcC-hhhH-HHHhhhhhccCChhHHHHHHHHHHHHHHhhC--HHHHHh--hhhhHHH
Q 001255 973 HVTKDAVPKVSNEAEHCLTVVLSQYD-PFRC-LSVIVPLLVTEDEKTLVTCINCLTKLVGRLS--QEELMA--QLPSFLP 1046 (1113)
Q Consensus 973 ~~~~Ds~~~Vr~aa~~~l~~l~~~~~-p~~~-l~~l~~~l~s~~~~~~~~al~~L~~lie~~~--~~~l~~--~L~~lip 1046 (1113)
++++|+++.|+++|..|+..|+..++ +.++ +.++..++.++++..+..|++++..+++.|+ ...+.. .++.+++
T Consensus 101 ~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~ 180 (228)
T PF12348_consen 101 KKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVK 180 (228)
T ss_dssp HGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHH
Confidence 99999999999999999999999999 5666 8999999999999999999999999999999 344433 3688999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcCChhhHhhHH
Q 001255 1047 ALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVT 1094 (1113)
Q Consensus 1047 ~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L~~s~~kLl~ 1094 (1113)
.+.+++.|.+++||++|..|++.+|.++|+.....+..|++..+|+|+
T Consensus 181 ~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~le 228 (228)
T PF12348_consen 181 ALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKYLE 228 (228)
T ss_dssp HHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcccccCC
Confidence 999999999999999999999999999999888888999999999875
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=8.2e-09 Score=127.84 Aligned_cols=396 Identities=18% Similarity=0.271 Sum_probs=261.1
Q ss_pred HHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcC--cchHHHHHHHHHHHHHHHh---hCcchHHHHHHHHHHHHHH
Q 001255 505 SAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDD--PHHKVAQAALSTLADIIPS---CRKPFESYMERILPHVFSR 579 (1113)
Q Consensus 505 eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~D--sn~kV~~~~L~~l~~l~~~---~~~~~~~~l~~ll~~ll~k 579 (1113)
++|+.|-++++..++.+. +.+..+++.-.....+ -+--+=+.+|+.|.-++.. +-+...++...+++.++..
T Consensus 225 ~~l~~l~El~e~~pk~l~---~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~ 301 (1075)
T KOG2171|consen 225 SALEALIELLESEPKLLR---PHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAM 301 (1075)
T ss_pred HHHHHHHHHHhhchHHHH---HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHh
Confidence 456666677777665433 5677777765555443 3334556777777766655 5455567999999999998
Q ss_pred hcCCc----------------hhhHHHHHHHHHHHHhhCCccchHHHHHHhhcc---CCCHHHHHHHHHHHHHHHhhhcc
Q 001255 580 LIDPK----------------ELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDE---QRSPKAKLAVIEFAISSLNKHAM 640 (1113)
Q Consensus 580 lgD~K----------------~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~---~knpkvk~~~L~~l~~~l~~~~~ 640 (1113)
+.|.- +..-..|..+|+.++-..++..+++.++..+.. ..+||-|-++|.=+....+..
T Consensus 302 mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc-- 379 (1075)
T KOG2171|consen 302 MTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGC-- 379 (1075)
T ss_pred cCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccc--
Confidence 85332 224558999999999999999999999988753 368999999888776433210
Q ss_pred CCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHH
Q 001255 641 NSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLM 720 (1113)
Q Consensus 641 ~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~ 720 (1113)
.-.-.+.+-..++.++..++|+.|.||-||+.+|+-|-..+. +.. +
T Consensus 380 ---~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~------------p~i---------------q---- 425 (1075)
T KOG2171|consen 380 ---SDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ------------PEI---------------Q---- 425 (1075)
T ss_pred ---HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc------------HHH---------------H----
Confidence 000002334455555667899999999999999998764321 111 1
Q ss_pred HHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhh
Q 001255 721 NYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKEN 800 (1113)
Q Consensus 721 ~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~ 800 (1113)
+++.++ .+
T Consensus 426 ---k~~~e~--------------l~------------------------------------------------------- 433 (1075)
T KOG2171|consen 426 ---KKHHER--------------LP------------------------------------------------------- 433 (1075)
T ss_pred ---HHHHHh--------------cc-------------------------------------------------------
Confidence 111111 00
Q ss_pred hhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCC
Q 001255 801 LYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGP 880 (1113)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 880 (1113)
T Consensus 434 -------------------------------------------------------------------------------- 433 (1075)
T KOG2171|consen 434 -------------------------------------------------------------------------------- 433 (1075)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
+.|+..+.+... ..+...|...|.++..+.....+.++++.|+..++..|.++ .+.|+++++..|..++.+.+..
T Consensus 434 --~aL~~~ld~~~~--~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 434 --PALIALLDSTQN--VRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred --HHHHHHhcccCc--hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence 000000000000 13344555566777777777778899999999666666665 5669999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhh----------ccCChhHHHHHHHHH
Q 001255 960 MEDSVEIVIEKLLHVTKD----AVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLL----------VTEDEKTLVTCINCL 1025 (1113)
Q Consensus 960 ~~~~~~~~l~~ll~~~~D----s~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l----------~s~~~~~~~~al~~L 1025 (1113)
|.+|++.++|.|.+.++. ....+|-...+|+..+....+-+++.+..-+.+ ...+.+.+-.-+-..
T Consensus 510 F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~w 589 (1075)
T KOG2171|consen 510 FIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFW 589 (1075)
T ss_pred hHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHH
Confidence 999999999999998863 346777888999999998877655444443333 234555555555666
Q ss_pred HHHHHhhCHHHHHhhhhhHHHHHHHHhc----------------------------CC-C-------HHHHHHHHHHHHH
Q 001255 1026 TKLVGRLSQEELMAQLPSFLPALFEAFG----------------------------NQ-S-------ADVRKTVVFCLVD 1069 (1113)
Q Consensus 1026 ~~lie~~~~~~l~~~L~~lip~l~~~l~----------------------------D~-~-------seVRkaAv~clv~ 1069 (1113)
+.+.+-+| +...+.|+.+||.+.+... |. . -+=...|-..|+.
T Consensus 590 armc~ilg-~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~ 668 (1075)
T KOG2171|consen 590 ARMCRILG-DDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGE 668 (1075)
T ss_pred HHHHHHhc-hhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHH
Confidence 67777777 5556889999999887632 11 1 1224456677787
Q ss_pred HHHHhhhhhHhhhhcCChhhHhhHHHH
Q 001255 1070 IYIMLGKAFLPYLERLNSTQLRLVTIY 1096 (1113)
Q Consensus 1070 i~~~lGe~i~p~l~~L~~s~~kLl~~y 1096 (1113)
+...+++.+.||+...-.-..-++..|
T Consensus 669 ~a~~lk~~F~pYve~v~~l~v~~l~f~ 695 (1075)
T KOG2171|consen 669 YAKELKEAFAPYVEQVVELMVPLLKFY 695 (1075)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHhh
Confidence 878888889999876544333334444
No 7
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.4e-12 Score=152.34 Aligned_cols=199 Identities=17% Similarity=0.195 Sum_probs=165.1
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHhchhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSS-VREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~-vr~~aL~~L~~L~~~~~~~~ 960 (1113)
+.+++.++-+... ..+|..|...+..+++........ =..++..|.+.+.|++.. .|+.++......+.++|..|
T Consensus 135 ~l~~l~~ll~~~~--~~~~~~aa~~~ag~v~g~~i~~~~--~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~ 210 (569)
T KOG1242|consen 135 VLELLLELLTSTK--IAERAGAAYGLAGLVNGLGIESLK--EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF 210 (569)
T ss_pred HHHHHHHHhcccc--HHHHhhhhHHHHHHHcCcHHhhhh--hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC
Confidence 3334444333332 478999999999998876654332 134577788888998777 56678888899999999999
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh---HHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHH
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR---CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL 1037 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~---~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l 1037 (1113)
++|+..++|.++.+++|..+.||++|..|++++..++++.. +++.+.+.+...+|+++..++++++.+.+ +.+.++
T Consensus 211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~-~ap~qL 289 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMAD-CAPKQL 289 (569)
T ss_pred CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH-hchHHH
Confidence 99999999999999999999999999999999999998875 55555566656699999999999997774 555888
Q ss_pred HhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhHhhhhcC
Q 001255 1038 MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERL 1085 (1113)
Q Consensus 1038 ~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe-~i~p~l~~L 1085 (1113)
..+++.++|.+.+-|+|++++||+++..||..+..++.+ +|.+|++.|
T Consensus 290 s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~L 338 (569)
T KOG1242|consen 290 SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTL 338 (569)
T ss_pred HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 889999999999999999999999999999999999996 899888765
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=4.9e-09 Score=129.78 Aligned_cols=413 Identities=19% Similarity=0.283 Sum_probs=264.9
Q ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCc----
Q 001255 529 EKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSV---- 604 (1113)
Q Consensus 529 ~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~---- 604 (1113)
.++.+.|..-.++.|.+.-.++|-+|..+....+..+.+|+..+++-+.+.|+|.-..||-.+..|+.++.+..+.
T Consensus 117 Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~ 196 (1075)
T KOG2171|consen 117 PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSE 196 (1075)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHH
Confidence 4566777777888888888999999999999999999999999999999999998888999999999999988752
Q ss_pred ----cchHHHHHHhhccC---CCHHHHHHHHHHHHHHHhhhccCCCCCCChhhHHHHHHhHcccc----C--CCCHHHHH
Q 001255 605 ----DSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLV----H--DKNTKLKE 671 (1113)
Q Consensus 605 ----~~~l~~l~~~~~~~---knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~----~--d~n~~VR~ 671 (1113)
..+++.++..+.+. .+-++-..+|+-+.+.+.. .+.-++..+..|++++ . +-+..+|.
T Consensus 197 ~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~---------~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~ 267 (1075)
T KOG2171|consen 197 VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLES---------EPKLLRPHLSQIIQFSLEIAKNKELENSIRH 267 (1075)
T ss_pred HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 23445454444321 3444456677777654431 1134566677776643 2 36789999
Q ss_pred HHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccc
Q 001255 672 AAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYA 751 (1113)
Q Consensus 672 aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~ 751 (1113)
.|..+|+.+.+. .+ .+.|....+.+. .+.-.++-..+ -.+ .+.
T Consensus 268 ~ALe~ivs~~e~-Ap----------------~~~k~~~~~~~~---lv~~~l~~mte---------~~~------D~e-- 310 (1075)
T KOG2171|consen 268 LALEFLVSLSEY-AP----------------AMCKKLALLGHT---LVPVLLAMMTE---------EED------DDE-- 310 (1075)
T ss_pred HHHHHHHHHHHh-hH----------------HHhhhchhhhcc---HHHHHHHhcCC---------ccc------chh--
Confidence 999999998753 11 111111111111 11112211000 000 000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCC
Q 001255 752 VASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFS 831 (1113)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 831 (1113)
+. + +++..++ +..
T Consensus 311 ------------------------w~-----------~----~d~~ded----------------------------~~~ 323 (1075)
T KOG2171|consen 311 ------------------------WS-----------N----EDDLDED----------------------------DEE 323 (1075)
T ss_pred ------------------------hc-----------c----ccccccc----------------------------ccc
Confidence 00 0 0000000 000
Q ss_pred CC-cccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 001255 832 TP-RIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKA 910 (1113)
Q Consensus 832 ~P-r~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~ 910 (1113)
+| +...... |-+ ++ ...+++ .=+.+-+.+..+....+ |++|++||-.|..
T Consensus 324 ~~~~~A~~~l-Drl-A~---~L~g~~---------------------v~p~~~~~l~~~l~S~~--w~~R~AaL~Als~- 374 (1075)
T KOG2171|consen 324 TPYRAAEQAL-DRL-AL---HLGGKQ---------------------VLPPLFEALEAMLQSTE--WKERHAALLALSV- 374 (1075)
T ss_pred CcHHHHHHHH-HHH-Hh---cCChhh---------------------ehHHHHHHHHHHhcCCC--HHHHHHHHHHHHH-
Confidence 00 0000000 000 00 000000 00122334444444443 8999999998775
Q ss_pred HhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHH-HHHHHHHHhCCCh-HHHHHHHHH
Q 001255 911 SVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEI-VIEKLLHVTKDAV-PKVSNEAEH 988 (1113)
Q Consensus 911 l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~-~l~~ll~~~~Ds~-~~Vr~aa~~ 988 (1113)
+-++-.....+++..|+..++..|.|..+.||-.||+.|+.|.+...+.+..+... ++|.|+..+.|.. ..|...|..
T Consensus 375 i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~ 454 (1075)
T KOG2171|consen 375 IAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAA 454 (1075)
T ss_pred HHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHH
Confidence 44555556667999999999999999999999999999999999999998876554 4455556665543 356667777
Q ss_pred HHHHHHhhcChhhHHHHhhhhhc-------cCChh-HHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCC----
Q 001255 989 CLTVVLSQYDPFRCLSVIVPLLV-------TEDEK-TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQS---- 1056 (1113)
Q Consensus 989 ~l~~l~~~~~p~~~l~~l~~~l~-------s~~~~-~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~---- 1056 (1113)
|+..+.+.|+.+.+-|||-++++ .+..+ .+-.++.-++.+++..+ +.+.++...+||.|...+.+.+
T Consensus 455 al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~ 533 (1075)
T KOG2171|consen 455 ALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDL 533 (1075)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhh
Confidence 78888888999999888877775 22222 33344566666665544 5556888999999999998766
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhhHhhhhc
Q 001255 1057 ADVRKTVVFCLVDIYIMLG-KAFLPYLER 1084 (1113)
Q Consensus 1057 seVRkaAv~clv~i~~~lG-e~i~p~l~~ 1084 (1113)
-++|-....|+..+-..+| ++|.|+...
T Consensus 534 r~LrgktmEcisli~~AVGke~F~~~a~e 562 (1075)
T KOG2171|consen 534 RELRGKTMECLSLIARAVGKEKFLPLAEE 562 (1075)
T ss_pred HHHHhhHHHHHHHHHHHhhhhhhhHhHHH
Confidence 5677788899999999999 578888654
No 9
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.6e-07 Score=110.57 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhC
Q 001255 897 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 976 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~ 976 (1113)
|.....+++-|. .+.+........++.++++.|.+.|-|+.+.||.++-.+|..+..-... +-+..++|.|+++++
T Consensus 268 WrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~Lld~l~ 343 (569)
T KOG1242|consen 268 WRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPTLLDALA 343 (569)
T ss_pred hhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhc
Confidence 666777776655 4444444455678999999999999999999999999999888764332 348889999999999
Q ss_pred CChHHHHHHHHHHHH-HHHhhc-Chh--hHHHHhhhhhccCChhHHHHHHHHHHHHHHhh-CHHHHHhhhhhHHHHHHHH
Q 001255 977 DAVPKVSNEAEHCLT-VVLSQY-DPF--RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRL-SQEELMAQLPSFLPALFEA 1051 (1113)
Q Consensus 977 Ds~~~Vr~aa~~~l~-~l~~~~-~p~--~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~-~~~~l~~~L~~lip~l~~~ 1051 (1113)
|+...+.++...... +++... +|. .++|+|...+...+..++..+....+.+..-+ .+..+.+.|+.++|++.+.
T Consensus 344 dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~ 423 (569)
T KOG1242|consen 344 DPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKEN 423 (569)
T ss_pred CcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHH
Confidence 998788777766664 333333 332 35555555554333344445555666666555 5678889999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhhh
Q 001255 1052 FGNQSADVRKTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1052 l~D~~seVRkaAv~clv~i~~~lGe 1076 (1113)
+.|..+|||.-+.+++-.+...+|+
T Consensus 424 ~~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 424 LDDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999996
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.06 E-value=6e-07 Score=108.39 Aligned_cols=433 Identities=20% Similarity=0.244 Sum_probs=260.2
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHH
Q 001255 496 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPH 575 (1113)
Q Consensus 496 ~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ 575 (1113)
.|+|=--|-=|...|-+-++.....+.. ....++++++.+.|.|.|.-|.+.|..+|+.|+..-+ +.++..++-.
T Consensus 15 tssDKDfRfMAtsDLm~eLqkdsi~Ld~--dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvk---e~~le~~ve~ 89 (1233)
T KOG1824|consen 15 TSSDKDFRFMATSDLMTELQKDSIKLDD--DSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVK---EDQLETIVEN 89 (1233)
T ss_pred cCCCcchhhhhHHHHHHHHHhhhhhccc--cchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhch---HHHHHHHHHH
Confidence 3444334555555555555444222211 2346899999999999999999999999999996544 7888888888
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhhCCc-------cchHHHHHHhhc----cCC-CHHHHHHHHHHHHHHHhhhccCCC
Q 001255 576 VFSRLIDPKELVRQPCSTTLDIVSKTYSV-------DSLLPALLRSLD----EQR-SPKAKLAVIEFAISSLNKHAMNSE 643 (1113)
Q Consensus 576 ll~klgD~K~~vr~~a~~~L~~i~e~~~~-------~~~l~~l~~~~~----~~k-npkvk~~~L~~l~~~l~~~~~~~~ 643 (1113)
|..+|--.|++.|....-+|..+...++| ..+++.+...+. .+. .--+|.++|+-+...+.+|+
T Consensus 90 L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g---- 165 (1233)
T KOG1824|consen 90 LCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG---- 165 (1233)
T ss_pred HhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc----
Confidence 88888777888999766666666555554 223333333222 111 23499999999999888762
Q ss_pred CCCChhhHHHHHHh-HccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHH
Q 001255 644 GSGNLGILKLWLAK-LTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNY 722 (1113)
Q Consensus 644 ~~~~~~~~~~~l~~-l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~ 722 (1113)
++.. +....+.+ +.+-+.-.-..|||.|+.+|+.+-. +++..+... + ++ +
T Consensus 166 ~ll~--~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~-~~~~~ly~~-----------l---i~------------~ 216 (1233)
T KOG1824|consen 166 TLLP--NFHLSILKCLLPQLQSPRLAVRKKAITALGHLAS-SCNRDLYVE-----------L---IE------------H 216 (1233)
T ss_pred ccCc--chHHHHHHHHhhcccChHHHHHHHHHHHHHHHHH-hcCHHHHHH-----------H---HH------------H
Confidence 2221 12333333 3334555678999999999998874 333311111 1 11 1
Q ss_pred HHhhhhhhccCCCCCCCCCCCCCC-ccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhh
Q 001255 723 LQSKKERQRLKSSYDPSDVVGTSS-EEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENL 801 (1113)
Q Consensus 723 l~~~~~~~~~~s~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~ 801 (1113)
+-..-. .++ .++ .+.+
T Consensus 217 Ll~~L~------~~~------q~~~~rt~--------------------------------------------------- 233 (1233)
T KOG1824|consen 217 LLKGLS------NRT------QMSATRTY--------------------------------------------------- 233 (1233)
T ss_pred HHhccC------CCC------chHHHHHH---------------------------------------------------
Confidence 111000 000 000 0000
Q ss_pred hhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCC
Q 001255 802 YQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPS 881 (1113)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 881 (1113)
+|.... .-+..+ -|.+ .|.+ -.
T Consensus 234 Iq~l~~--------i~r~ag-----------~r~~-------------------------------------~h~~--~i 255 (1233)
T KOG1824|consen 234 IQCLAA--------ICRQAG-----------HRFG-------------------------------------SHLD--KI 255 (1233)
T ss_pred HHHHHH--------HHHHhc-----------chhh-------------------------------------cccc--hh
Confidence 000000 000000 0000 0000 00
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHh-cC------------------------
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVL-DD------------------------ 936 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L-~D------------------------ 936 (1113)
++-+.+-....++...+-|..-|+.+..++.....++ .++..+++..++..+ .|
T Consensus 256 vp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei-~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~ 334 (1233)
T KOG1824|consen 256 VPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEI-LPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQ 334 (1233)
T ss_pred hHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhh-cccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchh
Confidence 1111111100011102456666666666665554322 234444444444433 01
Q ss_pred ---------CCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-------
Q 001255 937 ---------ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF------- 1000 (1113)
Q Consensus 937 ---------~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~------- 1000 (1113)
-...||..|+++|..+...-...+..|...+-|.++..++|....|+.....+...+..++++.
T Consensus 335 ~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~ 414 (1233)
T KOG1824|consen 335 DDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADN 414 (1233)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCc
Confidence 1256999999999999887666677888899999999999999999999999999888776542
Q ss_pred --------------------hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHH--
Q 001255 1001 --------------------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSAD-- 1058 (1113)
Q Consensus 1001 --------------------~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~se-- 1058 (1113)
.+++.|...++++..+++..|+.+|+.++..++ +.+.++++.++|++.-.++|.++.
T Consensus 415 d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp-~~l~~~~~slvpgI~~~l~DkSsss~ 493 (1233)
T KOG1824|consen 415 DAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLP-GALAQHIPSLVPGIIYSLNDKSSSSN 493 (1233)
T ss_pred hhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCc-chhhhcccccchhhhhhcCCccchHH
Confidence 255666666777888899999999999997765 788899999999999999997654
Q ss_pred HHHHHHHHHHHHHHHhh-hhhHhhhhcCChhh
Q 001255 1059 VRKTVVFCLVDIYIMLG-KAFLPYLERLNSTQ 1089 (1113)
Q Consensus 1059 VRkaAv~clv~i~~~lG-e~i~p~l~~L~~s~ 1089 (1113)
.++-+.-++-.+..-.| +.|.||++.|.+--
T Consensus 494 ~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v 525 (1233)
T KOG1824|consen 494 LKIDALVFLYSALISHPPEVFHPHLSALSPPV 525 (1233)
T ss_pred HHHHHHHHHHHHHhcCChhhcccchhhhhhHH
Confidence 34444443333333333 58999999987543
No 11
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=7.2e-08 Score=112.45 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=146.8
Q ss_pred hhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch-hhhhhHHHHHHHHHHHHh
Q 001255 897 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK-DVMEDSVEIVIEKLLHVT 975 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~-~~~~~~~~~~l~~ll~~~ 975 (1113)
|++|.++.-.|..+..... ....+++.+|...|+..|.|+.+-||..+|.+|....+..- ..-..|+..+|..++..+
T Consensus 407 W~vrEagvLAlGAIAEGcM-~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l 485 (885)
T KOG2023|consen 407 WKVREAGVLALGAIAEGCM-QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL 485 (885)
T ss_pred hhhhhhhHHHHHHHHHHHh-hhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH
Confidence 9999999999887665543 23347899999999999999999999999999888666432 123478999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhcc-----CChhHHH--HHHHHHHHHHHhhCHHHHH-hhhhhHHHH
Q 001255 976 KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT-----EDEKTLV--TCINCLTKLVGRLSQEELM-AQLPSFLPA 1047 (1113)
Q Consensus 976 ~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s-----~~~~~~~--~al~~L~~lie~~~~~~l~-~~L~~lip~ 1047 (1113)
-|+++.|.+||-.+..++-+.... .++|++-+++++ ++|+.+- --.+-++.+++..|..-=. ..+..+||.
T Consensus 486 lD~NK~VQEAAcsAfAtleE~A~~-eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPP 564 (885)
T KOG2023|consen 486 LDSNKKVQEAACSAFATLEEEAGE-ELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPP 564 (885)
T ss_pred hcccHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccH
Confidence 999999999999999999988666 477787777763 3343211 1145566777666532111 236778888
Q ss_pred HHHH---hcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcCChhhHhhHHH
Q 001255 1048 LFEA---FGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTI 1095 (1113)
Q Consensus 1048 l~~~---l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L~~s~~kLl~~ 1095 (1113)
|++- +.|.|.++=- =..|+..+-..+|+.|.||....-.--.++|+-
T Consensus 565 Li~KW~~lsd~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~ 614 (885)
T KOG2023|consen 565 LIEKWELLSDSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQK 614 (885)
T ss_pred HHHHHHhcCcccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHH
Confidence 8865 4588877754 468999999999999999987766566666663
No 12
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=4.6e-09 Score=113.57 Aligned_cols=157 Identities=13% Similarity=0.190 Sum_probs=140.2
Q ss_pred HHHHHHHHhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHhhhC
Q 001255 17 CFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNC 96 (1113)
Q Consensus 17 ~f~~~Lk~l~~~l~~~l~dlRS~vv~~Ac~~l~~La~~L~~~f~~~a~~~lp~Ll~~~~~t~kvi~~sa~~ai~~ii~~~ 96 (1113)
.+...|++++-.+.+.++++||+|++.||.|++.|+..+.++++...+.++-.|+.+...+|.+|.+.+..||.+|+.|+
T Consensus 122 ~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v 201 (334)
T KOG2933|consen 122 SLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV 201 (334)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc
Confidence 46677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 001255 97 KAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKT 174 (1113)
Q Consensus 97 ~~~r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~~~ 174 (1113)
...++++.|...+ .+.++.+|+..+.++-.+..+-+..+..+.....+...+..-..|-=|++|+.||-.+......
T Consensus 202 tp~~~L~~L~~~~-~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v 278 (334)
T KOG2933|consen 202 TPQKLLRKLIPIL-QHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKEV 278 (334)
T ss_pred ChHHHHHHHHHHH-hhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHHHH
Confidence 9999999999887 6899999999988887777777654445667778888888889999999999998877665554
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.86 E-value=0.00084 Score=82.19 Aligned_cols=427 Identities=15% Similarity=0.221 Sum_probs=255.3
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCch----hHHHHhHHHHHHHHHHhh--cCcchHHHHHHHHHHHHHHHhhCcchHHH
Q 001255 495 SPSSDWCARVSAFNYLRSLLQQGPKGI----QEVIQNFEKVMKLFFQHL--DDPHHKVAQAALSTLADIIPSCRKPFESY 568 (1113)
Q Consensus 495 ~~s~nWkeR~eal~~L~~~l~~~~~~~----~~v~~~l~~l~~~l~~~l--~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~ 568 (1113)
-++.=+|.--|||.-.+++++--.+.. -.+.+..+.+.+.-.++| +|...+|=-.++.+++.++..+|+.+...
T Consensus 529 V~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~e 608 (1233)
T KOG1824|consen 529 VGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNE 608 (1233)
T ss_pred hcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 357778999999999898886322111 112356777887766665 58999999999999999999999888999
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhh---CCccchHHHHHHhhccC--C-CHHHHHHHHHHHHHHHhhhccCC
Q 001255 569 MERILPHVFSRLIDPKELVRQPCSTTLDIVSKT---YSVDSLLPALLRSLDEQ--R-SPKAKLAVIEFAISSLNKHAMNS 642 (1113)
Q Consensus 569 l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~---~~~~~~l~~l~~~~~~~--k-npkvk~~~L~~l~~~l~~~~~~~ 642 (1113)
+..+|+-+++||| .+..|-.|.+||+.|..+ +....++..+++.+.+. | +-+.|.+.|.++...+..|.
T Consensus 609 L~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~--- 683 (1233)
T KOG1824|consen 609 LPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYS--- 683 (1233)
T ss_pred hHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 9999999999999 555899999999999975 44444555555554332 3 35789888888876665441
Q ss_pred CCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhh--hchhhHHHHH
Q 001255 643 EGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQ--YTPRIEVDLM 720 (1113)
Q Consensus 643 ~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~--~~~~~~~~l~ 720 (1113)
.. .....+...+..+-.++.+..-.|-..|..+|..++... +..+.. ......+.+.+.++- ++......+.
T Consensus 684 ~~-~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~-ps~l~~----~~~~iL~~ii~ll~Spllqg~al~~~l 757 (1233)
T KOG1824|consen 684 DS-IPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQ-PSSLLK----ISNPILDEIIRLLRSPLLQGGALSALL 757 (1233)
T ss_pred cc-ccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc-cHHHHH----HhhhhHHHHHHHhhCccccchHHHHHH
Confidence 11 223445666777888888888888888888888887432 221211 111222333333321 1111111112
Q ss_pred HHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhh
Q 001255 721 NYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKEN 800 (1113)
Q Consensus 721 ~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~ 800 (1113)
+|.+---.. . .| .-.|. +-..
T Consensus 758 ~~f~alV~t-----~--------~~-~l~y~---------------------------------------------~l~s 778 (1233)
T KOG1824|consen 758 LFFQALVIT-----K--------EP-DLDYI---------------------------------------------SLLS 778 (1233)
T ss_pred HHHHHHHhc-----C--------CC-CccHH---------------------------------------------HHHH
Confidence 221110000 0 00 00000 0000
Q ss_pred hhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCC
Q 001255 801 LYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGP 880 (1113)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 880 (1113)
. ...|..+.
T Consensus 779 ~----------------------------lt~PV~~~------------------------------------------- 787 (1233)
T KOG1824|consen 779 L----------------------------LTAPVYEQ------------------------------------------- 787 (1233)
T ss_pred H----------------------------HcCCcccc-------------------------------------------
Confidence 0 00000000
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHH---HhcCCchhhHHhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKA---SVANDHSIWTKYFNQILTAVLEVLD--DADSSVREVALSLINEMLKN 955 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~---l~~~~~~~~~~~f~~ll~~Ll~~L~--D~n~~vr~~aL~~L~~L~~~ 955 (1113)
+.+ -..+.|+..+..+ +...-. ++ -..+...|..-+. .++..++.-|+-.|++|-+.
T Consensus 788 -~~~-------------~l~kqa~~siA~cvA~Lt~~~~---~~-s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~ 849 (1233)
T KOG1824|consen 788 -VTD-------------GLHKQAYYSIAKCVAALTCACP---QK-SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRR 849 (1233)
T ss_pred -ccc-------------chhHHHHHHHHHHHHHHHHhcc---cc-chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccC
Confidence 000 0011122222221 111100 00 1111222333332 23555777777888777654
Q ss_pred chhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHH
Q 001255 956 QKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQE 1035 (1113)
Q Consensus 956 ~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~ 1035 (1113)
.... +..-+-..++++++.+...|+.||-.|+..+.-- +.+..+|.|+..+.+.-++.-+ -+.-|..++.....+
T Consensus 850 ~~~s---~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vg-nl~~yLpfil~qi~sqpk~QyL-LLhSlkevi~~~svd 924 (1233)
T KOG1824|consen 850 KDLS---PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVG-NLPKYLPFILEQIESQPKRQYL-LLHSLKEVIVSASVD 924 (1233)
T ss_pred CCCC---cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcC-chHhHHHHHHHHHhcchHhHHH-HHHHHHHHHHHhccc
Confidence 3321 1222333778999999999999999999987743 6667899999999876444322 133444555444555
Q ss_pred HHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcC
Q 001255 1036 ELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERL 1085 (1113)
Q Consensus 1036 ~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L 1085 (1113)
.+.+....|-..+.+.++..+-.+|.-.-.|+-.++..=++.+.|-|..+
T Consensus 925 ~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~ 974 (1233)
T KOG1824|consen 925 GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLL 974 (1233)
T ss_pred hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHH
Confidence 56667788888899999999999999999999988877778888888765
No 14
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=1.9e-06 Score=99.62 Aligned_cols=381 Identities=17% Similarity=0.213 Sum_probs=248.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHHHhhCcchHHHHHHH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLD-DPHHKVAQAALSTLADIIPSCRKPFESYMERI 572 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~-Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~l 572 (1113)
.+.++-+..||+|-.+|++++++....-+ ...+.++++.|.+.+. -+|.+--...|--+...+.+.|.+-..|+..+
T Consensus 8 ~ltdKlYekRKaaalelEk~Vk~l~~~~~--~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i 85 (675)
T KOG0212|consen 8 GLTDKLYEKRKAAALELEKLVKDLVNNND--YDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI 85 (675)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccCc--HHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence 46788999999999999999987432111 1467788886655543 34443333666666666677777777799999
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHhhC------CccchHHHHHHhhccC-CCHHHHHHHHHHHHHHHhhhccCCC-C
Q 001255 573 LPHVFSRLIDPKELVRQPCSTTLDIVSKTY------SVDSLLPALLRSLDEQ-RSPKAKLAVIEFAISSLNKHAMNSE-G 644 (1113)
Q Consensus 573 l~~ll~klgD~K~~vr~~a~~~L~~i~e~~------~~~~~l~~l~~~~~~~-knpkvk~~~L~~l~~~l~~~~~~~~-~ 644 (1113)
+|.++.+++|.--.||--|.+.|--++... -.+.+|+.+++...+. +|-+.-.++|.-+...+. ++.. .
T Consensus 86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIV---te~~~t 162 (675)
T KOG0212|consen 86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIV---TESAST 162 (675)
T ss_pred hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhc---cccccc
Confidence 999999999888889999999999988642 2456788888877665 566666777777665543 2111 1
Q ss_pred CCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 001255 645 SGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQ 724 (1113)
Q Consensus 645 ~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l~ 724 (1113)
| .+...++-+-.-+-+.|+.+|..-..-|-.|+.. +...|+. -++.+.|+ +-++|.
T Consensus 163 F----sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~----P~~~m~~------------yl~~~ldG----Lf~~Ls 218 (675)
T KOG0212|consen 163 F----SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV----PDLEMIS------------YLPSLLDG----LFNMLS 218 (675)
T ss_pred c----CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC----CcHHHHh------------cchHHHHH----HHHHhc
Confidence 2 2222332222223346777776655554444421 1111111 01100000 001110
Q ss_pred hhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhhc
Q 001255 725 SKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQN 804 (1113)
Q Consensus 725 ~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~ 804 (1113)
. ++ . | .
T Consensus 219 D-------------------~s------------------------------------------------~---e-V--- 224 (675)
T KOG0212|consen 219 D-------------------SS------------------------------------------------D---E-V--- 224 (675)
T ss_pred C-------------------Cc------------------------------------------------H---H-H---
Confidence 0 00 0 0 0
Q ss_pred cccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChHH
Q 001255 805 FETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQ 884 (1113)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~ 884 (1113)
|. . .| -.+.+
T Consensus 225 -----------------------------r~----~-----------------------------------~~--t~l~~ 234 (675)
T KOG0212|consen 225 -----------------------------RT----L-----------------------------------TD--TLLSE 234 (675)
T ss_pred -----------------------------HH----H-----------------------------------HH--HHHHH
Confidence 00 0 00 01344
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHH
Q 001255 885 ILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSV 964 (1113)
Q Consensus 885 lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~ 964 (1113)
.|+++..++.. + +++++...+..-+..+++-++..|+.+|+++++-.|..+-.|+
T Consensus 235 fL~eI~s~P~s--------~-----------------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~ 289 (675)
T KOG0212|consen 235 FLAEIRSSPSS--------M-----------------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYL 289 (675)
T ss_pred HHHHHhcCccc--------c-----------------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhh
Confidence 55555444321 0 3666677777777778888999999999999999898899999
Q ss_pred HHHHHHHHHHhCCChH-HHHHHHHHHHHHHHhhcC---------hhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCH
Q 001255 965 EIVIEKLLHVTKDAVP-KVSNEAEHCLTVVLSQYD---------PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ 1034 (1113)
Q Consensus 965 ~~~l~~ll~~~~Ds~~-~Vr~aa~~~l~~l~~~~~---------p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~ 1034 (1113)
..++..+|.++.|... .++..+...-..+...+. .-.++.++...+......++++|++|+..+..+.+.
T Consensus 290 s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 290 SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred hhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc
Confidence 9999999999988755 355554443333332222 225778888888888888999999999999988874
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001255 1035 EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1035 ~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~ 1073 (1113)
++-.+...+.+.+.+.+.|++.+|=-.+...+..+|.-
T Consensus 370 -ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 370 -QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred -hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 44478899999999999999999999999988887743
No 15
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=2.3e-07 Score=100.61 Aligned_cols=191 Identities=16% Similarity=0.280 Sum_probs=160.8
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
.+.+.|+.|++.+ |+...++|..|..+..-+. +.....+..+...+.+-+++.+..|-..|+-++..|+..+...+
T Consensus 89 al~~~l~~L~s~d---W~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 89 ALKQALKKLSSDD---WEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHhchHH---HHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788887776 8999999999887776555 45567788888899999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHH-Hh
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL-MA 1039 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l-~~ 1039 (1113)
....+.++..|+.+-.+.+..||++|+.+|.+++.+..|.++++-|.|+++..+..++.-+-.+.-..+.+++-..+ ..
T Consensus 165 ~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~ 244 (334)
T KOG2933|consen 165 DQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQ 244 (334)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhH
Confidence 88999999999999999999999999999999999999999999999999888887777665566666767763332 23
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1040 QLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1040 ~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
..-++++.+.+.+.|+-+++|++|.+.+...-.++.
T Consensus 245 ~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~~ 280 (334)
T KOG2933|consen 245 GSCDLSRAAQEQGSDKLPELREAARFVRLELKEVLK 280 (334)
T ss_pred hHHHHHHHHHhhhcccccccccchhHHHHhHHHHHH
Confidence 345778999999999999999999998877765554
No 16
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.0015 Score=77.53 Aligned_cols=456 Identities=16% Similarity=0.221 Sum_probs=262.4
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhC-cchHHH
Q 001255 490 LSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCR-KPFESY 568 (1113)
Q Consensus 490 l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~-~~~~~~ 568 (1113)
|.+ .+.+.+|++|-+|+-.|..|-+..-.. .-+.|.+|+..|...|.|.-.-|=+...=||..+..-.- ..-..|
T Consensus 398 Lk~-~L~~~~W~vrEagvLAlGAIAEGcM~g---~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~ 473 (885)
T KOG2023|consen 398 LKE-HLSSEEWKVREAGVLALGAIAEGCMQG---FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEY 473 (885)
T ss_pred HHH-HcCcchhhhhhhhHHHHHHHHHHHhhh---cccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhh
Confidence 444 578899999999999999999875432 227899999999999999888787888778887776432 233589
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccc------hHHHHHHhhcc--CCCHHHHHHHHHHHHHHHhhhcc
Q 001255 569 MERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDS------LLPALLRSLDE--QRSPKAKLAVIEFAISSLNKHAM 640 (1113)
Q Consensus 569 l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~------~l~~l~~~~~~--~knpkvk~~~L~~l~~~l~~~~~ 640 (1113)
+.-+|..|+.++-|.+.-|+++|..+..++-|..+.+. ++..|+..... +||-.+--.++.-+++.+-. +.
T Consensus 474 f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~-~L 552 (885)
T KOG2023|consen 474 FKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH-AL 552 (885)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH-hc
Confidence 99999999999999999999999999999988655543 33444433322 36777777777666655421 11
Q ss_pred CCCCCCChhhHHHHHHhHcc-c--cCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhh-hchhhH
Q 001255 641 NSEGSGNLGILKLWLAKLTP-L--VHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQ-YTPRIE 716 (1113)
Q Consensus 641 ~~~~~~~~~~~~~~l~~l~~-~--~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~-~~~~~~ 716 (1113)
..+..+...++.++. | +.|...++ .-|+..+ ..+..+|+. +-|-..
T Consensus 553 -----n~~~YiqiLmPPLi~KW~~lsd~DKdL--------fPLLECl-----------------Ssia~AL~~gF~P~~~ 602 (885)
T KOG2023|consen 553 -----NKPAYIQILMPPLIEKWELLSDSDKDL--------FPLLECL-----------------SSIASALGVGFLPYAQ 602 (885)
T ss_pred -----CcHHHHHHhccHHHHHHHhcCcccchH--------HHHHHHH-----------------HHHHHHHhccccccCH
Confidence 112234555555554 4 45544433 1111111 111112211 111111
Q ss_pred HHH---HHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 001255 717 VDL---MNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAM 793 (1113)
Q Consensus 717 ~~l---~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 793 (1113)
... ...+++.-+-. .....++ +...| +
T Consensus 603 ~Vy~Rc~~il~~t~q~~-~~~~~~~--~~~~p-------------------------d---------------------- 632 (885)
T KOG2023|consen 603 PVYQRCFRILQKTLQLL-AKVQQDP--TVEAP-------------------------D---------------------- 632 (885)
T ss_pred HHHHHHHHHHHHHHHHH-HhccCCc--cccCC-------------------------C----------------------
Confidence 110 11222211100 0000000 00000 0
Q ss_pred CchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccc-cccccccccccccCCCCCCCCccccCCCCCccccc
Q 001255 794 SDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDI-NGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKT 872 (1113)
Q Consensus 794 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1113)
+ +|..-..|+ ++..+++. .....+
T Consensus 633 ----k------------------------------dfiI~sLDL~SGLaegLg---------~~ie~L------------ 657 (885)
T KOG2023|consen 633 ----K------------------------------DFIIVSLDLLSGLAEGLG---------SHIEPL------------ 657 (885)
T ss_pred ----c------------------------------ceEEEeHHHHhHHHHHhh---------hchHHH------------
Confidence 0 000000000 00000000 000000
Q ss_pred CCcCcCCCChHHH-HHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001255 873 NSLTDAGPSIPQI-LHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINE 951 (1113)
Q Consensus 873 ~~~~d~~~~i~~l-L~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~ 951 (1113)
...+. +.++ +.=+.|. .+++|..+..-|..+.+.. ++-..++..+++..|..-+.-.+..+.-.|+..+++
T Consensus 658 ---va~sn-l~~lll~C~~D~---~peVRQS~FALLGDltk~c-~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGe 729 (885)
T KOG2023|consen 658 ---VAQSN-LLDLLLQCLQDE---VPEVRQSAFALLGDLTKAC-FEHVIPNLADFLPILGANLNPENISVCNNAIWAIGE 729 (885)
T ss_pred ---hhhcc-HHHHHHHHhccC---ChHHHHHHHHHHHHHHHHH-HHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHH
Confidence 00011 2222 2223222 3689999998887777664 333345666766666655544466688899999999
Q ss_pred HHHhchhhhhhHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHhhcChhhHHHHh----hhhhcc----CChhHHHHH
Q 001255 952 MLKNQKDVMEDSVEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVLSQYDPFRCLSVI----VPLLVT----EDEKTLVTC 1021 (1113)
Q Consensus 952 L~~~~~~~~~~~~~~~l~~ll~~~~--Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l----~~~l~s----~~~~~~~~a 1021 (1113)
|+-.+|..+.+|+..++..|+..+. ...+.+.+-..-++..+. .+.|+.+-|.+ .||..+ ++...+-.|
T Consensus 730 ia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg-~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sA 808 (885)
T KOG2023|consen 730 IALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLG-YICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESA 808 (885)
T ss_pred HHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhh-ccCHHhcchhHHHHHHHHHHHhcccccchhHHHH
Confidence 9999999999999999999998765 334445444444444433 34555444433 344332 233445566
Q ss_pred HHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhH-hhhhcCChhhHhhHHHH
Q 001255 1022 INCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFL-PYLERLNSTQLRLVTIY 1096 (1113)
Q Consensus 1022 l~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~-p~l~~L~~s~~kLl~~y 1096 (1113)
+.-+..++.--+...+ ..+.-+. -.+..+.+...++|..-.+.|-.+-..+|+.=| .++..++|.-+.-|..+
T Consensus 809 FrG~c~mi~vNp~~vv-~~~~f~c-~aiAsw~np~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf~P~~~erl~a~ 882 (885)
T KOG2023|consen 809 FRGLCNMINVNPSGVV-SSFIFIC-DAIASWSNPEDDLRDEFYKILQGFKNQVGKINWQRFSEQFPPPLKERLQAF 882 (885)
T ss_pred HHHHHHheeeCchhhh-hhhHHHH-HHHhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCChhHHHHHHHH
Confidence 7777788855554444 3344444 344566688899999999999999999998655 57788887766555544
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.64 E-value=5.8e-06 Score=107.46 Aligned_cols=119 Identities=20% Similarity=0.274 Sum_probs=87.4
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHH
Q 001255 532 MKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPAL 611 (1113)
Q Consensus 532 ~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l 611 (1113)
++.|..+|.|.+..|=..++++|..+. -...++.|...|.|....||..|.++|..+.+..+... .|
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~---~L 689 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAP---AL 689 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchH---HH
Confidence 445677788999999999999998763 23467788888899999999999999988877665543 34
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHH
Q 001255 612 LRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISV 680 (1113)
Q Consensus 612 ~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l 680 (1113)
...+. ..+|.||..++.+|.. +. . ... ..++.++.|+++.||.+|...|+.+
T Consensus 690 ~~~L~-~~d~~VR~~A~~aL~~-~~---~--------~~~----~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 690 RDHLG-SPDPVVRAAALDVLRA-LR---A--------GDA----ALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred HHHhc-CCCHHHHHHHHHHHHh-hc---c--------CCH----HHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 44443 4789999999888763 21 0 111 1345578899999999998877763
No 18
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=6.2e-05 Score=87.39 Aligned_cols=395 Identities=16% Similarity=0.164 Sum_probs=240.8
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHH
Q 001255 495 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILP 574 (1113)
Q Consensus 495 ~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~ 574 (1113)
.-+.+-..|+.||.++....-....... +-+..++.=....|+|++.+|---+.|.+-.++...+..+-.|-..+.-
T Consensus 52 a~s~~~n~rkGgLiGlAA~~iaLg~~~~---~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFd 128 (675)
T KOG0212|consen 52 AYSPHANMRKGGLIGLAAVAIALGIKDA---GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFD 128 (675)
T ss_pred ccCcccccccchHHHHHHHHHHhccccH---HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHH
Confidence 3566667888999999876433222111 2455666666778999999999999999999999998888888777766
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHH-h-------hCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCC
Q 001255 575 HVFSRLIDPKELVRQPCSTTLDIVS-K-------TYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSG 646 (1113)
Q Consensus 575 ~ll~klgD~K~~vr~~a~~~L~~i~-e-------~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~ 646 (1113)
.+-+-.+|.-..||..+. .|+... + .|+.+.+++-|-.-+- ..||-+|+-++.|+.- +. .+..-.+.
T Consensus 129 vL~klsaDsd~~V~~~ae-LLdRLikdIVte~~~tFsL~~~ipLL~eriy-~~n~~tR~flv~Wl~~-Ld--s~P~~~m~ 203 (675)
T KOG0212|consen 129 VLCKLSADSDQNVRGGAE-LLDRLIKDIVTESASTFSLPEFIPLLRERIY-VINPMTRQFLVSWLYV-LD--SVPDLEMI 203 (675)
T ss_pred HHHHHhcCCccccccHHH-HHHHHHHHhccccccccCHHHHHHHHHHHHh-cCCchHHHHHHHHHHH-Hh--cCCcHHHH
Confidence 666666899998988764 344333 1 3666666665544332 2699999999999964 32 11111111
Q ss_pred ChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHH-hh---hchhhHH----H
Q 001255 647 NLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRAL-KQ---YTPRIEV----D 718 (1113)
Q Consensus 647 ~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al-~~---~~~~~~~----~ 718 (1113)
..+-..+.-++..+.|.+.+||..+..+|..+..-....+-.+ ++.+++ ..+ +. ..|.++. -
T Consensus 204 --~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~-------d~~~~i-~vlv~~l~ss~~~iq~~al~W 273 (675)
T KOG0212|consen 204 --SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM-------DYDDMI-NVLVPHLQSSEPEIQLKALTW 273 (675)
T ss_pred --hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc-------Ccccch-hhccccccCCcHHHHHHHHHH
Confidence 2234456677788999999999999998877553222111110 111111 111 11 1111111 1
Q ss_pred HHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhh
Q 001255 719 LMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETK 798 (1113)
Q Consensus 719 l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 798 (1113)
+.+|++-.+.. ..+ + .++.=. + . -+.. +++ +.++.
T Consensus 274 i~efV~i~g~~-------------~l~----~--~s~il~--~-i-Lpc~-s~~---------------------e~~~i 308 (675)
T KOG0212|consen 274 IQEFVKIPGRD-------------LLL----Y--LSGILT--A-I-LPCL-SDT---------------------EEMSI 308 (675)
T ss_pred HHHHhcCCCcc-------------hhh----h--hhhhhh--h-c-ccCC-CCC---------------------ccccH
Confidence 12343321110 000 0 000000 0 0 0000 000 00000
Q ss_pred hhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcC
Q 001255 799 ENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDA 878 (1113)
Q Consensus 799 e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 878 (1113)
-+..+.... .-++ -++.++.. + + -|.
T Consensus 309 ~~~a~~~n~---------------~l~~--l~s~~~~~------------------~---~----------------id~ 334 (675)
T KOG0212|consen 309 KEYAQMVNG---------------LLLK--LVSSERLK------------------E---E----------------IDY 334 (675)
T ss_pred HHHHHHHHH---------------HHHH--HHhhhhhc------------------c---c----------------cch
Confidence 000000000 0000 00000000 0 0 022
Q ss_pred CCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh
Q 001255 879 GPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD 958 (1113)
Q Consensus 879 ~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~ 958 (1113)
+..+.-+.+.+.+.++ +.|.++|+.+.-+........+ .+.+.++..|+..|.|.+-.|..++|.+|..||....+
T Consensus 335 ~~ii~vl~~~l~~~~~---~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 335 GSIIEVLTKYLSDDRE---ETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHHhhcchH---HHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 3346777888877764 7899999999887766655443 47788999999999999888999999999999997654
Q ss_pred hhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccC
Q 001255 959 VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTE 1013 (1113)
Q Consensus 959 ~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~ 1013 (1113)
. ....++..+++.+....+-+..-+.-.++.+|-.+.++++...++.++...
T Consensus 411 ~---~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~e 462 (675)
T KOG0212|consen 411 P---NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILERE 462 (675)
T ss_pred c---cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhcc
Confidence 3 346688888999998888899999999999999999999999999999764
No 19
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=0.00011 Score=93.56 Aligned_cols=385 Identities=16% Similarity=0.212 Sum_probs=250.3
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHH
Q 001255 496 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPH 575 (1113)
Q Consensus 496 ~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ 575 (1113)
-++-|.-|+-|--++..|.+++...++ +.+++|+.-|.|+=-||+.+|....-.|-..|++.-+...+.|+..++-.
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~---p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~e 1043 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLE---PYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDE 1043 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhh---hHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 478899999999999999998765454 78999999999988899999999999999999999888889999999999
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhhCCccchH-------HHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCCCh
Q 001255 576 VFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLL-------PALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNL 648 (1113)
Q Consensus 576 ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l-------~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~ 648 (1113)
|+..|++.-=-||+++.-||.-+...-+.+.+. .+++|.++|-|- -||.++=.++ ..+.+.-+-..+..+.
T Consensus 1044 LL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKE-sVR~aa~~~~-~~lsKl~vr~~d~~~~ 1121 (1702)
T KOG0915|consen 1044 LLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKE-SVREAADKAA-RALSKLCVRICDVTNG 1121 (1702)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHhhhcccCCc
Confidence 999999887669999888888777666666544 345566666541 2444332222 2233222211121222
Q ss_pred hhHHHHHHhHccccCC-----CCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHH
Q 001255 649 GILKLWLAKLTPLVHD-----KNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYL 723 (1113)
Q Consensus 649 ~~~~~~l~~l~~~~~d-----~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l 723 (1113)
-.-+..+.-+.+++-| +-.+||+.++..|..|-.+.|+. +.-++.. +.-.|-....+.+..+.+|+
T Consensus 1122 ~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~-lkP~~~~--------LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1122 AKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKE-LKPHFPK--------LIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred ccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhh-hcchhhH--------HHHHHHHHccccchHHHHHH
Confidence 2335556666676544 67899999999999999887552 2222211 11111111222222222332
Q ss_pred HhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhh
Q 001255 724 QSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQ 803 (1113)
Q Consensus 724 ~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~ 803 (1113)
--.- . +...|.
T Consensus 1193 s~r~----------------------------~--------------------------------------~~e~ea--- 1203 (1702)
T KOG0915|consen 1193 SLRL----------------------------I--------------------------------------NIETEA--- 1203 (1702)
T ss_pred HHhh----------------------------h--------------------------------------hhHHHH---
Confidence 1100 0 000000
Q ss_pred ccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChH
Q 001255 804 NFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIP 883 (1113)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~ 883 (1113)
++
T Consensus 1204 ------------------------------------------------------------------------------lD 1205 (1702)
T KOG0915|consen 1204 ------------------------------------------------------------------------------LD 1205 (1702)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhhhhh
Q 001255 884 QILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVMED 962 (1113)
Q Consensus 884 ~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~~~~~ 962 (1113)
.+-........ -++.|..+|+.-+. ..+.++.+.+.+.+.-+ +...+..+-.++..|....+..+.+
T Consensus 1206 t~R~s~akssp--------mmeTi~~ci~~iD~----~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP 1273 (1702)
T KOG0915|consen 1206 TLRASAAKSSP--------MMETINKCINYIDI----SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP 1273 (1702)
T ss_pred HHHHhhhcCCc--------HHHHHHHHHHhhhH----HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc
Confidence 00000000000 01122223322221 23556666677766544 5556777888999999999999999
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhh----hccCChhHHHHHHHHHHHHHHhhCHHHHH
Q 001255 963 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPL----LVTEDEKTLVTCINCLTKLVGRLSQEELM 1038 (1113)
Q Consensus 963 ~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~----l~s~~~~~~~~al~~L~~lie~~~~~~l~ 1038 (1113)
|..-++-.++-.++|....|+++...|+..++....++++.+++... +...+... ..+...+-. |..+..+.+.
T Consensus 1274 ~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~-siscatis~-Ian~s~e~Lk 1351 (1702)
T KOG0915|consen 1274 YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK-SISCATISN-IANYSQEMLK 1351 (1702)
T ss_pred chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc-chhHHHHHH-HHHhhHHHHH
Confidence 99999999999999999999999999999999999998876666433 33222221 222334445 6677789999
Q ss_pred hhhhhHHHHHHHHhcCC
Q 001255 1039 AQLPSFLPALFEAFGNQ 1055 (1113)
Q Consensus 1039 ~~L~~lip~l~~~l~D~ 1055 (1113)
.+-..++|.+.=++++.
T Consensus 1352 n~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1352 NYASAILPLIFLAMHEE 1368 (1702)
T ss_pred hhHHHHHHHHHHHHhHH
Confidence 99999999998888765
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=98.50 E-value=0.00087 Score=84.23 Aligned_cols=176 Identities=9% Similarity=0.020 Sum_probs=120.6
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcch
Q 001255 486 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF 565 (1113)
Q Consensus 486 ~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~ 565 (1113)
+.|+-+ .+.+.+=.+|++||..|-.++..+... ..++.-.++.+.-.|..+=.+..-.+..+ .+.-
T Consensus 34 ~~ELr~--~L~s~~~~~kk~alKkvIa~mt~G~Dv--------S~LF~dVvk~~~S~d~elKKLvYLYL~~y----a~~~ 99 (746)
T PTZ00429 34 GAELQN--DLNGTDSYRKKAAVKRIIANMTMGRDV--------SYLFVDVVKLAPSTDLELKKLVYLYVLST----ARLQ 99 (746)
T ss_pred HHHHHH--HHHCCCHHHHHHHHHHHHHHHHCCCCc--------hHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cccC
Confidence 456655 456778788999999999988877542 12233334455555555444443333333 2222
Q ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 001255 566 ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGS 645 (1113)
Q Consensus 566 ~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~ 645 (1113)
.+.+-..+..+.+-+.|..+.+|..|..+|..++..-=.+.++..|.+.+. .++|-||..+.-.+...+ ..+++-+
T Consensus 100 pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~-D~~pYVRKtAalai~Kly---~~~pelv 175 (746)
T PTZ00429 100 PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVA-DPDPYVRKTAAMGLGKLF---HDDMQLF 175 (746)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHH---hhCcccc
Confidence 345667788888888999999999999999988765555666677766664 488999998887776544 3333221
Q ss_pred CChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhh
Q 001255 646 GNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTH 683 (1113)
Q Consensus 646 ~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~ 683 (1113)
....|+..+..++.|+|+.|...|..+|..+...
T Consensus 176 ----~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 176 ----YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred ----cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 1234677788888999999999999999999754
No 21
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.47 E-value=0.00055 Score=81.55 Aligned_cols=168 Identities=21% Similarity=0.281 Sum_probs=126.6
Q ss_pred HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhh-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhc--
Q 001255 921 KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED-SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY-- 997 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~-~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~-- 997 (1113)
+++-.|...++.+|.++...||++|+.++..|+.-+...-+. -...+-.-|.+-+|.--++|.-....|+.+|+.+.
T Consensus 795 pylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 795 PYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred cchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccc
Confidence 456677777888999999999999999999999887654221 12223334557889888999999999999999876
Q ss_pred ----Ch-hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHH-HhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 998 ----DP-FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL-MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 998 ----~p-~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l-~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
|| ..+||-|+|+|+++..+.-.-|+++++.+..+-+ +-+ ...-..|.=.|+..+--.+.++|.+|++.+--|-
T Consensus 875 ~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadrgp-E~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 875 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGP-EYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA 953 (1172)
T ss_pred cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33 4599999999998877777789999999886544 222 1122233346666777788999999999999999
Q ss_pred HHhhh-hhH-hhhhcCChhh
Q 001255 1072 IMLGK-AFL-PYLERLNSTQ 1089 (1113)
Q Consensus 1072 ~~lGe-~i~-p~l~~L~~s~ 1089 (1113)
+.+|- ++. -.+.+|....
T Consensus 954 kaIGPqdVLatLlnnLkvqe 973 (1172)
T KOG0213|consen 954 KAIGPQDVLATLLNNLKVQE 973 (1172)
T ss_pred HhcCHHHHHHHHHhcchHHH
Confidence 99994 654 5778886443
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.39 E-value=0.00013 Score=89.76 Aligned_cols=163 Identities=20% Similarity=0.290 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhC
Q 001255 898 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 976 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~ 976 (1113)
..|..+|+-|..+..+ .++..++..|...+.+. +..++..++..|..++..... ..+.++..+++.+.
T Consensus 319 ~Ir~~~l~lL~~l~~~-------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~----~~~~~v~~l~~ll~ 387 (526)
T PF01602_consen 319 SIRKKALDLLYKLANE-------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP----DAEWYVDTLLKLLE 387 (526)
T ss_dssp HHHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS----SHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcccc-------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc----hHHHHHHHHHHhhh
Confidence 4567777776666543 46777888888888665 677898899999999985543 34445556666676
Q ss_pred CChHHHHHHHHHHHHHHHhhcChh--hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHh--hhhhHHHHHHHHh
Q 001255 977 DAVPKVSNEAEHCLTVVLSQYDPF--RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMA--QLPSFLPALFEAF 1052 (1113)
Q Consensus 977 Ds~~~Vr~aa~~~l~~l~~~~~p~--~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~--~L~~lip~l~~~l 1052 (1113)
.....+...+...+..++...+.. .++..+...+..-..+. ++....|++..++.. +.. ..++++..+...+
T Consensus 388 ~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~---~~~~~~wilGEy~~~-~~~~~~~~~~~~~l~~~~ 463 (526)
T PF01602_consen 388 ISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPE---ALAAAIWILGEYGEL-IENTESAPDILRSLIENF 463 (526)
T ss_dssp CTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHH---HHHHHHHHHHHHCHH-HTTTTHHHHHHHHHHHHH
T ss_pred hccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHH---HHHHHHhhhcccCCc-ccccccHHHHHHHHHHhh
Confidence 676778888888888888776543 46777777776533332 245556777777732 222 5778888999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1053 GNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1053 ~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
.+.+.+||.....++..++...+
T Consensus 464 ~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 464 IEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999887
No 23
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.33 E-value=3.5e-05 Score=88.01 Aligned_cols=207 Identities=18% Similarity=0.267 Sum_probs=156.7
Q ss_pred CHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcC-cchHHHHHHHHHHHHHHHhhCc
Q 001255 485 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDD-PHHKVAQAALSTLADIIPSCRK 563 (1113)
Q Consensus 485 ~~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~D-sn~kV~~~~L~~l~~l~~~~~~ 563 (1113)
-|.+.|.+ ..++-.-.+|++|+.+|..++.++....= .+.+++|...+...|.| .++..-.++|.+|.+..+.-..
T Consensus 287 ~v~~~l~~-~~g~e~a~~~k~alsel~~m~~e~sfsvW--eq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 287 LVADLLKE-ISGSERASERKEALSELPKMLCEGSFSVW--EQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred HHHHHHHh-ccCccchhHHHHHHHHHHHHHHccchhHH--HHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 34666664 44566889999999999999998865322 25788999999999999 7777778899999999999888
Q ss_pred chHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCC
Q 001255 564 PFESYMERILPHVFSRLIDP-KELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNS 642 (1113)
Q Consensus 564 ~~~~~l~~ll~~ll~klgD~-K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~ 642 (1113)
.|.++....+-.+++.--|. ++.++.++..|+..+....|...+....-.++. ..-| .-+.++..+...+++.
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt-~D~~-~~~~~iKm~Tkl~e~l---- 437 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT-ADEP-RAVAVIKMLTKLFERL---- 437 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc-Ccch-HHHHHHHHHHHHHhhc----
Confidence 99999999999999999866 667888899999988888888776655433332 2222 2234556666655532
Q ss_pred CCCCChhhHHHHHHhHccc----cCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHH
Q 001255 643 EGSGNLGILKLWLAKLTPL----VHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSL 704 (1113)
Q Consensus 643 ~~~~~~~~~~~~l~~l~~~----~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l 704 (1113)
...++-..|+.++++ .+-.+..|||+|.=||++||..+|-+.+.-+|..|+......+
T Consensus 438 ----~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~Ll 499 (516)
T KOG2956|consen 438 ----SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLL 499 (516)
T ss_pred ----CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHH
Confidence 224566667777765 3448899999999999999999987778888888877764443
No 24
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.0036 Score=75.63 Aligned_cols=442 Identities=15% Similarity=0.209 Sum_probs=259.9
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHH-HHHHHHHhhcCcchHHHHHHHHHHH-------HHHHhhCcc---
Q 001255 496 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEK-VMKLFFQHLDDPHHKVAQAALSTLA-------DIIPSCRKP--- 564 (1113)
Q Consensus 496 ~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~-l~~~l~~~l~Dsn~kV~~~~L~~l~-------~l~~~~~~~--- 564 (1113)
.+.+=+.|.+||..|-+|..--= ++..+-+++ +..+-...+...|-+|..+++|--. +++..+++.
T Consensus 227 q~~d~~i~~aa~~ClvkIm~LyY---~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~ 303 (859)
T KOG1241|consen 227 QSPDEEIQVAAFQCLVKIMSLYY---EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQ 303 (859)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46667789999999999886421 122245554 5555556677889999999887544 222222221
Q ss_pred --------h-HHHHHHHHHHHHHHhcC--C----c-hhhHHHHHHHHHHHHhhCCccchHHHHHHhhccC-CC--HHHHH
Q 001255 565 --------F-ESYMERILPHVFSRLID--P----K-ELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ-RS--PKAKL 625 (1113)
Q Consensus 565 --------~-~~~l~~ll~~ll~klgD--~----K-~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~-kn--pkvk~ 625 (1113)
| +..+..++|.|++.|.- - - =+...+|-.||..+++.++-+. ++.++.|+..+ +| ++-|.
T Consensus 304 ~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I-v~~Vl~Fiee~i~~pdwr~re 382 (859)
T KOG1241|consen 304 GLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI-VPHVLPFIEENIQNPDWRNRE 382 (859)
T ss_pred CCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc-hhhhHHHHHHhcCCcchhhhh
Confidence 2 45566899999988841 1 1 1345688999999998887654 77899999754 54 56666
Q ss_pred HHHHHHHHHHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHH
Q 001255 626 AVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLR 705 (1113)
Q Consensus 626 ~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~ 705 (1113)
+..-.....+.. -++. .-..-+..+++.++.++.|++--||..+.-.|+.+..++... -+|..+...+.
T Consensus 383 aavmAFGSIl~g--p~~~--~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~-------~~n~~~l~~~l 451 (859)
T KOG1241|consen 383 AAVMAFGSILEG--PEPD--KLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEA-------IINQELLQSKL 451 (859)
T ss_pred HHHHHHHhhhcC--Cchh--hhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhh-------cccHhhhhHHH
Confidence 544444333321 0000 011223345667777888999999999999999998765211 11222212111
Q ss_pred HHHhhhchhhHHHHHHHHHhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 001255 706 RALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLM 785 (1113)
Q Consensus 706 ~al~~~~~~~~~~l~~~l~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1113)
.+ +.+.+....+.. .+-.+.. .+
T Consensus 452 ~~-----------l~~gL~DePrva-------------~N~CWAf-------------------------~~-------- 474 (859)
T KOG1241|consen 452 SA-----------LLEGLNDEPRVA-------------SNVCWAF-------------------------IS-------- 474 (859)
T ss_pred HH-----------HHHHhhhCchHH-------------HHHHHHH-------------------------HH--------
Confidence 11 111221110000 0000000 00
Q ss_pred cCCCCCCCCchhhhhhhhccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCC
Q 001255 786 TGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHH 865 (1113)
Q Consensus 786 ~~s~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1113)
- -+..+... + +. ..+++.+|-
T Consensus 475 ----------L-aea~~eA~-------~---------s~-~qt~~~t~~------------------------------- 495 (859)
T KOG1241|consen 475 ----------L-AEAAYEAA-------V---------SN-GQTDPATPF------------------------------- 495 (859)
T ss_pred ----------H-HHHHHHhc-------c---------CC-CCCCccchh-------------------------------
Confidence 0 00000000 0 00 000000000
Q ss_pred CCcccccCCcCcCCCChHHHHHHh--hcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHH----Hhc----
Q 001255 866 KPSAIKTNSLTDAGPSIPQILHLM--CNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLE----VLD---- 935 (1113)
Q Consensus 866 ~~~~~~~~~~~d~~~~i~~lL~~l--~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~----~L~---- 935 (1113)
..+.|..||+.- .|.|+ .--|..|.+.|.++|+.....+-.- ...+....+. .+.
T Consensus 496 ------------y~~ii~~Ll~~tdr~dgnq--sNLR~AAYeALmElIk~st~~vy~~-v~~~~l~il~kl~q~i~~~~l 560 (859)
T KOG1241|consen 496 ------------YEAIIGSLLKVTDRADGNQ--SNLRSAAYEALMELIKNSTDDVYPM-VQKLTLVILEKLDQTISSQIL 560 (859)
T ss_pred ------------HHHHHHHHHhhccccccch--hhHHHHHHHHHHHHHHcCcHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 001133333321 12233 2468999999999998775433211 1222222222 221
Q ss_pred ---CC-CHH-HHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHhhcCh------hhHH
Q 001255 936 ---DA-DSS-VREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD-AVPKVSNEAEHCLTVVLSQYDP------FRCL 1003 (1113)
Q Consensus 936 ---D~-n~~-vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~D-s~~~Vr~aa~~~l~~l~~~~~p------~~~l 1003 (1113)
|. +.+ +.-.=|.+|+.+.+.+++.+.++.+.++..++..+.- ....|.+.|--++-+++.+++. +.+.
T Consensus 561 ~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~ 640 (859)
T KOG1241|consen 561 SLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFK 640 (859)
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 11 111 2223378899999999999999999888888877764 2356788888888888888765 3577
Q ss_pred HHhhhhh-ccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhhhhHh
Q 001255 1004 SVIVPLL-VTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ--SADVRKTVVFCLVDIYIMLGKAFLP 1080 (1113)
Q Consensus 1004 ~~l~~~l-~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~--~seVRkaAv~clv~i~~~lGe~i~p 1080 (1113)
|||.-+| ...+++.-..++-+.+.|...++.+ +.+....+|-.|++++... +-+|+=+-.-|+-.|-..+|.+|.|
T Consensus 641 pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~-i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~ 719 (859)
T KOG1241|consen 641 PYLLMGLSNFQEYQVCAAAVGLVGDLARALEDD-ILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEP 719 (859)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHH
Confidence 7777777 3567888888888888888777744 4477788899999999853 3458888999999999999999999
Q ss_pred hhhc
Q 001255 1081 YLER 1084 (1113)
Q Consensus 1081 ~l~~ 1084 (1113)
||.-
T Consensus 720 Yl~~ 723 (859)
T KOG1241|consen 720 YLEM 723 (859)
T ss_pred HHHH
Confidence 9874
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.31 E-value=0.00078 Score=91.07 Aligned_cols=384 Identities=16% Similarity=0.156 Sum_probs=245.2
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHH--H
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME--R 571 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~--~ 571 (1113)
++.+.+=..+..|+..|..+-.......+.|. +- ..+..|.+.|..++.++...+.-+|.-+.. +.+..+..+. .
T Consensus 454 LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIi-ea-GaIP~LV~LL~s~~~~iqeeAawAL~NLa~-~~~qir~iV~~aG 530 (2102)
T PLN03200 454 LLGLSSEQQQEYAVALLAILTDEVDESKWAIT-AA-GGIPPLVQLLETGSQKAKEDSATVLWNLCC-HSEDIRACVESAG 530 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHHCC
Confidence 56677778899999888887654332111111 11 246678888989999999999999998876 3444555553 5
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCCCh-hh
Q 001255 572 ILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNL-GI 650 (1113)
Q Consensus 572 ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~-~~ 650 (1113)
++|.|++-|.+...-++..|..+|..+...-..+ +++.+...+ ...+++++..+++-+...+.- .+..++... ..
T Consensus 531 AIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-~I~~Lv~LL-lsdd~~~~~~aL~vLgnIlsl--~~~~d~~~~g~~ 606 (2102)
T PLN03200 531 AVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-TISQLTALL-LGDLPESKVHVLDVLGHVLSV--ASLEDLVREGSA 606 (2102)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-HHHHHHHHh-cCCChhHHHHHHHHHHHHHhh--cchhHHHHHhhh
Confidence 8999999997555568888999998887655444 345555444 457788888877765443321 110000000 00
Q ss_pred HHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhhh
Q 001255 651 LKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQ 730 (1113)
Q Consensus 651 ~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l~~~~~~~ 730 (1113)
..-.++.++.++...|.++++.|..+|..++... . +....+ +.
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~-~------------d~~~av---v~--------------------- 649 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSR-Q------------DLCESL---AT--------------------- 649 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-h------------HHHHHH---HH---------------------
Confidence 1125667777777777778777777777766311 0 000000 00
Q ss_pred ccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhhccccCCC
Q 001255 731 RLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGAN 810 (1113)
Q Consensus 731 ~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~~~~~~~ 810 (1113)
T Consensus 650 -------------------------------------------------------------------------------- 649 (2102)
T PLN03200 650 -------------------------------------------------------------------------------- 649 (2102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChHHHHHHhh
Q 001255 811 ADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMC 890 (1113)
Q Consensus 811 ~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~lL~~l~ 890 (1113)
...|+.++..|.
T Consensus 650 --------------------------------------------------------------------agaIpPLV~LLs 661 (2102)
T PLN03200 650 --------------------------------------------------------------------DEIINPCIKLLT 661 (2102)
T ss_pred --------------------------------------------------------------------cCCHHHHHHHHh
Confidence 001333444554
Q ss_pred cCCCCChhHHHHHHHHHHHHHhcCCchhhHHh-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHH
Q 001255 891 NGNDGSPTSKHGALQQLIKASVANDHSIWTKY-FNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIE 969 (1113)
Q Consensus 891 ~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~-f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~ 969 (1113)
..+ .+.++++...|..+...+........ -...++.|.+.|.+.+..+++.|+..|..|+..-....+--.+..++
T Consensus 662 s~~---~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~ 738 (2102)
T PLN03200 662 NNT---EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIIL 738 (2102)
T ss_pred cCC---hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHH
Confidence 443 25677777777777754432211110 12346678888989999999999999999998654332222345689
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHhhcChhhH----------HHHhhhhhccCCh--hHHHHHHHHHHHHHHh-hC---
Q 001255 970 KLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRC----------LSVIVPLLVTEDE--KTLVTCINCLTKLVGR-LS--- 1033 (1113)
Q Consensus 970 ~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~----------l~~l~~~l~s~~~--~~~~~al~~L~~lie~-~~--- 1033 (1113)
.|++.+++....+++.|-.++..++...+.++. +..|+.+|++.+. .....+++.|.++... .+
T Consensus 739 ~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~ 818 (2102)
T PLN03200 739 PLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANF 818 (2102)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCC
Confidence 999999999999999999999999999887652 3334555555443 3444688888888853 11
Q ss_pred -HHHH--HhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1034 -QEEL--MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1034 -~~~l--~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
++.. .-..|.=+..|++|+.+.+++|-..|+..+..+|.
T Consensus 819 ~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 819 SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 1111 11234445678899999999999999999988883
No 26
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.15 E-value=0.0005 Score=78.27 Aligned_cols=192 Identities=17% Similarity=0.220 Sum_probs=142.7
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCC-chhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch--h
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAND-HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK--D 958 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~-~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~--~ 958 (1113)
+.+.+..+.+++ .+.|.+||..|..++...- ...+...+..|+..+++.++-.+..-+..|++++..++-.+| .
T Consensus 45 L~~~Id~l~eK~---~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKS---SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 455666666665 5899999999999997764 445566789999999999976666667788999999999877 5
Q ss_pred hhhhHHHHHHHHHHHHhCCChH--HHHHHHHHHHHHHHhhcC--hhh---HHHHhh-----hhhccC----------Chh
Q 001255 959 VMEDSVEIVIEKLLHVTKDAVP--KVSNEAEHCLTVVLSQYD--PFR---CLSVIV-----PLLVTE----------DEK 1016 (1113)
Q Consensus 959 ~~~~~~~~~l~~ll~~~~Ds~~--~Vr~aa~~~l~~l~~~~~--p~~---~l~~l~-----~~l~s~----------~~~ 1016 (1113)
..+..++.+.|.|...+.|... .+|.++..||-.++-.+. ++. ++..+- .++++. +..
T Consensus 122 ~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 122 DSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred cHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 5667788888888888877643 466777777766554432 222 223322 122221 124
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 001255 1017 TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1017 ~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe 1076 (1113)
....||..++.|+..++...+...+...+|.+...++..+.+||.+|-.++.-+|....+
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 566888999999988887777777888999999999999999999999999989877763
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.15 E-value=0.0021 Score=79.10 Aligned_cols=435 Identities=17% Similarity=0.245 Sum_probs=248.2
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcch
Q 001255 486 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF 565 (1113)
Q Consensus 486 ~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~ 565 (1113)
+.+++++ .. .+=++|++++..|-.+...|... ..+.-..++.+...++.+=..+.=.+..+... =
T Consensus 9 l~~~~~~--~~-~~~~~~~~~l~kli~~~~~G~~~--------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~----~ 73 (526)
T PF01602_consen 9 LAKILNS--FK-IDISKKKEALKKLIYLMMLGYDI--------SFLFMEVIKLISSKDLELKRLGYLYLSLYLHE----D 73 (526)
T ss_dssp HHHHHHC--SS-THHHHHHHHHHHHHHHHHTT-----------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTT----S
T ss_pred HHHHHhc--CC-CCHHHHHHHHHHHHHHHHcCCCC--------chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc----c
Confidence 3455552 12 57889999999998888777532 12233345566666665433333333322222 2
Q ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 001255 566 ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGS 645 (1113)
Q Consensus 566 ~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~ 645 (1113)
.+.+..++..+.+-|.+..+.+|..|..+|..++..--.+.+++.|.+.+. +.+|-||..++..+...+.. .+
T Consensus 74 ~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~---~p--- 146 (526)
T PF01602_consen 74 PELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLS-DPSPYVRKKAALALLKIYRK---DP--- 146 (526)
T ss_dssp HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHH---CH---
T ss_pred hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhc-CCchHHHHHHHHHHHHHhcc---CH---
Confidence 346777888888888899999999999999999855555666777766654 68899999998888765542 11
Q ss_pred CChhhHHH-HHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 001255 646 GNLGILKL-WLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQ 724 (1113)
Q Consensus 646 ~~~~~~~~-~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l~ 724 (1113)
..+.. +++.+..++.|+++.|+.+|..++..+ ++ .++....++. .....+.+.+....|-....+..++.
T Consensus 147 ---~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~-~~~~~~~~~~----~~~~~L~~~l~~~~~~~q~~il~~l~ 217 (526)
T PF01602_consen 147 ---DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KC-NDDSYKSLIP----KLIRILCQLLSDPDPWLQIKILRLLR 217 (526)
T ss_dssp ---CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HC-THHHHTTHHH----HHHHHHHHHHTCCSHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-cc-CcchhhhhHH----HHHHHhhhcccccchHHHHHHHHHHH
Confidence 22333 688899999999999999999999998 22 2221111110 01111111111112222222222221
Q ss_pred hhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhhc
Q 001255 725 SKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQN 804 (1113)
Q Consensus 725 ~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~~ 804 (1113)
.-.. . .+ .... + ...-+....-
T Consensus 218 ~~~~----------~----~~-~~~~----~---------------------------------------~~~i~~l~~~ 239 (526)
T PF01602_consen 218 RYAP----------M----EP-EDAD----K---------------------------------------NRIIEPLLNL 239 (526)
T ss_dssp TSTS----------S----SH-HHHH----H---------------------------------------HHHHHHHHHH
T ss_pred hccc----------C----Ch-hhhh----H---------------------------------------HHHHHHHHHH
Confidence 1000 0 00 0000 0 0000000000
Q ss_pred cccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChHH
Q 001255 805 FETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQ 884 (1113)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~ 884 (1113)
.. + ..|..-+.+. .-+ ..+.+... -....+..
T Consensus 240 l~----------------s-------~~~~V~~e~~-------~~i---------~~l~~~~~---------~~~~~~~~ 271 (526)
T PF01602_consen 240 LQ----------------S-------SSPSVVYEAI-------RLI---------IKLSPSPE---------LLQKAINP 271 (526)
T ss_dssp HH----------------H-------HHHHHHHHHH-------HHH---------HHHSSSHH---------HHHHHHHH
T ss_pred hh----------------c-------cccHHHHHHH-------HHH---------HHhhcchH---------HHHhhHHH
Confidence 00 0 0000000000 000 00000000 00001355
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHH
Q 001255 885 ILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSV 964 (1113)
Q Consensus 885 lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~ 964 (1113)
+.+.+.+.+ +..|.-+|+.|..++.... ...+ .....++....|.+..+|..+|.+|..|+.. .-+
T Consensus 272 L~~lL~s~~---~nvr~~~L~~L~~l~~~~~----~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~------~n~ 337 (526)
T PF01602_consen 272 LIKLLSSSD---PNVRYIALDSLSQLAQSNP----PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE------SNV 337 (526)
T ss_dssp HHHHHTSSS---HHHHHHHHHHHHHHCCHCH----HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H------HHH
T ss_pred HHHHhhccc---chhehhHHHHHHHhhcccc----hhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc------cch
Confidence 666665333 5689999999888876651 1122 2222334334488899999999999999862 334
Q ss_pred HHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHhhcCh--hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhh
Q 001255 965 EIVIEKLLHVTKDA-VPKVSNEAEHCLTVVLSQYDP--FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL 1041 (1113)
Q Consensus 965 ~~~l~~ll~~~~Ds-~~~Vr~aa~~~l~~l~~~~~p--~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L 1041 (1113)
..++..+++.+.+. ...++..+..++..++..+++ ..++.++..++...+.....+++..+..++...+ .+ -
T Consensus 338 ~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~--~~---~ 412 (526)
T PF01602_consen 338 KEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP--EL---R 412 (526)
T ss_dssp HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST--TT---H
T ss_pred hhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcCh--hh---h
Confidence 45777777777544 456999999999988888765 4599999999987666666677777777775532 22 3
Q ss_pred hhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhh
Q 001255 1042 PSFLPALFEAFGN-QSADVRKTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1042 ~~lip~l~~~l~D-~~seVRkaAv~clv~i~~~lGe 1076 (1113)
..++..+.+.+.+ .++++++++..++-++...+.+
T Consensus 413 ~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 413 EKILKKLIELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 4578889999987 7888888888888877766665
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.06 E-value=0.00044 Score=90.17 Aligned_cols=115 Identities=21% Similarity=0.153 Sum_probs=56.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhh
Q 001255 930 VLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPL 1009 (1113)
Q Consensus 930 Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~ 1009 (1113)
|...+.|.+..||..|+..|..+-.. ..++..++..+.|+...||.+|..+|.. ++....++.|.+.
T Consensus 780 L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~----l~~~~a~~~L~~~ 846 (897)
T PRK13800 780 VRALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAG----AAADVAVPALVEA 846 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHh----ccccchHHHHHHH
Confidence 44555555555665555555443110 0112334455555555566555555532 2333445555555
Q ss_pred hccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 001255 1010 LVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCL 1067 (1113)
Q Consensus 1010 l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~cl 1067 (1113)
+.+.++..+..++..|+.+ . + -+...+.|.++++|.+++||++|..+|
T Consensus 847 L~D~~~~VR~~A~~aL~~~--~-~-------~~~a~~~L~~al~D~d~~Vr~~A~~aL 894 (897)
T PRK13800 847 LTDPHLDVRKAAVLALTRW--P-G-------DPAARDALTTALTDSDADVRAYARRAL 894 (897)
T ss_pred hcCCCHHHHHHHHHHHhcc--C-C-------CHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5555555555555554442 0 0 112334455555666666666665554
No 29
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.02 E-value=0.015 Score=68.64 Aligned_cols=139 Identities=15% Similarity=0.182 Sum_probs=108.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHH
Q 001255 925 QILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLS 1004 (1113)
Q Consensus 925 ~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~ 1004 (1113)
.|-..|++.|+.-|..+|..|-..++.|.++.|+.= +|-.|++-++-...+-|..-.-++..+++.|+|..++|
T Consensus 730 RIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqd------vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP 803 (975)
T COG5181 730 RICFELVDSLKSWNKEIRRNATETFGCISRAIGPQD------VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLP 803 (975)
T ss_pred HHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHH------HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHH
Confidence 334446667777899999999999999999888643 56667777776666677777778888999999999999
Q ss_pred HhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 1005 VIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus 1005 ~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i 1070 (1113)
+|+.-.++-+.-.--+.|+-|..++|.+|...+ ..+-.+.|.|..++.|+|+--|..|-+.+-.+
T Consensus 804 ~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~-dYvy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 804 TLMSDYETPEANVQNGVLKAMCFMFEYIGQASL-DYVYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred HHHhcccCchhHHHHhHHHHHHHHHHHHHHHHH-HHHHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 988766554333333568999999999985544 46677889999999999999999998876543
No 30
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.94 E-value=0.00065 Score=80.95 Aligned_cols=201 Identities=21% Similarity=0.296 Sum_probs=149.9
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhchhh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVL-DDADSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L-~D~n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
.+..+++.....++ +..|..+++-+..+++.-... +.+..++..+...+ .+.....+..++.++..+.+++--+
T Consensus 190 ll~~l~~~~~~~~~--~~~~~~~~~~la~LvNK~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 190 LLQSLLNLALSSED--EFSRLAALQLLASLVNKWPDD---DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred HHHHHHHHHHcCCC--hHHHHHHHHHHHHHHcCCCCh---hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence 35666666655553 578999999888888663221 25667777777666 4445667888999999999987666
Q ss_pred hhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcC--------h-------hhHHHHhhhh----hccCChhHHHH
Q 001255 960 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD--------P-------FRCLSVIVPL----LVTEDEKTLVT 1020 (1113)
Q Consensus 960 ~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~--------p-------~~~l~~l~~~----l~s~~~~~~~~ 1020 (1113)
-.+....++..+++.+.| +.+...|..++..++.-.+ . .+++..+.|. ++..+...+..
T Consensus 265 ~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~ 342 (415)
T PF12460_consen 265 GHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSN 342 (415)
T ss_pred CCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHH
Confidence 677888889999999999 5778888888887775521 1 1344444444 43333335566
Q ss_pred HHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcCChh
Q 001255 1021 CINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNST 1088 (1113)
Q Consensus 1021 al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L~~s 1088 (1113)
.+..|..++++.|...+.++++.++|.+.++++-.+.+|+.++..++..+...-.+-+.+|+..|-+.
T Consensus 343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~ 410 (415)
T PF12460_consen 343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPR 410 (415)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999888766656677888766443
No 31
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.026 Score=68.54 Aligned_cols=212 Identities=15% Similarity=0.185 Sum_probs=135.3
Q ss_pred ChHHHHHHhhcC----CCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Q 001255 881 SIPQILHLMCNG----NDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ 956 (1113)
Q Consensus 881 ~i~~lL~~l~~~----~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~ 956 (1113)
.++.||+.|... .++.|.-.++|--.|.-+.+-.+-.. ..-++.-+.+-+...|-.-|+.|.-.++.++..-
T Consensus 320 v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~I----v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp 395 (859)
T KOG1241|consen 320 VVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDI----VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGP 395 (859)
T ss_pred hhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccc----hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCC
Confidence 456777766542 33348888888777664443322111 2234445555666777778888888888888743
Q ss_pred h-hhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh--------hhHHHHhhhhhccCChhHHHHHHHHHHH
Q 001255 957 K-DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP--------FRCLSVIVPLLVTEDEKTLVTCINCLTK 1027 (1113)
Q Consensus 957 ~-~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p--------~~~l~~l~~~l~s~~~~~~~~al~~L~~ 1027 (1113)
. ....+++...+|.+++...|+.-.|+++++-++..++..++- ...+.++..++...-....-.|=. +-.
T Consensus 396 ~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWA-f~~ 474 (859)
T KOG1241|consen 396 EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWA-FIS 474 (859)
T ss_pred chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHH-HHH
Confidence 2 347788999999999999999999999999999999988652 124555566664321111111111 112
Q ss_pred HHHhhC--------HHHHHhhhhhHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhhhhhHhhhhcCChhhHhhHHHH
Q 001255 1028 LVGRLS--------QEELMAQLPSFLPALFEAFGN---QSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIY 1096 (1113)
Q Consensus 1028 lie~~~--------~~~l~~~L~~lip~l~~~l~D---~~seVRkaAv~clv~i~~~lGe~i~p~l~~L~~s~~kLl~~y 1096 (1113)
|++.+. .+...+....|+..|++.-+- .++-.|-+|+.+|.++.+...++..|.+.++..--+.-|+.-
T Consensus 475 Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~ 554 (859)
T KOG1241|consen 475 LAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQT 554 (859)
T ss_pred HHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 232221 122334566677777776653 678999999999999999998888877666554444444433
Q ss_pred H
Q 001255 1097 A 1097 (1113)
Q Consensus 1097 i 1097 (1113)
|
T Consensus 555 i 555 (859)
T KOG1241|consen 555 I 555 (859)
T ss_pred H
Confidence 3
No 32
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.0017 Score=81.82 Aligned_cols=196 Identities=20% Similarity=0.276 Sum_probs=154.0
Q ss_pred hhHHHHHHHHHHHHHhcCCch-hhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHh
Q 001255 897 PTSKHGALQQLIKASVANDHS-IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 975 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~-~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~ 975 (1113)
...++.+.+-|.+++...... ...++..+|...|++-+.+....++...|.+|..|++..+..+..++...||.+|-.+
T Consensus 668 ~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~ 747 (1176)
T KOG1248|consen 668 TKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL 747 (1176)
T ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 467888887777777653222 3356778888888888888877788889999999999998778888999999999999
Q ss_pred CCChHHHHHHHHHHHHHHH--hhc-----Ch-----hhHHHHhhhhhc--------------------------------
Q 001255 976 KDAVPKVSNEAEHCLTVVL--SQY-----DP-----FRCLSVIVPLLV-------------------------------- 1011 (1113)
Q Consensus 976 ~Ds~~~Vr~aa~~~l~~l~--~~~-----~p-----~~~l~~l~~~l~-------------------------------- 1011 (1113)
+|-...-|+.|.+||..|. ..+ .| +..|.+|.+++.
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~ 827 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEK 827 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 9998999999999998888 221 11 124444444422
Q ss_pred ----------cCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-hhhHh
Q 001255 1012 ----------TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG-KAFLP 1080 (1113)
Q Consensus 1012 ----------s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG-e~i~p 1080 (1113)
+.+-.+...|+..+.-++...+...+.++++.++|.+..-.+|....||++....+-.+.+.+| +++.+
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~ 907 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELES 907 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHh
Confidence 2233455577777777887788777888999999999999999999999999999999999999 79999
Q ss_pred hhhcCChhhHhhHHH
Q 001255 1081 YLERLNSTQLRLVTI 1095 (1113)
Q Consensus 1081 ~l~~L~~s~~kLl~~ 1095 (1113)
|++ ..++++|+-
T Consensus 908 ~~p---ee~~klL~n 919 (1176)
T KOG1248|consen 908 FLP---EEDMKLLTN 919 (1176)
T ss_pred hCH---HHHHHHHHH
Confidence 998 677777664
No 33
>PRK09687 putative lyase; Provisional
Probab=97.81 E-value=0.00043 Score=77.72 Aligned_cols=163 Identities=13% Similarity=0.191 Sum_probs=112.1
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEV-LDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~-L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
+..++..+-.+.+ ...|..|...|..+-..... ....+..|... +.|++..||..|+..|+.+....
T Consensus 55 ~~~~l~~ll~~~d--~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~---- 122 (280)
T PRK09687 55 VFRLAIELCSSKN--PIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKN---- 122 (280)
T ss_pred HHHHHHHHHhCCC--HHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc----
Confidence 3334444433332 47899988887764221111 22344555554 68889999999999999885422
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhh
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ 1040 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~ 1040 (1113)
..+...++..+...+.|+...||.+|..+|. .++....++.|...+.+.++..+..|+..|+.+ ...
T Consensus 123 ~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg----~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~--~~~------- 189 (280)
T PRK09687 123 PLYSPKIVEQSQITAFDKSTNVRFAVAFALS----VINDEAAIPLLINLLKDPNGDVRNWAAFALNSN--KYD------- 189 (280)
T ss_pred cccchHHHHHHHHHhhCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC--CCC-------
Confidence 1223345666777788888999998888884 345567889999999988888888888877776 111
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001255 1041 LPSFLPALFEAFGNQSADVRKTVVFCLVD 1069 (1113)
Q Consensus 1041 L~~lip~l~~~l~D~~seVRkaAv~clv~ 1069 (1113)
-+.+++.|.+.+.|.+.+||+.|+..|..
T Consensus 190 ~~~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 190 NPDIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 23456778888899999999999998863
No 34
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.79 E-value=0.033 Score=67.12 Aligned_cols=161 Identities=14% Similarity=0.177 Sum_probs=112.9
Q ss_pred HHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcch-HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhC-
Q 001255 525 IQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF-ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTY- 602 (1113)
Q Consensus 525 ~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~-~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~- 602 (1113)
++.+..||..+..+|+..-.+|=|.++++++.++..++..- +..+..|--.|.+.||+--+-|=.-+..||-+|....
T Consensus 794 kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 794 KPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred ccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence 35677788888889999999999999999999999886442 4556666666788998555446666777777777665
Q ss_pred ------CccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCCChhhHHHHHHhHcc---ccCCCCHHHHHHH
Q 001255 603 ------SVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTP---LVHDKNTKLKEAA 673 (1113)
Q Consensus 603 ------~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~---~~~d~n~~VR~aA 673 (1113)
|...+++.|..++. ++.-||..-.+.++. .+. +.+..+.+ .+.|..=.+. ++..-|.++|++|
T Consensus 874 m~km~pPi~dllPrltPILk-nrheKVqen~IdLvg-~Ia---drgpE~v~---aREWMRIcfeLlelLkahkK~iRRaa 945 (1172)
T KOG0213|consen 874 MTKMTPPIKDLLPRLTPILK-NRHEKVQENCIDLVG-TIA---DRGPEYVS---AREWMRICFELLELLKAHKKEIRRAA 945 (1172)
T ss_pred ccccCCChhhhcccchHhhh-hhHHHHHHHHHHHHH-HHH---hcCcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666665553 345688887777765 453 33334443 4666654444 3445789999999
Q ss_pred HHHHHHHHhhcChhHHHHHH
Q 001255 674 ITCIISVYTHYDSTAVLNFI 693 (1113)
Q Consensus 674 ~~~L~~l~~~~~~~~~~~~l 693 (1113)
.+.++.|-+-+||..++..|
T Consensus 946 ~nTfG~IakaIGPqdVLatL 965 (1172)
T KOG0213|consen 946 VNTFGYIAKAIGPQDVLATL 965 (1172)
T ss_pred HhhhhHHHHhcCHHHHHHHH
Confidence 99999999888886544433
No 35
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.78 E-value=0.00034 Score=65.40 Aligned_cols=92 Identities=25% Similarity=0.328 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCC
Q 001255 899 SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDA 978 (1113)
Q Consensus 899 ~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds 978 (1113)
.|+.+|-.|..+...-+.. +.+++..|+..++..+.|.+..||..|++.|-.|++..+..+-+|+..++..|...+.|+
T Consensus 2 ~R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4788888888775554443 678999999999999999999999999999999999988888889999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 001255 979 VPKVSNEAEHCLT 991 (1113)
Q Consensus 979 ~~~Vr~aa~~~l~ 991 (1113)
.+.|+.+|+..-+
T Consensus 81 d~~Vr~~a~~Ld~ 93 (97)
T PF12755_consen 81 DENVRSAAELLDR 93 (97)
T ss_pred chhHHHHHHHHHH
Confidence 9999999965443
No 36
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00057 Score=87.46 Aligned_cols=174 Identities=20% Similarity=0.364 Sum_probs=135.9
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch-hhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK-DVM 960 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~-~~~ 960 (1113)
|+.|..--.|.+ +.-..||..|.+.+......+.+++|++|++.|+.-|.++.-.||+.+|-.|..|++..+ ..+
T Consensus 1000 IPrLyRY~yDP~----~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPD----KKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred hHHHhhhccCCc----HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 344444444443 345679999999988887778899999999999999999999999999999999998543 224
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhc----Ch------hhHHHHhhhhhc-----cCChhHHHHHHHHH
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY----DP------FRCLSVIVPLLV-----TEDEKTLVTCINCL 1025 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~----~p------~~~l~~l~~~l~-----s~~~~~~~~al~~L 1025 (1113)
...+.-+...++....|=|+.||++|+.+++++.+.| .+ ..++.++.|++- ++-...+..||..+
T Consensus 1076 ~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl 1155 (1702)
T KOG0915|consen 1076 KEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTL 1155 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHH
Confidence 4445556666777788999999999999999887664 22 246666666653 45566788999999
Q ss_pred HHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHH
Q 001255 1026 TKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVR 1060 (1113)
Q Consensus 1026 ~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVR 1060 (1113)
-.+++..| ..+.++++.++|.+...+..-++.|=
T Consensus 1156 ~dl~Kssg-~~lkP~~~~LIp~ll~~~s~lE~~vL 1189 (1702)
T KOG0915|consen 1156 MDLAKSSG-KELKPHFPKLIPLLLNAYSELEPQVL 1189 (1702)
T ss_pred HHHHHhch-hhhcchhhHHHHHHHHHccccchHHH
Confidence 99998887 57789999999999999887777663
No 37
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.60 E-value=0.25 Score=68.02 Aligned_cols=186 Identities=17% Similarity=0.245 Sum_probs=131.4
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 961 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~ 961 (1113)
++-|++.|...+ ...+..|+..|..+...+....+.-.=...+..|.+.|...+..+++.|+.+|..|+.. .....
T Consensus 448 Ip~LV~LL~s~s---~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir 523 (2102)
T PLN03200 448 VQLLISLLGLSS---EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIR 523 (2102)
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHH
Confidence 566777776654 36788888887776654322111000123466788888888889999999999999874 22233
Q ss_pred hHH--HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHh
Q 001255 962 DSV--EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMA 1039 (1113)
Q Consensus 962 ~~~--~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~ 1039 (1113)
..+ ...+|.|++.+.+....+++.|..++..++...... .++.+...+.+.+......+++.++.+++-...+....
T Consensus 524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 333 247889999999888899988888888887765544 45667777887777777778998888876544332211
Q ss_pred ---hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1040 ---QLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1040 ---~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
.-...+|.|.+-+.+.+.++++.|..+|..++.
T Consensus 603 ~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 603 EGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS 638 (2102)
T ss_pred HhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 123567999999999999999999999988864
No 38
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.57 E-value=0.23 Score=62.54 Aligned_cols=459 Identities=19% Similarity=0.200 Sum_probs=257.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERIL 573 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll 573 (1113)
++..-.|-.|..+++.|..++..++.. .+...+..++.+.-.+ ..++.-+..++.+...+..--.+.++.=+
T Consensus 167 l~~~eet~vr~k~ve~l~~v~~~~~~~-----~~~~~lv~l~~~l~~~---d~~~sr~sacglf~~~~~~~~~~~vk~el 238 (759)
T KOG0211|consen 167 LATVEETGVREKAVESLLKVAVGLPKE-----KLREHLVPLLKRLATG---DWFQSRLSACGLFGKLYVSLPDDAVKREL 238 (759)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcChH-----HHHHHHHHHHHHccch---hhhhcchhhhhhhHHhccCCChHHHHHHH
Confidence 456778999999999999999998642 1223344444443333 56677778888888877644458888888
Q ss_pred HHHHHHhc-CCchhhHHHHHHHHHHHHhhCCccchH----HHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCCCh
Q 001255 574 PHVFSRLI-DPKELVRQPCSTTLDIVSKTYSVDSLL----PALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNL 648 (1113)
Q Consensus 574 ~~ll~klg-D~K~~vr~~a~~~L~~i~e~~~~~~~l----~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~ 648 (1113)
..++..+- |.-+.||.++.+-|-.++..++-+..- +.+.....|.+ --||..+.+-+...+. + ++..+
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~-l-~~~~~---- 311 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLD-L-LDDDD---- 311 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHH-h-cCCch----
Confidence 89999995 888889999999888888766554333 33333333333 3588888887765443 2 11110
Q ss_pred hhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChhH-----HHHHHhcCCHHHHHHHHHHHhhhchhhHHHHHHHH
Q 001255 649 GILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTA-----VLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYL 723 (1113)
Q Consensus 649 ~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~~-----~~~~l~~L~~~~~~~l~~al~~~~~~~~~~l~~~l 723 (1113)
+..+.....++...+|.+..||.........+|..+++.. +-.+..-+...+.+. +.+..+.. +.+..|+
T Consensus 312 d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~-r~a~a~~~----~~l~~~l 386 (759)
T KOG0211|consen 312 DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEV-RYAIAKKV----QKLACYL 386 (759)
T ss_pred hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhh-hHHhhcch----HHHhhhc
Confidence 2234455667788899999999999999999999887721 111111011111000 00000000 0000111
Q ss_pred HhhhhhhccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCchhhhhhhh
Q 001255 724 QSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQ 803 (1113)
Q Consensus 724 ~~~~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~~~ 803 (1113)
... ..++ .... ..++ ..++...
T Consensus 387 ~~~----------~~~~-i~~~--~ilp--------------------------------------------~~~~lv~- 408 (759)
T KOG0211|consen 387 NAS----------CYPN-IPDS--SILP--------------------------------------------EVQVLVL- 408 (759)
T ss_pred Ccc----------cccc-cchh--hhhH--------------------------------------------HHHHHHh-
Confidence 000 0000 0000 0000 0000000
Q ss_pred ccccCCCcCCCcccccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCcCCCChH
Q 001255 804 NFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIP 883 (1113)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~ 883 (1113)
|.+..-+....+. .....|-. ++ + ..++++.+
T Consensus 409 --------d~~~~vr~a~a~~---~~~~~p~~---~k--------------~--------------------~ti~~llp 440 (759)
T KOG0211|consen 409 --------DNALHVRSALASV---ITGLSPIL---PK--------------E--------------------RTISELLP 440 (759)
T ss_pred --------cccchHHHHHhcc---ccccCccC---Cc--------------C--------------------cCccccCh
Confidence 0000000000000 00000000 00 0 01122233
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh-hh
Q 001255 884 QILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM-ED 962 (1113)
Q Consensus 884 ~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~-~~ 962 (1113)
.++.++.+.. .+.|....+.+..+............-..+|..+.+...|.+..+|...+.++-.++...+..| .+
T Consensus 441 ~~~~~l~de~---~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~ 517 (759)
T KOG0211|consen 441 LLIGNLKDED---PIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDE 517 (759)
T ss_pred hhhhhcchhh---HHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhH
Confidence 3444443332 3555555554433333333222233456677777777788877788888888888888877432 22
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-hHHHHh---hhhhccCChhHHHHHHHHHHHHHHhhCHHHHH
Q 001255 963 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-RCLSVI---VPLLVTEDEKTLVTCINCLTKLVGRLSQEELM 1038 (1113)
Q Consensus 963 ~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-~~l~~l---~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~ 1038 (1113)
. +-+.+..-+-|..-.|+++|..++..++..++.. .+...+ .......+|..|+.++..+..+++-+|.+...
T Consensus 518 ~---~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~ 594 (759)
T KOG0211|consen 518 K---LAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITC 594 (759)
T ss_pred H---HHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHH
Confidence 2 2222223356777789999999999888888743 222222 22222346888888888888888888877764
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-----hhhHhhhhcCCh
Q 001255 1039 AQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG-----KAFLPYLERLNS 1087 (1113)
Q Consensus 1039 ~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG-----e~i~p~l~~L~~ 1087 (1113)
..++|.+.....|..+.||-.+.+.+-.+...+. +.+.|.+..|..
T Consensus 595 ---~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~ 645 (759)
T KOG0211|consen 595 ---EDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSS 645 (759)
T ss_pred ---HHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhcc
Confidence 4456888888899999999999988888777765 246677766654
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=97.52 E-value=0.59 Score=59.38 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=94.2
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchH
Q 001255 487 SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFE 566 (1113)
Q Consensus 487 ~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~ 566 (1113)
.+++. ++.+.|-..|+=+...|..+.+..+. ..--.+..|.+=+.|+|.-|-.++|.+++.+.. .
T Consensus 71 ~dVvk--~~~S~d~elKKLvYLYL~~ya~~~pe-------lalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~------~ 135 (746)
T PTZ00429 71 VDVVK--LAPSTDLELKKLVYLYVLSTARLQPE-------KALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV------S 135 (746)
T ss_pred HHHHH--HhCCCCHHHHHHHHHHHHHHcccChH-------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc------H
Confidence 57777 67888888888888888777554321 112235555556666666666666655543221 1
Q ss_pred HHHHHHHHH---------------------------------------HHHHhcCCchhhHHHHHHHHHHHHhhCCc--c
Q 001255 567 SYMERILPH---------------------------------------VFSRLIDPKELVRQPCSTTLDIVSKTYSV--D 605 (1113)
Q Consensus 567 ~~l~~ll~~---------------------------------------ll~klgD~K~~vr~~a~~~L~~i~e~~~~--~ 605 (1113)
..+..+++. |.+-|.|.-..|...|..+|..+.+..+- +
T Consensus 136 ~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~ 215 (746)
T PTZ00429 136 SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE 215 (746)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH
Confidence 223333333 33334555555555555555555543321 1
Q ss_pred chHHHHHHhhc--cCCCHHHHHHHHHHHHHHHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHH
Q 001255 606 SLLPALLRSLD--EQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVY 681 (1113)
Q Consensus 606 ~~l~~l~~~~~--~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~ 681 (1113)
.....+.+++. ..-+++.+..+|+.|.. | .+ ....+....+..+.++++-.|+.|.=+|.+++..+.
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~----y--~P---~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQLYILELLAA----Q--RP---SDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHh----c--CC---CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 11222222221 11255666655555532 1 11 122445667777888888889999988888888765
No 40
>PRK09687 putative lyase; Provisional
Probab=97.49 E-value=0.002 Score=72.44 Aligned_cols=159 Identities=11% Similarity=0.145 Sum_probs=113.0
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 961 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~ 961 (1113)
+.+|+..|.+.+ ..+|.+|+..|..+ +. ..++..+...+.|.|..+|..|..+|..|-.....
T Consensus 25 ~~~L~~~L~d~d---~~vR~~A~~aL~~~---~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 25 DDELFRLLDDHN---SLKRISSIRVLQLR---GG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred HHHHHHHHhCCC---HHHHHHHHHHHHhc---Cc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 577888887776 47899999887632 11 22344466667899999999999999986432111
Q ss_pred hHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhhc--ChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHH
Q 001255 962 DSVEIVIEKLLHV-TKDAVPKVSNEAEHCLTVVLSQY--DPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELM 1038 (1113)
Q Consensus 962 ~~~~~~l~~ll~~-~~Ds~~~Vr~aa~~~l~~l~~~~--~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~ 1038 (1113)
....++.|... ..|+...||..|..+|..+.... +...++..+...+.+.++..+..++.-|+. ++
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~----~~----- 156 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSV----IN----- 156 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhc----cC-----
Confidence 22355555554 68999999999999998775332 123456666666777788888877776643 22
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 1039 AQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus 1039 ~~L~~lip~l~~~l~D~~seVRkaAv~clv~i 1070 (1113)
-+..++.|...+.|.+++||..|+++|-.+
T Consensus 157 --~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 157 --DEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred --CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 134568899999999999999999999865
No 41
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.45 E-value=0.00057 Score=70.60 Aligned_cols=101 Identities=19% Similarity=0.327 Sum_probs=86.3
Q ss_pred hhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH---H
Q 001255 995 SQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI---Y 1071 (1113)
Q Consensus 995 ~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i---~ 1071 (1113)
+.++.+..|++..+++...+.|-+..|.+....|+++.+.+.+-+.+|.+++.+.++++.++++|..++.+||..+ .
T Consensus 32 e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 32 EKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3456667899999999888888888888999999988667888899999999999999999999999999999999 9
Q ss_pred HHhhhhhHhhhhcCChhhHhhHHHHHHh
Q 001255 1072 IMLGKAFLPYLERLNSTQLRLVTIYANR 1099 (1113)
Q Consensus 1072 ~~lGe~i~p~l~~L~~s~~kLl~~yi~R 1099 (1113)
..+|+++.||+.+|- -.++.+.++
T Consensus 112 ~~vG~aLvPyyrqLL----p~ln~f~~k 135 (183)
T PF10274_consen 112 DMVGEALVPYYRQLL----PVLNLFKNK 135 (183)
T ss_pred hhhhHHHHHHHHHHH----HHHHHHHhc
Confidence 999999999988773 245555544
No 42
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.44 E-value=0.095 Score=65.86 Aligned_cols=171 Identities=15% Similarity=0.101 Sum_probs=125.3
Q ss_pred ChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHh
Q 001255 896 SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 975 (1113)
Q Consensus 896 ~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~ 975 (1113)
.|..|.+.++-+-..+..-+...+++.|+. .+..|+.|.--.+|+.|...+..++...|..| +...+++++|...
T Consensus 492 ~wRvr~ail~~ip~la~q~~~~~~~~~~~~---l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~ 566 (759)
T KOG0211|consen 492 LWRVRLAILEYIPQLALQLGVEFFDEKLAE---LLRTWLPDHVYSIREAAARNLPALVETFGSEW--ARLEEIPKLLAMD 566 (759)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHhhHHHHH---HHHhhhhhhHHHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHh
Confidence 378899999888877766664444433333 35567778777899999999999999888433 4566899999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhcChhh----HHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHH
Q 001255 976 KDAVPKVSNEAEHCLTVVLSQYDPFR----CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEA 1051 (1113)
Q Consensus 976 ~Ds~~~Vr~aa~~~l~~l~~~~~p~~----~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~ 1051 (1113)
++..-.+|.+...++..++..++-+- +++++..+......-.+..+.++|..++..+..+..... +.|.+..-
T Consensus 567 ~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~---v~pll~~L 643 (759)
T KOG0211|consen 567 LQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEE---VLPLLETL 643 (759)
T ss_pred cCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHH---HHHHHHHh
Confidence 98888999999999999999998765 444444444333334566678999988877776666533 44555555
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHh
Q 001255 1052 FGNQSADVRKTVVFCLVDIYIML 1074 (1113)
Q Consensus 1052 l~D~~seVRkaAv~clv~i~~~l 1074 (1113)
..|.+-+||-.|..+.-.+....
T Consensus 644 ~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 644 SSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred ccCcccchhHHHHHHHHHHHHHH
Confidence 66999999999988876655443
No 43
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.63 Score=57.22 Aligned_cols=168 Identities=15% Similarity=0.199 Sum_probs=106.9
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHH
Q 001255 488 DALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFES 567 (1113)
Q Consensus 488 e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~ 567 (1113)
|..+ ++.|.+=.+++|||..|-.+|..+.. ...++...++-..-.|.+|-...-=-|...+.. ++
T Consensus 39 dL~~--lLdSnkd~~KleAmKRIia~iA~G~d--------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe-----qp 103 (968)
T KOG1060|consen 39 DLKQ--LLDSNKDSLKLEAMKRIIALIAKGKD--------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE-----QP 103 (968)
T ss_pred HHHH--HHhccccHHHHHHHHHHHHHHhcCCc--------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-----CC
Confidence 4444 66788889999999999999998863 344566666667777777765554444433333 22
Q ss_pred HHHHHHHHHHH-HhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCC
Q 001255 568 YMERILPHVFS-RLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSG 646 (1113)
Q Consensus 568 ~l~~ll~~ll~-klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~ 646 (1113)
-+..|=-.-|+ -|+|..+.+|.-|..+|..|+-..=...++-++-+...| .+|-||..+.+=+-..+ ..++
T Consensus 104 dLALLSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D-~s~yVRk~AA~AIpKLY---sLd~---- 175 (968)
T KOG1060|consen 104 DLALLSINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTD-PSPYVRKTAAHAIPKLY---SLDP---- 175 (968)
T ss_pred CceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcC-CcHHHHHHHHHhhHHHh---cCCh----
Confidence 23333333344 458999999999999999887544334444444433322 57899987755443322 2222
Q ss_pred ChhhHHHHHH-hHccccCCCCHHHHHHHHHHHHHHH
Q 001255 647 NLGILKLWLA-KLTPLVHDKNTKLKEAAITCIISVY 681 (1113)
Q Consensus 647 ~~~~~~~~l~-~l~~~~~d~n~~VR~aA~~~L~~l~ 681 (1113)
+.+..+. .|-.++.|+++-|-.+|.-+.-.+|
T Consensus 176 ---e~k~qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 176 ---EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred ---hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 2233344 4455789999999998887766654
No 44
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.39 E-value=0.21 Score=59.35 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-------hHHHHhhh
Q 001255 936 DADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVP 1008 (1113)
Q Consensus 936 D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-------~~l~~l~~ 1008 (1113)
..+.+|....|+.+..|++-.|..-..|+-.+.|-|-+++.|-..+-|+.|...++.++-.|+-. .++.+|-|
T Consensus 811 TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwp 890 (975)
T COG5181 811 TPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWP 890 (975)
T ss_pred CchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhh
Confidence 34566666777777888887777778899889999999999999999999999999999887542 35555555
Q ss_pred hhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-hhhHhhhh---c
Q 001255 1009 LLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG-KAFLPYLE---R 1084 (1113)
Q Consensus 1009 ~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG-e~i~p~l~---~ 1084 (1113)
.|-.........-.+.+..+..-+| ...+|..+.+++-|+.+-|||+=--.+ .++.|+. +.|.||++ .
T Consensus 891 NIle~sPhvi~~~~Eg~e~~~~~lg-------~g~~m~Yv~qGLFHPs~~VRk~ywtvy-n~myv~~~damvp~ypv~~d 962 (975)
T COG5181 891 NILEPSPHVIQSFDEGMESFATVLG-------SGAMMKYVQQGLFHPSSTVRKRYWTVY-NIMYVFDSDAMVPCYPVEED 962 (975)
T ss_pred hccCCCcHHHHHHHHHHHHHHHHhc-------cHHHHHHHHHhccCchHHHHHHHHHHH-hhhhhcccccccccccCCCC
Confidence 5432222112222244444444344 245778999999999999999744433 4555666 57887775 4
Q ss_pred CChhhHhhHH
Q 001255 1085 LNSTQLRLVT 1094 (1113)
Q Consensus 1085 L~~s~~kLl~ 1094 (1113)
+++...+-|.
T Consensus 963 ~n~e~~~~l~ 972 (975)
T COG5181 963 LNPELARTLH 972 (975)
T ss_pred cCHHHHhhhh
Confidence 5555544443
No 45
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.35 E-value=0.013 Score=61.43 Aligned_cols=164 Identities=15% Similarity=0.252 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhC
Q 001255 897 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 976 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~ 976 (1113)
+..|..++-.+.++..-... ..+..++.+...|.|.++.||..|+.+|..|... .+-..-..++..++.++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~-----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN-----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH-----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHc
Confidence 35688888888877644332 2445577788999999999999999999999874 233333345677777889
Q ss_pred CChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhc---c-CCh-----hHHHHHHHHHHHHHHhhC-HHHHHhhhhhHHH
Q 001255 977 DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV---T-EDE-----KTLVTCINCLTKLVGRLS-QEELMAQLPSFLP 1046 (1113)
Q Consensus 977 Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~---s-~~~-----~~~~~al~~L~~lie~~~-~~~l~~~L~~lip 1046 (1113)
|..+.|+..|..++..+.....|..+...+.+.+. . ..+ ...-.-.+++..+++... ..........++.
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~ 153 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQ 153 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 99999999999999999988777665555555553 1 111 111112455556666666 3333334455555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH
Q 001255 1047 ALFEAFGNQSADVRKTVVFCLV 1068 (1113)
Q Consensus 1047 ~l~~~l~D~~seVRkaAv~clv 1068 (1113)
-+..+..+.+..+-+-+.+||.
T Consensus 154 ~~~~~~~~~~~~~~~d~~~~l~ 175 (178)
T PF12717_consen 154 RFLNAVVDEDERVLRDILYCLS 175 (178)
T ss_pred HHHHHcccccHHHHHHHHHHHH
Confidence 5555554667777777777764
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.04 E-value=1.4 Score=53.92 Aligned_cols=164 Identities=18% Similarity=0.202 Sum_probs=107.1
Q ss_pred HHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH--HHHHHHHHHHhcCC
Q 001255 506 AFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ERILPHVFSRLIDP 583 (1113)
Q Consensus 506 al~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l--~~ll~~ll~klgD~ 583 (1113)
..+-|..++...... .-+..+.+.|.+.|..+|.+|-..++..|..++... .....++ ..+++.|+.+++|.
T Consensus 58 ~~~iL~~~l~~~~~~-----~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~ 131 (503)
T PF10508_consen 58 ICDILKRLLSALSPD-----SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDP 131 (503)
T ss_pred HHHHHHHHHhccCHH-----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCC
Confidence 334566666665421 225677888899999999999999999988887543 2334444 56899999999999
Q ss_pred chhhHHHHHHHHHHHHhhCCc-cch-----HHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCCChhhHH--HHH
Q 001255 584 KELVRQPCSTTLDIVSKTYSV-DSL-----LPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILK--LWL 655 (1113)
Q Consensus 584 K~~vr~~a~~~L~~i~e~~~~-~~~-----l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~--~~l 655 (1113)
...|...|.++|..+...-.. +.+ ...|...+ .+.|.-+|..+++.+.+... .+++.+ ..+. -.+
T Consensus 132 d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~---~S~~~~---~~~~~sgll 204 (503)
T PF10508_consen 132 DLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIAS---HSPEAA---EAVVNSGLL 204 (503)
T ss_pred cHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHh---cCHHHH---HHHHhccHH
Confidence 999999999999999864222 122 33333323 23477788778887764322 111110 0011 145
Q ss_pred HhHccccCCCCHHHHHHHHHHHHHHHh
Q 001255 656 AKLTPLVHDKNTKLKEAAITCIISVYT 682 (1113)
Q Consensus 656 ~~l~~~~~d~n~~VR~aA~~~L~~l~~ 682 (1113)
..++..+.+...-|+..|..+|..|-.
T Consensus 205 ~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 205 DLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 566666666667778888888877754
No 47
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.97 E-value=0.0075 Score=56.40 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHhc
Q 001255 502 ARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI 581 (1113)
Q Consensus 502 eR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ll~klg 581 (1113)
.|+.||-+|..+....... +...+..|++-+...|.|.+.+|=-.++|.|..++..++..+-+|...++..|++.+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~---~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD---ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHh---HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6999999999987765543 3367889999999999999999999999999999999998998999999999999999
Q ss_pred CCchhhHHHHHHHHHH
Q 001255 582 DPKELVRQPCSTTLDI 597 (1113)
Q Consensus 582 D~K~~vr~~a~~~L~~ 597 (1113)
|..+.||..| +.|+.
T Consensus 79 D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDR 93 (97)
T ss_pred CCchhHHHHH-HHHHH
Confidence 9999999988 44443
No 48
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.024 Score=67.37 Aligned_cols=187 Identities=18% Similarity=0.244 Sum_probs=133.1
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 961 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~ 961 (1113)
+..||..+..... -.....+.-.|.++.+..+..........+|..|+..+.+.+..|..-||..|.+|...-.....
T Consensus 196 l~pLl~~l~~~~~--~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq 273 (514)
T KOG0166|consen 196 LDPLLRLLNKSDK--LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQ 273 (514)
T ss_pred hHHHHHHhccccc--hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 5667777766542 13555566677777777654443457889999999999999999999999999999975554444
Q ss_pred hHHH-HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-------hHHHHhhhhhc-cCChhHHHHHHHHHHHHHHhh
Q 001255 962 DSVE-IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGRL 1032 (1113)
Q Consensus 962 ~~~~-~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-------~~l~~l~~~l~-s~~~~~~~~al~~L~~lie~~ 1032 (1113)
-.++ .++|.|++.++.+...|+..|..++..|+....-. ..|+++..++. +.+..++.+|.-.+..+.. .
T Consensus 274 ~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G 352 (514)
T KOG0166|consen 274 MVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-G 352 (514)
T ss_pred HHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-C
Confidence 4333 48899999999999999988888887777554332 36777777776 4444455555544444432 2
Q ss_pred CHHHHHhh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1033 SQEELMAQ-LPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1033 ~~~~l~~~-L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
..+.++.. -..++|.|+..+...+=+.||.|..++..+.
T Consensus 353 ~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 353 NQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred CHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 23444432 2578899999999999999999999876543
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.1 Score=59.05 Aligned_cols=177 Identities=18% Similarity=0.209 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHH-HHHHHHHHHh
Q 001255 897 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVE-IVIEKLLHVT 975 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~-~~l~~ll~~~ 975 (1113)
.+++.+||+.|..++..=+...---.++-+...+. .+.+++..+|+.|+.+|+..+++.+..-+..++ .++.+|+..+
T Consensus 97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 57899999999988855322111123555555555 899999999999999999999987754333322 2566666544
Q ss_pred -CCChHHHHHHHHHHHHHHHhhcChhh-------HHHHhhhhhcc--CChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHH
Q 001255 976 -KDAVPKVSNEAEHCLTVVLSQYDPFR-------CLSVIVPLLVT--EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 1045 (1113)
Q Consensus 976 -~Ds~~~Vr~aa~~~l~~l~~~~~p~~-------~l~~l~~~l~s--~~~~~~~~al~~L~~lie~~~~~~l~~~L~~li 1045 (1113)
.|...+++..|.-|+-.++.+.+|-. -+.+|.+.+++ .+.+..+-++.++..+++....+.-. .-...+
T Consensus 176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~-~~~~~f 254 (342)
T KOG2160|consen 176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI-ASSLGF 254 (342)
T ss_pred ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH-HHHhhh
Confidence 46668999999999999998877742 35566777876 45666777788898888655432211 111122
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1046 PALFEAF-GNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1046 p~l~~~l-~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
+.+...+ ..-+.+++.+++..+...-..+.
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 2222222 34566788888887766665554
No 50
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.71 E-value=0.011 Score=72.95 Aligned_cols=152 Identities=21% Similarity=0.265 Sum_probs=118.9
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
.++.++..+.... -.++.--+..|...|..-......++|..|++.|++.|.=.+..||..++++|..++...+.-.
T Consensus 868 ivP~l~~~~~t~~---~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 868 IVPILVSKFETAP---GSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hHHHHHHHhccCC---ccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 3566777766332 2456667777777777555566778999999999999988889998899999999999988889
Q ss_pred hhHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHH
Q 001255 961 EDSVEIVIEKLLHVTKDAV---PKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL 1037 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~---~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l 1037 (1113)
..|+..++|.++..-.|.+ -.||..|.+|+.++.+..|+..|++
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~--------------------------------- 991 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLS--------------------------------- 991 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccc---------------------------------
Confidence 9999999999999888776 6788888888888888777644332
Q ss_pred HhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 1038 MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus 1038 ~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i 1070 (1113)
.-+.++-+|.++++|++--|||.|+.|=-..
T Consensus 992 --fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 992 --FRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred --ccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 1234456788888999999999999886433
No 51
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=96.62 E-value=0.044 Score=54.82 Aligned_cols=111 Identities=18% Similarity=0.269 Sum_probs=81.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH--HH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ER 571 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l--~~ 571 (1113)
.+...||. +...|=.+|..... .-...+.++.++|...|.+|+..+|.+|..++..||..|+..+ +.
T Consensus 13 ~l~~~dw~----~ileicD~In~~~~-------~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~ 81 (139)
T cd03567 13 SNREEDWE----AIQAFCEQINKEPE-------GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFR 81 (139)
T ss_pred cCCCCCHH----HHHHHHHHHHcCCc-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHH
Confidence 35677786 45555555554332 1245788999999999999999999999999999999995443 34
Q ss_pred HHHHHHHHhc------CCchhhHHHHHHHHHHHHhhCCccchHHHHHHhh
Q 001255 572 ILPHVFSRLI------DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSL 615 (1113)
Q Consensus 572 ll~~ll~klg------D~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~ 615 (1113)
++..|++.+. .....|++++.+.+..|.+.|+-+..+..++..|
T Consensus 82 Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~~L 131 (139)
T cd03567 82 FLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYDML 131 (139)
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 5555555552 2456799999999999999998666555555544
No 52
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.59 E-value=0.015 Score=55.73 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=82.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh-------hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHh
Q 001255 967 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP-------FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMA 1039 (1113)
Q Consensus 967 ~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p-------~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~ 1039 (1113)
+++.+++.+.|....++..+..|+..++...+. ..+++.+.+.+.+.+.+....|+..|..+....+ .....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE-DNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH-HHHHH
Confidence 678888888888889999999999988876322 1478888888888888888899999999986443 22211
Q ss_pred -hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1040 -QLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1040 -~L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
.-..++|.+.+.+++.+.+||+.|..++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22347899999999999999999999998765
No 53
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.57 E-value=0.0031 Score=45.86 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001255 1044 FLPALFEAFGNQSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1044 lip~l~~~l~D~~seVRkaAv~clv~i~~~ 1073 (1113)
++|.+.++++|.+++||.+|..|+..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999865
No 54
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.11 Score=63.83 Aligned_cols=194 Identities=15% Similarity=0.203 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh-----------------
Q 001255 897 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV----------------- 959 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~----------------- 959 (1113)
+..|+.|+.....+++...-. .++ ++....+.|.|+++.|...++.++.+||+.....
T Consensus 156 ~~irKKA~Lca~r~irK~P~l--~e~---f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~ 230 (866)
T KOG1062|consen 156 PYIRKKAALCAVRFIRKVPDL--VEH---FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQ 230 (866)
T ss_pred HHHHHHHHHHHHHHHHcCchH--HHH---hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887654321 122 2334566777899999998999998888862110
Q ss_pred ---------------hhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh---------hHHHHhhhhh-----
Q 001255 960 ---------------MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF---------RCLSVIVPLL----- 1010 (1113)
Q Consensus 960 ---------------~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~---------~~l~~l~~~l----- 1010 (1113)
-++|+-.-+..+|..+|-..+...+..-..|..++..+... .|+..|+.+.
T Consensus 231 l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~L 310 (866)
T KOG1062|consen 231 LTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGL 310 (866)
T ss_pred HhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchH
Confidence 25777777778888888766777777777888887765433 2444443332
Q ss_pred ------------ccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-----H
Q 001255 1011 ------------VTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI-----M 1073 (1113)
Q Consensus 1011 ------------~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~-----~ 1073 (1113)
.+.+.-++-.+|++|.++|. ..+..+++|= ..|++|+.|.|..+|+-|....-.+.. .
T Consensus 311 rvlainiLgkFL~n~d~NirYvaLn~L~r~V~-~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~ 385 (866)
T KOG1062|consen 311 RVLAINILGKFLLNRDNNIRYVALNMLLRVVQ-QDPTAVQRHR----STILECLKDPDVSIKRRALELSYALVNESNVRV 385 (866)
T ss_pred HHHHHHHHHHHhcCCccceeeeehhhHHhhhc-CCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH
Confidence 23333345566667777663 3335555655 468899999999999999987655542 1
Q ss_pred hhhhhHhhhhcCChhhHhhHHHHHHhh
Q 001255 1074 LGKAFLPYLERLNSTQLRLVTIYANRI 1100 (1113)
Q Consensus 1074 lGe~i~p~l~~L~~s~~kLl~~yi~R~ 1100 (1113)
+=+++..||..-++.-+..+-.+|.-.
T Consensus 386 mv~eLl~fL~~~d~~~k~~~as~I~~l 412 (866)
T KOG1062|consen 386 MVKELLEFLESSDEDFKADIASKIAEL 412 (866)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 224666788777655555555555443
No 55
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.52 E-value=0.066 Score=64.61 Aligned_cols=184 Identities=17% Similarity=0.203 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH--HHHHHHHHHHHh
Q 001255 898 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVT 975 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~--~~~~l~~ll~~~ 975 (1113)
++|...++-|..++.+. ....+..|+.|...|+.++.|..++||.+|+.+|..+=. ..-++- +-.++-.++ -
T Consensus 100 ~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~---d~~dee~~v~n~l~~li--q 173 (892)
T KOG2025|consen 100 KVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG---DPKDEECPVVNLLKDLI--Q 173 (892)
T ss_pred hHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc---CCCCCcccHHHHHHHHH--h
Confidence 68999997777666543 334466899999999999999999999999888877543 222211 222222222 2
Q ss_pred CCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCC
Q 001255 976 KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ 1055 (1113)
Q Consensus 976 ~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~ 1055 (1113)
.|+.++||++|..++- +-...+|++.+--+.-+...+....+ .++.+...--+ ....-+-.+-.+++|+
T Consensus 174 nDpS~EVRRaaLsnI~------vdnsTlp~IveRarDV~~anRrlvY~---r~lpkid~r~l--si~krv~LlewgLnDR 242 (892)
T KOG2025|consen 174 NDPSDEVRRAALSNIS------VDNSTLPCIVERARDVSGANRRLVYE---RCLPKIDLRSL--SIDKRVLLLEWGLNDR 242 (892)
T ss_pred cCCcHHHHHHHHHhhc------cCcccchhHHHHhhhhhHHHHHHHHH---Hhhhhhhhhhh--hHHHHHHHHHHhhhhh
Confidence 4999999999988764 22234555555444444444443332 22222211011 1122334578888999
Q ss_pred CHHHHHHHHHHHHHHHHHhhh-hhHhhhhcCChh-----hHhhHHHHHH
Q 001255 1056 SADVRKTVVFCLVDIYIMLGK-AFLPYLERLNST-----QLRLVTIYAN 1098 (1113)
Q Consensus 1056 ~seVRkaAv~clv~i~~~lGe-~i~p~l~~L~~s-----~~kLl~~yi~ 1098 (1113)
+-+||+|++..+..=|..+.+ .+.-.|..|+-+ -.+.|+..++
T Consensus 243 e~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 243 EFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred hhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 999999999988887777765 666666666433 3455555554
No 56
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.51 E-value=0.02 Score=54.71 Aligned_cols=110 Identities=17% Similarity=0.226 Sum_probs=83.7
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFN-QILTAVLEVLDDADSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~-~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
.++.++..|.+.+ |+.|..++..|..+..... ......+. .++..|.+.|.|.+..++..++.+|..|+...+..
T Consensus 8 ~i~~l~~~l~~~~---~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 8 GLPALVSLLSSSD---ENVQREAAWALSNLSAGNN-DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred ChHHHHHHHHcCC---HHHHHHHHHHHHHHhcCCH-HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 3677788787665 6899999999988775532 12222233 67788888999999999999999999999866544
Q ss_pred hhhHHH-HHHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 001255 960 MEDSVE-IVIEKLLHVTKDAVPKVSNEAEHCLTVVL 994 (1113)
Q Consensus 960 ~~~~~~-~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~ 994 (1113)
...+.. .+++.+++.+.+....+++.+..++..++
T Consensus 84 ~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 444433 47899999999988999999999888775
No 57
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.45 E-value=3.1 Score=49.70 Aligned_cols=200 Identities=15% Similarity=0.159 Sum_probs=120.6
Q ss_pred CChHHHHHHhhcCC----CCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 001255 880 PSIPQILHLMCNGN----DGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKN 955 (1113)
Q Consensus 880 ~~i~~lL~~l~~~~----~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~ 955 (1113)
|.+++||+.|...+ ++.|....+|-..|+-+.+-.+... ...++.-+..-+...+..-|+.|.-.++.+...
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i----~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g 396 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKI----MRPVLGFVEQNIRSESWANREAAVMAFGSVMHG 396 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHh----HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC
Confidence 34788998887632 2248888888777765543332111 222344444555556666788888888887763
Q ss_pred ch-hhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhc----Chhh-HHH---HhhhhhccCChhHHHHHHHHHH
Q 001255 956 QK-DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY----DPFR-CLS---VIVPLLVTEDEKTLVTCINCLT 1026 (1113)
Q Consensus 956 ~~-~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~----~p~~-~l~---~l~~~l~s~~~~~~~~al~~L~ 1026 (1113)
-- ....+++...+|.|++...|+.-.|.+.+..|+..|+.+. .|.. +.+ ...-+++. ..+.-..|---..
T Consensus 397 p~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~ 475 (858)
T COG5215 397 PCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKE 475 (858)
T ss_pred ccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHH
Confidence 22 2356778899999999999999999999999998888664 3321 221 22222221 1112222222223
Q ss_pred HHHHhhCHH------HHHhhhhhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhhhhhHhhhhc
Q 001255 1027 KLVGRLSQE------ELMAQLPSFLPALFEAFG--NQSADVRKTVVFCLVDIYIMLGKAFLPYLER 1084 (1113)
Q Consensus 1027 ~lie~~~~~------~l~~~L~~lip~l~~~l~--D~~seVRkaAv~clv~i~~~lGe~i~p~l~~ 1084 (1113)
.+++++++. .+.+..+.|+.+|+++-+ +.++..|.++..+|-.+.....+.+.+.+..
T Consensus 476 nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~ 541 (858)
T COG5215 476 NLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAG 541 (858)
T ss_pred hHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 455555532 233445556666665544 6677789998888877776666655554443
No 58
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.44 E-value=0.17 Score=57.90 Aligned_cols=191 Identities=18% Similarity=0.186 Sum_probs=125.8
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhC--c
Q 001255 486 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCR--K 563 (1113)
Q Consensus 486 ~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~--~ 563 (1113)
|.++|. .+.++.=+.|.+||+.|.+++...-. ..++......|++.+.+.++=...+=...++.+++.++..+| .
T Consensus 45 L~~~Id--~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAID--LLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHH--HHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 456776 56788899999999999999988543 345555566788888888876666777889999999988865 6
Q ss_pred chHHHHHHHHHHHHHHhcCCch--hhHHHHHHHHHHHHh--hCCccch------HHHHHHhh--c-cCC--------CHH
Q 001255 564 PFESYMERILPHVFSRLIDPKE--LVRQPCSTTLDIVSK--TYSVDSL------LPALLRSL--D-EQR--------SPK 622 (1113)
Q Consensus 564 ~~~~~l~~ll~~ll~klgD~K~--~vr~~a~~~L~~i~e--~~~~~~~------l~~l~~~~--~-~~k--------npk 622 (1113)
+-+.....+.|.|..-+-|.-. .+|.++..||-++.= ....+.+ |..++... . +.. ++.
T Consensus 122 ~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 122 DSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred cHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 6788888888888777766543 356677767766542 2222222 22222211 1 111 234
Q ss_pred HHHH-HHHHHHHHHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhc
Q 001255 623 AKLA-VIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHY 684 (1113)
Q Consensus 623 vk~~-~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~ 684 (1113)
+..+ +-.|.. .+. .++...+. ..+...++++..++.-.+.+||-+|..+|.-||...
T Consensus 202 l~~aAL~aW~l-Llt--~~~~~~~~--~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 202 LVAAALSAWAL-LLT--TLPDSKLE--DLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHHHH-HHh--cCCHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 4444 455642 232 12211111 335567888888888899999999999999999764
No 59
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=96.42 E-value=0.036 Score=55.68 Aligned_cols=107 Identities=17% Similarity=0.305 Sum_probs=76.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH--HH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ER 571 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l--~~ 571 (1113)
.+.+.||. ++..|-..|..... .-++...+|.++|...|.+|...+|.+|..++..+|..|+..+ +.
T Consensus 17 ~~~~~Dw~----~~l~icD~i~~~~~-------~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~ 85 (140)
T PF00790_consen 17 SLPSPDWS----LILEICDLINSSPD-------GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKE 85 (140)
T ss_dssp TSSS--HH----HHHHHHHHHHTSTT-------HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred CCCCCCHH----HHHHHHHHHHcCCc-------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHH
Confidence 35677884 55566777777532 4567899999999999999999999999999999998886443 22
Q ss_pred HHHHHHHHhcC--Cch--hhHHHHHHHHHHHHhhCCccchHHHH
Q 001255 572 ILPHVFSRLID--PKE--LVRQPCSTTLDIVSKTYSVDSLLPAL 611 (1113)
Q Consensus 572 ll~~ll~klgD--~K~--~vr~~a~~~L~~i~e~~~~~~~l~~l 611 (1113)
++..|..-+.+ ..+ .||+++.+.|..|.+.|..+.-+..+
T Consensus 86 fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i 129 (140)
T PF00790_consen 86 FLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLI 129 (140)
T ss_dssp HHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHH
T ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHH
Confidence 33333332321 122 29999999999999999766555444
No 60
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.41 E-value=0.18 Score=61.78 Aligned_cols=190 Identities=15% Similarity=0.168 Sum_probs=126.7
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHH
Q 001255 885 ILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSV 964 (1113)
Q Consensus 885 lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~ 964 (1113)
++..+.+.+. ++-..+.+-|..++...... .-..++...|...|...++.||..+|..|+.+++.-....+-..
T Consensus 43 lf~~L~~~~~---e~v~~~~~iL~~~l~~~~~~---~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 43 LFDCLNTSNR---EQVELICDILKRLLSALSPD---SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHhhcCh---HHHHHHHHHHHHHHhccCHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 4555555431 33333333444455544332 23566677788888899999999999999998875443232221
Q ss_pred -HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-hH-----HHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHH
Q 001255 965 -EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-RC-----LSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL 1037 (1113)
Q Consensus 965 -~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-~~-----l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l 1037 (1113)
..+++.|+.+++|....|.+.|..++..++..-.-. .+ +..|...+...+.-.+..+++++..+.. .+.+..
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~-~S~~~~ 195 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS-HSPEAA 195 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh-cCHHHH
Confidence 347888999999999999999999999998753221 23 4555665655355556566787777763 333333
Q ss_pred Hhhhh--hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhc
Q 001255 1038 MAQLP--SFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLER 1084 (1113)
Q Consensus 1038 ~~~L~--~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~ 1084 (1113)
..+. .+++.+.+.+.+.|.-|+.+|..++..+.. .+.-..||.+
T Consensus 196 -~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~--~~~g~~yL~~ 241 (503)
T PF10508_consen 196 -EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE--TPHGLQYLEQ 241 (503)
T ss_pred -HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc--ChhHHHHHHh
Confidence 2222 488999999999999999999999998875 3334455544
No 61
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.37 E-value=0.031 Score=58.38 Aligned_cols=133 Identities=21% Similarity=0.314 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHhch-hhhhhHHHHHHHHH-----------HH-HhCCChHHHHHHHHHHHHHHHhhcChh-------
Q 001255 941 VREVALSLINEMLKNQK-DVMEDSVEIVIEKL-----------LH-VTKDAVPKVSNEAEHCLTVVLSQYDPF------- 1000 (1113)
Q Consensus 941 vr~~aL~~L~~L~~~~~-~~~~~~~~~~l~~l-----------l~-~~~Ds~~~Vr~aa~~~l~~l~~~~~p~------- 1000 (1113)
||..||.+|+.|++... ..|-.|-..+||.- +. .+.|+...||.+|..++.++.....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 79999999999999844 44667777777765 33 346999999999999999988664321
Q ss_pred -------------------hHHHHhhhhhcc-CChhHHHHHHHHHHHHHHhhCHHHHH-hhhhhHHHHHHHHhcCCCHHH
Q 001255 1001 -------------------RCLSVIVPLLVT-EDEKTLVTCINCLTKLVGRLSQEELM-AQLPSFLPALFEAFGNQSADV 1059 (1113)
Q Consensus 1001 -------------------~~l~~l~~~l~s-~~~~~~~~al~~L~~lie~~~~~~l~-~~L~~lip~l~~~l~D~~seV 1059 (1113)
.+-..|.-.|+. ++.+....++|++..+++..+-+.+. +.++.++..+...+.+.|++|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 011122223332 35566778899999999887766664 357888899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 001255 1060 RKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1060 RkaAv~clv~i~~~ 1073 (1113)
|-++..||..+..+
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999877644
No 62
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.087 Score=61.50 Aligned_cols=214 Identities=14% Similarity=0.136 Sum_probs=148.4
Q ss_pred HHHHHHh-hcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Q 001255 883 PQILHLM-CNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 961 (1113)
Q Consensus 883 ~~lL~~l-~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~ 961 (1113)
..++.++ +......|.+|......+.++....-... ...++.++..+.....|++..+|..|+..|..++.-++....
T Consensus 216 ~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~-~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~ 294 (533)
T KOG2032|consen 216 GKILAQLLSSITSEKENGRITDIAFFAELKRPKELDK-TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVR 294 (533)
T ss_pred HHHHhhcccccchhcccchHHHHHHHHHHhCcccccc-cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHH
Confidence 3344443 33333447788888877777776543221 246888899999999999999999999999999998888888
Q ss_pred hHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhh-------hccCChhHHHHHHHHHHHHHHhhC
Q 001255 962 DSVEIVIEKLLHVT-KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPL-------LVTEDEKTLVTCINCLTKLVGRLS 1033 (1113)
Q Consensus 962 ~~~~~~l~~ll~~~-~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~-------l~s~~~~~~~~al~~L~~lie~~~ 1033 (1113)
.|...++..++-.+ .|..++|.-.+..|+..+.....-..+-+++.++ +.+.+.+.+..++-+.+.|..-.|
T Consensus 295 th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g 374 (533)
T KOG2032|consen 295 THKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG 374 (533)
T ss_pred HhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC
Confidence 88887777777655 4456889889999998888776666555554433 346677778888888888775554
Q ss_pred H---HH-HHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-hhhHhhhhcCChhhHhhHHHHHH
Q 001255 1034 Q---EE-LMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG-KAFLPYLERLNSTQLRLVTIYAN 1098 (1113)
Q Consensus 1034 ~---~~-l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG-e~i~p~l~~L~~s~~kLl~~yi~ 1098 (1113)
. +. ++.....+. .+.-.++|+++-|-+|....+-..|--++ ++..-|++.+-+..+-..+.+++
T Consensus 375 ~~~e~~Fte~v~k~~~-~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn 443 (533)
T KOG2032|consen 375 GGWEEFFTEQVKKRLA-PLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYN 443 (533)
T ss_pred CCchhhhHHHHHhccc-cceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHH
Confidence 3 11 112223333 34557899999999999998877777777 57777776544444434444443
No 63
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.19 E-value=0.14 Score=60.41 Aligned_cols=49 Identities=31% Similarity=0.397 Sum_probs=34.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHh-----hhhcCChhhHhhH
Q 001255 1043 SFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLP-----YLERLNSTQLRLV 1093 (1113)
Q Consensus 1043 ~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p-----~l~~L~~s~~kLl 1093 (1113)
.+.-.+.+|++|.|-+||.-|-+.+-.+- ..+++.| +|+.++...++|+
T Consensus 526 sv~~~lkRclnD~DdeVRdrAsf~l~~~~--~~da~~pl~~sd~~~dipsle~~l~ 579 (898)
T COG5240 526 SVENALKRCLNDQDDEVRDRASFLLRNMR--LSDACEPLFSSDELGDIPSLELELI 579 (898)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhhh--hhhhhhccccccccCCcchhHHhhh
Confidence 45567899999999999999999876554 3456665 4555655554443
No 64
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.18 E-value=0.0071 Score=50.11 Aligned_cols=54 Identities=24% Similarity=0.331 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001255 1015 EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVD 1069 (1113)
Q Consensus 1015 ~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~ 1069 (1113)
|+.+..|+..|+.+.+ ...+.+.++++.++|.|...+.|.+++||.+|..||-.
T Consensus 1 p~vR~~A~~aLg~l~~-~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAE-GCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTT-TTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhc-ccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 5667788888888554 34467778999999999999999999999999998854
No 65
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.15 E-value=0.87 Score=58.47 Aligned_cols=123 Identities=12% Similarity=0.215 Sum_probs=85.8
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 961 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~ 961 (1113)
+..|+.-|.|++ |.-|.+=.+.|.++.---+ |...=.-|++.|...|.|...-|...||..|.-|++. +.-=+
T Consensus 619 LshLiTfLNDkD---w~LR~aFfdsI~gvsi~VG---~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K 691 (1431)
T KOG1240|consen 619 LSHLITFLNDKD---WRLRGAFFDSIVGVSIFVG---WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL-GLLRK 691 (1431)
T ss_pred HHHHHHHhcCcc---HHHHHHHHhhccceEEEEe---eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh-cccch
Confidence 456677777764 6677777766554321111 2211233577788899999999999999999999983 21113
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh----hHHHHhhhhhc
Q 001255 962 DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF----RCLSVIVPLLV 1011 (1113)
Q Consensus 962 ~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~----~~l~~l~~~l~ 1011 (1113)
+++.-++..++=.+..+...||+++-..+-++...++.. ++.|+|-|+++
T Consensus 692 ~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 692 PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 455556666666688999999999999999998887765 36777777776
No 66
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.13 E-value=0.034 Score=50.49 Aligned_cols=85 Identities=25% Similarity=0.373 Sum_probs=67.3
Q ss_pred HHHHHHHh-CCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHH
Q 001255 968 IEKLLHVT-KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 1046 (1113)
Q Consensus 968 l~~ll~~~-~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip 1046 (1113)
|+.|++.+ .|+.+.||..|..++. .++...+++.|...+.+.++..+..|+..|+++ + -+..+|
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~-------~~~~~~ 65 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELLKDEDPMVRRAAARALGRI----G-------DPEAIP 65 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H-------HHHTHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C-------CHHHHH
Confidence 57788888 8999999988777776 456678999999999989999999888877765 2 244567
Q ss_pred HHHHHhcC-CCHHHHHHHHHHH
Q 001255 1047 ALFEAFGN-QSADVRKTVVFCL 1067 (1113)
Q Consensus 1047 ~l~~~l~D-~~seVRkaAv~cl 1067 (1113)
.+.+.+.| .+..||.+|..+|
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhc
Confidence 78888876 4566799998876
No 67
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.06 E-value=0.079 Score=67.54 Aligned_cols=176 Identities=15% Similarity=0.157 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHhcCCchhhH--HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhC
Q 001255 899 SKHGALQQLIKASVANDHSIWT--KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 976 (1113)
Q Consensus 899 ~R~~AL~~L~~~l~~~~~~~~~--~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~ 976 (1113)
+|..|..-|..+.+..+..... ++|.+.|..-+.-..|.|- .-...+.++..++-.|+..+++ +-..+|.++.+..
T Consensus 749 errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred HhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 4555655555544443322211 2333322222222233442 2224577788888778888888 7789999999999
Q ss_pred CChHHHHHHHHHHHHHHHhhcChh---hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhc
Q 001255 977 DAVPKVSNEAEHCLTVVLSQYDPF---RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG 1053 (1113)
Q Consensus 977 Ds~~~Vr~aa~~~l~~l~~~~~p~---~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~ 1053 (1113)
.....||.++..|+..+.+...-+ .|+..+.|++...+.-.+..+..++-.++.......+.+..+-++|.|..++.
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms 906 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS 906 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence 999999999999999998876554 36666677776443333333333333333344334555778889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhh
Q 001255 1054 NQSADVRKTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1054 D~~seVRkaAv~clv~i~~~lGe 1076 (1113)
|....||.+|..|+..+..+++.
T Consensus 907 d~~d~vR~aat~~fa~lip~~~l 929 (1549)
T KOG0392|consen 907 DQIDSVREAATKVFAKLIPLLPL 929 (1549)
T ss_pred cchHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999988873
No 68
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=96.02 E-value=0.13 Score=51.82 Aligned_cols=106 Identities=14% Similarity=0.206 Sum_probs=77.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH--HH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ER 571 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l--~~ 571 (1113)
.+...||. ....|-..|..... .-.+.+.+|.++|...|.+|+..+|.+|..++..||..|+..+ +.
T Consensus 12 ~l~~~dw~----~il~icD~I~~~~~-------~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~ 80 (144)
T cd03568 12 KLTSENWG----LILDVCDKVKSDEN-------GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRD 80 (144)
T ss_pred cCCCcCHH----HHHHHHHHHhcCCc-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHH
Confidence 35677884 44555555555322 3357788999999999999999999999999999999885333 23
Q ss_pred HHHHHHHHhcC-CchhhHHHHHHHHHHHHhhCCccchHHH
Q 001255 572 ILPHVFSRLID-PKELVRQPCSTTLDIVSKTYSVDSLLPA 610 (1113)
Q Consensus 572 ll~~ll~klgD-~K~~vr~~a~~~L~~i~e~~~~~~~l~~ 610 (1113)
++..|...+.+ ....|++++.+.+..|.+.|..+..+..
T Consensus 81 Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~ 120 (144)
T cd03568 81 FTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSL 120 (144)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHH
Confidence 44443333334 5667999999999999999987654433
No 69
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.94 E-value=0.87 Score=53.57 Aligned_cols=201 Identities=17% Similarity=0.317 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHHHHhcCCc----hhhHHhHHHHHHHHHHHhcC------C-CHHHHHHHHHHHHHHHHhch--hhh-hhH
Q 001255 898 TSKHGALQQLIKASVANDH----SIWTKYFNQILTAVLEVLDD------A-DSSVREVALSLINEMLKNQK--DVM-EDS 963 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~----~~~~~~f~~ll~~Ll~~L~D------~-n~~vr~~aL~~L~~L~~~~~--~~~-~~~ 963 (1113)
..|.+|...|.+.++..+. ....++++.++..+..=+.. . +..+..+||++|..++.+.. ..+ +.+
T Consensus 8 ~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~ 87 (372)
T PF12231_consen 8 SSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDF 87 (372)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHH
Confidence 5799999999999877642 22334455555544433322 2 56688899999999887543 223 334
Q ss_pred HHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHhhcChh--------hHHHHhhhhhcc-CChhHHHHHHHHHHHHHHhh
Q 001255 964 VEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLVT-EDEKTLVTCINCLTKLVGRL 1032 (1113)
Q Consensus 964 ~~~~l~~ll~~~~--Ds~~~Vr~aa~~~l~~l~~~~~p~--------~~l~~l~~~l~s-~~~~~~~~al~~L~~lie~~ 1032 (1113)
..-++-..++.+. ...|.|...+..|+.. +.+++. +++.++..+-.. ...-...+.+.++.+++++.
T Consensus 88 ~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~ 165 (372)
T PF12231_consen 88 ASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQF 165 (372)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHH
Confidence 4457777777774 4457888888887763 445543 233332222110 11223456778888999888
Q ss_pred CHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh--hhHhhh----hcCChhhHhhHHHHHHhhhc
Q 001255 1033 SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK--AFLPYL----ERLNSTQLRLVTIYANRISQ 1102 (1113)
Q Consensus 1033 ~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe--~i~p~l----~~L~~s~~kLl~~yi~R~~~ 1102 (1113)
+ +....+...-+|.++..+-+...++|..|..++..+-.++|. .+-+.+ ..-.... +++++|.+|..+
T Consensus 166 p-~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~L~~ 239 (372)
T PF12231_consen 166 P-QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG-KLIQLYCERLKE 239 (372)
T ss_pred H-HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc-cHHHHHHHHHHH
Confidence 7 444456676788999999999999999999999999999983 333333 2222233 889999887743
No 70
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.93 E-value=0.12 Score=58.65 Aligned_cols=178 Identities=12% Similarity=0.123 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHhc
Q 001255 502 ARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI 581 (1113)
Q Consensus 502 eR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ll~klg 581 (1113)
.=..|||-.+.|++.... .....++.-....|...|.-+..+|=-.+|+++...+...++.+.+.++.++..|+--|-
T Consensus 71 VH~KaLevY~~IF~~ig~--~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLe 148 (307)
T PF04118_consen 71 VHQKALEVYEYIFERIGP--DGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLE 148 (307)
T ss_pred HHHHHHHHHHHHHHhcCH--HHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccc
Confidence 345677777777766432 123356666777788888888889999999999998888888888999999999998888
Q ss_pred CCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhcc-----CCCC--CCChhhHHHH
Q 001255 582 DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAM-----NSEG--SGNLGILKLW 654 (1113)
Q Consensus 582 D~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~-----~~~~--~~~~~~~~~~ 654 (1113)
|...-+.+.+.+.|+.+.+.++.+.+...+.-.+. .||.+|..+|.|+...+.++.. ..++ ..-..+..+.
T Consensus 149 de~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii--~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ll 226 (307)
T PF04118_consen 149 DEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII--TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLL 226 (307)
T ss_pred cCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh--cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHH
Confidence 77777999999999999999999988888866554 7899999999999988876430 0000 0011345667
Q ss_pred HHhHccccCCCCHHHHHHHHHHHHHHHhh
Q 001255 655 LAKLTPLVHDKNTKLKEAAITCIISVYTH 683 (1113)
Q Consensus 655 l~~l~~~~~d~n~~VR~aA~~~L~~l~~~ 683 (1113)
+..+..+++|.|--|++.+-.+|..-+-+
T Consensus 227 v~al~~~L~D~~iLVqR~~LDlLl~~~PL 255 (307)
T PF04118_consen 227 VRALCACLEDENILVQRGFLDLLLSHFPL 255 (307)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHhCCC
Confidence 88888899999999999999999987644
No 71
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.81 E-value=0.22 Score=52.14 Aligned_cols=128 Identities=21% Similarity=0.304 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhh--cChh-hHHHHhhhhhccCC
Q 001255 938 DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ--YDPF-RCLSVIVPLLVTED 1014 (1113)
Q Consensus 938 n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~--~~p~-~~l~~l~~~l~s~~ 1014 (1113)
|+.||..++.++..|+.. +.+.++..++.+..++.|..+.||+.|..++..++.. ..+. .++..+.-.+...+
T Consensus 1 ~~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 577999999999999984 4455666678888999999999999999999988865 2222 23344445566777
Q ss_pred hhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcC-----CCHHHHHHHHHHHHH
Q 001255 1015 EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN-----QSADVRKTVVFCLVD 1069 (1113)
Q Consensus 1015 ~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D-----~~seVRkaAv~clv~ 1069 (1113)
...+..|..++..+.....++.+..++++++-.+..+..+ .+.+-|+.-...|..
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~ 136 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLD 136 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHH
Confidence 8888888888888888766677777777777666665543 344445544444433
No 72
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.39 Score=56.31 Aligned_cols=180 Identities=18% Similarity=0.144 Sum_probs=130.4
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHH
Q 001255 495 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILP 574 (1113)
Q Consensus 495 ~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~ 574 (1113)
..+.-|++|.-....+.++..+..- . -++.++.+...+.....||+-++-.+++..|+..+..++.....|...++.
T Consensus 226 ~ts~~~~~ritd~Af~ael~~~~~l--~-~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ld 302 (533)
T KOG2032|consen 226 ITSEKENGRITDIAFFAELKRPKEL--D-KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLD 302 (533)
T ss_pred cchhcccchHHHHHHHHHHhCcccc--c-ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHH
Confidence 4577899999999999998876321 1 114678888889999999999999999999999999998889999999999
Q ss_pred HHHHHhc-CCchhhHHHHHHHHHHHHhhCCccchHHHHHHhh------ccCCCHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 001255 575 HVFSRLI-DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSL------DEQRSPKAKLAVIEFAISSLNKHAMNSEGSGN 647 (1113)
Q Consensus 575 ~ll~klg-D~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~------~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~ 647 (1113)
.++--|= |....|.=.+.++|+.+.+....+.+.+.+..+. .+..++++|.+..--. ..|..+.-.+..
T Consensus 303 aii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lf-g~L~~l~g~~~e--- 378 (533)
T KOG2032|consen 303 AIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLF-GALAKLAGGGWE--- 378 (533)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHH-HHHHHHcCCCch---
Confidence 9999995 4445677788999999998777666655554433 2345789998876544 355555321111
Q ss_pred hhhHHHHHHhHcc---ccCCCCHHHHHHHHHHHHHHH
Q 001255 648 LGILKLWLAKLTP---LVHDKNTKLKEAAITCIISVY 681 (1113)
Q Consensus 648 ~~~~~~~l~~l~~---~~~d~n~~VR~aA~~~L~~l~ 681 (1113)
-..+.......++ .++|+||.|-+|-+..+-..|
T Consensus 379 ~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~ 415 (533)
T KOG2032|consen 379 EFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCY 415 (533)
T ss_pred hhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcC
Confidence 1222222223444 468999999888887776654
No 73
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.79 E-value=0.17 Score=52.60 Aligned_cols=126 Identities=10% Similarity=0.122 Sum_probs=94.1
Q ss_pred CChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---hc
Q 001255 880 PSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLK---NQ 956 (1113)
Q Consensus 880 ~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~---~~ 956 (1113)
+.++-.+.-|....+ .-|--|.+.+.+++..++...+-+.+-+|...|...|...|..|...+|.+|+.|+. ..
T Consensus 38 ~~Lpif~dGL~Et~~---Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 38 HYLPIFFDGLRETEH---PYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hHHHHHHhhhhccCc---cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 345555655555543 357778888888887755555567889999999999999999999999999999944 45
Q ss_pred hhhhhhHHHHHHHHHHHHhCC------------ChHHHHHHHHHHHHHHHhhcChhh--HHHHhhhh
Q 001255 957 KDVMEDSVEIVIEKLLHVTKD------------AVPKVSNEAEHCLTVVLSQYDPFR--CLSVIVPL 1009 (1113)
Q Consensus 957 ~~~~~~~~~~~l~~ll~~~~D------------s~~~Vr~aa~~~l~~l~~~~~p~~--~l~~l~~~ 1009 (1113)
|..+.+|...++|.+ +.+.+ ..+.+.+-.+++|..+....+++. .+++..|.
T Consensus 115 G~aLvPyyrqLLp~l-n~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~nIKy~IPT 180 (183)
T PF10274_consen 115 GEALVPYYRQLLPVL-NLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFINIKYMIPT 180 (183)
T ss_pred hHHHHHHHHHHHHHH-HHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHHHHHhCCC
Confidence 778999998887765 43332 347888999999999998888875 44554443
No 74
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.77 E-value=0.3 Score=57.93 Aligned_cols=202 Identities=13% Similarity=0.124 Sum_probs=127.3
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED 962 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~ 962 (1113)
..+|.-+..+. -+.|...|+-|.-+... -.+.-+.-|+.|+..|.+++.|..+.||..|+.+|..+-. +...=++
T Consensus 94 ~h~lRg~eskd---k~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe-~~~neen 168 (885)
T COG5218 94 YHLLRGTESKD---KKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQE-MELNEEN 168 (885)
T ss_pred HHHHhcccCcc---hhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-ccCChHH
Confidence 44555554443 26899998766544433 2233344688888889999999999999999988877543 2222344
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHH---HHHh
Q 001255 963 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQE---ELMA 1039 (1113)
Q Consensus 963 ~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~---~l~~ 1039 (1113)
+...+|..++ ..|+..+||++|.--+- +.. -..|++.+--..-+...+.+..+ .++.++|.- .+.+
T Consensus 169 ~~~n~l~~~v--qnDPS~EVRr~allni~--vdn----sT~p~IlERarDv~~anRr~vY~---r~Lp~iGd~~~lsi~k 237 (885)
T COG5218 169 RIVNLLKDIV--QNDPSDEVRRLALLNIS--VDN----STYPCILERARDVSGANRRMVYE---RCLPRIGDLKSLSIDK 237 (885)
T ss_pred HHHHHHHHHH--hcCcHHHHHHHHHHHee--eCC----CcchhHHHHhhhhhHHHHHHHHH---HHhhhhcchhhccccc
Confidence 4444333332 35999999998754332 211 23444444443333333332222 333344321 1222
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhHhhhhcCChhhHhhHHHHHHhhhccc
Q 001255 1040 QLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANRISQAR 1104 (1113)
Q Consensus 1040 ~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe-~i~p~l~~L~~s~~kLl~~yi~R~~~~r 1104 (1113)
++ . .+--++.|++-+||+|++.++..-|..--| .+.-.+..|+-+..+.+...|+..=+.|
T Consensus 238 ri---~-l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~F~~R 299 (885)
T COG5218 238 RI---L-LMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGVFEKR 299 (885)
T ss_pred ee---h-hhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHHHhhc
Confidence 22 1 577889999999999999999988876665 7888889998888888877787765544
No 75
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.77 E-value=0.017 Score=47.86 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 001255 940 SVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVV 993 (1113)
Q Consensus 940 ~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l 993 (1113)
.||..|+..|..|+...+..+.+|...+++.|+..+.|+...||.+|-.||..|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 589999999999888888889999999999999999999999999998887643
No 76
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=4.8 Score=50.13 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=74.3
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchH
Q 001255 487 SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFE 566 (1113)
Q Consensus 487 ~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~ 566 (1113)
-|+|. +..|.+.-++.=|-.++-=+|.+... -+--+...+.+=|.-+|.=|+.+||.+|+.++..
T Consensus 73 ieclK--Lias~~f~dKRiGYLaamLlLdE~qd-------vllLltNslknDL~s~nq~vVglAL~alg~i~s~------ 137 (866)
T KOG1062|consen 73 IECLK--LIASDNFLDKRIGYLAAMLLLDERQD-------LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP------ 137 (866)
T ss_pred hHHHH--HhcCCCchHHHHHHHHHHHHhccchH-------HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH------
Confidence 47888 88999999999998888888877432 1223455666667778888999999999877654
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhC
Q 001255 567 SYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTY 602 (1113)
Q Consensus 567 ~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~ 602 (1113)
.-++.+.|.+-+.+--.++-||.+|.-|+..+....
T Consensus 138 EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~ 173 (866)
T KOG1062|consen 138 EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV 173 (866)
T ss_pred HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 445667777777777788889988877766555433
No 77
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.69 E-value=0.17 Score=61.57 Aligned_cols=139 Identities=17% Similarity=0.241 Sum_probs=102.5
Q ss_pred HHHHHHHHHhchhhhhhH-HHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHH
Q 001255 946 LSLINEMLKNQKDVMEDS-VEIVIEKLLHVT--KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCI 1022 (1113)
Q Consensus 946 L~~L~~L~~~~~~~~~~~-~~~~l~~ll~~~--~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al 1022 (1113)
.++.+.|......--+.+ ...++|.|+..+ +|..+.+..-.-.+-+.+-..-=..+++|+|...+..-+-++|+.-|
T Consensus 272 ~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL 351 (690)
T KOG1243|consen 272 QKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLL 351 (690)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHH
Confidence 355555555444434444 556788888765 67666666666555554433321235899999999888888888778
Q ss_pred HHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-----hhHhhhhcCCh
Q 001255 1023 NCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-----AFLPYLERLNS 1087 (1113)
Q Consensus 1023 ~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe-----~i~p~l~~L~~ 1087 (1113)
..+.+.++++..+++. ..|.|.++.++.|+++.+|...+.||..+.-.+++ ++.+||..+-+
T Consensus 352 ~~i~~~i~~Lt~~~~~---d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~ 418 (690)
T KOG1243|consen 352 QYIEKYIDHLTKQILN---DQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQP 418 (690)
T ss_pred HhHHHHhhhcCHHhhc---chhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCc
Confidence 8888899998888774 67889999999999999999999999999888773 67788887754
No 78
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=95.67 E-value=0.14 Score=50.92 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=74.0
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH-H-HH
Q 001255 495 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM-E-RI 572 (1113)
Q Consensus 495 ~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l-~-~l 572 (1113)
+...||. +..+|-.+|..... .-.+.+.+|.++|+.+|.+|+..+|.+|..++..+|..|...+ . ..
T Consensus 13 ~~~~D~~----~il~icd~I~~~~~-------~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~f 81 (133)
T cd03561 13 LEEPDWA----LNLELCDLINLKPN-------GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEF 81 (133)
T ss_pred cCCccHH----HHHHHHHHHhCCCC-------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHH
Confidence 4567775 45555566655432 3457799999999999999999999999999999999884333 2 34
Q ss_pred HHHHHHHhcC---CchhhHHHHHHHHHHHHhhCCcc
Q 001255 573 LPHVFSRLID---PKELVRQPCSTTLDIVSKTYSVD 605 (1113)
Q Consensus 573 l~~ll~klgD---~K~~vr~~a~~~L~~i~e~~~~~ 605 (1113)
+..|+.-+.. ....||.++.+.+..|.+.|+.+
T Consensus 82 l~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 82 LLELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4443333322 35569999999999999999976
No 79
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.27 Score=62.31 Aligned_cols=210 Identities=20% Similarity=0.225 Sum_probs=129.2
Q ss_pred CcCCCChHHHHHHhhcCCCCChhHH----HHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHh-cCCCH-HHHHHHHHHH
Q 001255 876 TDAGPSIPQILHLMCNGNDGSPTSK----HGALQQLIKASVANDHSIWTKYFNQILTAVLEVL-DDADS-SVREVALSLI 949 (1113)
Q Consensus 876 ~d~~~~i~~lL~~l~~~~~~~~~~R----~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L-~D~n~-~vr~~aL~~L 949 (1113)
+|..+.+...|+++-+.... |..+ ..-|..+.++++.+......++-+..+.+|-..- .|.+. -+|..-.++.
T Consensus 206 ~D~~~~~~~Fl~~~l~~~s~-~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~ 284 (1133)
T KOG1943|consen 206 TDVKDLLLSFLDWLLDCPST-ETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLV 284 (1133)
T ss_pred ccHHHHHHHHHHHhhcccch-hhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHHHHHH
Confidence 45555567777776665543 4555 4566777777777765444455555555553332 33342 2444444444
Q ss_pred HHH---------------------HHhc-------------------hhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 001255 950 NEM---------------------LKNQ-------------------KDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHC 989 (1113)
Q Consensus 950 ~~L---------------------~~~~-------------------~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~ 989 (1113)
+.| +.++ +..+-.++|-++..|+..+.|....||..|...
T Consensus 285 QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg 364 (1133)
T KOG1943|consen 285 QRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKG 364 (1133)
T ss_pred HHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHH
Confidence 421 1111 001225788999999999999999999999999
Q ss_pred HHHHHhhcChhh---HHHHhhhhhc-cCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCC--------CH
Q 001255 990 LTVVLSQYDPFR---CLSVIVPLLV-TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ--------SA 1057 (1113)
Q Consensus 990 l~~l~~~~~p~~---~l~~l~~~l~-s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~--------~s 1057 (1113)
+..+....|++- ++.-+...+. -.++....+++=.|..|..+ | =.+...+.+++|.|.++++=. -.
T Consensus 365 ~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~r-G-lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~ 442 (1133)
T KOG1943|consen 365 LGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALR-G-LLLPSLLEDVVPLILKALHYDVRRGQHSVGQ 442 (1133)
T ss_pred HHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 999999998764 4444444332 11122223333344444421 1 011223567778877776533 34
Q ss_pred HHHHHHHHHHHHHHHHhh-hhhHhhhhcCChh
Q 001255 1058 DVRKTVVFCLVDIYIMLG-KAFLPYLERLNST 1088 (1113)
Q Consensus 1058 eVRkaAv~clv~i~~~lG-e~i~p~l~~L~~s 1088 (1113)
-||.+|-+.+|++++... .++.|++.+|...
T Consensus 443 ~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~ 474 (1133)
T KOG1943|consen 443 HVRDAACYVCWAFARAYSPSDLKPVLQSLASA 474 (1133)
T ss_pred chHHHHHHHHHHHHhcCChhhhhHHHHHHHHH
Confidence 699999999999999998 4899999887654
No 80
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.62 E-value=0.23 Score=50.01 Aligned_cols=105 Identities=13% Similarity=0.139 Sum_probs=74.1
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH--HHH
Q 001255 495 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ERI 572 (1113)
Q Consensus 495 ~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l--~~l 572 (1113)
+...||.. ...|-.+|..... .-.+.+.+|.++|...|.+|+..+|++|..++..||..|+..+ +.+
T Consensus 17 l~~~dw~~----ileicD~In~~~~-------~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~f 85 (142)
T cd03569 17 LGEPDLAS----ILEICDMIRSKDV-------QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREF 85 (142)
T ss_pred cCccCHHH----HHHHHHHHhCCCC-------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHH
Confidence 45667753 4444455544321 3457789999999999999999999999999999999885322 223
Q ss_pred HHHHHHHhc-CCchhhHHHHHHHHHHHHhhCCccchHHH
Q 001255 573 LPHVFSRLI-DPKELVRQPCSTTLDIVSKTYSVDSLLPA 610 (1113)
Q Consensus 573 l~~ll~klg-D~K~~vr~~a~~~L~~i~e~~~~~~~l~~ 610 (1113)
+..|..-+. .....|++++...+..|.+.|..+.-++.
T Consensus 86 l~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~ 124 (142)
T cd03569 86 MDELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQLKY 124 (142)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcccHH
Confidence 333332222 45667999999999999999987754333
No 81
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=95.62 E-value=0.17 Score=50.78 Aligned_cols=106 Identities=12% Similarity=0.290 Sum_probs=73.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHHHhhCcchHHHHH--
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLD-DPHHKVAQAALSTLADIIPSCRKPFESYME-- 570 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~-Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~-- 570 (1113)
.+...||.-=+ +|-..|.+... .-.+.+.+|.++|. ..|.+|+..+|.+|..++..||..|+..+.
T Consensus 13 ~l~~~dw~~il----eicD~In~~~~-------~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask 81 (141)
T cd03565 13 SLQSEDWGLNM----EICDIINETED-------GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKK 81 (141)
T ss_pred CCCCcCHHHHH----HHHHHHhCCCC-------cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 34566886444 34444444221 23467889999997 579999999999999999999999964332
Q ss_pred HHHHH-HHHHhc---CCchhhHHHHHHHHHHHHhhCCccchHHH
Q 001255 571 RILPH-VFSRLI---DPKELVRQPCSTTLDIVSKTYSVDSLLPA 610 (1113)
Q Consensus 571 ~ll~~-ll~klg---D~K~~vr~~a~~~L~~i~e~~~~~~~l~~ 610 (1113)
.++.. |.+.+. +....|+.++.+.+..|.+.|..+.-+..
T Consensus 82 ~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~ 125 (141)
T cd03565 82 DFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTG 125 (141)
T ss_pred HhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchH
Confidence 34444 333332 34457999999999999999987754443
No 82
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=95.44 E-value=0.11 Score=50.62 Aligned_cols=88 Identities=14% Similarity=0.193 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHH---HHHHHHhC---
Q 001255 903 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVI---EKLLHVTK--- 976 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l---~~ll~~~~--- 976 (1113)
.+++|.++..+.. ..|.+++..|.++|.|+++.|...+|.+|..|+..-...|..++..-+ -.+.+-.|
T Consensus 21 ~~~Eia~~t~~s~-----~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~D 95 (122)
T cd03572 21 LYEEIAKLTRKSV-----GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPD 95 (122)
T ss_pred HHHHHHHHHHcCH-----HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCC
Confidence 4555555554421 348899999999999999999999999999999987777776654333 33333223
Q ss_pred -----CChHHHHHHHHHHHHHHHh
Q 001255 977 -----DAVPKVSNEAEHCLTVVLS 995 (1113)
Q Consensus 977 -----Ds~~~Vr~aa~~~l~~l~~ 995 (1113)
+....||.+|.+++..|..
T Consensus 96 p~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 96 PLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cccCcchhHHHHHHHHHHHHHHhc
Confidence 3568899999999998764
No 83
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=95.37 E-value=0.29 Score=48.75 Aligned_cols=105 Identities=17% Similarity=0.271 Sum_probs=73.7
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH--HHH
Q 001255 495 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ERI 572 (1113)
Q Consensus 495 ~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l--~~l 572 (1113)
+...||. ....|-.+|..... .-.+.+.+|.++|..+|.+|+..+|.+|..++..||..|+..+ +.+
T Consensus 13 l~~~dw~----~~l~icD~i~~~~~-------~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~f 81 (133)
T smart00288 13 LLEEDWE----LILEICDLINSTPD-------GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEF 81 (133)
T ss_pred CCCcCHH----HHHHHHHHHhCCCc-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHH
Confidence 4567775 34444555555432 3456788999999999999999999999999999999995443 224
Q ss_pred HHHHHHHhcCC--chhhHHHHHHHHHHHHhhCCccchHHH
Q 001255 573 LPHVFSRLIDP--KELVRQPCSTTLDIVSKTYSVDSLLPA 610 (1113)
Q Consensus 573 l~~ll~klgD~--K~~vr~~a~~~L~~i~e~~~~~~~l~~ 610 (1113)
+..|...+.+. .+.|+.++.+.+..|.+.|..+.-++.
T Consensus 82 l~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~~~ 121 (133)
T smart00288 82 LNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDLSQ 121 (133)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCchH
Confidence 44444333322 223999999999999999975443433
No 84
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.33 E-value=0.092 Score=47.59 Aligned_cols=84 Identities=25% Similarity=0.362 Sum_probs=63.1
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHh
Q 001255 928 TAVLEVL-DDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVI 1006 (1113)
Q Consensus 928 ~~Ll~~L-~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l 1006 (1113)
..|++.| .|.+..+|..++.+|..+- -..+++.|++.+.|+...||.+|..++..+ +....++.|
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~~~~~~~L 67 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----GDPEAIPAL 67 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HHHHTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHH
Confidence 4577777 8899999999988888331 124688888888999999999999998865 456788888
Q ss_pred hhhhccCChh-HHHHHHHHH
Q 001255 1007 VPLLVTEDEK-TLVTCINCL 1025 (1113)
Q Consensus 1007 ~~~l~s~~~~-~~~~al~~L 1025 (1113)
...+.+.+.. .+..|++-|
T Consensus 68 ~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 68 IKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHhhc
Confidence 8888765444 466666654
No 85
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.16 E-value=10 Score=45.59 Aligned_cols=164 Identities=15% Similarity=0.166 Sum_probs=108.7
Q ss_pred HHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHH
Q 001255 907 LIKASVANDHSIWTKYFNQILTAVLEVLDDADSS-VREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNE 985 (1113)
Q Consensus 907 L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~-vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~a 985 (1113)
|..+|+.....+ .+.-+.|+..+++.|..+++. +-.-.+..+..|...++.+|+.|++.++|.+...+......|...
T Consensus 580 l~aiir~~~~~i-e~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~ 658 (858)
T COG5215 580 LEAIIRTRRRDI-EDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNS 658 (858)
T ss_pred HHHHHHhcCCCc-ccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHH
Confidence 344454443322 223455777778888766444 556678889999999999999999999999999998777788888
Q ss_pred HHHHHHHHHhhcChh------hHHHHhhhhhccCCh-----hHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcC
Q 001255 986 AEHCLTVVLSQYDPF------RCLSVIVPLLVTEDE-----KTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 1054 (1113)
Q Consensus 986 a~~~l~~l~~~~~p~------~~l~~l~~~l~s~~~-----~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D 1054 (1113)
|...+.-++...+.+ .+...|.+.|.+... |.. |.+.+-+.-.+|.+ ....|..+| .|.++...
T Consensus 659 avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPai---LSvFgDIAlaiga~-F~~YL~~im-~L~qqas~ 733 (858)
T COG5215 659 AVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAI---LSVFGDIALAIGAN-FESYLDMIM-MLFQQASE 733 (858)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHH---HHHHHHHHHHHhhh-HHHHHHHHH-HHHHHHhc
Confidence 777766666554432 356666666654322 222 44555555555533 345676666 45555544
Q ss_pred CCH--------HHHHHHHHHHHHHHHHhhh
Q 001255 1055 QSA--------DVRKTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1055 ~~s--------eVRkaAv~clv~i~~~lGe 1076 (1113)
.++ |-|++++..++..|--+|+
T Consensus 734 ~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~ 763 (858)
T COG5215 734 LDPHSDEVYVDDYRKNAVQLVNCAYVGIGD 763 (858)
T ss_pred cCCCCCceeHHHHHHHHHHHHHHHHHHhhh
Confidence 333 5799999998888888875
No 86
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=3.7 Score=53.20 Aligned_cols=182 Identities=14% Similarity=0.176 Sum_probs=131.7
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHH
Q 001255 496 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPH 575 (1113)
Q Consensus 496 ~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ 575 (1113)
.+++-+.++-+..-|..++.. +.....+.+.+..+...|..-+.++-+-+....|.+|..|+..++.++.+.+..++|-
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455778888999999998887 3333455577888888999999998888999999999999999987888888888998
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHH--hh---CCccchHHHHHHhhc----c--CCCHHHHHH-HHHHHHHHHhhhccCCC
Q 001255 576 VFSRLIDPKELVRQPCSTTLDIVS--KT---YSVDSLLPALLRSLD----E--QRSPKAKLA-VIEFAISSLNKHAMNSE 643 (1113)
Q Consensus 576 ll~klgD~K~~vr~~a~~~L~~i~--e~---~~~~~~l~~l~~~~~----~--~knpkvk~~-~L~~l~~~l~~~~~~~~ 643 (1113)
++-.+-|....-|.-+-+||-.++ .. ++.+.+..+|-.|+. . ...+.++.. ++.+ ...+.+| .
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai-~~il~e~----~ 817 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAI-THILQEF----K 817 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHH-HHHHHHH----h
Confidence 888888887778999999999888 32 343433344444432 1 134556655 3333 2344443 2
Q ss_pred CCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhh
Q 001255 644 GSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTH 683 (1113)
Q Consensus 644 ~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~ 683 (1113)
++.+..-+...+..+-.|+...+++++++|+..+..+-.-
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~ 857 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK 857 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc
Confidence 3344445556666677789999999999999998775433
No 87
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.02 E-value=0.37 Score=60.27 Aligned_cols=125 Identities=14% Similarity=0.158 Sum_probs=88.0
Q ss_pred hcCCCHHHHHHHHHHH-HHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhc-
Q 001255 934 LDDADSSVREVALSLI-NEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV- 1011 (1113)
Q Consensus 934 L~D~n~~vr~~aL~~L-~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~- 1011 (1113)
+.++|...|..|++-+ ..|.. | +....++|.++....-...++++-..-=+...++. +|+.++-.+..+++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~--G----~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~-~P~~~lLavNti~kD 100 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSL--G----EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKL-KPELALLAVNTIQKD 100 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhc--C----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhh
Confidence 5566666666555433 22221 2 33667888888877766678888877777666655 77776666655554
Q ss_pred --cCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1012 --TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1012 --s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
+.+.-+|-.||..|+.+ +-.+ .++.+++.|.+|++|+++.|||.|..|+..+|.
T Consensus 101 l~d~N~~iR~~AlR~ls~l----~~~e---l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ 156 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLL----RVKE---LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR 156 (757)
T ss_pred ccCCCHHHHHHHHHHHHhc----ChHH---HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh
Confidence 56777788888777653 2233 367788999999999999999999999999994
No 88
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.01 E-value=0.31 Score=51.02 Aligned_cols=133 Identities=20% Similarity=0.360 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHhc-CC---chhhHHhHHHH--------HHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh-------
Q 001255 898 TSKHGALQQLIKASVA-ND---HSIWTKYFNQI--------LTAVLEVLDDADSSVREVALSLINEMLKNQKD------- 958 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~-~~---~~~~~~~f~~l--------l~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~------- 958 (1113)
+.|..||.-|+.+++. .. +.+|...|-+- ...+.-.+.|.+..+|..|+.+|..|+.....
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4688999999988877 32 23454333222 12334456899999999999999999885431
Q ss_pred ------hhhhHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHhhcChhh--------HHHHhhhhhccCChh
Q 001255 959 ------VMEDSVEIVIEKLLHVT--------KDAVPKVSNEAEHCLTVVLSQYDPFR--------CLSVIVPLLVTEDEK 1016 (1113)
Q Consensus 959 ------~~~~~~~~~l~~ll~~~--------~Ds~~~Vr~aa~~~l~~l~~~~~p~~--------~l~~l~~~l~s~~~~ 1016 (1113)
.|-.|...+-..|.+.+ .+....+......|+..++.++|+.+ ++..+.+.+.+++..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 24444333333333222 36677888899999999999998874 566667777777777
Q ss_pred HHHHHHHHHHHHHH
Q 001255 1017 TLVTCINCLTKLVG 1030 (1113)
Q Consensus 1017 ~~~~al~~L~~lie 1030 (1113)
.++.++-+++.++.
T Consensus 161 v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 161 VRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHHc
Confidence 78888877777763
No 89
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=94.99 E-value=0.27 Score=47.53 Aligned_cols=98 Identities=11% Similarity=0.180 Sum_probs=74.3
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHH--H
Q 001255 495 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMER--I 572 (1113)
Q Consensus 495 ~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~--l 572 (1113)
..+.+|..=...+..|-.++.... .....+++.|.+++.++|.+|+..+|.+|..++..+|+.|..++.. +
T Consensus 9 T~~~~~~p~~~~i~~i~d~~~~~~-------~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~ 81 (115)
T cd00197 9 TSNENMGPDWPLIMEICDLINETN-------VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDF 81 (115)
T ss_pred cCCCCCCCCHHHHHHHHHHHHCCC-------ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHH
Confidence 345566666677888888886643 2456789999999999999999999999999999999999766532 3
Q ss_pred HHHHHH----H-hc-CCchhhHHHHHHHHHHHH
Q 001255 573 LPHVFS----R-LI-DPKELVRQPCSTTLDIVS 599 (1113)
Q Consensus 573 l~~ll~----k-lg-D~K~~vr~~a~~~L~~i~ 599 (1113)
+..++. + .| |.-..||.++.+++..|.
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 82 AVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 333332 2 24 456679999999999886
No 90
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.97 E-value=0.51 Score=55.93 Aligned_cols=116 Identities=14% Similarity=0.011 Sum_probs=82.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHh
Q 001255 927 LTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVI 1006 (1113)
Q Consensus 927 l~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l 1006 (1113)
+..|++.|.|.+..||..+..-|..+= .....+.|+..++|..+.||.++..++..... ...+.+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-----~~~~~L 152 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-----DPGPAL 152 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----ChHHHH
Confidence 566888888998888877655554321 11234556666788888999888866654221 235567
Q ss_pred hhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001255 1007 VPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1068 (1113)
Q Consensus 1007 ~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv 1068 (1113)
.+.+.+.++..+..++..|+++-. ...+|.|..++.|.+++||.+|+.++.
T Consensus 153 ~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 153 EAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGL 203 (410)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 778888888889999988887541 233455778899999999999999883
No 91
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.86 Score=60.45 Aligned_cols=194 Identities=18% Similarity=0.219 Sum_probs=137.5
Q ss_pred CCCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Q 001255 878 AGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK 957 (1113)
Q Consensus 878 ~~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~ 957 (1113)
.+..+..+++.|...+ ...+..||++|.+++...+.+....-+...+..+.+.+-|-+..||.+.-.++..+....+
T Consensus 39 ~dsel~~I~kkL~KkD---~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lk 115 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRD---ETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLK 115 (1312)
T ss_pred cCHHHHHHHHHHhccC---hHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 3445788899998776 3689999999999998877653222244455566777789999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh---------hcChhhHHHHhhhhhcc----------------
Q 001255 958 DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS---------QYDPFRCLSVIVPLLVT---------------- 1012 (1113)
Q Consensus 958 ~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~---------~~~p~~~l~~l~~~l~s---------------- 1012 (1113)
..+.+|++.++|..+-..-|..-.|..+|-...+.... .|.+ .++.++...+..
T Consensus 116 k~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~-~i~~~~~~~~~~~~~~slSd~~~~s~Ee 194 (1312)
T KOG0803|consen 116 KKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDP-EIFYLVTEILVKETPDSLSDLRTLSSEE 194 (1312)
T ss_pred HHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhH-HHHHHHHHHHhccCccccchhhhcchHH
Confidence 99999999999999999999988888888777754332 2222 244444444321
Q ss_pred ---CChhHHHHHHHHHHHHHHhhCH-HHHH---hhhhhH--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1013 ---EDEKTLVTCINCLTKLVGRLSQ-EELM---AQLPSF--LPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1013 ---~~~~~~~~al~~L~~lie~~~~-~~l~---~~L~~l--ip~l~~~l~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
+..+....++.++..++...+. +++. .....+ -..+-+-+.+..+.||-+...++..+...+-
T Consensus 195 ~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~ 266 (1312)
T KOG0803|consen 195 LESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDIL 266 (1312)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhH
Confidence 1224455778888888866654 3333 212221 2335556678999999999999887775553
No 92
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.39 Score=55.25 Aligned_cols=116 Identities=16% Similarity=0.257 Sum_probs=100.4
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch-hhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK-DVM 960 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~-~~~ 960 (1113)
+.+||.++.-+| .+.|++|+..|.+++.... .....+...++..+.+.+-|.+..||.....++..+.-.+. ...
T Consensus 60 lkeLl~qlkHhN---akvRkdal~glkd~l~s~p-~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~ 135 (393)
T KOG2149|consen 60 LKELLSQLKHHN---AKVRKDALNGLKDLLKSHP-AELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQ 135 (393)
T ss_pred HHHHHhhhcCch---HhhhHHHHHHHHHHHHhCh-HHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhh
Confidence 689999999998 5899999999999998843 34455788888899999999999999988888888666554 346
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR 1001 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~ 1001 (1113)
.++...+++.+.-++.+..+.|+..+..-+..++..|+|.-
T Consensus 136 sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 136 SPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred cchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 88999999999999999999999999999999999999863
No 93
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.51 E-value=0.8 Score=58.78 Aligned_cols=189 Identities=19% Similarity=0.219 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch----hhhhhHHHHHHHHHH
Q 001255 897 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK----DVMEDSVEIVIEKLL 972 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~----~~~~~~~~~~l~~ll 972 (1113)
...+.+||+-|+.+...-.-+ .-++++|+-++..+.|+...||..||.+|.+++.... ....-|.+.++|.|=
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDE---VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhH
Confidence 357888998877765443322 3488999999999999999999999999999987653 224468899999999
Q ss_pred HHhCC-ChHHHHHHHHHHHHHHHhhcChhhHHHHhh----h-hhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHH
Q 001255 973 HVTKD-AVPKVSNEAEHCLTVVLSQYDPFRCLSVIV----P-LLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 1046 (1113)
Q Consensus 973 ~~~~D-s~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~----~-~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip 1046 (1113)
+..-| +...||-+-..|+-.++...-- ++.... . ++..-+.. ...+.....+++.....+-.
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~r--Fle~~q~~~~~g~~n~~nse----------t~~~~~~~~~~~~L~~~V~~ 581 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYR--FLELTQELRQAGMLNDPNSE----------TAPEQNYNTELQALHHTVEQ 581 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHH--HHHHHHHHHhcccccCcccc----------cccccccchHHHHHHHHHHH
Confidence 99999 6777888888888877755322 111110 0 01111110 11112222333333334444
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhhh----h-hHhhhh-cCChhhHhhHHHHHHhh
Q 001255 1047 ALFEAFGNQSADVRKTVVFCLVDIYIMLGK----A-FLPYLE-RLNSTQLRLVTIYANRI 1100 (1113)
Q Consensus 1047 ~l~~~l~D~~seVRkaAv~clv~i~~~lGe----~-i~p~l~-~L~~s~~kLl~~yi~R~ 1100 (1113)
.+..-+.|.++-||.+=.+.+..+|.-||. | +.+||- =|++.+-.|=-.+++..
T Consensus 582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI 641 (1431)
T KOG1240|consen 582 MVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSI 641 (1431)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhc
Confidence 455566777777888777777777777772 3 556663 35666655555555443
No 94
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=0.72 Score=55.28 Aligned_cols=185 Identities=15% Similarity=0.218 Sum_probs=127.2
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCc-hhhHHhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhc-hh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDH-SIWTKYFNQILTAVLEVLDDADS-SVREVALSLINEMLKNQ-KD 958 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~-~~~~~~f~~ll~~Ll~~L~D~n~-~vr~~aL~~L~~L~~~~-~~ 958 (1113)
++-+++.+...++ ..|..|.-.|.+++.++.. .-.--..+ ++..|+..+...+. ..+..+..+|..||+.. ++
T Consensus 154 vp~fi~Ll~s~~~---~v~eQavWALgNIagds~~~Rd~vl~~g-~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 154 VPIFIQLLSSPSA---DVREQAVWALGNIAGDSPDCRDYVLSCG-ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred hHHHHHHhcCCcH---HHHHHHHHHHhccccCChHHHHHHHhhc-chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 5666777766653 6888999999988866531 11000122 23445556655443 34456889999999976 33
Q ss_pred hhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-------hHHHHhhhhhccCChhHHHHHHHHHHHHHHh
Q 001255 959 VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGR 1031 (1113)
Q Consensus 959 ~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-------~~l~~l~~~l~s~~~~~~~~al~~L~~lie~ 1031 (1113)
+--..+..+||.|+..+.+....|...|--++..+....+.. .+++.|.+.|...+.++...||..++.++.
T Consensus 230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt- 308 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT- 308 (514)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee-
Confidence 333567789999999999988999999988888888663322 267777888888888888889999998663
Q ss_pred hCHHHHHhh--hhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Q 001255 1032 LSQEELMAQ--LPSFLPALFEAFG-NQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1032 ~~~~~l~~~--L~~lip~l~~~l~-D~~seVRkaAv~clv~i~~ 1072 (1113)
|.+..... -..++|.+...+. .....+||.|...+..|..
T Consensus 309 -G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 309 -GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred -ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 22222111 2445677777777 5666699999999998765
No 95
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.40 E-value=1 Score=51.27 Aligned_cols=170 Identities=11% Similarity=0.047 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCC
Q 001255 899 SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDA 978 (1113)
Q Consensus 899 ~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds 978 (1113)
++..||+-..-+...-+.....+++.-.+..|+..+.....+||-.-|++++...-.++..+.+.+..+|..++-.+-|.
T Consensus 71 VH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede 150 (307)
T PF04118_consen 71 VHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDE 150 (307)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccC
Confidence 56677776666666656555666777778889999988888899999999999887888888889999999999999988
Q ss_pred hHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhC-------H----HHHHhhhhhHHHH
Q 001255 979 VPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLS-------Q----EELMAQLPSFLPA 1047 (1113)
Q Consensus 979 ~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~-------~----~~l~~~L~~lip~ 1047 (1113)
..++-+.+...++.+...++...+...+--.+-+ ....|..|+.++..-..... . ..+.+....++.+
T Consensus 151 ~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~-sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~a 229 (307)
T PF04118_consen 151 GSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT-SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRA 229 (307)
T ss_pred CchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc-CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHH
Confidence 9999999999999999999988666655444432 23457778887765443322 1 1122334568899
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH
Q 001255 1048 LFEAFGNQSADVRKTVVFCLVD 1069 (1113)
Q Consensus 1048 l~~~l~D~~seVRkaAv~clv~ 1069 (1113)
+..+++|.+-=|++.+.+.|+.
T Consensus 230 l~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 230 LCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred HHHHhCCchHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 96
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.37 E-value=0.55 Score=56.68 Aligned_cols=176 Identities=20% Similarity=0.230 Sum_probs=116.4
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcC--C---chhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVAN--D---HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK 957 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~--~---~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~ 957 (1113)
....+.|.|.++ ..|++|++-+.=.-+-. . ...-.+..+..+..+...+.|-...||..|.+.|+.+-+...
T Consensus 237 ~~A~~~lsD~~e---~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe 313 (823)
T KOG2259|consen 237 SRAVKHLSDDYE---DVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE 313 (823)
T ss_pred HHHHHHhcchHH---HHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH
Confidence 344566666663 68999987654322111 1 111123566777778888889888888888776665433211
Q ss_pred hhhhhH----------------------------------------------HHHHH-----HHHHHHhCCChHHHHHHH
Q 001255 958 DVMEDS----------------------------------------------VEIVI-----EKLLHVTKDAVPKVSNEA 986 (1113)
Q Consensus 958 ~~~~~~----------------------------------------------~~~~l-----~~ll~~~~Ds~~~Vr~aa 986 (1113)
.-+.+- .+.+| -.+++.+-|-.-+||++|
T Consensus 314 e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AA 393 (823)
T KOG2259|consen 314 EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAA 393 (823)
T ss_pred HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHH
Confidence 100000 11111 234455567788999999
Q ss_pred HHHHHHHHhhcC--hhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHH
Q 001255 987 EHCLTVVLSQYD--PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVV 1064 (1113)
Q Consensus 987 ~~~l~~l~~~~~--p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv 1064 (1113)
-..+-.++..-| +.+++.+|..++...-.-.++-|+..|+.++.++.-. .+.++.+..++.|+..+||.+..
T Consensus 394 V~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~------eeql~~il~~L~D~s~dvRe~l~ 467 (823)
T KOG2259|consen 394 VASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIR------EEQLRQILESLEDRSVDVREALR 467 (823)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheec------HHHHHHHHHHHHhcCHHHHHHHH
Confidence 999998887644 3579999999998776677888999999988774322 23457889999999999999987
Q ss_pred HHH
Q 001255 1065 FCL 1067 (1113)
Q Consensus 1065 ~cl 1067 (1113)
..|
T Consensus 468 elL 470 (823)
T KOG2259|consen 468 ELL 470 (823)
T ss_pred HHH
Confidence 643
No 97
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=1.1 Score=59.19 Aligned_cols=183 Identities=17% Similarity=0.170 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHH------------------HHHHHHHHHHHHHHhch--
Q 001255 898 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSS------------------VREVALSLINEMLKNQK-- 957 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~------------------vr~~aL~~L~~L~~~~~-- 957 (1113)
.+|.-.+..+...+.+.-.....++|+.++......|.-.|.. .+..+++++..++..--
T Consensus 1409 ~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~L~k~n~s~~~~~~~~~~~~~r~~~~~~~Lvl~cl~~~~~~Dt~~ 1488 (1621)
T KOG1837|consen 1409 LERLISFYHFADYLQESLKSIVTPYFGYLLEPRVILLKKINASKHRWFWLLPVNQSRKPLLLGTLVLNCLKDLFLFDTIE 1488 (1621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHhhhhhH
Confidence 4677777788887877655556788998888755544322211 22345556655554221
Q ss_pred -----hhhhhHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhc---cCChhHHHHHHHHHHH
Q 001255 958 -----DVMEDSVEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV---TEDEKTLVTCINCLTK 1027 (1113)
Q Consensus 958 -----~~~~~~~~~~l~~ll~~~~--Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~---s~~~~~~~~al~~L~~ 1027 (1113)
.+++--...++..+++... -..+.|...+..|+-.+.-. .++...|++..+|. +..-+.+..||-.+..
T Consensus 1489 ~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~~li~~i~~~~~a-~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~ 1567 (1621)
T KOG1837|consen 1489 SFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSKLLIAEIASDSVA-DKDDLKPLNQKILKKTRSSSRKARYLAIIQVKL 1567 (1621)
T ss_pred HHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHHHHHHHHHhhccC-ChhhhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1111112234444444222 23445666666666665544 34347777777775 2344678889999999
Q ss_pred HHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhh
Q 001255 1028 LVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYL 1082 (1113)
Q Consensus 1028 lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l 1082 (1113)
+++++|. ....+||.++|.|.+-++|-+-+|-..++..+-.+=.++||.++.|+
T Consensus 1568 l~~~lge-~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1568 LYTKLGE-NVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred HHHHhcc-hhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 9999994 44478999999999999999999999999988888889999888774
No 98
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=1.6 Score=53.37 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=52.6
Q ss_pred CChHHHHHHhhcCCCCChhHHHHHHHHHHHHH-hcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh
Q 001255 880 PSIPQILHLMCNGNDGSPTSKHGALQQLIKAS-VANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD 958 (1113)
Q Consensus 880 ~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l-~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~ 958 (1113)
|+-++++..|+... +..|+.|+--|-++. +.. +.+.++|. -|.+.|.|++++|.-.|..++-+|++..+.
T Consensus 144 DLa~Dv~tLL~ssk---pYvRKkAIl~lykvFLkYP--eAlr~~Fp----rL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 144 DLADDVFTLLNSSK---PYVRKKAILLLYKVFLKYP--EALRPCFP----RLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHhhh--HhHhhhHH----HHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 34677888887654 578999988877754 332 22234444 488899999999999999999999998764
Q ss_pred h
Q 001255 959 V 959 (1113)
Q Consensus 959 ~ 959 (1113)
.
T Consensus 215 n 215 (877)
T KOG1059|consen 215 N 215 (877)
T ss_pred c
Confidence 3
No 99
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.27 E-value=0.96 Score=59.38 Aligned_cols=149 Identities=13% Similarity=0.209 Sum_probs=106.9
Q ss_pred hHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcC
Q 001255 919 WTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD 998 (1113)
Q Consensus 919 ~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~ 998 (1113)
+...|+-.|..++..|+.....+|..||++|..|...-+.-. .-+.+...+..++-|+...||+||.+.+...+-. .
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~-~ 886 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS-I 886 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc-c
Confidence 346788888888888986667799999999999998533211 1223455666678899999999999999877754 4
Q ss_pred hhhHHHHh---hhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001255 999 PFRCLSVI---VPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 999 p~~~l~~l---~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~ 1073 (1113)
++....|- ...+....--.|-.+|+.|..+-+..+.-. ..++++--++.-++|.+..|.|-+...+..+|+.
T Consensus 887 ~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~---~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 887 PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFS---KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChh---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 54444443 344433334455566999998887776322 2456666788889999999999999998888853
No 100
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.21 E-value=0.58 Score=53.27 Aligned_cols=128 Identities=19% Similarity=0.278 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhchhhhhh--HHHHHHHHHH-HHhCCChHHHHHHHHHHHHHHHhhcC--hhhHHHHhhhhhccCChhHH
Q 001255 944 VALSLINEMLKNQKDVMED--SVEIVIEKLL-HVTKDAVPKVSNEAEHCLTVVLSQYD--PFRCLSVIVPLLVTEDEKTL 1018 (1113)
Q Consensus 944 ~aL~~L~~L~~~~~~~~~~--~~~~~l~~ll-~~~~Ds~~~Vr~aa~~~l~~l~~~~~--p~~~l~~l~~~l~s~~~~~~ 1018 (1113)
++|.+++.|+++....+.+ .++.++..++ -++......||+.|..|+...+-.-. ....++++...++.++...+
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 4788999999987766665 3457777777 56777778999999999987764432 23466667777766677888
Q ss_pred HHHHHHHHHHHHhhCHHHHHhhh--------hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1019 VTCINCLTKLVGRLSQEELMAQL--------PSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1019 ~~al~~L~~lie~~~~~~l~~~L--------~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
..|++.+.-++-.+|.+.+.... ..++..+.+.+.+.+++||..|+..+..+.
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 89999999999889977664433 467888999999999999999999887755
No 101
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.94 E-value=0.41 Score=48.31 Aligned_cols=92 Identities=14% Similarity=0.234 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH--HHHHHHHHHHHhCC-Ch
Q 001255 903 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTKD-AV 979 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~--~~~~l~~ll~~~~D-s~ 979 (1113)
..-+|-+.|+.... .=++.+.+|.++|...|+.+...||.+|..++++-|..|... -+-|+..|...+.+ ..
T Consensus 20 ~il~icD~I~~~~~-----~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~ 94 (144)
T cd03568 20 LILDVCDKVKSDEN-----GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVH 94 (144)
T ss_pred HHHHHHHHHhcCCc-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCC
Confidence 34444455554321 235668889999999999999999999999999999988754 34677777777776 68
Q ss_pred HHHHHHHHHHHHHHHhhcCh
Q 001255 980 PKVSNEAEHCLTVVLSQYDP 999 (1113)
Q Consensus 980 ~~Vr~aa~~~l~~l~~~~~p 999 (1113)
..|++.+...+..|...++-
T Consensus 95 ~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 95 PTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 89999999999999998864
No 102
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.84 E-value=0.67 Score=46.12 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH-HH-HHHHHHHHHhCC---
Q 001255 903 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS-VE-IVIEKLLHVTKD--- 977 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~-~~-~~l~~ll~~~~D--- 977 (1113)
+..+|-++|+... .+=++.+..|.+.|...|+.+...||.+|..++++.|..|... +. -++..++..+.+
T Consensus 20 ~il~icd~I~~~~-----~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~ 94 (133)
T cd03561 20 LNLELCDLINLKP-----NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPK 94 (133)
T ss_pred HHHHHHHHHhCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCC
Confidence 5556666676552 2345668889999999999999999999999999999988654 33 566677666654
Q ss_pred ChHHHHHHHHHHHHHHHhhcChh
Q 001255 978 AVPKVSNEAEHCLTVVLSQYDPF 1000 (1113)
Q Consensus 978 s~~~Vr~aa~~~l~~l~~~~~p~ 1000 (1113)
....|++.+.+.+..|...++..
T Consensus 95 ~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 95 YDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCC
Confidence 46899999999999999998764
No 103
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=93.80 E-value=2 Score=47.58 Aligned_cols=186 Identities=21% Similarity=0.273 Sum_probs=114.0
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcC-CchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN-DHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~-~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
+..|+..|...++ +..+..++-.+....... +...+ ..+|. +..+...|.++++.+++.||..|..|...-. .
T Consensus 14 l~~Ll~lL~~t~d--p~i~e~al~al~n~aaf~~nq~~I-r~~Gg-i~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e--n 87 (254)
T PF04826_consen 14 LQKLLCLLESTED--PFIQEKALIALGNSAAFPFNQDII-RDLGG-ISLIGSLLNDPNPSVREKALNALNNLSVNDE--N 87 (254)
T ss_pred HHHHHHHHhcCCC--hHHHHHHHHHHHhhccChhHHHHH-HHcCC-HHHHHHHcCCCChHHHHHHHHHHHhcCCChh--h
Confidence 5778888876654 456777776665532111 11111 12333 5667888899999999999999998866432 2
Q ss_pred hhHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHhhc--Ch--hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhC-
Q 001255 961 EDSVEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVLSQY--DP--FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLS- 1033 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~--Ds~~~Vr~aa~~~l~~l~~~~--~p--~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~- 1033 (1113)
...++..++.+++... .....+..++..+|..+.-.- +. ...++.+.+.+.+++..++.-++++|..|.+.-.
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~ 167 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM 167 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH
Confidence 2233444555554332 224578888888887664211 11 2367777778888888888888998888775432
Q ss_pred -HHHHHhhhhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhh
Q 001255 1034 -QEELMAQLPSFLPALFEAFGN-QSADVRKTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1034 -~~~l~~~L~~lip~l~~~l~D-~~seVRkaAv~clv~i~~~lGe 1076 (1113)
.+-+. ......+..-++. ...++---++..+..|..++..
T Consensus 168 ~~~Ll~---~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 168 TRELLS---AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred HHHHHh---ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 11221 1233445555554 4677777777777777777764
No 104
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=93.78 E-value=1.6 Score=43.65 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH--HHHHHHHHHHHhC---
Q 001255 902 GALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTK--- 976 (1113)
Q Consensus 902 ~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~--~~~~l~~ll~~~~--- 976 (1113)
++..+|-+.|+.... .=.+.+.+|.++|...|+.+...||.+|..+.++-|..|... -.-|+..++..+.
T Consensus 20 ~~ileicD~In~~~~-----~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~ 94 (139)
T cd03567 20 EAIQAFCEQINKEPE-----GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKY 94 (139)
T ss_pred HHHHHHHHHHHcCCc-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhcccc
Confidence 356666666765431 134568889999999999999999999999999999998654 2457777777664
Q ss_pred ---CChHHHHHHHHHHHHHHHhhcCh
Q 001255 977 ---DAVPKVSNEAEHCLTVVLSQYDP 999 (1113)
Q Consensus 977 ---Ds~~~Vr~aa~~~l~~l~~~~~p 999 (1113)
.....|++.+...+..|...++-
T Consensus 95 ~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 95 LGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 25689999999999999998863
No 105
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=15 Score=45.82 Aligned_cols=105 Identities=17% Similarity=0.125 Sum_probs=75.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCc-chHHHHHHH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK-PFESYMERI 572 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~-~~~~~l~~l 572 (1113)
++.+.+=-+|+.+...+.++-.-.... .+-.-+++.|..++.|+|.-|+..++..|.++...+.. ..-.....+
T Consensus 129 ~l~d~~~yvRktaa~~vakl~~~~~~~-----~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~ 203 (734)
T KOG1061|consen 129 CLKDDDPYVRKTAAVCVAKLFDIDPDL-----VEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQL 203 (734)
T ss_pred hccCCChhHHHHHHHHHHHhhcCChhh-----ccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHH
Confidence 467888888999988888877655432 12234889999999999999999999999999998864 334555566
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccc
Q 001255 573 LPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDS 606 (1113)
Q Consensus 573 l~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~ 606 (1113)
+.++++++.+--++-|-.++++| .+.++.+.
T Consensus 204 ~~~lL~al~ec~EW~qi~IL~~l---~~y~p~d~ 234 (734)
T KOG1061|consen 204 INKLLEALNECTEWGQIFILDCL---AEYVPKDS 234 (734)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHH---HhcCCCCc
Confidence 77777777666666555555544 45555544
No 106
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=93.71 E-value=0.97 Score=43.60 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHH--HHHHHHHH-----
Q 001255 901 HGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVE--IVIEKLLH----- 973 (1113)
Q Consensus 901 ~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~--~~l~~ll~----- 973 (1113)
...+.+|..++.+.. ..+..++..|.++|.+.|..+...||.+|..++++-|.+|..++. .++..++.
T Consensus 18 ~~~i~~i~d~~~~~~-----~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~ 92 (115)
T cd00197 18 WPLIMEICDLINETN-----VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSK 92 (115)
T ss_pred HHHHHHHHHHHHCCC-----ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccc
Confidence 356777777776542 357889999999999999999999999999999999998876532 34444432
Q ss_pred Hh-CCChHHHHHHHHHHHHHHH
Q 001255 974 VT-KDAVPKVSNEAEHCLTVVL 994 (1113)
Q Consensus 974 ~~-~Ds~~~Vr~aa~~~l~~l~ 994 (1113)
.. .+....||+.+.+.+..|+
T Consensus 93 ~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 93 LLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred cccCCCChHHHHHHHHHHHHHh
Confidence 12 2567899999999999986
No 107
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.56 E-value=3.2 Score=49.66 Aligned_cols=126 Identities=19% Similarity=0.297 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch--------h----hh-hhHHHHHHHHHHHHhCCChHHHHHHHHH
Q 001255 922 YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK--------D----VM-EDSVEIVIEKLLHVTKDAVPKVSNEAEH 988 (1113)
Q Consensus 922 ~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~--------~----~~-~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~ 988 (1113)
....++..|+..|.| ..+...+-+.+..|+.... . -+ ..++..++|++++.+++....++..-..
T Consensus 268 ~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ 345 (415)
T PF12460_consen 268 LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLT 345 (415)
T ss_pred hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHH
Confidence 355666677778877 3344444455555554311 1 12 3578899999999999988889999999
Q ss_pred HHHHHHhhcChh-------hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHH
Q 001255 989 CLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFE 1050 (1113)
Q Consensus 989 ~l~~l~~~~~p~-------~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~ 1050 (1113)
|+-.+++++|.. .++|.|...+...+...+..+++.|..+++.- ++.+.+|+..++|.+.+
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHh
Confidence 999999999875 46777777776677778889999999998766 57788899999999875
No 108
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=93.54 E-value=1.1 Score=44.93 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH--HHHHHHHHHHHhCC--
Q 001255 902 GALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTKD-- 977 (1113)
Q Consensus 902 ~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~--~~~~l~~ll~~~~D-- 977 (1113)
++.-.|-+.|+... ..-++.+..|.++|...|+.+...||.+|..++++.|..|... -..|+..+...+.+
T Consensus 24 ~~~l~icD~i~~~~-----~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~ 98 (140)
T PF00790_consen 24 SLILEICDLINSSP-----DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKK 98 (140)
T ss_dssp HHHHHHHHHHHTST-----THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCC
Confidence 45556777777762 2346778899999999999999999999999999999888654 23466666554442
Q ss_pred ChHH--HHHHHHHHHHHHHhhcChh
Q 001255 978 AVPK--VSNEAEHCLTVVLSQYDPF 1000 (1113)
Q Consensus 978 s~~~--Vr~aa~~~l~~l~~~~~p~ 1000 (1113)
.... |++.+.+.+..|...++..
T Consensus 99 ~~~~~~Vk~k~l~ll~~W~~~f~~~ 123 (140)
T PF00790_consen 99 TDPETPVKEKILELLQEWAEAFKSD 123 (140)
T ss_dssp THHHSHHHHHHHHHHHHHHHHTTTS
T ss_pred CCchhHHHHHHHHHHHHHHHHHCCC
Confidence 2233 9999999999999998543
No 109
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.48 E-value=0.5 Score=43.77 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=59.3
Q ss_pred hhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhh
Q 001255 1008 PLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPY 1081 (1113)
Q Consensus 1008 ~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~ 1081 (1113)
..+.+...|.+..++-+|.++++... .....++.++..+...+.|.|+-|=-+|+++++++....++++.|.
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 34445567899999999999998876 2223467788889999999999999999999999999998877765
No 110
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.44 E-value=2.4 Score=53.02 Aligned_cols=186 Identities=17% Similarity=0.129 Sum_probs=114.7
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED 962 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~ 962 (1113)
.+.+..+.|.- ...|..||..|..+++.-.... -..-..++...++.|+|.++-|=-.|.+.+..||. -
T Consensus 730 qeai~sl~d~q---vpik~~gL~~l~~l~e~r~~~~-~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce-------v 798 (982)
T KOG4653|consen 730 QEAISSLHDDQ---VPIKGYGLQMLRHLIEKRKKAT-LIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE-------V 798 (982)
T ss_pred HHHHHHhcCCc---ccchHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH-------h
Confidence 44455554432 4689999999999998432211 12345678888999999988776666665556664 3
Q ss_pred HHHHHHHHHHHHhCCChH-----HHHHHHHHHHHHHHhhcChh------hHHHHhhhhhccCChhHHHHHHHHHHHHHHh
Q 001255 963 SVEIVIEKLLHVTKDAVP-----KVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGR 1031 (1113)
Q Consensus 963 ~~~~~l~~ll~~~~Ds~~-----~Vr~aa~~~l~~l~~~~~p~------~~l~~l~~~l~s~~~~~~~~al~~L~~lie~ 1031 (1113)
|=+.++|.+++-+...++ .+-.-++..++. +...++- .++...+.+++.-+...|+.++..++.+...
T Consensus 799 y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~-~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 799 YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKV-AQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred cchhhHHHHHHHHHhcccCCCccceehHHHHHHHH-HHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 667789999986653322 222223333333 3332321 2333334445444555677777777766644
Q ss_pred hC---HHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhh
Q 001255 1032 LS---QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLE 1083 (1113)
Q Consensus 1032 ~~---~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~ 1083 (1113)
.. .+.+.+.+..++ .-...|...-||.+|+..+..+-.-.|+++.|.+.
T Consensus 878 ~a~~vsd~~~ev~~~Il---~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr 929 (982)
T KOG4653|consen 878 LAFQVSDFFHEVLQLIL---SLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILR 929 (982)
T ss_pred HhhhhhHHHHHHHHHHH---HHHccCCchhhHHHHHHHHHHHHhccchhhHHHHH
Confidence 43 344444333332 22335999999999999999999989988888664
No 111
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=93.34 E-value=0.28 Score=61.12 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=90.9
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHhchh-
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDAD---SSVREVALSLINEMLKNQKD- 958 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n---~~vr~~aL~~L~~L~~~~~~- 958 (1113)
+=||+.|+-.+ ...|..++.-|.-.+.+... ..+++.+.+.+.++..-.|.+ ..||+.||.+|..|.+.++.
T Consensus 912 PLLLq~Ls~~D---~~v~vstl~~i~~~l~~~~t-L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~ 987 (1030)
T KOG1967|consen 912 PLLLQALSMPD---VIVRVSTLRTIPMLLTESET-LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK 987 (1030)
T ss_pred HHHHHhcCCCc---cchhhhHhhhhhHHHHhccc-cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc
Confidence 45555555443 47899999998888877764 446789999999888776654 55999999999999998874
Q ss_pred hhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhc
Q 001255 959 VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY 997 (1113)
Q Consensus 959 ~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~ 997 (1113)
.+.+|-..+|-.|+..+.|+|..||+.|..|=..|....
T Consensus 988 ~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 988 SLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred ccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence 478899999999999999999999999999999887654
No 112
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=29 Score=43.53 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHh
Q 001255 501 CARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRL 580 (1113)
Q Consensus 501 keR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ll~kl 580 (1113)
--|..|+..|-.|+.+.- +..+-..+...+.|.|.-|.+++|=.=-.+......-.++|...+-+.+..+.
T Consensus 115 ~yr~~AiR~L~~I~d~~m---------~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~~s~~ 185 (865)
T KOG1078|consen 115 LYRAAAIRALCSIIDGTM---------LQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAVNSDN 185 (865)
T ss_pred chhHHHHHHHHhhcCcch---------hHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhccCcHH
Confidence 347888888888887642 22233455667889999888888755555555544456899998888766554
Q ss_pred cCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhcc--CCCHHHHHHHHHHHHHHHhhhccCCCCCCChhhHHHHHHhH
Q 001255 581 IDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDE--QRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKL 658 (1113)
Q Consensus 581 gD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~--~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 658 (1113)
. -+|-+|.-.|-.++..-... +..+...... -+||-.+.-........+.+- +.........+
T Consensus 186 ~----m~QyHalglLyqirk~drla--~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~---------~~~~s~~~~fl 250 (865)
T KOG1078|consen 186 I----MVQYHALGLLYQIRKNDRLA--VSKLVQKFTRGSLKSPLAVCMLIRIASELLKEN---------QQADSPLFPFL 250 (865)
T ss_pred H----HHHHHHHHHHHHHHhhhHHH--HHHHHHHHccccccchhHHHHHHHHHHHHhhhc---------ccchhhHHHHH
Confidence 3 57888888888887643322 3344433332 268877776766666666531 11122334445
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhc
Q 001255 659 TPLVHDKNTKLKEAAITCIISVYTHY 684 (1113)
Q Consensus 659 ~~~~~d~n~~VR~aA~~~L~~l~~~~ 684 (1113)
=.|+..|.-.|---|..++..|+..+
T Consensus 251 ~s~l~~K~emV~~EaArai~~l~~~~ 276 (865)
T KOG1078|consen 251 ESCLRHKSEMVIYEAARAIVSLPNTN 276 (865)
T ss_pred HHHHhchhHHHHHHHHHHHhhccccC
Confidence 55777788888777777888887554
No 113
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.18 E-value=3.3 Score=51.12 Aligned_cols=101 Identities=19% Similarity=0.228 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhc-----cCChhHHHHHHHHHHHHHHhhCHH
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV-----TEDEKTLVTCINCLTKLVGRLSQE 1035 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~-----s~~~~~~~~al~~L~~lie~~~~~ 1035 (1113)
+.+.+-++|-|+.++.|....+.+.+...+-++++.++..-+-..|.|-|. +.+-..++-|+-+++.+++++..-
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~ 463 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA 463 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666677777666666665444444444432 334556666666666666555444
Q ss_pred HHHhhhhhHHHHHHHHhcCCCHHHHHHHHH
Q 001255 1036 ELMAQLPSFLPALFEAFGNQSADVRKTVVF 1065 (1113)
Q Consensus 1036 ~l~~~L~~lip~l~~~l~D~~seVRkaAv~ 1065 (1113)
.+ -+.++.+.+|+.-+++++--.-+.
T Consensus 464 ~v----~d~~lpi~~~~~~~dp~iv~~~~~ 489 (700)
T KOG2137|consen 464 AV----LDELLPILKCIKTRDPAIVMGFLR 489 (700)
T ss_pred Hh----HHHHHHHHHHhcCCCcHHHHHHHH
Confidence 33 222345666666666665444433
No 114
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=93.05 E-value=0.53 Score=47.34 Aligned_cols=93 Identities=10% Similarity=0.092 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhchhhhhhHH--HHHHHH-HHHHh---
Q 001255 903 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLD-DADSSVREVALSLINEMLKNQKDVMEDSV--EIVIEK-LLHVT--- 975 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~-D~n~~vr~~aL~~L~~L~~~~~~~~~~~~--~~~l~~-ll~~~--- 975 (1113)
..-+|-+.|+.... .=++.+..|.++|. .+|+.+...||.+|..+.++-|..|...+ ..|+.. ++..+
T Consensus 21 ~ileicD~In~~~~-----~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~ 95 (141)
T cd03565 21 LNMEICDIINETED-----GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPK 95 (141)
T ss_pred HHHHHHHHHhCCCC-----cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHccc
Confidence 44455555554321 23566888889997 46888988999999999999999887432 234444 44443
Q ss_pred CCChHHHHHHHHHHHHHHHhhcChh
Q 001255 976 KDAVPKVSNEAEHCLTVVLSQYDPF 1000 (1113)
Q Consensus 976 ~Ds~~~Vr~aa~~~l~~l~~~~~p~ 1000 (1113)
.+....|++.+.+.+..|...+..+
T Consensus 96 ~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 96 NNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred CCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 3455689999999999999988653
No 115
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.04 E-value=3.4 Score=52.05 Aligned_cols=182 Identities=14% Similarity=0.153 Sum_probs=114.8
Q ss_pred hhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHH
Q 001255 889 MCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVI 968 (1113)
Q Consensus 889 l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l 968 (1113)
+...| ..+|.+|++++...+..|... ...|.+++ +.....|..++...=.+|...++.-+ +-....+
T Consensus 28 l~s~n---~~~kidAmK~iIa~M~~G~dm--ssLf~dVi----K~~~trd~ElKrL~ylYl~~yak~~P----~~~lLav 94 (757)
T COG5096 28 LESSN---DYKKIDAMKKIIAQMSLGEDM--SSLFPDVI----KNVATRDVELKRLLYLYLERYAKLKP----ELALLAV 94 (757)
T ss_pred ccccC---hHHHHHHHHHHHHHHhcCCCh--HHHHHHHH----HHHHhcCHHHHHHHHHHHHHHhccCH----HHHHHHH
Confidence 44445 368999999998887776541 23344433 33324466677665455555544222 4466788
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHH
Q 001255 969 EKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPAL 1048 (1113)
Q Consensus 969 ~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l 1048 (1113)
+.+++-++|+.+.+|-.|...+..+-..-=...+++.|...+++.....|..|.-++.++. +++++-+... . .+-.+
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly-~ld~~l~~~~-g-~~~~l 171 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY-RLDKDLYHEL-G-LIDIL 171 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH-hcCHhhhhcc-c-HHHHH
Confidence 9999999999999999988877653222111224444455555666677888888888888 5555555432 0 12245
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHH--hh--hhhHhhhhcCC
Q 001255 1049 FEAFGNQSADVRKTVVFCLVDIYIM--LG--KAFLPYLERLN 1086 (1113)
Q Consensus 1049 ~~~l~D~~seVRkaAv~clv~i~~~--lG--e~i~p~l~~L~ 1086 (1113)
...+.|.++.|-.+|+..+-.+|.- .| ..+...++.|.
T Consensus 172 ~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~ 213 (757)
T COG5096 172 KELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLD 213 (757)
T ss_pred HHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhcc
Confidence 5556899999999999988888754 22 23444455544
No 116
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.02 E-value=0.18 Score=36.52 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhhc
Q 001255 967 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY 997 (1113)
Q Consensus 967 ~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~ 997 (1113)
++|.+++.+.|+...||.+|..|+..+++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 5899999999999999999999999998764
No 117
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.85 E-value=1.3 Score=45.72 Aligned_cols=126 Identities=17% Similarity=0.239 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhH-------HHHhhhhhccC-ChhHHHHHHHHHHHHHHhhCH
Q 001255 963 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRC-------LSVIVPLLVTE-DEKTLVTCINCLTKLVGRLSQ 1034 (1113)
Q Consensus 963 ~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~-------l~~l~~~l~s~-~~~~~~~al~~L~~lie~~~~ 1034 (1113)
.+.-+...+...+.++...-|..+...++.+++.++++.+ +..+..+++.. ....+..|+..|+.++.....
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3444566677778888889999999999999999887754 44445555443 334566788888888866642
Q ss_pred ------HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcCChhhH
Q 001255 1035 ------EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQL 1090 (1113)
Q Consensus 1035 ------~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L~~s~~ 1090 (1113)
+.+.+.++.+++.+.+-+++ .++...+..++-.+..+..-.+.||-.++...-.
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALL 161 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHH
Confidence 44567899999999998887 7889999999999998888889998877754433
No 118
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=38 Score=43.56 Aligned_cols=157 Identities=14% Similarity=0.133 Sum_probs=102.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHH---hchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh---hHH
Q 001255 930 VLEVLDDADSSVREVALSLINEMLK---NQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF---RCL 1003 (1113)
Q Consensus 930 Ll~~L~D~n~~vr~~aL~~L~~L~~---~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~---~~l 1003 (1113)
....|.+.+..+|.++|.+|..-+. .....+-+-+-.+-|.+++++.++.+-+..-|-.|+..+...++-. +++
T Consensus 808 ~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l 887 (1014)
T KOG4524|consen 808 GIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFL 887 (1014)
T ss_pred HHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455667888899999999887443 3445577778888899999999999999999999999999887743 444
Q ss_pred HHhhhhhc-----------cCChhHHHHHHHHHHHHHHhhCHHH-----HHhhhhhHHHHHHHHhcCCCHHH-HHHHHHH
Q 001255 1004 SVIVPLLV-----------TEDEKTLVTCINCLTKLVGRLSQEE-----LMAQLPSFLPALFEAFGNQSADV-RKTVVFC 1066 (1113)
Q Consensus 1004 ~~l~~~l~-----------s~~~~~~~~al~~L~~lie~~~~~~-----l~~~L~~lip~l~~~l~D~~seV-RkaAv~c 1066 (1113)
.-+.|+++ ++.++.-....|+-.++++.++.-. -..+++.++.+..-.+.+-.+.+ -..|..|
T Consensus 888 ~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~l~l~~~~l~~v~e~~~I~l~~~~~q~Lqe~~~s~ 967 (1014)
T KOG4524|consen 888 EDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPYLELAGVSLHMVAEGVKIYLSLIQPQVLQEIARSC 967 (1014)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCcceeeecccccHHHHhhhhhhhHHhcChHHHHHHHHHH
Confidence 44444443 2333433455666667776665311 12356777777666666655553 5556666
Q ss_pred HHHHHHHhhh-hhHhhhhcCC
Q 001255 1067 LVDIYIMLGK-AFLPYLERLN 1086 (1113)
Q Consensus 1067 lv~i~~~lGe-~i~p~l~~L~ 1086 (1113)
+..+..+=+. .+.++...+.
T Consensus 968 F~~~V~~ekp~~i~~~~~~lh 988 (1014)
T KOG4524|consen 968 FLDLVPVEKPQRISSMSLRLH 988 (1014)
T ss_pred HHHHhccCCCcccchhhhhcC
Confidence 5534433332 3555555554
No 119
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.70 E-value=1.1 Score=51.75 Aligned_cols=123 Identities=18% Similarity=0.183 Sum_probs=105.4
Q ss_pred CHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCc-
Q 001255 485 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK- 563 (1113)
Q Consensus 485 ~~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~- 563 (1113)
.+.|.|. +++.-|=|.|++|+..|++++.+....++ .++-.+.+.+..++.|--+.|=......+..++..+.+
T Consensus 59 tlkeLl~--qlkHhNakvRkdal~glkd~l~s~p~~l~---~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e 133 (393)
T KOG2149|consen 59 TLKELLS--QLKHHNAKVRKDALNGLKDLLKSHPAELQ---SHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKE 133 (393)
T ss_pred cHHHHHh--hhcCchHhhhHHHHHHHHHHHHhChHHHH---HHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchh
Confidence 4688988 78999999999999999999999654332 57778888889999999999988888888887766543
Q ss_pred chHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHH
Q 001255 564 PFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALL 612 (1113)
Q Consensus 564 ~~~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~ 612 (1113)
.+.++...+++.+.--|.-.-+.+|.-+.+-|..+.+.|++.+...+..
T Consensus 134 ~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~ 182 (393)
T KOG2149|consen 134 DQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK 182 (393)
T ss_pred hhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH
Confidence 4589999999999999999999999999999999999999998777664
No 120
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.59 E-value=20 Score=39.94 Aligned_cols=139 Identities=19% Similarity=0.271 Sum_probs=99.0
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCC-chhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHH
Q 001255 495 SPSSDWCARVSAFNYLRSLLQQGPK-GIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERIL 573 (1113)
Q Consensus 495 ~~s~nWkeR~eal~~L~~~l~~~~~-~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll 573 (1113)
+.|.|+..|..|++.|..+++.-++ .++. .++.-|++-|..+|.|.+ .+..+|..|..|+ .|+..-......++
T Consensus 8 Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~--~ev~~L~~F~~~rl~D~~--~~~~~l~gl~~L~-~~~~~~~~~~~~i~ 82 (262)
T PF14500_consen 8 LTSEDPIIRAKALELLSEVLERLPPDFLSR--QEVQVLLDFFCSRLDDHA--CVQPALKGLLALV-KMKNFSPESAVKIL 82 (262)
T ss_pred hCCCCHHHHHHHHHHHHHHHHhCCHhhccH--HHHHHHHHHHHHHhccHh--hHHHHHHHHHHHH-hCcCCChhhHHHHH
Confidence 5689999999999999999998764 2222 567788888999996644 4566699998888 55544466688888
Q ss_pred HHHHHHhc--CCchhhHHHHHHHHHHHHhhCC------ccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhh
Q 001255 574 PHVFSRLI--DPKELVRQPCSTTLDIVSKTYS------VDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKH 638 (1113)
Q Consensus 574 ~~ll~klg--D~K~~vr~~a~~~L~~i~e~~~------~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~ 638 (1113)
..++++.- ......|-.+-+.|+.+.+.+. .+..+..+...+.+-|-|+--.-+++.+...+.+|
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 88888664 4456678889999998887753 23345555555655588877766666655444433
No 121
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=92.36 E-value=3.6 Score=46.42 Aligned_cols=143 Identities=15% Similarity=0.217 Sum_probs=99.5
Q ss_pred cCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh-h---hhhH--HHHHHHHHHHHhC--------CC
Q 001255 913 ANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD-V---MEDS--VEIVIEKLLHVTK--------DA 978 (1113)
Q Consensus 913 ~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~-~---~~~~--~~~~l~~ll~~~~--------Ds 978 (1113)
..+...+.+++..+++.++..+.|.+..++.++|.+|..|+...+. . +..+ .+.+-..+..++- |.
T Consensus 107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~ 186 (282)
T PF10521_consen 107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE 186 (282)
T ss_pred cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence 3344455678999999999999999999999999999999997753 3 3333 5555555555555 66
Q ss_pred hHHHHHHHHHHHHHHHhhc--C-----hhhHHHHhhhh-hc----cCC---hhHHHHHHHHHHHHHHhhCHHHHHhhhhh
Q 001255 979 VPKVSNEAEHCLTVVLSQY--D-----PFRCLSVIVPL-LV----TED---EKTLVTCINCLTKLVGRLSQEELMAQLPS 1043 (1113)
Q Consensus 979 ~~~Vr~aa~~~l~~l~~~~--~-----p~~~l~~l~~~-l~----s~~---~~~~~~al~~L~~lie~~~~~~l~~~L~~ 1043 (1113)
...+-..|-.|+..++... . ...+..++.++ +. ..+ .+....-++-+..++..+|...+ .+|..
T Consensus 187 s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~-~hL~r 265 (282)
T PF10521_consen 187 SLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSV-KHLQR 265 (282)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHH-HHHHH
Confidence 6788889999998887652 1 11233444442 22 123 33334445778888888886555 78999
Q ss_pred HHHHHHHHhcCCC
Q 001255 1044 FLPALFEAFGNQS 1056 (1113)
Q Consensus 1044 lip~l~~~l~D~~ 1056 (1113)
++|.+.+-+.|..
T Consensus 266 ii~~l~~~l~npf 278 (282)
T PF10521_consen 266 IIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999887764
No 122
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.34 E-value=6.8 Score=54.36 Aligned_cols=178 Identities=14% Similarity=0.217 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHhcCC--chhhHHhH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Q 001255 898 TSKHGALQQLIKASVAND--HSIWTKYF-NQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLH 973 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~--~~~~~~~f-~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~ 973 (1113)
..+.-|++.|..+....- .+...-+| +++|..+...+... +..||+..++++..|....+..+..--+.++.-+--
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~ 1231 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTT 1231 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 467777777766543221 11111233 36777777777644 567999999999999998776665544555555555
Q ss_pred HhCCChHHHHHHHHHHHHHHHhh-cC------hh---hHHHHhhhhhccCC-hhHHHHHHHHHHHHHHhhCH--------
Q 001255 974 VTKDAVPKVSNEAEHCLTVVLSQ-YD------PF---RCLSVIVPLLVTED-EKTLVTCINCLTKLVGRLSQ-------- 1034 (1113)
Q Consensus 974 ~~~Ds~~~Vr~aa~~~l~~l~~~-~~------p~---~~l~~l~~~l~s~~-~~~~~~al~~L~~lie~~~~-------- 1034 (1113)
+..|.++.+++.|-+++..|+.. ++ +. .|+..+..+...+. -.+-+.|+++|..+...+-.
T Consensus 1232 aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~ 1311 (1780)
T PLN03076 1232 AAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSR 1311 (1780)
T ss_pred HHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccccc
Confidence 56788899999999999887754 22 11 35555555554332 33455666666544322200
Q ss_pred ---------------------------HH-HHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 001255 1035 ---------------------------EE-LMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1035 ---------------------------~~-l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe 1076 (1113)
+. ..-.++ ++-++.+.+.|...|||+.|+..|-.+....|.
T Consensus 1312 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p-LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1312 NKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP-LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred ccccccccccccccccccccccccccchhHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 00 011122 334666778899999999999999999988884
No 123
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=92.09 E-value=2 Score=55.49 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh----hHHHHHHHH--HHHHhCCCh-----HHHHHHHHHHHH
Q 001255 923 FNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME----DSVEIVIEK--LLHVTKDAV-----PKVSNEAEHCLT 991 (1113)
Q Consensus 923 f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~----~~~~~~l~~--ll~~~~Ds~-----~~Vr~aa~~~l~ 991 (1113)
|..++..|..-+.+++.-+|..+-..|+++++.-+.... ++.-..+.. .|+.++|=. ..||++...++.
T Consensus 75 f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 75 FLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 666677777777788888999888889998887654321 222222222 235666533 489999999999
Q ss_pred HHHhhcChhh---HHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001255 992 VVLSQYDPFR---CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1068 (1113)
Q Consensus 992 ~l~~~~~p~~---~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv 1068 (1113)
++.++..+.. .+.++..++..-+|..+.+.+..+...+. .-.+.+...+.-+++.+.++++|.+-+||..|+..++
T Consensus 155 ~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~a-ir~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~ 233 (1549)
T KOG0392|consen 155 AYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVA-IRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLV 233 (1549)
T ss_pred HHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhh
Confidence 9999987764 56666666666789888777666655554 3345666678888999999999999999999999998
Q ss_pred HHHHHh
Q 001255 1069 DIYIML 1074 (1113)
Q Consensus 1069 ~i~~~l 1074 (1113)
.+-...
T Consensus 234 ~~~s~~ 239 (1549)
T KOG0392|consen 234 PAPSIQ 239 (1549)
T ss_pred hhhHHH
Confidence 776555
No 124
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.95 E-value=2.4 Score=43.88 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=81.5
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchh--
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKD-- 958 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~-- 958 (1113)
+..+.+.+.+++ ++.|-.|+.=+...+.+++.+.+..+....+..|+..|... ...+.+.++.+|..|+.....
T Consensus 27 ~~ri~~LL~s~~---~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 27 VTRINSLLQSKS---AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHhCCCC---hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555665554 47888999877777888777777788899999999999775 455889999999999987642
Q ss_pred h-----hhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh
Q 001255 959 V-----MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP 999 (1113)
Q Consensus 959 ~-----~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p 999 (1113)
. ..+.+..++..++....+ ..+...+..++..+...+|.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 1 234566666666666665 45666777777777766544
No 125
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.94 E-value=3.2 Score=41.81 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH--HHHHHHHHHHHhC-CCh
Q 001255 903 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTK-DAV 979 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~--~~~~l~~ll~~~~-Ds~ 979 (1113)
...+|-++|+.... .=++.+.+|.++|...|+++...||.+|..+.++-|..|... -.-|+..+...+. ...
T Consensus 24 ~ileicD~In~~~~-----~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~ 98 (142)
T cd03569 24 SILEICDMIRSKDV-----QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKN 98 (142)
T ss_pred HHHHHHHHHhCCCC-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCC
Confidence 55556666655421 245678889999999999999999999999999999888653 3346666665554 567
Q ss_pred HHHHHHHHHHHHHHHhhcChh
Q 001255 980 PKVSNEAEHCLTVVLSQYDPF 1000 (1113)
Q Consensus 980 ~~Vr~aa~~~l~~l~~~~~p~ 1000 (1113)
..|++.+...+..|...+..+
T Consensus 99 ~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 99 EEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 899999999999999888653
No 126
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=91.70 E-value=5.6 Score=45.86 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=57.4
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
.+..+++.+.+.+ +..|..|...+..+ .-...+..|...+.|.+..||..|...|..+-
T Consensus 44 ~~~~~~~~l~~~~---~~vr~~aa~~l~~~-----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~------- 102 (335)
T COG1413 44 AADELLKLLEDED---LLVRLSAAVALGEL-----------GSEEAVPLLRELLSDEDPRVRDAAADALGELG------- 102 (335)
T ss_pred hHHHHHHHHcCCC---HHHHHHHHHHHhhh-----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------
Confidence 3566777777763 56788887664321 12344666888888999999988877433321
Q ss_pred hhHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHH
Q 001255 961 EDSVEIVIEKLLHVTK-DAVPKVSNEAEHCLTVVL 994 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~-Ds~~~Vr~aa~~~l~~l~ 994 (1113)
.+. .++.+++.+. |....||..+..++..+-
T Consensus 103 ~~~---a~~~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 103 DPE---AVPPLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred Chh---HHHHHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 122 3444444444 788888888888877544
No 127
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=91.67 E-value=10 Score=44.65 Aligned_cols=189 Identities=14% Similarity=0.116 Sum_probs=116.3
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCc--hhhHHhHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhch
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDH--SIWTKYFNQILTAVLEVLDD--ADSSVREVALSLINEMLKNQK 957 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~--~~~~~~f~~ll~~Ll~~L~D--~n~~vr~~aL~~L~~L~~~~~ 957 (1113)
+...+..+.+.+- .|.-.... .-++...++ .+...++-..+...+..+.+ ...++....|.++..|+...+
T Consensus 92 i~~~i~~l~~~~~--~K~i~~~~---l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p 166 (372)
T PF12231_consen 92 IDHSIESLQNPNS--PKSICTHY---LWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFP 166 (372)
T ss_pred HHHHHHHHcCCCC--CHHHHHHH---HHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHH
Confidence 4566666766653 24222222 224444433 22333444444444444444 234456668999999999988
Q ss_pred hhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhH-HHHhhhhhccC--Chh-----------------H
Q 001255 958 DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRC-LSVIVPLLVTE--DEK-----------------T 1017 (1113)
Q Consensus 958 ~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~-l~~l~~~l~s~--~~~-----------------~ 1017 (1113)
..|...+..-+|.++..+-++.+.||..|..++..+...+++++. -..+.+.++.. +.. .
T Consensus 167 ~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~ 246 (372)
T PF12231_consen 167 QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDE 246 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCC
Confidence 888888888888888888889999999999999988888887642 22223333211 000 0
Q ss_pred HHHHHHHHHHHHHhhCHH--HHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1018 LVTCINCLTKLVGRLSQE--ELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1018 ~~~al~~L~~lie~~~~~--~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
-..+.++...++--++.. .-..++...+...-.|+++.++.||.+|..|.-.+...+.
T Consensus 247 ~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~ 306 (372)
T PF12231_consen 247 YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASN 306 (372)
T ss_pred cchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Confidence 011223333333223322 2234678888889999999999999999998877665443
No 128
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=1 Score=53.81 Aligned_cols=98 Identities=18% Similarity=0.310 Sum_probs=72.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH--HH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ER 571 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l--~~ 571 (1113)
.+...||-.=+| |-.+|..-. ..-.+++.+|.+++...+.+|+..+|.+|..++..||..|+..+ +.
T Consensus 13 ~l~~pDWa~Nle----IcD~IN~~~-------~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~ 81 (470)
T KOG1087|consen 13 SLAEPDWALNLE----ICDLINSTE-------GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKE 81 (470)
T ss_pred cccCccHHHHHH----HHHHHhcCc-------cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 456788865443 334444322 13347889999999999999999999999999999999886322 23
Q ss_pred HHHHHHHHh----cCCchhhHHHHHHHHHHHHhhCCc
Q 001255 572 ILPHVFSRL----IDPKELVRQPCSTTLDIVSKTYSV 604 (1113)
Q Consensus 572 ll~~ll~kl----gD~K~~vr~~a~~~L~~i~e~~~~ 604 (1113)
+|..++... .|.+ ||+++...|+.|.++|+.
T Consensus 82 fL~emVk~~k~~~~~~~--Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 82 FLNEMVKRPKNKPRDLK--VREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHhccccCCcchh--HHHHHHHHHHHHHHHccC
Confidence 555544443 4556 999999999999999988
No 129
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.63 E-value=1.5 Score=46.42 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhh--cChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhC
Q 001255 965 EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ--YDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLS 1033 (1113)
Q Consensus 965 ~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~--~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~ 1033 (1113)
-.+++.|++.+-++...||..|.+.+..++.. .+|..|+|+|.-...+.+...+-.|.+++..+.++++
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 34678888999999999999999999999966 7999999999988777777788889999999999987
No 130
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.36 E-value=1.7 Score=40.38 Aligned_cols=87 Identities=22% Similarity=0.163 Sum_probs=68.4
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 961 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~ 961 (1113)
..+.+..+.|.. ...|..||..|.++|.... .+..+...++..++..|.|.++=|=-.|.+.|..|+...+.
T Consensus 5 ~~~al~~L~dp~---~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~--- 76 (92)
T PF10363_consen 5 LQEALSDLNDPL---PPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD--- 76 (92)
T ss_pred HHHHHHHccCCC---cchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH---
Confidence 456677776654 4699999999999999888 22346788999999999999999988899999998875443
Q ss_pred hHHHHHHHHHHHHhCCChH
Q 001255 962 DSVEIVIEKLLHVTKDAVP 980 (1113)
Q Consensus 962 ~~~~~~l~~ll~~~~Ds~~ 980 (1113)
.+++.+++.+.|..+
T Consensus 77 ----~vl~~L~~~y~~~~~ 91 (92)
T PF10363_consen 77 ----EVLPILLDEYADPSE 91 (92)
T ss_pred ----HHHHHHHHHHhCccc
Confidence 468888888877643
No 131
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=91.28 E-value=3.3 Score=49.21 Aligned_cols=118 Identities=16% Similarity=0.146 Sum_probs=81.7
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHH
Q 001255 927 LTAVLEVL-DDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSV 1005 (1113)
Q Consensus 927 l~~Ll~~L-~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~ 1005 (1113)
+..|...| .|....++..+...|... +. ...+..+++.+.|....|+.++..+|. .++...+.+.
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~--------~~--~~~~~~L~~~L~d~~~~vr~aaa~ALg----~i~~~~a~~~ 121 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQ--------ED--ALDLRSVLAVLQAGPEGLCAGIQAALG----WLGGRQAEPW 121 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhcc--------CC--hHHHHHHHHHhcCCCHHHHHHHHHHHh----cCCchHHHHH
Confidence 45577777 455666665443333211 11 113788888999998889998888876 4677788899
Q ss_pred hhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 1006 IVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus 1006 l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i 1070 (1113)
|.+++.+.+...+..++..++. .+ ....+.+...++|.++.||.+|+.++-.+
T Consensus 122 L~~~L~~~~p~vR~aal~al~~----r~--------~~~~~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 122 LEPLLAASEPPGRAIGLAALGA----HR--------HDPGPALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred HHHHhcCCChHHHHHHHHHHHh----hc--------cChHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 9999988877777666655444 11 12235677788899999999999998655
No 132
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=91.12 E-value=2.4 Score=53.62 Aligned_cols=141 Identities=16% Similarity=0.268 Sum_probs=100.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh--hhHHHHhh
Q 001255 930 VLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP--FRCLSVIV 1007 (1113)
Q Consensus 930 Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p--~~~l~~l~ 1007 (1113)
|+..|...+..+.+.+-..|.+++..-...| ++..+++.+-... -..++..++.+=.| -.++..|.
T Consensus 9 l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~------l~~~l~~y~~~t~------s~~~~~il~~~~~P~~K~~~~~l~ 76 (668)
T PF04388_consen 9 LLSLLESNDLSVLEEIKALLQELLNSDREPW------LVNGLVDYYLSTN------SQRALEILVGVQEPHDKHLFDKLN 76 (668)
T ss_pred HHHHhcCCchhhHHHHHHHHHHHhhccchHH------HHHHHHHHHhhcC------cHHHHHHHHhcCCccHHHHHHHHH
Confidence 4455556677788888888888887654444 6777777775443 23455556666566 56888888
Q ss_pred hhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhh-hhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcC
Q 001255 1008 PLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL-PSFLPALFEAFG-NQSADVRKTVVFCLVDIYIMLGKAFLPYLERL 1085 (1113)
Q Consensus 1008 ~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L-~~lip~l~~~l~-D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L 1085 (1113)
.++... ..++.+|.+|+.+|...++.. ...+ ..+++.|.+|+. |.+.-|=-+|+.||+.+.=++...+.+||+.|
T Consensus 77 ~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l-~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~L 153 (668)
T PF04388_consen 77 DYFVKP--SYRLQALTLLGHFVRSQPPWL-YKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDL 153 (668)
T ss_pred HHHcCc--hhHHHHHHHHHHHHhcCCchH-HHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 888654 457788999999997776432 2211 245677777776 99999999999999988877777777777643
No 133
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=91.11 E-value=2.5 Score=42.05 Aligned_cols=91 Identities=12% Similarity=0.169 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH--HHHHHHHHHHHhCCC--
Q 001255 903 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTKDA-- 978 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~--~~~~l~~ll~~~~Ds-- 978 (1113)
..-+|-++|+... ..=++.+..|.++|...|+.+...||.+|..++++-|..|... -.-|+..+...+.++
T Consensus 20 ~~l~icD~i~~~~-----~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~ 94 (133)
T smart00288 20 LILEICDLINSTP-----DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP 94 (133)
T ss_pred HHHHHHHHHhCCC-----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC
Confidence 4445566665553 1245668889999999999999999999999999999888654 234666666655543
Q ss_pred hHHHHHHHHHHHHHHHhhcC
Q 001255 979 VPKVSNEAEHCLTVVLSQYD 998 (1113)
Q Consensus 979 ~~~Vr~aa~~~l~~l~~~~~ 998 (1113)
.+.|++.+...+..|...+.
T Consensus 95 ~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 95 LPLVKKRILELIQEWADAFK 114 (133)
T ss_pred cHHHHHHHHHHHHHHHHHHc
Confidence 23499999999999999874
No 134
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.00 E-value=19 Score=40.16 Aligned_cols=183 Identities=17% Similarity=0.216 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHh
Q 001255 898 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA--DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 975 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~--n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~ 975 (1113)
..-..++..+..+++-.... ......++..++....-. -...|..++.+|..|+.+....+......++..+++.+
T Consensus 55 ~~~~~~l~gl~~L~~~~~~~--~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~ 132 (262)
T PF14500_consen 55 ACVQPALKGLLALVKMKNFS--PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLI 132 (262)
T ss_pred hhHHHHHHHHHHHHhCcCCC--hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHh
Confidence 44555677777777554432 234666677766544322 34589999999999999876666656667777777766
Q ss_pred -CCChHHHHHHHHHHHHHHHhhcChhh----HHHHhhhhhc-----cCChhHHHHHHHHHHHHHHhhC-HHHHHhhhhhH
Q 001255 976 -KDAVPKVSNEAEHCLTVVLSQYDPFR----CLSVIVPLLV-----TEDEKTLVTCINCLTKLVGRLS-QEELMAQLPSF 1044 (1113)
Q Consensus 976 -~Ds~~~Vr~aa~~~l~~l~~~~~p~~----~l~~l~~~l~-----s~~~~~~~~al~~L~~lie~~~-~~~l~~~L~~l 1044 (1113)
|++.+.-..-+-..+..+...++... ++.++.-++- ..+.+..+..-++-..|-+-+. .+.. -+.+
T Consensus 133 ~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f---a~~~ 209 (262)
T PF14500_consen 133 DGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF---APFA 209 (262)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh---HHHH
Confidence 44545555556666777777766543 4444433321 1222211111222222222221 1222 3667
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhHhhhhcC
Q 001255 1045 LPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERL 1085 (1113)
Q Consensus 1045 ip~l~~~l~D~~seVRkaAv~clv~i~~~lGe-~i~p~l~~L 1085 (1113)
+|.+.+-+....+.|+.-+..+|.+....+|. .+.+|+..+
T Consensus 210 ~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~i 251 (262)
T PF14500_consen 210 FPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTI 251 (262)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 89999999999999999999999999999994 799998776
No 135
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=90.90 E-value=2.9 Score=46.15 Aligned_cols=201 Identities=12% Similarity=0.154 Sum_probs=101.4
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhc
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD------ADSSVREVALSLINEMLKNQ 956 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D------~n~~vr~~aL~~L~~L~~~~ 956 (1113)
+.++..|.|..+ ...|.+||..|+. + ..+.+|++-+...+.+ +|..+.+..+...-.|+++-
T Consensus 200 ~kvisal~dEs~--~~~r~aAl~sLr~---d-------sGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~ 267 (450)
T COG5095 200 DKVISALLDESD--EQTRDAALESLRN---D-------SGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNK 267 (450)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhcc---C-------ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC
Confidence 444555544332 2567788887652 2 2234444444444433 34555666666667777654
Q ss_pred hhhhhhHHHHHHHHHHHHh-----C-CChH----HHHHHHHHHHHHHHhhcChh------hHHHH-hhhhhc-cCChhHH
Q 001255 957 KDVMEDSVEIVIEKLLHVT-----K-DAVP----KVSNEAEHCLTVVLSQYDPF------RCLSV-IVPLLV-TEDEKTL 1018 (1113)
Q Consensus 957 ~~~~~~~~~~~l~~ll~~~-----~-Ds~~----~Vr~aa~~~l~~l~~~~~p~------~~l~~-l~~~l~-s~~~~~~ 1018 (1113)
.--+++|+..++|.||.|+ | ++++ .+|.-|...++.++..++-. ++... +..++. .+-+-+-
T Consensus 268 ~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~ 347 (450)
T COG5095 268 YIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQ 347 (450)
T ss_pred ceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchh
Confidence 4446889988888888654 3 2322 38888888999888887642 22222 233332 3444556
Q ss_pred HHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HhhhhhHhhhhcCChhhHhhHHH
Q 001255 1019 VTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI---MLGKAFLPYLERLNSTQLRLVTI 1095 (1113)
Q Consensus 1019 ~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~---~lGe~i~p~l~~L~~s~~kLl~~ 1095 (1113)
-+|++.+.-+-...=.-.+.+.+.--.-.+.+.++.-+-+---.+-.|+-.++. ++-++=.|-=..+++..-+||+-
T Consensus 348 YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~~~e~~~~e~n~~vd~l~dalliL~~d~Lpnqr~~~~n~~~llek 427 (450)
T COG5095 348 YGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEKGNEEEIYENNRVVDLLKDALLILQSDGLPNQRTLPPNASGLLEK 427 (450)
T ss_pred hhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhccchhhcccchHHHHHHHHHHHHHhccCCCCccCCCCcHHHHHHH
Confidence 678877765432221111112221111222223322222222222244444443 44444445444566666666654
No 136
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.83 E-value=7.6 Score=46.68 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hchh--hhhhHHHHHHHHHHHHhC
Q 001255 900 KHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLK-NQKD--VMEDSVEIVIEKLLHVTK 976 (1113)
Q Consensus 900 R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~-~~~~--~~~~~~~~~l~~ll~~~~ 976 (1113)
+...+.+|-++..+..+..| |..++..++..= +|..+--+.|.+|..++. .|.. .=+.++..++-.+|....
T Consensus 27 hrk~~a~l~~~~t~~~f~~~---flr~vn~IL~~K--k~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~e 101 (885)
T COG5218 27 HRKSLAELMEMLTAHEFSEE---FLRVVNTILACK--KNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTE 101 (885)
T ss_pred HHHHHHHHHHHHHHHhhHHH---HHHHHHHhhccc--cCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhccc
Confidence 44455566666665555543 444444443332 344455566777777776 3432 125678888888888888
Q ss_pred CChHHHHHHHHHHHHHHHhhcCh--hhHHHHhhhhhc----cCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHH
Q 001255 977 DAVPKVSNEAEHCLTVVLSQYDP--FRCLSVIVPLLV----TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFE 1050 (1113)
Q Consensus 977 Ds~~~Vr~aa~~~l~~l~~~~~p--~~~l~~l~~~l~----s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~ 1050 (1113)
.+.+.||.-..+.+..+..+..+ +.+...|..-|. ..+...+++|+++|+.+-+.-+.++-. ...++..+++
T Consensus 102 skdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~--~~n~l~~~vq 179 (885)
T COG5218 102 SKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR--IVNLLKDIVQ 179 (885)
T ss_pred CcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH--HHHHHHHHHh
Confidence 88899999999999999999888 456655555543 345667889999999988766554432 1123333333
Q ss_pred HhcCCCHHHHHHHHH
Q 001255 1051 AFGNQSADVRKTVVF 1065 (1113)
Q Consensus 1051 ~l~D~~seVRkaAv~ 1065 (1113)
+|+.+|||.+|.-
T Consensus 180 --nDPS~EVRr~all 192 (885)
T COG5218 180 --NDPSDEVRRLALL 192 (885)
T ss_pred --cCcHHHHHHHHHH
Confidence 7999999998854
No 137
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.64 E-value=15 Score=46.49 Aligned_cols=144 Identities=20% Similarity=0.253 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHHHhhcChh-------hHHHHh
Q 001255 938 DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAV----PKVSNEAEHCLTVVLSQYDPF-------RCLSVI 1006 (1113)
Q Consensus 938 n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~----~~Vr~aa~~~l~~l~~~~~p~-------~~l~~l 1006 (1113)
++.|...+..++.+|++.. ....++.+.+||.++..++-+. .....-|.+.+.++++..||+ .+||.+
T Consensus 586 DP~V~~~~qd~f~el~q~~-~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaV 664 (1005)
T KOG2274|consen 586 DPQVASLAQDLFEELLQIA-ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAV 664 (1005)
T ss_pred CchHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHh
Confidence 4588888999999999843 3467889999999998887444 667888999999999998875 356666
Q ss_pred hhhh-ccCChhHHHHHHHHHHHHHHhhCHHHHH-----h--hhhhHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHhhhh
Q 001255 1007 VPLL-VTEDEKTLVTCINCLTKLVGRLSQEELM-----A--QLPSFLPALFEAFGNQSADVRKT-VVFCLVDIYIMLGKA 1077 (1113)
Q Consensus 1007 ~~~l-~s~~~~~~~~al~~L~~lie~~~~~~l~-----~--~L~~lip~l~~~l~D~~seVRka-Av~clv~i~~~lGe~ 1077 (1113)
..++ .+.+..+...+-|+|..++..- .+++. + .+-.+|..+.+-++-+.+|--.+ +-..++++..+.|.+
T Consensus 665 ak~tlHsdD~~tlQ~~~EcLra~Is~~-~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~e 743 (1005)
T KOG2274|consen 665 AKITLHSDDHETLQNATECLRALISVT-LEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSE 743 (1005)
T ss_pred HhheeecCChHHHHhHHHHHHHHHhcC-HHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHH
Confidence 5554 4678888888888888888543 33332 1 14578888887666544443222 334567788888877
Q ss_pred hHhhhh
Q 001255 1078 FLPYLE 1083 (1113)
Q Consensus 1078 i~p~l~ 1083 (1113)
+-|.+.
T Consensus 744 l~~n~d 749 (1005)
T KOG2274|consen 744 LGPNLD 749 (1005)
T ss_pred hchhHH
Confidence 776553
No 138
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=90.33 E-value=6.3 Score=45.46 Aligned_cols=152 Identities=20% Similarity=0.326 Sum_probs=94.4
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhchhh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLD-DADSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~-D~n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
.++.+...+.+.+ +..|..|...|.++= ....+..|.+.+. |.|..||..+...|..+-...
T Consensus 75 av~~l~~~l~d~~---~~vr~~a~~aLg~~~-----------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--- 137 (335)
T COG1413 75 AVPLLRELLSDED---PRVRDAAADALGELG-----------DPEAVPPLVELLENDENEGVRAAAARALGKLGDER--- 137 (335)
T ss_pred HHHHHHHHhcCCC---HHHHHHHHHHHHccC-----------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh---
Confidence 3566777777665 467888888554321 1223444556565 789999998888777654421
Q ss_pred hhhHHHHHHHHHHHHhCCChH------------HHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHH
Q 001255 960 MEDSVEIVIEKLLHVTKDAVP------------KVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTK 1027 (1113)
Q Consensus 960 ~~~~~~~~l~~ll~~~~Ds~~------------~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~ 1027 (1113)
.+..+++.+.|... .+|.++..++- .++....++.+.+.+.....-++..+..-|++
T Consensus 138 -------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~----~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~ 206 (335)
T COG1413 138 -------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG----ELGDPEAIPLLIELLEDEDADVRRAAASALGQ 206 (335)
T ss_pred -------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH----HcCChhhhHHHHHHHhCchHHHHHHHHHHHHH
Confidence 15566666666542 24444444433 23445566677777776665666666666666
Q ss_pred HHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001255 1028 LVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVD 1069 (1113)
Q Consensus 1028 lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~ 1069 (1113)
+.... ..+.+.+.+.+.|.+..||+.++..+..
T Consensus 207 ~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 207 LGSEN---------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred hhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 55332 3455677888888888888888886653
No 139
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=90.17 E-value=2.6 Score=44.89 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhc
Q 001255 938 DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV 1011 (1113)
Q Consensus 938 n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~ 1011 (1113)
-...-..+|.++..|+..+|....+++..++..+-+...+..-..++.++.|+.+.+...+|+.++.++.=.+.
T Consensus 13 y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~ 86 (198)
T PF08161_consen 13 YQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLD 86 (198)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCcc
Confidence 34466678999999999999988888888888888888888789999999999999999999999988754443
No 140
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=90.06 E-value=2.5 Score=41.32 Aligned_cols=99 Identities=10% Similarity=0.147 Sum_probs=73.5
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHH
Q 001255 495 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILP 574 (1113)
Q Consensus 495 ~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~ 574 (1113)
..+.+|-.=..-+++|.++..... .+..++++.|.++|+|.+..|-..+|.+|..++....+.|..|+..-..
T Consensus 10 Tsdd~~p~pgy~~~Eia~~t~~s~-------~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~ 82 (122)
T cd03572 10 TSDDDEPTPGYLYEEIAKLTRKSV-------GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSA 82 (122)
T ss_pred hcCCCCCCchHHHHHHHHHHHcCH-------HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHH
Confidence 345566666666677776665522 3677899999999999998888999999999999988899999987765
Q ss_pred HHHHHh---c--------CCchhhHHHHHHHHHHHHh
Q 001255 575 HVFSRL---I--------DPKELVRQPCSTTLDIVSK 600 (1113)
Q Consensus 575 ~ll~kl---g--------D~K~~vr~~a~~~L~~i~e 600 (1113)
.+-... | |.-..||.+|.+++.++-.
T Consensus 83 ~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 83 QIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 443322 2 2344578888888887753
No 141
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.95 E-value=2.7 Score=55.48 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhcc----CChhHHHH
Q 001255 945 ALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT----EDEKTLVT 1020 (1113)
Q Consensus 945 aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s----~~~~~~~~ 1020 (1113)
+..+...|+. ...|.+.+..+|-.||-.++.+...+|..|..|+..|++.=|.-.+.+-+...+.+ ..-..+-+
T Consensus 797 a~li~~~la~--~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREA 874 (1692)
T KOG1020|consen 797 AKLIVFYLAH--ARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREA 874 (1692)
T ss_pred HHHHHHHHHh--hhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHH
Confidence 3334444443 23466667777788888899999999999999999999884433344444444432 23345668
Q ss_pred HHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-h-----hHhhhhcCC---hhhHh
Q 001255 1021 CINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-A-----FLPYLERLN---STQLR 1091 (1113)
Q Consensus 1021 al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe-~-----i~p~l~~L~---~s~~k 1091 (1113)
|+++++..|-.++ +. .......|+..+.|+.-.|||-+++.|-.+|.-..+ . ..+.|...+ +.-++
T Consensus 875 aldLvGrfvl~~~-e~----~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~k 949 (1692)
T KOG1020|consen 875 ALDLVGRFVLSIP-EL----IFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKK 949 (1692)
T ss_pred HHHHHhhhhhccH-HH----HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHH
Confidence 8999998874333 22 345556788999999999999999999999988764 2 234555553 22577
Q ss_pred hHHHHHHh
Q 001255 1092 LVTIYANR 1099 (1113)
Q Consensus 1092 Ll~~yi~R 1099 (1113)
|+.+-+.+
T Consensus 950 Lv~etf~k 957 (1692)
T KOG1020|consen 950 LVRETFLK 957 (1692)
T ss_pred HHHHHHHH
Confidence 76655543
No 142
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.83 E-value=11 Score=47.21 Aligned_cols=179 Identities=14% Similarity=0.208 Sum_probs=106.3
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHH-hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchh
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTK-YFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKD 958 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~-~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~ 958 (1113)
.+..||..|....| .....+||.+|-++|--++-+.... -.+.+...|...|.+. |..+...|++.|.+||..++.
T Consensus 168 k~kkLL~gL~~~~D--es~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESD--ESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHHHhccccCC--hHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 36788888877754 3578889989888775554333221 1577888899999875 788999999999999999986
Q ss_pred hhh----hH-HHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhhcChhhHHH---------HhhhhhccCChhHHHHHHH
Q 001255 959 VME----DS-VEIVIEKLLH-VTKDAVPKVSNEAEHCLTVVLSQYDPFRCLS---------VIVPLLVTEDEKTLVTCIN 1023 (1113)
Q Consensus 959 ~~~----~~-~~~~l~~ll~-~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~---------~l~~~l~s~~~~~~~~al~ 1023 (1113)
... .+ +..++.+|+. -|-| |.+.+.+|+..|-.. +|-.||. |+ .++. -..+ +.||.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiD----vAEQ~LqALE~iSR~-H~~AiL~AG~l~a~Lsyl-DFFS-i~aQ--R~Ala 316 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYID----VAEQSLQALEKISRR-HPKAILQAGALSAVLSYL-DFFS-IHAQ--RVALA 316 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhH----HHHHHHHHHHHHHhh-ccHHHHhcccHHHHHHHH-HHHH-HHHH--HHHHH
Confidence 532 22 3344444443 1223 555556666555544 4444332 22 1111 1111 23444
Q ss_pred HHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1024 CLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1024 ~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
....+-..+.+++.. .+.+.+|.|..-+.+.+.-+=..+.-|+.-+.
T Consensus 317 iaaN~Cksi~sd~f~-~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 317 IAANCCKSIRSDEFH-FVMEALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred HHHHHHhcCCCccch-HHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 445555556655542 34556677777777766555555444444333
No 143
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.80 E-value=17 Score=44.67 Aligned_cols=160 Identities=15% Similarity=0.290 Sum_probs=90.9
Q ss_pred HhhcCCCCChhHHHHHHHHHHHHHhcCCch------hhHHh-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 888 LMCNGNDGSPTSKHGALQQLIKASVANDHS------IWTKY-------FNQILTAVLEVLDDADSSVREVALSLINEMLK 954 (1113)
Q Consensus 888 ~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~------~~~~~-------f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~ 954 (1113)
.|.+..+. .++.++...|...++..... .+..+ =.+-+.++++.++|.+..||.+|..-|-.+|+
T Consensus 11 ~L~~a~d~--~~~~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck 88 (556)
T PF05918_consen 11 ILADAKDK--SQHEEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCK 88 (556)
T ss_dssp HHHHTGGG--GGGHHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--
T ss_pred HhhcCCCc--ccCHHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH
Confidence 34454432 46777888877766543111 11122 25566778888899999999999999999998
Q ss_pred hchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhc---cCChhHHHHHHHHHHHHHHh
Q 001255 955 NQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV---TEDEKTLVTCINCLTKLVGR 1031 (1113)
Q Consensus 955 ~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~---s~~~~~~~~al~~L~~lie~ 1031 (1113)
..+..+ .-+.--|...+.--....+.++..++..+... .|...|..+...+. +.+..++-.+|++|..=+..
T Consensus 89 ~~~~~v----~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~-d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~ 163 (556)
T PF05918_consen 89 DNPEHV----SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ-DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKP 163 (556)
T ss_dssp T--T-H----HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGG
T ss_pred hHHHHH----hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhh
Confidence 654333 33333344445544467788888899888877 66666666666664 45666777788887544434
Q ss_pred hCHHHHH--hhh-hhHHHHHHHHhcC
Q 001255 1032 LSQEELM--AQL-PSFLPALFEAFGN 1054 (1113)
Q Consensus 1032 ~~~~~l~--~~L-~~lip~l~~~l~D 1054 (1113)
++.+.+. ..+ .-|+..+.+.+.|
T Consensus 164 l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 164 LKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp S-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred CcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 4433332 111 2234456666766
No 144
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=89.79 E-value=2.9 Score=43.28 Aligned_cols=88 Identities=14% Similarity=0.314 Sum_probs=69.6
Q ss_pred CChhHHHHHHHHHHHHHhcCCCchh------HHHHhH-HHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHH
Q 001255 498 SDWCARVSAFNYLRSLLQQGPKGIQ------EVIQNF-EKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME 570 (1113)
Q Consensus 498 ~nWkeR~eal~~L~~~l~~~~~~~~------~v~~~l-~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~ 570 (1113)
.++..|.=||+-|..+++.+...+. ....-+ ..+|..|.+.+...++.|+..+|.++..++..++..++..+.
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele 113 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE 113 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999987644222 111122 367888888777777999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCch
Q 001255 571 RILPHVFSRLIDPKE 585 (1113)
Q Consensus 571 ~ll~~ll~klgD~K~ 585 (1113)
.+++.++.++-+.+.
T Consensus 114 ~~l~~i~~~il~~~~ 128 (168)
T PF12783_consen 114 VFLSHIILRILESDN 128 (168)
T ss_pred HHHHHHHHHHHccCC
Confidence 999999998866554
No 145
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=89.56 E-value=10 Score=45.48 Aligned_cols=135 Identities=15% Similarity=0.196 Sum_probs=88.2
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHHH
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA--------DSSVREVALSLINEML 953 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~--------n~~vr~~aL~~L~~L~ 953 (1113)
+.++.+.+-..+ ...|.+||+.|+. +..+..++.-+...+.+. |.......++++..|+
T Consensus 209 y~~It~a~~g~~---~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl 275 (576)
T KOG2549|consen 209 YKEITEACTGSD---EPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL 275 (576)
T ss_pred HHHHHHHHhcCC---HHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh
Confidence 366666665544 3689999999762 234566666666666442 2334445556666666
Q ss_pred HhchhhhhhHHHHHHHHHHHHhC----------CChHHHHHHHHHHHHHHHhhcChh------hHHHHhhhhhcc--CCh
Q 001255 954 KNQKDVMEDSVEIVIEKLLHVTK----------DAVPKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLVT--EDE 1015 (1113)
Q Consensus 954 ~~~~~~~~~~~~~~l~~ll~~~~----------Ds~~~Vr~aa~~~l~~l~~~~~p~------~~l~~l~~~l~s--~~~ 1015 (1113)
++-.-.+++|+..++|-||.|+- |.+-.+|.-|...+..|+..++-. +++..+.-.+.+ +.+
T Consensus 276 ~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 276 DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 65555689999999999998873 667778998988888888776532 455555444432 345
Q ss_pred hHHHHHHHHHHHHH
Q 001255 1016 KTLVTCINCLTKLV 1029 (1113)
Q Consensus 1016 ~~~~~al~~L~~li 1029 (1113)
-+.-+|+..|..+-
T Consensus 356 st~YGai~gL~~lg 369 (576)
T KOG2549|consen 356 STHYGAIAGLSELG 369 (576)
T ss_pred hhhhhHHHHHHHhh
Confidence 56667776665443
No 146
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=89.39 E-value=9.6 Score=48.19 Aligned_cols=171 Identities=15% Similarity=0.211 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch---hhhhhHHHHHHHHHHHH
Q 001255 898 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK---DVMEDSVEIVIEKLLHV 974 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~---~~~~~~~~~~l~~ll~~ 974 (1113)
..|..|+..+.... +..+..+..-.+|+.|.....+....+.-.-+++|..+++--+ ...+.-+..++..++-.
T Consensus 506 ~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k 582 (1005)
T KOG2274|consen 506 PVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLK 582 (1005)
T ss_pred chhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHH
Confidence 46777777665544 3334445566778888888888777777777788888777332 22333344444444444
Q ss_pred hC-CChHHHHHHHHHHHHHHHhh---cChh--hHHHHhhhhhccCChh--H--HHHHHHHHHHHHHhhCHHHHHhhhhhH
Q 001255 975 TK-DAVPKVSNEAEHCLTVVLSQ---YDPF--RCLSVIVPLLVTEDEK--T--LVTCINCLTKLVGRLSQEELMAQLPSF 1044 (1113)
Q Consensus 975 ~~-Ds~~~Vr~aa~~~l~~l~~~---~~p~--~~l~~l~~~l~s~~~~--~--~~~al~~L~~lie~~~~~~l~~~L~~l 1044 (1113)
+. |+ .|...+..|++.++.. ++|. +|+|.+..++...+|. . --.++++|+.+++.-+++--...+.-+
T Consensus 583 ~s~DP--~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~ 660 (1005)
T KOG2274|consen 583 YSEDP--QVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYA 660 (1005)
T ss_pred hcCCc--hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 44 55 8888899998877643 5663 6999999988754432 2 235789999999777765444456677
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Q 001255 1045 LPALFEAFGN-QSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1045 ip~l~~~l~D-~~seVRkaAv~clv~i~~~ 1073 (1113)
.|++++|.-| .|.++=.+|..||-++..+
T Consensus 661 FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 661 FPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred hHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 8999998765 6788999999999988776
No 147
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=89.36 E-value=11 Score=44.19 Aligned_cols=139 Identities=17% Similarity=0.208 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhchhhhhhH----HHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHhh--cC---hhhHHHH
Q 001255 936 DADSSVREVALSLINEMLKNQKDVMEDS----VEIVIEKLLHVTKDAVP-KVSNEAEHCLTVVLSQ--YD---PFRCLSV 1005 (1113)
Q Consensus 936 D~n~~vr~~aL~~L~~L~~~~~~~~~~~----~~~~l~~ll~~~~Ds~~-~Vr~aa~~~l~~l~~~--~~---p~~~l~~ 1005 (1113)
+.++.||..|++++++++..... +..+ +..++-.-|+ .|.+. .=|+.|...++.++.. .+ |..++..
T Consensus 36 ~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~--~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra 112 (371)
T PF14664_consen 36 SDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLD--RDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA 112 (371)
T ss_pred CCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhc--ccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 44588999999999999885432 2222 3333333222 34433 3478888888888877 22 4457777
Q ss_pred hhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhHhhhh
Q 001255 1006 IVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLE 1083 (1113)
Q Consensus 1006 l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe-~i~p~l~ 1083 (1113)
|..+.+..+.+-+..|++.|..+.=.- ++.+.. .. -+..+.+++.|...+ .+..++..+...+.. ...+|+.
T Consensus 113 lvaiae~~~D~lr~~cletL~El~l~~-P~lv~~-~g-G~~~L~~~l~d~~~~---~~~~l~~~lL~lLd~p~tR~yl~ 185 (371)
T PF14664_consen 113 LVAIAEHEDDRLRRICLETLCELALLN-PELVAE-CG-GIRVLLRALIDGSFS---ISESLLDTLLYLLDSPRTRKYLR 185 (371)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHhhC-HHHHHH-cC-CHHHHHHHHHhccHh---HHHHHHHHHHHHhCCcchhhhhc
Confidence 777777777788889999998887333 333321 11 124566666664444 555566666666664 5555553
No 148
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.33 E-value=10 Score=47.28 Aligned_cols=165 Identities=14% Similarity=0.187 Sum_probs=101.3
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHH
Q 001255 886 LHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVE 965 (1113)
Q Consensus 886 L~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~ 965 (1113)
|+.|-|.|.+ ....+||+.|..+|..+.. ...++..+.+-...+|..|+...--+|-.-++.++. -+.
T Consensus 40 L~~lLdSnkd--~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd----LAL 107 (968)
T KOG1060|consen 40 LKQLLDSNKD--SLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD----LAL 107 (968)
T ss_pred HHHHHhcccc--HHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC----cee
Confidence 4555555533 5789999999999877653 223344455555577888888766555555554432 123
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhc----cCChhHHHHHHHHHHHHHHhhCHHHHHhhh
Q 001255 966 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV----TEDEKTLVTCINCLTKLVGRLSQEELMAQL 1041 (1113)
Q Consensus 966 ~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~----s~~~~~~~~al~~L~~lie~~~~~~l~~~L 1041 (1113)
+-|..+=..++|++.-+|..|..++..|- ..-+.|+++-.++ .-..-.|..|-.-+.+|- .++++.=
T Consensus 108 LSIntfQk~L~DpN~LiRasALRvlSsIR----vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLY-sLd~e~k---- 178 (968)
T KOG1060|consen 108 LSINTFQKALKDPNQLIRASALRVLSSIR----VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLY-SLDPEQK---- 178 (968)
T ss_pred eeHHHHHhhhcCCcHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHh-cCChhhH----
Confidence 34555566789999999998888776542 2223333333332 222223444444444544 3343332
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1042 PSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1042 ~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
..++..|-+-+.|+.+-|=-+|+.++-.+|
T Consensus 179 ~qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 179 DQLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 244556677779999999999999988887
No 149
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.28 E-value=3.8 Score=54.64 Aligned_cols=142 Identities=18% Similarity=0.212 Sum_probs=91.2
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 961 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~ 961 (1113)
++.|..+|...++ .+|..|..-++.++........ +.|..+....+.++.|....||..++......+-+.+...+
T Consensus 261 ip~l~~eL~se~~---~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 261 IPQLEFELLSEQE---EVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHhcchH---HHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 5788888876663 6999999988888877664333 66888999999999999999999999888887766443322
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHH----HHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHh
Q 001255 962 DSVEIVIEKLLHVTKDAVPKVSNE----AEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGR 1031 (1113)
Q Consensus 962 ~~~~~~l~~ll~~~~Ds~~~Vr~a----a~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~ 1031 (1113)
.-. ++..+-+..-|...-||.. +....+.+....+. +++.+.+-+..+.|..|..|++-|+.+.++
T Consensus 337 ~~~--~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~--ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AST--ILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL--LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHH--HHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 222 2222222222332222222 11222333333333 777777777777777777777777777664
No 150
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.94 E-value=3.7 Score=46.54 Aligned_cols=145 Identities=17% Similarity=0.275 Sum_probs=99.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh--hhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh---
Q 001255 927 LTAVLEVLDDADSSVREVALSLINEMLKNQKD--VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR--- 1001 (1113)
Q Consensus 927 l~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~--~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~--- 1001 (1113)
++.|...++..|..++..++..|..|+-.-.+ .+.+.-..++|.|++.+.|+.+.|.=.|-.+++.++....+..
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence 45577778888999999999999988764432 2444444689999999999999999999999999987765542
Q ss_pred ---HHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHH-HHHHHHHHHHHHHH
Q 001255 1002 ---CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSAD-VRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1002 ---~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~se-VRkaAv~clv~i~~ 1072 (1113)
-+|.+...+++.-.|-.++.+-|+..+.-+-..+.+- .=.-++..+++-+.-.++| +.-+|+..|+.+..
T Consensus 290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI-~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLI-ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccce-ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 4677777777766666555555554443221112110 0122345567777766666 88888888777654
No 151
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=88.74 E-value=2.7 Score=43.47 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=70.7
Q ss_pred CChHHHHHHHHHHHHHHHhhcC----hhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHh
Q 001255 977 DAVPKVSNEAEHCLTVVLSQYD----PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF 1052 (1113)
Q Consensus 977 Ds~~~Vr~aa~~~l~~l~~~~~----p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l 1052 (1113)
|..-++|.+|-+|+-++...+. ...++..+..++.. .+-+++.|.-+|.+++... +..+...|..+++.+..-+
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~-p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA-PEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS--HHHHHHCCTTTHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHh
Confidence 7778999999999999988754 34577777778866 7788889999999998555 4666566777777777666
Q ss_pred c------------CCCHHHHHHHHHHHHHHHHHhh
Q 001255 1053 G------------NQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1053 ~------------D~~seVRkaAv~clv~i~~~lG 1075 (1113)
. ++..|.-+++..|+.++..++.
T Consensus 116 ~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~ 150 (169)
T PF08623_consen 116 SKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIP 150 (169)
T ss_dssp H----TTS-HHHHHHHHHHHHHHHHHHHHH-HSST
T ss_pred hccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3 2335667777888877766654
No 152
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.33 E-value=5.8 Score=48.95 Aligned_cols=143 Identities=20% Similarity=0.183 Sum_probs=92.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhh
Q 001255 930 VLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV-TKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVP 1008 (1113)
Q Consensus 930 Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~-~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~ 1008 (1113)
+.+.+.|+++.+|-.++-.+..=.-..|. . -.+-.||+. ..|..+.||++|-.++..++-. .|+.|..++..
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgn--n----kair~lLh~aVsD~nDDVrRaAVialGFVl~~-dp~~~~s~V~l 596 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGN--N----KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-DPEQLPSTVSL 596 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCc--h----hhHHHhhcccccccchHHHHHHHHHheeeEec-ChhhchHHHHH
Confidence 44566788888887655443322111121 1 134555553 6799999999999999987755 88889988887
Q ss_pred hhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcCC
Q 001255 1009 LLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLN 1086 (1113)
Q Consensus 1009 ~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L~ 1086 (1113)
.-++-|...|-++-=.|+.....-|-.+ .+..|-.-+.|+..=||+.|.-++.-|+...-|...|-.....
T Consensus 597 Lses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~fr 667 (929)
T KOG2062|consen 597 LSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFR 667 (929)
T ss_pred HhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHH
Confidence 7777777776655444554433333222 2223333346999999999999998888777666666555443
No 153
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=88.20 E-value=3.3 Score=48.50 Aligned_cols=135 Identities=15% Similarity=0.271 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHhcCCc----hhhHHhHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc-----------h
Q 001255 898 TSKHGALQQLIKASVANDH----SIWTKYFNQ-----ILTAVLEVLDDADSSVREVALSLINEMLKNQ-----------K 957 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~----~~~~~~f~~-----ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~-----------~ 957 (1113)
|.|..||.-+...++.-.. -+|...|-+ -...++-.|+|+|...|..||.++..|+... .
T Consensus 11 kvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~ 90 (728)
T KOG4535|consen 11 KVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSD 90 (728)
T ss_pred HHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCC
Confidence 5777777776666544321 123221111 1223455678999999999999999987632 1
Q ss_pred hhhhhHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHhhcChhh--------HHHHhhhhhccCChhHHHHH
Q 001255 958 DVMEDSVEIVIEKLLHVT--------KDAVPKVSNEAEHCLTVVLSQYDPFR--------CLSVIVPLLVTEDEKTLVTC 1021 (1113)
Q Consensus 958 ~~~~~~~~~~l~~ll~~~--------~Ds~~~Vr~aa~~~l~~l~~~~~p~~--------~l~~l~~~l~s~~~~~~~~a 1021 (1113)
+.|.+|.-.+-..+++++ .+....+......|+..++.+.|.++ +..-+.++|++++.+.++.+
T Consensus 91 ~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~ 170 (728)
T KOG4535|consen 91 HAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSS 170 (728)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHH
Confidence 347777665555554443 47778999999999999999988764 55666888889999999999
Q ss_pred HHHHHHHHHhh
Q 001255 1022 INCLTKLVGRL 1032 (1113)
Q Consensus 1022 l~~L~~lie~~ 1032 (1113)
+-+|+.++..+
T Consensus 171 l~~~~~~v~t~ 181 (728)
T KOG4535|consen 171 LTLLGAIVSTH 181 (728)
T ss_pred HHHHHHHHhcC
Confidence 99888887544
No 154
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=88.08 E-value=8.9 Score=39.16 Aligned_cols=109 Identities=14% Similarity=0.236 Sum_probs=64.2
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCC--chhhHHhHHHHHHHHHHHh--------cCCCH---HH------H
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAND--HSIWTKYFNQILTAVLEVL--------DDADS---SV------R 942 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~--~~~~~~~f~~ll~~Ll~~L--------~D~n~---~v------r 942 (1113)
+.+++..|.... .++|.+||++|..++.... ...-++.|..|+..|++.+ .+++. .. .
T Consensus 6 i~~~~~~L~S~k---~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL 82 (155)
T PF11640_consen 6 INSILRLLSSDK---IKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRL 82 (155)
T ss_pred HHHHHHHHhccc---cchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHH
Confidence 566777777654 4799999999999997652 2122234444444444433 22221 22 2
Q ss_pred HHHHHHHHHHHHhchhhhhh-HHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHH
Q 001255 943 EVALSLINEMLKNQKDVMED-SVEIVIEKLLHVTKDAV-PKVSNEAEHCLTVV 993 (1113)
Q Consensus 943 ~~aL~~L~~L~~~~~~~~~~-~~~~~l~~ll~~~~Ds~-~~Vr~aa~~~l~~l 993 (1113)
..+..+|+.++..-..++.. .+..++..|++.+.++. .-+.--+..+++.+
T Consensus 83 ~~~a~~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L 135 (155)
T PF11640_consen 83 SSCASALRLFVEKSNSRLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKIL 135 (155)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 34556666666655555543 46778888999888776 33333344444444
No 155
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.97 E-value=21 Score=44.14 Aligned_cols=87 Identities=14% Similarity=0.228 Sum_probs=64.0
Q ss_pred hHHHHhhhhhccCChhHHHHHHHHHHHHHHhh-CHHHHHhhhhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhh---
Q 001255 1001 RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRL-SQEELMAQLPSFLPALFEAFG-NQSADVRKTVVFCLVDIYIMLG--- 1075 (1113)
Q Consensus 1001 ~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~-~~~~l~~~L~~lip~l~~~l~-D~~seVRkaAv~clv~i~~~lG--- 1075 (1113)
+|...|..+|.+++.-.|-.++|-+.+|+..- ..+.+..+.. .++..+. ++|.+||+.|+..|-++|-+-.
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d----~Ii~sLkterDvSirrravDLLY~mcD~~Nak~ 404 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQD----TIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ 404 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHH----HHHHHhccccchHHHHHHHHHHHHHhchhhHHH
Confidence 57777788888887777888899998887442 2355555653 4555666 9999999999999988885543
Q ss_pred --hhhHhhhhcCChhhHh
Q 001255 1076 --KAFLPYLERLNSTQLR 1091 (1113)
Q Consensus 1076 --e~i~p~l~~L~~s~~k 1091 (1113)
+++..||...+.+-+.
T Consensus 405 IV~elLqYL~tAd~sire 422 (938)
T KOG1077|consen 405 IVAELLQYLETADYSIRE 422 (938)
T ss_pred HHHHHHHHHhhcchHHHH
Confidence 4677898887766544
No 156
>PF05536 Neurochondrin: Neurochondrin
Probab=87.56 E-value=15 Score=45.52 Aligned_cols=189 Identities=19% Similarity=0.244 Sum_probs=121.7
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhH--HhHHHHHHHHHHHhcC-------CCH-HHHHHHHHHHH
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWT--KYFNQILTAVLEVLDD-------ADS-SVREVALSLIN 950 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~--~~f~~ll~~Ll~~L~D-------~n~-~vr~~aL~~L~ 950 (1113)
.+.+.++.|...+| ++|-.||--+.+++..+...... ..|+.+=..++.+|=- .+. .-+..|+.+|.
T Consensus 6 ~l~~c~~lL~~~~D---~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 6 SLEKCLSLLKSADD---TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHhccCCc---HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 46788888887773 79999999999999876533221 1344444445555511 133 36778999999
Q ss_pred HHHHhchhhhhhHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHhhcCh--h-----hHHHHhhhhhccCChhHHHHHH
Q 001255 951 EMLKNQKDVMEDSVEIVIEKLLHVTKDAVP-KVSNEAEHCLTVVLSQYDP--F-----RCLSVIVPLLVTEDEKTLVTCI 1022 (1113)
Q Consensus 951 ~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~-~Vr~aa~~~l~~l~~~~~p--~-----~~l~~l~~~l~s~~~~~~~~al 1022 (1113)
.++.--.-.-++-....+|.+++.+..... .+...+-+|+..++.. +. . ..++.|++++.+... ..-.++
T Consensus 83 ~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~~~~-~~E~Al 160 (543)
T PF05536_consen 83 AFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPNQSF-QMEIAL 160 (543)
T ss_pred HHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHhCcc-hHHHHH
Confidence 999822222345577789999998876656 8999999999999833 32 2 256777777765322 234567
Q ss_pred HHHHHHHHhhCHHHHH---hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 001255 1023 NCLTKLVGRLSQEELM---AQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1074 (1113)
Q Consensus 1023 ~~L~~lie~~~~~~l~---~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~l 1074 (1113)
++|..++...+.+... ..+..+++.+.+.+......-+=.....|..+....
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 7777777666643322 345567777887777666555555555555554443
No 157
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=87.45 E-value=7 Score=39.93 Aligned_cols=96 Identities=18% Similarity=0.342 Sum_probs=61.0
Q ss_pred CHHHHHhcCCCCCCChhHHHHHHHHHHHHHhcCC--CchhHHHHhHHHHHHHHHHhh--------cCcch---HH-----
Q 001255 485 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGP--KGIQEVIQNFEKVMKLFFQHL--------DDPHH---KV----- 546 (1113)
Q Consensus 485 ~~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~--~~~~~v~~~l~~l~~~l~~~l--------~Dsn~---kV----- 546 (1113)
++.+++. ++.|..=|||.+|++.|..++.+.+ ..+.. .+...+++.|.+.+ ..++. +.
T Consensus 5 ~i~~~~~--~L~S~k~keR~~al~~L~~il~~~~~~~~l~~--k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~ 80 (155)
T PF11640_consen 5 DINSILR--LLSSDKIKERNKALEDLRHILSSPPRVDSLND--KQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAES 80 (155)
T ss_pred hHHHHHH--HHhccccchHHHHHHHHHHHHcCccccccCCc--chHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHH
Confidence 5678888 7899999999999999999998753 22211 35566777665542 23222 22
Q ss_pred -HHHHHHHHHHHHHhhCcch-HHHHHHHHHHHHHHhcCCc
Q 001255 547 -AQAALSTLADIIPSCRKPF-ESYMERILPHVFSRLIDPK 584 (1113)
Q Consensus 547 -~~~~L~~l~~l~~~~~~~~-~~~l~~ll~~ll~klgD~K 584 (1113)
++.+-.+|-.++...-..+ ...+..|+..+.+-|-+.-
T Consensus 81 RL~~~a~~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~ 120 (155)
T PF11640_consen 81 RLSSCASALRLFVEKSNSRLKRKTVKALLDHITDLLPDPD 120 (155)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhCCc
Confidence 3344455555555544455 4666777777777775443
No 158
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.41 E-value=15 Score=45.44 Aligned_cols=167 Identities=18% Similarity=0.241 Sum_probs=98.2
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchH
Q 001255 487 SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFE 566 (1113)
Q Consensus 487 ~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~ 566 (1113)
+|+++ +++++--=.|+-|+.-|-++.-+-+. .+...+.-|...|.|+...|++.+..++++|+..-++.+-
T Consensus 147 ~Dv~t--LL~sskpYvRKkAIl~lykvFLkYPe-------Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 147 DDVFT--LLNSSKPYVRKKAILLLYKVFLKYPE-------ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHH--HHhcCchHHHHHHHHHHHHHHHhhhH-------hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 57888 78888888899999999888776553 3444455677789999999999999999999998664432
Q ss_pred ---H------------HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHH
Q 001255 567 ---S------------YMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFA 631 (1113)
Q Consensus 567 ---~------------~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l 631 (1113)
+ |+-.=+-.||..|.-.-+-++.+..+-|+-++++...-.+ +.+++
T Consensus 218 ~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSL-------------------lYECv 278 (877)
T KOG1059|consen 218 QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSL-------------------LYECV 278 (877)
T ss_pred cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHH-------------------HHHHH
Confidence 2 2222223344444322222444444444444433322221 12222
Q ss_pred HHHHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHh
Q 001255 632 ISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYT 682 (1113)
Q Consensus 632 ~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~ 682 (1113)
...++- .|.....-......+|+.++-.++.|..+.+|.-+.-++.-|..
T Consensus 279 NTVVa~-s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 279 NTVVAV-SMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred HHheee-hhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 211111 11111111223466777777777777777777777766665543
No 159
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=87.12 E-value=5.9 Score=46.06 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=72.9
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-------DSSVREVALSLINEMLKN 955 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~-------n~~vr~~aL~~L~~L~~~ 955 (1113)
.++...+...+ ...|.+||+.|+ .+ ..+..|++-+..++.+. |..+....+.++.+|+.+
T Consensus 181 ~~It~a~~~~~---~~~r~~aL~sL~---tD-------~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N 247 (343)
T cd08050 181 EEITEALVGSN---EEKRREALQSLR---TD-------PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN 247 (343)
T ss_pred HHHHHHHhCCC---HHHHHHHHHHhc---cC-------CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC
Confidence 45555554444 357888998865 22 23444444444444331 455566678888888887
Q ss_pred chhhhhhHHHHHHHHHHHHh----------CCChHHHHHHHHHHHHHHHhhcChh
Q 001255 956 QKDVMEDSVEIVIEKLLHVT----------KDAVPKVSNEAEHCLTVVLSQYDPF 1000 (1113)
Q Consensus 956 ~~~~~~~~~~~~l~~ll~~~----------~Ds~~~Vr~aa~~~l~~l~~~~~p~ 1000 (1113)
..-.+++|+..++|.+|.|+ .|.+-.+|+-|-.++..++..|+..
T Consensus 248 ~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~ 302 (343)
T cd08050 248 PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS 302 (343)
T ss_pred CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence 77778999999999999887 2455688999999999999887654
No 160
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.91 E-value=2.9 Score=40.50 Aligned_cols=70 Identities=16% Similarity=0.295 Sum_probs=43.8
Q ss_pred hHHHHhhhhhc-cCChhHHHHHHHHHHHHHHhhCH--HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1001 RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGRLSQ--EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1001 ~~l~~l~~~l~-s~~~~~~~~al~~L~~lie~~~~--~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
.+++.|..+|. +.+..+...|+.=|+.++..+|. ..+. .+. +-..|.+.|+|.|++||+.|..|+-.++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~-~lg-~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIE-KLG-AKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHH-HHS-HHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHH-hcC-hHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46666666663 33444455555557777777653 2332 221 23457888999999999999999987764
No 161
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=86.55 E-value=0.82 Score=35.80 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHH
Q 001255 1042 PSFLPALFEAFGNQSADVRKTVVFCL 1067 (1113)
Q Consensus 1042 ~~lip~l~~~l~D~~seVRkaAv~cl 1067 (1113)
+.+...+.+.+.|.++.||++|+..+
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57888999999999999999999753
No 162
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=86.27 E-value=9.7 Score=43.00 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=87.9
Q ss_pred hhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh------------HHHHhhhhhc--------cCChhH
Q 001255 958 DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR------------CLSVIVPLLV--------TEDEKT 1017 (1113)
Q Consensus 958 ~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~------------~l~~l~~~l~--------s~~~~~ 1017 (1113)
..++.+...++|.+|..+.|....++..+..|+..++..++... +.+.+.+.+- ......
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 45778899999999999999999999999999999999877654 1222233322 123344
Q ss_pred HHHHHHHHHHHHHhh---CHHHHHhhhhh-HHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHhhhhhHhhhhcCC
Q 001255 1018 LVTCINCLTKLVGRL---SQEELMAQLPS-FLPALFEAFGNQ----SADVRKTVVFCLVDIYIMLGKAFLPYLERLN 1086 (1113)
Q Consensus 1018 ~~~al~~L~~lie~~---~~~~l~~~L~~-lip~l~~~l~D~----~seVRkaAv~clv~i~~~lGe~i~p~l~~L~ 1086 (1113)
...++.+|..|+... +...-...+.. +-.++...+.+. ...+|..-...+..+...+|-...+||..+-
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii 267 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRII 267 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 445666666665431 11111112222 234466666653 3789999999999999999999999988764
No 163
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=86.16 E-value=5.4 Score=38.09 Aligned_cols=71 Identities=14% Similarity=0.264 Sum_probs=58.1
Q ss_pred CChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhHhhhhcCC
Q 001255 1013 EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLN 1086 (1113)
Q Consensus 1013 ~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe-~i~p~l~~L~ 1086 (1113)
+....+..++.-++.+++ .+...+...+|.++-.|..+++.. ++|..|..|.-.+...+++ ++.|+++..-
T Consensus 27 ~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIF 98 (107)
T ss_pred CCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 345567788999999998 666777777888888888887776 8999999999999999995 8999887653
No 164
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=85.95 E-value=22 Score=44.16 Aligned_cols=122 Identities=19% Similarity=0.308 Sum_probs=88.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHH-HHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhhcChhhHHH
Q 001255 927 LTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSV-EIVIEKLLH-VTKDAVPKVSNEAEHCLTVVLSQYDPFRCLS 1004 (1113)
Q Consensus 927 l~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~-~~~l~~ll~-~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~ 1004 (1113)
|+.|...++|.+..+.+.+|.++..+++... .+++ ..+||.|-+ ++......|+..+..|+..+++.+.-..|++
T Consensus 391 lplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d 467 (700)
T KOG2137|consen 391 LPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAVLD 467 (700)
T ss_pred HHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3456667788888899999999999987544 3554 467777766 4467888999999999999999999999999
Q ss_pred Hhhhhhcc---CChhHHHHHHHHHHHHHHhhCH--HHHH-hhhhhHHHHHHHH
Q 001255 1005 VIVPLLVT---EDEKTLVTCINCLTKLVGRLSQ--EELM-AQLPSFLPALFEA 1051 (1113)
Q Consensus 1005 ~l~~~l~s---~~~~~~~~al~~L~~lie~~~~--~~l~-~~L~~lip~l~~~ 1051 (1113)
.+.|+++. .+..+.++++.+-..++-...- +.+. ..+|.++|...+.
T Consensus 468 ~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 468 ELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 99999984 3455666777666655533322 3433 3578888776643
No 165
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.94 E-value=30 Score=42.62 Aligned_cols=133 Identities=20% Similarity=0.226 Sum_probs=93.5
Q ss_pred HH-HHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcch
Q 001255 487 SD-ALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF 565 (1113)
Q Consensus 487 ~e-~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~ 565 (1113)
++ .+. ++.+-|...|..|+++|.++=+..+ +. +-+.....++++|.+-.|=..++..+..+...|.-..
T Consensus 200 ~~~l~~--~~~~~D~~Vrt~A~eglL~L~eg~k--L~------~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~ 269 (823)
T KOG2259|consen 200 ARGLIY--LEHDQDFRVRTHAVEGLLALSEGFK--LS------KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL 269 (823)
T ss_pred HHHHHH--HhcCCCcchHHHHHHHHHhhccccc--cc------HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc
Confidence 44 555 7789999999999999998777322 11 1234455778999999999999999999998883211
Q ss_pred ------HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhc--------cCCCHHHHHHHHHH
Q 001255 566 ------ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLD--------EQRSPKAKLAVIEF 630 (1113)
Q Consensus 566 ------~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~--------~~knpkvk~~~L~~ 630 (1113)
.++....+..+..-+-|.-=+||-.|.++|-.+. .++-+.+..-|-+-++ .++-||....-.+|
T Consensus 270 e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~-~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~Gew 347 (823)
T KOG2259|consen 270 ERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFE-QVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEW 347 (823)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHH-HhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCc
Confidence 4677777788888888888889999999887654 3444444444444333 23556666655555
No 166
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.64 E-value=9.6 Score=46.68 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCCch-hhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChH
Q 001255 902 GALQQLIKASVANDHS-IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVP 980 (1113)
Q Consensus 902 ~AL~~L~~~l~~~~~~-~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~ 980 (1113)
+-|.+..++|.++.-. .-.+.|..||.... .+..+...|-.+|...++ .|-...+..|..+++.+.|...
T Consensus 3 e~lY~~~~~L~~a~d~~~~~~~y~~il~~~k-----g~~k~K~Laaq~I~kffk----~FP~l~~~Ai~a~~DLcEDed~ 73 (556)
T PF05918_consen 3 EKLYENYEILADAKDKSQHEEDYKEILDGVK-----GSPKEKRLAAQFIPKFFK----HFPDLQEEAINAQLDLCEDEDV 73 (556)
T ss_dssp HHHHHHHHHHHHTGGGGGGHHHHHHHHHGGG-----S-HHHHHHHHHHHHHHHC----C-GGGHHHHHHHHHHHHT-SSH
T ss_pred HHHHHHHhHhhcCCCcccCHHHHHHHHHHcc-----CCHHHHHHHHHHHHHHHh----hChhhHHHHHHHHHHHHhcccH
Confidence 4566667777665422 11234555444433 346677778788877775 5667788889999999999999
Q ss_pred HHHHHHHHHHHHHHhhc--ChhhHHHHhhhhhccCChhH
Q 001255 981 KVSNEAEHCLTVVLSQY--DPFRCLSVIVPLLVTEDEKT 1017 (1113)
Q Consensus 981 ~Vr~aa~~~l~~l~~~~--~p~~~l~~l~~~l~s~~~~~ 1017 (1113)
.||..|...|-.+|..- ...++..+|.++|++.+...
T Consensus 74 ~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E 112 (556)
T PF05918_consen 74 QIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVE 112 (556)
T ss_dssp HHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHH
T ss_pred HHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHH
Confidence 99999999999998774 34678999999998776543
No 167
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.63 E-value=34 Score=43.36 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=84.1
Q ss_pred hHHHHHHhhcCCCC-ChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 882 IPQILHLMCNGNDG-SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 882 i~~lL~~l~~~~~~-~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
++++..+-.+.+.+ ..+.|...-+.+.++++.-+... ..+|+.|+..++....|++...|.-+|..++.+|+...-..
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~-~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELV-FKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHH-HHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 45555533333222 24677777788888887766543 46788888888998889888899999999999999887666
Q ss_pred hhHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhhcC
Q 001255 961 EDSVEIVIEKLLH-VTKDAVPKVSNEAEHCLTVVLSQYD 998 (1113)
Q Consensus 961 ~~~~~~~l~~ll~-~~~Ds~~~Vr~aa~~~l~~l~~~~~ 998 (1113)
..++.-++-.|+. ...|....||++|...+..+....+
T Consensus 883 sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 883 SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 6666556666665 3457788999999888887776655
No 168
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=85.23 E-value=9.3 Score=42.41 Aligned_cols=135 Identities=17% Similarity=0.235 Sum_probs=86.0
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHHhchhhhhh-HH--HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh----
Q 001255 930 VLEVLDD-ADSSVREVALSLINEMLKNQKDVMED-SV--EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR---- 1001 (1113)
Q Consensus 930 Ll~~L~D-~n~~vr~~aL~~L~~L~~~~~~~~~~-~~--~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~---- 1001 (1113)
|+..|.. .++.+++.++.++...+.. .+.+ ++ ...++.|...+.++.+.|+..|..|++.+.....-..
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf---~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAF---PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccC---hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 4444544 3677999999888886542 2222 11 1367777788899999999999999987765543322
Q ss_pred HHHHhhhhhccC--ChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 1002 CLSVIVPLLVTE--DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus 1002 ~l~~l~~~l~s~--~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i 1070 (1113)
+++-++..+.+. +...-+.++++|+.|.-. +.-...+...+|.+...+..-+..+|-.+..+|+.+
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~---~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT---NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC---cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 333333333333 445556788888887411 111223445567777777777888999999988765
No 169
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.12 E-value=27 Score=45.68 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=87.0
Q ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHH-HHHHhhcChh-----------hHHHHhhhhhccCC
Q 001255 947 SLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCL-TVVLSQYDPF-----------RCLSVIVPLLVTED 1014 (1113)
Q Consensus 947 ~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l-~~l~~~~~p~-----------~~l~~l~~~l~s~~ 1014 (1113)
..|.++....+.-+-+++..+++ .+....-.+|.+..+++ +.++..+.-+ .++.++.+-+.+-.
T Consensus 297 ~fL~elS~~~P~l~~~~l~~lv~----lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvs 372 (1251)
T KOG0414|consen 297 NFLVELSERVPKLMLRQLTLLVD----LLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVS 372 (1251)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 34444444444434444443333 34434456777765554 4555554421 24555555554444
Q ss_pred hhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcCChhh-HhhH
Q 001255 1015 EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQ-LRLV 1093 (1113)
Q Consensus 1015 ~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L~~s~-~kLl 1093 (1113)
.-+|..++..+.++.++..... .....++..++..+.|+++-|||+|+..+..+-.+ .||...+.... +.-+
T Consensus 373 a~vRskVLqv~~~l~~~~s~p~--~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~-----~Pfs~~~~~~~~~~~~ 445 (1251)
T KOG0414|consen 373 AYVRSKVLQVFRRLFQQHSIPL--GSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDR-----HPFSSELRSDDLRAKL 445 (1251)
T ss_pred HHHHHHHHHHHHHHHHccCCCc--cHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhc-----CCchhhhcchhhhhhH
Confidence 5556666888888887665322 34567778899999999999999999988877633 36666664444 3336
Q ss_pred HHHHHhhh
Q 001255 1094 TIYANRIS 1101 (1113)
Q Consensus 1094 ~~yi~R~~ 1101 (1113)
+.|.++..
T Consensus 446 E~~~~~~e 453 (1251)
T KOG0414|consen 446 EKELQKLE 453 (1251)
T ss_pred HHHHHhhh
Confidence 66666654
No 170
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=85.05 E-value=21 Score=37.67 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=60.8
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchH
Q 001255 487 SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFE 566 (1113)
Q Consensus 487 ~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~ 566 (1113)
.++|. .|-+.+=+.|..|++-|+-++++|=- +=...+..|+.+..|+|..+...|.+++.++...|..-+.
T Consensus 11 ~~Il~--~~~~~~~~vr~~Al~~l~~il~qGLv-------nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 11 KNILE--LCLSSDDSVRLAALQVLELILRQGLV-------NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHH--HHhCCCHHHHHHHHHHHHHHHhcCCC-------ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 57787 78999999999999999999999731 2245678889999999999999999999999999875553
No 171
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=84.78 E-value=15 Score=35.06 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=56.5
Q ss_pred HHhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Q 001255 920 TKYFNQILTAVLEVLDD----ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS 995 (1113)
Q Consensus 920 ~~~f~~ll~~Ll~~L~D----~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~ 995 (1113)
.++|=.++..+-..+.| .....+..++.-|++|.+-.+..+..+...++-.|-.++.. ++++..+-+|-+.++.
T Consensus 6 ~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~ 83 (107)
T PF08064_consen 6 QPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHH
Confidence 35566666666666766 34558889999999999843333434333333333333333 3888888888888888
Q ss_pred hcChhhHHHHhhh
Q 001255 996 QYDPFRCLSVIVP 1008 (1113)
Q Consensus 996 ~~~p~~~l~~l~~ 1008 (1113)
.++++.+-+++-+
T Consensus 84 ~L~~~~l~~ll~~ 96 (107)
T PF08064_consen 84 TLDEEDLGPLLDQ 96 (107)
T ss_pred HCCHHHHHHHHHH
Confidence 8888766555543
No 172
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.14 E-value=21 Score=40.93 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=79.8
Q ss_pred ChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhc
Q 001255 881 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD----ADSSVREVALSLINEMLKNQ 956 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D----~n~~vr~~aL~~L~~L~~~~ 956 (1113)
....+++.+. .+| +.....|+.-|..++..++...-. ...+++..++.++.+ .+..+...|+.+|+.|++.-
T Consensus 106 ~~~~fl~ll~-~~D--~~i~~~a~~iLt~Ll~~~~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~ 181 (312)
T PF03224_consen 106 PYSPFLKLLD-RND--SFIQLKAAFILTSLLSQGPKRSEK-LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK 181 (312)
T ss_dssp -HHHHHHH-S--SS--HHHHHHHHHHHHHHHTSTTT--HH-HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH
T ss_pred hHHHHHHHhc-CCC--HHHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc
Confidence 3566777444 443 578888998999888777643222 113555556666544 34557788999999999866
Q ss_pred hhhhhhHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHhhcChh--------hHHHHhhhhhc-cCChhHHHHHH
Q 001255 957 KDVMEDSVEIVIEKLLHVT-----KDAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLV-TEDEKTLVTCI 1022 (1113)
Q Consensus 957 ~~~~~~~~~~~l~~ll~~~-----~Ds~~~Vr~aa~~~l~~l~~~~~p~--------~~l~~l~~~l~-s~~~~~~~~al 1022 (1113)
..+..-+-...++.+++.+ .++...+.-.=+.++-.|.-.+.++ .+++.+..+++ +.+.+..+.|+
T Consensus 182 ~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~l 261 (312)
T PF03224_consen 182 EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSL 261 (312)
T ss_dssp HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHH
Confidence 5441111133333444433 3444455555555566676555553 25666666664 34556666666
Q ss_pred HHHHHHHHhhC
Q 001255 1023 NCLTKLVGRLS 1033 (1113)
Q Consensus 1023 ~~L~~lie~~~ 1033 (1113)
-.+..+++.-.
T Consensus 262 a~l~Nl~~~~~ 272 (312)
T PF03224_consen 262 AILRNLLSKAP 272 (312)
T ss_dssp HHHHHTTSSSS
T ss_pred HHHHHHHhccH
Confidence 66666665544
No 173
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=83.96 E-value=36 Score=47.68 Aligned_cols=172 Identities=13% Similarity=0.107 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCCchhh---HHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchh--------------------
Q 001255 903 ALQQLIKASVANDHSIW---TKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKD-------------------- 958 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~---~~~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~-------------------- 958 (1113)
|.+.+..++.+.-.... ..+|.+++..|.+..... +.++-..|+.+|..+...+..
T Consensus 1244 AFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~ 1323 (1780)
T PLN03076 1244 AFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQ 1323 (1780)
T ss_pred HHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccccccccccccccccc
Confidence 44445544444321111 357888888887776533 344555667776654332200
Q ss_pred -------------hh---hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh----h---hHHH-Hhhhhhcc--
Q 001255 959 -------------VM---EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP----F---RCLS-VIVPLLVT-- 1012 (1113)
Q Consensus 959 -------------~~---~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p----~---~~l~-~l~~~l~s-- 1012 (1113)
.- ..+--.+|-.+.+.+.|...+||..|.+.+-.++..++. + .|+. +|.|++..
T Consensus 1324 ~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1324 SGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 00 122334555555667899999999999999766666543 1 2333 55555421
Q ss_pred -------------------------CCh--hHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHH
Q 001255 1013 -------------------------EDE--KTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVF 1065 (1113)
Q Consensus 1013 -------------------------~~~--~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~ 1065 (1113)
+.| .+-..|++.+..|+.++= +.+...|+.++..+..|+...+--+-+.++.
T Consensus 1404 ~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fF-d~L~~~L~~~l~ll~~ci~q~n~~la~ig~~ 1482 (1780)
T PLN03076 1404 HAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFY-PTVNPLLKKVLMLLVSFIKRPHQSLAGIGIA 1482 (1780)
T ss_pred HhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 113 122234444444443332 6677789999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 001255 1066 CLVDIYIMLG 1075 (1113)
Q Consensus 1066 clv~i~~~lG 1075 (1113)
||..+....|
T Consensus 1483 ~l~~li~~ng 1492 (1780)
T PLN03076 1483 AFVRLMSNAG 1492 (1780)
T ss_pred HHHHHHHHhh
Confidence 9999988887
No 174
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=83.64 E-value=64 Score=38.37 Aligned_cols=177 Identities=14% Similarity=0.117 Sum_probs=110.6
Q ss_pred hhHHHHHHHHHHHHHhcCC-------------chhh----HHhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhchh
Q 001255 897 PTSKHGALQQLIKASVAND-------------HSIW----TKYFNQILTAVLEVLD-DADSSVREVALSLINEMLKNQKD 958 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~-------------~~~~----~~~f~~ll~~Ll~~L~-D~n~~vr~~aL~~L~~L~~~~~~ 958 (1113)
.+.|.-||+-+..++...+ +..+ .-...++-+.|+..|. ...+.+.++.+++|..|..+.+.
T Consensus 61 ~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~ 140 (728)
T KOG4535|consen 61 PKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPY 140 (728)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCch
Confidence 4678888877766654321 1111 1123344455555553 45677888999999999987652
Q ss_pred -hhh-hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh--h----------------------hHHHHh------
Q 001255 959 -VME-DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP--F----------------------RCLSVI------ 1006 (1113)
Q Consensus 959 -~~~-~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p--~----------------------~~l~~l------ 1006 (1113)
+++ .|+--+...+=..++.+...|+-.+...+..++.--.| + ...+-|
T Consensus 141 ~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~ 220 (728)
T KOG4535|consen 141 DRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSL 220 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchh
Confidence 233 23334445554556677778998888888887743211 1 000000
Q ss_pred ------------------------hhhhccC----------------ChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHH
Q 001255 1007 ------------------------VPLLVTE----------------DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 1046 (1113)
Q Consensus 1007 ------------------------~~~l~s~----------------~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip 1046 (1113)
.+.+... -.+.+++|+..|+.+..+++ -+..++..+.-
T Consensus 221 ~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~--~~~~~~~~l~R 298 (728)
T KOG4535|consen 221 EETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS--MTQAYLMELGR 298 (728)
T ss_pred hhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 0000000 11468899999999887776 34456777888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1047 ALFEAFGNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1047 ~l~~~l~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
+|..||.|.+++|..-+-.|+-.+-.-++
T Consensus 299 vI~~~~~~~~p~~~l~~a~ll~~lg~~lv 327 (728)
T KOG4535|consen 299 VICKCMGEADPSIQLHGAKLLEELGTGLI 327 (728)
T ss_pred HHHccCCCCChHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998877765555
No 175
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=82.94 E-value=21 Score=42.82 Aligned_cols=80 Identities=19% Similarity=0.209 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcCh--------hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCC
Q 001255 984 NEAEHCLTVVLSQYDP--------FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ 1055 (1113)
Q Consensus 984 ~aa~~~l~~l~~~~~p--------~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~ 1055 (1113)
-+....+.++++..+. ..++.+..-.|.++.. ...++++|..+++.++.+.+.+.++.++-.+..-+...
T Consensus 177 PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~s 254 (435)
T PF03378_consen 177 PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSS 254 (435)
T ss_dssp HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 4444455555544332 2355555555556643 45689999999999999999999999999999988854
Q ss_pred CH--HHHHHHHH
Q 001255 1056 SA--DVRKTVVF 1065 (1113)
Q Consensus 1056 ~s--eVRkaAv~ 1065 (1113)
.. -||.-.++
T Consensus 255 kT~kf~~~fv~F 266 (435)
T PF03378_consen 255 KTEKFVKRFVVF 266 (435)
T ss_dssp --HHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 33 34444444
No 176
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.68 E-value=5.1 Score=47.99 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH--HHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHhhcCh
Q 001255 924 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTKDA--VPKVSNEAEHCLTVVLSQYDP 999 (1113)
Q Consensus 924 ~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~--~~~~l~~ll~~~~Ds--~~~Vr~aa~~~l~~l~~~~~p 999 (1113)
.+..++|++++..+++.+...||.+|..++++.|+.|... -+-||..++...+.. ...||+.+...|++|-..++-
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 3778889999999999999999999999999999999743 446888888777654 678999999999999987653
No 177
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=82.36 E-value=20 Score=34.20 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=58.0
Q ss_pred HHhHHHHHHHHHHHhcCCC--H--HHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Q 001255 920 TKYFNQILTAVLEVLDDAD--S--SVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS 995 (1113)
Q Consensus 920 ~~~f~~ll~~Ll~~L~D~n--~--~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~ 995 (1113)
.++|=.++..+-..+.|.. + .-+.+++.-++.|.+.+|..+..+...+.-.|..++. .++.+..+-.|...++.
T Consensus 6 ~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 6 KDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHH
Confidence 4566666777777777754 2 3688999999999996664444444333333334443 35799999999999988
Q ss_pred hcChhhHHHHhh
Q 001255 996 QYDPFRCLSVIV 1007 (1113)
Q Consensus 996 ~~~p~~~l~~l~ 1007 (1113)
..+.+.+-+++-
T Consensus 84 ~L~~~~l~~ll~ 95 (107)
T smart00802 84 TLKEEELGPLLD 95 (107)
T ss_pred hCCHHHHHHHHH
Confidence 888876555443
No 178
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=81.75 E-value=43 Score=38.52 Aligned_cols=165 Identities=16% Similarity=0.220 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhcCC-ch-hhHHhHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHhchhhhhhHHHHHHHHHHHH-
Q 001255 899 SKHGALQQLIKASVAND-HS-IWTKYFNQILTAVLEVLDDADSSVRE-VALSLINEMLKNQKDVMEDSVEIVIEKLLHV- 974 (1113)
Q Consensus 899 ~R~~AL~~L~~~l~~~~-~~-~~~~~f~~ll~~Ll~~L~D~n~~vr~-~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~- 974 (1113)
.+++.|+-+..++.... .. +.......++..++.-..+..+..|+ .+|.++..|++.++..+.+++..++..++++
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 35566655555565443 21 22223344444444444445555553 5689999999998877666655555555544
Q ss_pred ---hC---CChHHHHHHHHHHHHHHHhhcC-------hhh---HHHHhhhhhccCChhHHHHHHHHHHHHHHhhCH---H
Q 001255 975 ---TK---DAVPKVSNEAEHCLTVVLSQYD-------PFR---CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ---E 1035 (1113)
Q Consensus 975 ---~~---Ds~~~Vr~aa~~~l~~l~~~~~-------p~~---~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~---~ 1035 (1113)
+. ..-++.|..--..+++++..|. ++. ++..+.-++++....+-..|++.|..+++.+.. +
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~ 202 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE 202 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 43 2458999998888888888763 332 344444444555556666788888888877765 2
Q ss_pred H----HHhhhhhHHHHHHHHhcCCC--HHHHHHH
Q 001255 1036 E----LMAQLPSFLPALFEAFGNQS--ADVRKTV 1063 (1113)
Q Consensus 1036 ~----l~~~L~~lip~l~~~l~D~~--seVRkaA 1063 (1113)
. .....-.++..+...+.|++ +.-+..+
T Consensus 203 ~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~ 236 (319)
T PF08767_consen 203 FANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQS 236 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 2 22333444455555555543 3444444
No 179
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.49 E-value=38 Score=45.65 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=54.5
Q ss_pred HHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001255 1002 CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1002 ~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~ 1073 (1113)
++|.|...|.+.+...|..|+++++.++...+ ..+...-+.+...-...+.|...+||-+++.|.-.++.-
T Consensus 260 vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-SQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-hhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 56666666778888889999999999985544 344344556667788889999999999999988777644
No 180
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=81.20 E-value=9.1 Score=45.92 Aligned_cols=152 Identities=12% Similarity=0.151 Sum_probs=88.4
Q ss_pred HHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhh---cCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHhcC
Q 001255 506 AFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHL---DDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLID 582 (1113)
Q Consensus 506 al~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l---~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ll~klgD 582 (1113)
+.-.+..+|+.+.. .++.+|+..+..++ +|.-++++--+++.|..+.+. ....++..|...|+++-|
T Consensus 357 styAITtLLKTGt~------e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~---k~~s~l~FL~~~L~~eGg- 426 (898)
T COG5240 357 STYAITTLLKTGTE------ETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS---KKLSYLDFLGSSLLQEGG- 426 (898)
T ss_pred hHHHHHHHHHcCch------hhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH---HHHHHHHHHHHHHHhccc-
Confidence 44455566666653 36677777666654 444444655566666555443 446677777777777433
Q ss_pred CchhhHHHHHHHHHHHHhhCC--ccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCCChhhHHHHHHhHcc
Q 001255 583 PKELVRQPCSTTLDIVSKTYS--VDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTP 660 (1113)
Q Consensus 583 ~K~~vr~~a~~~L~~i~e~~~--~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 660 (1113)
.+ .+..+..++.-+++..| -+..+..|+.|+.|-.-++.-+.+|.-|..-.. .. ......|.+|+.
T Consensus 427 ~e--FK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP---------~a-~~P~~yvrhIyN 494 (898)
T COG5240 427 LE--FKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGP---------RA-KTPGKYVRHIYN 494 (898)
T ss_pred ch--HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCC---------CC-CCcchHHHHHHH
Confidence 33 44455556655665553 356778888888777777777777776643211 11 112334555555
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q 001255 661 LVHDKNTKLKEAAITCIIS 679 (1113)
Q Consensus 661 ~~~d~n~~VR~aA~~~L~~ 679 (1113)
-+-=-|.-||.+|..+|.-
T Consensus 495 R~iLEN~ivRsaAv~aLsk 513 (898)
T COG5240 495 RLILENNIVRSAAVQALSK 513 (898)
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 4333477788888877744
No 181
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=81.08 E-value=39 Score=41.79 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHhcCCc-----hhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHH
Q 001255 898 TSKHGALQQLIKASVANDH-----SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLL 972 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~-----~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll 972 (1113)
--|..-++-+.+++.+-.. +-..+....|+..|.++|.|.++-+|..||.++..|+.-. ..+..--.-++..++
T Consensus 314 tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~-sk~~~~r~ev~~lv~ 392 (1128)
T COG5098 314 TLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN-SKTVGRRHEVIRLVG 392 (1128)
T ss_pred hHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc-ccccchHHHHHHHHH
Confidence 5788888877777654321 2234467888999999999999999999999999999743 222222223455566
Q ss_pred HHhCCChHHHHHHHHHHHHHHHhhcChh
Q 001255 973 HVTKDAVPKVSNEAEHCLTVVLSQYDPF 1000 (1113)
Q Consensus 973 ~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~ 1000 (1113)
.++.|...+||+-|...+.-+... +|.
T Consensus 393 r~lqDrss~VRrnaikl~SkLL~~-HPF 419 (1128)
T COG5098 393 RRLQDRSSVVRRNAIKLCSKLLMR-HPF 419 (1128)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhc-CCh
Confidence 778999999999888877666544 443
No 182
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=80.88 E-value=13 Score=38.41 Aligned_cols=106 Identities=16% Similarity=0.209 Sum_probs=75.8
Q ss_pred hhHHHhcCC---C---ChhHHHHHHHH-hHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhh
Q 001255 4 VEGLVLGGA---A---DHPCFRGLLKQ-LVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVI 76 (1113)
Q Consensus 4 ~r~l~~gga---~---~~~~f~~~Lk~-l~~~l~~~l~dlRS~vv~~Ac~~l~~La~~L~~~f~~~a~~~lp~Ll~~~~~ 76 (1113)
|..++.+++ . +++.|...+|. +...|.+.+.+....+...++.++..|...++..+....|.+++.++..+-+
T Consensus 46 l~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~ 125 (168)
T PF12783_consen 46 LESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILE 125 (168)
T ss_pred HHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555554 4 34488888877 7888888888666999999999999999999999999999999998884433
Q ss_pred hhHHHHHhHHHHHHHHhhhCCCcccHHHHHHHh
Q 001255 77 TVLVIAESSDNCIKTMLRNCKAVRVLPRIADCA 109 (1113)
Q Consensus 77 t~kvi~~sa~~ai~~ii~~~~~~r~l~~i~~~~ 109 (1113)
+...-...=..++..+..-|.-|.++-++..+.
T Consensus 126 ~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NY 158 (168)
T PF12783_consen 126 SDNSSLWQKELALEILRELCKDPQFLVDLFVNY 158 (168)
T ss_pred cCCCcHHHHHHHHHHHHHHHhChhHHHHHHHHc
Confidence 222111122235555555677787777777554
No 183
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=80.76 E-value=18 Score=44.86 Aligned_cols=141 Identities=15% Similarity=0.206 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh----hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHH-
Q 001255 963 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF----RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL- 1037 (1113)
Q Consensus 963 ~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~----~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l- 1037 (1113)
|-..++|.|+..++-....||--...-+...+.++.++ +++|.+..++.+.+.-.+...++.|..++..++...+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 55566777777777666788888777777777777754 4666666677666665565667777777777765533
Q ss_pred ---HhhhhhHHH--------------------------------HHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-h----
Q 001255 1038 ---MAQLPSFLP--------------------------------ALFEAFGNQSADVRKTVVFCLVDIYIMLGK-A---- 1077 (1113)
Q Consensus 1038 ---~~~L~~lip--------------------------------~l~~~l~D~~seVRkaAv~clv~i~~~lGe-~---- 1077 (1113)
.+++..+.| ...+++.|.-+--|++++..+.+.+..+.. +
T Consensus 407 ~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~k 486 (690)
T KOG1243|consen 407 GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANK 486 (690)
T ss_pred HHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhh
Confidence 233333332 345678888888899999999888888872 3
Q ss_pred hHhhhhcC--Ch------hhHhhHHHHHHhhhcc
Q 001255 1078 FLPYLERL--NS------TQLRLVTIYANRISQA 1103 (1113)
Q Consensus 1078 i~p~l~~L--~~------s~~kLl~~yi~R~~~~ 1103 (1113)
++|-+..| ++ .-.+.++.|+.+..+.
T Consensus 487 Ilp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 487 ILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred ccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 44444333 11 2256788888777654
No 184
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=80.12 E-value=8.9 Score=44.04 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH--HHHHHHHHHHH
Q 001255 897 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHV 974 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~--~~~~l~~ll~~ 974 (1113)
|.--.++.+++.. . + .+-++.+..|.++|+..++.|..+||.+|..+..+.|.+|... -..|...|...
T Consensus 26 W~~IlDvCD~v~~----~-~----~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al 96 (462)
T KOG2199|consen 26 WSLILDVCDKVGS----D-P----DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRAL 96 (462)
T ss_pred HHHHHHHHHhhcC----C-C----cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHH
Confidence 6655555555431 1 1 2345668889999999999999999999999999999887543 33455555555
Q ss_pred hC-CChHHHHHHHHHHHHHHHhhcChhh---HHHHhhhhh
Q 001255 975 TK-DAVPKVSNEAEHCLTVVLSQYDPFR---CLSVIVPLL 1010 (1113)
Q Consensus 975 ~~-Ds~~~Vr~aa~~~l~~l~~~~~p~~---~l~~l~~~l 1010 (1113)
+. -.+..|++.....++.|+..|.-+. ++..|..-|
T Consensus 97 ~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~l~~kl 136 (462)
T KOG2199|consen 97 IESKAHPKVCEKMRDLVKEWSEEFKKDPSLSLISALYKKL 136 (462)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHH
Confidence 55 4578999999999999999886553 444443333
No 185
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=80.01 E-value=27 Score=40.61 Aligned_cols=110 Identities=17% Similarity=0.312 Sum_probs=73.7
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHH----HHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLF----FQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM 569 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l----~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l 569 (1113)
.|-+.+=..|.+||+.|+. ..+++. =+..++..+ +..+.+ |.-++...+.++..|+..-.-.+++|+
T Consensus 186 a~~~~~~~~r~~aL~sL~t-----D~gl~~---LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~le~Yl 256 (343)
T cd08050 186 ALVGSNEEKRREALQSLRT-----DPGLQQ---LLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLHLEPYL 256 (343)
T ss_pred HHhCCCHHHHHHHHHHhcc-----CCCchh---hhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCchHHhH
Confidence 3456778889999999876 444442 223333322 222333 666777778888888877655679999
Q ss_pred HHHHHHHHHHhc----CCch------hhHHHHHHHHHHHHhhCCcc--chHHHHH
Q 001255 570 ERILPHVFSRLI----DPKE------LVRQPCSTTLDIVSKTYSVD--SLLPALL 612 (1113)
Q Consensus 570 ~~ll~~ll~klg----D~K~------~vr~~a~~~L~~i~e~~~~~--~~l~~l~ 612 (1113)
..++|.++.++- +..+ .+|+-|...|..+...|+.. .+.+.|+
T Consensus 257 h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~ 311 (343)
T cd08050 257 HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRIT 311 (343)
T ss_pred HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence 999999999882 2222 57888999999888877654 2444444
No 186
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.96 E-value=1.1e+02 Score=35.40 Aligned_cols=142 Identities=20% Similarity=0.210 Sum_probs=79.8
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchh--hHHhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhchhh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSI--WTKYFNQILTAVLEVLD-DADSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~--~~~~f~~ll~~Ll~~L~-D~n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
.-++..+.+.+ ...|..|+.-|..+++.+.+.. ..+.+ -+..|+..|. |.+-.+|.+||..+..+.++..+.
T Consensus 127 ~~ll~~l~~~~---~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~--~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g 201 (342)
T KOG2160|consen 127 VPLLGYLENSD---AELRELAARVIGTAVQNNPKSQEQVIELG--ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG 201 (342)
T ss_pred HHHHHHhcCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHcc--cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH
Confidence 44555555544 4789999988888887775421 11111 4555666664 334458899999999999998776
Q ss_pred hhhHHHH-HHHHHHHHhCC--ChHHHHHHHHHHHHHHHhhcChh-------hHHHHhhhhhccCChhHHHHHHHHHHHHH
Q 001255 960 MEDSVEI-VIEKLLHVTKD--AVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTCINCLTKLV 1029 (1113)
Q Consensus 960 ~~~~~~~-~l~~ll~~~~D--s~~~Vr~aa~~~l~~l~~~~~p~-------~~l~~l~~~l~s~~~~~~~~al~~L~~li 1029 (1113)
...|... =+..|++++.+ .....+..+...+..++..-... .+..++..++.+-++..+..|+..+..++
T Consensus 202 ~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 202 QDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 6555331 13334445544 22334444555555555432221 12222333334556666666665444444
No 187
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.70 E-value=24 Score=43.62 Aligned_cols=143 Identities=19% Similarity=0.196 Sum_probs=95.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh-----hhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHH----HHhhcC
Q 001255 928 TAVLEVLDDADSSVREVALSLINEMLKNQKDV-----MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTV----VLSQYD 998 (1113)
Q Consensus 928 ~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~-----~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~----l~~~~~ 998 (1113)
..|.+.|.-.|..||..|+.++-+++---++. ++.-++--.-.+...+.|.-+.||..|...+-- +...+|
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 34667777789999999999888876543332 334455555566677889999999887665532 335567
Q ss_pred hhhHHHHhhhhhcc----CChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001255 999 PFRCLSVIVPLLVT----EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 999 p~~~l~~l~~~l~s----~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~ 1073 (1113)
+..+..++.-++.. .-...+...++.|..++.. +.+.+.|..++|.+--.++|....||-|++..+..|-.|
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 76555554443321 1123444556666665522 344566788889999999999999999999988766443
No 188
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.54 E-value=40 Score=42.36 Aligned_cols=126 Identities=11% Similarity=0.213 Sum_probs=87.5
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCch--hhHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHS--IWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~--~~~~~f~~ll~~Ll~~L~D-~n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
..+++.+.+.+|. ..|.++.+.+.-.+.+-++. .+.+.+..+...|++.+.. .....|...|++|..|...++..
T Consensus 529 ~a~lnLL~d~~D~--vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 529 CAFLNLLQDQNDL--VVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHHhcCccccc--eeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 5667777777764 68999999998888777653 3344455555555555543 23446778899999999999888
Q ss_pred hhhHHHHH---HHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh--hHHHHhhhhhc
Q 001255 960 MEDSVEIV---IEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--RCLSVIVPLLV 1011 (1113)
Q Consensus 960 ~~~~~~~~---l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~--~~l~~l~~~l~ 1011 (1113)
+.+|+..+ +|.+-+-.. .++-.|-+...++..++..++.. -+-+++.|+++
T Consensus 607 I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIe 662 (978)
T KOG1993|consen 607 IAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIE 662 (978)
T ss_pred hhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 88876544 444444332 44567888888889998887653 47788888876
No 189
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.15 E-value=16 Score=45.68 Aligned_cols=174 Identities=17% Similarity=0.196 Sum_probs=111.2
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHH
Q 001255 885 ILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSV 964 (1113)
Q Consensus 885 lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~ 964 (1113)
+++--.+.| |.-|.-|+..+. .+. ...-.+-+...|...+.|.++-+|..+..++..+..--+..++.
T Consensus 91 ~~kD~~d~n---p~iR~lAlrtm~-~l~------v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~-- 158 (734)
T KOG1061|consen 91 FLKDCEDPN---PLIRALALRTMG-CLR------VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED-- 158 (734)
T ss_pred hhccCCCCC---HHHHHHHhhcee-eEe------ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc--
Confidence 344444445 778888887643 121 22334555666888999999999998877777766543333332
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh---h----hHHHHhhhhh-ccCChhHHHHHHHHHHHHHHhhCHHH
Q 001255 965 EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP---F----RCLSVIVPLL-VTEDEKTLVTCINCLTKLVGRLSQEE 1036 (1113)
Q Consensus 965 ~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p---~----~~l~~l~~~l-~s~~~~~~~~al~~L~~lie~~~~~~ 1036 (1113)
..++..|-+.+.|+.+.|+..|..++..|.+.-+- . .++..++.-+ .-.+|. -+.+|..+++..+.+.
T Consensus 159 ~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~----qi~IL~~l~~y~p~d~ 234 (734)
T KOG1061|consen 159 SGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWG----QIFILDCLAEYVPKDS 234 (734)
T ss_pred cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhh----HHHHHHHHHhcCCCCc
Confidence 33566666777799999999999999999877431 1 1121111111 122442 2556666776666544
Q ss_pred HHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 001255 1037 LMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1037 l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe 1076 (1113)
..+-.++.-+...+.|.++.|=-.+++.+......+.+
T Consensus 235 --~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 235 --REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred --hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 22456677788888999999999999988776666554
No 190
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=78.10 E-value=12 Score=40.03 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=66.6
Q ss_pred CChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCC
Q 001255 977 DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQS 1056 (1113)
Q Consensus 977 Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~ 1056 (1113)
|.-..+=.-+..++..+.... ....+.+..++.+++.=.+..++-++...+.. ..+..++..+...+.|.+
T Consensus 98 ~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~~ 168 (213)
T PF08713_consen 98 DNWATCDSLCSKLLGPLLKKH--PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDEE 168 (213)
T ss_dssp CCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS-
T ss_pred CcchhhhHHHHHHHHHHHHhh--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCch
Confidence 443333333466666555443 56788888999877644445555444444433 334556677888889999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhhhc
Q 001255 1057 ADVRKTVVFCLVDIYIMLGKAFLPYLER 1084 (1113)
Q Consensus 1057 seVRkaAv~clv~i~~~lGe~i~p~l~~ 1084 (1113)
--||++.-.+|-.+...-.+.+.+||..
T Consensus 169 ~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 169 YYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999999999999998888888898876
No 191
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=78.01 E-value=72 Score=37.56 Aligned_cols=170 Identities=16% Similarity=0.206 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCC
Q 001255 898 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD 977 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~D 977 (1113)
.||..||+=++.++...+... .-=..+...+....++.+-..|..|+.+|.+|+-..+.-+... .-+..+++.+.|
T Consensus 83 ~ER~QALkliR~~l~~~~~~~--~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~--gG~~~L~~~l~d 158 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAEC--GGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHc--CCHHHHHHHHHh
Confidence 699999999998887643210 1124456777888888888899999999999998666543222 122444455555
Q ss_pred ChHHHHHHHHHHHHHHHhhc------Chh-hHHHHhhhhhcc-----CCh---hHHHHHHHHHHHHHHhhCHHH--HHhh
Q 001255 978 AVPKVSNEAEHCLTVVLSQY------DPF-RCLSVIVPLLVT-----EDE---KTLVTCINCLTKLVGRLSQEE--LMAQ 1040 (1113)
Q Consensus 978 s~~~Vr~aa~~~l~~l~~~~------~p~-~~l~~l~~~l~s-----~~~---~~~~~al~~L~~lie~~~~~~--l~~~ 1040 (1113)
..-++.+....++-.+...- .+. .+=.++.|+... ++. .....|-+.+..++..|+.=- +...
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 43334444444444444321 111 111122333322 111 234456677888888886311 1111
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1041 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1041 L~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
. ..+..++.++.-+..++|+.....+-.+..
T Consensus 239 ~-~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 239 F-RGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred c-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 1 345678889999999999999987666553
No 192
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=77.92 E-value=8.3 Score=46.31 Aligned_cols=180 Identities=15% Similarity=0.185 Sum_probs=100.5
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcC--------cchHHHHHHHHHHHHHH
Q 001255 487 SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDD--------PHHKVAQAALSTLADII 558 (1113)
Q Consensus 487 ~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~D--------sn~kV~~~~L~~l~~l~ 558 (1113)
.||+. .|-+.|=..|.+||+.|+. +.+++ .++.-|+..++| .|..+....+.++-.|.
T Consensus 210 ~~It~--a~~g~~~~~r~eAL~sL~T-----DsGL~-------~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl 275 (576)
T KOG2549|consen 210 KEITE--ACTGSDEPLRQEALQSLET-----DSGLQ-------QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL 275 (576)
T ss_pred HHHHH--HHhcCCHHHHHHHHHhhcc-----CccHH-------HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh
Confidence 46666 5677999999999999886 44444 344444444443 34444455555555555
Q ss_pred HhhCcchHHHHHHHHHHHHHHhc-CC---------chhhHHHHHHHHHHHHhhCCccc--hHHHHHHh----hccC-CCH
Q 001255 559 PSCRKPFESYMERILPHVFSRLI-DP---------KELVRQPCSTTLDIVSKTYSVDS--LLPALLRS----LDEQ-RSP 621 (1113)
Q Consensus 559 ~~~~~~~~~~l~~ll~~ll~klg-D~---------K~~vr~~a~~~L~~i~e~~~~~~--~l~~l~~~----~~~~-knp 621 (1113)
..-.-.+++|+..|+|.|+.|+- -. ---+|+-|...|..+...|+-.. +-+.|.++ +.|. +.+
T Consensus 276 ~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 276 DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 44334569999999999999873 11 12268888888888887666432 33344433 3344 333
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCChhhHHHHHHhHccccCC---CCHHHHHHHHHHHHHHHhhc
Q 001255 622 KAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHD---KNTKLKEAAITCIISVYTHY 684 (1113)
Q Consensus 622 kvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d---~n~~VR~aA~~~L~~l~~~~ 684 (1113)
-..-.++.-|.+ |....+. -+.. .+++.+...+-.-+.. .|.-.+..|..+-..|+.+.
T Consensus 356 st~YGai~gL~~-lg~~~I~--~~il-p~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~ 417 (576)
T KOG2549|consen 356 STHYGAIAGLSE-LGHEVIR--TVIL-PNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAE 417 (576)
T ss_pred hhhhhHHHHHHH-hhhhhhh--heec-cchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHh
Confidence 444444443322 1100000 0011 2334444444443333 45555777777777777654
No 193
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=77.76 E-value=94 Score=35.77 Aligned_cols=133 Identities=13% Similarity=0.237 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhchh---hhhhHHHHHHHHHHHHhCCChHHHHHH-HHHHHHHHHhhcCh----h------hHHHHhhhh
Q 001255 944 VALSLINEMLKNQKD---VMEDSVEIVIEKLLHVTKDAVPKVSNE-AEHCLTVVLSQYDP----F------RCLSVIVPL 1009 (1113)
Q Consensus 944 ~aL~~L~~L~~~~~~---~~~~~~~~~l~~ll~~~~Ds~~~Vr~a-a~~~l~~l~~~~~p----~------~~l~~l~~~ 1009 (1113)
.-|+++......... -.+.++..++..++.-+.++.+..|+. +..++.+++..++. . .++....++
T Consensus 46 eIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~M 125 (319)
T PF08767_consen 46 EILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPM 125 (319)
T ss_dssp HHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 345555555553321 134556666666666666554444443 33444444433322 1 234444555
Q ss_pred hccC--Chh-HHHHHHHHHHHHHHhhCHHHH---HhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 001255 1010 LVTE--DEK-TLVTCINCLTKLVGRLSQEEL---MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1010 l~s~--~~~-~~~~al~~L~~lie~~~~~~l---~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe 1076 (1113)
+..+ ++| .+..-.++|..+++.+..--+ ......++..+.-++.|.+.+|-..+..++..+..-+.+
T Consensus 126 I~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 126 INKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 5432 455 455556999999887754322 134677889999999999999999999999888876654
No 194
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.75 E-value=38 Score=42.06 Aligned_cols=132 Identities=18% Similarity=0.191 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh--
Q 001255 923 FNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-- 1000 (1113)
Q Consensus 923 f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-- 1000 (1113)
...++..|++-...++..||-.+|.+|..|....+..=+.-+..++.+++..+.|..+.||-.|--|+..+-.--.-+
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~ 162 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC 162 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc
Confidence 455566677777778888999999999999885554444567788999999999999999999998887765321111
Q ss_pred hHHHHhhhhhccC-ChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 001255 1001 RCLSVIVPLLVTE-DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCL 1067 (1113)
Q Consensus 1001 ~~l~~l~~~l~s~-~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~cl 1067 (1113)
.+...+...++.+ +...+..++-++ . .-+.-.|.++....|-+..+||.++.-+
T Consensus 163 ~v~n~l~~liqnDpS~EVRRaaLsnI---~----------vdnsTlp~IveRarDV~~anRrlvY~r~ 217 (892)
T KOG2025|consen 163 PVVNLLKDLIQNDPSDEVRRAALSNI---S----------VDNSTLPCIVERARDVSGANRRLVYERC 217 (892)
T ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhh---c----------cCcccchhHHHHhhhhhHHHHHHHHHHh
Confidence 2344444444432 222333332211 0 0123347788888888889998877533
No 195
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=77.60 E-value=20 Score=44.07 Aligned_cols=142 Identities=14% Similarity=0.174 Sum_probs=96.9
Q ss_pred HHHHHhcCCCCCC--ChhHHHHHHHHH---HHHHhcCCCchhHHHHhHHHHHHHH-HH---hhc--------CcchHHHH
Q 001255 486 LSDALSEGLSPSS--DWCARVSAFNYL---RSLLQQGPKGIQEVIQNFEKVMKLF-FQ---HLD--------DPHHKVAQ 548 (1113)
Q Consensus 486 ~~e~l~~~~~~s~--nWkeR~eal~~L---~~~l~~~~~~~~~v~~~l~~l~~~l-~~---~l~--------Dsn~kV~~ 548 (1113)
+..++..| +.+. +=|-|..||+.+ ...+..... ..+..+...+ .. .+. ..+.+.-+
T Consensus 320 ~~~i~~~~-l~~~~~~~klk~~~l~F~~~~~~~~~~~~~------~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~ 392 (501)
T PF13001_consen 320 ILQIVFDG-LYSDNTNSKLKSLALQFIRGSSWIFKHISP------QILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRS 392 (501)
T ss_pred HHHHHhcc-ccCCccccccchhcchhhhcchHHhhhcCH------HHHHHHHHHHHhcCccccccccccCCCcccHHHHH
Confidence 35666665 4455 789999999999 777776653 1233444433 22 232 12345778
Q ss_pred HHHHHHHHHHHhhCcch-HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccc-----hHHHHHHhhc----cC
Q 001255 549 AALSTLADIIPSCRKPF-ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDS-----LLPALLRSLD----EQ 618 (1113)
Q Consensus 549 ~~L~~l~~l~~~~~~~~-~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~-----~l~~l~~~~~----~~ 618 (1113)
.+-++|+.|+..+...| ++ -.++..||+.|.+.-+-+|..+++||..|..+|..-. ....+...+. ..
T Consensus 393 ~aYe~lG~L~~~~p~l~~~d--~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~ 470 (501)
T PF13001_consen 393 LAYETLGLLAKRAPSLFSKD--LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQS 470 (501)
T ss_pred HHHHHHHHHHccCccccccc--HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccc
Confidence 99999999999998777 44 4677888888876677799999999999999877522 2222222222 12
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 001255 619 RSPKAKLAVIEFAISSLN 636 (1113)
Q Consensus 619 knpkvk~~~L~~l~~~l~ 636 (1113)
..+.+|-.++.|+...+.
T Consensus 471 ~~~~~R~~avk~an~~fp 488 (501)
T PF13001_consen 471 EVRSCRYAAVKYANACFP 488 (501)
T ss_pred hhHHHHHHHHHHHHHhCC
Confidence 357899999999987664
No 196
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=77.27 E-value=29 Score=43.79 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=71.6
Q ss_pred HHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhch-h-------------hhhhHHHHHHHHHHHHhCCChHHHHHHHH
Q 001255 926 ILTAVLEVLDD----ADSSVREVALSLINEMLKNQK-D-------------VMEDSVEIVIEKLLHVTKDAVPKVSNEAE 987 (1113)
Q Consensus 926 ll~~Ll~~L~D----~n~~vr~~aL~~L~~L~~~~~-~-------------~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~ 987 (1113)
++..|++.+.. .+..++..|+-.+..|+...- . ..+.|++.+...+-++.......-+..+.
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 34444444432 356688888888888877432 1 13345555555444444443334444444
Q ss_pred HHHHHHHhhcChhhHHHHhhhhhccC---ChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhc--CCCHHHHHH
Q 001255 988 HCLTVVLSQYDPFRCLSVIVPLLVTE---DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG--NQSADVRKT 1062 (1113)
Q Consensus 988 ~~l~~l~~~~~p~~~l~~l~~~l~s~---~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~--D~~seVRka 1062 (1113)
.|| . +++....++++.+++..+ ....++.|+.-|..+...++ +.+ .+.+..-|. ..++|||-|
T Consensus 512 kaL---g-N~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-~~v-------~~~l~~I~~n~~e~~EvRia 579 (618)
T PF01347_consen 512 KAL---G-NLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-EKV-------REILLPIFMNTTEDPEVRIA 579 (618)
T ss_dssp HHH---H-HHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-HHH-------HHHHHHHHH-TTS-HHHHHH
T ss_pred HHh---h-ccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-HHH-------HHHHHHHhcCCCCChhHHHH
Confidence 444 3 334457899999999866 34467777777766654443 222 223333333 357899999
Q ss_pred HHHHHHH
Q 001255 1063 VVFCLVD 1069 (1113)
Q Consensus 1063 Av~clv~ 1069 (1113)
|+..|..
T Consensus 580 A~~~lm~ 586 (618)
T PF01347_consen 580 AYLILMR 586 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9876543
No 197
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=76.50 E-value=35 Score=40.79 Aligned_cols=70 Identities=14% Similarity=0.253 Sum_probs=47.2
Q ss_pred hHHHHhhhhhc-cCChhHHHHHHHHHHHHHHhhC--HHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1001 RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGRLS--QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1001 ~~l~~l~~~l~-s~~~~~~~~al~~L~~lie~~~--~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
.+++.|..++. +.+..+...|+.=++.++..+| ...+. .+. .=..+.+.|+|.|++||+.|..|+-.++.
T Consensus 353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~-~lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVE-QLG-GKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHH-HcC-cHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46777777774 3444455555555778887774 34443 222 22357888899999999999999988764
No 198
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=76.14 E-value=55 Score=40.90 Aligned_cols=166 Identities=17% Similarity=0.200 Sum_probs=89.9
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhchh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD----ADSSVREVALSLINEMLKNQKD 958 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D----~n~~vr~~aL~~L~~L~~~~~~ 958 (1113)
.-+.+++....- +..+..+++..+...+..... +++..+++.+.+ .+..++..|+-.+..|+...-.
T Consensus 360 ~~i~~~i~~~~~-~~~ea~~~~~~~~~~~~~Pt~--------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~ 430 (574)
T smart00638 360 KFIKQWIKNKKI-TPLEAAQLLAVLPHTARYPTE--------EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV 430 (574)
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHhhhcCCH--------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc
Confidence 334555544331 123455555555444443332 234455555544 3456888888888888874321
Q ss_pred ---hhhhH-HHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccC---ChhHHHHHHHHHHH
Q 001255 959 ---VMEDS-VEIVIEKLLHVTK----DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTE---DEKTLVTCINCLTK 1027 (1113)
Q Consensus 959 ---~~~~~-~~~~l~~ll~~~~----Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~---~~~~~~~al~~L~~ 1027 (1113)
...++ ++.+++++.+.++ +..... ...+|++|.. .+....++++.+++..+ ....+..|+.-|..
T Consensus 431 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~~~~LkaLGN-~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~ 506 (574)
T smart00638 431 NTPSCPDFVLEELLKYLHELLQQAVSKGDEEE---IQLYLKALGN-AGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRN 506 (574)
T ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCchh---eeeHHHhhhc-cCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 11111 2334444444332 222222 3445555543 45566788888888622 23578888888888
Q ss_pred HHHhhCHHHHHhhhhhHHHHHHHHhc--CCCHHHHHHHHHHHHH
Q 001255 1028 LVGRLSQEELMAQLPSFLPALFEAFG--NQSADVRKTVVFCLVD 1069 (1113)
Q Consensus 1028 lie~~~~~~l~~~L~~lip~l~~~l~--D~~seVRkaAv~clv~ 1069 (1113)
+++..+. .+.+ .+..-+. +.++|||-+|+..|..
T Consensus 507 ~a~~~p~-~v~~-------~l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 507 LAKRDPR-KVQE-------VLLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHhCch-HHHH-------HHHHHHcCCCCChHHHHHHHHHHHh
Confidence 8876653 3322 2222233 5789999999986543
No 199
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=76.07 E-value=55 Score=32.28 Aligned_cols=135 Identities=16% Similarity=0.324 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHH
Q 001255 905 QQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSN 984 (1113)
Q Consensus 905 ~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~ 984 (1113)
.-+..++...-...|...|.+++ ..+.. +.......|.+|..+.+.... |.. .+-...-+.
T Consensus 10 ~~l~~i~~~~~P~~Wp~~l~~l~----~~~~~-~~~~~~~~L~iL~~l~eEi~~----~~~----------~~~~~~r~~ 70 (148)
T PF08389_consen 10 QVLAEIAKRDWPQQWPDFLEDLL----QLLQS-SPQHLELVLRILRILPEEITD----FRR----------SSLSQERRR 70 (148)
T ss_dssp HHHHHHHHHHTTTTSTTHHHHHH----HHHHT-THHHHHHHHHHHHHHHHHHHT----SHC----------CHSHHHHHH
T ss_pred HHHHHHHHHHChhhCchHHHHHH----HHhcc-chhHHHHHHHHHHHHHHHHHh----hhc----------hhhhHHHHH
Confidence 33444444433445655444433 33333 455566677777776654332 100 001112222
Q ss_pred HHHHHHHHHHhhcChhhHHHHhhhhhccCC----hhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHH
Q 001255 985 EAEHCLTVVLSQYDPFRCLSVIVPLLVTED----EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVR 1060 (1113)
Q Consensus 985 aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~----~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVR 1060 (1113)
....++... .+.++.++...+.... ......+++++...+...+.+.+.. ..+++.+.+.+.+.+ .|
T Consensus 71 ~l~~~l~~~-----~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~~~--~~ 141 (148)
T PF08389_consen 71 ELKDALRSN-----SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQSPE--LR 141 (148)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTSCC--CH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCCHH--HH
Confidence 233333221 2334555555554211 3445567888888887555555543 347788888885554 59
Q ss_pred HHHHHHH
Q 001255 1061 KTVVFCL 1067 (1113)
Q Consensus 1061 kaAv~cl 1067 (1113)
.+|..||
T Consensus 142 ~~A~~cl 148 (148)
T PF08389_consen 142 EAAAECL 148 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999986
No 200
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=75.97 E-value=29 Score=40.11 Aligned_cols=107 Identities=19% Similarity=0.291 Sum_probs=73.6
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHH-HHHH
Q 001255 495 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM-ERIL 573 (1113)
Q Consensus 495 ~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l-~~ll 573 (1113)
.-+.||.-=++..+.+.. ... .-+..+..+.++|.-.+..|+..+|.++..++..||+.|+..+ ..=+
T Consensus 21 nT~enW~~IlDvCD~v~~----~~~-------~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F 89 (462)
T KOG2199|consen 21 NTSENWSLILDVCDKVGS----DPD-------GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDF 89 (462)
T ss_pred cccccHHHHHHHHHhhcC----CCc-------ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhH
Confidence 456778766655555433 221 2245788899999888888999999999999999999885332 2222
Q ss_pred HHHHHHhc--CCchhhHHHHHHHHHHHHhhCCccchHHHHH
Q 001255 574 PHVFSRLI--DPKELVRQPCSTTLDIVSKTYSVDSLLPALL 612 (1113)
Q Consensus 574 ~~ll~klg--D~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~ 612 (1113)
...|.+|. -.-..|+++...++.-|.|.|..|..|..+-
T Consensus 90 ~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~ 130 (462)
T KOG2199|consen 90 TTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPSLSLIS 130 (462)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 22333332 2334489999999999999998887766553
No 201
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.95 E-value=25 Score=42.42 Aligned_cols=142 Identities=17% Similarity=0.114 Sum_probs=83.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhh
Q 001255 930 VLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV-TKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVP 1008 (1113)
Q Consensus 930 Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~-~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~ 1008 (1113)
+.+.+.|.++..|-.+.-.+..-.-..|. ..++-.+|+. ..|..+.||+||.-|+..+|.- .+..++.++-+
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~-D~~~lv~tvel 593 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD-DRDLLVGTVEL 593 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEec-CcchhhHHHHH
Confidence 34555677777665443333221111111 1245556654 6899999999999999877644 55556666655
Q ss_pred hhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcC
Q 001255 1009 LLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERL 1085 (1113)
Q Consensus 1009 ~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L 1085 (1113)
...+-+...+.+.--.|+.....-|.. ..+..|-..+.|+..-||.+|.-++.-|....-+++.|.+..+
T Consensus 594 Ls~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I 663 (926)
T COG5116 594 LSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRI 663 (926)
T ss_pred hhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHH
Confidence 556666655543333344333333322 2233455556899999999998777666665555555544443
No 202
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=75.60 E-value=19 Score=36.97 Aligned_cols=146 Identities=14% Similarity=0.257 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH--HHhh
Q 001255 922 YFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT--KDAVPKVSNEAEHCLTV--VLSQ 996 (1113)
Q Consensus 922 ~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~--~Ds~~~Vr~aa~~~l~~--l~~~ 996 (1113)
.|-+||..|+..|+.. +..+|..++++|+-|= .+++|.--.+..-.+.. .+..........-.... -.+.
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-----ALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee 81 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILG-----ALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEE 81 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----ccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHH
Confidence 3678888899888644 5779999999988753 24554322111111100 11111111111100000 0111
Q ss_pred cChhhHHHHhhhhhccCChhH-HHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001255 997 YDPFRCLSVIVPLLVTEDEKT-LVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 997 ~~p~~~l~~l~~~l~s~~~~~-~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~ 1073 (1113)
+=|.-++..|+.+++...... -..++..+..+++..+... -+.|+.++|.+...+...++..|..-..-|..+...
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 223345666677776432211 1134666677777777555 588999999999999988887777765555555443
No 203
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=75.19 E-value=54 Score=37.99 Aligned_cols=161 Identities=19% Similarity=0.211 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch-hhhhhHHHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHh---
Q 001255 924 NQILTAVLEVLDDADSSVREVALSLINEMLKNQK-DVMEDSVEIVIEKLLHVTK----DAVPKVSNEAEHCLTVVLS--- 995 (1113)
Q Consensus 924 ~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~-~~~~~~~~~~l~~ll~~~~----Ds~~~Vr~aa~~~l~~l~~--- 995 (1113)
+.++..+.+-|.|+...+|..-+..+..++.... .....+++.++|.+++.+. .+-.........|+-.++.
T Consensus 60 ~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~ 139 (339)
T PF12074_consen 60 KKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSS 139 (339)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhcc
Confidence 4566778888899998899888888888776211 2356777788888887663 4433322111122221111
Q ss_pred ----------------hcChhhHHHHhhhhhccC--ChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCC--
Q 001255 996 ----------------QYDPFRCLSVIVPLLVTE--DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ-- 1055 (1113)
Q Consensus 996 ----------------~~~p~~~l~~l~~~l~s~--~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~-- 1055 (1113)
...+..-+ ++.+-+-++ ......-.++.+..++..+...........+-..++-.+.++
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~kps~-ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~ 218 (339)
T PF12074_consen 140 WKLDKIDSKNISFWSLALDPKPSF-LLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNV 218 (339)
T ss_pred ccchhhhhhhhhhhhhccCCCcch-hcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCC
Confidence 01111000 011111111 111222234444444444332211111233445566677777
Q ss_pred CHHHHHHHHHHHHHHHHHhh--------hhhHhhhhcC
Q 001255 1056 SADVRKTVVFCLVDIYIMLG--------KAFLPYLERL 1085 (1113)
Q Consensus 1056 ~seVRkaAv~clv~i~~~lG--------e~i~p~l~~L 1085 (1113)
..+||+.|..++-.+|..-+ ++++.++...
T Consensus 219 ~~~vR~~A~~~l~~l~~~~~~~l~~~li~~l~~~l~~~ 256 (339)
T PF12074_consen 219 SWKVRRAALSALKKLYASNPELLSKSLISGLWKWLSSS 256 (339)
T ss_pred CHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhc
Confidence 89999999999999887543 2566666544
No 204
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.18 E-value=2.3e+02 Score=35.61 Aligned_cols=115 Identities=13% Similarity=0.179 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhC-CCh
Q 001255 901 HGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK-DAV 979 (1113)
Q Consensus 901 ~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~-Ds~ 979 (1113)
.+.|-+...++-.-+.+ .+-+-+-...|-..|.+...++|=.||+-+..|+..-.. ..-++.-...||+.++ +..
T Consensus 307 naVLFeaI~l~~h~D~e--~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--~davK~h~d~Ii~sLkterD 382 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSE--PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFS--IDAVKKHQDTIINSLKTERD 382 (938)
T ss_pred HHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccch--HHHHHHHHHHHHHHhccccc
Confidence 34455555544332221 123444456677788889999999999999999886221 1123333455566666 666
Q ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHH
Q 001255 980 PKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLV 1019 (1113)
Q Consensus 980 ~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~ 1019 (1113)
-.||+.|.+.+=+++..-+...++.-+..+|.+.++.++-
T Consensus 383 vSirrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sire 422 (938)
T KOG1077|consen 383 VSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIRE 422 (938)
T ss_pred hHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHH
Confidence 7899999999999999988888888888888887776543
No 205
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=75.06 E-value=1.5e+02 Score=33.54 Aligned_cols=103 Identities=19% Similarity=0.230 Sum_probs=68.4
Q ss_pred HHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-
Q 001255 923 FNQILTAV-LEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF- 1000 (1113)
Q Consensus 923 f~~ll~~L-l~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~- 1000 (1113)
+..++..| ...+...+..||+.|+++|+..+---.. .+...++-++..+......|+..|..++--++..+++.
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~----~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE----LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 34555554 4666677889999999999987763333 34444444444443336888888888887666665542
Q ss_pred --------------hHHHHhhhhhccCChhHHHHHHHHHHHHH
Q 001255 1001 --------------RCLSVIVPLLVTEDEKTLVTCINCLTKLV 1029 (1113)
Q Consensus 1001 --------------~~l~~l~~~l~s~~~~~~~~al~~L~~li 1029 (1113)
.+++++..++.+.+......+.+.+.+|+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 36666777777666666677778887766
No 206
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.00 E-value=1.6e+02 Score=37.43 Aligned_cols=151 Identities=19% Similarity=0.293 Sum_probs=96.9
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCC------chhhHHhHH-----------HHHHHHHHHhcCCCHHHHHH
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAND------HSIWTKYFN-----------QILTAVLEVLDDADSSVREV 944 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~------~~~~~~~f~-----------~ll~~Ll~~L~D~n~~vr~~ 944 (1113)
+..+++-|...-.+ ++--+-+|+-+..++..+. ......+|+ +.+..|+..+...|-.||..
T Consensus 63 mk~li~vL~~D~~D-~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~ 141 (970)
T KOG0946|consen 63 MKPLIQVLQRDYMD-PEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLY 141 (970)
T ss_pred cHHHHHHHhhccCC-HHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhH
Confidence 34555555544333 3445556666655554331 111111222 23445667777778899999
Q ss_pred HHHHHHHHHHhchhhhhhH---HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-------hHHHHhhhhhccC-
Q 001255 945 ALSLINEMLKNQKDVMEDS---VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTE- 1013 (1113)
Q Consensus 945 aL~~L~~L~~~~~~~~~~~---~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-------~~l~~l~~~l~s~- 1013 (1113)
+..+|..|+...|..+... ...-+.+++..+.|+...||.+|.-.+-.++..++.- -.|.-|..+|...
T Consensus 142 aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 142 AIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG 221 (970)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999988776554 3456788899999999999999999998888776542 2455556666532
Q ss_pred ---ChhHHHHHHHHHHHHHHhhC
Q 001255 1014 ---DEKTLVTCINCLTKLVGRLS 1033 (1113)
Q Consensus 1014 ---~~~~~~~al~~L~~lie~~~ 1033 (1113)
.+-.--.|+.+|-.|+....
T Consensus 222 g~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 222 GLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred CCCCcchHHHHHHHHHHHHhhCc
Confidence 22344567777777765443
No 207
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.97 E-value=55 Score=41.24 Aligned_cols=170 Identities=13% Similarity=0.154 Sum_probs=111.8
Q ss_pred CChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHhch
Q 001255 880 PSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLD-D-ADSSVREVALSLINEMLKNQK 957 (1113)
Q Consensus 880 ~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~-D-~n~~vr~~aL~~L~~L~~~~~ 957 (1113)
+.|+.|...+....- .++|++|+..|-.+.+.-...+..... ..|+..|. | .++.+...+|.+|-.++.+-.
T Consensus 22 ETI~kLcDRvessTL--~eDRR~A~rgLKa~srkYR~~Vga~Gm----k~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTL--LEDRRDAVRGLKAFSRKYREEVGAQGM----KPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred hHHHHHHHHHhhccc--hhhHHHHHHHHHHHHHHHHHHHHHccc----HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 346777777776654 488999999988777654433333333 33444442 3 256667777777777665322
Q ss_pred hhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHH
Q 001255 958 DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL 1037 (1113)
Q Consensus 958 ~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l 1037 (1113)
. | +...|+. ++..-.......+... ...+..|+..+...++..|+.++++++.++...|++.=
T Consensus 96 ~----------~---~v~dds~-qsdd~g~~iae~fik~---qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q 158 (970)
T KOG0946|consen 96 S----------P---EVMDDST-QSDDLGLWIAEQFIKN---QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQ 158 (970)
T ss_pred c----------h---hhcccch-hhhHHHHHHHHHHHcC---chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHH
Confidence 0 1 1123443 5555566666665544 34556667888888999999999999999988886432
Q ss_pred H--hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1038 M--AQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1038 ~--~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
. -..|.-|--+..-+.|.---||..|+..|.++-+
T Consensus 159 ~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k 195 (970)
T KOG0946|consen 159 DALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVK 195 (970)
T ss_pred HHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHc
Confidence 1 2346666677888889999999999998877654
No 208
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=74.16 E-value=30 Score=33.90 Aligned_cols=95 Identities=17% Similarity=0.343 Sum_probs=65.6
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhh---cCcchHHHHHHHHHHHHHHHhhCcchHHHHHHH
Q 001255 496 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHL---DDPHHKVAQAALSTLADIIPSCRKPFESYMERI 572 (1113)
Q Consensus 496 ~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l---~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~l 572 (1113)
.+.+|----.-|.+|.+.--+. .++.++++.|.++| ..+++++...+|.+|..|+....+.|-.|+..-
T Consensus 13 ~~d~~gp~~~~l~eIa~~t~~~--------~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~ 84 (125)
T PF01417_consen 13 SNDPWGPPGKLLAEIAQLTYNS--------KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDH 84 (125)
T ss_dssp SSSSSS--HHHHHHHHHHTTSC--------HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHhcc--------ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 4557766666666655543221 36788999999999 779999999999999999999888888888655
Q ss_pred HHHHHHHhc-----CC--ch---hhHHHHHHHHHHHH
Q 001255 573 LPHVFSRLI-----DP--KE---LVRQPCSTTLDIVS 599 (1113)
Q Consensus 573 l~~ll~klg-----D~--K~---~vr~~a~~~L~~i~ 599 (1113)
+.. +..|. |. ++ .||++|.+.++.+.
T Consensus 85 ~~~-I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 85 IDI-IRELQDFQYVDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHH-HHGGGG---BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHH-HhhcceeeccCCCCccHHHHHHHHHHHHHHHhC
Confidence 443 33322 21 22 38888888887664
No 209
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.05 E-value=55 Score=42.49 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHhcCCchhhHHhH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhch-hhhhhHHHHHHHHHHH
Q 001255 897 PTSKHGALQQLIKASVANDHSIWTKYF-NQILTAVLEVLDDA-DSSVREVALSLINEMLKNQK-DVMEDSVEIVIEKLLH 973 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~~~~~f-~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~-~~~~~~~~~~l~~ll~ 973 (1113)
.++|..|.--|.-++..-.. -...++ +.++..+++.|.|. .+-+|+-.+.+|+.|-.... .+|.---...-.+|+.
T Consensus 571 ~EqrtmaAFVLAviv~nf~l-GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKL-GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred HHHHHHHHHHHHHHHcccch-hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 36777777677666654321 122233 55677788999885 57799999999999988653 4444444456678888
Q ss_pred HhCCChHHHHHHHHHHHHHHHhhc
Q 001255 974 VTKDAVPKVSNEAEHCLTVVLSQY 997 (1113)
Q Consensus 974 ~~~Ds~~~Vr~aa~~~l~~l~~~~ 997 (1113)
.+.|+.++||.||.-|+.+++...
T Consensus 650 ~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 650 LLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HhcCccHHHHHHHHHHHHHHhccc
Confidence 899999999999999999998763
No 210
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=73.47 E-value=59 Score=37.70 Aligned_cols=112 Identities=13% Similarity=0.241 Sum_probs=82.2
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCC---chhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAND---HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD 958 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~---~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~ 958 (1113)
+..+.+.+...+ -+.-.+|+..+.+++..+. ...+..||++.+...-..|...|=.++.++|.+|++|+..-..
T Consensus 166 f~~ff~~~~~~~---Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n 242 (335)
T PF08569_consen 166 FWKFFKYVQLPN---FDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSN 242 (335)
T ss_dssp GGGHHHHTTSSS---HHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHhcCCc---cHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhH
Confidence 344555555444 3788889999999887664 3456788999999888888888999999999999999975432
Q ss_pred --hhhhHHH--HHHHHHHHHhCCChHHHHHHHHHHHHHHHhh
Q 001255 959 --VMEDSVE--IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ 996 (1113)
Q Consensus 959 --~~~~~~~--~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~ 996 (1113)
-+..|+. .-|-.++..++|+.+.|+-.|-...+.++.+
T Consensus 243 ~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 243 FNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 2345532 3566667789999999999999999988876
No 211
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.42 E-value=42 Score=43.94 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=82.2
Q ss_pred HHHHHHHhhhhhhHHHHHhHHHHHHHHhhhCCCcccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCchhhhhcHHHH
Q 001255 66 FIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLY 145 (1113)
Q Consensus 66 ~lp~Ll~~~~~t~kvi~~sa~~ai~~ii~~~~~~r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l 145 (1113)
-+-.|+.+.+++-..+- -...-|..|+..|-++|. .|=.|.+|..|.+.|...++.++.. .+. +.|
T Consensus 262 rle~Ll~~r~etqe~~d-~i~~mi~~if~sVFVHRY---------RDV~~~IRaiCiqeLgiWi~~yP~~-Fl~---dsY 327 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQD-EIESMINDIFDSVFVHRY---------RDVDPDIRAICIQELGIWIKSYPEI-FLS---DSY 327 (1048)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhhheeeeec---------ccCchHHHHHHHHHHHHHHHhccHH-Hhc---chH
Confidence 56778888887766643 566677777777765553 3556789999999999999999864 553 356
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhh--ChHHHHHHHhcCCHHHHHHH
Q 001255 146 EDLIRCCVADAMSEVRSTARMCYRMFAKT--WPERSRRLFSSFDPAIQRII 194 (1113)
Q Consensus 146 ~~~i~k~l~Da~~eVR~~AR~a~~~~~~~--~p~~a~~ll~~Ld~~~~k~l 194 (1113)
.+-|..+|+|.+.+||..+-+++-.|... +-...+.|.+.+-..+-...
T Consensus 328 LKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa 378 (1048)
T KOG2011|consen 328 LKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA 378 (1048)
T ss_pred HHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 77799999999999999999988877666 22234445555544433333
No 212
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.22 E-value=2.8e+02 Score=35.68 Aligned_cols=167 Identities=19% Similarity=0.247 Sum_probs=100.7
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCC-chhHHHHhHHHHHHHHHHhhcC-cchHHHHHHHHHHHHHHHhhCcc
Q 001255 487 SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPK-GIQEVIQNFEKVMKLFFQHLDD-PHHKVAQAALSTLADIIPSCRKP 564 (1113)
Q Consensus 487 ~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~-~~~~v~~~l~~l~~~l~~~l~D-sn~kV~~~~L~~l~~l~~~~~~~ 564 (1113)
...|+ |+-+.+|=..-+++|.+|-+.|--++. .+.. --++-++..|+..|++ .|+-++..|..+|.++..+++.-
T Consensus 170 kkLL~-gL~~~~Des~Qleal~Elce~L~mgnEesLs~--fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 170 KKLLQ-GLQAESDESQQLEALTELCEMLSMGNEESLSG--FPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHH-hccccCChHHHHHHHHHHHHHHhhcchhhhcc--ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 55666 233455888889999999888876543 1111 1345678888888875 88999999999999999999765
Q ss_pred hHHHHH-HHHHHHHHHhc--CCchhhHHHHHHHHHHHHhhCCccc----hHHHHHHhhccCCCHHHHHHHHHHHHHHHhh
Q 001255 565 FESYME-RILPHVFSRLI--DPKELVRQPCSTTLDIVSKTYSVDS----LLPALLRSLDEQRSPKAKLAVIEFAISSLNK 637 (1113)
Q Consensus 565 ~~~~l~-~ll~~ll~klg--D~K~~vr~~a~~~L~~i~e~~~~~~----~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~ 637 (1113)
..-.+. ..+|.|++||- .--+ |-+.+..||+.|....+-+. .+.+++.|++ .-+--++-.+|.-+++.-.
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiD-vAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylD-FFSi~aQR~AlaiaaN~Ck- 323 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYID-VAEQSLQALEKISRRHPKAILQAGALSAVLSYLD-FFSIHAQRVALAIAANCCK- 323 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhH-HHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-
Confidence 543333 36788888884 2222 55677888888877666543 1333444443 2222233333333333222
Q ss_pred hccCCCCCCChhhHHHHHHhHccccC
Q 001255 638 HAMNSEGSGNLGILKLWLAKLTPLVH 663 (1113)
Q Consensus 638 ~~~~~~~~~~~~~~~~~l~~l~~~~~ 663 (1113)
.+.+++|. .+--.|+-+.++++
T Consensus 324 -si~sd~f~---~v~ealPlL~~lLs 345 (1051)
T KOG0168|consen 324 -SIRSDEFH---FVMEALPLLTPLLS 345 (1051)
T ss_pred -cCCCccch---HHHHHHHHHHHHHh
Confidence 45555542 23344555555553
No 213
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=72.82 E-value=75 Score=37.38 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhC-CCh--HHHHHHHHHHHHHHHhhcCh--------------hh
Q 001255 939 SSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK-DAV--PKVSNEAEHCLTVVLSQYDP--------------FR 1001 (1113)
Q Consensus 939 ~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~-Ds~--~~Vr~aa~~~l~~l~~~~~p--------------~~ 1001 (1113)
...|..|+++|..|++..+..+.+-+-.++..+++.+. ++. -.-..+|.-.+.+++....- ..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 34788899999999987665555555555666665432 222 23345555555666643311 11
Q ss_pred -HHHHhhhhhcc--CChh-HHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 001255 1002 -CLSVIVPLLVT--EDEK-TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCL 1067 (1113)
Q Consensus 1002 -~l~~l~~~l~s--~~~~-~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~cl 1067 (1113)
+-..+.|-|+. ...| .+..|++.+...-.+++++. +..++|.++.++.+.+.-|+.-|-.|+
T Consensus 305 Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~----l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQ----LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHH----HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHH----HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 22333444441 2223 45678898888888877654 566889999999999999998877664
No 214
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=72.67 E-value=41 Score=38.22 Aligned_cols=185 Identities=12% Similarity=0.146 Sum_probs=103.5
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHH-HHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHhchhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFN-QILTAVLEVLDDADSS-VREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~-~ll~~Ll~~L~D~n~~-vr~~aL~~L~~L~~~~~~~ 959 (1113)
++++.+.|...+ -++...|..++++++.......+++.++ .+.+-+.+.+....+. ..-.|-..|..++...-..
T Consensus 73 lp~lt~~l~SdD---ie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 73 LPQLTQQLFSDD---IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hHHHHHHHhhhH---HHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 466777765433 4677888888888875443222222211 1223344455332222 3445667777777633222
Q ss_pred hhhHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh-------HHHHhhhhhccCChhHHHHHHHHHHHHHHh
Q 001255 960 MEDSV-EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR-------CLSVIVPLLVTEDEKTLVTCINCLTKLVGR 1031 (1113)
Q Consensus 960 ~~~~~-~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~-------~l~~l~~~l~s~~~~~~~~al~~L~~lie~ 1031 (1113)
-+-.+ ...+|.++..+-++.+.|++.+.=||..|+.-.+..+ .+..|..++.+......+ +.-.+|++..
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ism--lRn~TWtLSN 227 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISM--LRNATWTLSN 227 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHH--HHHhHHHHHH
Confidence 11111 1256777888889999999999988887775432211 233333444433322223 5666777755
Q ss_pred hCH----HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 001255 1032 LSQ----EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1074 (1113)
Q Consensus 1032 ~~~----~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~l 1074 (1113)
+.+ ..-...+...+|.|.+.+.-.|+||=-- ++|+|-.+.
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvD---A~WAiSYls 271 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVD---ACWAISYLS 271 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHH---HHHHHHHhc
Confidence 521 1122356777899999999999998644 444544333
No 215
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.20 E-value=31 Score=42.94 Aligned_cols=156 Identities=15% Similarity=0.233 Sum_probs=92.6
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHhchhhhh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEV-LDDADSSVREVALSLINEMLKNQKDVME 961 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~-L~D~n~~vr~~aL~~L~~L~~~~~~~~~ 961 (1113)
+.++++|....+ +--|..++..+.-.-..-+ +.+ .++-|+.. ..|.|-.||..|...|+-++-.-+.
T Consensus 521 d~lI~el~~dkd--pilR~~Gm~t~alAy~GTg------nnk-air~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--- 588 (929)
T KOG2062|consen 521 DPLIKELLRDKD--PILRYGGMYTLALAYVGTG------NNK-AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--- 588 (929)
T ss_pred HHHHHHHhcCCc--hhhhhhhHHHHHHHHhccC------chh-hHHHhhcccccccchHHHHHHHHHheeeEecChh---
Confidence 445555544332 4567777766543221111 111 12334443 5799999999998888877754333
Q ss_pred hHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhh
Q 001255 962 DSVEIVIEKLLHVTKDA-VPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ 1040 (1113)
Q Consensus 962 ~~~~~~l~~ll~~~~Ds-~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~ 1040 (1113)
.+|.+++.+.++ +++||-.+.-++...|.-.+...++.+|-|++.....-.|.+|+--+.-+.-++. +.+.+.
T Consensus 589 -----~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t-~~~~pk 662 (929)
T KOG2062|consen 589 -----QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQT-EQLCPK 662 (929)
T ss_pred -----hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc-cccCch
Confidence 445555555544 5789999999999888888988899999998876655566666544443332332 333333
Q ss_pred hhhHHHHHHHHhcCCC
Q 001255 1041 LPSFLPALFEAFGNQS 1056 (1113)
Q Consensus 1041 L~~lip~l~~~l~D~~ 1056 (1113)
...+...+.+-+.|..
T Consensus 663 v~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 663 VNGFRKQLEKVINDKH 678 (929)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 4444444444444443
No 216
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.14 E-value=77 Score=41.76 Aligned_cols=139 Identities=10% Similarity=0.122 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhc
Q 001255 922 YFNQILTAVLEVLDD----ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY 997 (1113)
Q Consensus 922 ~f~~ll~~Ll~~L~D----~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~ 997 (1113)
-++.+.+.+.+.... +|+.++.+|--.|..++-- ...|-.+--.+|-.++++..+ +.||.-+..++.-++-.+
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~fces~l~llftimeksp~--p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAEFCESHLPLLFTIMEKSPS--PRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCC--ceeeecchheccchhhhc
Confidence 456666666666633 4677777776555555431 122322222334444444444 577776666665555444
Q ss_pred Ch--hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001255 998 DP--FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1068 (1113)
Q Consensus 998 ~p--~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv 1068 (1113)
|. +..=+++..-+...+...+..|+-+|+.|+-. +.+. ..--++..+.|+.|.+.+||.-|...+-
T Consensus 993 pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn---dmiK--VKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen 993 PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN---DMIK--VKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh---hhhH--hcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 43 11223344445566777888999999998822 2221 2233467889999999999999994443
No 217
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.03 E-value=1.7e+02 Score=38.09 Aligned_cols=179 Identities=14% Similarity=0.206 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhc------CC--CHHHHHHHHHHHHHHHHhch--hhhhhHHHH-HHH
Q 001255 901 HGALQQLIKASVANDHSIWTKYFNQILTAVLEVLD------DA--DSSVREVALSLINEMLKNQK--DVMEDSVEI-VIE 969 (1113)
Q Consensus 901 ~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~------D~--n~~vr~~aL~~L~~L~~~~~--~~~~~~~~~-~l~ 969 (1113)
.+|+.-|..+...-+.+ +|..++.-+..+|. .. |.--...||.+++.|+.-+- ..++.-.+. +++
T Consensus 390 ~Aa~~~l~~~~~KR~ke----~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~ 465 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKE----TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN 465 (1010)
T ss_pred HHHHHHHHHHHHhcchh----hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence 34554444444333332 34444444444443 22 34455789999999997552 445554443 455
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHh-hcChh----hHHHHhhhhhc-cCChhHHHHHHHHHHHHHHhhCH--HHHHhhh
Q 001255 970 KLLHVTKDAVPKVSNEAEHCLTVVLS-QYDPF----RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGRLSQ--EELMAQL 1041 (1113)
Q Consensus 970 ~ll~~~~Ds~~~Vr~aa~~~l~~l~~-~~~p~----~~l~~l~~~l~-s~~~~~~~~al~~L~~lie~~~~--~~l~~~L 1041 (1113)
.++=.+.++--..|.-|-..+..++. .++-. ..+......+. +.+-|.+++|.--|..++..... +.+.+++
T Consensus 466 hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hv 545 (1010)
T KOG1991|consen 466 HVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHV 545 (1010)
T ss_pred HhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhh
Confidence 66667788888888888888888873 33332 34444455555 66778888777666677755432 3488899
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcCC
Q 001255 1042 PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLN 1086 (1113)
Q Consensus 1042 ~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L~ 1086 (1113)
+.+|..+.+-+++.+.|.=. +||-.+...++|++-||-..|.
T Consensus 546 p~~mq~lL~L~ne~End~Lt---~vme~iV~~fseElsPfA~eL~ 587 (1010)
T KOG1991|consen 546 PPIMQELLKLSNEVENDDLT---NVMEKIVCKFSEELSPFAVELC 587 (1010)
T ss_pred hHHHHHHHHHHHhcchhHHH---HHHHHHHHHHHHhhchhHHHHH
Confidence 99999999999999988765 5555777778899999877664
No 218
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=71.88 E-value=15 Score=41.56 Aligned_cols=157 Identities=13% Similarity=0.198 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHH-HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh
Q 001255 922 YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVE-IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF 1000 (1113)
Q Consensus 922 ~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~-~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~ 1000 (1113)
+....+..|.+.+...++.|..-||..|.+|...-.....-.+. .+.+.|++++.+....|..-|...+..|++-....
T Consensus 240 ~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~Q 319 (526)
T COG5064 240 NISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQ 319 (526)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccc
Confidence 56677777777777777777777888888887633223332222 24566888888877788777777776666443322
Q ss_pred -------hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhC---HHHHHhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001255 1001 -------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLS---QEELMAQL-PSFLPALFEAFGNQSADVRKTVVFCLVD 1069 (1113)
Q Consensus 1001 -------~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~---~~~l~~~L-~~lip~l~~~l~D~~seVRkaAv~clv~ 1069 (1113)
-.|+.+.++|.+.+...+.+ ..|.+..+. .+.+...+ ..++|.|+..+.-.+=-+||.|..++..
T Consensus 320 TqviI~~G~L~a~~~lLs~~ke~irKE----aCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisN 395 (526)
T COG5064 320 TQVIINCGALKAFRSLLSSPKENIRKE----ACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISN 395 (526)
T ss_pred eehheecccHHHHHHHhcChhhhhhhh----hheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 14666667776655444433 335554443 23333322 4678999999999888899999888776
Q ss_pred HHHHhh--hhhHhhh
Q 001255 1070 IYIMLG--KAFLPYL 1082 (1113)
Q Consensus 1070 i~~~lG--e~i~p~l 1082 (1113)
...+-- .++.+||
T Consensus 396 atsgg~~~PD~iryL 410 (526)
T COG5064 396 ATSGGLNRPDIIRYL 410 (526)
T ss_pred hhccccCCchHHHHH
Confidence 654432 1555554
No 219
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=71.56 E-value=19 Score=37.32 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhChHHHHHHHhcCCHHHHHH
Q 001255 114 NAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRI 193 (1113)
Q Consensus 114 ~~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~~~~p~~a~~ll~~Ld~~~~k~ 193 (1113)
.-.+|..++|+|..+|...... + ....+.+.+..|+.| +.++|--+-..+..+....|+....-+..|-...++.
T Consensus 40 GLelRK~ayE~lytlLd~~~~~--~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~ 114 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSR--I--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKT 114 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSS--S---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh--C--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999976543 2 366778889999999 9999999999999999999998888788888888888
Q ss_pred Hhh
Q 001255 194 INE 196 (1113)
Q Consensus 194 l~~ 196 (1113)
|..
T Consensus 115 L~~ 117 (169)
T PF08623_consen 115 LSK 117 (169)
T ss_dssp HH-
T ss_pred hhc
Confidence 874
No 220
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=71.49 E-value=1.3e+02 Score=38.49 Aligned_cols=152 Identities=13% Similarity=0.142 Sum_probs=80.9
Q ss_pred HhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhhhhhHHH--HHHHHHHHHhCC--ChHHHHHHHHHHHHHHHh
Q 001255 921 KYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVMEDSVE--IVIEKLLHVTKD--AVPKVSNEAEHCLTVVLS 995 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~~~~~~~~--~~l~~ll~~~~D--s~~~Vr~aa~~~l~~l~~ 995 (1113)
..|.+.+.-|.+.+... +......+|.+|..|.-. .-.|..++. .++|.|.+.+.. ..+.+.-.+...+.+++.
T Consensus 486 ~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~-~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~ 564 (708)
T PF05804_consen 486 ELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIP-DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS 564 (708)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccC-CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC
Confidence 34555555566666443 343444455555554431 234555543 466666666642 233444444444445542
Q ss_pred hcCh------hhHHHHhhhhhccC--ChhHHHHHHHHHHHHHHhh-CHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHH
Q 001255 996 QYDP------FRCLSVIVPLLVTE--DEKTLVTCINCLTKLVGRL-SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFC 1066 (1113)
Q Consensus 996 ~~~p------~~~l~~l~~~l~s~--~~~~~~~al~~L~~lie~~-~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~c 1066 (1113)
.-.. ..+++.+...+.++ +...-.-.+=+.-+++-+- ..+.+... ..+...++..++|++.+||+.|-.|
T Consensus 565 d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~-~~~~~ylidL~~d~N~~ir~~~d~~ 643 (708)
T PF05804_consen 565 DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKE-TEIPAYLIDLMHDKNAEIRKVCDNA 643 (708)
T ss_pred CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhc-cchHHHHHHHhcCCCHHHHHHHHHH
Confidence 2111 13567777777654 2222222222333444221 12333222 3567889999999999999999999
Q ss_pred HHHHHHHh
Q 001255 1067 LVDIYIML 1074 (1113)
Q Consensus 1067 lv~i~~~l 1074 (1113)
|-.+..+=
T Consensus 644 Ldii~e~d 651 (708)
T PF05804_consen 644 LDIIAEYD 651 (708)
T ss_pred HHHHHHhC
Confidence 97666443
No 221
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.03 E-value=13 Score=47.61 Aligned_cols=89 Identities=18% Similarity=0.214 Sum_probs=66.6
Q ss_pred CCcccHHHHHHHhhhc-CCHHHHHHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhh-
Q 001255 97 KAVRVLPRIADCAKND-RNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKT- 174 (1113)
Q Consensus 97 ~~~r~l~~i~~~~~~~-K~~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~~~- 174 (1113)
--..+|...++.+ ++ ..+-+|+-+|.+|..+.+.+..+. +....+.--+-+...|.|.-||||.+|-=|+++|-..
T Consensus 596 l~~~li~iCle~l-nd~~~pLLrQW~~icLG~LW~d~~~Ar-w~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 596 LNGNLIGICLEHL-NDDPEPLLRQWLCICLGRLWEDYDEAR-WSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred ccccHHHHHHHHh-cCCccHHHHHHHHHHHHHHhhhcchhh-hccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 3457788777777 55 479999999999999988887663 3333333344466788999999999999999999887
Q ss_pred ---ChHHHHHHHhcCC
Q 001255 175 ---WPERSRRLFSSFD 187 (1113)
Q Consensus 175 ---~p~~a~~ll~~Ld 187 (1113)
|+++....=..++
T Consensus 674 ~d~fde~~~~~~~~~~ 689 (1387)
T KOG1517|consen 674 SDNFDEQTLVVEEEID 689 (1387)
T ss_pred ccccchhhhhhhhhhc
Confidence 7887776644444
No 222
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.89 E-value=23 Score=42.67 Aligned_cols=120 Identities=11% Similarity=0.133 Sum_probs=57.7
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHhchhhhh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEV-LDDADSSVREVALSLINEMLKNQKDVME 961 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~-L~D~n~~vr~~aL~~L~~L~~~~~~~~~ 961 (1113)
.+++++|....+ +--|..++-.+.-.-...+ +.+- ..-|+.. ..|.|-.||..|...|+-+|- +
T Consensus 518 dd~I~ell~d~d--s~lRy~G~fs~alAy~GTg------n~~v-v~~lLh~avsD~nDDVrRAAViAlGfvc~------~ 582 (926)
T COG5116 518 DDYINELLYDKD--SILRYNGVFSLALAYVGTG------NLGV-VSTLLHYAVSDGNDDVRRAAVIALGFVCC------D 582 (926)
T ss_pred HHHHHHHhcCch--HHhhhccHHHHHHHHhcCC------cchh-HhhhheeecccCchHHHHHHHHheeeeEe------c
Confidence 455666554433 2456666555443221111 1111 2223333 567788888877766665542 2
Q ss_pred hHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHH
Q 001255 962 DSVEIVIEKLLHVTKDA-VPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLV 1019 (1113)
Q Consensus 962 ~~~~~~l~~ll~~~~Ds-~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~ 1019 (1113)
.+- +++..++.+.++ +.+||-...-++...|...+-..|+.+|-+.+...+.-.+.
T Consensus 583 D~~--~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ 639 (926)
T COG5116 583 DRD--LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQ 639 (926)
T ss_pred Ccc--hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHH
Confidence 211 344455555444 24455444455555555555555555555555443333333
No 223
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.45 E-value=62 Score=43.81 Aligned_cols=135 Identities=9% Similarity=0.138 Sum_probs=102.8
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcch
Q 001255 486 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF 565 (1113)
Q Consensus 486 ~~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~ 565 (1113)
+..++. -+.-.|=.+|.-||.+|.+++.+.+... ...-++..+.++.+...|.+..|=-+..+++..++...++.+
T Consensus 43 l~~I~k--kL~KkD~~TK~KaL~eL~eli~~~~~e~--~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 43 LDIIVK--KLLKRDETTKIKALQELSELIDTSDTEE--LKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred HHHHHH--HHhccChHHHHHHHHhHHHhcccccchH--HhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 456676 5778899999999999999998865421 111256677888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHh
Q 001255 566 ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLN 636 (1113)
Q Consensus 566 ~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~ 636 (1113)
.+|++.++|..+--.-|.- ...+..+.+.+.+.|+++..-..++ +=+.+++.++.+.+.
T Consensus 119 sp~LK~li~~wl~~~~d~~---~~vs~aa~~sf~~~f~~ek~~~v~~---------~c~~~i~~~~~~~~~ 177 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLD---YPVSEAAKASFKDGFAEEKDRHVWF---------KCDPEIFYLVTEILV 177 (1312)
T ss_pred hHHHHhhhhhhhheecccc---hHHHHHHHHHHHhhcChhhhHHHHH---------HhhHHHHHHHHHHHh
Confidence 9999999999876555554 4567777888888888776554443 344566667666543
No 224
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=70.02 E-value=1.9e+02 Score=33.85 Aligned_cols=186 Identities=13% Similarity=0.083 Sum_probs=94.1
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHHHHh-cCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch--hhhhh
Q 001255 886 LHLMCNGNDGSPTSKHGALQQLIKASV-ANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK--DVMED 962 (1113)
Q Consensus 886 L~~l~~~~~~~~~~R~~AL~~L~~~l~-~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~--~~~~~ 962 (1113)
+.+..+++ .++|.++|+.+.-++. ..-...+.+++-.+...++..++.+...-...+-.++..+|-..+ ..-+.
T Consensus 66 lde~~dk~---AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee 142 (427)
T KOG2842|consen 66 LDEVKDKS---AKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEE 142 (427)
T ss_pred HHHHHhcc---hhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhH
Confidence 33444444 5899999999887665 334556678999999999999976544322222234444444444 22233
Q ss_pred HHHHHHHH--HHHHhCCChHHHHHHHHHHHHHHHhhcChh-----hHHHHhh-----hhhccCCh---------hHHHHH
Q 001255 963 SVEIVIEK--LLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-----RCLSVIV-----PLLVTEDE---------KTLVTC 1021 (1113)
Q Consensus 963 ~~~~~l~~--ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-----~~l~~l~-----~~l~s~~~---------~~~~~a 1021 (1113)
+....-|- ++..-++.....+..+..|+-..+-..-.+ .++..+. -++..++. --...|
T Consensus 143 ~~~t~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 222 (427)
T KOG2842|consen 143 WTKTLGPFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVYLEDDETVVVCACQNLGLLLTC 222 (427)
T ss_pred HHhccchHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcccCCCccccccchhHHHHHH
Confidence 33333333 333334444444555555544332221111 1111110 01111111 112234
Q ss_pred HHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 001255 1022 INCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1074 (1113)
Q Consensus 1022 l~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~l 1074 (1113)
+....+++--.+.......+..+.|.+...+.-....+|-++-..+.-++.+.
T Consensus 223 ~~~~a~~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~ 275 (427)
T KOG2842|consen 223 LTAWSLLLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELA 275 (427)
T ss_pred HHHHHHHHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHH
Confidence 44444444333222222223335677777778777888888887777666655
No 225
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=69.71 E-value=16 Score=40.55 Aligned_cols=105 Identities=16% Similarity=0.313 Sum_probs=66.0
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCc------chHHHHHHHHHHHHHHHhh
Q 001255 488 DALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDP------HHKVAQAALSTLADIIPSC 561 (1113)
Q Consensus 488 e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Ds------n~kV~~~~L~~l~~l~~~~ 561 (1113)
.+|+. ++.-+|-..|.+||++|+. .. -+.+++.-|+..|+|. |..+....+.+...+...-
T Consensus 201 kvisa-l~dEs~~~~r~aAl~sLr~-----ds-------GlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~ 267 (450)
T COG5095 201 KVISA-LLDESDEQTRDAALESLRN-----DS-------GLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNK 267 (450)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhcc-----Cc-------cHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCC
Confidence 44543 3456677789999999875 22 3456677777777653 3345555555555555543
Q ss_pred CcchHHHHHHHHHHHHHH-----hc-CCch----hhHHHHHHHHHHHHhhCCcc
Q 001255 562 RKPFESYMERILPHVFSR-----LI-DPKE----LVRQPCSTTLDIVSKTYSVD 605 (1113)
Q Consensus 562 ~~~~~~~l~~ll~~ll~k-----lg-D~K~----~vr~~a~~~L~~i~e~~~~~ 605 (1113)
.-.+++|+..++|.++.+ || +.++ .+|+-|...|..+...|+..
T Consensus 268 ~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 268 YIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred ceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 333489999988888764 44 3333 26777777777777766643
No 226
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.62 E-value=10 Score=40.25 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=60.2
Q ss_pred HHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh---hhhH
Q 001255 1003 LSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG---KAFL 1079 (1113)
Q Consensus 1003 l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG---e~i~ 1079 (1113)
|+....+|..-+++.+..|-+-++.|+...+ +.+.+.||.+|+.|..++..+|-+|-..+.+.+..+-...| .+++
T Consensus 116 Lp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLV 194 (262)
T KOG3961|consen 116 LPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALV 194 (262)
T ss_pred HHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhh
Confidence 4444455544455555555666666676666 55668899999999999999999999999999888776655 5788
Q ss_pred hhhhcC
Q 001255 1080 PYLERL 1085 (1113)
Q Consensus 1080 p~l~~L 1085 (1113)
||..+|
T Consensus 195 PfYRQl 200 (262)
T KOG3961|consen 195 PFYRQL 200 (262)
T ss_pred hHHHHh
Confidence 876554
No 227
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=69.04 E-value=1.9e+02 Score=33.04 Aligned_cols=173 Identities=17% Similarity=0.160 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHhcCCchhhHHhHH--------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHH
Q 001255 898 TSKHGALQQLIKASVANDHSIWTKYFN--------QILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIE 969 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~~~~~~~f~--------~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~ 969 (1113)
+...-.|.-+.+++.+..... +.|. .....+++.+...+..+...|+.+|..|+...+.........+++
T Consensus 72 d~v~yvL~li~dll~~~~~~~--~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~ 149 (312)
T PF03224_consen 72 DTVQYVLTLIDDLLSDDPSRV--ELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALP 149 (312)
T ss_dssp HHHHHHHHHHHHHHH-SSSSH--HHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHH--HHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHH
Confidence 456666666777776664211 1121 144556676666788899999999999998766655554456667
Q ss_pred HHHHHhCC----ChHHHHHHHHHHHHHHHhhcCh------hhHHHHhhhhh------ccCChhHHHHHHHHHHHHHHhhC
Q 001255 970 KLLHVTKD----AVPKVSNEAEHCLTVVLSQYDP------FRCLSVIVPLL------VTEDEKTLVTCINCLTKLVGRLS 1033 (1113)
Q Consensus 970 ~ll~~~~D----s~~~Vr~aa~~~l~~l~~~~~p------~~~l~~l~~~l------~s~~~~~~~~al~~L~~lie~~~ 1033 (1113)
.+++.+.+ +...+...|..|+..++..=.. ...++.+.+++ .+........-+=+.-|++. +.
T Consensus 150 ~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS-F~ 228 (312)
T PF03224_consen 150 KLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS-FE 228 (312)
T ss_dssp HHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHT-TS
T ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh-cC
Confidence 77766554 3455667788888877744111 34677777777 22223333321223335552 22
Q ss_pred HHHHHhh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1034 QEELMAQ-LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1034 ~~~l~~~-L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
.+.+... -..++|.+.+.+.+...| |-.+-|+..+...+.
T Consensus 229 ~~~~~~~~~~~~i~~L~~i~~~~~KE--KvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 229 PEIAEELNKKYLIPLLADILKDSIKE--KVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHH--SH--HHHHHHHHHHHHTTS
T ss_pred HHHHHHHhccchHHHHHHHHHhcccc--hHHHHHHHHHHHHHh
Confidence 2222110 122778888877776655 666666666666555
No 228
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.78 E-value=84 Score=39.14 Aligned_cols=142 Identities=20% Similarity=0.260 Sum_probs=98.3
Q ss_pred HHHHhhcCcchHHHHHHHHHHHHHHHhhCcch-HHHHHHHHHHHHH----HhcCCchhhHHHHHHHHHHH-H---hhCCc
Q 001255 534 LFFQHLDDPHHKVAQAALSTLADIIPSCRKPF-ESYMERILPHVFS----RLIDPKELVRQPCSTTLDIV-S---KTYSV 604 (1113)
Q Consensus 534 ~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~-~~~l~~ll~~ll~----klgD~K~~vr~~a~~~L~~i-~---e~~~~ 604 (1113)
+|-+.|.-+|..|-+.+++.+-++.+.-+++. ...++.++..=+. -|-|--+.||.-|.+.+-.+ . |..|+
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 45566888999999999999999999888777 4455555554333 33688889999766654443 3 45777
Q ss_pred cchHHHHHHhhccC---CCHHHHHHHHHHHHHHHhhhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHH
Q 001255 605 DSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVY 681 (1113)
Q Consensus 605 ~~~l~~l~~~~~~~---knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~ 681 (1113)
..+.+.+-+++++- ..-.||+.+.+-+...+. ++. .-..++..++.+-..+.|++..||=|+..+|.-|-
T Consensus 258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~----np~---sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD----NPL---SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc----Ccc---chhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 76555554444432 245899998888766543 111 11346667777777899999999999999887765
Q ss_pred h
Q 001255 682 T 682 (1113)
Q Consensus 682 ~ 682 (1113)
.
T Consensus 331 ~ 331 (1005)
T KOG1949|consen 331 A 331 (1005)
T ss_pred h
Confidence 3
No 229
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=68.74 E-value=24 Score=32.22 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 001255 925 QILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTV 992 (1113)
Q Consensus 925 ~ll~~Ll~~L~D-~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~ 992 (1113)
++|.-+...+.. .+..||+..|.++..|+...+..+..--..++..+-.+..|..+.+...|-++++.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 344455555444 46779999999999999988877766667777777777888888898888888764
No 230
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=68.71 E-value=87 Score=36.25 Aligned_cols=158 Identities=17% Similarity=0.128 Sum_probs=92.2
Q ss_pred HHhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHhhhhhhHHHHHhHH----HHHHHHhh--h
Q 001255 23 KQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELL-GDFEACAEMFIPVLFKLVVITVLVIAESSD----NCIKTMLR--N 95 (1113)
Q Consensus 23 k~l~~~l~~~l~dlRS~vv~~Ac~~l~~La~~L~-~~f~~~a~~~lp~Ll~~~~~t~kvi~~sa~----~ai~~ii~--~ 95 (1113)
+.+...|++.++|-++.|-+-=+.+++.+..... .....+++.++|.|++.+.+....-..++. .|.-.++. .
T Consensus 60 ~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~ 139 (339)
T PF12074_consen 60 KKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSS 139 (339)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhcc
Confidence 4468889999999999977777777766654222 346678889999999888554332222211 11111111 0
Q ss_pred CCCc------------------c--cHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCch--hhhhc-HHHHHHHHHHH
Q 001255 96 CKAV------------------R--VLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAP--EIQRS-ADLYEDLIRCC 152 (1113)
Q Consensus 96 ~~~~------------------r--~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~--~~~~~-~~~l~~~i~k~ 152 (1113)
..+. . +-+.++..+ .-..-..|+.++++..-... ..... ...+-+++.-+
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl-------~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~l 212 (339)
T PF12074_consen 140 WKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL-------ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYL 212 (339)
T ss_pred ccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc-------CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHH
Confidence 0010 0 001111110 11222455555555443321 11111 46788888888
Q ss_pred hcCC--ChHHHHHHHHHHHHHHhhChH-HHHHHHhcCC
Q 001255 153 VADA--MSEVRSTARMCYRMFAKTWPE-RSRRLFSSFD 187 (1113)
Q Consensus 153 l~Da--~~eVR~~AR~a~~~~~~~~p~-~a~~ll~~Ld 187 (1113)
+..+ .++||..|.+++..+...-|+ -+..+++.|.
T Consensus 213 l~s~~~~~~vR~~A~~~l~~l~~~~~~~l~~~li~~l~ 250 (339)
T PF12074_consen 213 LCSSNVSWKVRRAALSALKKLYASNPELLSKSLISGLW 250 (339)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 8888 899999999999988888888 4555665443
No 231
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.48 E-value=1.1e+02 Score=38.53 Aligned_cols=140 Identities=16% Similarity=0.219 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHhc---CCchhhHHHHHHHHHHHHhhCC-
Q 001255 528 FEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI---DPKELVRQPCSTTLDIVSKTYS- 603 (1113)
Q Consensus 528 l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ll~klg---D~K~~vr~~a~~~L~~i~e~~~- 603 (1113)
+..+.--+.+.|+-++.-|-..+|++.-+|+..+ .+++-+..+---+.+--+ |..+.-|+.-.++|-+.+-.||
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr--Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~ 392 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR--NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE 392 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc--cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH
Confidence 3444445577888999999999999999999987 566665555555554443 3445568888888888888887
Q ss_pred -ccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCCCCChhhHHH-HHHhHccccCC-CCHHHHHHHHHHHHHH
Q 001255 604 -VDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKL-WLAKLTPLVHD-KNTKLKEAAITCIISV 680 (1113)
Q Consensus 604 -~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~-~l~~l~~~~~d-~n~~VR~aA~~~L~~l 680 (1113)
...+++.|+.|+.+ -|++.-..+|.|+.+.+++| .+++. .+.+++.-+-. +++++-+.|.-.++.-
T Consensus 393 ~aatvV~~ll~fisD-~N~~aas~vl~FvrE~iek~----------p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeY 461 (948)
T KOG1058|consen 393 VAATVVSLLLDFISD-SNEAAASDVLMFVREAIEKF----------PNLRASIIEKLLETFPQIRSSKICRGALWILGEY 461 (948)
T ss_pred HHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhC----------chHHHHHHHHHHHhhhhhcccccchhHHHHHHHH
Confidence 46688889888865 67899999999999999876 33444 34445544444 7788877777777663
No 232
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=68.42 E-value=81 Score=41.19 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHH--hhcC
Q 001255 923 FNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVL--SQYD 998 (1113)
Q Consensus 923 f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~--Ds~~~Vr~aa~~~l~~l~--~~~~ 998 (1113)
...++..|+..+.|++..||..|.+.+..+..+++..+ ++.++-.+++.+. +. ...=+.+.-++..++ ....
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L---ad~vi~svid~~~p~e~-~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL---ADQVIGSVIDLFNPAED-DSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH---HHHHHHHHHHhcCcCCc-hhHHHHHHHHHHHHHhcCCcc
Confidence 33446668888999999999999999999999888544 3444555555443 22 223334444444444 3345
Q ss_pred hhh---HHHHhhhhhc--------cCChhHHHHHHHHHHH-HHHhhCHHHHHhhhhhHHHH-HHHHhcCCCHHHHHHHHH
Q 001255 999 PFR---CLSVIVPLLV--------TEDEKTLVTCINCLTK-LVGRLSQEELMAQLPSFLPA-LFEAFGNQSADVRKTVVF 1065 (1113)
Q Consensus 999 p~~---~l~~l~~~l~--------s~~~~~~~~al~~L~~-lie~~~~~~l~~~L~~lip~-l~~~l~D~~seVRkaAv~ 1065 (1113)
|.. ++|+|.-.+. +....+|-.|. .+.| +...+.+..+.+.+..+.++ |..++=|++--+|.||-.
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAc-Y~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAAC-YVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHH-HHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 554 4444433332 11112232222 3444 44455667777766666555 456777999999999999
Q ss_pred HHHHHHHH
Q 001255 1066 CLVDIYIM 1073 (1113)
Q Consensus 1066 clv~i~~~ 1073 (1113)
++-+....
T Consensus 494 AlqE~VGR 501 (1133)
T KOG1943|consen 494 ALQENVGR 501 (1133)
T ss_pred HHHHHhcc
Confidence 66655444
No 233
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=68.32 E-value=1e+02 Score=39.05 Aligned_cols=75 Identities=16% Similarity=0.144 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCCh---------------------hHHHH-HHHHHHHHHHhhCHHHH
Q 001255 980 PKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDE---------------------KTLVT-CINCLTKLVGRLSQEEL 1037 (1113)
Q Consensus 980 ~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~---------------------~~~~~-al~~L~~lie~~~~~~l 1037 (1113)
..++..+..|++.++..++|-.|+-.+++.|..-.. ..+.. -+++|..+..++++.--
T Consensus 80 ~~~~~~~~~~l~~la~~gnPkE~~l~~~E~l~~l~~ed~~~~~~~~~~~~~~~~~~~~~kf~~Ll~~l~~~l~ri~t~~p 159 (633)
T PF08568_consen 80 SPCVDCCMKCLEELARLGNPKELLLKVCELLEELSPEDEDDEEDDESIERNQIEEPFDLKFYCLLELLQIVLKRIQTKYP 159 (633)
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhcccch
Confidence 689999999999999999999988888888763211 11111 25777788877775333
Q ss_pred HhhhhhHHHHHHHHhcC
Q 001255 1038 MAQLPSFLPALFEAFGN 1054 (1113)
Q Consensus 1038 ~~~L~~lip~l~~~l~D 1054 (1113)
..-|...++.+...+..
T Consensus 160 s~Fl~~~l~~i~~~~~~ 176 (633)
T PF08568_consen 160 SRFLAMALSAILNFLKN 176 (633)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 22345555555555554
No 234
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=68.01 E-value=2e+02 Score=31.96 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=51.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhcc--CChhHHHHHHHHHHHHHHhhCHHHHHhhhhhH
Q 001255 967 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT--EDEKTLVTCINCLTKLVGRLSQEELMAQLPSF 1044 (1113)
Q Consensus 967 ~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s--~~~~~~~~al~~L~~lie~~~~~~l~~~L~~l 1044 (1113)
.+..|++.++|..+-.|..+.-++.++-.- ..++.|...|.. ...=.|.+|.+-|+.+.. .++
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~----~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-----------e~~ 252 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSP----AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-----------EDC 252 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccch----hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----------HHH
Confidence 355555666655555666655555544322 234444444432 223356667766665441 334
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH
Q 001255 1045 LPALFEAFGNQSADVRKTVVFCLVD 1069 (1113)
Q Consensus 1045 ip~l~~~l~D~~seVRkaAv~clv~ 1069 (1113)
++.|.+..+|.++-||+.+..++-.
T Consensus 253 ~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 253 VEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5678888899999999988887743
No 235
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.82 E-value=1.2e+02 Score=34.87 Aligned_cols=146 Identities=14% Similarity=0.193 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh---
Q 001255 924 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--- 1000 (1113)
Q Consensus 924 ~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~--- 1000 (1113)
-.+.+.|...+.|.+..+.-+|-..|+.|+....+..+-.-..-||.+++.++++.-...-+--.|++.|.-+-..+
T Consensus 250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLI 329 (550)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccce
Confidence 34677888889888888887787788888765554443333346788888889887777777778887766431111
Q ss_pred ---hHHHHhhhhhccCCh-hHHHHHHHHHHHHHHhh--CHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1001 ---RCLSVIVPLLVTEDE-KTLVTCINCLTKLVGRL--SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1001 ---~~l~~l~~~l~s~~~-~~~~~al~~L~~lie~~--~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
-+++-|..++..++. .+...|...|..|.... ...++. =.-.+|-+..-+-|.--+||..--.|+..+-
T Consensus 330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~--esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIR--ESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHh--hcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 145555666654443 35666777777776433 223332 1345677888888999999998888876553
No 236
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=67.34 E-value=2.4e+02 Score=34.07 Aligned_cols=174 Identities=13% Similarity=0.140 Sum_probs=95.0
Q ss_pred HHHHHHhcCCchhhHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhc----hhhhhhHHHHHHHHHHHHhCCChH
Q 001255 906 QLIKASVANDHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQ----KDVMEDSVEIVIEKLLHVTKDAVP 980 (1113)
Q Consensus 906 ~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D-~n~~vr~~aL~~L~~L~~~~----~~~~~~~~~~~l~~ll~~~~Ds~~ 980 (1113)
.+..++++.-..........|...+....++ +|+.--.-..+.|..+.+.. +..+..+-..++|.+...+.....
T Consensus 52 Rvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~ 131 (435)
T PF03378_consen 52 RVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQ 131 (435)
T ss_dssp HHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334443333233344444444444444 46665555566666665543 233446666777777777776556
Q ss_pred HHHHHHHHHHHHHHhhcC---hh----hHHHHh-hhhh-c-cCChhHHHHHHHHHHHHHHhhCHHHHH-hhhhhHHHHHH
Q 001255 981 KVSNEAEHCLTVVLSQYD---PF----RCLSVI-VPLL-V-TEDEKTLVTCINCLTKLVGRLSQEELM-AQLPSFLPALF 1049 (1113)
Q Consensus 981 ~Vr~aa~~~l~~l~~~~~---p~----~~l~~l-~~~l-~-s~~~~~~~~al~~L~~lie~~~~~~l~-~~L~~lip~l~ 1049 (1113)
+..--+-+.+-.+++..+ .. .+++.| .|.+ + .++.|. .+.+|...+++.+...+. .++..++-..-
T Consensus 132 EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPa---lvrLL~a~i~k~~~~i~~~~~l~~iLgvFQ 208 (435)
T PF03378_consen 132 EFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPA---LVRLLQAYIKKDPSFIVANNQLEPILGVFQ 208 (435)
T ss_dssp TTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHH---HHHHHHHHHHHHGGG----S-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCc---HHHHHHHHHHhCchhhcchhhHHHHHHHHH
Confidence 666666777777777665 11 233332 2222 1 222232 246778888777765542 46666766667
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhh-hhhHhhhhc
Q 001255 1050 EAFGNQSADVRKTVVFCLVDIYIMLG-KAFLPYLER 1084 (1113)
Q Consensus 1050 ~~l~D~~seVRkaAv~clv~i~~~lG-e~i~p~l~~ 1084 (1113)
+++..+..| ..+.+.|-.+..+++ +.+.||++.
T Consensus 209 kLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~ 242 (435)
T PF03378_consen 209 KLIASKAND--HYGFDLLESIVENLPPEALEPYLKQ 242 (435)
T ss_dssp HHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHH
T ss_pred HHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 777877766 568899999999998 478888764
No 237
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=66.98 E-value=2.8e+02 Score=33.26 Aligned_cols=147 Identities=11% Similarity=0.146 Sum_probs=82.8
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
....+..|...+ |-....|+.-|..++..+...........++.+|...+... +......|+.+|+.|++.-..+.
T Consensus 103 ~~~fl~lL~~~d---~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~ 179 (429)
T cd00256 103 WEPFFNLLNRQD---QFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRF 179 (429)
T ss_pred hHHHHHHHcCCc---hhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHH
Confidence 344555444333 45667777777777765543222222223445666666543 34466667899999998765542
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh--------hHHHHhhhhhc-cCChhHHHHHHHHHHHHHHh
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGR 1031 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~--------~~l~~l~~~l~-s~~~~~~~~al~~L~~lie~ 1031 (1113)
.=+-...++.|++.+....-.+.-.=+.++-.|+-.+.+. .+++.+..+++ +.+.++.+.|+-.+..+++.
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 1111113444444443322234445555666676655543 47777777775 34667777778778787764
No 238
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=66.88 E-value=25 Score=34.37 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=49.4
Q ss_pred HhHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHH--HHh--C-----CChHHHHHHHHH
Q 001255 921 KYFNQILTAVLEVL---DDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLL--HVT--K-----DAVPKVSNEAEH 988 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L---~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll--~~~--~-----Ds~~~Vr~aa~~ 988 (1113)
..+..|+..|.++| ..++..+.-.||.+|..|+.+-...|-..+..-+..|- ..+ . |....||+.|.+
T Consensus 35 ~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~ 114 (125)
T PF01417_consen 35 KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKE 114 (125)
T ss_dssp HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHH
Confidence 35888899999999 44567788899999999999887776655543222222 111 1 233458888888
Q ss_pred HHHHH
Q 001255 989 CLTVV 993 (1113)
Q Consensus 989 ~l~~l 993 (1113)
++..+
T Consensus 115 i~~lL 119 (125)
T PF01417_consen 115 ILELL 119 (125)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88765
No 239
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=66.78 E-value=65 Score=32.97 Aligned_cols=130 Identities=18% Similarity=0.236 Sum_probs=71.5
Q ss_pred CCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHh-CCChHHHHHHHHHHHH----HHHhhcChhhHHHHhhhhhc
Q 001255 937 ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT-KDAVPKVSNEAEHCLT----VVLSQYDPFRCLSVIVPLLV 1011 (1113)
Q Consensus 937 ~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~-~Ds~~~Vr~aa~~~l~----~l~~~~~p~~~l~~l~~~l~ 1011 (1113)
....+|..++-++..+....+..|...+..++..++..- -|+.-.+..++..++. .....+.-+.+++.+.+.+.
T Consensus 17 ~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~ 96 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLAS 96 (157)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHh
Confidence 456689889888888877666667766666666665322 3432222333332221 11122333467788888777
Q ss_pred --cCChhHHHHHHHHHHHHHHhhCHHHHHh-hhhhHHHHHHHHhcCCCHH--HHHHHHHHHHH
Q 001255 1012 --TEDEKTLVTCINCLTKLVGRLSQEELMA-QLPSFLPALFEAFGNQSAD--VRKTVVFCLVD 1069 (1113)
Q Consensus 1012 --s~~~~~~~~al~~L~~lie~~~~~~l~~-~L~~lip~l~~~l~D~~se--VRkaAv~clv~ 1069 (1113)
+++...-..+++++. .....+.+.. .....++.|.+.+.+.+.+ ||-.|.-+|+.
T Consensus 97 ~~~~~~~~~~~~lell~---aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 97 RKSKDRKVQKAALELLS---AACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp -CTS-HHHHHHHHHHHH---HHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH---HHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 444444445555443 3344344432 3455667788888654433 57666655543
No 240
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=66.36 E-value=36 Score=38.42 Aligned_cols=104 Identities=11% Similarity=0.183 Sum_probs=68.3
Q ss_pred ChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhc----cCChhHHHHHHHHHHHHHHhhCHHHHHhh----hhhHHHHHH
Q 001255 978 AVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV----TEDEKTLVTCINCLTKLVGRLSQEELMAQ----LPSFLPALF 1049 (1113)
Q Consensus 978 s~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~----s~~~~~~~~al~~L~~lie~~~~~~l~~~----L~~lip~l~ 1049 (1113)
++.+--.-...|+..+.+.--+..+.+-++|.++ ..+.-.+..+++-++.++|...++.+... -..++|.+.
T Consensus 55 nhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklil 134 (524)
T KOG4413|consen 55 NHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLIL 134 (524)
T ss_pred cccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHH
Confidence 3333333456666666655444445555555554 34444566668888999999987665443 257889999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhh
Q 001255 1050 EAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYL 1082 (1113)
Q Consensus 1050 ~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l 1082 (1113)
.|+...+-+|-|+|...+-.+- .+.+.+.-.+
T Consensus 135 dcIggeddeVAkAAiesikria-lfpaaleaiF 166 (524)
T KOG4413|consen 135 DCIGGEDDEVAKAAIESIKRIA-LFPAALEAIF 166 (524)
T ss_pred HHHcCCcHHHHHHHHHHHHHHH-hcHHHHHHhc
Confidence 9999999999999999886553 3344444333
No 241
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=66.25 E-value=39 Score=32.30 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhHhhhhc
Q 001255 1015 EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLER 1084 (1113)
Q Consensus 1015 ~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe-~i~p~l~~ 1084 (1113)
+..+..++.-++.+++-.+ ..+...+|.++-.|..+++ .+|.|..|..|.-.+...+.+ ++.|.+..
T Consensus 29 ~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~ 96 (107)
T smart00802 29 YNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQ 96 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456777888889997544 5666778888888888887 556999999999999999995 78887764
No 242
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=65.77 E-value=1.7e+02 Score=35.50 Aligned_cols=163 Identities=13% Similarity=0.171 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh--chh-hhhhHHHHHHHHHHHHhCCC
Q 001255 903 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKN--QKD-VMEDSVEIVIEKLLHVTKDA 978 (1113)
Q Consensus 903 AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~--~~~-~~~~~~~~~l~~ll~~~~Ds 978 (1113)
.|+=+.++++-+....-+.....++..++.....+ +....+.+|.+|..+..- .+. .+.+++ .+|..+....
T Consensus 154 ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i-~vLCsi~~~~--- 229 (464)
T PF11864_consen 154 LLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCI-EVLCSIVNSV--- 229 (464)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHH-HHHhhHhccc---
Confidence 34445556665544333456777777777765443 555667899999999872 232 232332 2333332221
Q ss_pred hHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhc--c----CChhHHHHHHHHHHHHHHhhCHHHH---HhhhhhHHHHHH
Q 001255 979 VPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV--T----EDEKTLVTCINCLTKLVGRLSQEEL---MAQLPSFLPALF 1049 (1113)
Q Consensus 979 ~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~--s----~~~~~~~~al~~L~~lie~~~~~~l---~~~L~~lip~l~ 1049 (1113)
...+.+-.+++.++..-.-..++..|+.+|. + .+....++|+.+++.++-..+.+.+ .-.+..++|.+.
T Consensus 230 --~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~ 307 (464)
T PF11864_consen 230 --SLCKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLL 307 (464)
T ss_pred --ccchhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHH
Confidence 6677788899988876555678888899983 2 2445677999999998855544433 222345889999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHH
Q 001255 1050 EAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1050 ~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
.++.-.++-|=-....++-.+.
T Consensus 308 ~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 308 NALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHhCCCCeehHHHHHHHHHHH
Confidence 9999777655444444443333
No 243
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=64.81 E-value=1.8e+02 Score=30.32 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=63.1
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhChHHHHHH
Q 001255 103 PRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRL 182 (1113)
Q Consensus 103 ~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~~~~p~~a~~l 182 (1113)
+.+..-+ .+.+.=+|+.+...+...+.+ +...+.+.+++...+.|.+.-||.+.--++..+.+.+|+.+..+
T Consensus 108 ~~~~~w~-~s~~~~~rR~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWA-KSENEWVRRAAIVLLLRLIKK-------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHH-hCCcHHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 5566555 789999999998887666555 23467788888899999999999999999999999999999998
Q ss_pred HhcCC
Q 001255 183 FSSFD 187 (1113)
Q Consensus 183 l~~Ld 187 (1113)
+....
T Consensus 180 l~~~~ 184 (197)
T cd06561 180 LEKNG 184 (197)
T ss_pred HHHHH
Confidence 87543
No 244
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=64.05 E-value=2.6e+02 Score=33.44 Aligned_cols=182 Identities=12% Similarity=0.166 Sum_probs=107.1
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcC-CchhhHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN-DHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~-~~~~~~~~f~~ll~~Ll~~L~D-~n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
+..|+..+...+ ..||.-...-|..+.... +... --...+-..|...+.+ ..+......|.++..+.+....+
T Consensus 135 i~~Ll~l~~S~D---~rER~~lk~~l~~iy~k~~~~r~--~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~p 209 (409)
T PF01603_consen 135 IKKLLELFDSPD---PRERDYLKTILHRIYGKFPNLRS--FIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVP 209 (409)
T ss_dssp HHHHHHTTTSST---HHHHHHHHHHHHHHHHH-TTTHH--HHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS
T ss_pred HHHHHHHcCCCC---HHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCC
Confidence 355555554332 457766555555554332 2211 1133334445555543 34555555799999999976544
Q ss_pred hhhH-HHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHhhcChhh---HHHHhhhhhccCChhHHHHHHHHHHHHHHhhCH
Q 001255 960 MEDS-VEIVIEKLLHVTKDAV-PKVSNEAEHCLTVVLSQYDPFR---CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ 1034 (1113)
Q Consensus 960 ~~~~-~~~~l~~ll~~~~Ds~-~~Vr~aa~~~l~~l~~~~~p~~---~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~ 1034 (1113)
+.+. ...+.-.|+-.++.+. .........|+..++.. .|.- ++..|.-..-..+.+.-+.-|+.+..+++..++
T Consensus 210 lk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k-dp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~ 288 (409)
T PF01603_consen 210 LKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK-DPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPP 288 (409)
T ss_dssp --HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--H
T ss_pred CcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-CchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCH
Confidence 5432 2223333334455443 44578888888888876 4443 344443333334444455667899999999998
Q ss_pred HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001255 1035 EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVD 1069 (1113)
Q Consensus 1035 ~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~ 1069 (1113)
++.......+..-+.+|+...+-.|-..|.+.+-.
T Consensus 289 ~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 289 EEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 88888899999999999999999999999876643
No 245
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.03 E-value=2.9e+02 Score=35.67 Aligned_cols=114 Identities=11% Similarity=0.120 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh------hHHHHhhhhhc
Q 001255 938 DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLV 1011 (1113)
Q Consensus 938 n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~------~~l~~l~~~l~ 1011 (1113)
|++....+..+++.++..++..- .|+-..||.|++.+..++ ....+...++.+++-|+.+ .++.++-..+.
T Consensus 522 n~ql~~Tss~~igs~s~~l~e~P-~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~ 598 (982)
T KOG2022|consen 522 NPQLLSTSSDLIGSLSNWLGEHP-MYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLN 598 (982)
T ss_pred ChhHHHHHHHHHHHHHHHHhcCC-cccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhc
Confidence 88888889999999988665321 356677888899898774 4445556689998876542 24444444444
Q ss_pred cCCh--hHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcC
Q 001255 1012 TEDE--KTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 1054 (1113)
Q Consensus 1012 s~~~--~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D 1054 (1113)
..+. -.+...++.++.++.+.-+++....|..++-.+...++.
T Consensus 599 ~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~ 643 (982)
T KOG2022|consen 599 KSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEI 643 (982)
T ss_pred ccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHH
Confidence 3333 234455788899998888777766666666555555543
No 246
>PF05536 Neurochondrin: Neurochondrin
Probab=63.31 E-value=1.6e+02 Score=36.70 Aligned_cols=154 Identities=12% Similarity=0.091 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhchhhhhhHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh
Q 001255 922 YFNQILTAVLEVLDDADS-SVREVALSLINEMLKNQKDVMEDSV-EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP 999 (1113)
Q Consensus 922 ~f~~ll~~Ll~~L~D~n~-~vr~~aL~~L~~L~~~~~~~~~~~~-~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p 999 (1113)
.|-.-++.|++.+..... .+..-|+.+|..|+ ..+...+.++ ...++.|.+.+.+ +....+.|...+-.++.....
T Consensus 95 ~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~ 172 (543)
T PF05536_consen 95 QMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQ 172 (543)
T ss_pred HHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcch
Confidence 455556677777765544 67778899999998 3333333332 2466677776666 455666666666665555442
Q ss_pred h----------hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHH-----HHHhhhhhHHHHHHHHhcC-CCHHHHHHH
Q 001255 1000 F----------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQE-----ELMAQLPSFLPALFEAFGN-QSADVRKTV 1063 (1113)
Q Consensus 1000 ~----------~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~-----~l~~~L~~lip~l~~~l~D-~~seVRkaA 1063 (1113)
. .+++.|...+.......+...+++|..++.+.+.. .-...+..+..+|..-+.. -.++-|..|
T Consensus 173 ~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~a 252 (543)
T PF05536_consen 173 KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPA 252 (543)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 1 34455555555444555667788888888766421 1123567777777777775 567889999
Q ss_pred HHHHHHHHHHhhhh
Q 001255 1064 VFCLVDIYIMLGKA 1077 (1113)
Q Consensus 1064 v~clv~i~~~lGe~ 1077 (1113)
..+...+..++|.+
T Consensus 253 l~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 253 LNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHHHhChH
Confidence 99999999999953
No 247
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=63.18 E-value=14 Score=28.35 Aligned_cols=29 Identities=14% Similarity=0.339 Sum_probs=25.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1043 SFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1043 ~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
..+|.|++.+.+.+.+|++.|..+|..+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36799999999999999999999988764
No 248
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=62.85 E-value=1.1e+02 Score=31.41 Aligned_cols=119 Identities=11% Similarity=0.238 Sum_probs=81.9
Q ss_pred ChHHHHHHhhcCCC---CChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHh
Q 001255 881 SIPQILHLMCNGND---GSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD--ADSSVREVALSLINEMLKN 955 (1113)
Q Consensus 881 ~i~~lL~~l~~~~~---~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D--~n~~vr~~aL~~L~~L~~~ 955 (1113)
.+.-|++.+++..+ ...+.-.-+|..+.++.. ++...|+.-....+.-+.....- .+.++.+.||.+|..++.+
T Consensus 12 Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMe-Hg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~ 90 (160)
T PF11841_consen 12 GLTLLIKMIEEGTEIQPCKGEILAYALTAFVELME-HGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLN 90 (160)
T ss_pred CHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHh-cCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhC
Confidence 35667777777653 111333446777777555 45667865555555555555533 2677899999999999986
Q ss_pred chhhhhh-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh
Q 001255 956 QKDVMED-SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF 1000 (1113)
Q Consensus 956 ~~~~~~~-~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~ 1000 (1113)
-...+.. .-+..++.|+..+.++..++...+...++++....+..
T Consensus 91 S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 91 SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 5543322 23668888888888899999999999999998777664
No 249
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=62.11 E-value=92 Score=36.02 Aligned_cols=103 Identities=13% Similarity=0.118 Sum_probs=63.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCH---HHHHhhhhh
Q 001255 967 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ---EELMAQLPS 1043 (1113)
Q Consensus 967 ~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~---~~l~~~L~~ 1043 (1113)
+|-.++..+... ..++..+..+++.|+... ++.|...+.+.+......|+++|+.++.-.+. .++-....-
T Consensus 28 ~L~~~l~~ls~~-~~~~~~g~~l~~~iL~~~-----~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~ 101 (330)
T PF11707_consen 28 VLALLLKKLSSD-LSFQSYGLELIRSILQNH-----LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDF 101 (330)
T ss_pred HHHHHHHHhccc-hhHHHHHHHHHHHHHHHH-----HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCC
Confidence 444444444433 237777778888888764 66777788777777777999999999973332 222222222
Q ss_pred HHHHHHHHhcCCC-------------HHHHHHHHHHHHHHHHHhh
Q 001255 1044 FLPALFEAFGNQS-------------ADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1044 lip~l~~~l~D~~-------------seVRkaAv~clv~i~~~lG 1075 (1113)
-.+.+.+.+..+. ++||.+.+..+..+.....
T Consensus 102 ~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~ 146 (330)
T PF11707_consen 102 SLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGD 146 (330)
T ss_pred chhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCC
Confidence 2233333322111 3899999999988887654
No 250
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=61.61 E-value=2.7e+02 Score=32.32 Aligned_cols=179 Identities=12% Similarity=0.126 Sum_probs=107.2
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcC--Cch-----hhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN--DHS-----IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLK 954 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~--~~~-----~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~ 954 (1113)
+..|+..|..-+ ++.|+++..-...+++.. +.. ++..+-.+++..|+...++.+. .-.+=.+|++.++
T Consensus 78 l~~Li~~L~~L~---fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~di--al~~g~mlRec~k 152 (335)
T PF08569_consen 78 LYLLIRNLPKLD---FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDI--ALNCGDMLRECIK 152 (335)
T ss_dssp HHHHHHTGGGS----HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTT--HHHHHHHHHHHTT
T ss_pred HHHHHHHhhhCC---CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccc--cchHHHHHHHHHh
Confidence 566677666655 689999998888888664 211 1222226777788877765543 2223334444333
Q ss_pred hchhhhhhHH--HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhc----------ChhhHHHHhhhhhccCChhHHHHHH
Q 001255 955 NQKDVMEDSV--EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY----------DPFRCLSVIVPLLVTEDEKTLVTCI 1022 (1113)
Q Consensus 955 ~~~~~~~~~~--~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~----------~p~~~l~~l~~~l~s~~~~~~~~al 1022 (1113)
... +..++ ...+-.+++-...+.=+|...|-..++.+...- +.++++......|.+.+|-+++-++
T Consensus 153 ~e~--l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 153 HES--LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp SHH--HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred hHH--HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 211 11110 112334566677777888888888888766541 3456777778888899999999999
Q ss_pred HHHHHHHH-hhCHHHHHhhh--hhHHHHHHHHhcCCCHHHHHHHHHHH
Q 001255 1023 NCLTKLVG-RLSQEELMAQL--PSFLPALFEAFGNQSADVRKTVVFCL 1067 (1113)
Q Consensus 1023 ~~L~~lie-~~~~~~l~~~L--~~lip~l~~~l~D~~seVRkaAv~cl 1067 (1113)
++|+.++. +.....+...+ +.-+..+.-.+.|...-|+=.|...+
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvF 278 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVF 278 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 99998873 33334433322 33445666777899988998886543
No 251
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.02 E-value=37 Score=43.59 Aligned_cols=110 Identities=9% Similarity=0.022 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHhhhCCCc---ccHHHHHHHhhhcCCHHHH
Q 001255 42 KQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAV---RVLPRIADCAKNDRNAVLR 118 (1113)
Q Consensus 42 ~~Ac~~l~~La~~L~~~f~~~a~~~lp~Ll~~~~~t~kvi~~sa~~ai~~ii~~~~~~---r~l~~i~~~~~~~K~~~vR 118 (1113)
+-+..-|+.+|..+|..|.+..-..+=+++.+++.....|++.|..|+..|+..|.+. .+|..=.+.+.++=+...+
T Consensus 566 Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~ 645 (1014)
T KOG4524|consen 566 CIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLN 645 (1014)
T ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhc
Confidence 3445567889999999999866555556777777778899999999999999999873 4444433433221111111
Q ss_pred -----HHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHh
Q 001255 119 -----ARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCV 153 (1113)
Q Consensus 119 -----~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l 153 (1113)
-++-..|..+++.-.. ..-.+++.+.+.|.+.+
T Consensus 646 ~~~~s~~~~~Vl~vVl~~s~~--~~i~~l~dvvq~i~~~l 683 (1014)
T KOG4524|consen 646 TSGMSPRVPDVLMVVLQYSDY--GTIPNLKDVVQTIFKLL 683 (1014)
T ss_pred cCCCCchhHHHHHHHhhcCCC--CchhhHHHHHHHHHHHH
Confidence 1334444555544432 23345555555554443
No 252
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=60.89 E-value=58 Score=41.42 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHH-HHHHHHHHHhC-CChHHHHHHHHHHHHHHHhhcCh
Q 001255 924 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVE-IVIEKLLHVTK-DAVPKVSNEAEHCLTVVLSQYDP 999 (1113)
Q Consensus 924 ~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~-~~l~~ll~~~~-Ds~~~Vr~aa~~~l~~l~~~~~p 999 (1113)
+.++..|-+.+. ++.-|..+|.+|..+++.++..+..-+. .++..||.++. |....|...|..||-.++-+++.
T Consensus 69 K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 69 KHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred HHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 444455555554 3557888999999999998876655554 68889998886 88889999999999998887763
No 253
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=60.74 E-value=2.4e+02 Score=31.48 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=84.2
Q ss_pred hHHHHHHhhcCCCCC-hhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhh
Q 001255 882 IPQILHLMCNGNDGS-PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~-~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
++-+++.+++.+-.. ..+..+..+.|..+....+. +++..++..+.+.-.....+-..+++.+|. ..|
T Consensus 113 LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~----~~La~il~~ya~~~fr~~~dfl~~v~~~l~-------~~f 181 (262)
T PF14225_consen 113 LPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGL----PNLARILSSYAKGRFRDKDDFLSQVVSYLR-------EAF 181 (262)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCC----ccHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------HHh
Confidence 477788887766100 13455666677666655444 356777777654333222222222333333 233
Q ss_pred -hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-----hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhC
Q 001255 961 -EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-----RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLS 1033 (1113)
Q Consensus 961 -~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-----~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~ 1033 (1113)
-+|.-.++.-+++.+.+.-..++.....+++.+..+.+.. +++..|...+++.-|. +|++.|..++...|
T Consensus 182 ~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~---eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 182 FPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWM---EALEVLDEIVTRSG 257 (262)
T ss_pred CchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHH---HHHHHHHHHHhhcc
Confidence 3444445555667777788899999999999999887654 3666667777776664 56777777775544
No 254
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=59.35 E-value=1.5e+02 Score=38.34 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh--
Q 001255 923 FNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-- 1000 (1113)
Q Consensus 923 f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-- 1000 (1113)
.+.-.+.+..+|.|+...||.+++++|..|++. .|-.|--.++-.++-.+-|.++.||.-|+=|+..++..-.|.
T Consensus 1004 ~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~---~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f 1080 (1529)
T KOG0413|consen 1004 TDRYIPMIAASLCDPSVIVRRQTIILLARLLQF---GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFF 1080 (1529)
T ss_pred HHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhh---hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccch
Confidence 344566788999999999999999999999973 344443334445555566888999999999999988775543
Q ss_pred --hHHHHhhhhhc-----------------------cCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCC
Q 001255 1001 --RCLSVIVPLLV-----------------------TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ 1055 (1113)
Q Consensus 1001 --~~l~~l~~~l~-----------------------s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~ 1055 (1113)
.++.++..+-+ .++.+.+-.-+++-+.|++++..+..-..-..|+..|..++.|-
T Consensus 1081 ~~~FVe~i~~ln~~~~h~g~~n~~qs~r~~~~fSi~G~d~~aR~~Rm~IY~fLL~~~~de~rf~v~~kiC~~Ila~~~dG 1160 (1529)
T KOG0413|consen 1081 PLNFVEYIIALNQARRHVGVGNHDQSDRGQVDFSIGGGDPLARPSRMAIYTFLLDSLDDESRFDVKMKICQRILAPIVDG 1160 (1529)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcccchhceeEeecCCCcccchhhhhHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcC
Confidence 34444422211 01222231124455677778776655444455555566665554
Q ss_pred CHHH
Q 001255 1056 SADV 1059 (1113)
Q Consensus 1056 ~seV 1059 (1113)
.=+.
T Consensus 1161 ~l~~ 1164 (1529)
T KOG0413|consen 1161 ELDF 1164 (1529)
T ss_pred cCCh
Confidence 4434
No 255
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.20 E-value=93 Score=35.24 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChH
Q 001255 927 LTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVP 980 (1113)
Q Consensus 927 l~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~ 980 (1113)
+..|.+.+.+.++.||..|...+-.+.......|.+|-+..++.+.+...|+..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~ 58 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP 58 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc
Confidence 455788888999999999987777666654556888888899999999999866
No 256
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=59.02 E-value=91 Score=40.17 Aligned_cols=67 Identities=15% Similarity=0.057 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 001255 922 YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLT 991 (1113)
Q Consensus 922 ~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~ 991 (1113)
..|-+-..+..+.-|+...||..||..+..++.-+++.+ ...+|..+++...|.+-.++++++.++-
T Consensus 469 evg~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~---~~sIl~~~inS~~d~~fs~ves~~~~~~ 535 (1529)
T KOG0413|consen 469 EVGVLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHRE---AFSILCATINSEMDEKFSAVESLEDLNV 535 (1529)
T ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc---hHHHHHHhcCCccccchhHHHhchhhhh
Confidence 355566667777779999999999999999999777654 5567788888889998888887777653
No 257
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=58.76 E-value=70 Score=31.39 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=50.0
Q ss_pred HhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHH--HHHHh------C-CChHHHHHHHHHH
Q 001255 921 KYFNQILTAVLEVLDDA--DSSVREVALSLINEMLKNQKDVMEDSVEIVIEK--LLHVT------K-DAVPKVSNEAEHC 989 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L~D~--n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~--ll~~~------~-Ds~~~Vr~aa~~~ 989 (1113)
..|..|+..|.++|.|. +-...-.||.+|.+|+.+-...|-..+..-+.. -|.-+ | |....||+.|...
T Consensus 33 ~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i 112 (123)
T cd03571 33 VEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGKDQGINVREKAKEI 112 (123)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeCCCCCchhHHHHHHHHHH
Confidence 46889999999999887 444667899999999998776654443322211 11211 1 4557888888887
Q ss_pred HHHH
Q 001255 990 LTVV 993 (1113)
Q Consensus 990 l~~l 993 (1113)
+..+
T Consensus 113 ~~Ll 116 (123)
T cd03571 113 LELL 116 (123)
T ss_pred HHHh
Confidence 7754
No 258
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.92 E-value=48 Score=35.37 Aligned_cols=126 Identities=13% Similarity=0.160 Sum_probs=84.5
Q ss_pred CCChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc--
Q 001255 879 GPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ-- 956 (1113)
Q Consensus 879 ~~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~-- 956 (1113)
..+++-+..-|.+... .-|--|-+.+.++|..++. .+-+.+-+|+..|...|...|..|...+|++|+.|....
T Consensus 113 ~~yLp~F~dGL~e~~h---pyrf~A~~Gi~DLLl~~g~-kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~ 188 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDH---PYRFVARQGITDLLLAGGE-KILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGC 188 (262)
T ss_pred hHHHHHHhhhhhhcCC---CcchhhhhcHHHHHHhccc-ccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc
Confidence 3345555555555443 2455566667776665552 223567888888999998888999999999999988765
Q ss_pred -hhhhhhHHHHHHHHHHHHhC------------CChHHHHHHHHHHHHHHHhhcChhhH--HHHhhhh
Q 001255 957 -KDVMEDSVEIVIEKLLHVTK------------DAVPKVSNEAEHCLTVVLSQYDPFRC--LSVIVPL 1009 (1113)
Q Consensus 957 -~~~~~~~~~~~l~~ll~~~~------------Ds~~~Vr~aa~~~l~~l~~~~~p~~~--l~~l~~~ 1009 (1113)
|..+-+|...+||. ++.++ |....+-+-.++.|+.+...-+|..+ |+|+.|.
T Consensus 189 vG~aLVPfYRQlLp~-~n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GGpnAfINIKY~vPt 255 (262)
T KOG3961|consen 189 VGAALVPFYRQLLPV-LNTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGGPNAFINIKYMVPT 255 (262)
T ss_pred cchhhhhHHHHhhhh-hhhhcccccccccccCccccccHHHHHHHHHHHHHHcCCccceeeEeeccCc
Confidence 46688999888775 45554 34556667777888877777666653 3344443
No 259
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=57.63 E-value=36 Score=36.05 Aligned_cols=133 Identities=16% Similarity=0.142 Sum_probs=81.1
Q ss_pred CChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHh-hcCcchHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHH
Q 001255 498 SDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQH-LDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHV 576 (1113)
Q Consensus 498 ~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~-l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~~l 576 (1113)
+-=+.|.+|-..|+.++......+..+ ++...|.++|..- ...-|+.-....+..+..+ + .+..|.+.++.+|
T Consensus 19 KiDrvR~~A~~~l~~ll~~~~~~~~~i-p~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~L---L--~~~~y~~~ll~Gl 92 (193)
T PF12612_consen 19 KIDRVREVAGKCLQRLLHSQDPTIPHI-PHREELQDIFPSESEASLNWSSSSEYFPRLVKL---L--DLPEYRYSLLSGL 92 (193)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccCC-CcHHHHHHHcccccccccccCCHHHHHHHHHHH---h--ccHHHHHHHHhHH
Confidence 334689999999999995542211111 2444555544322 1112344444444444444 3 3458999999999
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHhh-----CCccchHHHHHHhhccC-CCHHHHHHHHHHHHHHHh
Q 001255 577 FSRLIDPKELVRQPCSTTLDIVSKT-----YSVDSLLPALLRSLDEQ-RSPKAKLAVIEFAISSLN 636 (1113)
Q Consensus 577 l~klgD~K~~vr~~a~~~L~~i~e~-----~~~~~~l~~l~~~~~~~-knpkvk~~~L~~l~~~l~ 636 (1113)
+--.|..-+++...+..+|..+... ...+.++..|...+.++ ++.++-+-+|+.+...|.
T Consensus 93 v~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~ 158 (193)
T PF12612_consen 93 VVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLS 158 (193)
T ss_pred HhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHh
Confidence 9999988888888888887777642 23455666666666544 456666666666655554
No 260
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=57.49 E-value=33 Score=32.42 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=48.9
Q ss_pred HHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh-hHhhhhcCChhhHhhHHHHHHhhhc
Q 001255 1034 QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKA-FLPYLERLNSTQLRLVTIYANRISQ 1102 (1113)
Q Consensus 1034 ~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~-i~p~l~~L~~s~~kLl~~yi~R~~~ 1102 (1113)
++.+.++.+.++..+..+|.|=.++||.-|...|--+..+.|++ +.. .--|+++-|+.=.+.
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~-------~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSG-------GWVKILPNFLDLLGW 64 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhh-------hHHHHHHHHHHHHCC
Confidence 56778899999999999999999999999999999888888876 322 333466666655443
No 261
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=56.98 E-value=1.2e+02 Score=35.77 Aligned_cols=123 Identities=14% Similarity=0.156 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhHH---HHHhHHHHHHHHhhhCC-----C-----------
Q 001255 38 SSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLV---IAESSDNCIKTMLRNCK-----A----------- 98 (1113)
Q Consensus 38 S~vv~~Ac~~l~~La~~L~~~f~~~a~~~lp~Ll~~~~~t~kv---i~~sa~~ai~~ii~~~~-----~----------- 98 (1113)
.+--+.||.+|..|++..+......+-.++..++......... --+.|-..+.+|..... .
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 4556789999999988877776666666777777643332111 11222222222222110 0
Q ss_pred ---cccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 001255 99 ---VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMC 167 (1113)
Q Consensus 99 ---~r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a 167 (1113)
.-|+|++. .- .++.|-+|..++.|+...=...+. ..+..+.+.+..+|.+.+.-|+.+|.-|
T Consensus 305 Ff~~~v~peL~-~~-~~~~piLka~aik~~~~Fr~~l~~-----~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 305 FFSQHVLPELQ-PD-VNSHPILKADAIKFLYTFRNQLPK-----EQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHTCHHHH--S-S-S-HHHHHHHHHHHHHHGGGS-H-----HHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHhHHHhc-cc-CCCCcchHHHHHHHHHHHHhhCCH-----HHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 12345554 22 378999999999998877655543 3566788899999999999999998765
No 262
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=56.79 E-value=2.7e+02 Score=33.01 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=111.2
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCc-h-hHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhh-Ccc-hH-----H
Q 001255 497 SSDWCARVSAFNYLRSLLQQGPKG-I-QEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSC-RKP-FE-----S 567 (1113)
Q Consensus 497 s~nWkeR~eal~~L~~~l~~~~~~-~-~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~-~~~-~~-----~ 567 (1113)
+..|..|-.+|..+...+-..+-. + .....++..-++.+.+-+.|--.-++|.-|+.|..|+..+ +++ |. .
T Consensus 404 cktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfskledah 483 (666)
T KOG4825|consen 404 CKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFSKLEDAH 483 (666)
T ss_pred hcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhHHH
Confidence 578999999999988877654421 1 1111345555556666788888889999999999887654 222 21 3
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH---hhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 001255 568 YMERILPHVFSRLIDPKELVRQPCSTTLDIVS---KTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEG 644 (1113)
Q Consensus 568 ~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~---e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~~ 644 (1113)
++..-++.++-.-||.-.-+|.-|.+..+.++ ++-....+-..|..|++..+.|-+-..-..-|...+...+....+
T Consensus 484 clehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarllkdlgkGrag 563 (666)
T KOG4825|consen 484 CLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLLKDLGKGRAG 563 (666)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHHHHhcCCCccc
Confidence 44555667777778888778888777766654 556666666777777776666633222222233333332222222
Q ss_pred CCChhhHHHHHHhHcccc--CCCCHHHHHHHHHHHHHHHhh
Q 001255 645 SGNLGILKLWLAKLTPLV--HDKNTKLKEAAITCIISVYTH 683 (1113)
Q Consensus 645 ~~~~~~~~~~l~~l~~~~--~d~n~~VR~aA~~~L~~l~~~ 683 (1113)
| +. .+.+.+..- ...--++|.+|...++.+|+.
T Consensus 564 f-----ie-diakkfgVpaeehglndkreaafaiicdmtrd 598 (666)
T KOG4825|consen 564 F-----IE-DIAKKFGVPAEEHGLNDKREAAFAIICDMTRD 598 (666)
T ss_pred h-----hH-HHHHHhCCCccccchhHHHHhHhhhhhhhccc
Confidence 2 11 222333332 225578999999999999863
No 263
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=56.62 E-value=63 Score=31.50 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhh---hhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Q 001255 924 NQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDV---MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS 995 (1113)
Q Consensus 924 ~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~~---~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~ 995 (1113)
..++..|.+.|..+ ++.+..-||.=|+++++..+.. ++.. ..=..|++.+.++.++|+..|..|+..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~l--g~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKL--GAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHH--SHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhc--ChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45577788888443 6667778999999999987532 2222 133445566778889999999999987653
No 264
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=56.56 E-value=1.2e+02 Score=37.29 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=72.8
Q ss_pred hhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh-h-HHHH--hhhhhcc-C-ChhHHHHHHHHHHHHHH
Q 001255 957 KDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-R-CLSV--IVPLLVT-E-DEKTLVTCINCLTKLVG 1030 (1113)
Q Consensus 957 ~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~-~-~l~~--l~~~l~s-~-~~~~~~~al~~L~~lie 1030 (1113)
...+++.+..+||.+|.+++.++..||..+.+.+..+-+.+... . -||+ |...++. . ..-.+.-++=++..=++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 46799999999999999999999999999999999888776542 1 1221 2222322 2 23345556667777778
Q ss_pred hhCHHHHHhhhhhHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHhh
Q 001255 1031 RLSQEELMAQLPSFLPALFEAFGNQS---ADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1031 ~~~~~~l~~~L~~lip~l~~~l~D~~---seVRkaAv~clv~i~~~lG 1075 (1113)
+++.++-...+ |.+.+++...- .++.-....++..+++.+.
T Consensus 94 Rl~~~e~~~ll----P~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~ 137 (501)
T PF13001_consen 94 RLDDEERRELL----PSLLKGISKKPKQHQDSFLRLARLFNILLKLLP 137 (501)
T ss_pred cCCHHHHHHHH----HHHHHhhccCchhhhHHHHHHHHHHHHHhhcCC
Confidence 88776654444 55666665321 2333333344444555543
No 265
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=55.92 E-value=47 Score=34.13 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=47.3
Q ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 001255 928 TAVLEVLDDADSS-VREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVL 994 (1113)
Q Consensus 928 ~~Ll~~L~D~n~~-vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~ 994 (1113)
..|...|.|..-. -...++..+-.|++.++.++-+|+..++|.+++.+.......++..-.-+..++
T Consensus 89 ~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 89 NALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3355566664322 444667778888888998899999999999999998766666666555444443
No 266
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=55.04 E-value=1.3e+02 Score=35.42 Aligned_cols=72 Identities=11% Similarity=0.255 Sum_probs=50.1
Q ss_pred hhhHHHHhhhhhccCChh-HHHHHHHHHHHHHHhhCH--HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 999 PFRCLSVIVPLLVTEDEK-TLVTCINCLTKLVGRLSQ--EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 999 p~~~l~~l~~~l~s~~~~-~~~~al~~L~~lie~~~~--~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
-..++++|..++++++.| ....|..=++..|..+|. ..+...=.. ..+...+++.|++||..|..|+-.++.
T Consensus 364 nyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggK--e~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 364 NYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGK--ERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred cHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchH--HHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 346899999999877654 344455557888988875 233322111 346788899999999999998766654
No 267
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.23 E-value=3.2e+02 Score=38.33 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=79.5
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhchhhhh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADS-SVREVALSLINEMLKNQKDVME 961 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~-~vr~~aL~~L~~L~~~~~~~~~ 961 (1113)
.-+++.+.+..+ .-.|.--...|.-+.+..+...-.+++..-+..|+....|++. .|++.+|.-+..++..-++.+-
T Consensus 918 q~~fdklas~~d--~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~ 995 (2067)
T KOG1822|consen 918 QNSFDKLASARD--PITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFR 995 (2067)
T ss_pred HHHHHHHHhcCC--cHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceeh
Confidence 344555555543 2445554445555556655544456677767778888889876 8999999999999998888888
Q ss_pred hHHHHHHHHHHHHh---CCChHHHHHHHHHHHH------HHHhhcChh
Q 001255 962 DSVEIVIEKLLHVT---KDAVPKVSNEAEHCLT------VVLSQYDPF 1000 (1113)
Q Consensus 962 ~~~~~~l~~ll~~~---~Ds~~~Vr~aa~~~l~------~l~~~~~p~ 1000 (1113)
.|++..+.-++..+ .+...+|+.+-..|++ .+....+|+
T Consensus 996 ~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpe 1043 (2067)
T KOG1822|consen 996 VLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPE 1043 (2067)
T ss_pred hhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccc
Confidence 88888777666655 3566777777777777 666655543
No 268
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.83 E-value=5.2e+02 Score=31.77 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc--------hhhhhhHHHHHHHHHHHHhC------------CChHH
Q 001255 922 YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ--------KDVMEDSVEIVIEKLLHVTK------------DAVPK 981 (1113)
Q Consensus 922 ~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~--------~~~~~~~~~~~l~~ll~~~~------------Ds~~~ 981 (1113)
.|-.++..|+...+.....|.+.++...-.+-+.. -..|.+|+..++..+..-+. +....
T Consensus 288 ~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~ 367 (559)
T KOG2081|consen 288 EFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFE 367 (559)
T ss_pred cchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHH
Confidence 46666667777777777778888877754443321 12478888888888886554 34577
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHhhhhhcc--CChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhc--CCCH
Q 001255 982 VSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT--EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG--NQSA 1057 (1113)
Q Consensus 982 Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s--~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~--D~~s 1057 (1113)
.|..+-+.++-++..++-..|++.+...+.. ..|..--+++..|..++....+++ .++||.+.+.+. +..+
T Consensus 368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e-----~~i~pevl~~i~nlp~Q~ 442 (559)
T KOG2081|consen 368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEE-----NTIMPEVLKLICNLPEQA 442 (559)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccc-----cchHHHHHHHHhCCccch
Confidence 8888889998888889999999988877764 467777788899999888777544 334455555444 3444
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001255 1058 DVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1058 eVRkaAv~clv~i~~~lG 1075 (1113)
-+|-.++-.+..+...+.
T Consensus 443 ~~~~ts~ll~g~~~ew~~ 460 (559)
T KOG2081|consen 443 PLRYTSILLLGEYSEWVE 460 (559)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 599999988887776665
No 269
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.23 E-value=2.2e+02 Score=32.45 Aligned_cols=174 Identities=17% Similarity=0.194 Sum_probs=84.8
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcch-
Q 001255 487 SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF- 565 (1113)
Q Consensus 487 ~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~- 565 (1113)
.|+.. ++.+.+=-.|+.|++.|..+.-.+...+ ...-.++++.++++++|+-. ++.+..+|..+.+.. .+
T Consensus 6 ~elv~--ll~~~sP~v~~~AV~~l~~lt~~~~~~~---~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~--~l~ 76 (353)
T KOG2973|consen 6 VELVE--LLHSLSPPVRKAAVEHLLGLTGRGLQSL---SKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE--ELR 76 (353)
T ss_pred HHHHH--HhccCChHHHHHHHHHHhhccccchhhh---ccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH--HHH
Confidence 45555 6677777889999988887765522111 12234567777777777665 455555555555443 11
Q ss_pred HHHHHHHHHHHHHHhcCCchh--------------hHHHHHHHHHHHHhhCCccchHHHHHHhhccC-CCHHHHHHHHHH
Q 001255 566 ESYMERILPHVFSRLIDPKEL--------------VRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ-RSPKAKLAVIEF 630 (1113)
Q Consensus 566 ~~~l~~ll~~ll~klgD~K~~--------------vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~-knpkvk~~~L~~ 630 (1113)
+.-+..++..++.++.|.--. ..+.+..+|+..-+ +-+..+..++++..+. .|.++. ++|
T Consensus 77 ~~ll~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~--~~~~~lm~l~~~~~d~~~n~~a~---f~y 151 (353)
T KOG2973|consen 77 KKLLQDLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTE--KKDSGLMRLARAFCDKSYNAYAE---FHY 151 (353)
T ss_pred HHHHHHHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhccc--ccccchHHHHHHHhCcccccccc---hhH
Confidence 222222333333333322111 12223333333332 2334445555555544 575555 566
Q ss_pred HHHHHh---hhccCCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHH
Q 001255 631 AISSLN---KHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCI 677 (1113)
Q Consensus 631 l~~~l~---~~~~~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L 677 (1113)
++..+. .|.-...-|.. .-+..+.++.++.. ....||+.+....
T Consensus 152 lA~vf~nls~~~~gR~l~~~--~k~~p~~kll~ft~-~~s~vRr~Gvagt 198 (353)
T KOG2973|consen 152 LAPVFANLSQFEAGRKLLLE--PKRFPDQKLLPFTS-EDSQVRRGGVAGT 198 (353)
T ss_pred HHHHHHHHhhhhhhhhHhcc--hhhhhHhhhhcccc-cchhhhccchHHH
Confidence 655444 22110001111 11334556677777 6677888665433
No 270
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=51.05 E-value=1.4e+02 Score=31.87 Aligned_cols=98 Identities=11% Similarity=0.064 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHhhhCCCcccHHHHHHHhh-hcCCHH
Q 001255 38 SSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAK-NDRNAV 116 (1113)
Q Consensus 38 S~vv~~Ac~~l~~La~~L~~~f~~~a~~~lp~Ll~~~~~t~kvi~~sa~~ai~~ii~~~~~~r~l~~i~~~~~-~~K~~~ 116 (1113)
.....+...+++.|+..||....++...++-.|-++-.+..--..+.++.||-+.|+..+...++..+--.+. .++..
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~- 92 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQ- 92 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCC-
Confidence 4567889999999999999999999999999888888877767788899999999999988766665553332 12332
Q ss_pred HHHHHHHHHHHHHhhCCCchhhh
Q 001255 117 LRARCCEYALLVLEHWPDAPEIQ 139 (1113)
Q Consensus 117 vR~~~a~~L~~~l~~~~~~~~~~ 139 (1113)
..=.||.=+|+.+-.+..+.
T Consensus 93 ---~~raWLLPlLr~~i~~~~L~ 112 (198)
T PF08161_consen 93 ---PGRAWLLPLLRDHIRNASLS 112 (198)
T ss_pred ---cccchhHHHHHHhccCCChH
Confidence 22357777777664433343
No 271
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=50.87 E-value=2.8e+02 Score=34.81 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 001255 1017 TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1074 (1113)
Q Consensus 1017 ~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~l 1074 (1113)
++.-++..+.++.+.-. ... ..-..++..+.+++.|+.+-||+.|+..+..+...-
T Consensus 362 ~RtKalqv~~kifdl~s-k~~-~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 362 TRTKALQVLEKIFDLNS-KTV-GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred HHHHHHHHHHHHHhCcc-ccc-chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 44445655555553221 111 223455667899999999999999999998876543
No 272
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.21 E-value=4.8e+02 Score=32.09 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=95.0
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhchhhh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDAD--SSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n--~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
..+...+...|. .|++-.++|.-++.+++.-... =+++++.+++.+-+.. ..+|..++.+++++.+.... -
T Consensus 390 k~~~~~l~e~~~-~We~~EAaLF~l~~~~~~~~~~-----e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~-~ 462 (559)
T KOG2081|consen 390 KQMYIRLKENNA-SWEEVEAALFILRAVAKNVSPE-----ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQ-H 462 (559)
T ss_pred HHHHHHHccCCC-chHHHHHHHHHHHHHhccCCcc-----ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHh-C
Confidence 334444444333 4999999999999888765532 2344555666554542 22888899999988875432 1
Q ss_pred hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh--hHHHHhhhhhc------cCChhHHHHHHHHHHHHHHhh
Q 001255 961 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--RCLSVIVPLLV------TEDEKTLVTCINCLTKLVGRL 1032 (1113)
Q Consensus 961 ~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~--~~l~~l~~~l~------s~~~~~~~~al~~L~~lie~~ 1032 (1113)
-.+++.++..++....+.. ...+|..|...++..|--. -+++.+...+. ..+.. ..+++-+..++.++
T Consensus 463 p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~e~--a~l~~~~s~i~~~l 538 (559)
T KOG2081|consen 463 PELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINEEA--ACLLQGISLIISNL 538 (559)
T ss_pred cHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHhcC
Confidence 1356777777777777764 6667777777777655321 23343333332 12111 22567777888888
Q ss_pred CHHHHHhhhhhHHHHHH
Q 001255 1033 SQEELMAQLPSFLPALF 1049 (1113)
Q Consensus 1033 ~~~~l~~~L~~lip~l~ 1049 (1113)
+.+.+..++.+++....
T Consensus 539 p~~k~~~~~~el~~~~l 555 (559)
T KOG2081|consen 539 PAHKAKIALEELCEPQL 555 (559)
T ss_pred CHhhhhHHHHHHhhHHH
Confidence 88888776666654444
No 273
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=49.74 E-value=2.2e+02 Score=36.54 Aligned_cols=149 Identities=14% Similarity=0.138 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHH--hhchHHHHH--HHHHHHHHhhhhhhH---HHHHhHHHHHHHHhhh--C----CCcccHHHHHHHh
Q 001255 43 QACHLLCFLSKEL--LGDFEACAE--MFIPVLFKLVVITVL---VIAESSDNCIKTMLRN--C----KAVRVLPRIADCA 109 (1113)
Q Consensus 43 ~Ac~~l~~La~~L--~~~f~~~a~--~~lp~Ll~~~~~t~k---vi~~sa~~ai~~ii~~--~----~~~r~l~~i~~~~ 109 (1113)
-.|.||+.|+.-- .-+|..++. .++|.|.+.+..+.. ++-+. ...+-++... | ....+++.+++-+
T Consensus 507 ~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~-Vi~~gtla~d~~~A~lL~~sgli~~Li~LL 585 (708)
T PF05804_consen 507 FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEV-VILLGTLASDPECAPLLAKSGLIPTLIELL 585 (708)
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHH-HHHHHHHHCCHHHHHHHHhCChHHHHHHHH
Confidence 3445555555433 336777774 688888888755432 22221 1122222211 1 1246777777766
Q ss_pred hhcCCHH---HHHHHHHHHHHHHhhCCCch-hhhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhChHHHHHHHh-
Q 001255 110 KNDRNAV---LRARCCEYALLVLEHWPDAP-EIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFS- 184 (1113)
Q Consensus 110 ~~~K~~~---vR~~~a~~L~~~l~~~~~~~-~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~~~~p~~a~~ll~- 184 (1113)
+.|.-. |=+.+.-|..+ +.+ +.+. .+-+. ..+...+...++|.|++||+.|=.|+...+.+-++.++++-.
T Consensus 586 -~~kqeDdE~VlQil~~f~~l-l~h-~~tr~~ll~~-~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~ 661 (708)
T PF05804_consen 586 -NAKQEDDEIVLQILYVFYQL-LFH-EETREVLLKE-TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRRE 661 (708)
T ss_pred -HhhCchHHHHHHHHHHHHHH-HcC-hHHHHHHHhc-cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHH
Confidence 455532 22222222222 222 1111 12222 235677888999999999999999999999998888877433
Q ss_pred cCCHHHHHHHhh
Q 001255 185 SFDPAIQRIINE 196 (1113)
Q Consensus 185 ~Ld~~~~k~l~~ 196 (1113)
++.--=+.+|+-
T Consensus 662 kF~~hN~~WLe~ 673 (708)
T PF05804_consen 662 KFRWHNAQWLEM 673 (708)
T ss_pred HHHHHHHHHHHH
Confidence 444444555553
No 274
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=49.38 E-value=1.6e+02 Score=36.87 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHHHHhh-cC-h--------hhHHHHhhhhhcc----CChhHHHHHHHHHHHHHHhhCHHHHHhhhhhH
Q 001255 979 VPKVSNEAEHCLTVVLSQ-YD-P--------FRCLSVIVPLLVT----EDEKTLVTCINCLTKLVGRLSQEELMAQLPSF 1044 (1113)
Q Consensus 979 ~~~Vr~aa~~~l~~l~~~-~~-p--------~~~l~~l~~~l~s----~~~~~~~~al~~L~~lie~~~~~~l~~~L~~l 1044 (1113)
...++..|.-++..++.. |. . ..+++++...+.. ++....+.+|+.|+.+ |.... +..+
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~----g~~~~---i~~l 482 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA----GHPSS---IKVL 482 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc----CChhH---HHHH
Confidence 456788888888777752 21 1 3456666655542 2333445566655543 22222 2223
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001255 1045 LPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1045 ip~l~~~l~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
.|.+. +=.+....+|.+|+.+|-.+-....
T Consensus 483 ~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p 512 (574)
T smart00638 483 EPYLE-GAEPLSTFIRLAAILALRNLAKRDP 512 (574)
T ss_pred HHhcC-CCCCCCHHHHHHHHHHHHHHHHhCc
Confidence 33332 2345677899999999985544343
No 275
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=49.14 E-value=5.6e+02 Score=30.98 Aligned_cols=182 Identities=16% Similarity=0.216 Sum_probs=99.6
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHH--hHHHHHHHHHHHh-------cC-CCHHHHHHHHHHHHH
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTK--YFNQILTAVLEVL-------DD-ADSSVREVALSLINE 951 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~--~f~~ll~~Ll~~L-------~D-~n~~vr~~aL~~L~~ 951 (1113)
.+++++.+..++| ++|-+||--+.++++.++.....+ .|..+=..++++| +| .+...+..++.+|.-
T Consensus 13 ~~~~~~L~~~k~D---~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLac 89 (698)
T KOG2611|consen 13 LDDCLKLLKGKRD---EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLAC 89 (698)
T ss_pred hhhHHHHhcccCh---HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 3556777777775 799999999999998876554322 2333222234444 12 245677888899988
Q ss_pred HHHhchhhhhhHHH---HHHHHHHHHhCCCh----HHHHHHHHHHHHHHHhhcChh--h-----HHHHhhhhhccCChhH
Q 001255 952 MLKNQKDVMEDSVE---IVIEKLLHVTKDAV----PKVSNEAEHCLTVVLSQYDPF--R-----CLSVIVPLLVTEDEKT 1017 (1113)
Q Consensus 952 L~~~~~~~~~~~~~---~~l~~ll~~~~Ds~----~~Vr~aa~~~l~~l~~~~~p~--~-----~l~~l~~~l~s~~~~~ 1017 (1113)
.|+.-.-.-.+.+- .+|..++.+-+|.. -.|.+.+-+|+..++.+ ++- . .+++++++....++.+
T Consensus 90 FC~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~ 168 (698)
T KOG2611|consen 90 FCRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSH 168 (698)
T ss_pred HhCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCch
Confidence 88743222222233 34455555556654 34788899999999877 321 1 3556665554444443
Q ss_pred HH-HHHHHHHHHHHhh--CHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001255 1018 LV-TCINCLTKLVGRL--SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1068 (1113)
Q Consensus 1018 ~~-~al~~L~~lie~~--~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv 1068 (1113)
.. .+++.+-.++... .++.. +.+-.++.++...|.-.+.+-+=.....+.
T Consensus 169 d~alal~Vlll~~~~~~cw~e~~-~~flali~~va~df~~~~~a~KfElc~lL~ 221 (698)
T KOG2611|consen 169 DMALALKVLLLLVSKLDCWSETI-ERFLALIAAVARDFAVLHNALKFELCHLLS 221 (698)
T ss_pred hHHHHHHHHHHHHHhcccCcCCH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22 2333333222111 11222 233345667776666444444333333333
No 276
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=49.06 E-value=3.9e+02 Score=29.19 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=68.2
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhcc-
Q 001255 934 LDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVT- 1012 (1113)
Q Consensus 934 L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s- 1012 (1113)
-...++.+....|+.|..++.+- . .....++..|.......+...+--+...+..+...- +++++.|.+.+..
T Consensus 10 ~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~--~r~f~~L~~~L~~~ 83 (234)
T PF12530_consen 10 GKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN--DRHFPFLQPLLLLL 83 (234)
T ss_pred cCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC--chHHHHHHHHHHHH
Confidence 34456767777777777777632 2 223333333333333343444333444443333321 1233444333321
Q ss_pred ------------CChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Q 001255 1013 ------------EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF-GNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1013 ------------~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l-~D~~seVRkaAv~clv~i~~ 1072 (1113)
..|.....+-..+..+....+. +-.++++.|..++ ++.+..++..|+.+|..+|.
T Consensus 84 ~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 84 ILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 1233333222233344433332 5577888999999 89999999999999999883
No 277
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.83 E-value=2.4e+02 Score=35.94 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 001255 142 ADLYEDLIRCCVADAMSEVRSTARMCYRMFA 172 (1113)
Q Consensus 142 ~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~ 172 (1113)
...|.-.+++|+.|.|-+||+.|+-++..+.
T Consensus 501 ~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 501 LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 4567778999999999999999998777666
No 278
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=48.63 E-value=21 Score=27.88 Aligned_cols=26 Identities=35% Similarity=0.618 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 001255 924 NQILTAVLEVLDDADSSVREVALSLI 949 (1113)
Q Consensus 924 ~~ll~~Ll~~L~D~n~~vr~~aL~~L 949 (1113)
..++..+..+|.|..+.||+.|+.+|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 47788899999999999999998864
No 279
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=48.52 E-value=77 Score=29.92 Aligned_cols=60 Identities=12% Similarity=0.264 Sum_probs=52.4
Q ss_pred hHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh-hhhHHHHHHHHHHHHhCCC
Q 001255 919 WTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV-MEDSVEIVIEKLLHVTKDA 978 (1113)
Q Consensus 919 ~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~-~~~~~~~~l~~ll~~~~Ds 978 (1113)
+.+++..++.-+...+..-.+.||.-++.+|.-|++..+.. +..+..-+|+..++.++-.
T Consensus 5 l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 5 LSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 34678888888899999999999999999999999999887 7788888999999988865
No 280
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=47.89 E-value=1.4e+02 Score=37.63 Aligned_cols=126 Identities=11% Similarity=0.092 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhchhh-hhhHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHhhcC------hh------hHHHHhhhh
Q 001255 945 ALSLINEMLKNQKDV-MEDSVEIVIEKLLHVT--KDAVPKVSNEAEHCLTVVLSQYD------PF------RCLSVIVPL 1009 (1113)
Q Consensus 945 aL~~L~~L~~~~~~~-~~~~~~~~l~~ll~~~--~Ds~~~Vr~aa~~~l~~l~~~~~------p~------~~l~~l~~~ 1009 (1113)
|+.++-.+....+.. |.+ +..++..++... +++.-....+++.|++.++.... |. -+++.+.|.
T Consensus 390 al~fl~~~~sKrke~Tfqg-iLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~ 468 (970)
T COG5656 390 ALFFLIISKSKRKEETFQG-ILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPA 468 (970)
T ss_pred HHHHHHHHhcccchhhhhh-HHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHh
Confidence 455555555554443 322 333445555433 35555667788889888876654 11 167777888
Q ss_pred hccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 001255 1010 LVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1074 (1113)
Q Consensus 1010 l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~l 1074 (1113)
++++-.--+..+++++..+-+.+.-..+ +..+..++..|+.|..=.|+-.|..+|--++.+.
T Consensus 469 f~s~ygfL~Srace~is~~eeDfkd~~i---ll~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 469 FRSNYGFLKSRACEFISTIEEDFKDNGI---LLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred hcCcccchHHHHHHHHHHHHHhcccchH---HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 8776443344457888887666664443 5667788899999988888888877776555433
No 281
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=46.85 E-value=73 Score=40.12 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHhhc-Ch---------------hhHHHHhhhhhc----cCChhHHHHHHHHHHHHHHhhCHHHHH
Q 001255 979 VPKVSNEAEHCLTVVLSQY-DP---------------FRCLSVIVPLLV----TEDEKTLVTCINCLTKLVGRLSQEELM 1038 (1113)
Q Consensus 979 ~~~Vr~aa~~~l~~l~~~~-~p---------------~~~l~~l~~~l~----s~~~~~~~~al~~L~~lie~~~~~~l~ 1038 (1113)
.+.++.+|.-++..++..+ .. .++++++...+. .++...++.+|+-|+.+ |
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~----g----- 518 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL----G----- 518 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----T-----
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc----C-----
Confidence 3567777777777666432 22 134444444443 23445566666666654 2
Q ss_pred hhhhhHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHhh
Q 001255 1039 AQLPSFLPALFEAFGNQ---SADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1039 ~~L~~lip~l~~~l~D~---~seVRkaAv~clv~i~~~lG 1075 (1113)
++.++|.+...+.+. ...+|.+|+.+|-.+.....
T Consensus 519 --~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 519 --HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp ---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred --CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 234445555555555 88999999998875533333
No 282
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.45 E-value=5.2e+02 Score=29.88 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=30.6
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhh-hhHhhh
Q 001255 1046 PALFEAFGN-QSADVRKTVVFCLVDIYIMLGK-AFLPYL 1082 (1113)
Q Consensus 1046 p~l~~~l~D-~~seVRkaAv~clv~i~~~lGe-~i~p~l 1082 (1113)
..+++|++| -+-.+|..+..|+.-+-..-|. +++.++
T Consensus 286 ~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~I 324 (461)
T KOG4199|consen 286 DTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTI 324 (461)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHH
Confidence 568889998 7788999999999998888894 666665
No 283
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.02 E-value=4.3e+02 Score=33.89 Aligned_cols=140 Identities=20% Similarity=0.315 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhH-HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHhh--cChhhHHHHhhhhhc---
Q 001255 939 SSVREVALSLINEMLKNQKDVMEDS-VEIVIEKLLHVTKDA-VPKVSNEAEHCLTVVLSQ--YDPFRCLSVIVPLLV--- 1011 (1113)
Q Consensus 939 ~~vr~~aL~~L~~L~~~~~~~~~~~-~~~~l~~ll~~~~Ds-~~~Vr~aa~~~l~~l~~~--~~p~~~l~~l~~~l~--- 1011 (1113)
..+|.+...+|+.....+ +... -..+-..+++.+.|. ..+|+=++..+++.++.- +.++..+|++-....
T Consensus 501 RiiRRRVa~ilg~Wvsvq---~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lf 577 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVSVQ---QKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLF 577 (978)
T ss_pred hHHHHHHHHHHhhhhhee---chHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHH
Confidence 337777778888777632 2222 223444556777777 678888999999999965 455666666522221
Q ss_pred ----c-CChhHHHHHHHHHHHHHHhhCHHH--HHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh---hhHhh
Q 001255 1012 ----T-EDEKTLVTCINCLTKLVGRLSQEE--LMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK---AFLPY 1081 (1113)
Q Consensus 1012 ----s-~~~~~~~~al~~L~~lie~~~~~~--l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe---~i~p~ 1081 (1113)
. ..-.+++..+..|+.++++.+... ....+-.++|.+-+.-. .++-.|-+-...|-.+-..+|. .++|+
T Consensus 578 kll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~f 656 (978)
T KOG1993|consen 578 KLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPF 656 (978)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHH
Confidence 1 233456666899999998887422 22234455666665544 6778999999999999999993 57776
Q ss_pred h
Q 001255 1082 L 1082 (1113)
Q Consensus 1082 l 1082 (1113)
+
T Consensus 657 L 657 (978)
T KOG1993|consen 657 L 657 (978)
T ss_pred H
Confidence 5
No 284
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.03 E-value=1.4e+02 Score=44.13 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc----hh----hhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Q 001255 924 NQILTAVLEVLDDADSSVREVALSLINEMLKNQ----KD----VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS 995 (1113)
Q Consensus 924 ~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~----~~----~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~ 995 (1113)
.-++++|...+...|..++..+..+|..+...+ |. ...+..+.++++++++|-|+.---+..+...+..+..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 345677888888888888888888888877754 32 1346788899999998888766666666666776666
Q ss_pred hcChhhHHH-------Hhhhhhcc-----CChhHHHHHHHHHHHHHHhhCHHH----HH-hhhhhHHHHHHHHhcCCCHH
Q 001255 996 QYDPFRCLS-------VIVPLLVT-----EDEKTLVTCINCLTKLVGRLSQEE----LM-AQLPSFLPALFEAFGNQSAD 1058 (1113)
Q Consensus 996 ~~~p~~~l~-------~l~~~l~s-----~~~~~~~~al~~L~~lie~~~~~~----l~-~~L~~lip~l~~~l~D~~se 1058 (1113)
..+..-++. .+.-.+.. .+.+ ...|..++-.+...+-.++ .. .....++-.++..+-|.++.
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~-~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLP-LDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccch-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 666322222 22222221 1222 2233444444443332222 21 23567777889999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001255 1059 VRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1059 VRkaAv~clv~i~~~lG 1075 (1113)
||+.++.+|-.+..+-|
T Consensus 1142 VR~~~~~~L~~i~~~s~ 1158 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSG 1158 (3550)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999998887
No 285
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.23 E-value=9.7e+02 Score=34.07 Aligned_cols=198 Identities=20% Similarity=0.307 Sum_probs=113.8
Q ss_pred HHHHHHHHHh---c---C-CchhhHHhHHHHHHHHHHHhcCCCHHH-HHHH--HHHHHHHHHhchhhhh-h--HHHHHHH
Q 001255 903 ALQQLIKASV---A---N-DHSIWTKYFNQILTAVLEVLDDADSSV-REVA--LSLINEMLKNQKDVME-D--SVEIVIE 969 (1113)
Q Consensus 903 AL~~L~~~l~---~---~-~~~~~~~~f~~ll~~Ll~~L~D~n~~v-r~~a--L~~L~~L~~~~~~~~~-~--~~~~~l~ 969 (1113)
||..+..++. + + ....|..-|+..+...++.+.|+.+.- =+-+ +.++-....+...-.. + ..-.++.
T Consensus 1804 aLa~lkslvs~~~~k~d~~~~~~w~~l~~sal~vi~e~~~~~~~~~~nevs~l~~i~vf~~sa~~~v~~~~ql~~~~c~~ 1883 (2067)
T KOG1822|consen 1804 ALAALKSLVSAMMEKLDAPVTVLWETLLRSALAVILEALDDSEPTSKNEVSTLLAITVFTLSAPEDVVDDPQLQFQSCIN 1883 (2067)
T ss_pred HHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCcccccchhhHHHHHHHHHhhcCcccccccHHHHHHHHHH
Confidence 6666555542 1 2 345688888999999999998643321 1111 1111111111111111 1 1224566
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHhhcCh--------hhHHHHhhhhhc---cC------ChhHHHHHHHHHHHHHHhh
Q 001255 970 KLLHVTKDAVPKVSNEAEHCLTVVLSQYDP--------FRCLSVIVPLLV---TE------DEKTLVTCINCLTKLVGRL 1032 (1113)
Q Consensus 970 ~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p--------~~~l~~l~~~l~---s~------~~~~~~~al~~L~~lie~~ 1032 (1113)
.+-..+..+++.|+-.....+..+..+... ..|-+++...++ ++ +-.+..+|++.+..++..
T Consensus 1884 ~l~~~L~s~n~~v~~k~~q~l~sif~~~~~~~~~p~i~~~la~vi~~~l~~~d~~~~~s~sel~i~~e~i~~~e~lV~~- 1962 (2067)
T KOG1822|consen 1884 SLKLALNSSNPSVQAKTLQLLPSIFSNSNDANAYPYIDYSLAPVIKESLTAEDSNKPKSESELEIVEECIKVLETLVDK- 1962 (2067)
T ss_pred HHHHHhccCChHHHHHHHHhHHHHHhccccccccccHHHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhhc-
Confidence 666778888889999999999888876544 124555555553 21 112445677776666632
Q ss_pred CHH-HHHhhhhhHHHHHHHHhcCCC---------HHHHHHHHHHHHHHHHHhhhhhHhhhhcCChhhHhhHHHHHHhhhc
Q 001255 1033 SQE-ELMAQLPSFLPALFEAFGNQS---------ADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQ 1102 (1113)
Q Consensus 1033 ~~~-~l~~~L~~lip~l~~~l~D~~---------seVRkaAv~clv~i~~~lGe~i~p~l~~L~~s~~kLl~~yi~R~~~ 1102 (1113)
+.+ .=...++-++|.++.-+.|.. -..++-|..=|+++......+++..++..++-|+|+... |+....
T Consensus 1963 ~ee~~~~q~~sllIp~llsfl~d~~s~~~~~~~~~~lh~~a~~~L~~i~~~~p~~fKs~i~~sp~l~~kle~a-Iq~~~~ 2041 (2067)
T KOG1822|consen 1963 SEEQKRIQVLSLLIPLLLSFLLDETSLGSHPSYEKKLHEFALQNLLAIGPLYPIEFKSVIGSSPELQQKLEAA-IQSSQE 2041 (2067)
T ss_pred cchhhhhHHHHHHHHHHHHHhccccccccCchHHHhHHHHHHHHHHHhcCCCcHHHHHHHhcCchhhHHHHHH-HHhhhh
Confidence 222 111236777888888884432 234444555555555555568888889999888888877 766543
No 286
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=43.98 E-value=5.4e+02 Score=34.90 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhh
Q 001255 926 ILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ 996 (1113)
Q Consensus 926 ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~ 996 (1113)
|+.+..+.....+..|......+|.+++-......-++. .+|.-+|-.++|...+||..|...|..+-..
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~-~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFW-ELLNLVLFKLGDESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHH-HhHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 667777666667777877777888887765543322333 4777788889999999999999999988754
No 287
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=43.85 E-value=1.3e+02 Score=28.73 Aligned_cols=92 Identities=9% Similarity=0.001 Sum_probs=53.6
Q ss_pred hhHHHHHhHHHHHHHHhhhCCCcccHHHHHHHhhhcCCHHHHHHHHHHH-HHHHhhCCCchhhhhcHHHHHHHHHHHhcC
Q 001255 77 TVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYA-LLVLEHWPDAPEIQRSADLYEDLIRCCVAD 155 (1113)
Q Consensus 77 t~kvi~~sa~~ai~~ii~~~~~~r~l~~i~~~~~~~K~~~vR~~~a~~L-~~~l~~~~~~~~~~~~~~~l~~~i~k~l~D 155 (1113)
+...|.+-..-|+... -....++..+...+. |.+.-++..+.|| .-+++.+... ...-....+.+++......
T Consensus 17 S~~~I~~lt~~a~~~~---~~a~~iv~~i~~~i~--~~~~~~KL~~LYL~dsIvkn~~~~-~~~~~~~~~~~~f~~~~~~ 90 (114)
T cd03562 17 SQPSIQTLTKLAIENR---KHAKEIVEIIEKHIK--KCPPEQKLPLLYLLDSIVKNVGRK-YKEFFSEFLVPLFLDAYEK 90 (114)
T ss_pred cHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHHh
Confidence 5555554444444433 122466666666662 3333444445554 5666676543 3333344456677777778
Q ss_pred CChHHHHHHHHHHHHHHhh
Q 001255 156 AMSEVRSTARMCYRMFAKT 174 (1113)
Q Consensus 156 a~~eVR~~AR~a~~~~~~~ 174 (1113)
+++.+|..-++.|.++.+.
T Consensus 91 ~~~~~r~kl~rl~~iW~~~ 109 (114)
T cd03562 91 VDEKTRKKLERLLNIWEER 109 (114)
T ss_pred CCHHHHHHHHHHHHHccCC
Confidence 8999998888888777544
No 288
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=43.71 E-value=1.5e+02 Score=34.82 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhc----hhhhhhHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHhhcCh-------hhHHHHhhhh
Q 001255 943 EVALSLINEMLKNQ----KDVMEDSVEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVLSQYDP-------FRCLSVIVPL 1009 (1113)
Q Consensus 943 ~~aL~~L~~L~~~~----~~~~~~~~~~~l~~ll~~~~--Ds~~~Vr~aa~~~l~~l~~~~~p-------~~~l~~l~~~ 1009 (1113)
..+|.+|..+++.. .......++.++|.+++++- |-.+.++.-+.+.++.|++.+.. +.|-.++..+
T Consensus 229 ~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsf 308 (373)
T PF14911_consen 229 ASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSF 308 (373)
T ss_pred HHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHH
Confidence 34677777777763 23345568889999998763 44578999999999999988752 2355555555
Q ss_pred hccC--ChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcC
Q 001255 1010 LVTE--DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 1054 (1113)
Q Consensus 1010 l~s~--~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D 1054 (1113)
++.- -+.... .++|..+++.. ++.+ ..++|.+.+.+.|
T Consensus 309 vqk~l~~~t~~~--f~~l~~vA~l~-p~lV----~~Lip~i~q~l~~ 348 (373)
T PF14911_consen 309 VQKYLAHYTYQY--FQFLEKVAELD-PQLV----ISLIPTIRQSLKD 348 (373)
T ss_pred HHHHhhhhhHHH--HHHHHHHHHhC-HHHH----HHHHHHHHHHHHH
Confidence 5421 111112 56666666432 2333 4455666655544
No 289
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.62 E-value=1e+02 Score=42.20 Aligned_cols=136 Identities=18% Similarity=0.277 Sum_probs=83.3
Q ss_pred hhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhh-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Q 001255 917 SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED-SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS 995 (1113)
Q Consensus 917 ~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~-~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~ 995 (1113)
.+|..+.-.++..+-.+..|....||..+|.++.+++...|..|.. |-+.++..++--+..-+...-..
T Consensus 1166 ~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~---------- 1235 (1514)
T KOG0929|consen 1166 DVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDES---------- 1235 (1514)
T ss_pred ccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchh----------
Confidence 3455555556666767777888889999999999999999988865 34545442222222111111111
Q ss_pred hcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 001255 996 QYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 996 ~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lG 1075 (1113)
.. .+|+. -+-..|+..+-.|+.++= +.+...|+.++-.+..|+.-.+..+-.....||+.+....|
T Consensus 1236 -~~--------~eW~~----tT~~~Al~~~v~lf~~~~-~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~ 1301 (1514)
T KOG0929|consen 1236 -EK--------DEWLS----TTCNHALQALVDLFTQFF-KQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNG 1301 (1514)
T ss_pred -hh--------hHHHH----HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcc
Confidence 00 11221 112223333333332221 44445677777888899999999999999999999998887
Q ss_pred h
Q 001255 1076 K 1076 (1113)
Q Consensus 1076 e 1076 (1113)
+
T Consensus 1302 ~ 1302 (1514)
T KOG0929|consen 1302 E 1302 (1514)
T ss_pred c
Confidence 3
No 290
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=43.40 E-value=94 Score=32.26 Aligned_cols=56 Identities=16% Similarity=0.292 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHhh-CHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1015 EKTLVTCINCLTKLVGRL-SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1015 ~~~~~~al~~L~~lie~~-~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
.....+|+.|+..+++.. |.+.+-. -+.++..|+.++..++..+|+.+...|..+|
T Consensus 130 ~~~~~~~l~Clkal~n~~~G~~~v~~-~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 130 IDIEHECLRCLKALMNTKYGLEAVLS-HPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHC-SSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHc-CcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 345567888887777533 3343322 4677899999999999999999999999887
No 291
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=43.03 E-value=7.8e+02 Score=30.94 Aligned_cols=133 Identities=11% Similarity=0.170 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhc---hhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh-------HHHH
Q 001255 936 DADSSVREVALSLINEMLKNQ---KDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR-------CLSV 1005 (1113)
Q Consensus 936 D~n~~vr~~aL~~L~~L~~~~---~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~-------~l~~ 1005 (1113)
-+++..+..||.++..+.+.. ...++. .-+..+++..+-|+.--|..++..++..++--+++.+ .+..
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~--~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~ 465 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKR--NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI 465 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCcc--chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence 357888888999888876643 333321 1234445555588888899999999988887777754 4555
Q ss_pred hhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhH-HHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 1006 IVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSF-LPALFEAFGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus 1006 l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~l-ip~l~~~l~D~~seVRkaAv~clv~i 1070 (1113)
|...+.+.+.-.+.-++..|..+.=......-...+..+ +..+..-++|++.+|-..+...|-.+
T Consensus 466 l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 466 LESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 666665655555555566666665222222222223333 45677888999999999888766554
No 292
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=42.46 E-value=2.7e+02 Score=26.94 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHHHHhchh---hhhhHHHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhh
Q 001255 938 DSSVREVALSLINEMLKNQKD---VMEDSVEIVIEKLLHVTK----DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLL 1010 (1113)
Q Consensus 938 n~~vr~~aL~~L~~L~~~~~~---~~~~~~~~~l~~ll~~~~----Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l 1010 (1113)
|..-.+.||..+..|.+.... .+..|++-++..|+..-. +...+.|..|..++- +..|..+.++|...+
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~----v~~P~~~~~~L~~~f 93 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALV----VAAPEKVAPYLTEEF 93 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHH----HHSGGGHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHH----HHhhHHHHHHHHHHH
Confidence 455678899999999998766 788899888888886554 445566665555443 246878999888777
Q ss_pred ccCCh
Q 001255 1011 VTEDE 1015 (1113)
Q Consensus 1011 ~s~~~ 1015 (1113)
=+.++
T Consensus 94 ~~~~~ 98 (114)
T PF10193_consen 94 FSGDY 98 (114)
T ss_dssp TTS--
T ss_pred hcCCC
Confidence 55544
No 293
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=42.42 E-value=34 Score=31.65 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcCChhhHhhHHHH
Q 001255 1017 TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIY 1096 (1113)
Q Consensus 1017 ~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L~~s~~kLl~~y 1096 (1113)
.+.+++-.|+.+|..++- .+.+.+|.++-.|.+..+| ...|++.+.+|+..+.+.--|.-.-+=..+++.|+..|+..
T Consensus 5 ~rH~~VLGL~Alv~a~Py-~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W~~~~~~Ft~~ql~~l~~~ 82 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPY-DVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTWHEHKKKFTEDQLEDLEDV 82 (90)
T ss_dssp HHHHHHHHHHHHHTT-S---SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTHHHHGGG--SSTTGGGSS-
T ss_pred HHHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccHHHHHHhCCHHHHHHHHcC
Confidence 355666677788877663 3345788888888888887 78999999999999998876543444456677776666543
No 294
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=42.38 E-value=1.6e+02 Score=30.56 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=36.1
Q ss_pred HHHhHHHHHHHHhhhC-------CCcccHHHHHHHhhhcCCHHHHHHHHHHHHHH
Q 001255 81 IAESSDNCIKTMLRNC-------KAVRVLPRIADCAKNDRNAVLRARCCEYALLV 128 (1113)
Q Consensus 81 i~~sa~~ai~~ii~~~-------~~~r~l~~i~~~~~~~K~~~vR~~~a~~L~~~ 128 (1113)
+...+-.|+++|+.+. ..+..+..|+..+ .+.++.+|..+.+.|..+
T Consensus 132 ~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 132 IEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHH
Confidence 4566778888888743 3578899999888 689999999999998654
No 295
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=41.88 E-value=2.7e+02 Score=33.18 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=42.0
Q ss_pred CChHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhh-HHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhch
Q 001255 880 PSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIW-TKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQK 957 (1113)
Q Consensus 880 ~~i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~-~~~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~ 957 (1113)
+.++-||+.+...|-. ...|.++..-|.+++...+.+.+ ...++.||.. .+.. -.......+.+|..|+++..
T Consensus 180 ~~lD~Llrmf~aPn~e-t~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~l----AK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLE-TSVRVEAARLLEQILVAENRDRVARIGLGVILNL----AKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred chHHHHHHHHhCCchh-HHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhh----hhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 3466677777766642 35699999888888766665432 1123332222 2222 23344456778888887544
No 296
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=40.37 E-value=2.1e+02 Score=37.93 Aligned_cols=114 Identities=17% Similarity=0.202 Sum_probs=67.9
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHhhcChh----hHHHHhhhhhccCChhHHHHHHHHHHHHHHh---hCHHH-HHhhhhh
Q 001255 972 LHVTKDAVPKVSNEAEHCLTVVLSQYDPF----RCLSVIVPLLVTEDEKTLVTCINCLTKLVGR---LSQEE-LMAQLPS 1043 (1113)
Q Consensus 972 l~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~----~~l~~l~~~l~s~~~~~~~~al~~L~~lie~---~~~~~-l~~~L~~ 1043 (1113)
++.+.|-.+.||.-+.+.|-.|+..||-. --|+|+==.|..++...|+.|++.|-.|.++ .+.=+ .-....+
T Consensus 293 VHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 293 VHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD 372 (1048)
T ss_pred eeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 36778988999999999999999888763 2455543233456777888888888888876 22111 0011111
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHH--HHHhh-hhhHhhhhcCCh
Q 001255 1044 FLPALFEAFGNQSADVRKTVVFCLVDI--YIMLG-KAFLPYLERLNS 1087 (1113)
Q Consensus 1044 lip~l~~~l~D~~seVRkaAv~clv~i--~~~lG-e~i~p~l~~L~~ 1087 (1113)
=| |--+.-|.+.+||..+...+... +..+. +++.+...-+-+
T Consensus 373 RI--VeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~d 417 (1048)
T KOG2011|consen 373 RI--VEMADRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIYD 417 (1048)
T ss_pred HH--HHHHhhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHHHhc
Confidence 11 11124566777777776666555 23333 366665554433
No 297
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=40.37 E-value=2.4e+02 Score=26.84 Aligned_cols=104 Identities=14% Similarity=0.200 Sum_probs=64.8
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhh
Q 001255 883 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED 962 (1113)
Q Consensus 883 ~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~ 962 (1113)
...|..|...+. -...++.|..++.++. .+-..+...+.+.+....+.-+..+|.++..|+++.+.+...
T Consensus 5 ~~~l~~L~~~~~-----S~~~I~~lt~~a~~~~-----~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~ 74 (114)
T cd03562 5 NALLEKLTFNKN-----SQPSIQTLTKLAIENR-----KHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKE 74 (114)
T ss_pred HHHHHHHHcCcc-----cHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHH
Confidence 445666655431 2234444444443332 234455666667776666666678899999999998765444
Q ss_pred HHHHH-HHHHHHHhCCChHHHHHHHHHHHHHHHhh
Q 001255 963 SVEIV-IEKLLHVTKDAVPKVSNEAEHCLTVVLSQ 996 (1113)
Q Consensus 963 ~~~~~-l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~ 996 (1113)
+.... .+.+.+.+....+.+++.....++.|-+.
T Consensus 75 ~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW~~~ 109 (114)
T cd03562 75 FFSEFLVPLFLDAYEKVDEKTRKKLERLLNIWEER 109 (114)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 43333 44444566666688999999999998765
No 298
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=40.07 E-value=6.6e+02 Score=29.99 Aligned_cols=180 Identities=15% Similarity=0.140 Sum_probs=105.7
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHHHhhCcch
Q 001255 487 SDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLD-DPHHKVAQAALSTLADIIPSCRKPF 565 (1113)
Q Consensus 487 ~e~l~~~~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~-Dsn~kV~~~~L~~l~~l~~~~~~~~ 565 (1113)
...|. ++.|.|=.||.--..-|..+.........++ ...+...|.+.+- +.++..+.-.|++++.++.+...++
T Consensus 136 ~~Ll~--l~~S~D~rER~~lk~~l~~iy~k~~~~r~~I---r~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 136 KKLLE--LFDSPDPRERDYLKTILHRIYGKFPNLRSFI---RKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp HHHHH--TTTSSTHHHHHHHHHHHHHHHHH-TTTHHHH---HHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS-
T ss_pred HHHHH--HcCCCCHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCC
Confidence 56677 7899999999999999999988765433322 2345556666554 4666788999999999999988777
Q ss_pred HHHHHHHHHHHHHHh-c-CCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccC---CCHHHHHHHHHHHHHHHhhhcc
Q 001255 566 ESYMERILPHVFSRL-I-DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKHAM 640 (1113)
Q Consensus 566 ~~~l~~ll~~ll~kl-g-D~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~---knpkvk~~~L~~l~~~l~~~~~ 640 (1113)
+..-..++-.++--| . ..-......-..|+..+.+.-+ . +...+.+.+..+ .|+.=.+-.|+-+.+.+. .+
T Consensus 211 k~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp-~-l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~--~~ 286 (409)
T PF01603_consen 211 KEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP-S-LAEPVIKGLLKHWPKTNSQKEVLFLNELEEILE--VL 286 (409)
T ss_dssp -HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G-G-GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHT--T-
T ss_pred cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-h-hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH--hc
Confidence 554444444444434 2 3344456677777777775422 1 123333444333 355555555666655554 22
Q ss_pred CCCCCCChhhHHHHHHhHccccCCCCHHHHHHHHHHH
Q 001255 641 NSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCI 677 (1113)
Q Consensus 641 ~~~~~~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L 677 (1113)
++..|. .-+......+..|+...|..|-+.|..++
T Consensus 287 ~~~~f~--~i~~~lf~~la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 287 PPEEFQ--KIMVPLFKRLAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp -HHHHH--HHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred CHHHHH--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 222221 22344556677788889999988877543
No 299
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=40.04 E-value=3.6e+02 Score=31.12 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=88.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH-hchhh---h-h--hHHHHHHHHHHHHhC-CCh---------HHHHHHHHHH
Q 001255 927 LTAVLEVLDDADSSVREVALSLINEMLK-NQKDV---M-E--DSVEIVIEKLLHVTK-DAV---------PKVSNEAEHC 989 (1113)
Q Consensus 927 l~~Ll~~L~D~n~~vr~~aL~~L~~L~~-~~~~~---~-~--~~~~~~l~~ll~~~~-Ds~---------~~Vr~aa~~~ 989 (1113)
+..|-..|......+...+|++|.+|+. .-|.. + . +|--..+++++.--+ +.. +.||.....-
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5556677777776677799999999999 43322 2 1 223346777774332 111 2899999999
Q ss_pred HHHHHhhcChhh---------HHHHhhhhhccCChhHHHHHHHHHHH-HHHhh--CHH-HHHhhhhhHHHHHHHHhcCCC
Q 001255 990 LTVVLSQYDPFR---------CLSVIVPLLVTEDEKTLVTCINCLTK-LVGRL--SQE-ELMAQLPSFLPALFEAFGNQS 1056 (1113)
Q Consensus 990 l~~l~~~~~p~~---------~l~~l~~~l~s~~~~~~~~al~~L~~-lie~~--~~~-~l~~~L~~lip~l~~~l~D~~ 1056 (1113)
+-+++...++.- .+..+..+|..+...+....++.|.. +++.- ++. .+.-.=..++..|..-|...+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 999998887753 23333444444444443334444442 32111 110 010001234556666777666
Q ss_pred H----HHHHHHHHHHHHHHHHhhh
Q 001255 1057 A----DVRKTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1057 s----eVRkaAv~clv~i~~~lGe 1076 (1113)
. +|++.+...|..+|.--+.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 6 9999999999999965443
No 300
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=39.98 E-value=2.7e+02 Score=27.16 Aligned_cols=63 Identities=14% Similarity=0.300 Sum_probs=45.8
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCc-chHHHHHHHHHHHHHHHhhCcch
Q 001255 496 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDP-HHKVAQAALSTLADIIPSCRKPF 565 (1113)
Q Consensus 496 ~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Ds-n~kV~~~~L~~l~~l~~~~~~~~ 565 (1113)
...+|--.-.-+..|.......+ ..+..++..|.++|.|+ |+.|+-.+|-+|..++....+.+
T Consensus 12 ~~~~~~p~~k~~~~I~~~t~~~~-------~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~ 75 (127)
T smart00273 12 NNDEWGPKGKHLREIIQGTHNEK-------SSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRV 75 (127)
T ss_pred CCCCCCcCHHHHHHHHHHHccCH-------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHH
Confidence 44556655555665555443322 26778999999999998 99999999999999998765444
No 301
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=39.89 E-value=93 Score=29.98 Aligned_cols=77 Identities=13% Similarity=0.339 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhcC--cchHHHHHHHHHHHHHHHhhCcc----hHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHh-
Q 001255 529 EKVMKLFFQHLDD--PHHKVAQAALSTLADIIPSCRKP----FESYMERILPHVFSRLID-PKELVRQPCSTTLDIVSK- 600 (1113)
Q Consensus 529 ~~l~~~l~~~l~D--sn~kV~~~~L~~l~~l~~~~~~~----~~~~l~~ll~~ll~klgD-~K~~vr~~a~~~L~~i~e- 600 (1113)
..+++.+.+.+.. ++.|+ ..|=++.+++..++.. |...+...++.++..+.+ ..+.+|.++.+.|+.|.+
T Consensus 31 ~~Iv~~i~~~~~~~~~~~kL--~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~~ 108 (121)
T smart00582 31 KEIVELWEKYIKKAPPPRKL--PLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKKIRRLLNIWEER 108 (121)
T ss_pred HHHHHHHHHHHHhCCcccee--hhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC
Confidence 4577777666643 44455 3555666666655433 333333333334444422 225699999999999998
Q ss_pred -hCCccch
Q 001255 601 -TYSVDSL 607 (1113)
Q Consensus 601 -~~~~~~~ 607 (1113)
.|+++.+
T Consensus 109 ~iF~~~~i 116 (121)
T smart00582 109 GIFPPSVL 116 (121)
T ss_pred CCCCHHHH
Confidence 7888753
No 302
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=39.88 E-value=3.6e+02 Score=32.05 Aligned_cols=172 Identities=15% Similarity=0.114 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHHHHhcCCch-hhHHhHHHHHH---HHHHHhcCCCHHHHHHHHHHHHHHHHhch--hhhh-----hHHH
Q 001255 897 PTSKHGALQQLIKASVANDHS-IWTKYFNQILT---AVLEVLDDADSSVREVALSLINEMLKNQK--DVME-----DSVE 965 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~-~~~~~f~~ll~---~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~--~~~~-----~~~~ 965 (1113)
|..|.+++..+...+-+.... .-.++|..+-. .+-+.+.|-...+-...+..|..|+.++- +.|. ..++
T Consensus 407 ppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfskledahcle 486 (666)
T KOG4825|consen 407 PPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFSKLEDAHCLE 486 (666)
T ss_pred CccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhHHHHHH
Confidence 778888888877766554321 12334554333 34455566566667778888888877653 3343 3466
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcC--hhhH-HHHhhhhhccCChhHHHHHHHHHHHHH---HhhCH--HHH
Q 001255 966 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD--PFRC-LSVIVPLLVTEDEKTLVTCINCLTKLV---GRLSQ--EEL 1037 (1113)
Q Consensus 966 ~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~--p~~~-l~~l~~~l~s~~~~~~~~al~~L~~li---e~~~~--~~l 1037 (1113)
-.++.++---+|..+-++..|.+.+..++...- --++ -.+|..++...+.+... ....++|+ ..+++ ..+
T Consensus 487 hhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiA--kSqggkLarllkdlgkGragf 564 (666)
T KOG4825|consen 487 HHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIA--KSQGGKLARLLKDLGKGRAGF 564 (666)
T ss_pred HhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHH--HHHhHHHHHHHHhcCCCccch
Confidence 677888888899999999988888876664421 1122 33445555544444433 22333333 22222 111
Q ss_pred HhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001255 1038 MAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1072 (1113)
Q Consensus 1038 ~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~ 1072 (1113)
- ...++..-+-+..+.-.++|.+|+..+...|.
T Consensus 565 i--ediakkfgVpaeehglndkreaafaiicdmtr 597 (666)
T KOG4825|consen 565 I--EDIAKKFGVPAEEHGLNDKREAAFAIICDMTR 597 (666)
T ss_pred h--HHHHHHhCCCccccchhHHHHhHhhhhhhhcc
Confidence 0 01111222334456777888888876655553
No 303
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=39.85 E-value=4.5e+02 Score=27.31 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=56.4
Q ss_pred HHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhh
Q 001255 1004 SVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLE 1083 (1113)
Q Consensus 1004 ~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~ 1083 (1113)
+++..++.+++.=.+..|+-++...+.+ ...+..++..+...++|.+--||++.-.||..++....+.+..|+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 6778888877544455555555554433 1234556677888889999999999999999999998888888886
Q ss_pred cC
Q 001255 1084 RL 1085 (1113)
Q Consensus 1084 ~L 1085 (1113)
..
T Consensus 182 ~~ 183 (197)
T cd06561 182 KN 183 (197)
T ss_pred HH
Confidence 54
No 304
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=39.85 E-value=3e+02 Score=25.99 Aligned_cols=59 Identities=19% Similarity=0.088 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHhcCCchhh-HHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Q 001255 898 TSKHGALQQLIKASVANDHSIW-TKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ 956 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~~~~-~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~ 956 (1113)
+.|..||+.|.-=+..+-...- -.+-..++..|++|++.......+.+|.+|..+++.-
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~ 61 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP 61 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc
Confidence 4688899887765544421110 1135678888999999887778888999999988754
No 305
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=39.84 E-value=7.7e+02 Score=29.95 Aligned_cols=130 Identities=14% Similarity=0.166 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHH--Hh-
Q 001255 899 SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLH--VT- 975 (1113)
Q Consensus 899 ~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~--~~- 975 (1113)
+=...|.-+..++..+.. +.+.|..++..|.....-. .....+-++++.|++ ....+.+-..|..+|. .-
T Consensus 193 di~~~L~vldaii~y~~i--P~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~---S~~g~~~i~~L~~iL~~~~~~ 265 (464)
T PF11864_consen 193 DIEACLSVLDAIITYGDI--PSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLK---SHLGHSAIRTLCDILRSPDPQ 265 (464)
T ss_pred HHHHHHHHHHHHHHcCcC--ChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHc---CccHHHHHHHHHHHHcccCcc
Confidence 334556555556665553 3578888888887775433 556678889999986 3333444445555551 11
Q ss_pred CCChHHHHHHHHHHHHHHHhhc----------ChhhHHHHhhhhhccCChhHHHHHHHHHHHHH-HhhCHH
Q 001255 976 KDAVPKVSNEAEHCLTVVLSQY----------DPFRCLSVIVPLLVTEDEKTLVTCINCLTKLV-GRLSQE 1035 (1113)
Q Consensus 976 ~Ds~~~Vr~aa~~~l~~l~~~~----------~p~~~l~~l~~~l~s~~~~~~~~al~~L~~li-e~~~~~ 1035 (1113)
......+.+.|...+..++-.. .+.-+++.+...++.++.....+.+.++..++ ..++..
T Consensus 266 ~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~ 336 (464)
T PF11864_consen 266 NKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRE 336 (464)
T ss_pred ccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhh
Confidence 1223445556666666544332 12236666666676666666667777888888 666544
No 306
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.67 E-value=1.1e+03 Score=32.55 Aligned_cols=108 Identities=18% Similarity=0.256 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhh----cCh--h--hHHHHhhhhhcc------CChhHHH-------HHH
Q 001255 964 VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ----YDP--F--RCLSVIVPLLVT------EDEKTLV-------TCI 1022 (1113)
Q Consensus 964 ~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~----~~p--~--~~l~~l~~~l~s------~~~~~~~-------~al 1022 (1113)
.-+++-.|.+++.|+..+||..|-+.+-.++.. +++ + -|..|++|.+.+ ++|.... .+.
T Consensus 995 wi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ 1074 (1610)
T KOG1848|consen 995 WIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSC 1074 (1610)
T ss_pred HHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhh
Confidence 345667777899999999999999999777744 334 2 388899999973 2332111 111
Q ss_pred ---HHHHHHHHhhCH-----HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1023 ---NCLTKLVGRLSQ-----EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1023 ---~~L~~lie~~~~-----~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
.-+.++...+=+ ..+......++.-+.+...|..+++.-+|++|+-++-
T Consensus 1075 ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1075 LTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred hhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 112222211111 1122334566677888889999999999999987764
No 307
>PF07778 CENP-I: Mis6 ; InterPro: IPR012485 Centromere protein Cenp-I (also known as Mis6) is an essential centromere connector protein acting during G1-S phase of the cell cycle. Mis6 is thought to be required for recruiting Cenp-A, the centromere- specific histone H3 variant; an important event for centromere function and chromosome segregation during mitosis [, ].
Probab=39.11 E-value=1.9e+02 Score=35.53 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHH-hcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHH
Q 001255 547 AQAALSTLADIIPSCRKPFESYMERILPHVFSR-LIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKL 625 (1113)
Q Consensus 547 ~~~~L~~l~~l~~~~~~~~~~~l~~ll~~ll~k-lgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~ 625 (1113)
+...+++|..++...| --.+.+..++.-++.. +++ .+.....++| .=.+.++.+.++.++........++..++
T Consensus 80 ~~~~i~~l~s~A~~~G-L~~~~l~~Ll~~~~s~~l~~---~~~~~lik~L-iP~~~v~~~~v~~ivs~Lg~~k~s~~~Q~ 154 (511)
T PF07778_consen 80 LKSTIKTLESLAYENG-LSPEALDRLLDLILSPKLDQ---ATNTRLIKCL-IPAERVSEDVVVRIVSWLGVGKPSPSTQA 154 (511)
T ss_pred HHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcCCcch---HHHHHHHHhc-CcCCcCCHHHHHHHHHhcCCCCCCHHHHH
Confidence 3455666666666654 2234444444433321 221 2223333444 11345677777777765555545889999
Q ss_pred HHHHHHHHHHhhhccCCCC---------C--CChhhHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhcChh
Q 001255 626 AVIEFAISSLNKHAMNSEG---------S--GNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDST 687 (1113)
Q Consensus 626 ~~L~~l~~~l~~~~~~~~~---------~--~~~~~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~~~~ 687 (1113)
.+|+||...+. + ++... | -....++.++-+++.+++. ..+||.-=+..|..|++-+|.+
T Consensus 155 ~llrWLi~v~~-~-id~~~~L~~~Y~vlF~~L~~~~lrp~~chLL~llTr-r~~VkpfRi~~Ll~L~~k~g~~ 224 (511)
T PF07778_consen 155 LLLRWLIAVYD-F-IDDKDVLSKLYGVLFNLLDYESLRPYLCHLLYLLTR-REHVKPFRIQKLLDLQNKFGMD 224 (511)
T ss_pred HHHHHHHHHHH-H-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCchHHHHHHHHHHhccCCC
Confidence 99999986554 2 11111 0 0112345555555555433 2335666666666666655554
No 308
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=39.05 E-value=5.1e+02 Score=30.35 Aligned_cols=131 Identities=19% Similarity=0.262 Sum_probs=84.3
Q ss_pred CCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchH--------------HHHHHHHHHHHHHHh
Q 001255 495 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHK--------------VAQAALSTLADIIPS 560 (1113)
Q Consensus 495 ~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~k--------------V~~~~L~~l~~l~~~ 560 (1113)
-...||+.=.--|..|-..|+...- .. ...+..|+..|.+++.|.+.. +....+.+|+.|+..
T Consensus 151 ~~e~dWeV~s~VL~hLp~qL~Nk~L-f~--~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~Ls~LisY 227 (356)
T PF03542_consen 151 EHETDWEVYSYVLVHLPSQLSNKAL-FL--GADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVLSALISY 227 (356)
T ss_pred hcCCCcHHHHHHHHHHHHHhhhhHH-hc--cCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3689999988888888888876331 11 123677777777776554321 667788999999988
Q ss_pred hCcch-HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhcc--C--CCHHHHHHHHHHHHH
Q 001255 561 CRKPF-ESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDE--Q--RSPKAKLAVIEFAIS 633 (1113)
Q Consensus 561 ~~~~~-~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~--~--knpkvk~~~L~~l~~ 633 (1113)
|. .| +..-+.++..+..-++. | +-..+..+|+...-.+| +.+...|-.++.. + -++.+=+.+||||..
T Consensus 228 h~-~~~k~~qd~iV~~l~~GL~s-~--~a~~CI~aLtic~~EmP-~s~~k~L~~iL~kLs~i~tt~~~Ai~ILEFLs~ 300 (356)
T PF03542_consen 228 HS-HFSKQEQDEIVRALESGLGS-K--TAKPCIHALTICCYEMP-DSMKKLLPSILLKLSKISTTPNMAIHILEFLSS 300 (356)
T ss_pred HH-hcCHhHHHHHHHHHHHHhcc-C--cHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Confidence 75 44 45555666666666664 3 33457777777765554 3333333333321 1 367888889999974
No 309
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=38.89 E-value=2.8e+02 Score=29.32 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh----hHHHHhhhhhcc-----CChhHHHHHHHHHHHHHHhh
Q 001255 962 DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF----RCLSVIVPLLVT-----EDEKTLVTCINCLTKLVGRL 1032 (1113)
Q Consensus 962 ~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~----~~l~~l~~~l~s-----~~~~~~~~al~~L~~lie~~ 1032 (1113)
.++..++..|+....++-+.||..|-.|+..+.....+. .-.+.|..++.. -+|..-..++..+..|+
T Consensus 3 ~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL--- 79 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLL--- 79 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHh---
Confidence 356678888888889999999999999999888333121 012223333321 12544444555444443
Q ss_pred CHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001255 1033 SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1073 (1113)
Q Consensus 1033 ~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~ 1073 (1113)
..+. .-..++-+++-..+.-..++.++|..+|+.++.-
T Consensus 80 ~~~~---y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~ 117 (193)
T PF12612_consen 80 DLPE---YRYSLLSGLVVSAGGLTESLVRASSAALLSYLRE 117 (193)
T ss_pred ccHH---HHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 2222 3455778889899998889999999999888863
No 310
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=38.69 E-value=4.6e+02 Score=27.05 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhhhhH
Q 001255 1060 RKTVVFCLVDIYIMLGKAFL 1079 (1113)
Q Consensus 1060 RkaAv~clv~i~~~lGe~i~ 1079 (1113)
-...+.|+..+...+|..+.
T Consensus 144 ~~~~ie~~~~lL~~~G~~l~ 163 (209)
T PF02854_consen 144 DEENIECLCTLLKTCGKKLE 163 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHh
Confidence 34567788888888887666
No 311
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=38.25 E-value=3.9e+02 Score=26.07 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCCh-
Q 001255 902 GALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAV- 979 (1113)
Q Consensus 902 ~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D-~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~- 979 (1113)
+.+..+...+..+... ...+-.+|..+-+-+.| .+..+...--..+...+.. . .+.+-.++..+++...+..
T Consensus 26 ~~l~~l~~~~~~~~~~--~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~---~-~~~i~~~l~~~l~~~~~~~~ 99 (148)
T PF08389_consen 26 DFLEDLLQLLQSSPQH--LELVLRILRILPEEITDFRRSSLSQERRRELKDALRS---N-SPDILEILSQILSQSSSEAN 99 (148)
T ss_dssp THHHHHHHHHHTTHHH--HHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHCHCCH
T ss_pred hHHHHHHHHhccchhH--HHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH---H-HHHHHHHHHHHHHhhccccH
Confidence 3666666666654211 12355556666666655 1111111111222222221 1 2333445555555555443
Q ss_pred HHHHHHHHHHHHHHHhhcChhh-----HHHHhhhhhccCChhHHHHHHHHH
Q 001255 980 PKVSNEAEHCLTVVLSQYDPFR-----CLSVIVPLLVTEDEKTLVTCINCL 1025 (1113)
Q Consensus 980 ~~Vr~aa~~~l~~l~~~~~p~~-----~l~~l~~~l~s~~~~~~~~al~~L 1025 (1113)
..+...+..|+..|+.-.++.. +++.+...+...+. ...|+++|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 8999999999999999877753 56666666643333 44455543
No 312
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=38.19 E-value=3.6e+02 Score=30.10 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=16.0
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 001255 976 KDAVPKVSNEAEHCLTVVL 994 (1113)
Q Consensus 976 ~Ds~~~Vr~aa~~~l~~l~ 994 (1113)
.|+.++|++.++.|++.+-
T Consensus 110 ~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 110 KDPCKEVRETCELAIKRLE 128 (289)
T ss_pred cCCccccchHHHHHHHHHH
Confidence 6999999999988887543
No 313
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=37.98 E-value=3.7e+02 Score=27.06 Aligned_cols=106 Identities=11% Similarity=0.052 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhHHHHHHHHhhhCCC-cccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCch-hhhh
Q 001255 63 AEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA-VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAP-EIQR 140 (1113)
Q Consensus 63 a~~~lp~Ll~~~~~t~kvi~~sa~~ai~~ii~~~~~-~r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~-~~~~ 140 (1113)
+..-+..+|+.+.-+..-+ +.|..+.++|-.. ..+++.|++.+ .+-+-..|.-..-|++.+.+...... ....
T Consensus 6 ~r~~F~~~L~~L~aS~qSi----~kaa~fAlk~~~~~edL~~cIle~l-e~~~lN~R~nI~~fID~l~e~~~~~~~~~~~ 80 (139)
T PF12243_consen 6 VRMQFTQLLRRLNASQQSI----QKAAQFALKNRDMEEDLWSCILEQL-EKENLNTRINIFYFIDSLCESSQKSKKYNYP 80 (139)
T ss_pred HHHHHHHHHHHcchhHHHH----HHHHHHHHHccccHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHhcccccch
Confidence 4555666777777666555 5555566667555 48999999998 45588888888888888766553321 1222
Q ss_pred cHH----HHHHHHHHHhcCCCh--HHHHHHHHHHHHHHh
Q 001255 141 SAD----LYEDLIRCCVADAMS--EVRSTARMCYRMFAK 173 (1113)
Q Consensus 141 ~~~----~l~~~i~k~l~Da~~--eVR~~AR~a~~~~~~ 173 (1113)
+.. .|.++|-.-+-+.+. .=+..+++.+..+.+
T Consensus 81 Yv~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~ 119 (139)
T PF12243_consen 81 YVSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSK 119 (139)
T ss_pred hHHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHHH
Confidence 333 333444344444444 345556666555544
No 314
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.30 E-value=4.9e+02 Score=30.09 Aligned_cols=141 Identities=19% Similarity=0.230 Sum_probs=72.3
Q ss_pred HHHHHHHhcCCCHH-HH---HHHHHHHHHHHHhch---hhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh
Q 001255 927 LTAVLEVLDDADSS-VR---EVALSLINEMLKNQK---DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP 999 (1113)
Q Consensus 927 l~~Ll~~L~D~n~~-vr---~~aL~~L~~L~~~~~---~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p 999 (1113)
++.|+.++.|+|-. .| ..+|.+|+.|+.+-. .-++.-....|-.++..+.|+ +.|.+.+..|+..++-.. |
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~-p~Vi~~~~a~i~~l~LR~-p 362 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDD-PLVIQEVMAIISILCLRS-P 362 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhcC-c
Confidence 44577777776533 44 467888888876422 113333333444455556665 678888888888777553 3
Q ss_pred hhHHHHh--------hhhhccC--ChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001255 1000 FRCLSVI--------VPLLVTE--DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVD 1069 (1113)
Q Consensus 1000 ~~~l~~l--------~~~l~s~--~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~ 1069 (1113)
+.--.++ .+.|+.- ....-.-+..++..++-+ +.+.....|.-=+..|+..-.-...++|.+|-.+|-.
T Consensus 363 dhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRD 441 (461)
T KOG4199|consen 363 DHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILLANGIEKLIRTAKANHETCEAAAKAALRD 441 (461)
T ss_pred chHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHh
Confidence 3211111 1222110 001111233456666633 3343333344334455554445566688887777655
Q ss_pred H
Q 001255 1070 I 1070 (1113)
Q Consensus 1070 i 1070 (1113)
+
T Consensus 442 L 442 (461)
T KOG4199|consen 442 L 442 (461)
T ss_pred c
Confidence 4
No 315
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.43 E-value=1e+03 Score=30.49 Aligned_cols=155 Identities=14% Similarity=0.242 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch-hhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh--
Q 001255 923 FNQILTAVLEVLDDADSSVREVALSLINEMLKNQK-DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP-- 999 (1113)
Q Consensus 923 f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~-~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p-- 999 (1113)
|.++.--++..|...+-.||..+|.+.-.|...-. ..+-.++.-=+.+.-+.-.|....-|+....++.+.+-.+|-
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a 394 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA 394 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH
Confidence 44555556677777788899988888777776321 112222222222222221244455688888888877777664
Q ss_pred hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhhh--
Q 001255 1000 FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG-NQSADVRKTVVFCLVDIYIMLGK-- 1076 (1113)
Q Consensus 1000 ~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~-D~~seVRkaAv~clv~i~~~lGe-- 1076 (1113)
..++++++.+|.+.+...-...+.++...+|.++. +. ..++..+...+. =+.+.+=..|...+-++|...+|
T Consensus 395 atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~--Lr---~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~ 469 (948)
T KOG1058|consen 395 ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN--LR---ASIIEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQ 469 (948)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch--HH---HHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHH
Confidence 35888888888777666555567777788877762 11 112223333332 25555666666666666666664
Q ss_pred hhHhhh
Q 001255 1077 AFLPYL 1082 (1113)
Q Consensus 1077 ~i~p~l 1082 (1113)
.+|+.+
T Consensus 470 ~~~k~i 475 (948)
T KOG1058|consen 470 SVIKII 475 (948)
T ss_pred HHHHHH
Confidence 455544
No 316
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.34 E-value=1.2e+03 Score=30.98 Aligned_cols=126 Identities=18% Similarity=0.298 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhc-hh------h--h-hhHH
Q 001255 897 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA--DSSVREVALSLINEMLKNQ-KD------V--M-EDSV 964 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~--n~~vr~~aL~~L~~L~~~~-~~------~--~-~~~~ 964 (1113)
+++|++|=+.|.++=+.-++ +..|+.++.|. .-.||+.|..++..+.... .. . + +.--
T Consensus 18 ~~~R~~AE~~L~q~~K~pgF----------v~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk 87 (1010)
T KOG1991|consen 18 AKERKAAEQQLNQLEKQPGF----------VSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDK 87 (1010)
T ss_pred hHHHHHHHHHHHHhhcCCcH----------HHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHH
Confidence 47899998887655444333 33455555454 4558999999999887743 11 1 1 1112
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcCh---hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhh
Q 001255 965 EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP---FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRL 1032 (1113)
Q Consensus 965 ~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p---~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~ 1032 (1113)
..+-..||+.+-.....+|..-.+|++.|..+=-| ..+++.+...+++.+.-...++|-||..|+..+
T Consensus 88 ~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~y 158 (1010)
T KOG1991|consen 88 AVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTY 158 (1010)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHH
Confidence 23444455555444678999999999999877444 458888888898877555567777777777544
No 317
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=35.75 E-value=4.8e+02 Score=38.10 Aligned_cols=202 Identities=16% Similarity=0.193 Sum_probs=113.1
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCc-----hhhHHhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDH-----SIWTKYFNQILTAVLEV-LDDADSSVREVALSLINEMLKN 955 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~-----~~~~~~f~~ll~~Ll~~-L~D~n~~vr~~aL~~L~~L~~~ 955 (1113)
+..++...-++.+ .+-|+.+...+..++..... ..-.+.|..++..++.+ +.|.++.+|.+.+..+.
T Consensus 482 ~~~~~~~~~~~~~--~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~----- 554 (2341)
T KOG0891|consen 482 VQQCVDSYLEADD--SEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN----- 554 (2341)
T ss_pred HHHHHHHHHhccc--HHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-----
Confidence 3444555444443 36788886665555533211 00113477777776653 36777778877666555
Q ss_pred chhhhhhHH-H-HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhh-hc-------cCChhHHHHHHHHH
Q 001255 956 QKDVMEDSV-E-IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPL-LV-------TEDEKTLVTCINCL 1025 (1113)
Q Consensus 956 ~~~~~~~~~-~-~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~-l~-------s~~~~~~~~al~~L 1025 (1113)
.+|.+.+ . ..+-.++.++-|..-.++.++...+..++.. +|..+++.+.-. +. +...++...|-+++
T Consensus 555 --~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~-~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~ 631 (2341)
T KOG0891|consen 555 --ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSY-NPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLL 631 (2341)
T ss_pred --cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccc-cHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHh
Confidence 1222211 0 1122244556677777777777777655543 343333332111 11 22223444444444
Q ss_pred HHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcCChhhHhhHH
Q 001255 1026 TKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVT 1094 (1113)
Q Consensus 1026 ~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L~~s~~kLl~ 1094 (1113)
..++.... .-+.+....++-.+..-+.|.++.|-+++++|+..+|.+.|+++.+++..+-+.-.+.|.
T Consensus 632 ~~~i~~~~-~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~ 699 (2341)
T KOG0891|consen 632 CELIISSP-VLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQ 699 (2341)
T ss_pred hHHHHHHH-HHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHH
Confidence 44442221 222233444445677777899999999999999999999998888777766655555554
No 318
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=35.26 E-value=2.1e+02 Score=32.96 Aligned_cols=74 Identities=22% Similarity=0.264 Sum_probs=49.5
Q ss_pred HhHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhchhhhhhH--HHHHHHHHHHHhC-------CChHHHHHHHHHH
Q 001255 921 KYFNQILTAVLEVLDDADS--SVREVALSLINEMLKNQKDVMEDS--VEIVIEKLLHVTK-------DAVPKVSNEAEHC 989 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L~D~n~--~vr~~aL~~L~~L~~~~~~~~~~~--~~~~l~~ll~~~~-------Ds~~~Vr~aa~~~ 989 (1113)
..|.+|+..|-+++.|+.. ..+-.||.+|.+|+++-..+|-.. -.+.+-.+|.-+. |....||+.|++.
T Consensus 53 ~e~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l 132 (336)
T KOG2056|consen 53 VEYQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKEL 132 (336)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHH
Confidence 3488899999999988644 466789999999999654444322 1123334443332 6677788888877
Q ss_pred HHHHH
Q 001255 990 LTVVL 994 (1113)
Q Consensus 990 l~~l~ 994 (1113)
+..|-
T Consensus 133 ~~LL~ 137 (336)
T KOG2056|consen 133 LSLLE 137 (336)
T ss_pred HHHhc
Confidence 76543
No 319
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=35.12 E-value=2e+02 Score=27.56 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh-hhhHHHHHHHH---HHH-HhCCChHHHHHHHHHHHHHHHh--h
Q 001255 924 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV-MEDSVEIVIEK---LLH-VTKDAVPKVSNEAEHCLTVVLS--Q 996 (1113)
Q Consensus 924 ~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~-~~~~~~~~l~~---ll~-~~~Ds~~~Vr~aa~~~l~~l~~--~ 996 (1113)
..+...+.+.+....+.-+...|-++..++++-... ...|...+.|. ++. .+....+.++......++.|-+ .
T Consensus 31 ~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~~~i 110 (121)
T smart00582 31 KEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKKIRRLLNIWEERGI 110 (121)
T ss_pred HHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCC
Confidence 445566666665554455556788899999876433 12233333333 222 2222236799999999999997 6
Q ss_pred cChhh
Q 001255 997 YDPFR 1001 (1113)
Q Consensus 997 ~~p~~ 1001 (1113)
++++.
T Consensus 111 F~~~~ 115 (121)
T smart00582 111 FPPSV 115 (121)
T ss_pred CCHHH
Confidence 77753
No 320
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=34.88 E-value=4.9e+02 Score=26.21 Aligned_cols=107 Identities=13% Similarity=0.203 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHhhhccCCC--CCCC
Q 001255 570 ERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSE--GSGN 647 (1113)
Q Consensus 570 ~~ll~~ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~~~~~~~~--~~~~ 647 (1113)
..-+..+|.+|.-++++++.++.-||.. .--.|.+++.|+.-+.+. +-..|+-++-|+ +.|.+...... +...
T Consensus 7 r~~F~~~L~~L~aS~qSi~kaa~fAlk~---~~~~edL~~cIle~le~~-~lN~R~nI~~fI-D~l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 7 RMQFTQLLRRLNASQQSIQKAAQFALKN---RDMEEDLWSCILEQLEKE-NLNTRINIFYFI-DSLCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHc---cccHHHHHHHHHHHHhcc-chhhHHHHHHHH-HHHHHHHHhcccccchh
Confidence 4456788999998899999999998886 333456778887777654 666788777766 44655433222 1112
Q ss_pred hhhHHHHHHhHccccCC-CCH--HHHHHHHHHHHHHH
Q 001255 648 LGILKLWLAKLTPLVHD-KNT--KLKEAAITCIISVY 681 (1113)
Q Consensus 648 ~~~~~~~l~~l~~~~~d-~n~--~VR~aA~~~L~~l~ 681 (1113)
-..++..+++|+.+... .|. .-++.+.++|..+-
T Consensus 82 v~~l~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~ 118 (139)
T PF12243_consen 82 VSMLQRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWS 118 (139)
T ss_pred HHHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHH
Confidence 25577888888888644 333 44556666666554
No 321
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=34.52 E-value=2.9e+02 Score=26.06 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHh
Q 001255 502 ARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPS 560 (1113)
Q Consensus 502 eR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~ 560 (1113)
.|.-||+.|..-+.-+--...++. +-..+...|.+||+.+..-.-..+|+.+..++..
T Consensus 3 IR~RAL~~I~~Kl~~~Li~~~dl~-~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~ 60 (98)
T PF14726_consen 3 IRVRALESIEFKLEHGLISEEDLV-KERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS 60 (98)
T ss_pred HHHHHHHHHHHHHHhccccHHHHc-cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC
Confidence 578888888876665422222221 2345777888999988887888888888887664
No 322
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=33.82 E-value=5.6e+02 Score=32.14 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=75.4
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCch--hhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch--
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHS--IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK-- 957 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~--~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~-- 957 (1113)
+..+++.+.+..- -....+|-.|-+++-+-+.- .+- -...++.|...+.|.++++|..++.+|+.+.-.-.
T Consensus 421 ~~plvqll~dp~~---~i~~~~lgai~NlVmefs~~kskfl--~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~ 495 (678)
T KOG1293|consen 421 AQPLVQLLMDPEI---MIMGITLGAICNLVMEFSNLKSKFL--RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEE 495 (678)
T ss_pred HHHHHHHhhCcch---hHHHHHHHHHHHHHhhcccHHHHHH--HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHH
Confidence 3445555544432 35566676777766554311 111 12235567777889999999999999999776443
Q ss_pred hhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhh
Q 001255 958 DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ 996 (1113)
Q Consensus 958 ~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~ 996 (1113)
..+..+.......|++.+.|+...|.+.+-+.++.+...
T Consensus 496 ~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 496 EKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 235667777888888899999999999999999887643
No 323
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=33.07 E-value=5.4e+02 Score=26.16 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001255 1044 FLPALFEAFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1044 lip~l~~~l~D~~seVRkaAv~clv~i~ 1071 (1113)
.=|.|.+++.-+++.||..|...++.+|
T Consensus 120 ~~PiL~r~L~~~n~~Vr~na~~l~~~aF 147 (152)
T PF12422_consen 120 YEPILWRALQAANAKVRSNAAALFLDAF 147 (152)
T ss_pred HHHHHHHHHcCCCcchhccHHHHHHHHc
Confidence 4578999999999999999999888765
No 324
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=32.72 E-value=9.4e+02 Score=28.85 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHH-HHHHHHHHHHhC-----CChHHHHHHHHHHHHHHH
Q 001255 925 QILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSV-EIVIEKLLHVTK-----DAVPKVSNEAEHCLTVVL 994 (1113)
Q Consensus 925 ~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~-~~~l~~ll~~~~-----Ds~~~Vr~aa~~~l~~l~ 994 (1113)
+++.-+..|+...|++....+.-.|+.+++.-... .+++ ..++.++++++. |..-.+..|+..|++.++
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 36777889998888998888888888888754332 2222 245666665552 555677889999998765
No 325
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=32.44 E-value=97 Score=36.60 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhChHHHHHHHhcCCHHHH
Q 001255 115 AVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQ 191 (1113)
Q Consensus 115 ~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~~~~p~~a~~ll~~Ld~~~~ 191 (1113)
...|..+..||.-++..|... +.++-+..+.+.|.+.-..++-++|..++.++..+...--+.++.+|+=+|.-.+
T Consensus 21 ~l~R~~~ik~L~e~~~~~~~~-er~~~i~~i~e~iq~q~l~s~~~~r~~~~~avq~~~~sg~~~~e~~F~vidAf~~ 96 (525)
T KOG3818|consen 21 HLWRSEAIKLLVELALDWKKE-ERKKWINKIIELIQKQKLNSPHEEREAIEAAVQECSSSGTQDAEKYFNVIDAFSL 96 (525)
T ss_pred HHHHHhHHHHHHHHHhhhHHH-HhhhhHHHHHHHHHhhccCCchhhHHHHHHHHHHhhhcccccHHHHHhhcchhcC
Confidence 468889999999999999875 6777888899999999999999999999999999999988889999987776443
No 326
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=32.16 E-value=5.8e+02 Score=26.23 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh--hHHHHhhhhhccCChhHHHHH
Q 001255 944 VALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--RCLSVIVPLLVTEDEKTLVTC 1021 (1113)
Q Consensus 944 ~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~--~~l~~l~~~l~s~~~~~~~~a 1021 (1113)
.+..+|.++++....--..-++.++..++.....+. .--.+|+..++..++.. .+..-|.+++..=.+-..-.+
T Consensus 37 LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~----~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a 112 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPS----SQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVA 112 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS------HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccch----hHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 677888888875443222335555555555544432 23458888888776653 233334444331111001112
Q ss_pred HHHHHHHHH--hhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001255 1022 INCLTKLVG--RLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1068 (1113)
Q Consensus 1022 l~~L~~lie--~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv 1068 (1113)
..++..+.- +.. ..+ -..++-.+-++|-.++.++|+.|+.-+.
T Consensus 113 ~~ll~Al~PLi~~s-~~l---rd~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 113 IGLLRALLPLIKFS-PSL---RDSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp HHHHHHHHHHHTT--HHH---HHHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-HHH---HHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 333332221 112 222 2445668999999999999999998553
No 327
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.82 E-value=5.4e+02 Score=35.61 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=60.0
Q ss_pred CCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhh-----ccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHH
Q 001255 976 KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLL-----VTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFE 1050 (1113)
Q Consensus 976 ~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l-----~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~ 1050 (1113)
+|. +.-...+..|-..+...+.-..+.+.+...+ .+..|..+...++++..++=...---.+.+..+|-..+..
T Consensus 1498 ~~~-d~a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s 1576 (1710)
T KOG1851|consen 1498 RDV-DLAKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLES 1576 (1710)
T ss_pred ccc-hHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 344 3344555556655555544333333332222 2568899988899988766222111233455677778899
Q ss_pred HhcCCCHHHHHHHHHHHHHHH
Q 001255 1051 AFGNQSADVRKTVVFCLVDIY 1071 (1113)
Q Consensus 1051 ~l~D~~seVRkaAv~clv~i~ 1071 (1113)
.+.|.+-+||+-|..|+..+.
T Consensus 1577 ~l~D~~i~vre~Aa~~Lsgl~ 1597 (1710)
T KOG1851|consen 1577 LLNDDQIEVREEAAKCLSGLL 1597 (1710)
T ss_pred HHcchHHHHHHHHHHHHHHHH
Confidence 999999999999999998775
No 328
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=31.42 E-value=3.6e+02 Score=26.45 Aligned_cols=94 Identities=16% Similarity=0.251 Sum_probs=62.5
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCc--chHHHHHHHHHHHHHHHhhCcchHHHHHHHHH
Q 001255 497 SSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDP--HHKVAQAALSTLADIIPSCRKPFESYMERILP 574 (1113)
Q Consensus 497 s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Ds--n~kV~~~~L~~l~~l~~~~~~~~~~~l~~ll~ 574 (1113)
+.+|--=-.-|..|...-.+. ..+.++++.|-++|.|. |++.+-.+|.+|.+|+....+.+-.|+..-+.
T Consensus 12 ~d~wGp~~~~m~eIa~~t~~~--------~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~ 83 (123)
T cd03571 12 NDPWGPSGTLMAEIARATYNY--------VEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLY 83 (123)
T ss_pred CCCCCCCHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHH
Confidence 344555555555555432221 36788999999999987 88999999999999999877777666655442
Q ss_pred HHHHHh-----cC-----CchhhHHHHHHHHHHHH
Q 001255 575 HVFSRL-----ID-----PKELVRQPCSTTLDIVS 599 (1113)
Q Consensus 575 ~ll~kl-----gD-----~K~~vr~~a~~~L~~i~ 599 (1113)
. ++.| .| .=-.||.+|.+.++.+.
T Consensus 84 ~-i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~Ll~ 117 (123)
T cd03571 84 I-IRTLKDFQYIDENGKDQGINVREKAKEILELLE 117 (123)
T ss_pred H-HHhhccceeeCCCCCchhHHHHHHHHHHHHHhC
Confidence 2 2222 12 22457888877776553
No 329
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=30.52 E-value=1.1e+03 Score=33.16 Aligned_cols=151 Identities=16% Similarity=0.187 Sum_probs=93.2
Q ss_pred hhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhh
Q 001255 918 IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS-VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ 996 (1113)
Q Consensus 918 ~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~-~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~ 996 (1113)
+...+|..++...-..|..++..|+.-+..+...++... +.| -.-++..|+.-++.....=+.+|...+..++..
T Consensus 428 vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f----ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~ 503 (1426)
T PF14631_consen 428 VLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF----DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK 503 (1426)
T ss_dssp HHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc----cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 345667777777777778889999999999999999855 343 334677777665544443446778888777765
Q ss_pred cChhhH------HHHhhhhhccCChhHHHHHHHHHHHHHHhhCH--HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001255 997 YDPFRC------LSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ--EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1068 (1113)
Q Consensus 997 ~~p~~~------l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~--~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv 1068 (1113)
++..+ |.-+++.+..=..+.....+.+|..+.-.-+. ..+. .++.=.+-+++...+...++-.+-..|
T Consensus 504 -~~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~---del~ivIRKQLss~~~~~K~~GIIGav 579 (1426)
T PF14631_consen 504 -NPSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQ---DELHIVIRKQLSSSNPKYKRIGIIGAV 579 (1426)
T ss_dssp --HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHH---HHHHHHHHHHHT-SSHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhH---HHHHHHHHHhhcCCcHHHHHHhHHHHH
Confidence 44433 33333334332233333446666665521121 1222 233335889999999999999999888
Q ss_pred HHHHHhhh
Q 001255 1069 DIYIMLGK 1076 (1113)
Q Consensus 1069 ~i~~~lGe 1076 (1113)
.+..+++.
T Consensus 580 ~~i~~la~ 587 (1426)
T PF14631_consen 580 MMIKHLAA 587 (1426)
T ss_dssp HHHHHTT-
T ss_pred HHHHHHHH
Confidence 88888884
No 330
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=30.29 E-value=97 Score=23.58 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 001255 967 VIEKLLHVTKDAVPKVSNEAEHCLTVVL 994 (1113)
Q Consensus 967 ~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~ 994 (1113)
.+|.|++.+.+....|++.|-.|+..++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999998775
No 331
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=30.10 E-value=7.5e+02 Score=30.82 Aligned_cols=162 Identities=10% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhh--hhh
Q 001255 885 ILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV--MED 962 (1113)
Q Consensus 885 lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~--~~~ 962 (1113)
+++.+-|..+ .-|..++..|..-+.--.......+|-+-..|++ .|.+.+||.+.+.+|..|+..-+.. +.+
T Consensus 280 fvsRy~Dv~d---~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~L---SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~ 353 (740)
T COG5537 280 FVSRYIDVDD---VIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSL---SDNHEGVRLLVSKILLFLCSRIPHTDAIRR 353 (740)
T ss_pred HhhhccchhH---HHHHHHHHHHHHHHhcchHHHHhhhccccccccc---ccchHHHHHHHHHHHHHHHhcCCcchHHHH
Q ss_pred HHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhhcChhh-HHHHhhhhhccCChh---HHHHHHHHHHHHHHhhCHHHH
Q 001255 963 SVEIVIEKLLH-VTKDAVPKVSNEAEHCLTVVLSQYDPFR-CLSVIVPLLVTEDEK---TLVTCINCLTKLVGRLSQEEL 1037 (1113)
Q Consensus 963 ~~~~~l~~ll~-~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~-~l~~l~~~l~s~~~~---~~~~al~~L~~lie~~~~~~l 1037 (1113)
|.+.+-..||+ +..|..- ||-.+...+..+-...-.+. ++.++.-.|-..+.+ ...+++..+.++....=.+..
T Consensus 354 f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevikEKi 432 (740)
T COG5537 354 FVERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVIKEKI 432 (740)
T ss_pred HHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred Hhhh--hhHHHHHHHHhc
Q 001255 1038 MAQL--PSFLPALFEAFG 1053 (1113)
Q Consensus 1038 ~~~L--~~lip~l~~~l~ 1053 (1113)
.... ..++|...++..
T Consensus 433 pl~~k~n~lL~a~~qgse 450 (740)
T COG5537 433 PLATKTNRLLEAMKQGSE 450 (740)
T ss_pred chhhhhhhHHHHHHhhhh
No 332
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=30.06 E-value=1.3e+02 Score=28.23 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhChHHHHHHHhcCCHH
Q 001255 119 ARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPA 189 (1113)
Q Consensus 119 ~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~~~~p~~a~~ll~~Ld~~ 189 (1113)
+..-.|+.-+|.+-+.+++-...-+.|-++|+.....=++.=+..+++.+..+.+..|+.=..|+...||.
T Consensus 18 rl~~~y~~ClldkgpCt~~~~~lK~~ipeal~t~C~KCt~kQK~~~~kv~~~l~~~~P~~w~~l~~KyDp~ 88 (95)
T PF03392_consen 18 RLLKSYIDCLLDKGPCTPEGKELKKVIPEALKTNCAKCTPKQKENARKVIKFLKKNYPDEWEELVKKYDPE 88 (95)
T ss_dssp HHHHHHHHHHTSSSTSHHHHHHHHHHHHHHHHCTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHCCC
Confidence 34457777788888887656667778889999999999999999999999999999999999999988874
No 333
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=29.17 E-value=9.3e+02 Score=27.71 Aligned_cols=131 Identities=14% Similarity=0.110 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHHHHhchhhhhhHHH-HHHHHHHHHh-CCChHHHHHHHHHHHHHHHhhc------ChhhHHHHhhhh
Q 001255 938 DSSVREVALSLINEMLKNQKDVMEDSVE-IVIEKLLHVT-KDAVPKVSNEAEHCLTVVLSQY------DPFRCLSVIVPL 1009 (1113)
Q Consensus 938 n~~vr~~aL~~L~~L~~~~~~~~~~~~~-~~l~~ll~~~-~Ds~~~Vr~aa~~~l~~l~~~~------~p~~~l~~l~~~ 1009 (1113)
|..+|-+.+.++-+|+.-.+......-. .++..+..-+ |-...-|+..+.+....++..- +-+-++..|+.+
T Consensus 184 ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnI 263 (524)
T KOG4413|consen 184 NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNI 263 (524)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHH
Confidence 5567888889998888765544433333 3343333333 3233345555555555555332 223478888888
Q ss_pred hccC-Ch-----hHHHHHHHHHHHHH-HhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001255 1010 LVTE-DE-----KTLVTCINCLTKLV-GRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1068 (1113)
Q Consensus 1010 l~s~-~~-----~~~~~al~~L~~li-e~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv 1068 (1113)
|... .. +....-.+++++.. -....+..-..++..+.+..+-++-.|++.-.+|+.++-
T Consensus 264 IsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalG 329 (524)
T KOG4413|consen 264 ISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALG 329 (524)
T ss_pred hhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHH
Confidence 8532 11 22233334444332 122344455678889999999999999999999998764
No 334
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=29.12 E-value=6.2e+02 Score=25.69 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=65.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHhhhCCCcccHHHHHHHhhhcC
Q 001255 35 DRRSSIVKQACHLLCFLSKELLG-DFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDR 113 (1113)
Q Consensus 35 dlRS~vv~~Ac~~l~~La~~L~~-~f~~~a~~~lp~Ll~~~~~t~kvi~~sa~~ai~~ii~~~~~~r~l~~i~~~~~~~K 113 (1113)
.+...++++-+.+|.......++ -.+.|.|++.-+.-+..++ ...+-=..+|..++.+.... +.. -=
T Consensus 25 ~~~~~~~~~~~~~i~~~~~~~~~~~le~y~ei~~~aWk~a~~~---~~~~~e~~~iq~~~~~a~~~-------~~~--~~ 92 (152)
T PF12422_consen 25 SLSGIFIKKIHKLIKCQIPQVSKSVLELYGEILFRAWKKASKD---KLEEIEEVCIQDLMEAAIHL-------EYL--PL 92 (152)
T ss_pred HhhHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhHhhhhh---HHHHHHHHHHHHHHHHhHHh-------cch--Hh
Confidence 36667778888888777745554 5666776665554444222 22222244566655554221 000 00
Q ss_pred CHHHHHHHHHHHHHHHhhCCCchhhhh-cHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 001255 114 NAVLRARCCEYALLVLEHWPDAPEIQR-SADLYEDLIRCCVADAMSEVRSTARMCYRM 170 (1113)
Q Consensus 114 ~~~vR~~~a~~L~~~l~~~~~~~~~~~-~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~ 170 (1113)
++.+|. +|..+-++=.. ..++. ....++.+|=+.|.-+|+.||.+|-..|.-
T Consensus 93 ~~~~R~----~L~~f~~~k~~-~~v~~mL~rl~~PiL~r~L~~~n~~Vr~na~~l~~~ 145 (152)
T PF12422_consen 93 HSKFRE----VLLSFHSQKKR-KGVDEMLLRLYEPILWRALQAANAKVRSNAAALFLD 145 (152)
T ss_pred HHHHHH----HHHHHHhcccc-cchHHHHHHHHHHHHHHHHcCCCcchhccHHHHHHH
Confidence 112222 22222221111 12222 367788999999999999999999877653
No 335
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=29.07 E-value=8.7e+02 Score=29.61 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=88.0
Q ss_pred HHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcch----HHHHHHHHHHHHHHhcCCch
Q 001255 510 LRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF----ESYMERILPHVFSRLIDPKE 585 (1113)
Q Consensus 510 L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~----~~~l~~ll~~ll~klgD~K~ 585 (1113)
||-++...+.. .+.+|.+..+++...-+.+|. .|.++=.+.++...++ +-|...+||-|- .|.
T Consensus 7 LQ~i~~~~P~i---~~~nL~k~~~lr~s~qnr~~~-----~LsilWaigQag~~DL~vGLkvW~~~mLP~l~-----~K~ 73 (469)
T PF10151_consen 7 LQAIAQSKPDI---CTNNLPKYAELRNSYQNRPNI-----CLSILWAIGQAGQGDLSVGLKVWQHLMLPVLE-----LKS 73 (469)
T ss_pred HHHHHccCcHH---HHHhHHHHHHHHHhhhcCCch-----hHHHHHHHhcccccchHHHHHHHHHhhhhhcc-----CCC
Confidence 45555555542 236888888877777777663 5666667777765554 689999999883 332
Q ss_pred hhHHHHHHHHHHHHhhCC---------ccchHHHHHHhhccCCCHHHHH--HHHHHHHHHHhhhccCCCCCCChhhHHHH
Q 001255 586 LVRQPCSTTLDIVSKTYS---------VDSLLPALLRSLDEQRSPKAKL--AVIEFAISSLNKHAMNSEGSGNLGILKLW 654 (1113)
Q Consensus 586 ~vr~~a~~~L~~i~e~~~---------~~~~l~~l~~~~~~~knpkvk~--~~L~~l~~~l~~~~~~~~~~~~~~~~~~~ 654 (1113)
...-+..-|+.+....+ +...|..+++++....|..+|. +=|+=+...|.+....+.. ...++..
T Consensus 74 -~s~~vi~yleriL~~~~~~~~g~~li~p~~F~~ll~~~f~~~~~~~k~l~e~l~~~yp~LK~la~~~~p---~s~~~~~ 149 (469)
T PF10151_consen 74 -YSPYVIQYLERILSLHGNVTKGERLIPPQEFFPLLRLTFPPSNSLSKALQERLEAIYPRLKELAFAGKP---GSTLHTY 149 (469)
T ss_pred -cchHHHHHHHHHHhcCcccccCcCCCCHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhcCCc---hhHHHHH
Confidence 33445556665553211 3345666777776555543332 3333333344433221111 1234444
Q ss_pred HHhHcccc-CCCCHHHHHHHHHHHHHHH
Q 001255 655 LAKLTPLV-HDKNTKLKEAAITCIISVY 681 (1113)
Q Consensus 655 l~~l~~~~-~d~n~~VR~aA~~~L~~l~ 681 (1113)
+..+...+ .+.+.+.++-+..+++.-.
T Consensus 150 f~~~l~~~~~~~~~~~~~E~~~~li~CL 177 (469)
T PF10151_consen 150 FPSFLSKATPECPPELKKELISILIWCL 177 (469)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHh
Confidence 55554444 4467789998888887543
No 336
>PF10025 DUF2267: Uncharacterized conserved protein (DUF2267); InterPro: IPR018727 This entry contains proteins that have no known function. ; PDB: 2YSK_A.
Probab=29.05 E-value=5e+02 Score=25.29 Aligned_cols=117 Identities=10% Similarity=0.047 Sum_probs=66.2
Q ss_pred HHHHHHHHHhc-CCchhhHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHH-HHHHHHhhhccCCCCCCCh
Q 001255 571 RILPHVFSRLI-DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIE-FAISSLNKHAMNSEGSGNL 648 (1113)
Q Consensus 571 ~ll~~ll~klg-D~K~~vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~-~l~~~l~~~~~~~~~~~~~ 648 (1113)
.+|-.+-+.+| +.+..-..++..+|.++++..+++....-. .+--+.++..... |-. .-.+. .
T Consensus 4 ~fl~~V~~~~~l~~~~~A~~a~~avL~~L~~rL~~~ea~~La-----~qLP~~l~~~l~~gw~~------~~~~~---~- 68 (125)
T PF10025_consen 4 EFLDEVRERAGLPDREEAYRATRAVLHTLRERLPPEEAADLA-----AQLPMELRGILYEGWRP------SEGPG---R- 68 (125)
T ss_dssp HHHHHHHHHHT---HHHHHHHHHHHHHHHHTTS-HHHHHHHH-----TTS-HHHHHHHHTT--T------TS--------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH-----HhCCHHHHHHHHhcccC------CCCCC---C-
Confidence 34556666676 466677778888888888888877633321 2222233321111 110 00000 1
Q ss_pred hhHHHHHHhHcccc-CCCCHHHHHHHHHHHHHHHhhcChhHHHHHHhcCCHHHHH
Q 001255 649 GILKLWLAKLTPLV-HDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQN 702 (1113)
Q Consensus 649 ~~~~~~l~~l~~~~-~d~n~~VR~aA~~~L~~l~~~~~~~~~~~~l~~L~~~~~~ 702 (1113)
.....++..+...+ .+.+.+.+..+..++.+|..++++..+...+..||.++.+
T Consensus 69 ~~~~eF~~rVa~~~~~~~~~~a~~~~~aV~~~l~~~v~~ge~~~v~~~LP~~~~~ 123 (125)
T PF10025_consen 69 FDLDEFLARVAERLGGADEDDAERLARAVFAALREAVSEGEFEDVRSQLPKDLRE 123 (125)
T ss_dssp -SHHHHHHHHHHTSEETTEE-HHHHHHHHHHHHHHHS-HHHHHHHHHTS-HHHHT
T ss_pred CCHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHH
Confidence 23456677777744 3455599999999999999998777777777778877643
No 337
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=28.91 E-value=1.1e+03 Score=32.97 Aligned_cols=103 Identities=16% Similarity=0.363 Sum_probs=68.8
Q ss_pred hhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChh---hHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCH
Q 001255 958 DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF---RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ 1034 (1113)
Q Consensus 958 ~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~---~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~ 1034 (1113)
.-++.|+..++.-.=..+..+...|++-+......+...+... .++..|...+-+++....-.|+++|..|++..+
T Consensus 427 ~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~- 505 (1426)
T PF14631_consen 427 EVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP- 505 (1426)
T ss_dssp HHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H-
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH-
Confidence 3355666644444334567788899999999999999888653 477777777766666666688999999997654
Q ss_pred HHHHhhhhhHHHHHHHHhcC-CCHHHHHH
Q 001255 1035 EELMAQLPSFLPALFEAFGN-QSADVRKT 1062 (1113)
Q Consensus 1035 ~~l~~~L~~lip~l~~~l~D-~~seVRka 1062 (1113)
+.+.+ ...++.++..++++ ....||+.
T Consensus 506 ~~l~~-fa~~l~giLD~l~~Ls~~qiR~l 533 (1426)
T PF14631_consen 506 SELQP-FATFLKGILDYLDNLSLQQIRKL 533 (1426)
T ss_dssp HHHHH-THHHHHGGGGGGGG--HHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHhcCCHHHHHHH
Confidence 44433 34566677777776 45667775
No 338
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.30 E-value=4.1e+02 Score=33.26 Aligned_cols=135 Identities=14% Similarity=0.133 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHH---------HHHHh----hcC-cchHH----HHHHHHHHHHHHHhhC
Q 001255 501 CARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMK---------LFFQH----LDD-PHHKV----AQAALSTLADIIPSCR 562 (1113)
Q Consensus 501 keR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~---------~l~~~----l~D-sn~kV----~~~~L~~l~~l~~~~~ 562 (1113)
+.-..+++....+++.......+...+++.|.. .+.+| |.| .++++ ....|.+|.+++..|.
T Consensus 379 ~~t~~ale~a~~ic~~~~~g~~~~~~el~~L~~~i~~PvVa~GVL~wi~~~l~~~~~~~~~~~~~p~~L~LLdeIa~~Hp 458 (584)
T PF04858_consen 379 KSTKQALEKAHAICCNAARGSSELQAELPKLYSCIRYPVVAMGVLRWIESFLTDPSYFSSITELTPVHLALLDEIATRHP 458 (584)
T ss_pred HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhCCChhhHHHHHHHHHHhcCcchhhhccccCchHHHHhhHHHhcCH
Confidence 346778888888887654332222245555544 12222 344 34554 3467888888888874
Q ss_pred cchHHHHHHHHHHHHHHhcCCchh--hHHHHHHHHHHHHhhCCccchHHHHHHhhccCCCHHHHHHHHHHHHHHHh
Q 001255 563 KPFESYMERILPHVFSRLIDPKEL--VRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLN 636 (1113)
Q Consensus 563 ~~~~~~l~~ll~~ll~klgD~K~~--vr~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~knpkvk~~~L~~l~~~l~ 636 (1113)
.+++.+..+|..+|+-.+|..+. ..+.-...|+.+..-+....+++.|-.+-..-....+-..++.|....+-
T Consensus 459 -~lr~~vl~lL~~~le~~~~~l~~l~~le~kr~ilD~~V~L~s~G~VlPVl~~i~~~~~~~~iD~SLiRyFv~eVL 533 (584)
T PF04858_consen 459 -LLRPSVLDLLVRLLESEGDELDILVQLELKRTILDRMVHLLSRGYVLPVLEYIRKCWARGDIDPSLIRYFVTEVL 533 (584)
T ss_pred -hhHHHHHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHHHHhCCeeehHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 77899999999999977755443 23445667888888888888888774332211222334444555443333
No 339
>PLN03205 ATR interacting protein; Provisional
Probab=28.04 E-value=5.2e+02 Score=30.38 Aligned_cols=153 Identities=12% Similarity=0.179 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc-h--hhhh-----hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 001255 922 YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ-K--DVME-----DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVV 993 (1113)
Q Consensus 922 ~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~-~--~~~~-----~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l 993 (1113)
++..++..|+...+-.|..++-++|++|..++++. + .+|+ +|...+=...--+.+....-|+-.|...++.|
T Consensus 320 ~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVI 399 (652)
T PLN03205 320 NLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNII 399 (652)
T ss_pred eHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHh
Confidence 35667777777776667788888999888888765 2 2333 34433222222345677788999999999999
Q ss_pred HhhcChh---------hHHHHhhhhhccC-ChhHHHHHHHHHHHHHHhhCH------------H------------HHHh
Q 001255 994 LSQYDPF---------RCLSVIVPLLVTE-DEKTLVTCINCLTKLVGRLSQ------------E------------ELMA 1039 (1113)
Q Consensus 994 ~~~~~p~---------~~l~~l~~~l~s~-~~~~~~~al~~L~~lie~~~~------------~------------~l~~ 1039 (1113)
+-..++. -++.-+..+++.. ......+++.+|-.|+ .++. + ....
T Consensus 400 lmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLL-NCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k 478 (652)
T PLN03205 400 VMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLL-NCPKLYDRFDSLHEEKNSSDTENDSEGNFFALE 478 (652)
T ss_pred hhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHH-cCcHHHHHHhcCCccccccccccccccccccHH
Confidence 8776654 3666777777643 2334445666554433 1110 0 0112
Q ss_pred hhhhHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHhhh
Q 001255 1040 QLPSFLPALFEAFGN-----QSADVRKTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1040 ~L~~lip~l~~~l~D-----~~seVRkaAv~clv~i~~~lGe 1076 (1113)
....++.+|..|+.- .+=+.||.|+-.| ++..--|+
T Consensus 479 ~fSsIlegLAeCiac~~~s~~dIeLck~aiimL-AflASSGk 519 (652)
T PLN03205 479 AFGKIFEGLADCLTSPRKTSEDLELCRNVIMIL-ALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHH-HHHHhcCC
Confidence 356788888888763 3456788777544 45555553
No 340
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=27.99 E-value=1.2e+03 Score=32.62 Aligned_cols=123 Identities=13% Similarity=0.257 Sum_probs=77.3
Q ss_pred CCCChhHHHHHHH---------HHHHHHhcC-CCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcch
Q 001255 496 PSSDWCARVSAFN---------YLRSLLQQG-PKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPF 565 (1113)
Q Consensus 496 ~s~nWkeR~eal~---------~L~~~l~~~-~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~ 565 (1113)
.=..|++-..++. .|..++.+. .+..+|-..+|..+++.-..-+.-.+-+|+-..++-|..|+..+....
T Consensus 822 p~~ew~~~~s~~~~Rlp~~l~~~~~~~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~ 901 (2196)
T KOG0368|consen 822 PYLEWQEHISALANRLPPNLDKSLESLVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGGL 901 (2196)
T ss_pred ChHHHHHHHHHHhccCChhHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhcccH
Confidence 4456766555542 233333322 222334445666777766666666778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhH---HHHHHHHHHHHhhCCccchHHHHHHhhccCCC
Q 001255 566 ESYMERILPHVFSRLIDPKELVR---QPCSTTLDIVSKTYSVDSLLPALLRSLDEQRS 620 (1113)
Q Consensus 566 ~~~l~~ll~~ll~klgD~K~~vr---~~a~~~L~~i~e~~~~~~~l~~l~~~~~~~kn 620 (1113)
+.|...++-.||++.-..-.... ..-..++..+++.+..| +..+...+..|..
T Consensus 902 ~~H~~~v~~~Lle~Yl~VEk~F~~~~~~~e~~i~~lr~~~~~d--~~kVv~~i~SHs~ 957 (2196)
T KOG0368|consen 902 EAHAKEVVHDLLEEYLEVEKLFNGRDSHYEDVILRLREENKKD--LKKVVDIILSHSQ 957 (2196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhhhH--HHHHHHHHHcchh
Confidence 99999999999876421111011 13345667778877777 3455555545543
No 341
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=27.96 E-value=8.2e+02 Score=26.67 Aligned_cols=105 Identities=17% Similarity=0.142 Sum_probs=64.4
Q ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhh--cChhhHHHHhhhhhccCChhHHHHHH
Q 001255 946 LSLINEMLKNQKDVMEDSVEIVIEKLLHVT-KDAVPKVSNEAEHCLTVVLSQ--YDPFRCLSVIVPLLVTEDEKTLVTCI 1022 (1113)
Q Consensus 946 L~~L~~L~~~~~~~~~~~~~~~l~~ll~~~-~Ds~~~Vr~aa~~~l~~l~~~--~~p~~~l~~l~~~l~s~~~~~~~~al 1022 (1113)
...+..++...+. +...+++.|-..+ ++..+.++.-+.+++..++.. ........+|.+.+. .+++..+ +
T Consensus 105 a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~-~~~rp~v--~ 177 (234)
T PF12530_consen 105 AASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLS-LDYRPLV--L 177 (234)
T ss_pred HHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcC-CccchHH--H
Confidence 3567778876655 5666777777777 888888999999999999943 566677888888773 3333322 3
Q ss_pred HHHHHHHHhhC-----HHHHHhhhhhHHHHHHHHhcCCCH
Q 001255 1023 NCLTKLVGRLS-----QEELMAQLPSFLPALFEAFGNQSA 1057 (1113)
Q Consensus 1023 ~~L~~lie~~~-----~~~l~~~L~~lip~l~~~l~D~~s 1057 (1113)
+.|..++.-.+ .++....-..++..+-+...+.+.
T Consensus 178 ~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 178 KSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 33333332222 123333334444555555555553
No 342
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=27.81 E-value=6.7e+02 Score=32.11 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhh--H
Q 001255 925 QILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR--C 1002 (1113)
Q Consensus 925 ~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~--~ 1002 (1113)
+.+..|.....|.=..|+.++|.++-.|+.+.+..= ..+|-.+++++||+...|..-|--.|..|...-|.-+ +
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 334445555566666788899999999998765321 1366778899999999998888888877776645443 2
Q ss_pred HHHhhhhh-c-cCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhH
Q 001255 1003 LSVIVPLL-V-TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSF 1044 (1113)
Q Consensus 1003 l~~l~~~l-~-s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~l 1044 (1113)
+.-|-.++ + +-+.+....++-.|.+++=.+....+...|-.+
T Consensus 380 i~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~i 423 (988)
T KOG2038|consen 380 IDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISI 423 (988)
T ss_pred HHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHH
Confidence 33332222 1 223444444555666655444334444444333
No 343
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=27.50 E-value=9e+02 Score=27.01 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=80.5
Q ss_pred chhhH-HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch--------hhhhhHHHHHHHHHHHHhCCCh-----HH
Q 001255 916 HSIWT-KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK--------DVMEDSVEIVIEKLLHVTKDAV-----PK 981 (1113)
Q Consensus 916 ~~~~~-~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~--------~~~~~~~~~~l~~ll~~~~Ds~-----~~ 981 (1113)
...|+ ..|..|-..+++-+..++. -+.++++|..|..... .++--.+-..+|.+++.+.++. ..
T Consensus 54 p~~we~~~f~Glq~Ll~KGL~Ss~t--~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~ 131 (262)
T PF14225_consen 54 PQLWEWGNFEGLQPLLLKGLRSSST--YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQE 131 (262)
T ss_pred CccccCCCchhHHHHHhCccCCCCc--HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHH
Confidence 33464 6788888888888866544 5567888888877432 2333346678999999998876 44
Q ss_pred HHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHH
Q 001255 982 VSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRK 1061 (1113)
Q Consensus 982 Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRk 1061 (1113)
+.+.| +.+..+++..+...+-.++..+- .+.++.. -+++..++..+-..-...+-..++-.+..-+.+.-+.+|.
T Consensus 132 ~~~~A-~~La~~a~~~~~~~La~il~~ya-~~~fr~~---~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 132 CIEIA-EALAQVAEAQGLPNLARILSSYA-KGRFRDK---DDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHH-HHHHHHHHhCCCccHHHHHHHHH-hcCCCCH---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHH
Confidence 55444 34444444433333333333222 2333221 2333333322210000011111222345555666677777
Q ss_pred HHHHHHHHHHHHh
Q 001255 1062 TVVFCLVDIYIML 1074 (1113)
Q Consensus 1062 aAv~clv~i~~~l 1074 (1113)
....++-.+..++
T Consensus 207 ~~L~iL~~ll~~~ 219 (262)
T PF14225_consen 207 KTLQILKVLLPHV 219 (262)
T ss_pred HHHHHHHHHhccc
Confidence 7777666555544
No 344
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=27.39 E-value=1.4e+03 Score=29.34 Aligned_cols=142 Identities=20% Similarity=0.317 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHHHHHhchhh--hhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhh-cChhh---HHHHhhhhhc
Q 001255 938 DSSVREVALSLINEMLKNQKDV--MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ-YDPFR---CLSVIVPLLV 1011 (1113)
Q Consensus 938 n~~vr~~aL~~L~~L~~~~~~~--~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~-~~p~~---~l~~l~~~l~ 1011 (1113)
|+.+.-.+|.+++.....-.-. ..+|.-.+|-+.+. -+++|.+|-.|+-.++.- ..|-. ++..|...++
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~-----ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~ 280 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN-----IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLE 280 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh-----HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 8888888999999887754322 23444344444443 589999999999988844 55543 5555544443
Q ss_pred -----cCChhHHHHHHHHHHHHHHhhC---------------H---HHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 001255 1012 -----TEDEKTLVTCINCLTKLVGRLS---------------Q---EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1068 (1113)
Q Consensus 1012 -----s~~~~~~~~al~~L~~lie~~~---------------~---~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv 1068 (1113)
+.+--....-.+-+.+|+...| + ..+...+-.++|.+.+-+.|..-|.-.+-+-.+.
T Consensus 281 lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFls 360 (980)
T KOG2021|consen 281 LFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLS 360 (980)
T ss_pred HHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Confidence 2210011111222223333322 1 1222334447899999988888777666655554
Q ss_pred HHHHHhhhhhHhhhhcCChhh
Q 001255 1069 DIYIMLGKAFLPYLERLNSTQ 1089 (1113)
Q Consensus 1069 ~i~~~lGe~i~p~l~~L~~s~ 1089 (1113)
.+. .+.+-++.|++.+
T Consensus 361 dyl-----~~LKkl~~ls~~q 376 (980)
T KOG2021|consen 361 DYL-----AFLKKLKALSSPQ 376 (980)
T ss_pred HHH-----HHHhhcccccchh
Confidence 443 2334444455444
No 345
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=26.79 E-value=1.5e+03 Score=29.24 Aligned_cols=164 Identities=12% Similarity=0.204 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHh-----cCCC---HHHHHHHHHHHHHHHH--hchhhhhhHHH-HHHHHHHHHhCCChHHHHHHHHHHH
Q 001255 922 YFNQILTAVLEVL-----DDAD---SSVREVALSLINEMLK--NQKDVMEDSVE-IVIEKLLHVTKDAVPKVSNEAEHCL 990 (1113)
Q Consensus 922 ~f~~ll~~Ll~~L-----~D~n---~~vr~~aL~~L~~L~~--~~~~~~~~~~~-~~l~~ll~~~~Ds~~~Vr~aa~~~l 990 (1113)
.|..+|.-+..+| .++| .--.+.||+++..+.. .....+.+-.+ -+++.++-.++++---.+.-|-+.+
T Consensus 405 TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~i 484 (970)
T COG5656 405 TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFI 484 (970)
T ss_pred hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHH
Confidence 4666777777766 2333 3345678888888776 22233433322 2456666677887767777677777
Q ss_pred HHHHhhcChh----hHHHHhhhhhccCChhHHHHH-HHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHH
Q 001255 991 TVVLSQYDPF----RCLSVIVPLLVTEDEKTLVTC-INCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVF 1065 (1113)
Q Consensus 991 ~~l~~~~~p~----~~l~~l~~~l~s~~~~~~~~a-l~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~ 1065 (1113)
..+-.-++-. ..+......+++..-|..++| +.+...+...--.+.+..|+|.+|.-+..--++=+.|+=..
T Consensus 485 s~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~--- 561 (970)
T COG5656 485 STIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSM--- 561 (970)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHH---
Confidence 7665444332 233333444545445555544 34333444333336677899999999999888888887665
Q ss_pred HHHHHHHHhhhhhHhhhhcCChh
Q 001255 1066 CLVDIYIMLGKAFLPYLERLNST 1088 (1113)
Q Consensus 1066 clv~i~~~lGe~i~p~l~~L~~s 1088 (1113)
||-++...+.|++-||-+.|-.+
T Consensus 562 vMe~fVe~fseELspfa~eLa~~ 584 (970)
T COG5656 562 VMESFVEYFSEELSPFAPELAGS 584 (970)
T ss_pred HHHHHHHHhHHhhchhHHHHHHH
Confidence 44455566678899988887654
No 346
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=26.74 E-value=7.6e+02 Score=32.24 Aligned_cols=166 Identities=15% Similarity=0.218 Sum_probs=94.9
Q ss_pred HHHHhHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH-HHhhhhhhHHHHHhHHHHHHHHhhhCCC-
Q 001255 21 LLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVL-FKLVVITVLVIAESSDNCIKTMLRNCKA- 98 (1113)
Q Consensus 21 ~Lk~l~~~l~~~l~dlRS~vv~~Ac~~l~~La~~L~~~f~~~a~~~lp~L-l~~~~~t~kvi~~sa~~ai~~ii~~~~~- 98 (1113)
++..|...|.......+.+|+..-+..|..|+-+-...++.+++.|-|.| |+.+....+--.+---+|...|......
T Consensus 226 ~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~ 305 (802)
T PF13764_consen 226 QVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNN 305 (802)
T ss_pred HHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCC
Confidence 35555555555556677888999999999999999999999999999977 4444332221112224455555555432
Q ss_pred ---cccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhh--------CCCchhhh-hcHHHHHHHHHHHhcCCChH-HHHHHH
Q 001255 99 ---VRVLPRIADCAKNDRNAVLRARCCEYALLVLEH--------WPDAPEIQ-RSADLYEDLIRCCVADAMSE-VRSTAR 165 (1113)
Q Consensus 99 ---~r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~--------~~~~~~~~-~~~~~l~~~i~k~l~Da~~e-VR~~AR 165 (1113)
.++-..|++. -.+ ..++.||.-.+-. |.. .++ ..++.+.+++. |+..+... =+..+.
T Consensus 306 ~~G~~LK~~Il~~------GIv-~~a~~YL~~~~P~~~~~~s~eWk~--~l~~psLp~iL~lL~-GLa~gh~~tQ~~~~~ 375 (802)
T PF13764_consen 306 SNGNRLKDKILES------GIV-QDAIDYLLKHFPSLKNTDSPEWKE--FLSRPSLPYILRLLR-GLARGHEPTQLLIAE 375 (802)
T ss_pred CchHHHHHHHHHh------hHH-HHHHHHHHHhCcccccCCCHHHHH--HhcCCcHHHHHHHHH-HHHhcCHHHHHHHHh
Confidence 2333333321 112 3344555444322 221 122 34555555554 44444442 233566
Q ss_pred HHHHHHHhh--------ChHHHHHHHhcC--CHHHHHHHhh
Q 001255 166 MCYRMFAKT--------WPERSRRLFSSF--DPAIQRIINE 196 (1113)
Q Consensus 166 ~a~~~~~~~--------~p~~a~~ll~~L--d~~~~k~l~~ 196 (1113)
.++-.+|.+ .+..|+.+++.| ++...++|+.
T Consensus 376 ~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~v~~~I~~ 416 (802)
T PF13764_consen 376 QLLPLLHRLEQVSSEEHIGSLAENLLEALAENEDVAKKIQN 416 (802)
T ss_pred hHHHHHHHhhcCCCccchHHHHHHHHHHHhcChhHHHHHHH
Confidence 677777654 667899988865 4555666665
No 347
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=26.65 E-value=2e+02 Score=33.00 Aligned_cols=176 Identities=9% Similarity=0.059 Sum_probs=79.4
Q ss_pred CChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHhhCc-chHHHHHHHHHHH
Q 001255 498 SDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK-PFESYMERILPHV 576 (1113)
Q Consensus 498 ~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~-~~~~~l~~ll~~l 576 (1113)
..-..|.+|+..++.++..+.. .+ + .+++.++..-.+.+. ....-.++..|.....+ ..++|-.-+-..+
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~-~q-----~-~~l~~~i~~~~~~~~--~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~i 120 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEE-GQ-----T-AFLSTLIPSYASGNS--DDPIANLLTALLDYDSDLSLDPYRCWFAAVI 120 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HH-HH-----H-HHHHTTSSTT--SS----SSSS-HHHHHT------SS-HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHH-HH-----H-HHHHHHhccCCCCcc--cchhhHHHHHHHHhhccccCCHHHHHHHHHH
Confidence 4788999999999999988532 11 1 122222222222221 00001133333321111 2233322223333
Q ss_pred HHHh-cCCchhhHHHHHHH-HHHHHhhCCccchHHHHHHhhcc----CCCHHHHHHHHHHHHHHHhhhccCCCCC-CChh
Q 001255 577 FSRL-IDPKELVRQPCSTT-LDIVSKTYSVDSLLPALLRSLDE----QRSPKAKLAVIEFAISSLNKHAMNSEGS-GNLG 649 (1113)
Q Consensus 577 l~kl-gD~K~~vr~~a~~~-L~~i~e~~~~~~~l~~l~~~~~~----~knpkvk~~~L~~l~~~l~~~~~~~~~~-~~~~ 649 (1113)
+--+ -|.- ..|+.+.+. .....+.-++..++..+...+.. ...+++++..|..|..++.+...-..+| ....
T Consensus 121 l~hll~dn~-~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s 199 (312)
T PF04869_consen 121 LMHLLRDNP-EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGS 199 (312)
T ss_dssp HHHHHTT-H-HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTT
T ss_pred HHHHHhcCH-HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcc
Confidence 3333 2332 123333322 11112234455577777777654 3469999999988877775421101122 2223
Q ss_pred hHHHHHHhHccccCCCCHHHHHHHHHHHHHHHhhc
Q 001255 650 ILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHY 684 (1113)
Q Consensus 650 ~~~~~l~~l~~~~~d~n~~VR~aA~~~L~~l~~~~ 684 (1113)
++...+.. ..-..+.++-|+--+.-+||..|...
T Consensus 200 ~l~~Li~~-~~~~~~~~~~VqGL~A~LLGicyef~ 233 (312)
T PF04869_consen 200 NLQSLIEF-SNQSSSEDVLVQGLCAFLLGICYEFS 233 (312)
T ss_dssp HHHHHHHH-HS--TCCCHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHH-hhcCCCCcchHHHHHHHHHHHHHHhc
Confidence 33333322 22334578999999999999999755
No 348
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=26.61 E-value=4.2e+02 Score=25.79 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhhh
Q 001255 922 YFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVM 960 (1113)
Q Consensus 922 ~f~~ll~~Ll~~L~D~-n~~vr~~aL~~L~~L~~~~~~~~ 960 (1113)
.+..++..|.++|.|+ |..+.-.+|.+|..|+++-...+
T Consensus 36 ~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~ 75 (127)
T smart00273 36 SFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRV 75 (127)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHH
Confidence 5788888999999888 78888999999999998765544
No 349
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=26.36 E-value=7.7e+02 Score=31.86 Aligned_cols=124 Identities=13% Similarity=0.149 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhh---cChh----hHHHHhhhhh---ccCChhH-HHHHH-HHHHHHHHhh
Q 001255 965 EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ---YDPF----RCLSVIVPLL---VTEDEKT-LVTCI-NCLTKLVGRL 1032 (1113)
Q Consensus 965 ~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~---~~p~----~~l~~l~~~l---~s~~~~~-~~~al-~~L~~lie~~ 1032 (1113)
..++|.++-.+=|..+.+++=|...+..+... +..+ .++..+...+ ..+.+.. .+.-+ .-+..+++.+
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW~g~~~Il~~l 198 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRISPNNYNPDSVIRFWSGFSLILRLL 198 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHc
Confidence 56778888888888889999999999887654 3322 2333333332 2222211 11001 2334566777
Q ss_pred CHHHHHhhhhh-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhHhhhhcCChh
Q 001255 1033 SQEELMAQLPS-----FLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNST 1088 (1113)
Q Consensus 1033 ~~~~l~~~L~~-----lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe~i~p~l~~L~~s 1088 (1113)
+.+.+..++.. ++..++.++.+...+.---...|+-.+...+|.++|-+++..++.
T Consensus 199 d~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~p~ 259 (727)
T PF12726_consen 199 DKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWDAMGPISPQ 259 (727)
T ss_pred cHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhcccCCCCHH
Confidence 77777655544 677888999988677778889999999999999999988887766
No 350
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=25.71 E-value=8.7e+02 Score=26.21 Aligned_cols=178 Identities=12% Similarity=0.153 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHHhchhhhhh---HHHHHHHH
Q 001255 902 GALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD--------ADSSVREVALSLINEMLKNQKDVMED---SVEIVIEK 970 (1113)
Q Consensus 902 ~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D--------~n~~vr~~aL~~L~~L~~~~~~~~~~---~~~~~l~~ 970 (1113)
.+++.|..++.......-.-++..++..+.....+ ....+=...+.+|..|+..-+..+.. -+..++..
T Consensus 7 ~~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~ 86 (223)
T PF10441_consen 7 LILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQR 86 (223)
T ss_pred HHHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHH
Confidence 34555555555553322223466667666665532 23345566788888888876654432 24445556
Q ss_pred HHHHhC--------CChHHHHHH--HHHHHHHHHhhcChhhHHHHhhhhhccC--ChhHHHHHHHHHHHHHHhhCHHHHH
Q 001255 971 LLHVTK--------DAVPKVSNE--AEHCLTVVLSQYDPFRCLSVIVPLLVTE--DEKTLVTCINCLTKLVGRLSQEELM 1038 (1113)
Q Consensus 971 ll~~~~--------Ds~~~Vr~a--a~~~l~~l~~~~~p~~~l~~l~~~l~s~--~~~~~~~al~~L~~lie~~~~~~l~ 1038 (1113)
+|.++. .......+. |..+.+.+...|.|. .+.+. .........+...+. +.
T Consensus 87 LL~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep~--------~~~~~~~~~~~l~~~~~~~k~~--------~~ 150 (223)
T PF10441_consen 87 LLRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEPS--------SVSRSSKKTSSLTSATSSAKKS--------LR 150 (223)
T ss_pred HHHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCcc--------cccccccccccccHHHHHHHHH--------HH
Confidence 665554 111223333 777777777777771 12111 111111112222222 22
Q ss_pred hhhhhHHHH-HHHHhc-CCCHHHHHHHHHHHHHHHHHhhh-hhHhhhhcCChhhHhhHHH
Q 001255 1039 AQLPSFLPA-LFEAFG-NQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTI 1095 (1113)
Q Consensus 1039 ~~L~~lip~-l~~~l~-D~~seVRkaAv~clv~i~~~lGe-~i~p~l~~L~~s~~kLl~~ 1095 (1113)
.+++-++-. +..... .-.++||++=.-+|-+++.++++ ++.=....|+.+-+.+...
T Consensus 151 kh~~~lL~~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~ 210 (223)
T PF10441_consen 151 KHAPYLLANYISLQLKYTLPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKS 210 (223)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHH
Confidence 333322222 222222 47889999999988888888886 5444446777666554433
No 351
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=25.62 E-value=1.7e+02 Score=29.55 Aligned_cols=55 Identities=7% Similarity=0.295 Sum_probs=47.5
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhhh-hhHhhhhcCChhhHhhHHHHHHhhhccccC
Q 001255 1052 FGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANRISQARTG 1106 (1113)
Q Consensus 1052 l~D~~seVRkaAv~clv~i~~~lGe-~i~p~l~~L~~s~~kLl~~yi~R~~~~r~~ 1106 (1113)
+...+.+|+..+....+.+..-|-. +|...+.+|+....-+|--||=|.....++
T Consensus 64 ~~t~~q~vK~~a~~~v~~vL~~ik~adI~~~v~~Ls~e~~DiLmKYiYkGm~~p~d 119 (152)
T KOG3380|consen 64 YGTKDQEVKDRALNVVLKVLTSIKQADIEAAVKKLSTEEIDILMKYIYKGMEIPSD 119 (152)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHhcCccc
Confidence 4678889999999999999888885 899999999999999999999998665433
No 352
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=25.42 E-value=2.8e+02 Score=26.77 Aligned_cols=69 Identities=10% Similarity=0.274 Sum_probs=34.2
Q ss_pred HHHHhhhhhc-cCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 001255 1002 CLSVIVPLLV-TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1074 (1113)
Q Consensus 1002 ~l~~l~~~l~-s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~lip~l~~~l~D~~seVRkaAv~clv~i~~~l 1074 (1113)
++|++..++. ++....+.+|+=.++.|..+.+-+. ..+..++..+.+....... .+.+.-|+..+|..-
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~--~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD--EVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH--HHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 4555555555 3333445555555555554443211 1234444555555444443 455666666666544
No 353
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=25.41 E-value=97 Score=22.96 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001255 1044 FLPALFEAFGNQSADVRKTVVFCLVDI 1070 (1113)
Q Consensus 1044 lip~l~~~l~D~~seVRkaAv~clv~i 1070 (1113)
++|.+.+.+.+.+.++++.|..++-.+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 567788888888999999999988655
No 354
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=25.21 E-value=1e+03 Score=26.84 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=8.3
Q ss_pred hcCCCHHHHHHHHHHHH
Q 001255 1052 FGNQSADVRKTVVFCLV 1068 (1113)
Q Consensus 1052 l~D~~seVRkaAv~clv 1068 (1113)
++...++.|+.-+..+.
T Consensus 209 l~~~~~~~~~~i~~~l~ 225 (322)
T cd07920 209 LELGDPDDTSRIIEKLL 225 (322)
T ss_pred HhcCCHHHHHHHHHHHH
Confidence 34444555555555443
No 355
>PF07159 DUF1394: Protein of unknown function (DUF1394); InterPro: IPR009828 This family consists of several hypothetical eukaryotic proteins of around 320 residues in length. The function of this family is unknown.
Probab=24.49 E-value=2.4e+02 Score=32.19 Aligned_cols=87 Identities=14% Similarity=0.243 Sum_probs=54.1
Q ss_pred HHHHhhcCcchH-HHHHHHHHHHHHHHhhCcc--hHHHHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHHhhCCccc
Q 001255 534 LFFQHLDDPHHK-VAQAALSTLADIIPSCRKP--FESYMERILPHVFSRLIDP----KELVRQPCSTTLDIVSKTYSVDS 606 (1113)
Q Consensus 534 ~l~~~l~Dsn~k-V~~~~L~~l~~l~~~~~~~--~~~~l~~ll~~ll~klgD~----K~~vr~~a~~~L~~i~e~~~~~~ 606 (1113)
.+.....++|.. ....+.++|..++..++.. |..-+..++|.++..|.-. ++.+- .-+..+..+++-+..-.
T Consensus 46 ~Ir~Ai~~Ps~ee~qe~aw~al~P~V~kLk~Fy~Fs~~le~~~~~ll~~L~~~~~~~~~~l~-~~qAL~kq~a~iL~f~l 124 (303)
T PF07159_consen 46 EIRQAISNPSDEELQEKAWEALEPLVKKLKEFYEFSQELEKVFPKLLKELCSGPLKPKEHLE-QKQALAKQFAEILDFVL 124 (303)
T ss_pred HHHHHHcCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhH-HhHHHHHHHHHHHHHHh
Confidence 334445666665 8899999999999988754 4788899999999999622 22221 12234444455444444
Q ss_pred hHHHHHHhhccCCCHHHHHH
Q 001255 607 LLPALLRSLDEQRSPKAKLA 626 (1113)
Q Consensus 607 ~l~~l~~~~~~~knpkvk~~ 626 (1113)
.|+.| ...||-++-.
T Consensus 125 ~fD~L-----K~~npaIqND 139 (303)
T PF07159_consen 125 KFDEL-----KMMNPAIQND 139 (303)
T ss_pred hhhhh-----hccChhhhcc
Confidence 44444 2346655543
No 356
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.09 E-value=7.5e+02 Score=37.29 Aligned_cols=111 Identities=18% Similarity=0.323 Sum_probs=67.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhch-----hhhhhHHHHHHHHHHHHhCCChHH---------HHHHHHHHHHHHH--h
Q 001255 932 EVLDDADSSVREVALSLINEMLKNQK-----DVMEDSVEIVIEKLLHVTKDAVPK---------VSNEAEHCLTVVL--S 995 (1113)
Q Consensus 932 ~~L~D~n~~vr~~aL~~L~~L~~~~~-----~~~~~~~~~~l~~ll~~~~Ds~~~---------Vr~aa~~~l~~l~--~ 995 (1113)
.+|.|.|...-++ |+.+.++-..+. ..+. |++.++|.+++-+.+-.+. .|..+.+.++.+. +
T Consensus 12 ~~l~d~~~~~~~k-lk~~~E~~~~le~~~~~~~~~-~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~e 89 (3550)
T KOG0889|consen 12 RRLVDVNLPIESK-LKMLVEIRDFLENLFSPESYL-FLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHNE 89 (3550)
T ss_pred HHhccCCCchHHH-HHHHHHHHHHHHHhcChHHHH-HHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccHH
Confidence 5666665442222 444444444332 3355 8999999999988765444 4444444444333 1
Q ss_pred hcCh--hhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHH
Q 001255 996 QYDP--FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 1045 (1113)
Q Consensus 996 ~~~p--~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~li 1045 (1113)
++.| ..++.+++.+|+.+|..--+-|+|.++.+...+. ..+..++..++
T Consensus 90 ~~~~~~~~~~~~~~~vl~~dNeen~~l~lkii~~l~r~f~-~~~~~~v~~fl 140 (3550)
T KOG0889|consen 90 VFKPFSQELLKVLMRVLTNDNEENAILCLKIITDLFRQFK-SLVEQHVQPFL 140 (3550)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHhhc-hHHHHHHHHHH
Confidence 2222 2488899999988888777889999999987665 34444443333
No 357
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=24.07 E-value=8e+02 Score=29.01 Aligned_cols=70 Identities=16% Similarity=0.309 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhchhhhhhHHH-HHHHHHHHHhC----CChHHHHHHHHHHHHHHH
Q 001255 925 QILTAVLEVLDDA---DSSVREVALSLINEMLKNQKDVMEDSVE-IVIEKLLHVTK----DAVPKVSNEAEHCLTVVL 994 (1113)
Q Consensus 925 ~ll~~Ll~~L~D~---n~~vr~~aL~~L~~L~~~~~~~~~~~~~-~~l~~ll~~~~----Ds~~~Vr~aa~~~l~~l~ 994 (1113)
.|+..|..++.+. ...|-..|+.++..+..+-+..+.---+ .+++.+|+.+. -+..++..+.-.++.+||
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~Aic 183 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAIC 183 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHh
Confidence 5566677777664 4667778888888888876655433222 23333444443 233555555556666555
No 358
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=23.86 E-value=8e+02 Score=25.19 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHH
Q 001255 921 KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSV 964 (1113)
Q Consensus 921 ~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~ 964 (1113)
+....+|+.+...|..+...-+..||.+|..|++..++.+..+.
T Consensus 65 d~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I~~~~ 108 (164)
T PF13925_consen 65 DLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVIRSNL 108 (164)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888776666677789999999987666555443
No 359
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=23.60 E-value=9.4e+02 Score=25.87 Aligned_cols=39 Identities=15% Similarity=0.253 Sum_probs=31.0
Q ss_pred HHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHH
Q 001255 122 CEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVR 161 (1113)
Q Consensus 122 a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR 161 (1113)
+..+.-.|..|+.+ .++...+.+++..++-|.+-+.+|.
T Consensus 64 i~~~n~fl~~~~~~-~~~~~~~~~~~YyKkhIy~~d~~v~ 102 (205)
T PF12238_consen 64 ISHMNAFLNDWPPH-MLEEGREKMTKYYKKHIYKEDSEVK 102 (205)
T ss_pred HHHHHHHHccCchh-hhhccHHHHHHHHHHhccCcccccc
Confidence 34455566789875 6777888899999999999999983
No 360
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=23.46 E-value=1.3e+02 Score=31.14 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=52.2
Q ss_pred ccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhChH
Q 001255 100 RVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPE 177 (1113)
Q Consensus 100 r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~~~~p~ 177 (1113)
.++|.+...+ ++|...-....+++|..++..|.+. +...... ..-.-|+.-+..|=.+.+..||..|.++++-
T Consensus 69 ~lLP~i~~LL-~Sk~E~~i~~aL~~L~~i~~~f~~~--I~~~~~~--~~~~~gVDl~~EeR~~kc~~c~~~L~~i~~~ 141 (164)
T PF13925_consen 69 DLLPLIEELL-QSKYESYISVALEMLRSILKKFGPV--IRSNLSA--PSPSIGVDLSAEERMEKCQECYQQLRKIVQI 141 (164)
T ss_pred HHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHh--cccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888 6999999999999999999999753 2221111 1223345555556556789999999888653
No 361
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=23.37 E-value=5.2e+02 Score=29.88 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=23.0
Q ss_pred HHHHHHHHhhCcchHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 001255 552 STLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDI 597 (1113)
Q Consensus 552 ~~l~~l~~~~~~~~~~~l~~ll~~ll~klgD~K~~vr~~a~~~L~~ 597 (1113)
.+|.+|+.+.. ++ .-+..++..|-.|+-|... .--.+.++|++
T Consensus 40 ~lm~eIA~~ty-~~-~e~~eIm~vi~kRl~d~gk-nWR~VyKaLtl 82 (336)
T KOG2056|consen 40 TLMAEIAQATY-NF-VEYQEIMDVLWKRLNDSGK-NWRHVYKALTL 82 (336)
T ss_pred HHHHHHHHHhc-CH-HHHHHHHHHHHHHHhhccc-hHHHHHHHHHH
Confidence 34556666543 22 3345677778888764432 22245555543
No 362
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=23.28 E-value=1.5e+03 Score=28.21 Aligned_cols=123 Identities=12% Similarity=0.171 Sum_probs=61.5
Q ss_pred hHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHhchhh
Q 001255 882 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLE--VLDDADSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 882 i~~lL~~l~~~~~~~~~~R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~--~L~D~n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
..+|+..+....+.........|..+...+...-. .++..+..|+..++. |+ +-+..++..=+.+|..|+.+.+
T Consensus 31 Y~~L~~~l~~~~~~~d~~~~~~l~~~L~~L~~~Vs-~Ld~~~~~LV~ail~~~W~-~~~~~~v~~y~~Fl~~Lvsa~~-- 106 (563)
T PF05327_consen 31 YDELVEQLSDPSESKDAISVSQLIRWLKALSSCVS-LLDSSCKQLVEAILSLNWL-GRDEDFVEAYIQFLINLVSAQP-- 106 (563)
T ss_dssp HHHHHHHHHS-TT-TTS--HHHHHHHHHHHHHGGG-GG-SCCHHHHHHHHT-TGG-GS-HHHHHHHHHHHHHHHHH-G--
T ss_pred HHHHHHHHcccccCcccccHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHHHHhhH--
Confidence 56677777322211011222333333333332221 223346777777654 44 4466777777888888887654
Q ss_pred hhhHHHHHHHHHHHHhCCCh--------------HHHHHHHHHHHHHHHhhcChh--hHHHHhhhhh
Q 001255 960 MEDSVEIVIEKLLHVTKDAV--------------PKVSNEAEHCLTVVLSQYDPF--RCLSVIVPLL 1010 (1113)
Q Consensus 960 ~~~~~~~~l~~ll~~~~Ds~--------------~~Vr~aa~~~l~~l~~~~~p~--~~l~~l~~~l 1010 (1113)
.|+..++..|++.+..+. ..+.+-+..++..|+..+|.. .++++|...+
T Consensus 107 --~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP~s~~~L~~~l~~~F 171 (563)
T PF05327_consen 107 --KYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKILRLVPTSPSFLIPILVQNF 171 (563)
T ss_dssp --GGHHHHHHHHHHGGGS-HHHHHH---------------HHHHHHHHHHH-GGGHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 455566666666554332 334456889999999888763 3455444333
No 363
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=22.66 E-value=1.5e+03 Score=27.98 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHHHHhCCChHHHHHHHHH----HHHHHHhhc--ChhhH---HHHhhhhhccCChhHHHHHHHHHHHHHH
Q 001255 960 MEDSVEIVIEKLLHVTKDAVPKVSNEAEH----CLTVVLSQY--DPFRC---LSVIVPLLVTEDEKTLVTCINCLTKLVG 1030 (1113)
Q Consensus 960 ~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~----~l~~l~~~~--~p~~~---l~~l~~~l~s~~~~~~~~al~~L~~lie 1030 (1113)
+..|+...+-..++.+.|-..++.+.... .|+.+..+| .|+.+ +|.++++|-.-+ |.-..++..+-.||.
T Consensus 149 ~~~ylslaai~~adLL~~hTEv~~~siLSgn~~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~-p~~~~ll~~l~~LI~ 227 (851)
T KOG3723|consen 149 MSNYLSLAAITKADLLADHTEVIVKSILSGNTMLLRVLSAVYEKQPQPINPHLPELLALLSQLE-PEQYHLLRLLHVLIK 227 (851)
T ss_pred chhhhhHHHHhhhhhccCchHHHHHHHhccchHHHHHHHHHHhcCCCccCcccHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 45677777777778888876777777666 555444443 34433 444455554333 233456777778887
Q ss_pred hhCHHHHHhhhhhHHHHHHHHhcC-CCHHHHHHHH
Q 001255 1031 RLSQEELMAQLPSFLPALFEAFGN-QSADVRKTVV 1064 (1113)
Q Consensus 1031 ~~~~~~l~~~L~~lip~l~~~l~D-~~seVRkaAv 1064 (1113)
+-.++.|..++ |.|.-++.| .-.++|-.-.
T Consensus 228 Qk~~evL~~ci----P~L~g~l~ds~~~~i~~~Il 258 (851)
T KOG3723|consen 228 QKQLEVLQKCI----PFLIGHLKDSTHNDIILNIL 258 (851)
T ss_pred hccHHHHHHHH----HHHHHHhccccchhHHHHHH
Confidence 77777765555 555544444 4445554433
No 364
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.11 E-value=7.5e+02 Score=34.36 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=66.9
Q ss_pred hHHHHHhHHHHHHHHhhhCCCcccHHHHHHHhh----hcCCHHHHHHHHHHHHHHHh--hCCCchhhhhcHHHHHHHHHH
Q 001255 78 VLVIAESSDNCIKTMLRNCKAVRVLPRIADCAK----NDRNAVLRARCCEYALLVLE--HWPDAPEIQRSADLYEDLIRC 151 (1113)
Q Consensus 78 ~kvi~~sa~~ai~~ii~~~~~~r~l~~i~~~~~----~~K~~~vR~~~a~~L~~~l~--~~~~~~~~~~~~~~l~~~i~k 151 (1113)
+.+-..++-.|..-+......+.+.+.++..++ .+=+=.+|..+..|+..++- .+. .-+-+.+.|.+.+-+
T Consensus 1500 ~d~a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv---~~~~~r~dI~~l~~s 1576 (1710)
T KOG1851|consen 1500 VDLAKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV---SQELRRDDIRKLLES 1576 (1710)
T ss_pred chHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc---ccchhHHHHHHHHHH
Confidence 344455566666666666655544444443332 35577788888999977653 343 235568899999999
Q ss_pred HhcCCChHHHHHHHHHHHHHHhh
Q 001255 152 CVADAMSEVRSTARMCYRMFAKT 174 (1113)
Q Consensus 152 ~l~Da~~eVR~~AR~a~~~~~~~ 174 (1113)
.++|.+-+||+.|.+|+..|...
T Consensus 1577 ~l~D~~i~vre~Aa~~Lsgl~~~ 1599 (1710)
T KOG1851|consen 1577 LLNDDQIEVREEAAKCLSGLLQG 1599 (1710)
T ss_pred HHcchHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998765
No 365
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=22.09 E-value=6.8e+02 Score=26.32 Aligned_cols=78 Identities=15% Similarity=0.159 Sum_probs=61.4
Q ss_pred cccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhChHH
Q 001255 99 VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPER 178 (1113)
Q Consensus 99 ~r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~~~~p~~ 178 (1113)
+.+.+.+..-+ ++.|+=+|+.+...+...+.. ...+.+.+.+...+.|.+.-||...-=++..+.+..|+.
T Consensus 119 ~~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~--------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 119 PEALELLEKWA-KSDNEWVRRAAIVMLLRYIRK--------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp GGHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG--------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH
T ss_pred HHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 66777777666 688999999887665433333 346678888889999999999999999999999999999
Q ss_pred HHHHHhc
Q 001255 179 SRRLFSS 185 (1113)
Q Consensus 179 a~~ll~~ 185 (1113)
...++..
T Consensus 190 v~~~l~~ 196 (213)
T PF08713_consen 190 VLEFLQK 196 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 366
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.95 E-value=6.4e+02 Score=29.96 Aligned_cols=87 Identities=16% Similarity=0.261 Sum_probs=62.4
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHHHHHHhhCcchHH------HHHHHHHHHHHHh-cC-CchhhHHHHHHHHHHHHhhCC
Q 001255 532 MKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFES------YMERILPHVFSRL-ID-PKELVRQPCSTTLDIVSKTYS 603 (1113)
Q Consensus 532 ~~~l~~~l~Dsn~kV~~~~L~~l~~l~~~~~~~~~~------~l~~ll~~ll~kl-gD-~K~~vr~~a~~~L~~i~e~~~ 603 (1113)
+.+|..-+..+.-.=+..+|.+|...+..||+.|+. +|..|+-.+--|. |+ .-+-|+.++.+.|-.|--.++
T Consensus 47 v~LlaHKiqSPqe~EAl~altvLe~cmkncGekfH~evgkfrFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv~lp 126 (594)
T KOG1086|consen 47 VRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKFHEEVGKFRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTVSLP 126 (594)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhheecCc
Confidence 556666677888888899999999999999999853 3333333333232 42 244489999999999998888
Q ss_pred ccchHHHHHHhhccC
Q 001255 604 VDSLLPALLRSLDEQ 618 (1113)
Q Consensus 604 ~~~~l~~l~~~~~~~ 618 (1113)
-+.=+...+..+..+
T Consensus 127 e~~KikdaYqmLKkq 141 (594)
T KOG1086|consen 127 EEPKIKDAYQMLKKQ 141 (594)
T ss_pred ccchHHHHHHHHHhc
Confidence 877677777766543
No 367
>KOG2434 consensus RNA polymerase I transcription factor [Transcription]
Probab=21.76 E-value=1.5e+03 Score=27.87 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=52.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhhcCh--hhHHHHhhhhhc
Q 001255 935 DDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLH-VTKDAVPKVSNEAEHCLTVVLSQYDP--FRCLSVIVPLLV 1011 (1113)
Q Consensus 935 ~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~-~~~Ds~~~Vr~aa~~~l~~l~~~~~p--~~~l~~l~~~l~ 1011 (1113)
.+..+.+.++.+.++..++...+.-+++++..++..+.. ..-+ ..++-+.+..|+..+....|. .-++++|...+-
T Consensus 84 ~~~~~sv~~~~~~~l~~l~~~~~~~l~~c~~~lv~~~~~~~v~~-~~~~fe~~H~al~~v~r~vP~~~~~l~~~L~~~~p 162 (500)
T KOG2434|consen 84 RSHRGSVIEALLNLLISLAVTSGKFLSPCLSMLVSNLSQPSVTE-QIEHFERAHAALKYILRLVPLAPSFLLPILAQVMP 162 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHhCCchHHHHHHHHHHhCCcchhhh-hHHHHHHHHHHHHHHHHHccCchhhHHHHHHHHcc
Confidence 377788999999999999998887787776655443300 0001 256677788889888888764 346666655553
No 368
>KOG3911 consensus Nucleolar protein NOP52/RRP1 [RNA processing and modification]
Probab=21.71 E-value=9.3e+02 Score=27.76 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=44.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHH--HHhhcCcchHHHHHHHHHHHHHHHhhC
Q 001255 494 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLF--FQHLDDPHHKVAQAALSTLADIIPSCR 562 (1113)
Q Consensus 494 ~~~s~nWkeR~eal~~L~~~l~~~~~~~~~v~~~l~~l~~~l--~~~l~Dsn~kV~~~~L~~l~~l~~~~~ 562 (1113)
.+++.+=++|.-||+.|+++|..-...-.+-..++-+|+..| .-|+.| -.-+.+-.-+.|+.|+..+.
T Consensus 15 kLA~ne~~tRdrAlr~Lrkyi~ak~~k~~F~~~dflklWKGLfY~MWmqD-kPllQeeLa~~laqLv~~f~ 84 (378)
T KOG3911|consen 15 KLACNERKTRDRALRKLRKYISAKTQKEGFDQDDFLKLWKGLFYCMWMQD-KPLLQEELADTLAQLVHIFT 84 (378)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhHHHHhhcC-CchHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999753221112225778888866 446666 22344444466666665554
No 369
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=21.65 E-value=3.1e+02 Score=28.37 Aligned_cols=62 Identities=15% Similarity=0.386 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHhcCCchhh-----HHhHHH-HHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhchhh
Q 001255 898 TSKHGALQQLIKASVANDHSIW-----TKYFNQ-ILTAVLEVLDD----ADSSVREVALSLINEMLKNQKDV 959 (1113)
Q Consensus 898 ~~R~~AL~~L~~~l~~~~~~~~-----~~~f~~-ll~~Ll~~L~D----~n~~vr~~aL~~L~~L~~~~~~~ 959 (1113)
.+|..+|+.|..+++-.-...| .+.|-. +.+.+...|++ ++..+|...+++|...++..++.
T Consensus 96 ~q~e~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~llE~~~~~K~~~ik~~if~il~~~vk~h~h~ 167 (171)
T PF12922_consen 96 SQRERILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLLENPEIVKNKSIKDAIFRILGTAVKKHNHA 167 (171)
T ss_pred HHHHHHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHHcChHhhccHHHHHHHHHHHHHHHHHcccc
Confidence 4888899998888875533333 333443 34446677776 56779999999999998876654
No 370
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=21.62 E-value=7.3e+02 Score=23.89 Aligned_cols=96 Identities=9% Similarity=0.106 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHH
Q 001255 902 GALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPK 981 (1113)
Q Consensus 902 ~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~ 981 (1113)
....+|+.++...+...++..+......|.+.|... -.+..-.++|..|+.-....+...=...+..+|+.+.+..-.
T Consensus 10 ~~y~~lg~~va~~~~~~~~~~~~~Y~~~l~~al~~~--~~~~~~~Nvl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~ 87 (117)
T PF08349_consen 10 KIYRELGRLVANAGKRPLEEVFEEYEELLMEALSKP--PTRGSHINVLQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIP 87 (117)
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCcc
Confidence 356777888877655444455555555555555432 112234555666655444445444455667778888776322
Q ss_pred HHHHHHHHHHHHHhhcChh
Q 001255 982 VSNEAEHCLTVVLSQYDPF 1000 (1113)
Q Consensus 982 Vr~aa~~~l~~l~~~~~p~ 1000 (1113)
.......|+.|+..++-+
T Consensus 88 -l~~~l~~L~~~~~ry~~~ 105 (117)
T PF08349_consen 88 -LSVPLTLLKHLARRYPDE 105 (117)
T ss_pred -HHHHHHHHHHHHHHCCCH
Confidence 344567778888777754
No 371
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=21.33 E-value=4.7e+02 Score=27.60 Aligned_cols=76 Identities=22% Similarity=0.200 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHHHHHhhCHHHHHhhhhhHH
Q 001255 966 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 1045 (1113)
Q Consensus 966 ~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~li 1045 (1113)
..||+++.+..=....-+..+...+..|. -++|..++..|.+.+. +..++.-|++.| +..+.+++.-.|+.++
T Consensus 44 ~aL~~~L~sv~W~~~~e~~e~~~ll~~W~-~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L----~~~~d~~l~~yLpQLV 116 (184)
T smart00145 44 KALPKFLLSVNWSDADEVAQALSLLKKWA-PLDPEDALELLSPKFP--DPFVRAYAVERL----ESASDEELLLYLLQLV 116 (184)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCHHHHHHHhCccCC--CHHHHHHHHHHH----HhCCHHHHHHHHHHHH
Confidence 35778886665444554556667888885 4688888888887665 445666666544 5577777766665554
Q ss_pred HHH
Q 001255 1046 PAL 1048 (1113)
Q Consensus 1046 p~l 1048 (1113)
.+|
T Consensus 117 QaL 119 (184)
T smart00145 117 QAL 119 (184)
T ss_pred HHH
Confidence 444
No 372
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.12 E-value=4.3e+02 Score=25.44 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=56.5
Q ss_pred CcccHHHHHHHhhhcCCHHHHHHHHHHHHHHHhhCCCchhhhhcHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhChH
Q 001255 98 AVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPE 177 (1113)
Q Consensus 98 ~~r~l~~i~~~~~~~K~~~vR~~~a~~L~~~l~~~~~~~~~~~~~~~l~~~i~k~l~Da~~eVR~~AR~a~~~~~~~~p~ 177 (1113)
.++++|.+..++..+++++.|..+.-.+..+-.+.+-+ ...++.+.+.|.+.....+. .++++-.+...|-.
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~---~~~l~~l~~~i~~~~~~~~~-----~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS---DEVLNALMESILKNWTQETV-----QRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc---HHHHHHHHHHHHhccccchh-----HHHHHHHHHHHHHc
Confidence 35788999988855888888888887777776666533 45566666667666666655 34455555555522
Q ss_pred HHHHHHhcCCHHHHHHHhh
Q 001255 178 RSRRLFSSFDPAIQRIINE 196 (1113)
Q Consensus 178 ~a~~ll~~Ld~~~~k~l~~ 196 (1113)
+ .=...|+...-|.|.+
T Consensus 76 q--~~~~~lp~~~~~~l~~ 92 (121)
T PF12397_consen 76 Q--ENVDSLPRKVFKALLK 92 (121)
T ss_pred c--cccccCCHHHHHHHHc
Confidence 2 1133466666666654
No 373
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=20.93 E-value=6.4e+02 Score=33.48 Aligned_cols=130 Identities=16% Similarity=0.161 Sum_probs=73.3
Q ss_pred HHHH-HHHHHHHHHhcCCCchhHHHHh---HHHHHHHHHHhh-cCcchHHHHHHHHHHHHHHHhhCcchHHHHHH-HHHH
Q 001255 502 ARVS-AFNYLRSLLQQGPKGIQEVIQN---FEKVMKLFFQHL-DDPHHKVAQAALSTLADIIPSCRKPFESYMER-ILPH 575 (1113)
Q Consensus 502 eR~e-al~~L~~~l~~~~~~~~~v~~~---l~~l~~~l~~~l-~Dsn~kV~~~~L~~l~~l~~~~~~~~~~~l~~-ll~~ 575 (1113)
+|++ ||+.|++++...+...+ |... +--.+++|.-.+ .-.+.||.+.+|+++..+ ++.++.+.+-+.- .|.-
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlas-vfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~-Tan~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLAS-VFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLA-TANKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhh-hccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHH-hcccHHHHHHHhhhHHHH
Confidence 3544 89999999988664321 1111 112344444444 357889999999998754 4444444433332 3333
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhhCCccc------hHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 001255 576 VFSRLIDPKELVRQPCSTTLDIVSKTYSVDS------LLPALLRSLDEQRSPKAKLAVIEFAISS 634 (1113)
Q Consensus 576 ll~klgD~K~~vr~~a~~~L~~i~e~~~~~~------~l~~l~~~~~~~knpkvk~~~L~~l~~~ 634 (1113)
|+. |-.+.++.|+.+.++|-++...-..-+ -+..|..++.....+.+|.++.+.+...
T Consensus 1818 LL~-lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl 1881 (2235)
T KOG1789|consen 1818 LLT-LLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKL 1881 (2235)
T ss_pred HHH-HHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHh
Confidence 333 335678899999998877653311110 0011222333445678887777766543
No 374
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.86 E-value=5.5e+02 Score=35.51 Aligned_cols=76 Identities=9% Similarity=0.076 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcC
Q 001255 923 FNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD 998 (1113)
Q Consensus 923 f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~ 998 (1113)
|..+...++....|++..+|-.|+..+..|....|..+...+..++|-|-+.+-|-.++|-..+...++.+-..++
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lG 1614 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLG 1614 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 6666666666667889999999999999999999999999999999999999999999999998888887766654
No 375
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=20.72 E-value=9.5e+02 Score=30.13 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHHHHhcCCc----hhhHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc---hhh-----hhhHH
Q 001255 897 PTSKHGALQQLIKASVANDH----SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ---KDV-----MEDSV 964 (1113)
Q Consensus 897 ~~~R~~AL~~L~~~l~~~~~----~~~~~~f~~ll~~Ll~~L~D~n~~vr~~aL~~L~~L~~~~---~~~-----~~~~~ 964 (1113)
++.|++-+ .|.+.+....+ ....+.|+.+...++=.+..-|..|-..+|++|-.|++++ |.. +.+|.
T Consensus 848 pEhr~~f~-~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~mg~~~~n~F~~~yy 926 (1053)
T COG5101 848 PEHRKNFL-LLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEMGVPFINQFYAQYY 926 (1053)
T ss_pred hHHHHHHH-HHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 35555555 44444444332 2335678888888887787778889999999999999865 433 24566
Q ss_pred HHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHhhcChhhHHHHhhhhhccCChhHHHHHHHHHHH-HHHhhCHHHHHhhh
Q 001255 965 EIVIEKLLHVTKDA--VPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTK-LVGRLSQEELMAQL 1041 (1113)
Q Consensus 965 ~~~l~~ll~~~~Ds--~~~Vr~aa~~~l~~l~~~~~p~~~l~~l~~~l~s~~~~~~~~al~~L~~-lie~~~~~~l~~~L 1041 (1113)
-.++..++-.+-|+ |-.....+.-.+..+--+....-. .|.....+.-+... -+.+.. ++...| ....+.+
T Consensus 927 ~s~l~~il~vltDsDhKsgF~~Q~Llla~li~lv~dnkis----VPlyd~~~~n~~~l-seyi~~l~~~sfp-~it~e~v 1000 (1053)
T COG5101 927 MSTLENILGVLTDSDHKSGFDQQCLLLAFLIRLVKDNKIS----VPLYDGINPNITIL-SEYIVGLFVKSFP-NITQESV 1000 (1053)
T ss_pred HHHHHHHHeeeeccchhccchHHHHHHHHHHHHHhccccc----cccccCCCCchhhH-HHHHHHHHHhhcC-cccHHHH
Confidence 66777777666665 333333333333333222221111 23333222211111 233333 333333 3344455
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 001255 1042 PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1076 (1113)
Q Consensus 1042 ~~lip~l~~~l~D~~seVRkaAv~clv~i~~~lGe 1076 (1113)
..+.-++.+.++|-. --+.......|.+|..-||
T Consensus 1001 ~~f~~~l~~~~~d~~-ifk~~~~df~vkv~e~g~d 1034 (1053)
T COG5101 1001 KIFSVGLFELCGDDE-IFKEHVEDFRVKVYEFGTD 1034 (1053)
T ss_pred HHHHHHHHHHhCcHH-HHHHHHHHHhhheeeeCCC
Confidence 666677787777642 1233444566666655554
No 376
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.68 E-value=1.1e+03 Score=32.56 Aligned_cols=136 Identities=20% Similarity=0.223 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHhchhhh---hhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhhcC---hhhHHHHhhhhhc-
Q 001255 939 SSVREVALSLINEMLKNQKDVM---EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD---PFRCLSVIVPLLV- 1011 (1113)
Q Consensus 939 ~~vr~~aL~~L~~L~~~~~~~~---~~~~~~~l~~ll~~~~Ds~~~Vr~aa~~~l~~l~~~~~---p~~~l~~l~~~l~- 1011 (1113)
..||...+..|-.|++.-|... -+++--.|-.+++.-.+.++.|.+-+-.|++.|..-+- |..|+..+.+.+-
T Consensus 856 ~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~ 935 (1610)
T KOG1848|consen 856 VEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLV 935 (1610)
T ss_pred ceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHH
Confidence 4488888888888888776432 13333344455565566788999999999999886542 4456666665553
Q ss_pred ---cC-ChhHHHHHHHHHHHHH--------HhhCHHHH-------------------HhhhhhHHHHHHHHhcCCCHHHH
Q 001255 1012 ---TE-DEKTLVTCINCLTKLV--------GRLSQEEL-------------------MAQLPSFLPALFEAFGNQSADVR 1060 (1113)
Q Consensus 1012 ---s~-~~~~~~~al~~L~~li--------e~~~~~~l-------------------~~~L~~lip~l~~~l~D~~seVR 1060 (1113)
-+ +--+-..|+-+ -|.+ +..+.+.. +...-.++-.|.++++|.-.+||
T Consensus 936 fs~QktdlNISltAi~l-fWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVR 1014 (1610)
T KOG1848|consen 936 FSRQKTDLNISLTAIGL-FWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVR 1014 (1610)
T ss_pred HHhhhccccccHHHHHH-HHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHh
Confidence 11 11111222211 1211 11111111 12234566789999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 001255 1061 KTVVFCLVDIYIMLG 1075 (1113)
Q Consensus 1061 kaAv~clv~i~~~lG 1075 (1113)
+.|+..+..+..--|
T Consensus 1015 ngAvqtlfri~~Shg 1029 (1610)
T KOG1848|consen 1015 NGAVQTLFRIFNSHG 1029 (1610)
T ss_pred hhHHHHHHHHHhhhc
Confidence 999998887776555
No 377
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=20.02 E-value=1.5e+03 Score=29.42 Aligned_cols=86 Identities=21% Similarity=0.325 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCchhhHHhHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHhCCC
Q 001255 900 KHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSS-VREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDA 978 (1113)
Q Consensus 900 R~~AL~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~L~D~n~~-vr~~aL~~L~~L~~~~~~~~~~~~~~~l~~ll~~~~Ds 978 (1113)
...||+.|.++|.......|......|+.-.++...|...+ +..-+|.-...||+..+- ..++.++-+.|+..-+.
T Consensus 24 kq~ALqsLhd~i~~kr~r~~q~~~EpIMfKyleLCVdLkKg~lAKdGL~QYk~~~Qqvnv---~SlE~VvrhflklAe~k 100 (988)
T KOG2072|consen 24 KQDALQSLHDTITAKRHRWWQTVLEPIMFKYLELCVDLKKGHLAKDGLFQYKNLCQQVNV---KSLENVVRHFLKLAEEK 100 (988)
T ss_pred ccHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhch---HhHHHHHHHHHHHHHHH
Confidence 34699999999988888888887888888777777786444 667789888888884431 33555555666555554
Q ss_pred hHHHHHHHHH
Q 001255 979 VPKVSNEAEH 988 (1113)
Q Consensus 979 ~~~Vr~aa~~ 988 (1113)
...-++.+.+
T Consensus 101 te~Aq~qad~ 110 (988)
T KOG2072|consen 101 TEAAQEQADE 110 (988)
T ss_pred HHHHHHHHHH
Confidence 4444444444
Done!